Query 011142
Match_columns 492
No_of_seqs 127 out of 1240
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:35:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 1.3E-67 2.9E-72 531.3 46.8 479 4-482 5-486 (491)
2 PLN03007 UDP-glucosyltransfera 100.0 2.5E-64 5.4E-69 513.4 46.9 468 6-482 4-480 (482)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 3E-64 6.6E-69 508.3 45.2 456 5-484 7-473 (477)
4 PLN02208 glycosyltransferase f 100.0 4.9E-63 1.1E-67 494.8 43.7 433 6-483 3-440 (442)
5 PLN02992 coniferyl-alcohol glu 100.0 6.2E-63 1.3E-67 495.5 44.0 439 7-485 5-472 (481)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 3E-62 6.5E-67 490.4 43.6 435 1-481 1-449 (451)
7 PLN02764 glycosyltransferase f 100.0 4.7E-62 1E-66 484.9 44.1 440 6-489 4-452 (453)
8 PLN00164 glucosyltransferase; 100.0 7E-62 1.5E-66 492.8 44.3 448 5-484 1-475 (480)
9 PLN03015 UDP-glucosyl transfer 100.0 6.6E-62 1.4E-66 485.2 42.5 439 6-480 2-466 (470)
10 PLN02555 limonoid glucosyltran 100.0 1.7E-61 3.7E-66 486.5 44.4 454 1-483 1-470 (480)
11 PLN02173 UDP-glucosyl transfer 100.0 1.8E-61 3.8E-66 482.5 42.7 432 5-482 3-448 (449)
12 PLN02210 UDP-glucosyl transfer 100.0 1.2E-61 2.7E-66 487.9 41.6 441 1-482 1-455 (456)
13 PLN00414 glycosyltransferase f 100.0 5E-61 1.1E-65 480.9 42.8 439 5-486 2-444 (446)
14 PLN02207 UDP-glycosyltransfera 100.0 6E-61 1.3E-65 480.4 43.1 449 5-482 1-465 (468)
15 PLN02670 transferase, transfer 100.0 6.9E-61 1.5E-65 480.4 42.7 456 1-484 1-467 (472)
16 PLN03004 UDP-glycosyltransfera 100.0 1.3E-60 2.7E-65 476.6 39.8 432 7-471 3-450 (451)
17 PLN02448 UDP-glycosyltransfera 100.0 8.4E-60 1.8E-64 477.9 44.0 441 3-483 6-458 (459)
18 PLN02562 UDP-glycosyltransfera 100.0 8.2E-60 1.8E-64 474.2 42.7 426 5-481 4-448 (448)
19 PLN02554 UDP-glycosyltransfera 100.0 2.4E-59 5.1E-64 476.2 43.1 450 7-483 2-479 (481)
20 PLN02152 indole-3-acetate beta 100.0 5.5E-59 1.2E-63 465.3 42.5 434 6-480 2-454 (455)
21 PLN02167 UDP-glycosyltransfera 100.0 1.4E-58 3E-63 469.9 42.4 450 6-482 2-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.8E-50 8.2E-55 409.8 27.7 407 6-484 19-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 5.8E-51 1.3E-55 423.0 1.5 401 9-484 2-445 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 4.3E-43 9.4E-48 352.8 31.0 381 13-480 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3.5E-42 7.6E-47 347.7 24.2 384 8-479 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 1.6E-41 3.4E-46 337.6 21.4 395 7-485 1-403 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2E-39 4.4E-44 336.6 19.4 398 7-460 5-437 (496)
28 PRK12446 undecaprenyldiphospho 99.9 5.2E-26 1.1E-30 223.5 22.8 315 7-442 1-326 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.1E-24 2.4E-29 213.1 23.9 309 8-438 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.6E-22 3.4E-27 196.4 24.5 323 8-454 1-337 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 4.8E-22 1E-26 194.2 22.5 304 9-442 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.9 1.4E-19 3.1E-24 179.9 25.6 325 7-452 1-335 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 8.1E-18 1.8E-22 166.9 24.3 325 9-452 1-335 (350)
34 TIGR01133 murG undecaprenyldip 99.7 4.3E-16 9.3E-21 154.4 23.9 321 8-452 1-332 (348)
35 PRK13609 diacylglycerol glucos 99.7 9.1E-16 2E-20 153.9 25.6 334 6-453 3-350 (380)
36 TIGR00215 lpxB lipid-A-disacch 99.7 2.8E-16 6E-21 156.9 21.4 350 8-477 6-383 (385)
37 COG4671 Predicted glycosyl tra 99.7 4.6E-15 1E-19 137.4 22.6 331 5-442 7-366 (400)
38 TIGR03590 PseG pseudaminic aci 99.7 1.7E-15 3.7E-20 144.3 20.6 105 280-397 170-278 (279)
39 PRK13608 diacylglycerol glucos 99.7 1.2E-14 2.6E-19 145.9 22.6 147 279-455 201-352 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 2.4E-14 5.1E-19 143.7 22.2 333 7-458 1-358 (380)
41 PLN02605 monogalactosyldiacylg 99.5 4.1E-12 8.9E-17 127.4 25.8 141 270-441 196-347 (382)
42 TIGR03492 conserved hypothetic 99.5 5.1E-12 1.1E-16 126.4 24.1 335 16-442 5-365 (396)
43 PF04101 Glyco_tran_28_C: Glyc 99.5 3.1E-15 6.7E-20 131.7 -2.8 137 282-442 1-145 (167)
44 PLN02871 UDP-sulfoquinovose:DA 99.4 3.2E-10 6.9E-15 116.8 28.6 139 283-455 265-414 (465)
45 cd03814 GT1_like_2 This family 99.3 3.5E-09 7.5E-14 104.9 30.9 95 340-456 246-347 (364)
46 PF03033 Glyco_transf_28: Glyc 99.3 6.5E-12 1.4E-16 107.0 7.4 125 10-150 1-132 (139)
47 COG3980 spsG Spore coat polysa 99.3 3.2E-10 6.8E-15 102.6 16.4 141 282-454 160-302 (318)
48 cd03823 GT1_ExpE7_like This fa 99.2 1.8E-08 3.8E-13 99.5 29.3 142 280-454 190-342 (359)
49 cd04962 GT1_like_5 This family 99.2 1.9E-08 4.1E-13 100.4 29.4 331 8-455 1-350 (371)
50 cd03794 GT1_wbuB_like This fam 99.2 1.4E-08 3E-13 101.2 28.5 147 280-457 219-381 (394)
51 cd03800 GT1_Sucrose_synthase T 99.2 1.1E-08 2.4E-13 103.1 26.9 94 340-455 282-382 (398)
52 cd03817 GT1_UGDG_like This fam 99.2 4.3E-08 9.3E-13 97.2 29.7 96 340-458 258-360 (374)
53 cd03816 GT1_ALG1_like This fam 99.2 6.4E-08 1.4E-12 98.2 30.3 354 7-456 3-399 (415)
54 cd03801 GT1_YqgM_like This fam 99.2 5E-08 1.1E-12 96.1 28.6 333 9-453 1-353 (374)
55 cd03808 GT1_cap1E_like This fa 99.1 8E-08 1.7E-12 94.5 28.9 327 9-455 1-343 (359)
56 cd03818 GT1_ExpC_like This fam 99.1 1.2E-07 2.6E-12 95.7 29.8 94 340-455 280-380 (396)
57 PRK10307 putative glycosyl tra 99.1 6.8E-07 1.5E-11 90.8 34.8 146 282-456 230-388 (412)
58 cd03820 GT1_amsD_like This fam 99.1 1.3E-07 2.9E-12 92.4 26.6 95 340-456 234-334 (348)
59 PRK05749 3-deoxy-D-manno-octul 99.1 2E-07 4.4E-12 95.0 28.7 86 352-457 314-404 (425)
60 cd03798 GT1_wlbH_like This fam 99.1 3.1E-07 6.7E-12 90.8 29.1 316 17-443 13-346 (377)
61 cd03795 GT1_like_4 This family 99.0 2.1E-07 4.6E-12 92.1 26.3 147 282-457 192-348 (357)
62 cd03825 GT1_wcfI_like This fam 99.0 5E-07 1.1E-11 89.7 29.0 94 340-455 243-344 (365)
63 TIGR00236 wecB UDP-N-acetylglu 99.0 1.6E-07 3.5E-12 93.7 24.5 130 280-442 197-335 (365)
64 PRK14089 ipid-A-disaccharide s 99.0 9.8E-08 2.1E-12 93.0 20.6 166 280-476 167-344 (347)
65 cd03799 GT1_amsK_like This is 99.0 1.6E-06 3.5E-11 85.6 29.9 93 340-454 235-340 (355)
66 cd03805 GT1_ALG2_like This fam 99.0 9.3E-07 2E-11 89.0 28.4 93 340-455 279-378 (392)
67 TIGR03449 mycothiol_MshA UDP-N 98.9 1.2E-06 2.6E-11 88.7 29.0 94 340-455 282-382 (405)
68 PF04007 DUF354: Protein of un 98.9 2.4E-06 5.2E-11 82.6 26.8 112 8-148 1-112 (335)
69 PRK09922 UDP-D-galactose:(gluc 98.9 1.9E-06 4E-11 85.8 26.9 149 282-458 181-343 (359)
70 cd03811 GT1_WabH_like This fam 98.9 1.3E-06 2.8E-11 85.5 25.0 140 280-450 188-341 (353)
71 cd03819 GT1_WavL_like This fam 98.9 4.4E-06 9.5E-11 82.7 28.8 98 340-457 245-347 (355)
72 cd03807 GT1_WbnK_like This fam 98.8 1.1E-05 2.3E-10 79.5 31.3 89 340-452 250-343 (365)
73 TIGR03087 stp1 sugar transfera 98.8 2.3E-06 4.9E-11 86.5 26.1 92 340-455 279-376 (397)
74 cd03796 GT1_PIG-A_like This fa 98.8 6.8E-06 1.5E-10 83.0 29.6 79 340-442 249-334 (398)
75 cd03821 GT1_Bme6_like This fam 98.8 9.3E-06 2E-10 80.3 30.1 92 340-455 261-359 (375)
76 cd03822 GT1_ecORF704_like This 98.8 3.1E-06 6.6E-11 83.8 25.7 93 340-455 246-348 (366)
77 cd05844 GT1_like_7 Glycosyltra 98.8 7.6E-06 1.7E-10 81.4 27.2 93 340-454 244-349 (367)
78 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 3.8E-06 8.2E-11 83.7 24.4 134 279-442 197-338 (363)
79 cd03812 GT1_CapH_like This fam 98.7 1.2E-05 2.6E-10 79.6 27.6 85 340-447 248-337 (358)
80 COG1519 KdtA 3-deoxy-D-manno-o 98.7 3.3E-05 7.2E-10 75.1 28.6 326 10-460 51-405 (419)
81 TIGR02472 sucr_P_syn_N sucrose 98.7 2.9E-05 6.2E-10 79.5 30.3 92 340-453 316-418 (439)
82 TIGR02149 glgA_Coryne glycogen 98.7 4.8E-05 1E-09 76.4 30.6 148 283-454 203-365 (388)
83 cd04955 GT1_like_6 This family 98.6 4.5E-05 9.8E-10 75.6 28.0 134 285-452 197-341 (363)
84 PLN02275 transferase, transfer 98.6 0.00016 3.4E-09 72.3 31.8 76 340-439 285-371 (371)
85 cd03802 GT1_AviGT4_like This f 98.6 3.5E-05 7.5E-10 75.5 26.6 127 284-441 174-308 (335)
86 PRK15427 colanic acid biosynth 98.6 0.00012 2.7E-09 73.9 29.3 144 281-454 222-384 (406)
87 TIGR03088 stp2 sugar transfera 98.5 0.00014 3.1E-09 72.7 29.1 91 341-453 255-350 (374)
88 cd03809 GT1_mtfB_like This fam 98.5 1.8E-05 4E-10 78.2 22.0 91 339-453 251-348 (365)
89 PLN02846 digalactosyldiacylgly 98.5 8.3E-05 1.8E-09 75.2 25.2 122 287-442 234-364 (462)
90 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00027 5.9E-09 77.3 30.5 161 269-455 469-651 (1050)
91 cd04951 GT1_WbdM_like This fam 98.5 0.00014 3.1E-09 71.9 26.7 128 282-442 189-327 (360)
92 cd03804 GT1_wbaZ_like This fam 98.4 4.4E-05 9.6E-10 75.6 21.4 126 284-442 198-327 (351)
93 PLN02949 transferase, transfer 98.4 0.001 2.2E-08 68.2 31.3 114 340-483 334-457 (463)
94 PRK01021 lpxB lipid-A-disaccha 98.4 0.00033 7.1E-09 72.2 26.3 192 236-459 379-589 (608)
95 PF02684 LpxB: Lipid-A-disacch 98.4 0.00011 2.4E-09 72.2 22.1 201 236-472 151-367 (373)
96 PF02350 Epimerase_2: UDP-N-ac 98.4 2.8E-06 6E-11 83.5 11.0 254 97-441 48-318 (346)
97 PRK15179 Vi polysaccharide bio 98.4 0.00094 2E-08 71.3 30.3 95 340-454 573-672 (694)
98 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00013 2.8E-09 72.5 22.4 131 280-440 201-338 (365)
99 cd03792 GT1_Trehalose_phosphor 98.3 0.00066 1.4E-08 67.8 27.2 91 340-454 251-350 (372)
100 TIGR02470 sucr_synth sucrose s 98.3 0.0022 4.9E-08 68.7 31.4 91 340-452 618-724 (784)
101 cd03806 GT1_ALG11_like This fa 98.3 0.00059 1.3E-08 69.3 26.0 81 340-443 304-394 (419)
102 COG0763 LpxB Lipid A disacchar 98.2 0.00045 9.8E-09 66.6 20.9 214 224-480 146-379 (381)
103 KOG3349 Predicted glycosyltran 98.1 7.4E-06 1.6E-10 67.2 6.7 114 282-407 5-131 (170)
104 COG0381 WecB UDP-N-acetylgluco 98.1 0.003 6.6E-08 61.2 24.0 130 280-442 204-342 (383)
105 cd03791 GT1_Glycogen_synthase_ 98.0 0.0029 6.2E-08 65.6 25.7 132 282-441 297-442 (476)
106 cd04949 GT1_gtfA_like This fam 98.0 0.0011 2.4E-08 66.2 21.6 100 340-458 260-362 (372)
107 TIGR02095 glgA glycogen/starch 98.0 0.0057 1.2E-07 63.3 26.3 79 340-440 345-436 (473)
108 cd04950 GT1_like_1 Glycosyltra 98.0 0.015 3.2E-07 58.2 28.4 79 340-442 253-341 (373)
109 PLN02316 synthase/transferase 97.9 0.025 5.4E-07 62.6 31.5 113 341-477 900-1028(1036)
110 PRK00654 glgA glycogen synthas 97.9 0.0059 1.3E-07 63.0 25.6 131 282-440 283-427 (466)
111 PLN00142 sucrose synthase 97.9 0.0037 8.1E-08 67.2 23.1 70 363-452 670-747 (815)
112 PF13844 Glyco_transf_41: Glyc 97.8 0.00021 4.6E-09 71.7 12.3 150 278-450 282-439 (468)
113 PF00534 Glycos_transf_1: Glyc 97.8 0.00013 2.8E-09 64.2 9.0 93 340-454 72-171 (172)
114 cd04946 GT1_AmsK_like This fam 97.8 0.00059 1.3E-08 69.1 14.9 148 282-455 231-391 (407)
115 PRK14098 glycogen synthase; Pr 97.8 0.0099 2.2E-07 61.6 24.0 80 340-439 361-449 (489)
116 cd03813 GT1_like_3 This family 97.6 0.027 5.8E-07 58.3 24.4 92 340-453 353-454 (475)
117 TIGR02918 accessory Sec system 97.6 0.022 4.7E-07 59.1 22.7 150 282-457 320-482 (500)
118 PLN02501 digalactosyldiacylgly 97.5 0.049 1.1E-06 57.3 24.6 116 294-442 557-682 (794)
119 PRK10125 putative glycosyl tra 97.5 0.15 3.2E-06 51.6 27.8 102 286-411 246-356 (405)
120 PRK15484 lipopolysaccharide 1, 97.3 0.0088 1.9E-07 60.0 15.8 82 340-442 256-345 (380)
121 COG5017 Uncharacterized conser 97.2 0.0031 6.7E-08 51.1 9.0 109 283-410 2-123 (161)
122 PRK10017 colanic acid biosynth 97.2 0.33 7.1E-06 49.2 27.0 72 352-443 322-394 (426)
123 cd01635 Glycosyltransferase_GT 97.1 0.044 9.5E-07 49.8 17.6 50 340-391 160-217 (229)
124 PRK14099 glycogen synthase; Pr 97.0 0.38 8.2E-06 49.9 24.5 41 5-45 1-47 (485)
125 PF13692 Glyco_trans_1_4: Glyc 96.9 0.002 4.4E-08 53.9 5.6 80 340-441 52-135 (135)
126 TIGR02193 heptsyl_trn_I lipopo 96.8 0.061 1.3E-06 52.5 16.4 135 279-439 178-319 (319)
127 PF06722 DUF1205: Protein of u 96.8 0.0019 4.1E-08 50.4 4.3 56 265-320 25-85 (97)
128 PF13477 Glyco_trans_4_2: Glyc 96.7 0.017 3.7E-07 48.6 10.3 102 9-146 1-106 (139)
129 KOG4626 O-linked N-acetylgluco 96.6 0.043 9.3E-07 56.0 13.5 124 278-408 756-887 (966)
130 PRK10422 lipopolysaccharide co 96.5 0.63 1.4E-05 46.0 21.2 107 7-145 5-114 (352)
131 PRK15490 Vi polysaccharide bio 96.5 0.72 1.6E-05 47.9 21.6 65 340-411 454-523 (578)
132 COG1817 Uncharacterized protei 96.4 0.63 1.4E-05 43.9 18.7 107 16-149 8-114 (346)
133 PRK09814 beta-1,6-galactofuran 96.3 0.026 5.7E-07 55.4 9.9 110 340-478 206-331 (333)
134 COG3914 Spy Predicted O-linked 96.3 0.11 2.4E-06 52.8 14.0 108 278-392 427-542 (620)
135 PRK10916 ADP-heptose:LPS hepto 96.3 0.35 7.6E-06 47.8 17.9 103 8-144 1-106 (348)
136 TIGR02201 heptsyl_trn_III lipo 96.1 0.47 1E-05 46.8 17.9 107 9-146 1-110 (344)
137 PHA01633 putative glycosyl tra 95.3 0.17 3.6E-06 49.4 10.8 86 340-442 200-308 (335)
138 PF13579 Glyco_trans_4_4: Glyc 95.3 0.033 7.1E-07 47.5 5.3 96 22-147 5-104 (160)
139 PF01975 SurE: Survival protei 94.7 0.04 8.8E-07 49.2 4.3 122 8-149 1-135 (196)
140 TIGR02195 heptsyl_trn_II lipop 94.7 2.9 6.3E-05 40.9 17.9 102 9-144 1-105 (334)
141 PF13524 Glyco_trans_1_2: Glyc 94.6 0.28 6E-06 37.8 8.5 83 366-477 9-91 (92)
142 PF08660 Alg14: Oligosaccharid 94.5 0.46 1E-05 41.4 10.4 113 13-145 3-127 (170)
143 cd03789 GT1_LPS_heptosyltransf 94.3 2.8 6.2E-05 39.8 16.4 44 9-52 1-46 (279)
144 COG0859 RfaF ADP-heptose:LPS h 94.1 3.3 7.1E-05 40.6 16.8 106 7-145 1-108 (334)
145 PF10093 DUF2331: Uncharacteri 94.0 6.4 0.00014 38.7 17.9 101 292-398 191-299 (374)
146 PRK10964 ADP-heptose:LPS hepto 94.0 2.2 4.8E-05 41.5 15.3 43 8-50 1-45 (322)
147 PRK13932 stationary phase surv 93.2 0.5 1.1E-05 44.0 8.6 42 5-48 3-44 (257)
148 PF12000 Glyco_trans_4_3: Gkyc 92.9 1.3 2.8E-05 38.6 10.1 94 33-146 1-95 (171)
149 PF13439 Glyco_transf_4: Glyco 91.9 0.83 1.8E-05 39.4 8.0 29 17-45 11-39 (177)
150 PHA01630 putative group 1 glyc 91.3 5.1 0.00011 39.2 13.6 39 348-388 197-242 (331)
151 PRK13933 stationary phase surv 90.8 2 4.3E-05 40.0 9.5 39 8-48 1-39 (253)
152 TIGR03713 acc_sec_asp1 accesso 90.6 1.9 4.1E-05 45.0 10.3 91 341-458 409-505 (519)
153 cd02067 B12-binding B12 bindin 90.3 3.9 8.4E-05 33.2 10.0 45 9-53 1-45 (119)
154 TIGR02400 trehalose_OtsA alpha 89.9 1.7 3.8E-05 44.5 9.2 102 347-480 342-454 (456)
155 PRK02261 methylaspartate mutas 89.7 1.4 3E-05 36.9 6.9 50 5-54 1-50 (137)
156 PF06258 Mito_fiss_Elm1: Mitoc 87.9 27 0.00059 33.8 19.6 57 350-409 221-281 (311)
157 PF02951 GSH-S_N: Prokaryotic 86.8 0.96 2.1E-05 36.7 4.0 38 8-45 1-41 (119)
158 COG0496 SurE Predicted acid ph 86.7 3.3 7.2E-05 38.3 7.8 114 8-149 1-127 (252)
159 PRK13935 stationary phase surv 86.6 3.6 7.9E-05 38.3 8.1 39 8-48 1-39 (253)
160 PLN02939 transferase, transfer 86.3 14 0.0003 41.2 13.4 84 340-440 836-930 (977)
161 TIGR02919 accessory Sec system 84.8 15 0.00032 37.5 12.3 125 279-442 282-412 (438)
162 KOG2941 Beta-1,4-mannosyltrans 84.6 41 0.00089 32.7 30.4 128 5-152 10-142 (444)
163 TIGR00087 surE 5'/3'-nucleotid 84.3 3 6.5E-05 38.7 6.5 39 8-49 1-40 (244)
164 cd03788 GT1_TPS Trehalose-6-Ph 83.8 3.4 7.4E-05 42.5 7.4 104 345-480 345-459 (460)
165 COG1618 Predicted nucleotide k 83.8 4.8 0.0001 34.5 6.8 39 7-45 5-43 (179)
166 PF02441 Flavoprotein: Flavopr 83.6 1.7 3.7E-05 36.0 4.2 45 8-53 1-45 (129)
167 PRK00346 surE 5'(3')-nucleotid 83.6 6.1 0.00013 36.8 8.2 39 8-48 1-39 (250)
168 PLN03063 alpha,alpha-trehalose 81.6 4.1 8.8E-05 45.0 7.3 102 352-484 370-479 (797)
169 COG1066 Sms Predicted ATP-depe 81.4 7.9 0.00017 38.4 8.3 103 10-148 96-219 (456)
170 PRK01077 cobyrinic acid a,c-di 79.8 20 0.00043 36.8 11.2 37 7-43 3-40 (451)
171 PRK05973 replicative DNA helic 79.6 13 0.00028 34.4 8.8 45 10-54 67-111 (237)
172 COG0052 RpsB Ribosomal protein 79.2 17 0.00036 33.5 9.1 32 118-149 156-189 (252)
173 PF00551 Formyl_trans_N: Formy 78.9 21 0.00046 31.4 9.8 107 8-148 1-110 (181)
174 PRK13934 stationary phase surv 78.2 35 0.00075 32.1 11.2 39 8-48 1-39 (266)
175 PRK08305 spoVFB dipicolinate s 78.1 3.8 8.3E-05 36.5 4.7 43 6-48 4-46 (196)
176 TIGR02370 pyl_corrinoid methyl 77.1 22 0.00047 31.8 9.4 49 7-55 84-132 (197)
177 COG4370 Uncharacterized protei 76.4 7 0.00015 36.9 6.0 60 374-449 325-387 (412)
178 cd03793 GT1_Glycogen_synthase_ 76.1 6.8 0.00015 41.0 6.5 79 351-441 468-552 (590)
179 COG2910 Putative NADH-flavin r 75.7 3.3 7.1E-05 36.2 3.4 34 8-45 1-34 (211)
180 PRK06849 hypothetical protein; 75.4 22 0.00049 35.6 10.0 36 6-45 3-38 (389)
181 PRK05647 purN phosphoribosylgl 75.0 22 0.00048 31.9 8.8 35 7-44 1-37 (200)
182 TIGR00715 precor6x_red precorr 75.0 19 0.00041 33.7 8.6 32 8-44 1-32 (256)
183 PF02310 B12-binding: B12 bind 74.9 11 0.00024 30.4 6.4 45 9-53 2-46 (121)
184 COG1703 ArgK Putative periplas 73.8 22 0.00047 33.9 8.5 40 6-45 50-89 (323)
185 COG0003 ArsA Predicted ATPase 73.7 35 0.00076 33.1 10.4 42 7-48 1-43 (322)
186 cd02071 MM_CoA_mut_B12_BD meth 72.4 51 0.0011 26.8 10.1 38 9-46 1-38 (122)
187 PRK07313 phosphopantothenoylcy 71.9 4.9 0.00011 35.5 3.8 44 7-51 1-44 (182)
188 PRK13931 stationary phase surv 71.8 29 0.00062 32.6 9.0 37 109-147 80-129 (261)
189 TIGR00347 bioD dethiobiotin sy 71.3 55 0.0012 28.0 10.4 27 15-41 6-32 (166)
190 COG0132 BioD Dethiobiotin synt 71.0 69 0.0015 29.3 11.0 36 7-42 1-38 (223)
191 PRK13789 phosphoribosylamine-- 70.5 8.3 0.00018 39.2 5.6 35 6-45 3-37 (426)
192 cd02070 corrinoid_protein_B12- 70.1 16 0.00035 32.8 6.8 47 7-53 82-128 (201)
193 cd01121 Sms Sms (bacterial rad 69.9 64 0.0014 32.1 11.5 42 10-51 85-126 (372)
194 PF07429 Glyco_transf_56: 4-al 69.7 63 0.0014 31.6 10.8 83 340-440 244-332 (360)
195 PF12146 Hydrolase_4: Putative 68.3 9.3 0.0002 28.5 4.1 35 8-42 16-50 (79)
196 cd01124 KaiC KaiC is a circadi 68.2 26 0.00056 30.6 7.8 45 10-54 2-46 (187)
197 KOG1387 Glycosyltransferase [C 68.1 1.2E+02 0.0027 29.5 19.6 288 97-461 132-445 (465)
198 PRK06029 3-octaprenyl-4-hydrox 67.9 7.6 0.00017 34.3 4.1 44 7-51 1-45 (185)
199 PF06925 MGDG_synth: Monogalac 67.5 14 0.00031 32.0 5.8 44 103-148 76-125 (169)
200 PHA02542 41 41 helicase; Provi 66.2 2 4.3E-05 44.2 0.1 41 10-50 193-233 (473)
201 KOG1250 Threonine/serine dehyd 65.4 97 0.0021 30.8 11.1 62 363-442 248-317 (457)
202 cd00561 CobA_CobO_BtuR ATP:cor 65.4 89 0.0019 26.9 10.7 98 9-129 4-106 (159)
203 smart00851 MGS MGS-like domain 64.9 53 0.0011 24.9 7.9 34 108-143 47-89 (90)
204 PRK00784 cobyric acid synthase 64.7 58 0.0013 33.8 10.5 35 9-43 4-39 (488)
205 PRK08760 replicative DNA helic 64.5 29 0.00063 35.8 8.2 41 10-50 232-273 (476)
206 TIGR02655 circ_KaiC circadian 64.1 81 0.0018 32.7 11.4 47 9-55 265-311 (484)
207 PRK14501 putative bifunctional 63.6 18 0.00038 39.8 6.8 112 344-483 345-463 (726)
208 PRK12342 hypothetical protein; 62.8 14 0.00031 34.5 5.0 40 107-148 100-145 (254)
209 COG2109 BtuR ATP:corrinoid ade 62.3 93 0.002 27.6 9.5 98 10-129 31-133 (198)
210 PF02142 MGS: MGS-like domain 62.2 12 0.00025 29.0 3.7 84 24-143 2-94 (95)
211 PRK05920 aromatic acid decarbo 62.2 12 0.00025 33.7 4.2 44 7-51 3-46 (204)
212 cd00550 ArsA_ATPase Oxyanion-t 62.0 40 0.00086 31.5 8.0 44 9-53 1-45 (254)
213 PRK00090 bioD dithiobiotin syn 61.8 94 0.002 28.1 10.4 33 10-42 2-35 (222)
214 PRK08057 cobalt-precorrin-6x r 61.7 20 0.00043 33.4 5.8 90 7-145 2-98 (248)
215 PRK11823 DNA repair protein Ra 61.7 85 0.0018 32.2 10.9 43 10-52 83-125 (446)
216 COG3660 Predicted nucleoside-d 61.6 1.4E+02 0.0031 28.0 19.1 96 282-385 164-271 (329)
217 COG0438 RfaG Glycosyltransfera 61.0 1.5E+02 0.0032 27.9 15.7 81 340-442 256-343 (381)
218 PRK05986 cob(I)alamin adenolsy 60.9 1.2E+02 0.0026 26.9 11.0 102 7-129 22-126 (191)
219 PF05159 Capsule_synth: Capsul 60.4 39 0.00085 31.8 7.8 41 343-386 185-225 (269)
220 KOG0780 Signal recognition par 59.4 47 0.001 32.9 7.9 45 10-54 104-148 (483)
221 COG2185 Sbm Methylmalonyl-CoA 59.3 23 0.00049 29.7 5.1 41 5-45 10-50 (143)
222 cd01424 MGS_CPS_II Methylglyox 59.2 79 0.0017 25.0 8.3 84 19-144 10-100 (110)
223 PF01075 Glyco_transf_9: Glyco 59.0 17 0.00037 33.6 5.0 98 279-385 104-208 (247)
224 PRK12311 rpsB 30S ribosomal pr 58.7 63 0.0014 31.4 8.8 33 117-149 151-185 (326)
225 COG1797 CobB Cobyrinic acid a, 58.7 50 0.0011 33.2 8.1 33 9-41 2-35 (451)
226 PRK06988 putative formyltransf 58.5 91 0.002 30.2 10.0 34 7-45 2-35 (312)
227 TIGR02852 spore_dpaB dipicolin 58.4 12 0.00027 33.1 3.6 39 9-47 2-40 (187)
228 PRK06321 replicative DNA helic 58.0 69 0.0015 33.1 9.5 41 10-50 229-270 (472)
229 PF04464 Glyphos_transf: CDP-G 57.9 6.1 0.00013 39.3 1.9 114 340-474 251-365 (369)
230 PF04413 Glycos_transf_N: 3-De 57.9 50 0.0011 29.2 7.5 98 9-145 22-124 (186)
231 PRK02797 4-alpha-L-fucosyltran 57.7 1.8E+02 0.004 28.0 11.9 81 341-439 206-292 (322)
232 COG0541 Ffh Signal recognition 57.0 1.1E+02 0.0025 30.8 10.2 50 7-56 100-149 (451)
233 PRK06067 flagellar accessory p 57.0 44 0.00095 30.7 7.3 43 10-52 28-70 (234)
234 PRK05595 replicative DNA helic 56.6 70 0.0015 32.7 9.4 42 10-51 204-246 (444)
235 TIGR02015 BchY chlorophyllide 55.7 1.2E+02 0.0025 30.9 10.6 31 110-145 349-379 (422)
236 cd01974 Nitrogenase_MoFe_beta 55.4 1.7E+02 0.0036 29.9 11.8 36 106-146 367-402 (435)
237 cd01980 Chlide_reductase_Y Chl 54.8 1.2E+02 0.0026 30.7 10.6 32 110-146 344-375 (416)
238 PRK05632 phosphate acetyltrans 54.5 88 0.0019 34.1 10.1 35 9-43 4-39 (684)
239 cd02069 methionine_synthase_B1 54.4 44 0.00095 30.3 6.7 49 6-54 87-135 (213)
240 PRK08006 replicative DNA helic 54.2 83 0.0018 32.5 9.3 41 10-50 227-268 (471)
241 PRK10867 signal recognition pa 54.1 1.2E+02 0.0027 30.8 10.4 43 9-51 102-145 (433)
242 TIGR03880 KaiC_arch_3 KaiC dom 53.5 1.4E+02 0.003 27.0 10.1 99 10-128 19-117 (224)
243 TIGR00416 sms DNA repair prote 53.4 71 0.0015 32.8 8.7 42 10-51 97-138 (454)
244 COG1484 DnaC DNA replication p 53.4 23 0.0005 33.1 4.8 47 7-53 105-151 (254)
245 PRK07773 replicative DNA helic 52.8 74 0.0016 35.9 9.4 43 10-52 220-263 (886)
246 PF09001 DUF1890: Domain of un 52.6 17 0.00036 30.1 3.1 34 18-51 10-43 (139)
247 TIGR00421 ubiX_pad polyprenyl 52.6 17 0.00037 32.1 3.5 42 9-51 1-42 (181)
248 PRK08506 replicative DNA helic 52.1 1.3E+02 0.0028 31.1 10.4 42 10-51 195-236 (472)
249 TIGR00665 DnaB replicative DNA 51.8 96 0.0021 31.6 9.5 42 10-51 198-240 (434)
250 PRK05748 replicative DNA helic 51.4 90 0.0019 32.0 9.2 42 10-51 206-248 (448)
251 TIGR00379 cobB cobyrinic acid 51.3 80 0.0017 32.4 8.8 34 10-43 2-36 (449)
252 cd03466 Nitrogenase_NifN_2 Nit 50.6 1.9E+02 0.0041 29.4 11.3 35 106-145 362-396 (429)
253 PRK03359 putative electron tra 50.3 28 0.00061 32.6 4.8 40 107-148 103-148 (256)
254 PF02585 PIG-L: GlcNAc-PI de-N 50.2 1.1E+02 0.0023 24.8 8.0 22 102-125 86-107 (128)
255 TIGR03600 phage_DnaB phage rep 50.1 1.2E+02 0.0026 30.7 9.9 41 10-50 197-238 (421)
256 PF00731 AIRC: AIR carboxylase 49.9 1.4E+02 0.003 25.4 8.4 139 282-461 2-148 (150)
257 COG0223 Fmt Methionyl-tRNA for 49.8 21 0.00046 34.2 4.0 36 7-47 1-36 (307)
258 PRK05636 replicative DNA helic 49.6 67 0.0014 33.5 7.9 41 10-50 268-309 (505)
259 TIGR00064 ftsY signal recognit 49.2 1.9E+02 0.004 27.4 10.3 38 9-46 74-111 (272)
260 PRK09739 hypothetical protein; 48.8 41 0.00088 30.1 5.5 39 5-43 1-42 (199)
261 TIGR00959 ffh signal recogniti 48.8 1.4E+02 0.003 30.4 9.8 42 10-51 102-144 (428)
262 cd01122 GP4d_helicase GP4d_hel 48.8 18 0.0004 34.0 3.5 42 10-51 33-75 (271)
263 PF04244 DPRP: Deoxyribodipyri 48.8 33 0.0007 31.4 4.9 25 20-44 47-71 (224)
264 PRK09165 replicative DNA helic 48.5 1.2E+02 0.0025 31.7 9.5 42 10-51 220-276 (497)
265 PF04127 DFP: DNA / pantothena 48.2 19 0.00041 31.9 3.2 22 24-45 32-53 (185)
266 TIGR00708 cobA cob(I)alamin ad 48.1 1.9E+02 0.0041 25.3 10.2 99 9-129 7-108 (173)
267 COG4088 Predicted nucleotide k 47.5 25 0.00054 31.6 3.7 36 9-44 3-38 (261)
268 KOG3339 Predicted glycosyltran 47.3 1E+02 0.0023 27.1 7.2 26 8-34 39-64 (211)
269 KOG0832 Mitochondrial/chloropl 47.2 84 0.0018 28.6 6.9 114 17-149 90-206 (251)
270 COG2874 FlaH Predicted ATPases 47.0 86 0.0019 28.4 7.0 31 17-47 38-68 (235)
271 PRK07206 hypothetical protein; 47.0 76 0.0016 32.0 7.9 33 8-45 3-35 (416)
272 COG2894 MinD Septum formation 46.9 35 0.00075 31.0 4.5 38 7-44 1-40 (272)
273 PF06506 PrpR_N: Propionate ca 46.8 9.5 0.0002 33.5 1.1 31 117-150 124-154 (176)
274 TIGR02113 coaC_strep phosphopa 46.6 23 0.0005 31.1 3.5 42 9-51 2-43 (177)
275 PF07355 GRDB: Glycine/sarcosi 46.4 39 0.00084 32.9 5.1 45 99-145 63-117 (349)
276 PF08323 Glyco_transf_5: Starc 46.4 25 0.00054 32.7 3.9 37 9-45 1-43 (245)
277 KOG0853 Glycosyltransferase [C 46.3 13 0.00029 38.0 2.1 60 371-448 381-440 (495)
278 PRK14478 nitrogenase molybdenu 46.2 2.1E+02 0.0045 29.6 10.9 34 106-144 383-416 (475)
279 COG1748 LYS9 Saccharopine dehy 46.1 1.4E+02 0.0031 29.8 9.2 33 7-44 1-34 (389)
280 TIGR02699 archaeo_AfpA archaeo 46.0 31 0.00066 30.2 4.1 41 10-51 2-44 (174)
281 cd01423 MGS_CPS_I_III Methylgl 45.9 1.5E+02 0.0033 23.6 8.4 87 20-144 11-106 (116)
282 TIGR01501 MthylAspMutase methy 45.9 85 0.0018 26.1 6.5 45 8-52 2-46 (134)
283 PF06506 PrpR_N: Propionate ca 45.8 28 0.0006 30.5 3.9 31 358-389 33-63 (176)
284 TIGR00639 PurN phosphoribosylg 45.3 2.2E+02 0.0048 25.2 11.1 34 8-44 1-36 (190)
285 PF02374 ArsA_ATPase: Anion-tr 45.3 32 0.0007 33.2 4.5 41 8-48 1-42 (305)
286 TIGR00313 cobQ cobyric acid sy 44.9 2.9E+02 0.0064 28.6 11.7 29 16-44 8-36 (475)
287 TIGR02700 flavo_MJ0208 archaeo 44.9 32 0.00069 31.8 4.3 43 9-51 1-45 (234)
288 PF09314 DUF1972: Domain of un 44.4 2.3E+02 0.0049 25.1 11.6 41 7-47 1-46 (185)
289 cd01715 ETF_alpha The electron 44.2 2.1E+02 0.0045 24.6 10.1 43 104-148 71-116 (168)
290 PRK11519 tyrosine kinase; Prov 43.8 52 0.0011 36.1 6.4 38 7-44 525-564 (719)
291 PRK12475 thiamine/molybdopteri 43.3 1.4E+02 0.0029 29.4 8.6 32 7-43 24-56 (338)
292 PF00448 SRP54: SRP54-type pro 43.2 2E+02 0.0043 25.7 9.0 38 10-47 4-41 (196)
293 TIGR03878 thermo_KaiC_2 KaiC d 43.0 2.8E+02 0.0062 25.9 12.2 36 10-45 39-74 (259)
294 PRK05579 bifunctional phosphop 42.9 38 0.00083 34.1 4.8 47 5-52 4-50 (399)
295 TIGR03877 thermo_KaiC_1 KaiC d 42.5 2.2E+02 0.0048 26.1 9.6 45 9-53 23-67 (237)
296 PF03446 NAD_binding_2: NAD bi 42.5 21 0.00045 30.8 2.5 31 7-42 1-31 (163)
297 TIGR03446 mycothiol_Mca mycoth 42.4 2E+02 0.0044 27.3 9.4 20 103-124 108-127 (283)
298 PLN02939 transferase, transfer 42.4 42 0.00092 37.5 5.3 41 5-45 479-525 (977)
299 PLN02470 acetolactate synthase 42.2 89 0.0019 33.3 7.7 93 286-387 2-110 (585)
300 CHL00072 chlL photochlorophyll 42.0 45 0.00098 31.9 5.0 37 8-44 1-37 (290)
301 TIGR01283 nifE nitrogenase mol 41.8 3.2E+02 0.007 28.0 11.5 35 106-145 385-419 (456)
302 TIGR01007 eps_fam capsular exo 41.5 50 0.0011 29.5 5.0 38 7-44 16-55 (204)
303 COG0143 MetG Methionyl-tRNA sy 41.1 46 0.00099 35.0 5.1 38 7-44 4-51 (558)
304 TIGR02237 recomb_radB DNA repa 40.8 2.6E+02 0.0057 24.8 10.5 43 10-52 15-58 (209)
305 cd01425 RPS2 Ribosomal protein 40.7 2.6E+02 0.0057 24.8 10.6 33 117-149 126-160 (193)
306 cd02065 B12-binding_like B12 b 40.7 66 0.0014 25.8 5.2 42 10-51 2-43 (125)
307 cd01141 TroA_d Periplasmic bin 40.6 43 0.00094 29.3 4.4 38 106-146 60-99 (186)
308 PF01210 NAD_Gly3P_dh_N: NAD-d 40.4 21 0.00045 30.5 2.2 32 9-45 1-32 (157)
309 cd02032 Bchl_like This family 40.4 46 0.00099 31.2 4.7 36 8-43 1-36 (267)
310 TIGR01425 SRP54_euk signal rec 40.4 2.9E+02 0.0063 28.1 10.5 39 10-48 103-141 (429)
311 PRK06732 phosphopantothenate-- 39.7 43 0.00094 30.8 4.3 20 25-44 30-49 (229)
312 TIGR02329 propionate_PrpR prop 39.7 38 0.00082 35.5 4.3 29 117-148 144-172 (526)
313 TIGR00521 coaBC_dfp phosphopan 39.0 39 0.00083 33.9 4.1 45 7-52 3-47 (390)
314 TIGR01281 DPOR_bchL light-inde 38.8 50 0.0011 31.0 4.8 35 8-42 1-35 (268)
315 COG0467 RAD55 RecA-superfamily 38.8 65 0.0014 30.1 5.5 47 9-55 25-71 (260)
316 KOG1014 17 beta-hydroxysteroid 38.0 65 0.0014 30.8 5.1 45 25-71 63-108 (312)
317 PRK04328 hypothetical protein; 37.6 3.4E+02 0.0073 25.2 12.8 44 10-53 26-69 (249)
318 PRK14619 NAD(P)H-dependent gly 37.6 36 0.00078 32.8 3.6 34 6-44 3-36 (308)
319 PF01075 Glyco_transf_9: Glyco 37.4 1.9E+02 0.0041 26.4 8.4 102 7-149 105-212 (247)
320 PRK09302 circadian clock prote 37.3 91 0.002 32.6 6.8 45 9-53 275-319 (509)
321 PRK08229 2-dehydropantoate 2-r 37.2 32 0.00069 33.7 3.2 33 7-44 2-34 (341)
322 COG2120 Uncharacterized protei 37.0 57 0.0012 30.1 4.7 39 4-43 7-46 (237)
323 TIGR00640 acid_CoA_mut_C methy 37.0 2.4E+02 0.0052 23.3 8.8 40 6-45 1-40 (132)
324 cd07038 TPP_PYR_PDC_IPDC_like 36.8 1.4E+02 0.003 25.6 6.8 26 363-388 63-94 (162)
325 COG2085 Predicted dinucleotide 36.8 43 0.00094 30.1 3.6 34 7-45 1-34 (211)
326 PTZ00445 p36-lilke protein; Pr 36.5 2.5E+02 0.0055 25.4 8.3 38 109-147 168-206 (219)
327 PF02702 KdpD: Osmosensitive K 36.2 63 0.0014 28.9 4.5 38 7-44 5-42 (211)
328 PRK14618 NAD(P)H-dependent gly 36.1 38 0.00082 33.0 3.5 34 6-44 3-36 (328)
329 PF05693 Glycogen_syn: Glycoge 35.9 61 0.0013 34.2 5.0 38 119-156 142-182 (633)
330 cd01968 Nitrogenase_NifE_I Nit 35.7 3.4E+02 0.0075 27.3 10.5 35 106-145 346-380 (410)
331 cd00984 DnaB_C DnaB helicase C 35.5 1.1E+02 0.0024 28.0 6.5 43 10-52 16-59 (242)
332 PRK03767 NAD(P)H:quinone oxido 35.5 66 0.0014 28.8 4.7 38 7-44 1-40 (200)
333 TIGR01917 gly_red_sel_B glycin 35.4 67 0.0015 32.2 5.0 44 101-146 61-114 (431)
334 TIGR01918 various_sel_PB selen 35.3 68 0.0015 32.2 5.0 43 101-145 61-113 (431)
335 PRK12744 short chain dehydroge 35.3 1.9E+02 0.004 26.6 8.0 39 1-42 1-39 (257)
336 PRK06249 2-dehydropantoate 2-r 35.2 46 0.001 32.2 3.9 35 6-45 4-38 (313)
337 PRK00207 sulfur transfer compl 34.9 86 0.0019 25.8 4.9 36 8-43 1-40 (128)
338 PF03308 ArgK: ArgK protein; 34.8 1.1E+02 0.0024 28.7 6.0 124 6-148 28-153 (266)
339 KOG1209 1-Acyl dihydroxyaceton 34.6 53 0.0012 29.7 3.7 37 1-42 1-39 (289)
340 PRK10916 ADP-heptose:LPS hepto 34.6 2.4E+02 0.0053 27.5 9.1 89 23-148 201-289 (348)
341 PRK00005 fmt methionyl-tRNA fo 34.3 3.6E+02 0.0078 26.0 9.9 32 8-44 1-32 (309)
342 TIGR00853 pts-lac PTS system, 34.2 1E+02 0.0023 23.8 5.0 39 6-44 2-40 (95)
343 PF10237 N6-adenineMlase: Prob 34.0 3E+02 0.0065 23.7 8.3 101 25-150 13-126 (162)
344 PRK06395 phosphoribosylamine-- 33.9 87 0.0019 32.0 5.8 32 7-43 2-33 (435)
345 COG0859 RfaF ADP-heptose:LPS h 33.6 1.4E+02 0.003 29.2 7.0 100 8-149 176-280 (334)
346 PRK02910 light-independent pro 33.6 62 0.0013 33.9 4.8 35 107-146 353-387 (519)
347 COG2099 CobK Precorrin-6x redu 33.2 3.2E+02 0.0069 25.5 8.6 53 374-436 165-220 (257)
348 COG2861 Uncharacterized protei 33.2 2.1E+02 0.0045 26.4 7.3 28 117-144 148-178 (250)
349 cd01981 Pchlide_reductase_B Pc 33.2 66 0.0014 32.8 4.8 37 107-148 361-397 (430)
350 TIGR01380 glut_syn glutathione 33.2 59 0.0013 31.5 4.3 38 8-45 1-41 (312)
351 PF00185 OTCace: Aspartate/orn 33.0 1.9E+02 0.0042 24.7 7.0 37 7-46 2-38 (158)
352 PF06180 CbiK: Cobalt chelatas 33.0 64 0.0014 30.3 4.3 40 281-320 2-44 (262)
353 PRK12921 2-dehydropantoate 2-r 32.8 45 0.00097 32.0 3.4 31 8-43 1-31 (305)
354 PRK11889 flhF flagellar biosyn 32.7 3.8E+02 0.0083 27.1 9.6 40 8-47 242-281 (436)
355 TIGR02195 heptsyl_trn_II lipop 32.7 1.7E+02 0.0036 28.5 7.5 85 23-148 195-279 (334)
356 PRK10416 signal recognition pa 32.5 4.4E+02 0.0096 25.6 10.2 39 9-47 116-154 (318)
357 PRK09620 hypothetical protein; 32.4 65 0.0014 29.6 4.2 20 25-44 33-52 (229)
358 cd01965 Nitrogenase_MoFe_beta_ 32.4 67 0.0015 32.7 4.8 35 106-145 361-395 (428)
359 PRK13234 nifH nitrogenase redu 32.2 85 0.0018 30.1 5.2 37 7-43 4-40 (295)
360 COG1763 MobB Molybdopterin-gua 32.2 80 0.0017 27.2 4.4 38 7-44 1-39 (161)
361 COG1435 Tdk Thymidine kinase [ 32.1 2.4E+02 0.0052 25.2 7.3 38 7-44 3-41 (201)
362 cd03789 GT1_LPS_heptosyltransf 32.1 1.6E+02 0.0035 27.7 7.1 86 23-148 141-226 (279)
363 PRK06522 2-dehydropantoate 2-r 31.9 58 0.0013 31.1 4.1 31 8-43 1-31 (304)
364 PRK03094 hypothetical protein; 31.9 42 0.00091 25.0 2.2 21 24-44 10-30 (80)
365 PRK12825 fabG 3-ketoacyl-(acyl 31.8 2.4E+02 0.0052 25.4 8.1 35 7-45 6-40 (249)
366 TIGR03837 efp_adjacent_2 conse 31.8 76 0.0016 31.3 4.6 101 291-397 188-296 (371)
367 COG1422 Predicted membrane pro 31.5 1.9E+02 0.0041 25.8 6.6 85 371-481 24-108 (201)
368 COG2086 FixA Electron transfer 31.1 89 0.0019 29.3 4.9 42 105-148 100-147 (260)
369 TIGR01278 DPOR_BchB light-inde 30.8 65 0.0014 33.7 4.4 36 107-147 355-390 (511)
370 PRK00094 gpsA NAD(P)H-dependen 30.8 45 0.00098 32.2 3.1 33 7-44 1-33 (325)
371 PRK06756 flavodoxin; Provision 30.5 92 0.002 26.1 4.6 37 7-43 1-38 (148)
372 COG1348 NifH Nitrogenase subun 30.5 1.2E+02 0.0025 28.0 5.2 43 7-49 1-43 (278)
373 CHL00076 chlB photochlorophyll 30.0 74 0.0016 33.3 4.6 36 106-146 364-399 (513)
374 TIGR02398 gluc_glyc_Psyn gluco 29.9 3.1E+02 0.0067 28.5 9.0 108 343-482 364-482 (487)
375 PRK09590 celB cellobiose phosp 29.8 97 0.0021 24.5 4.2 38 7-44 1-38 (104)
376 cd02040 NifH NifH gene encodes 29.8 89 0.0019 29.2 4.9 35 9-43 3-37 (270)
377 PF04493 Endonuclease_5: Endon 29.7 79 0.0017 28.5 4.1 40 106-145 77-123 (206)
378 PF12695 Abhydrolase_5: Alpha/ 29.7 96 0.0021 25.2 4.6 34 11-44 2-35 (145)
379 PRK11064 wecC UDP-N-acetyl-D-m 29.6 59 0.0013 32.9 3.8 33 6-43 2-34 (415)
380 cd02034 CooC The accessory pro 29.6 1.3E+02 0.0027 24.2 5.0 37 9-45 1-37 (116)
381 PRK13982 bifunctional SbtC-lik 29.5 72 0.0016 32.8 4.3 45 7-52 70-114 (475)
382 PRK12439 NAD(P)H-dependent gly 29.4 55 0.0012 32.1 3.4 36 1-41 1-36 (341)
383 cd06559 Endonuclease_V Endonuc 29.3 65 0.0014 29.1 3.5 38 108-145 83-127 (208)
384 PLN02948 phosphoribosylaminoim 29.3 4.5E+02 0.0098 28.0 10.4 86 362-465 468-562 (577)
385 PRK07688 thiamine/molybdopteri 29.2 3.1E+02 0.0068 26.9 8.6 33 7-44 24-57 (339)
386 PF13499 EF-hand_7: EF-hand do 29.2 96 0.0021 21.5 3.8 53 422-479 13-65 (66)
387 COG0801 FolK 7,8-dihydro-6-hyd 29.1 1.1E+02 0.0025 26.2 4.8 29 282-310 3-31 (160)
388 COG1927 Mtd Coenzyme F420-depe 29.1 4.3E+02 0.0093 23.8 11.3 39 282-320 32-71 (277)
389 PF14336 DUF4392: Domain of un 29.0 1E+02 0.0022 29.5 5.0 50 7-56 40-97 (291)
390 PLN00016 RNA-binding protein; 29.0 68 0.0015 31.9 4.1 38 7-44 52-89 (378)
391 TIGR01286 nifK nitrogenase mol 28.7 81 0.0018 33.0 4.6 33 108-145 429-461 (515)
392 PRK11914 diacylglycerol kinase 28.6 3E+02 0.0064 26.4 8.3 41 5-45 6-49 (306)
393 cd06533 Glyco_transf_WecG_TagA 28.5 3.9E+02 0.0084 23.1 10.8 89 214-321 48-136 (171)
394 PRK13230 nitrogenase reductase 28.4 99 0.0022 29.2 4.9 35 8-42 2-36 (279)
395 PRK06935 2-deoxy-D-gluconate 3 28.2 2.4E+02 0.0052 25.9 7.5 33 9-44 16-48 (258)
396 KOG3062 RNA polymerase II elon 28.2 1.2E+02 0.0027 27.7 4.9 37 7-43 1-38 (281)
397 PRK13185 chlL protochlorophyll 28.0 97 0.0021 29.0 4.8 33 10-42 5-37 (270)
398 TIGR03018 pepcterm_TyrKin exop 28.0 1.3E+02 0.0028 26.9 5.4 39 6-44 33-74 (207)
399 COG3195 Uncharacterized protei 27.9 2.3E+02 0.0051 24.4 6.2 74 370-458 88-162 (176)
400 COG0300 DltE Short-chain dehyd 27.8 1.2E+02 0.0025 28.7 5.0 35 7-44 5-39 (265)
401 cd03412 CbiK_N Anaerobic cobal 27.6 1.1E+02 0.0024 25.0 4.4 38 281-318 2-41 (127)
402 PF07015 VirC1: VirC1 protein; 27.4 1.4E+02 0.003 27.4 5.3 43 10-52 4-47 (231)
403 COG0287 TyrA Prephenate dehydr 27.3 5.5E+02 0.012 24.4 10.0 41 7-52 3-43 (279)
404 TIGR00877 purD phosphoribosyla 27.2 2.6E+02 0.0057 28.2 8.1 33 8-45 1-33 (423)
405 TIGR03837 efp_adjacent_2 conse 27.0 79 0.0017 31.2 3.8 28 17-44 10-38 (371)
406 PF06745 KaiC: KaiC; InterPro 27.0 2.7E+02 0.0058 25.2 7.4 47 9-55 21-68 (226)
407 TIGR01285 nifN nitrogenase mol 27.0 1E+02 0.0022 31.5 4.9 35 106-145 363-397 (432)
408 PRK10422 lipopolysaccharide co 26.9 2.4E+02 0.0051 27.7 7.5 37 106-148 254-290 (352)
409 COG1440 CelA Phosphotransferas 26.9 1.4E+02 0.0031 23.3 4.5 38 7-44 1-38 (102)
410 cd01976 Nitrogenase_MoFe_alpha 26.8 75 0.0016 32.3 3.9 35 106-145 359-393 (421)
411 PRK14569 D-alanyl-alanine synt 26.8 1.2E+02 0.0026 29.0 5.2 38 6-43 2-43 (296)
412 CHL00194 ycf39 Ycf39; Provisio 26.6 99 0.0021 29.8 4.7 33 8-44 1-33 (317)
413 COG0503 Apt Adenine/guanine ph 26.6 1.5E+02 0.0033 26.0 5.4 37 107-145 44-82 (179)
414 TIGR00110 ilvD dihydroxy-acid 26.5 4.9E+02 0.011 27.3 9.6 45 104-150 77-125 (535)
415 PRK00911 dihydroxy-acid dehydr 26.5 4.6E+02 0.01 27.6 9.4 46 103-150 96-145 (552)
416 PRK06718 precorrin-2 dehydroge 26.3 4.1E+02 0.0089 23.7 8.2 147 279-462 10-165 (202)
417 COG1090 Predicted nucleoside-d 26.3 4.1E+02 0.0088 25.3 8.1 21 25-45 12-32 (297)
418 PRK06719 precorrin-2 dehydroge 26.3 1.4E+02 0.003 25.5 4.9 33 7-44 13-45 (157)
419 PRK13869 plasmid-partitioning 26.2 1.1E+02 0.0023 31.0 4.8 37 7-43 120-158 (405)
420 PRK13604 luxD acyl transferase 26.1 1.4E+02 0.0031 28.7 5.5 36 7-42 36-71 (307)
421 PRK05653 fabG 3-ketoacyl-(acyl 26.1 1.3E+02 0.0028 27.2 5.2 34 7-44 5-38 (246)
422 PF10083 DUF2321: Uncharacteri 25.9 1.4E+02 0.0031 25.3 4.6 74 384-481 77-150 (158)
423 cd01143 YvrC Periplasmic bindi 25.9 1.1E+02 0.0024 26.7 4.5 37 107-146 52-89 (195)
424 PRK10499 PTS system N,N'-diace 25.6 1.6E+02 0.0034 23.3 4.8 37 6-42 2-38 (106)
425 cd01983 Fer4_NifH The Fer4_Nif 25.6 1.5E+02 0.0033 21.8 4.8 33 10-42 2-34 (99)
426 PLN02929 NADH kinase 25.5 78 0.0017 30.4 3.5 66 356-441 63-137 (301)
427 PF01695 IstB_IS21: IstB-like 25.5 89 0.0019 27.4 3.7 42 7-48 47-88 (178)
428 PRK12448 dihydroxy-acid dehydr 25.4 3.1E+02 0.0067 29.2 8.0 44 105-150 100-147 (615)
429 COG2159 Predicted metal-depend 25.3 1.8E+02 0.0039 27.9 6.0 68 293-375 141-210 (293)
430 PRK00039 ruvC Holliday junctio 25.3 1.8E+02 0.0039 25.1 5.5 46 101-148 46-106 (164)
431 PF03698 UPF0180: Uncharacteri 25.3 62 0.0013 24.2 2.2 22 24-45 10-31 (80)
432 cd01147 HemV-2 Metal binding p 25.2 1.1E+02 0.0025 28.2 4.7 38 107-147 66-106 (262)
433 PRK05541 adenylylsulfate kinas 25.1 1.7E+02 0.0037 25.2 5.5 43 1-43 1-43 (176)
434 PF06564 YhjQ: YhjQ protein; 25.1 1.4E+02 0.003 27.8 4.9 36 8-43 2-38 (243)
435 PF01497 Peripla_BP_2: Peripla 25.1 92 0.002 28.2 4.0 39 108-149 53-93 (238)
436 TIGR01012 Sa_S2_E_A ribosomal 25.1 98 0.0021 27.6 3.8 33 117-149 107-141 (196)
437 TIGR03445 mycothiol_MshB 1D-my 25.0 3.3E+02 0.0071 26.0 7.7 20 103-124 110-129 (284)
438 PRK10818 cell division inhibit 24.9 1.1E+02 0.0025 28.6 4.6 38 8-45 2-41 (270)
439 COG4081 Uncharacterized protei 24.7 1.1E+02 0.0024 25.1 3.6 36 10-45 6-42 (148)
440 TIGR01918 various_sel_PB selen 24.7 2.5E+02 0.0053 28.4 6.8 50 103-154 323-379 (431)
441 PF13450 NAD_binding_8: NAD(P) 24.5 90 0.0019 22.2 2.9 20 25-44 9-28 (68)
442 PF05225 HTH_psq: helix-turn-h 24.4 1.2E+02 0.0025 19.7 3.2 26 427-455 1-26 (45)
443 PRK11780 isoprenoid biosynthes 24.4 1.6E+02 0.0034 26.9 5.2 38 8-45 2-43 (217)
444 PRK13235 nifH nitrogenase redu 24.4 1.2E+02 0.0027 28.5 4.8 34 9-42 3-36 (274)
445 PRK08533 flagellar accessory p 24.4 5.2E+02 0.011 23.6 8.7 44 9-52 26-69 (230)
446 PRK05246 glutathione synthetas 24.4 1E+02 0.0023 29.8 4.3 39 7-45 1-42 (316)
447 cd07039 TPP_PYR_POX Pyrimidine 24.4 4.5E+02 0.0098 22.5 10.1 29 357-387 63-97 (164)
448 PRK00994 F420-dependent methyl 24.4 1.2E+02 0.0026 27.8 4.2 39 106-146 50-94 (277)
449 PRK07576 short chain dehydroge 24.3 1.4E+02 0.0031 27.7 5.2 40 1-43 1-41 (264)
450 PRK12724 flagellar biosynthesi 24.2 5.6E+02 0.012 26.1 9.3 40 10-49 226-266 (432)
451 PRK00843 egsA NAD(P)-dependent 24.0 6.9E+02 0.015 24.5 11.0 111 7-149 4-121 (350)
452 PRK09444 pntB pyridine nucleot 24.0 1E+02 0.0023 31.2 4.2 38 8-45 307-347 (462)
453 PRK10037 cell division protein 24.0 1.3E+02 0.0028 27.8 4.8 35 9-43 3-38 (250)
454 PF02844 GARS_N: Phosphoribosy 24.0 1E+02 0.0022 24.2 3.3 37 106-144 52-91 (100)
455 COG4394 Uncharacterized protei 23.9 6.5E+02 0.014 24.1 10.3 49 342-395 239-290 (370)
456 PRK05299 rpsB 30S ribosomal pr 23.8 6.1E+02 0.013 23.8 10.6 33 117-149 156-190 (258)
457 TIGR00460 fmt methionyl-tRNA f 23.7 96 0.0021 30.0 3.9 32 8-44 1-32 (313)
458 COG2205 KdpD Osmosensitive K+ 23.6 80 0.0017 34.5 3.4 38 7-44 22-59 (890)
459 PLN02285 methionyl-tRNA formyl 23.5 6E+02 0.013 24.9 9.4 36 5-45 4-45 (334)
460 PF02558 ApbA: Ketopantoate re 23.5 1.2E+02 0.0025 25.4 4.0 21 25-45 11-31 (151)
461 PRK09219 xanthine phosphoribos 23.4 1.8E+02 0.004 25.7 5.3 39 106-146 40-80 (189)
462 PRK13982 bifunctional SbtC-lik 23.4 74 0.0016 32.8 3.1 40 6-45 255-306 (475)
463 PRK04020 rps2P 30S ribosomal p 23.3 1.1E+02 0.0024 27.5 3.9 33 117-149 113-147 (204)
464 TIGR01162 purE phosphoribosyla 23.3 4.8E+02 0.01 22.4 9.1 140 283-465 1-150 (156)
465 PRK13886 conjugal transfer pro 23.3 2.1E+02 0.0045 26.6 5.8 39 7-45 1-41 (241)
466 PRK13054 lipid kinase; Reviewe 23.3 1.7E+02 0.0037 28.0 5.6 39 7-45 3-41 (300)
467 PF05728 UPF0227: Uncharacteri 23.3 1.6E+02 0.0034 26.1 4.8 42 106-149 47-91 (187)
468 PF00070 Pyr_redox: Pyridine n 23.2 1.1E+02 0.0024 22.3 3.4 22 23-44 10-31 (80)
469 TIGR01917 gly_red_sel_B glycin 23.2 3.4E+02 0.0074 27.4 7.4 49 104-154 324-379 (431)
470 PRK13195 pyrrolidone-carboxyla 23.1 1.4E+02 0.0029 27.4 4.4 34 7-40 1-39 (222)
471 COG0489 Mrp ATPases involved i 23.1 2.9E+02 0.0063 26.0 6.9 45 8-52 57-103 (265)
472 PRK13196 pyrrolidone-carboxyla 23.0 1.5E+02 0.0032 26.9 4.7 28 7-34 1-30 (211)
473 COG0205 PfkA 6-phosphofructoki 23.0 6.3E+02 0.014 24.9 9.2 38 7-44 2-41 (347)
474 PLN02240 UDP-glucose 4-epimera 22.9 1.5E+02 0.0033 28.8 5.3 33 7-43 5-37 (352)
475 COG2084 MmsB 3-hydroxyisobutyr 22.8 92 0.002 29.7 3.4 32 8-44 1-32 (286)
476 PLN02293 adenine phosphoribosy 22.8 2.3E+02 0.005 25.1 5.8 41 103-145 49-91 (187)
477 PRK06703 flavodoxin; Provision 22.8 1.5E+02 0.0032 24.9 4.5 37 7-43 1-38 (151)
478 TIGR03609 S_layer_CsaB polysac 22.7 4.1E+02 0.009 25.1 8.1 112 280-405 172-291 (298)
479 TIGR02201 heptsyl_trn_III lipo 22.7 2.8E+02 0.0061 27.0 7.1 38 105-148 251-288 (344)
480 PF09334 tRNA-synt_1g: tRNA sy 22.6 56 0.0012 32.8 2.1 29 16-44 14-45 (391)
481 PRK12374 putative dithiobiotin 22.5 1.5E+02 0.0032 27.1 4.8 35 9-43 4-39 (231)
482 PRK13695 putative NTPase; Prov 22.4 5E+02 0.011 22.2 8.5 32 8-39 1-32 (174)
483 PRK12824 acetoacetyl-CoA reduc 22.3 3.4E+02 0.0075 24.4 7.3 34 9-45 3-36 (245)
484 PF03808 Glyco_tran_WecB: Glyc 22.3 5.1E+02 0.011 22.3 10.7 129 120-318 7-135 (172)
485 PF06418 CTP_synth_N: CTP synt 22.3 1.1E+02 0.0024 28.7 3.7 36 8-43 1-39 (276)
486 TIGR00750 lao LAO/AO transport 22.1 3.4E+02 0.0074 26.0 7.4 38 8-45 35-72 (300)
487 PRK13768 GTPase; Provisional 22.1 1.4E+02 0.003 27.8 4.6 39 7-45 1-40 (253)
488 PRK12827 short chain dehydroge 22.0 3.3E+02 0.0072 24.5 7.2 31 8-42 7-37 (249)
489 PF03720 UDPG_MGDP_dh_C: UDP-g 21.9 1.1E+02 0.0023 24.1 3.2 29 22-50 17-45 (106)
490 PRK08155 acetolactate synthase 21.9 1.3E+02 0.0029 31.8 4.9 89 287-386 4-109 (564)
491 PRK08125 bifunctional UDP-gluc 21.9 7.8E+02 0.017 26.7 10.8 40 108-149 67-107 (660)
492 COG0771 MurD UDP-N-acetylmuram 21.7 1.4E+02 0.003 30.5 4.7 34 7-45 7-40 (448)
493 PRK02645 ppnK inorganic polyph 21.7 1.7E+02 0.0037 28.2 5.2 66 295-385 18-87 (305)
494 TIGR03453 partition_RepA plasm 21.7 1.4E+02 0.003 29.9 4.7 39 6-44 102-142 (387)
495 PF02056 Glyco_hydro_4: Family 21.7 5.3E+02 0.012 22.7 7.7 122 19-152 39-173 (183)
496 PLN00141 Tic62-NAD(P)-related 21.7 1.8E+02 0.004 26.7 5.3 35 5-43 15-49 (251)
497 PRK12743 oxidoreductase; Provi 21.6 3.7E+02 0.0081 24.6 7.4 33 8-43 2-34 (256)
498 PF01380 SIS: SIS domain SIS d 21.6 1.8E+02 0.004 23.3 4.7 33 17-49 62-94 (131)
499 PRK04885 ppnK inorganic polyph 21.5 62 0.0013 30.5 2.0 29 357-387 35-69 (265)
500 COG2179 Predicted hydrolase of 21.5 3.9E+02 0.0084 23.2 6.5 89 23-148 50-140 (175)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-67 Score=531.33 Aligned_cols=479 Identities=59% Similarity=1.080 Sum_probs=362.3
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
+.++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..........+..++++.+++|...+++|.+.+
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 34467999999999999999999999999999999999999877666554321111122499999998765457887654
Q ss_pred ccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcccc
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSK 163 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 163 (492)
.............+....+...+.+.+++++...++++||+|.+++|+..+|+.+|||.+.|++++++....+.+.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 164 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN 164 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc
Confidence 43322222344455556667778888888763346899999999999999999999999999999998877654332211
Q ss_pred ccccCcCCCcccccCCCCCCccccccccCccc-c-chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEE
Q 011142 164 VFESVSSESEYLVVPCLPDKIEFTTQQVDSSL-G-SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVW 241 (492)
Q Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 241 (492)
.......+..+..+|+++....+...+++..+ + ..+..+...+.+....++++++|||.+||+.+++.+...++++++
T Consensus 165 ~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~ 244 (491)
T PLN02534 165 AHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVW 244 (491)
T ss_pred ccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEE
Confidence 11111122234567887754445666677644 2 234444444444445677999999999999999999877777899
Q ss_pred EeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCc
Q 011142 242 CIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGET 321 (492)
Q Consensus 242 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~ 321 (492)
.|||++.......+...++...+..+.++.+||+.+++++||||||||......+++.++..+|+.++.+|||+++....
T Consensus 245 ~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~ 324 (491)
T PLN02534 245 CVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEK 324 (491)
T ss_pred EECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCcc
Confidence 99999753211111100111111123568999999988899999999999999999999999999999999999984321
Q ss_pred chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHH
Q 011142 322 SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQI 401 (492)
Q Consensus 322 ~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~ 401 (492)
......+.+|++|.+++.+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++|.
T Consensus 325 ~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~ 404 (491)
T PLN02534 325 HSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEV 404 (491)
T ss_pred ccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHh
Confidence 11111111688998887788999999999999999999999999999999999999999999999999999999999889
Q ss_pred hccceeecccCCcccccccccccccCHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011142 402 LKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDE-GKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 402 ~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (492)
+|+|+.+..+....||..++.+..++.++|.++|+++|.+ +++++++|+||++|++++++++++||||+.++++||+++
T Consensus 405 ~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i 484 (491)
T PLN02534 405 LRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDV 484 (491)
T ss_pred hcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999988654333343321112248999999999999973 456789999999999999999999999999999999999
Q ss_pred Hh
Q 011142 481 MK 482 (492)
Q Consensus 481 ~~ 482 (492)
++
T Consensus 485 ~~ 486 (491)
T PLN02534 485 LK 486 (491)
T ss_pred HH
Confidence 75
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.5e-64 Score=513.39 Aligned_cols=468 Identities=44% Similarity=0.831 Sum_probs=345.9
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhh--hcCCceEEEEecCCccccCCCCCCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAI--ESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
+++||+++|+|+.||++|++.||+.|++|||+|||++++.+...+++...... ..+..+.+..+++|..+.++|.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46799999999999999999999999999999999999988776665432210 0122345666666644346776654
Q ss_pred cccccc---c---cchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHh
Q 011142 84 NLDMVA---S---LGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYN 157 (492)
Q Consensus 84 ~~~~~~---~---~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 157 (492)
.....+ . ......+......+.+.+++++++ .+||+||+|.+++|+..+|+.+|||.+.+++++++....+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 332110 1 123334445556778888888887 78999999999999999999999999999999887776655
Q ss_pred hhccccccccCcCCCcccccCCCCCCccccccccCcccc-chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhc
Q 011142 158 NLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLG-SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIR 236 (492)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 236 (492)
+...............+..+|+++..+.+....++..-. ..+..+.....+...+++++++||+.+||+++.+.++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~ 241 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFV 241 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhcc
Confidence 443221111111111223467776433334444442211 1233444455556677889999999999999888887766
Q ss_pred CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEE
Q 011142 237 HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVI 316 (492)
Q Consensus 237 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~ 316 (492)
+..+++|||+............++...+..+.++.+|+++++++++|||||||......+++.+++.+|+.++++|||++
T Consensus 242 ~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~ 321 (482)
T PLN03007 242 AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVV 321 (482)
T ss_pred CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 66799999986532211000001111111356799999998889999999999998889999999999999999999999
Q ss_pred eCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHH
Q 011142 317 REGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEK 396 (492)
Q Consensus 317 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~ 396 (492)
+..........+ +|++|.+++.+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 322 ~~~~~~~~~~~~-lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~ 400 (482)
T PLN03007 322 RKNENQGEKEEW-LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEK 400 (482)
T ss_pred ecCCcccchhhc-CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHH
Confidence 864321111112 8899999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 011142 397 LVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLV 476 (492)
Q Consensus 397 rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 476 (492)
++++..++|+.+...+... .....++.++|.++|+++|.+ +++++||+||+++++++++++.+||||+.++++|
T Consensus 401 ~~~~~~~~G~~~~~~~~~~-----~~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~ 474 (482)
T PLN03007 401 LVTQVLRTGVSVGAKKLVK-----VKGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKF 474 (482)
T ss_pred HHHHhhcceeEeccccccc-----cccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9865566776653210000 001248999999999999986 4678999999999999999999999999999999
Q ss_pred HHHHHh
Q 011142 477 IQDIMK 482 (492)
Q Consensus 477 ~~~~~~ 482 (492)
++++.+
T Consensus 475 v~~~~~ 480 (482)
T PLN03007 475 MEELNS 480 (482)
T ss_pred HHHHHh
Confidence 999875
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3e-64 Score=508.25 Aligned_cols=456 Identities=35% Similarity=0.591 Sum_probs=349.0
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
.+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..... ...++++..+++|.. .++|.+.++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~lPdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSIPSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCCCCCCcC
Confidence 347899999999999999999999999999999999999988776654321 112588888887654 378877665
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKV 164 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 164 (492)
..... ......+........+.+.+++++...+|++||+|.+.+|+..+|+.+|||++.|++++++.+..+.+......
T Consensus 82 ~~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 82 VKDLP-PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred hhhcc-hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 43322 13344455666677778888887633467999999999999999999999999999999999998877653221
Q ss_pred ccc-CcCCCcc---cccCCCCCCccccccccCcccc-----chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhh
Q 011142 165 FES-VSSESEY---LVVPCLPDKIEFTTQQVDSSLG-----SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKI 235 (492)
Q Consensus 165 ~~~-~~~~~~~---~~~p~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 235 (492)
... ...+..+ ..+|+++. +..++++..++ ..+...+.........++++++|||.+||+.+++.++..
T Consensus 161 ~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 161 TKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred ccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 110 0111111 13566543 55566665442 112222223333345678899999999999999999877
Q ss_pred cC-CcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEE
Q 011142 236 RH-DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIW 314 (492)
Q Consensus 236 ~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~ 314 (492)
++ ++++.|||+++..........++...+..++++.+||+.++++++|||||||....+.+++.+++.+++..+++|||
T Consensus 238 ~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw 317 (477)
T PLN02863 238 LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIW 317 (477)
T ss_pred cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEE
Confidence 65 68999999975421100000011111113567999999998889999999999999999999999999999999999
Q ss_pred EEeCCCcc-hhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccch
Q 011142 315 VIREGETS-KELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFM 393 (492)
Q Consensus 315 ~~~~~~~~-~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~ 393 (492)
+++..... ..... +|++|.+++...|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.
T Consensus 318 ~~~~~~~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 318 CVKEPVNEESDYSN--IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EECCCcccccchhh--CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 99754321 11122 8889988888889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 011142 394 NEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNV 473 (492)
Q Consensus 394 na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 473 (492)
||+++++++|+|+.+.... ....+.++|.++|+++|.+ ++.||+||+++++++++++++||||+.++
T Consensus 396 na~~v~~~~gvG~~~~~~~----------~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av~~gGSS~~~l 462 (477)
T PLN02863 396 NASLLVDELKVAVRVCEGA----------DTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAIKERGSSVKDL 462 (477)
T ss_pred hHHHHHHhhceeEEeccCC----------CCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 9999865789999885321 1246899999999999942 34999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 011142 474 TLVIQDIMKHV 484 (492)
Q Consensus 474 ~~~~~~~~~~~ 484 (492)
++|++++..++
T Consensus 463 ~~~v~~i~~~~ 473 (477)
T PLN02863 463 DGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.9e-63 Score=494.82 Aligned_cols=433 Identities=24% Similarity=0.388 Sum_probs=332.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
+++||+++|+|+.||++|++.||+.|++|||+|||++++.+...+.+.. .....+.+..++++.. +++|.+....
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCc-cCCCCCcccc
Confidence 4679999999999999999999999999999999999988766554321 1112467777765532 3677664422
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcccccc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVF 165 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (492)
.... ......+....+.+.+.+++++++ .++|+||+| ++.|+..+|+.+|||++.++++++..+. +.+.+.
T Consensus 78 ~~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---- 148 (442)
T PLN02208 78 SDIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---- 148 (442)
T ss_pred cchh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----
Confidence 1111 122233455566888889999988 789999999 5779999999999999999999987654 333321
Q ss_pred ccCcCCCcccccCCCCCC-ccccccccCcccc--chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEE
Q 011142 166 ESVSSESEYLVVPCLPDK-IEFTTQQVDSSLG--SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWC 242 (492)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~-~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (492)
... ...+|+++.. +.+...+++.+-. ..+..+...+.+...+++++++|||.+||+.+++++.+.++++++.
T Consensus 149 ~~~-----~~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 149 GKL-----GVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred ccc-----CCCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 000 1124666542 2234444443211 1133333334345667899999999999999999998887789999
Q ss_pred eccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcc
Q 011142 243 IGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETS 322 (492)
Q Consensus 243 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~ 322 (492)
|||++...... ..++.++.+||+.+++++||||||||...++.+++.+++.+++..+.+++|.+..+...
T Consensus 224 vGpl~~~~~~~----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 224 TGPMFPEPDTS----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred EeecccCcCCC----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 99997643200 11467899999999888999999999999999999999888877788888887643111
Q ss_pred -hhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHH
Q 011142 323 -KELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQI 401 (492)
Q Consensus 323 -~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~ 401 (492)
..... +|++|.+++...|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 294 ~~~~~~--lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~ 371 (442)
T PLN02208 294 STVQEG--LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEE 371 (442)
T ss_pred cchhhh--CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHH
Confidence 11122 899999999889999999999999999999999999999999999999999999999999999999998645
Q ss_pred hccceeecccCCcccccccccccccCHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011142 402 LKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG-KEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 402 ~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (492)
+|+|+.++..+ ++.++.++|.++|+++|+++ +.++.+|++|+++++++. +||||+.++++|++++
T Consensus 372 ~g~gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 372 FEVSVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEEL 437 (442)
T ss_pred hceeEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHH
Confidence 99999997531 12489999999999999876 467899999999999973 3789999999999999
Q ss_pred Hhc
Q 011142 481 MKH 483 (492)
Q Consensus 481 ~~~ 483 (492)
+++
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 764
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=6.2e-63 Score=495.53 Aligned_cols=439 Identities=28% Similarity=0.472 Sum_probs=337.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLA-QRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
+.||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+.+... ...++.+..+|++.. .+++....
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~-~glp~~~~-- 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDI-SGLVDPSA-- 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccc-cCCCCCCc--
Confidence 57999999999999999999999998 78999999999987655432211 112588888876543 24442110
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcccc-c
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSK-V 164 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~-~ 164 (492)
.....+......+.+.+++++++...+|++||+|.+++|+..+|+++|||++.+++++++.+..+.+.+... .
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 78 ------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred ------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 111223333445667788888763347899999999999999999999999999999998887666554211 1
Q ss_pred cc-cCcCCCcccccCCCCCCccccccccCccc-c-c-hhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhh--c--
Q 011142 165 FE-SVSSESEYLVVPCLPDKIEFTTQQVDSSL-G-S-RFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKI--R-- 236 (492)
Q Consensus 165 ~~-~~~~~~~~~~~p~~~~~~~~~~~~l~~~~-~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~-- 236 (492)
.. ....+..+..+|+++. +...+++..+ . . .....+.+......+++++++||+.+||+.+++.++.. +
T Consensus 152 ~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 152 IKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred cccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccc
Confidence 11 0001112345677664 4555666433 1 1 11222333334567789999999999999999988642 1
Q ss_pred --CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEE
Q 011142 237 --HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIW 314 (492)
Q Consensus 237 --~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~ 314 (492)
.+.++.|||+++.... +..+.++.+||+++++++||||||||...++.+++.++..+|+.++++|||
T Consensus 229 ~~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 297 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVW 297 (481)
T ss_pred ccCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 2579999999753210 013567999999988889999999999999999999999999999999999
Q ss_pred EEeCCCc---------------chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcC
Q 011142 315 VIREGET---------------SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAG 379 (492)
Q Consensus 315 ~~~~~~~---------------~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~G 379 (492)
++....+ .+...++ +|++|.+++...|+++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 298 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~G 376 (481)
T PLN02992 298 VVRPPVDGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGG 376 (481)
T ss_pred EEeCCcccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcC
Confidence 9963211 0111122 89999999999999999999999999999999999999999999999999
Q ss_pred CCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Q 011142 380 LPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMA 459 (492)
Q Consensus 380 vP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~ 459 (492)
||||++|+++||+.||+++++++|+|+.++... +.++.++|.++|+++|.++ +++.++++++++++++
T Consensus 377 VP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-----------~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~a 444 (481)
T PLN02992 377 VPMIAWPLFAEQNMNAALLSDELGIAVRSDDPK-----------EVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDTA 444 (481)
T ss_pred CCEEecCccchhHHHHHHHHHHhCeeEEecCCC-----------CcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH
Confidence 999999999999999999955999999997531 2489999999999999864 7889999999999999
Q ss_pred HHHHh--cCCchHHHHHHHHHHHHhccc
Q 011142 460 NMAVQ--EGGSSHLNVTLVIQDIMKHVH 485 (492)
Q Consensus 460 ~~~~~--~gg~~~~~~~~~~~~~~~~~~ 485 (492)
+++++ +||||+.++++|++++.+.-+
T Consensus 445 ~~Av~~~~GGSS~~~l~~~v~~~~~~~~ 472 (481)
T PLN02992 445 EMSLSIDGGGVAHESLCRVTKECQRFLE 472 (481)
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99994 699999999999999987543
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3e-62 Score=490.38 Aligned_cols=435 Identities=28% Similarity=0.457 Sum_probs=325.6
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 80 (492)
|+.+.++.||+++|+|++||++|++.||+.|+.||+.|||++++.+... .. . ...++++..+|. ++|+
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-~----~~~~i~~~~ip~-----glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-D----DFTDFQFVTIPE-----SLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-c----CCCCeEEEeCCC-----CCCc
Confidence 7766678899999999999999999999999999999999999875421 10 0 112477777752 4555
Q ss_pred C-CCccccccccchHHHHHHHHhhhhHHHHHHHHhc----CCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHH
Q 011142 81 G-CENLDMVASLGLAFDFFTAADMLQEPVENFFAQL----KPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVC 155 (492)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 155 (492)
+ ..+. .....+......+...+.+++++. ..++++||+|.++.|+..+|+.+|||++.+++++++.+..
T Consensus 69 ~~~~~~------~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~ 142 (451)
T PLN02410 69 SDFKNL------GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVC 142 (451)
T ss_pred cccccc------CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHH
Confidence 3 1211 111112222224444555555431 2367999999999999999999999999999999998877
Q ss_pred Hhhhccccc----cccCcC-CCcccccCCCCCCccccccccCcccc---chhHHHHHHhhhccCCccEEEEcChhhhcHH
Q 011142 156 YNNLFTSKV----FESVSS-ESEYLVVPCLPDKIEFTTQQVDSSLG---SRFNVFQKKMGAADTGTYGVIVNSFEELEPA 227 (492)
Q Consensus 156 ~~~~~~~~~----~~~~~~-~~~~~~~p~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 227 (492)
+.+...... .+.... ......+|+++. +...+++...+ ..+...+.... ...+++++++|||.+||+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~ 218 (451)
T PLN02410 143 RSVFDKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESS 218 (451)
T ss_pred HHHHHHHHhccCCCCccccccCccccCCCCCC---CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHH
Confidence 665422110 010010 112234666654 34445554321 11222222222 3467889999999999999
Q ss_pred HHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh
Q 011142 228 YIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA 307 (492)
Q Consensus 228 ~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~ 307 (492)
+++++....+++++.|||++....... ..+....++.+||+++++++||||||||....+.+++.++..+|+.
T Consensus 219 ~~~~l~~~~~~~v~~vGpl~~~~~~~~-------~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~ 291 (451)
T PLN02410 219 SLSRLQQQLQIPVYPIGPLHLVASAPT-------SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDS 291 (451)
T ss_pred HHHHHHhccCCCEEEecccccccCCCc-------cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHh
Confidence 999998767778999999976432100 0011234678999999888999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCc-chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccC
Q 011142 308 SNRPFIWVIREGET-SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWP 386 (492)
Q Consensus 308 ~~~~vv~~~~~~~~-~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P 386 (492)
.+.+|||+++.... ..+.... +|++|.+++. .|.++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 292 s~~~FlWv~r~~~~~~~~~~~~-lp~~f~er~~-~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P 369 (451)
T PLN02410 292 SNQQFLWVIRPGSVRGSEWIES-LPKEFSKIIS-GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKP 369 (451)
T ss_pred cCCCeEEEEccCcccccchhhc-CChhHHHhcc-CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecc
Confidence 99999999974321 0111111 7899988874 5667779999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcC
Q 011142 387 LFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEG 466 (492)
Q Consensus 387 ~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~g 466 (492)
++.||+.||+++++.+|+|+.+.. .++.++|.++|+++|.+++ +++||++|++|++++++++++|
T Consensus 370 ~~~DQ~~na~~~~~~~~~G~~~~~--------------~~~~~~v~~av~~lm~~~~-~~~~r~~a~~l~~~~~~a~~~g 434 (451)
T PLN02410 370 FSSDQKVNARYLECVWKIGIQVEG--------------DLDRGAVERAVKRLMVEEE-GEEMRKRAISLKEQLRASVISG 434 (451)
T ss_pred ccccCHHHHHHHHHHhCeeEEeCC--------------cccHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999645599999973 3899999999999998754 8899999999999999999999
Q ss_pred CchHHHHHHHHHHHH
Q 011142 467 GSSHLNVTLVIQDIM 481 (492)
Q Consensus 467 g~~~~~~~~~~~~~~ 481 (492)
|||+.++++|++++.
T Consensus 435 GsS~~~l~~fv~~~~ 449 (451)
T PLN02410 435 GSSHNSLEEFVHFMR 449 (451)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999875
No 7
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.7e-62 Score=484.89 Aligned_cols=440 Identities=25% Similarity=0.404 Sum_probs=336.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
.++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... . . ....+.+..+++|.. +++|.+.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~--~~~~~~v~~~~~p~~-~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-L--FPHNIVFRSVTVPHV-DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-c--CCCCceEEEEECCCc-CCCCCccccc
Confidence 368999999999999999999999999999999999999876555431 1 0 111233444444432 3677664433
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcccccc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVF 165 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (492)
.... ......+........+.+.+++++ .+||+||+|. +.|+..+|+.+|||++.+++++++.+..+.. +.
T Consensus 79 ~~~~-~~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~---- 149 (453)
T PLN02764 79 SEIP-VTSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG---- 149 (453)
T ss_pred ccCC-hhHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----
Confidence 2222 122344555556778889999988 6889999994 7899999999999999999999988877642 11
Q ss_pred ccCcCCCcccccCCCCCCc-cccccccCcccc-------chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcC
Q 011142 166 ESVSSESEYLVVPCLPDKI-EFTTQQVDSSLG-------SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRH 237 (492)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~-~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 237 (492)
... ...+|+++... .+..+.++.... ..+..+...+......++++++|||.+||+.+++++....+
T Consensus 150 ~~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~ 224 (453)
T PLN02764 150 GEL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCR 224 (453)
T ss_pred ccC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcC
Confidence 011 11235665311 123333332211 11333444443456678899999999999999999977555
Q ss_pred CcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEe
Q 011142 238 DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIR 317 (492)
Q Consensus 238 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~ 317 (492)
++++.|||+++..... ...+.++.+|||++++++||||||||...++.+++.++..+|+..+.+|+|.++
T Consensus 225 ~~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r 294 (453)
T PLN02764 225 KKVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVK 294 (453)
T ss_pred CcEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 7899999997542100 012467999999999999999999999999999999999999999999999998
Q ss_pred CCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHH
Q 011142 318 EGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKL 397 (492)
Q Consensus 318 ~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~r 397 (492)
......+...+ +|++|.+++...++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++
T Consensus 295 ~~~~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~ 373 (453)
T PLN02764 295 PPRGSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRL 373 (453)
T ss_pred CCCCCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHH
Confidence 53211111122 89999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 011142 398 VVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG-KEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLV 476 (492)
Q Consensus 398 v~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 476 (492)
+++.+|+|+.+...+ .+.++.++|.++|+++|+++ +.++.+|+++++++++++ +||||+.++++|
T Consensus 374 l~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~l 439 (453)
T PLN02764 374 LSDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNF 439 (453)
T ss_pred HHHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHH
Confidence 964689998875320 01489999999999999876 467889999999999984 579999999999
Q ss_pred HHHHHhccccccc
Q 011142 477 IQDIMKHVHSTSQ 489 (492)
Q Consensus 477 ~~~~~~~~~~~~~ 489 (492)
+++++...+.||.
T Consensus 440 v~~~~~~~~~~~~ 452 (453)
T PLN02764 440 IESLQDLVSGTSH 452 (453)
T ss_pred HHHHHHhcccccC
Confidence 9999999887763
No 8
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=7e-62 Score=492.78 Aligned_cols=448 Identities=27% Similarity=0.464 Sum_probs=338.3
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCC----CeEEEEeCCcchh----hhhhHHHhhhhcCCceEEEEecCCcccc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRG----VIITIVTTPVNAA----RFNGILARAIESGLQIKIVQFQLPCEEA 76 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rG----H~Vt~~~~~~~~~----~v~~~~~~~~~~~~~i~~~~~~~~~~~~ 76 (492)
|.+.||+++|+|++||++|++.||+.|+.|| +.|||++++.+.+ .+..........+..+.++.+|.+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE--- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---
Confidence 3567999999999999999999999999997 7999999876432 2333221111112258888887431
Q ss_pred CCCCCCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHH
Q 011142 77 GLPEGCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCY 156 (492)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 156 (492)
++.+.+. ....+......+.+.+++++++...++++||+|.+++|+..+|+++|||++.|+++++..+..+
T Consensus 78 -~p~~~e~--------~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~ 148 (480)
T PLN00164 78 -PPTDAAG--------VEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALM 148 (480)
T ss_pred -CCCcccc--------HHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 2322211 1122233444667778888876323569999999999999999999999999999999998887
Q ss_pred hhhcccccccc--CcCCCcccccCCCCCCccccccccCcccc--c-hhHHHHHHhhhccCCccEEEEcChhhhcHHHHHH
Q 011142 157 NNLFTSKVFES--VSSESEYLVVPCLPDKIEFTTQQVDSSLG--S-RFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKE 231 (492)
Q Consensus 157 ~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 231 (492)
.+.+....... ......+..+|+++. +...+++..++ . .....+....+...+++++++|||.+||+.+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 149 LRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 77643211100 010012334677764 55666765442 1 1112222333455778999999999999999998
Q ss_pred HHhhc------CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHH
Q 011142 232 YKKIR------HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGL 305 (492)
Q Consensus 232 ~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~ 305 (492)
++... .++++.|||++....... ....++++.+||++++++++|||||||....+.+++.+++.++
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~~~--------~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFTPP--------AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred HHhccccccCCCCceEEeCCCccccccCC--------CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 87642 158999999974321100 0113567999999998889999999999889999999999999
Q ss_pred HhCCCCeEEEEeCCCc-------chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhc
Q 011142 306 EASNRPFIWVIREGET-------SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSA 378 (492)
Q Consensus 306 ~~~~~~vv~~~~~~~~-------~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~ 378 (492)
+..+++|||+++.... ......+ +|++|.+++...++++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~ 376 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWH 376 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHc
Confidence 9999999999975321 0112223 7889998888889999899999999999999999999999999999999
Q ss_pred CCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChh-hHHHHHHHHHHHH
Q 011142 379 GLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKE-GEERRNRAVKLGQ 457 (492)
Q Consensus 379 GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~-~~~~~~~a~~l~~ 457 (492)
|||||++|+++||+.||+++++.+|+|+.+...+ ++++.++.++|.++|+++|.+++| ++.+|++|++|++
T Consensus 377 GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~--------~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~ 448 (480)
T PLN00164 377 GVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR--------KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKA 448 (480)
T ss_pred CCCEEeCCccccchhHHHHHHHHhCeEEEecccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999998755789999985431 011247999999999999988764 8899999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcc
Q 011142 458 MANMAVQEGGSSHLNVTLVIQDIMKHV 484 (492)
Q Consensus 458 ~~~~~~~~gg~~~~~~~~~~~~~~~~~ 484 (492)
++++++++||||+.++++|+++++...
T Consensus 449 ~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 449 ACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998643
No 9
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.6e-62 Score=485.22 Aligned_cols=439 Identities=26% Similarity=0.455 Sum_probs=335.6
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhh--hHHHhhhhcCCceEEEEecCCccccCC-CCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFN--GILARAIESGLQIKIVQFQLPCEEAGL-PEG 81 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~--~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~ 81 (492)
.+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. ....... ...++++..+|++.. +++ +.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCC
Confidence 45699999999999999999999999987 99999999876554331 1111110 112488888875532 133 211
Q ss_pred CCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCC-eEEEecchHHHHHHHhhhc
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIP-RITFHGTCCFCLVCYNNLF 160 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~ 160 (492)
. .....+......+.+.+++++++...++++||+|.+++|+..+|+++||| .+.++++.++.+..+.+.+
T Consensus 80 --------~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~ 150 (470)
T PLN03015 80 --------A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLP 150 (470)
T ss_pred --------c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhh
Confidence 0 22234555556778888999887434789999999999999999999999 5777788887776666654
Q ss_pred ccccc-cc-CcCCCcccccCCCCCCccccccccCcccc--c--hhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHh
Q 011142 161 TSKVF-ES-VSSESEYLVVPCLPDKIEFTTQQVDSSLG--S--RFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKK 234 (492)
Q Consensus 161 ~~~~~-~~-~~~~~~~~~~p~~~~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 234 (492)
..... .. ......+..+|+++. +...+++..++ . .+..+. ...+...+++++++|||.+||+.+++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~ 226 (470)
T PLN03015 151 VLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALRE 226 (470)
T ss_pred hhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 32111 11 001012455788865 66667765442 1 133333 333346789999999999999999998876
Q ss_pred hc------CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC
Q 011142 235 IR------HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS 308 (492)
Q Consensus 235 ~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~ 308 (492)
.+ .+.++.|||++..... ...+.++.+||+++++++||||||||...++.+++.++..+|+.+
T Consensus 227 ~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s 295 (470)
T PLN03015 227 DMELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELS 295 (470)
T ss_pred hcccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhC
Confidence 42 2569999999742110 012457999999998899999999999999999999999999999
Q ss_pred CCCeEEEEeCCCc--------chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCC
Q 011142 309 NRPFIWVIREGET--------SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGL 380 (492)
Q Consensus 309 ~~~vv~~~~~~~~--------~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~Gv 380 (492)
+++|||+++.... ..+..++ +|++|.+++...++++.+|+||.+||+|+++++|||||||||++|++++||
T Consensus 296 ~~~FlWv~r~~~~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~Gv 374 (470)
T PLN03015 296 GQRFVWVLRRPASYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGV 374 (470)
T ss_pred CCcEEEEEecCccccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCC
Confidence 9999999974211 1112223 899999998888888889999999999999999999999999999999999
Q ss_pred CeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHHH
Q 011142 381 PLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDE-GKEGEERRNRAVKLGQMA 459 (492)
Q Consensus 381 P~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~-~~~~~~~~~~a~~l~~~~ 459 (492)
|||++|++.||+.||+++++.+|+|+.+.... ....++.++|.++|+++|.+ +++++++|+||++|++++
T Consensus 375 P~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~---------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a 445 (470)
T PLN03015 375 PIVAWPLYAEQWMNATLLTEEIGVAVRTSELP---------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSS 445 (470)
T ss_pred CEEecccccchHHHHHHHHHHhCeeEEecccc---------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999977999999985210 01258999999999999963 356889999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHH
Q 011142 460 NMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 460 ~~~~~~gg~~~~~~~~~~~~~ 480 (492)
++++++||||+.++++|++++
T Consensus 446 ~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 446 ERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHhcCCCcHHHHHHHHHHhc
Confidence 999999999999999999886
No 10
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.7e-61 Score=486.48 Aligned_cols=454 Identities=26% Similarity=0.492 Sum_probs=334.7
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHH---Hh-hhhcCC-ceEEEEecCCccc
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGIL---AR-AIESGL-QIKIVQFQLPCEE 75 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~---~~-~~~~~~-~i~~~~~~~~~~~ 75 (492)
|+++....||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.... .. ....+. .+.|..++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 888888899999999999999999999999999999999999997666554211 00 000111 14444332
Q ss_pred cCCCCCCCccccccccchHHHHHHHH-hhhhHHHHHHHHhcC--CCC-cEEEEcCCCccHHHHHHHcCCCeEEEecchHH
Q 011142 76 AGLPEGCENLDMVASLGLAFDFFTAA-DMLQEPVENFFAQLK--PRP-NCIISDMCLPYTAHIAGKFNIPRITFHGTCCF 151 (492)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~--~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 151 (492)
+++|.+.+.. . ... .+.... ..+.+.+.+++++.. .+| ++||+|.++.|+..+|+++|||.+.+++++++
T Consensus 76 dglp~~~~~~---~--~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 76 DGWAEDDPRR---Q--DLD-LYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred CCCCCCcccc---c--CHH-HHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHH
Confidence 3565543211 1 111 223322 245666777666421 244 99999999999999999999999999999999
Q ss_pred HHHHHhhhcccc-ccccCcCCCcccccCCCCCCccccccccCccccc-----hhHHHHHHhhhccCCccEEEEcChhhhc
Q 011142 152 CLVCYNNLFTSK-VFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGS-----RFNVFQKKMGAADTGTYGVIVNSFEELE 225 (492)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 225 (492)
.+..+.+.+... .......+..+..+|+++. +...+++.+++. .+...+....+...+++++++|||.+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE 226 (480)
T PLN02555 150 CFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELE 226 (480)
T ss_pred HHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHh
Confidence 988877764221 1111111113345788865 566677665431 1122223333456678899999999999
Q ss_pred HHHHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHH
Q 011142 226 PAYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGL 305 (492)
Q Consensus 226 ~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~ 305 (492)
+.+++.+.... + ++.|||++........ ..+...+..+.++.+||++++++++|||||||....+.+++.+++.++
T Consensus 227 ~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l 302 (480)
T PLN02555 227 KEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGV 302 (480)
T ss_pred HHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHH
Confidence 99999886644 4 9999999754211100 000100123567999999998888999999999999999999999999
Q ss_pred HhCCCCeEEEEeCCCcchhh-hhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeec
Q 011142 306 EASNRPFIWVIREGETSKEL-KKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLT 384 (492)
Q Consensus 306 ~~~~~~vv~~~~~~~~~~~~-~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~ 384 (492)
+..+++|||+++........ ... +|+++.++. +.|+++++|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 303 ~~~~~~flW~~~~~~~~~~~~~~~-lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~ 380 (480)
T PLN02555 303 LNSGVSFLWVMRPPHKDSGVEPHV-LPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVC 380 (480)
T ss_pred HhcCCeEEEEEecCcccccchhhc-CChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEe
Confidence 99999999998743110000 011 788887665 467788899999999999999999999999999999999999999
Q ss_pred cCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHh
Q 011142 385 WPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQ 464 (492)
Q Consensus 385 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~ 464 (492)
+|+++||+.||+++++.+|+|+.+.... + ....++.++|.++|+++|.+ ++++++|+||++|+++++++++
T Consensus 381 ~P~~~DQ~~Na~~~~~~~gvGv~l~~~~------~--~~~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~~a~~A~~ 451 (480)
T PLN02555 381 FPQWGDQVTDAVYLVDVFKTGVRLCRGE------A--ENKLITREEVAECLLEATVG-EKAAELKQNALKWKEEAEAAVA 451 (480)
T ss_pred CCCccccHHHHHHHHHHhCceEEccCCc------c--ccCcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999975569999995310 0 01258999999999999976 4678999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHhc
Q 011142 465 EGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 465 ~gg~~~~~~~~~~~~~~~~ 483 (492)
+||||+.++++||+++...
T Consensus 452 egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 452 EGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 11
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-61 Score=482.49 Aligned_cols=432 Identities=26% Similarity=0.429 Sum_probs=324.3
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCC-C
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGC-E 83 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~ 83 (492)
.++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ...+++++.++ +++|++. +
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~ 71 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFS 71 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccc
Confidence 3457999999999999999999999999999999999998765544221 12358888876 2566532 2
Q ss_pred ccccccccchHHHHHHHHhhhhHHHHHHHHhc--CCCC-cEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhc
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEPVENFFAQL--KPRP-NCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLF 160 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 160 (492)
... .....+......+.+.+++++++. ..+| ++||+|.+++|+..+|+.+|||.+.+++++++.+..+.+.
T Consensus 72 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~- 145 (449)
T PLN02173 72 SAG-----SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS- 145 (449)
T ss_pred ccc-----CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-
Confidence 111 112222223335666777777652 1255 9999999999999999999999999999888777654432
Q ss_pred cccccccCcCCCcccccCCCCCCccccccccCcccc-----chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhh
Q 011142 161 TSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLG-----SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKI 235 (492)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 235 (492)
.... . .....+|+++. +...+++.+++ ..+...+.+..+...+++++++||+.+||+.+++.++..
T Consensus 146 ~~~~----~--~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 216 (449)
T PLN02173 146 YINN----G--SLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV 216 (449)
T ss_pred Hhcc----C--CccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc
Confidence 1100 0 12233567664 45566665442 112222223344567789999999999999999988653
Q ss_pred cCCcEEEeccCCCCCc-ccchhhhcCCC--CC--cchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCC
Q 011142 236 RHDKVWCIGPVSLSNK-EYSDKAQRGNK--AS--VDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNR 310 (492)
Q Consensus 236 ~~~~~~~vGp~~~~~~-~~~~~~~~~~~--~~--~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~ 310 (492)
++++.|||+++... ........+.. .+ ..++++.+||+.++++++|||||||....+.+++.+++.++ .+.
T Consensus 217 --~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 217 --CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred --CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 46999999974311 00000000000 00 12346899999998889999999999999999999999999 667
Q ss_pred CeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccc
Q 011142 311 PFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGD 390 (492)
Q Consensus 311 ~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~D 390 (492)
+|+|++...... . +|+++.++..+.|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 293 ~flWvvr~~~~~----~--lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 366 (449)
T PLN02173 293 SYLWVVRASEES----K--LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTD 366 (449)
T ss_pred CEEEEEeccchh----c--ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhc
Confidence 899999753211 1 7888888876788999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchH
Q 011142 391 QFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSH 470 (492)
Q Consensus 391 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 470 (492)
|+.||+++++.+|+|+.+..++ .+..++.++|.++|+++|.++ +++++|+||+++++++++++++||||+
T Consensus 367 Q~~Na~~v~~~~g~Gv~v~~~~---------~~~~~~~e~v~~av~~vm~~~-~~~~~r~~a~~~~~~a~~Av~~gGSS~ 436 (449)
T PLN02173 367 QPMNAKYIQDVWKVGVRVKAEK---------ESGIAKREEIEFSIKEVMEGE-KSKEMKENAGKWRDLAVKSLSEGGSTD 436 (449)
T ss_pred chHHHHHHHHHhCceEEEeecc---------cCCcccHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999999974559999886531 112369999999999999864 468999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 011142 471 LNVTLVIQDIMK 482 (492)
Q Consensus 471 ~~~~~~~~~~~~ 482 (492)
.++++|+++++.
T Consensus 437 ~~l~~~v~~~~~ 448 (449)
T PLN02173 437 ININTFVSKIQI 448 (449)
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.2e-61 Score=487.90 Aligned_cols=441 Identities=28% Similarity=0.495 Sum_probs=325.8
Q ss_pred CCCC-CCccEEEEecCCCcCCHHHHHHHHHH--HHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccC
Q 011142 1 MDTQ-ANQLHFVLFPFLAQGHMIPMIDIARL--LAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAG 77 (492)
Q Consensus 1 m~~~-~~~~~il~~~~~~~GH~~p~l~LA~~--L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~ 77 (492)
|++. .+..||+++|+|++||++|++.||+. |++||++|||++++.+...++.. .. ....+.+..++ ++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~~---~~~~~~~~~~~-----~g 71 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-EK---PRRPVDLVFFS-----DG 71 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-cC---CCCceEEEECC-----CC
Confidence 5543 44689999999999999999999999 56999999999999876654321 10 11234444433 25
Q ss_pred CCCCCCccccccccchHHHHHHHH-hhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHH
Q 011142 78 LPEGCENLDMVASLGLAFDFFTAA-DMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCY 156 (492)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 156 (492)
+|++... ... .+.... +...+.+++++++ .+||+||+|.++.|+..+|+.+|||.+.+++.++..+..+
T Consensus 72 lp~~~~~-------~~~-~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~ 141 (456)
T PLN02210 72 LPKDDPR-------APE-TLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVY 141 (456)
T ss_pred CCCCccc-------CHH-HHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHH
Confidence 6654321 111 222333 3556778888888 7899999999999999999999999999999998888776
Q ss_pred hhhccc-cccccCcCCCcccccCCCCCCccccccccCccccc----hhHHHHHHhhhccCCccEEEEcChhhhcHHHHHH
Q 011142 157 NNLFTS-KVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGS----RFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKE 231 (492)
Q Consensus 157 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 231 (492)
.+.... ...........+..+|+++. +...+++..++. .+...+..+.+....++++++||+.+||+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 218 (456)
T PLN02210 142 YRYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIES 218 (456)
T ss_pred HhhhhccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHH
Confidence 654221 11111111112334677653 455566654421 1223333444445667899999999999999998
Q ss_pred HHhhcCCcEEEeccCCCCC---cccchhhhcCCC--CCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH
Q 011142 232 YKKIRHDKVWCIGPVSLSN---KEYSDKAQRGNK--ASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLE 306 (492)
Q Consensus 232 ~~~~~~~~~~~vGp~~~~~---~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~ 306 (492)
++. . +++++|||+++.. ...... ..+.. .+..+.++.+|++.++++++|||||||....+.+++.+++.+|+
T Consensus 219 l~~-~-~~v~~VGPl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~ 295 (456)
T PLN02210 219 MAD-L-KPVIPIGPLVSPFLLGDDEEET-LDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALK 295 (456)
T ss_pred Hhh-c-CCEEEEcccCchhhcCcccccc-cccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 876 3 5799999997421 100000 00000 01235678999999888899999999999999999999999999
Q ss_pred hCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccC
Q 011142 307 ASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWP 386 (492)
Q Consensus 307 ~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P 386 (492)
..+++|||+++...... .++.+.++....+.++.+|+||.+||+|+++++|||||||||++|++++|||||++|
T Consensus 296 ~~~~~flw~~~~~~~~~------~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P 369 (456)
T PLN02210 296 NRGVPFLWVIRPKEKAQ------NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYP 369 (456)
T ss_pred hCCCCEEEEEeCCcccc------chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 99999999997532111 234454544334556779999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcC
Q 011142 387 LFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEG 466 (492)
Q Consensus 387 ~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~g 466 (492)
+++||+.||+++++.+|+|+.+...+ .++.++.++|.++|+++|.+ +.++++|+||++|++.+++++++|
T Consensus 370 ~~~DQ~~na~~~~~~~g~G~~l~~~~---------~~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~g 439 (456)
T PLN02210 370 SWTDQPIDARLLVDVFGIGVRMRNDA---------VDGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPG 439 (456)
T ss_pred cccccHHHHHHHHHHhCeEEEEeccc---------cCCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999963399999986421 01258999999999999976 457789999999999999999999
Q ss_pred CchHHHHHHHHHHHHh
Q 011142 467 GSSHLNVTLVIQDIMK 482 (492)
Q Consensus 467 g~~~~~~~~~~~~~~~ 482 (492)
|||+.++++|++++..
T Consensus 440 GSS~~~l~~~v~~~~~ 455 (456)
T PLN02210 440 GSSARNLDLFISDITI 455 (456)
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999999999875
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5e-61 Score=480.89 Aligned_cols=439 Identities=24% Similarity=0.409 Sum_probs=331.2
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
.++.||+++|+|++||++|++.||+.|+++|++|||++++.+...+..... ....+.+..+++|.. +++|.+.+.
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~ 76 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAET 76 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCcccc
Confidence 346799999999999999999999999999999999999987665543210 112478877776643 367776433
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKV 164 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 164 (492)
...... .....+......+.+.++++++. .+||+||+|. ++|+..+|+.+|||++.++++++..+..+.+. ..
T Consensus 77 ~~~l~~-~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~-~~-- 149 (446)
T PLN00414 77 ASDLPN-STKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAP-RA-- 149 (446)
T ss_pred cccchh-hHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCc-Hh--
Confidence 221111 12334555556778888888877 7899999995 78999999999999999999999888776552 10
Q ss_pred cccCcCCCcccccCCCCCC-ccccccc--cCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEE
Q 011142 165 FESVSSESEYLVVPCLPDK-IEFTTQQ--VDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVW 241 (492)
Q Consensus 165 ~~~~~~~~~~~~~p~~~~~-~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 241 (492)
... ..+|+++.. +.+...+ ++..+.. ....+....+...+++++++|||.+||+.+++.++..+++.++
T Consensus 150 --~~~-----~~~pg~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~ 221 (446)
T PLN00414 150 --ELG-----FPPPDYPLSKVALRGHDANVCSLFAN-SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVL 221 (446)
T ss_pred --hcC-----CCCCCCCCCcCcCchhhcccchhhcc-cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeE
Confidence 000 112454431 1111111 2222211 1123333344556789999999999999999998876666899
Q ss_pred EeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCc
Q 011142 242 CIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGET 321 (492)
Q Consensus 242 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~ 321 (492)
.|||+.+.... .. + .....++.+|||++++++||||||||....+.+++.++..+|+..+.+|+|.+.....
T Consensus 222 ~VGPl~~~~~~-~~----~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~ 293 (446)
T PLN00414 222 LTGPMLPEPQN-KS----G---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKG 293 (446)
T ss_pred EEcccCCCccc-cc----C---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Confidence 99999753211 00 0 1124568899999999999999999999999999999999999999999999975321
Q ss_pred chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHH
Q 011142 322 SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQI 401 (492)
Q Consensus 322 ~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~ 401 (492)
..+...+ +|++|.+++...++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.
T Consensus 294 ~~~~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~ 372 (446)
T PLN00414 294 SSTVQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE 372 (446)
T ss_pred cccchhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHH
Confidence 1111122 899999999888888889999999999999999999999999999999999999999999999999999657
Q ss_pred hccceeecccCCcccccccccccccCHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011142 402 LKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG-KEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 402 ~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (492)
+|+|+.+...+ ++.++.++|.++|+++|.++ +.++++|++|+++++.+. ++||++.. +++|++++
T Consensus 373 ~g~g~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~ss~-l~~~v~~~ 438 (446)
T PLN00414 373 LEVSVKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLSGY-ADKFVEAL 438 (446)
T ss_pred hCeEEEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcHHH-HHHHHHHH
Confidence 99999986420 12489999999999999875 457889999999999964 66884433 89999999
Q ss_pred Hhcccc
Q 011142 481 MKHVHS 486 (492)
Q Consensus 481 ~~~~~~ 486 (492)
..+...
T Consensus 439 ~~~~~~ 444 (446)
T PLN00414 439 ENEVNN 444 (446)
T ss_pred HHhccc
Confidence 776543
No 14
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=6e-61 Score=480.38 Aligned_cols=449 Identities=24% Similarity=0.453 Sum_probs=328.5
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCCcch-hhhhhHHHhhhhcCCceEEEEecCCccccCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRG--VIITIVTTPVNA-ARFNGILARAIESGLQIKIVQFQLPCEEAGLPEG 81 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 81 (492)
|++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+...+........++++..+|.... .+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc
Confidence 4567999999999999999999999999998 999999998764 223322221111112588998873211 1110
Q ss_pred CCccccccccchHHHHHHHHhhh----hHHHHHHHHhcC--CCC-cEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHH
Q 011142 82 CENLDMVASLGLAFDFFTAADML----QEPVENFFAQLK--PRP-NCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLV 154 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~ll~~~~--~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 154 (492)
.. . .+....+....... .+.+.+++++.. .+| ++||+|.+++|+..+|+++|||.+.++++++..+.
T Consensus 78 -~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~ 151 (468)
T PLN02207 78 -GG---T--QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLA 151 (468)
T ss_pred -cc---c--cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHH
Confidence 00 0 01222233333233 445666665421 234 89999999999999999999999999999998888
Q ss_pred HHhhhccccccc-cC--cCCCcccccCCCCCCccccccccCcccc--chhHHHHHHhhhccCCccEEEEcChhhhcHHHH
Q 011142 155 CYNNLFTSKVFE-SV--SSESEYLVVPCLPDKIEFTTQQVDSSLG--SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYI 229 (492)
Q Consensus 155 ~~~~~~~~~~~~-~~--~~~~~~~~~p~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 229 (492)
.+.+.+...... .. +....+..+|+++.. +...+++..+. ..+..+. +.....++++++++||+.+||++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~--l~~~dlp~~~~~~~~~~~~~-~~~~~~~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 152 MMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP--VPANVLPSALFVEDGYDAYV-KLAILFTKANGILVNSSFDIEPYSV 228 (468)
T ss_pred HHHHhhhccccccccCcCCCCCeEECCCCCCC--CChHHCcchhcCCccHHHHH-HHHHhcccCCEEEEEchHHHhHHHH
Confidence 776664321111 11 111123457787321 56677776552 2233333 3334567889999999999999988
Q ss_pred HHHHh-hcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC
Q 011142 230 KEYKK-IRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS 308 (492)
Q Consensus 230 ~~~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~ 308 (492)
+.++. ...++++.|||++........ ......++++.+||++++++++|||||||....+.+++.+++.+|+.+
T Consensus 229 ~~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~ 303 (468)
T PLN02207 229 NHFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELC 303 (468)
T ss_pred HHHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHC
Confidence 88854 334789999999764321100 000012367999999998889999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCc
Q 011142 309 NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 309 ~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~ 388 (492)
+++|||+++..... ..++ +|++|.++.. .|..+++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 304 ~~~flW~~r~~~~~--~~~~-lp~~f~er~~-~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~ 379 (468)
T PLN02207 304 QYRFLWSLRTEEVT--NDDL-LPEGFLDRVS-GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY 379 (468)
T ss_pred CCcEEEEEeCCCcc--cccc-CCHHHHhhcC-CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcc
Confidence 99999999853211 1122 8888887764 566778999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCc
Q 011142 389 GDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGS 468 (492)
Q Consensus 389 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 468 (492)
+||+.||+++++.+|+|+.+..+. .+ +.+..++.++|.++|+++|.+ ++++||+||++|++++++++++|||
T Consensus 380 ~DQ~~Na~~~~~~~gvGv~~~~~~--~~----~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~~~GGS 451 (468)
T PLN02207 380 AEQQLNAFLMVKELKLAVELKLDY--RV----HSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRATKNGGS 451 (468)
T ss_pred ccchhhHHHHHHHhCceEEEeccc--cc----ccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999998865599999874320 00 001246999999999999963 3569999999999999999999999
Q ss_pred hHHHHHHHHHHHHh
Q 011142 469 SHLNVTLVIQDIMK 482 (492)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (492)
|+.++++|++++..
T Consensus 452 S~~~l~~~v~~~~~ 465 (468)
T PLN02207 452 SFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.9e-61 Score=480.43 Aligned_cols=456 Identities=31% Similarity=0.495 Sum_probs=337.4
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 80 (492)
|.++. +.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+.+.... ...+++++.+++|.. +++|.
T Consensus 1 ~~~~~-~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~-dglp~ 75 (472)
T PLN02670 1 MKREE-VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSV-PGLPS 75 (472)
T ss_pred CCCCC-CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCcc-CCCCC
Confidence 44333 57999999999999999999999999999999999999876655432111 122589999987654 37776
Q ss_pred CCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhc
Q 011142 81 GCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLF 160 (492)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 160 (492)
+.++...... .....+....+.+.+.+++++++ .++++||+|.++.|+..+|+++|||++.++++++..+..+.+..
T Consensus 76 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~ 152 (472)
T PLN02670 76 SAESSTDVPY-TKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPS 152 (472)
T ss_pred Ccccccccch-hhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhH
Confidence 5443221110 11223445556778888899988 68999999999999999999999999999999988877754332
Q ss_pred cccccccCcCCCccc-ccCCC-CC--CccccccccCcccc--c---h-hHHHHHHhhhccCCccEEEEcChhhhcHHHHH
Q 011142 161 TSKVFESVSSESEYL-VVPCL-PD--KIEFTTQQVDSSLG--S---R-FNVFQKKMGAADTGTYGVIVNSFEELEPAYIK 230 (492)
Q Consensus 161 ~~~~~~~~~~~~~~~-~~p~~-~~--~~~~~~~~l~~~~~--~---~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 230 (492)
............... .+|++ +. .+.+...+++.+++ . . +..+. +......+++++++|||.+||+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 153 SLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred hhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 111111111111111 13332 21 11234455555442 1 1 22223 33334567889999999999999999
Q ss_pred HHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCC
Q 011142 231 EYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNR 310 (492)
Q Consensus 231 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~ 310 (492)
.++..++++++.|||+.+....... ..........++.+||+++++++||||||||...++.+++.+++.+|+.+++
T Consensus 232 ~l~~~~~~~v~~VGPl~~~~~~~~~---~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 232 LLSDLYRKPIIPIGFLPPVIEDDEE---DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred HHHHhhCCCeEEEecCCcccccccc---ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 9977666789999999653110000 0000000125799999999888999999999999999999999999999999
Q ss_pred CeEEEEeCCCc-chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCcc
Q 011142 311 PFIWVIREGET-SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFG 389 (492)
Q Consensus 311 ~vv~~~~~~~~-~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~ 389 (492)
+|||++..... ..+...+ +|++|.+++...++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 309 ~FlWv~r~~~~~~~~~~~~-lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~ 387 (472)
T PLN02670 309 PFFWVLRNEPGTTQNALEM-LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLN 387 (472)
T ss_pred CEEEEEcCCcccccchhhc-CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchh
Confidence 99999975321 1111122 899999998888899899999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCch
Q 011142 390 DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSS 469 (492)
Q Consensus 390 DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 469 (492)
||+.||+++ +++|+|+.+...+ .++.++.++|.++|+++|.| +++++||+||+++++++++. +..
T Consensus 388 DQ~~Na~~v-~~~g~Gv~l~~~~---------~~~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~~~----~~~ 452 (472)
T PLN02670 388 EQGLNTRLL-HGKKLGLEVPRDE---------RDGSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFGDM----DRN 452 (472)
T ss_pred ccHHHHHHH-HHcCeeEEeeccc---------cCCcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHhCc----chh
Confidence 999999999 5999999996531 01248999999999999976 45779999999999998844 445
Q ss_pred HHHHHHHHHHHHhcc
Q 011142 470 HLNVTLVIQDIMKHV 484 (492)
Q Consensus 470 ~~~~~~~~~~~~~~~ 484 (492)
.+.+++|++++....
T Consensus 453 ~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 453 NRYVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHHHHhc
Confidence 789999999998877
No 16
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-60 Score=476.62 Aligned_cols=432 Identities=26% Similarity=0.467 Sum_probs=316.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEE--EeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRG--VIITI--VTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGC 82 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~--~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 82 (492)
.-||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+...+........++++..++++.. .+.+.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcc
Confidence 34899999999999999999999999998 45555 4444322222211111111112588888875421 11111
Q ss_pred CccccccccchHHHHHHHHhhhhHHHHHHHHhcC--CCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhc
Q 011142 83 ENLDMVASLGLAFDFFTAADMLQEPVENFFAQLK--PRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLF 160 (492)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 160 (492)
.. .......+..........+.+++++.. .++++||+|.+++|+..+|+.+|||.+.+++++++.+..+.+.+
T Consensus 80 ~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 80 TS-----RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred cc-----ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 11 011122233333455555666666521 24599999999999999999999999999999999998887754
Q ss_pred cccccc-cCc-CCCcccccCCCCCCccccccccCcccc-c--hhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhh
Q 011142 161 TSKVFE-SVS-SESEYLVVPCLPDKIEFTTQQVDSSLG-S--RFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKI 235 (492)
Q Consensus 161 ~~~~~~-~~~-~~~~~~~~p~~~~~~~~~~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 235 (492)
...... ... ....+..+|+++. +...+++..++ . .....+........+++++++|||.+||+.+++.+...
T Consensus 155 ~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 155 TIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred hccccccccccccCCeecCCCCCC---CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 321100 000 0112345677765 55667776553 1 12233344444566788999999999999999998765
Q ss_pred cC-CcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEE
Q 011142 236 RH-DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIW 314 (492)
Q Consensus 236 ~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~ 314 (492)
+. ++++.|||++....... .. ...+.++.+||+++++++||||||||...++.+++.+|..+|+.++++|||
T Consensus 232 ~~~~~v~~vGPl~~~~~~~~-----~~--~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 232 LCFRNIYPIGPLIVNGRIED-----RN--DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CCCCCEEEEeeeccCccccc-----cc--cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 43 68999999974321100 00 012356899999998899999999999999999999999999999999999
Q ss_pred EEeCCCcc----hhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccc
Q 011142 315 VIREGETS----KELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGD 390 (492)
Q Consensus 315 ~~~~~~~~----~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~D 390 (492)
+++..... .....+ +|++|.+++...|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.|
T Consensus 305 ~~r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~D 383 (451)
T PLN03004 305 VVRNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAE 383 (451)
T ss_pred EEcCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccccc
Confidence 99853110 011223 7899999998899999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchH
Q 011142 391 QFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSH 470 (492)
Q Consensus 391 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 470 (492)
|+.||+++++++|+|+.++..+ ++.++.++|.++|+++|.|+ +|+++++++++++++++++||||+
T Consensus 384 Q~~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGSS~ 449 (451)
T PLN03004 384 QRFNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGSSH 449 (451)
T ss_pred chhhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999963579999997531 12479999999999999876 999999999999999999999986
Q ss_pred H
Q 011142 471 L 471 (492)
Q Consensus 471 ~ 471 (492)
.
T Consensus 450 ~ 450 (451)
T PLN03004 450 T 450 (451)
T ss_pred C
Confidence 4
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.4e-60 Score=477.88 Aligned_cols=441 Identities=28% Similarity=0.423 Sum_probs=327.0
Q ss_pred CCCCccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC
Q 011142 3 TQANQLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 80 (492)
+++...||+++|+|+.||++|++.||+.|++| ||+|||++++.+...+.+... ..+++|+.++. +++.
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~ 75 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPS 75 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCC
Confidence 35668999999999999999999999999999 999999999987776655321 12588888763 2333
Q ss_pred CCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhc
Q 011142 81 GCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLF 160 (492)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 160 (492)
+.... ......+....+.+...+.+++++...++|+||+|.++.|+..+|+++|||++.++++++..+..+.+.+
T Consensus 76 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 76 ELVRA-----ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred ccccc-----cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 22111 0112222222335666777777763236899999999999999999999999999999987777665553
Q ss_pred cccccccCcCC-----Cc-ccccCCCCCCccccccccCcccc---chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHH
Q 011142 161 TSKVFESVSSE-----SE-YLVVPCLPDKIEFTTQQVDSSLG---SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKE 231 (492)
Q Consensus 161 ~~~~~~~~~~~-----~~-~~~~p~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 231 (492)
........+.. .. ...+|+++. +...+++.++. ......+........+++++++||+.+||+.++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 227 (459)
T PLN02448 151 LLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDA 227 (459)
T ss_pred hhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHH
Confidence 21110000100 01 113555543 45555665442 11122223333445667899999999999999999
Q ss_pred HHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCC
Q 011142 232 YKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRP 311 (492)
Q Consensus 232 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~ 311 (492)
+...++++++.|||+.+....... ... ......+.++.+|++.++++++|||||||....+.+++.+++.+|+..+++
T Consensus 228 l~~~~~~~~~~iGP~~~~~~~~~~-~~~-~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~ 305 (459)
T PLN02448 228 LKSKFPFPVYPIGPSIPYMELKDN-SSS-SNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVR 305 (459)
T ss_pred HHhhcCCceEEecCcccccccCCC-ccc-cccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 987777789999999653211000 000 000012347889999988889999999999888899999999999999999
Q ss_pred eEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCcccc
Q 011142 312 FIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQ 391 (492)
Q Consensus 312 vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ 391 (492)
|||++.... .++.++. +.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||
T Consensus 306 ~lw~~~~~~-----------~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ 373 (459)
T PLN02448 306 FLWVARGEA-----------SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQ 373 (459)
T ss_pred EEEEEcCch-----------hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccc
Confidence 999876431 1222221 3578888999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHHHHHHHhcCCchH
Q 011142 392 FMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG-KEGEERRNRAVKLGQMANMAVQEGGSSH 470 (492)
Q Consensus 392 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 470 (492)
+.||+++++.+|+|+.+.... +....+++++|.++|+++|.++ +++++||+||++|++++++++.+||||+
T Consensus 374 ~~na~~v~~~~g~G~~~~~~~--------~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~ 445 (459)
T PLN02448 374 PLNSKLIVEDWKIGWRVKREV--------GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSD 445 (459)
T ss_pred hhhHHHHHHHhCceEEEeccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999963479998885320 0012479999999999999875 6788999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 011142 471 LNVTLVIQDIMKH 483 (492)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (492)
.++++|++++++.
T Consensus 446 ~~l~~~v~~~~~~ 458 (459)
T PLN02448 446 TNLDAFIRDISQG 458 (459)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999865
No 18
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=8.2e-60 Score=474.25 Aligned_cols=426 Identities=25% Similarity=0.441 Sum_probs=319.1
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
.++.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+.... ..+++++.++. +++.+.
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~~-- 72 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDDP-- 72 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCCc--
Confidence 3457999999999999999999999999999999999999876655443211 12588887763 222211
Q ss_pred cccccccchHHHHHHHHh-hhhHHHHHHHHhcC--CCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcc
Q 011142 85 LDMVASLGLAFDFFTAAD-MLQEPVENFFAQLK--PRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFT 161 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~--~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (492)
.. .. ..+...+. .+.+.+.+++++.. .++++||+|.+..|+..+|+++|||++.++++++..+..+.+.+.
T Consensus 73 ----~~-~~-~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~ 146 (448)
T PLN02562 73 ----PR-DF-FSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPE 146 (448)
T ss_pred ----cc-cH-HHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHH
Confidence 11 22 23334444 56777777777631 134899999999999999999999999999999887777655542
Q ss_pred cccc---ccCc--CCCccc-ccCCCCCCccccccccCcccc-----chhHHHHHHhhhccCCccEEEEcChhhhcHHHHH
Q 011142 162 SKVF---ESVS--SESEYL-VVPCLPDKIEFTTQQVDSSLG-----SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIK 230 (492)
Q Consensus 162 ~~~~---~~~~--~~~~~~-~~p~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 230 (492)
.... ...+ ....+. .+|+++. +...+++..++ ......+.+..+...+++++++|||.+||+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 223 (448)
T PLN02562 147 LVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVK 223 (448)
T ss_pred HhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHH
Confidence 1111 1111 111122 4677654 45566665442 1112333344456677889999999999998888
Q ss_pred HHHh----hcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCc-CCCHHhHHHHHHHH
Q 011142 231 EYKK----IRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLC-NLIPSQMRELGLGL 305 (492)
Q Consensus 231 ~~~~----~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~-~~~~~~~~~~~~a~ 305 (492)
.... ...++++.|||++....... ........+.++.+||++++++++|||||||.. ..+.+++.+++.++
T Consensus 224 ~~~~~~~~~~~~~v~~iGpl~~~~~~~~----~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l 299 (448)
T PLN02562 224 NHQASYNNGQNPQILQIGPLHNQEATTI----TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALAL 299 (448)
T ss_pred HHHhhhccccCCCEEEecCccccccccc----CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHH
Confidence 6653 23478999999976532100 000001123557799999988899999999986 57899999999999
Q ss_pred HhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeecc
Q 011142 306 EASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTW 385 (492)
Q Consensus 306 ~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~ 385 (492)
+.++++|||+++..... . +|++|.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 300 ~~~g~~fiW~~~~~~~~----~--l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~ 372 (448)
T PLN02562 300 EASGRPFIWVLNPVWRE----G--LPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCY 372 (448)
T ss_pred HHCCCCEEEEEcCCchh----h--CCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeC
Confidence 99999999999653211 1 777877765 4688888999999999999999999999999999999999999999
Q ss_pred CCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhc
Q 011142 386 PLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQE 465 (492)
Q Consensus 386 P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (492)
|+++||+.||+++++..|+|+.+. .++.++|.++|+++|.|+ +||+||++++++++++ ++
T Consensus 373 P~~~DQ~~na~~~~~~~g~g~~~~---------------~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-~~ 432 (448)
T PLN02562 373 PVAGDQFVNCAYIVDVWKIGVRIS---------------GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-EA 432 (448)
T ss_pred CcccchHHHHHHHHHHhCceeEeC---------------CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-CC
Confidence 999999999999963468887773 278999999999999876 9999999999999988 77
Q ss_pred CCchHHHHHHHHHHHH
Q 011142 466 GGSSHLNVTLVIQDIM 481 (492)
Q Consensus 466 gg~~~~~~~~~~~~~~ 481 (492)
||||+.++++|++++.
T Consensus 433 gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 433 RLRSMMNFTTLKDELK 448 (448)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 8999999999999863
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.4e-59 Score=476.22 Aligned_cols=450 Identities=25% Similarity=0.418 Sum_probs=323.3
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhh---hhHHHhhhh-cCCceEEEEecCCccccCCCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRG--VIITIVTTPVNAARF---NGILARAIE-SGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~v---~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~ 80 (492)
++||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ ......... ...+++++.++++.. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 57999999999999999999999999998 889999998764422 111111100 122588888874421 11
Q ss_pred CCCccccccccchHHHHHHHHhhhhHHHHHHHHhc---CCCC-cEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHH
Q 011142 81 GCENLDMVASLGLAFDFFTAADMLQEPVENFFAQL---KPRP-NCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCY 156 (492)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 156 (492)
. . .......+........+.+.+++.+. ..+| ++||+|.++.|+..+|+.+|||++.|++++++.+..+
T Consensus 78 ~--~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 78 T--E-----DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c--c-----chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 0 0 00111122222234445555555331 1234 8999999999999999999999999999999999888
Q ss_pred hhhcccccc---c--cCcCCCcccccCCCCCCccccccccCcccc-chhHHHHHHhhhccCCccEEEEcChhhhcHHHHH
Q 011142 157 NNLFTSKVF---E--SVSSESEYLVVPCLPDKIEFTTQQVDSSLG-SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIK 230 (492)
Q Consensus 157 ~~~~~~~~~---~--~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 230 (492)
.+.+..... . ..+....+..+|+++.. +...+++..+. ..+...+....+...+++++++||+.+||+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 776542211 1 11111123457776321 44456665443 2222333344456677899999999999998888
Q ss_pred HHHhh--cCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC
Q 011142 231 EYKKI--RHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS 308 (492)
Q Consensus 231 ~~~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~ 308 (492)
.+... ..++++.|||++........ .....+.++.+|+++++++++|||||||....+.+++.+++.+++.+
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~~------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~ 302 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGDD------SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERS 302 (481)
T ss_pred HHHhcccCCCCEEEeCCCccccccccc------cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHc
Confidence 77652 23689999999432211000 00114568999999988888999999999889999999999999999
Q ss_pred CCCeEEEEeCCCc---------chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcC
Q 011142 309 NRPFIWVIREGET---------SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAG 379 (492)
Q Consensus 309 ~~~vv~~~~~~~~---------~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~G 379 (492)
+++|||+++.... ..+..++ +|++|.++.. .|+++++|+||.+||+|+++++|||||||||++||+++|
T Consensus 303 ~~~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~G 380 (481)
T PLN02554 303 GHRFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRTK-DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFG 380 (481)
T ss_pred CCCeEEEEcCCcccccccccccccchhhh-CChHHHHHhc-cCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcC
Confidence 9999999975210 0111122 6888877764 566778999999999999999999999999999999999
Q ss_pred CCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHH
Q 011142 380 LPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMD-EGKEGEERRNRAVKLGQM 458 (492)
Q Consensus 380 vP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~a~~l~~~ 458 (492)
||||++|+++||+.||+++++++|+|+.+.... ..++ ..+.+..++.++|.++|+++|. |+ +||+||++++++
T Consensus 381 VP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~-~~~~-~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a~~l~~~ 454 (481)
T PLN02554 381 VPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYW-RGDL-LAGEMETVTAEEIERGIRCLMEQDS----DVRKRVKEMSEK 454 (481)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEeeccc-cccc-cccccCeEcHHHHHHHHHHHhcCCH----HHHHHHHHHHHH
Confidence 999999999999999955336999999986410 0000 0001135899999999999996 43 999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhc
Q 011142 459 ANMAVQEGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 459 ~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (492)
+++++++|||++.++++||+++..+
T Consensus 455 ~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 455 CHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999864
No 20
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.5e-59 Score=465.34 Aligned_cols=434 Identities=26% Similarity=0.454 Sum_probs=317.7
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
.+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+.. +...... ....+++++.++ ++++.+...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~ 73 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVIS 73 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCcccc
Confidence 3569999999999999999999999996 699999999985311 1111110 011248888775 256654321
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcC---CCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLK---PRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFT 161 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (492)
.. ......+......+.+.+.+++++.. .++++||+|.+.+|+..+|+.+|||.+.+++++++.+..+.+...
T Consensus 74 ~~----~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 74 NT----DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred cc----ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 10 12223344444456667777776521 235999999999999999999999999999999999887765532
Q ss_pred ccccccCcCCCcccccCCCCCCccccccccCccccc-----hhHHHHHHhhhccC--CccEEEEcChhhhcHHHHHHHHh
Q 011142 162 SKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGS-----RFNVFQKKMGAADT--GTYGVIVNSFEELEPAYIKEYKK 234 (492)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~ 234 (492)
.. .....+|+++. +...+++.+++. .+...+.+..+... .++++++|||.+||+.+++.+..
T Consensus 150 ~~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 150 GN--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred cC--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 10 12334677654 455667665521 11223333333222 24689999999999999988854
Q ss_pred hcCCcEEEeccCCCCCcccchhhhcCCCC--CcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCe
Q 011142 235 IRHDKVWCIGPVSLSNKEYSDKAQRGNKA--SVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPF 312 (492)
Q Consensus 235 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~v 312 (492)
..++.|||+.+........ .+... ...+.++.+||+++++++||||||||...++.+++.+++.+|+.++++|
T Consensus 219 ---~~v~~VGPL~~~~~~~~~~--~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 293 (455)
T PLN02152 219 ---IEMVAVGPLLPAEIFTGSE--SGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPF 293 (455)
T ss_pred ---CCEEEEcccCccccccccc--cCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCe
Confidence 2699999997532100000 00000 0123579999999988899999999999999999999999999999999
Q ss_pred EEEEeCCCcc------hhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccC
Q 011142 313 IWVIREGETS------KELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWP 386 (492)
Q Consensus 313 v~~~~~~~~~------~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P 386 (492)
||+++..... +......+|++|.++. .+|.++.+|+||.+||+|+++++|||||||||++|++++|||||++|
T Consensus 294 lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P 372 (455)
T PLN02152 294 LWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFP 372 (455)
T ss_pred EEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecc
Confidence 9999753210 0000000467777665 45667789999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcC
Q 011142 387 LFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEG 466 (492)
Q Consensus 387 ~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~g 466 (492)
+++||+.||+++++.+|+|+.+..++ ++.++.++|.++|+++|+|+ ++.||+||++|++++++++.+|
T Consensus 373 ~~~DQ~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~~~g 440 (455)
T PLN02152 373 MWSDQPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAGGEG 440 (455)
T ss_pred ccccchHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999974457776664321 12479999999999999754 4579999999999999999999
Q ss_pred CchHHHHHHHHHHH
Q 011142 467 GSSHLNVTLVIQDI 480 (492)
Q Consensus 467 g~~~~~~~~~~~~~ 480 (492)
|||+.++++||+++
T Consensus 441 gsS~~nl~~li~~i 454 (455)
T PLN02152 441 GSSDKNVEAFVKTL 454 (455)
T ss_pred CcHHHHHHHHHHHh
Confidence 99999999999986
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-58 Score=469.89 Aligned_cols=450 Identities=27% Similarity=0.465 Sum_probs=316.0
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCC---eEEEEeCCcchh-hhhhHHHhhhhcCCceEEEEecCCccccCCCCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGV---IITIVTTPVNAA-RFNGILARAIESGLQIKIVQFQLPCEEAGLPEG 81 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH---~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 81 (492)
++.||+++|+|++||++|++.||+.|+.+|. .||+++++.... ..+..+........+|+++.+|++.. +.+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~~ 77 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PPP 77 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Ccc
Confidence 4679999999999999999999999999984 567766543221 11111111111112589998875421 211
Q ss_pred CCccccccccchHHHHHHHHhhhh----HHHHHHHHhcC---C-CCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHH
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQ----EPVENFFAQLK---P-RPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCL 153 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~ll~~~~---~-~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 153 (492)
..... . .....+......+. +.+.+++.+.. . ++++||+|.+++|+..+|+++|||.+.+++++++.+
T Consensus 78 ~~~~~--~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 78 MELFV--K--ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred ccccc--c--chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHH
Confidence 11000 0 01112222222333 33444332210 1 359999999999999999999999999999999888
Q ss_pred HHHhhhcccc-ccc-cC--cCCCcccccCCCCCCccccccccCcccc-chhHHHHHHhhhccCCccEEEEcChhhhcHHH
Q 011142 154 VCYNNLFTSK-VFE-SV--SSESEYLVVPCLPDKIEFTTQQVDSSLG-SRFNVFQKKMGAADTGTYGVIVNSFEELEPAY 228 (492)
Q Consensus 154 ~~~~~~~~~~-~~~-~~--~~~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 228 (492)
..+.+.+... ... .. .....+..+|+++.. +...+++..++ ......+....+...+++++++|||.+||+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 8776654211 111 00 011123456777422 34455554332 11112222333456778999999999999999
Q ss_pred HHHHHhhc--CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH
Q 011142 229 IKEYKKIR--HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLE 306 (492)
Q Consensus 229 ~~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~ 306 (492)
++.+.... -++++.|||+++....... . -.+..+.++.+||+.++++++|||||||....+.+++.+++.+++
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~~~----~-~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~ 306 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRTSP----N-LDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALE 306 (475)
T ss_pred HHHHHhhcccCCeeEEeccccccccccCC----C-CCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 99886541 1689999999764321000 0 001123679999999888899999999998899999999999999
Q ss_pred hCCCCeEEEEeCCCc--chhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeec
Q 011142 307 ASNRPFIWVIREGET--SKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLT 384 (492)
Q Consensus 307 ~~~~~vv~~~~~~~~--~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~ 384 (492)
.++++|||+++.... ...... +|++|.+++... .++++|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 307 ~~~~~flw~~~~~~~~~~~~~~~--lp~~~~er~~~r-g~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~ 383 (475)
T PLN02167 307 LVGCRFLWSIRTNPAEYASPYEP--LPEGFMDRVMGR-GLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIAT 383 (475)
T ss_pred hCCCcEEEEEecCcccccchhhh--CChHHHHHhccC-eeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEe
Confidence 999999999975321 111122 788888777544 466699999999999999999999999999999999999999
Q ss_pred cCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHh
Q 011142 385 WPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQ 464 (492)
Q Consensus 385 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~ 464 (492)
+|+++||+.||+++++.+|+|+.+.... ++ .++..+++++|.++|+++|.++ +.||+||++++++++++++
T Consensus 384 ~P~~~DQ~~na~~~~~~~g~g~~~~~~~---~~---~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~ 454 (475)
T PLN02167 384 WPMYAEQQLNAFTMVKELGLAVELRLDY---VS---AYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVM 454 (475)
T ss_pred ccccccchhhHHHHHHHhCeeEEeeccc---cc---ccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHh
Confidence 9999999999987436999999986420 00 0012479999999999999754 3899999999999999999
Q ss_pred cCCchHHHHHHHHHHHHh
Q 011142 465 EGGSSHLNVTLVIQDIMK 482 (492)
Q Consensus 465 ~gg~~~~~~~~~~~~~~~ 482 (492)
+||||+.++++||+++.+
T Consensus 455 ~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 455 DGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999999999999999876
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.8e-50 Score=409.84 Aligned_cols=407 Identities=16% Similarity=0.212 Sum_probs=286.0
Q ss_pred CccEEEEe-cCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccc-cCCCCCCC
Q 011142 6 NQLHFVLF-PFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEE-AGLPEGCE 83 (492)
Q Consensus 6 ~~~~il~~-~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~~~~~ 83 (492)
+..||+.+ |.++.||+..+.+|+++|++|||+||++++..... .... ...+++.+.++..... ...-....
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhh
Confidence 35688765 88899999999999999999999999998753110 0000 0124554444321111 00000000
Q ss_pred ccc---cc----cc-cchHHHHHHHHh--hhhHHHHHHHH--hcCCCCcEEEEcCCCccHHHHHHHc-CCCeEEEecchH
Q 011142 84 NLD---MV----AS-LGLAFDFFTAAD--MLQEPVENFFA--QLKPRPNCIISDMCLPYTAHIAGKF-NIPRITFHGTCC 150 (492)
Q Consensus 84 ~~~---~~----~~-~~~~~~~~~~~~--~~~~~l~~ll~--~~~~~pDlvI~D~~~~~~~~~A~~l-giP~v~~~~~~~ 150 (492)
... .. .. ......+...|+ ...+.+.++++ + .+||+||+|.+..|++.+|+.+ ++|.|.+++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC--CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 000 00 00 011122233333 33567788887 5 7899999998888999999999 999888877554
Q ss_pred HHHHHHhhhccccccccCc-CCCcccccCCCCC----CccccccccCccc---------c---chhHHHHHHh-------
Q 011142 151 FCLVCYNNLFTSKVFESVS-SESEYLVVPCLPD----KIEFTTQQVDSSL---------G---SRFNVFQKKM------- 206 (492)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~----~~~~~~~~l~~~~---------~---~~~~~~~~~~------- 206 (492)
..... ...+ .|..+.++|.... .+....| +..++ + ...+++.++.
T Consensus 170 ~~~~~----------~~~gg~p~~~syvP~~~~~~~~~Msf~~R-~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~ 238 (507)
T PHA03392 170 LAENF----------ETMGAVSRHPVYYPNLWRSKFGNLNVWET-INEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPT 238 (507)
T ss_pred chhHH----------HhhccCCCCCeeeCCcccCCCCCCCHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCC
Confidence 33211 1122 4556666664332 2222111 11111 0 1112222222
Q ss_pred -hhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEE
Q 011142 207 -GAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYA 285 (492)
Q Consensus 207 -~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyv 285 (492)
.+..++.+.+++|+.+.++ +++++++++++|||++.+.... ..+++++.+|++.. ++++|||
T Consensus 239 ~~~l~~~~~l~lvns~~~~d------~~rp~~p~v~~vGgi~~~~~~~----------~~l~~~l~~fl~~~-~~g~V~v 301 (507)
T PHA03392 239 IRELRNRVQLLFVNVHPVFD------NNRPVPPSVQYLGGLHLHKKPP----------QPLDDYLEEFLNNS-TNGVVYV 301 (507)
T ss_pred HHHHHhCCcEEEEecCcccc------CCCCCCCCeeeecccccCCCCC----------CCCCHHHHHHHhcC-CCcEEEE
Confidence 2334566789999988888 4568899999999997643111 12578999999876 4579999
Q ss_pred eeCCCcC---CCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccc
Q 011142 286 CLGSLCN---LIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGG 362 (492)
Q Consensus 286 s~Gs~~~---~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 362 (492)
||||... .+.+.+..+++|+++++++|||++++.... .. + ++|+++.+|+||.+||+|+.+++
T Consensus 302 S~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~---~~--~---------p~Nv~i~~w~Pq~~lL~hp~v~~ 367 (507)
T PHA03392 302 SFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA---IN--L---------PANVLTQKWFPQRAVLKHKNVKA 367 (507)
T ss_pred ECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc---cc--C---------CCceEEecCCCHHHHhcCCCCCE
Confidence 9999864 578889999999999999999999764321 01 2 56999999999999999999999
Q ss_pred cccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 363 FLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 363 ~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
||||||+||++||+++|||||++|+++||+.||+|+ +++|+|+.++.. .++.++|.++|+++|+|+
T Consensus 368 fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-------------~~t~~~l~~ai~~vl~~~ 433 (507)
T PHA03392 368 FVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-------------TVSAAQLVLAIVDVIENP 433 (507)
T ss_pred EEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-------------CcCHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999 599999999886 489999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcc
Q 011142 443 KEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKHV 484 (492)
Q Consensus 443 ~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 484 (492)
+|++||+++++.+++. .-+..+.+..-++++.++.
T Consensus 434 ----~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 434 ----KYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred ----HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCC
Confidence 9999999999999954 4344566667778887766
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.8e-51 Score=422.97 Aligned_cols=401 Identities=22% Similarity=0.324 Sum_probs=228.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc-
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM- 87 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~- 87 (492)
||+++|. +.||+.++..|+++|++|||+||++++..... +... ....+++..++.+...............
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888884 78999999999999999999999998743211 1111 1124556555543322122222111000
Q ss_pred -cccc---chHHHHHH-----------HHh--hhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchH
Q 011142 88 -VASL---GLAFDFFT-----------AAD--MLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCC 150 (492)
Q Consensus 88 -~~~~---~~~~~~~~-----------~~~--~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 150 (492)
.... ........ .|+ ...+.+.+.+++ .++|++|+|.+..|+..+|+.+|+|.+.+.++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 0000 00111111 111 012344456666 6899999999988999999999999987543322
Q ss_pred HHHHHHhhhcccccccc-CcCCCcccccCCCCC----CccccccccCccccchh-HHHHHHh------------------
Q 011142 151 FCLVCYNNLFTSKVFES-VSSESEYLVVPCLPD----KIEFTTQQVDSSLGSRF-NVFQKKM------------------ 206 (492)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~----~~~~~~~~l~~~~~~~~-~~~~~~~------------------ 206 (492)
.. ..... .+.+..+.++|.... .+... .++...+...+ ...+...
T Consensus 152 ~~----------~~~~~~~g~p~~psyvP~~~s~~~~~msf~-~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (500)
T PF00201_consen 152 MY----------DLSSFSGGVPSPPSYVPSMFSDFSDRMSFW-QRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSF 220 (500)
T ss_dssp CS----------CCTCCTSCCCTSTTSTTCBCCCSGTTSSSS-T--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGC
T ss_pred cc----------hhhhhccCCCCChHHhccccccCCCccchh-hhhhhhhhhhhhccccccchhhHHHHHhhhccccccc
Confidence 11 11111 134455556654322 22111 11111111000 0011111
Q ss_pred hhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEe
Q 011142 207 GAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYAC 286 (492)
Q Consensus 207 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs 286 (492)
.+...+.+.+++|+.+.++ ++ ++++|++++||+++.+.++. +++++..|++...++++||||
T Consensus 221 ~~~~~~~~l~l~ns~~~ld-----~p-rp~~p~v~~vGgl~~~~~~~------------l~~~~~~~~~~~~~~~vv~vs 282 (500)
T PF00201_consen 221 RELLSNASLVLINSHPSLD-----FP-RPLLPNVVEVGGLHIKPAKP------------LPEELWNFLDSSGKKGVVYVS 282 (500)
T ss_dssp HHHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----T------------CHHHHHHHTSTTTTTEEEEEE
T ss_pred HHHHHHHHHHhhhccccCc-----CC-cchhhcccccCccccccccc------------cccccchhhhccCCCCEEEEe
Confidence 1111223344556655554 34 34558999999997765432 678999999985578899999
Q ss_pred eCCCcC-CCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCcccccc
Q 011142 287 LGSLCN-LIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLT 365 (492)
Q Consensus 287 ~Gs~~~-~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~It 365 (492)
|||... .+.+.+..+++++++++++|||++++.... . + ++|+++.+|+||.+||+|+++++|||
T Consensus 283 fGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~----~--l---------~~n~~~~~W~PQ~~lL~hp~v~~fit 347 (500)
T PF00201_consen 283 FGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPE----N--L---------PKNVLIVKWLPQNDLLAHPRVKLFIT 347 (500)
T ss_dssp -TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGC----H--H---------HTTEEEESS--HHHHHTSTTEEEEEE
T ss_pred cCcccchhHHHHHHHHHHHHhhCCCcccccccccccc----c--c---------cceEEEeccccchhhhhcccceeeee
Confidence 999986 445558889999999999999999773210 1 2 45999999999999999999999999
Q ss_pred ccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhh
Q 011142 366 HCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEG 445 (492)
Q Consensus 366 HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~ 445 (492)
|||+||++||+++|||||++|+++||+.||+|+ ++.|+|+.++.. .+|.++|.++|+++|+|+
T Consensus 348 HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-------------~~~~~~l~~ai~~vl~~~--- 410 (500)
T PF00201_consen 348 HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-------------DLTEEELRAAIREVLENP--- 410 (500)
T ss_dssp S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-------------C-SHHHHHHHHHHHHHSH---
T ss_pred ccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-------------CCcHHHHHHHHHHHHhhh---
Confidence 999999999999999999999999999999999 599999999987 499999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcc
Q 011142 446 EERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKHV 484 (492)
Q Consensus 446 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 484 (492)
+|++||+++++++++. --+..+.+..-+|++.++.
T Consensus 411 -~y~~~a~~ls~~~~~~---p~~p~~~~~~~ie~v~~~~ 445 (500)
T PF00201_consen 411 -SYKENAKRLSSLFRDR---PISPLERAVWWIEYVARHG 445 (500)
T ss_dssp -HHHHHHHHHHHTTT------------------------
T ss_pred -HHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999854 2333445555566665543
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.3e-43 Score=352.82 Aligned_cols=381 Identities=20% Similarity=0.264 Sum_probs=256.0
Q ss_pred ecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccc
Q 011142 13 FPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLG 92 (492)
Q Consensus 13 ~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 92 (492)
+.+|+.||++|++.||++|++|||+|+|++++.+.+.+++. ++.+..++.........+.. .......
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~---~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPEN---TEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccc---cCcchHH
Confidence 35789999999999999999999999999999988877664 68887776432111111110 0001112
Q ss_pred hHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccccCcCCC
Q 011142 93 LAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFESVSSES 172 (492)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (492)
....+..........+.+++++ .+||+||+|.+++++..+|+.+|||+|.+++...... ..+. ..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~---------~~ 133 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEE---------MV 133 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccc---------cc
Confidence 2222333333344556667777 7999999999888999999999999998865432110 0000 00
Q ss_pred cccccCCCCCCccccccccCccccchhHHHHHHhh-------h-ccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEec
Q 011142 173 EYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMG-------A-ADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIG 244 (492)
Q Consensus 173 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG 244 (492)
.+ ..+.+........+.. ..+...++..+.++. . .....+..+..+ ++++.+.+..|+++++++|
T Consensus 134 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~~~~~~~~~~G 206 (392)
T TIGR01426 134 SP-AGEGSAEEGAIAERGL-AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGETFDDSFTFVG 206 (392)
T ss_pred cc-cchhhhhhhccccchh-HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCccccCCCeEEEC
Confidence 00 0000000000000000 000011122211111 0 011112233333 3344444567889999999
Q ss_pred cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchh
Q 011142 245 PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKE 324 (492)
Q Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~ 324 (492)
|+...+. +...|.....++++||||+||......+.+..+++++.+.+.++||..+.......
T Consensus 207 p~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~ 269 (392)
T TIGR01426 207 PCIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPAD 269 (392)
T ss_pred CCCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhH
Confidence 9865321 12246665567889999999987766678888999999999999999876543222
Q ss_pred hhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhcc
Q 011142 325 LKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKI 404 (492)
Q Consensus 325 ~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~ 404 (492)
... .+.|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||..||+++ +++|+
T Consensus 270 ~~~-----------~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~~~g~ 335 (392)
T TIGR01426 270 LGE-----------LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-AELGL 335 (392)
T ss_pred hcc-----------CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-HHCCC
Confidence 111 2569999999999999999998 999999999999999999999999999999999999 59999
Q ss_pred ceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011142 405 GVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 405 G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (492)
|..+... .+++++|.++|.++|+|+ +|+++++++++.+++. +|. ..+.++|+.+
T Consensus 336 g~~l~~~-------------~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~~---~~~--~~aa~~i~~~ 389 (392)
T TIGR01426 336 GRHLPPE-------------EVTAEKLREAVLAVLSDP----RYAERLRKMRAEIREA---GGA--RRAADEIEGF 389 (392)
T ss_pred EEEeccc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHc---CCH--HHHHHHHHHh
Confidence 9998775 489999999999999988 8999999999999854 553 4455555554
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.5e-42 Score=347.74 Aligned_cols=384 Identities=15% Similarity=0.111 Sum_probs=250.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc---
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN--- 84 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~--- 84 (492)
|||+|++.|+.||++|+++||++|++|||+|+|++++.++..+++. ++.|..++..............
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 6999999999999999999999999999999999999877666542 6888877543211000000000
Q ss_pred -cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcccc
Q 011142 85 -LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSK 163 (492)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 163 (492)
............+......+...+.+.+++ .+||+||+|.+.+++..+|+.+|||++.+++++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc--------
Confidence 000000112222333334555556666666 899999999988888999999999999988765332110
Q ss_pred ccccCcCCCcccccCCCCCCccccccccC--ccc---cchhHHHHHHhhhcc-----CCccEEEEcChhhhcHHHHHHHH
Q 011142 164 VFESVSSESEYLVVPCLPDKIEFTTQQVD--SSL---GSRFNVFQKKMGAAD-----TGTYGVIVNSFEELEPAYIKEYK 233 (492)
Q Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~--~~~---~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~~~~~~~ 233 (492)
..+.. +.... .....+. ... ...+......+.-.. ...+..+... ++.+..++
T Consensus 142 --------~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 204 (401)
T cd03784 142 --------FPPPL--GRANL--RLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAVLPPP 204 (401)
T ss_pred --------CCCcc--chHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----CcccCCCC
Confidence 00000 00000 0000000 000 000111111111000 0011111111 12222345
Q ss_pred hhcCCcEEEec-cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCC-HHhHHHHHHHHHhCCCC
Q 011142 234 KIRHDKVWCIG-PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLI-PSQMRELGLGLEASNRP 311 (492)
Q Consensus 234 ~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~-~~~~~~~~~a~~~~~~~ 311 (492)
+.|+++..++| ++...+.. ...+.++..|++. ++++|||++||..... ...+..+++++...+.+
T Consensus 205 ~~~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~ 271 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVPYN-----------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQR 271 (401)
T ss_pred CCccccCcEeCCCCCCCCCC-----------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCe
Confidence 66777777776 43322111 1135677788865 5679999999998744 45677799999999999
Q ss_pred eEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCcccc
Q 011142 312 FIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQ 391 (492)
Q Consensus 312 vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ 391 (492)
+||.++...... ...++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|...||
T Consensus 272 ~i~~~g~~~~~~-------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ 336 (401)
T cd03784 272 AILSLGWGGLGA-------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQ 336 (401)
T ss_pred EEEEccCccccc-------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCc
Confidence 999987654311 012569999999999999999999 99999999999999999999999999999
Q ss_pred chhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHH
Q 011142 392 FMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHL 471 (492)
Q Consensus 392 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 471 (492)
+.||+|+ +++|+|+.++.. .+++++|.++|++++++ .+++++.++++.+++. +| ..
T Consensus 337 ~~~a~~~-~~~G~g~~l~~~-------------~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~~~---~g--~~ 392 (401)
T cd03784 337 PFWAARV-AELGAGPALDPR-------------ELTAERLAAALRRLLDP-----PSRRRAAALLRRIREE---DG--VP 392 (401)
T ss_pred HHHHHHH-HHCCCCCCCCcc-------------cCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHhc---cC--HH
Confidence 9999999 599999999876 48999999999999985 5566677777666532 44 34
Q ss_pred HHHHHHHH
Q 011142 472 NVTLVIQD 479 (492)
Q Consensus 472 ~~~~~~~~ 479 (492)
.+.++|+.
T Consensus 393 ~~~~~ie~ 400 (401)
T cd03784 393 SAADVIER 400 (401)
T ss_pred HHHHHHhh
Confidence 55566553
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-41 Score=337.58 Aligned_cols=395 Identities=17% Similarity=0.219 Sum_probs=254.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
+|||+++..|..||++|+++|+++|.++||+|+|++++.+.+.+.+. ++.|..++.... ........
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~----~~~~~~~~ 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDS----ELATEDGK 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCC----hhhhhhhh
Confidence 58999999999999999999999999999999999999988887765 555555443200 01111000
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccc
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFE 166 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
.... ..+.............+.+++.+ ..||+++.|.....+ .+++..++|++............... ...
T Consensus 68 ~~~~-~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 138 (406)
T COG1819 68 FAGV-KSFRRLLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL-----PLP 138 (406)
T ss_pred hhcc-chhHHHhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-----Ccc
Confidence 0001 11111233334555566677777 799999999776655 89999999999754443322111000 000
Q ss_pred cCcCCCcccccCC--CCCCccccccccCccccchhHHHHHHhhhcc---CCccEEEEcChhhhcHHHHHHH--H-hhcCC
Q 011142 167 SVSSESEYLVVPC--LPDKIEFTTQQVDSSLGSRFNVFQKKMGAAD---TGTYGVIVNSFEELEPAYIKEY--K-KIRHD 238 (492)
Q Consensus 167 ~~~~~~~~~~~p~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~l~~~~~~~~--~-~~~~~ 238 (492)
..... .....+. ++.. ........ +........+..... .....-+..+-+.++..+.+.. + ..+|.
T Consensus 139 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (406)
T COG1819 139 PVGIA-GKLPIPLYPLPPR--LVRPLIFA--RSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPF 213 (406)
T ss_pred ccccc-ccccccccccChh--hccccccc--hhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCC
Confidence 00000 0000000 0000 00000000 000000000000000 0000000011111111111100 0 22344
Q ss_pred cEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeC
Q 011142 239 KVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIRE 318 (492)
Q Consensus 239 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~ 318 (492)
...++||+... ...++..|.. .++++||+|+||.... .+.+..++++++.++.+||...+.
T Consensus 214 ~~~~~~~~~~~----------------~~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~ 274 (406)
T COG1819 214 IGPYIGPLLGE----------------AANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG 274 (406)
T ss_pred CcCcccccccc----------------ccccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc
Confidence 55566666433 2334444432 3678999999999977 888999999999999999999876
Q ss_pred CCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHH
Q 011142 319 GETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLV 398 (492)
Q Consensus 319 ~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv 398 (492)
... .... + +.|+++..|+||.++|+++++ ||||||+||++|||++|||+|++|...||++||.|+
T Consensus 275 -~~~-~~~~--~---------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv 339 (406)
T COG1819 275 -ARD-TLVN--V---------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV 339 (406)
T ss_pred -ccc-cccc--C---------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH
Confidence 221 1111 3 569999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 011142 399 VQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQ 478 (492)
Q Consensus 399 ~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 478 (492)
|++|+|..+..+ .++++.|+++|+++|+|+ .|+++++++++.+++. +| ...++++|+
T Consensus 340 -e~~G~G~~l~~~-------------~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~~---~g--~~~~a~~le 396 (406)
T COG1819 340 -EELGAGIALPFE-------------ELTEERLRAAVNEVLADD----SYRRAAERLAEEFKEE---DG--PAKAADLLE 396 (406)
T ss_pred -HHcCCceecCcc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhhc---cc--HHHHHHHHH
Confidence 699999999987 499999999999999998 9999999999999966 66 667888888
Q ss_pred HHHhccc
Q 011142 479 DIMKHVH 485 (492)
Q Consensus 479 ~~~~~~~ 485 (492)
++.+...
T Consensus 397 ~~~~~~~ 403 (406)
T COG1819 397 EFAREKK 403 (406)
T ss_pred HHHhccc
Confidence 8766543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2e-39 Score=336.63 Aligned_cols=398 Identities=28% Similarity=0.441 Sum_probs=244.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEE---EEecCCccccCCCCCCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKI---VQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~---~~~~~~~~~~~l~~~~~ 83 (492)
..+++++++|+.||++|+..||+.|+++||+||++++........... ....+.. ...+.....++++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSS-----KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcc-----cceeeeeeecChHHhhhhhhhhccchH
Confidence 457888888999999999999999999999999999876444322100 0001111 11111111112222221
Q ss_pred ccccccccchHHHHHHHHhhhhHH-HHHHHHhcCCCCcEEEEcCCCccHHHHHHHcC-CCeEEEecchHHHHHHHhhhcc
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEP-VENFFAQLKPRPNCIISDMCLPYTAHIAGKFN-IPRITFHGTCCFCLVCYNNLFT 161 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~ 161 (492)
... .........+...+...... ..........++|++|+|.+..+...+|...+ ++...+.+............+
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~- 157 (496)
T KOG1192|consen 80 DDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP- 157 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc-
Confidence 110 00001122233333322222 22222221134999999998666676776664 888887777766644322111
Q ss_pred ccccccCcCCCcccccCCCCC-----------Ccc-ccccccCcccc-----chhHHHHHHhhhc----cCCccEEEEcC
Q 011142 162 SKVFESVSSESEYLVVPCLPD-----------KIE-FTTQQVDSSLG-----SRFNVFQKKMGAA----DTGTYGVIVNS 220 (492)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~~~~-----------~~~-~~~~~l~~~~~-----~~~~~~~~~~~~~----~~~~~~~l~~~ 220 (492)
..++|.... +.. +....++.... ............. ......++.++
T Consensus 158 ------------~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (496)
T KOG1192|consen 158 ------------LSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA 225 (496)
T ss_pred ------------ccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC
Confidence 112222211 000 00011111000 0001111111110 01111222233
Q ss_pred -hhhhcHHHHHHH-HhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCC--eEEEEeeCCCc---CC
Q 011142 221 -FEELEPAYIKEY-KKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPK--SVVYACLGSLC---NL 293 (492)
Q Consensus 221 -~~~l~~~~~~~~-~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~Vyvs~Gs~~---~~ 293 (492)
+..+++..+..+ .....+++++|||+....... ......+|++..+.. ++|||||||.. .+
T Consensus 226 ~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 226 SFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred eEEEEccCcccCCCCCCCCCCceEECcEEecCccc------------cccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 333333333234 344569999999998763221 011344565554443 79999999999 69
Q ss_pred CHHhHHHHHHHHHhC-CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhc-ccCCCccccccccCchh
Q 011142 294 IPSQMRELGLGLEAS-NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLI-LSHPSIGGFLTHCGWNS 371 (492)
Q Consensus 294 ~~~~~~~~~~a~~~~-~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~l-L~~~~~~~~ItHgG~~s 371 (492)
+.+....++.+++.+ ++.|+|++....... +++++.++ ..+||...+|+||.++ |.|+++++||||||+||
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~------~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nS 366 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSIY------FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNS 366 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcchh------hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccH
Confidence 999999999999999 888999998754211 12222111 2468999899999998 69999999999999999
Q ss_pred hHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHH
Q 011142 372 TIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNR 451 (492)
Q Consensus 372 ~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~ 451 (492)
++|++++|||||++|+++||+.||++++ +.|.|..+... .++.+.+..++.+++.++ +|+++
T Consensus 367 t~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~-------------~~~~~~~~~~~~~il~~~----~y~~~ 428 (496)
T KOG1192|consen 367 TLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR-------------DLVSEELLEAIKEILENE----EYKEA 428 (496)
T ss_pred HHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEEehh-------------hcCcHHHHHHHHHHHcCh----HHHHH
Confidence 9999999999999999999999999995 89888888776 366666999999999988 99999
Q ss_pred HHHHHHHHH
Q 011142 452 AVKLGQMAN 460 (492)
Q Consensus 452 a~~l~~~~~ 460 (492)
++++++..+
T Consensus 429 ~~~l~~~~~ 437 (496)
T KOG1192|consen 429 AKRLSEILR 437 (496)
T ss_pred HHHHHHHHH
Confidence 999999877
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=5.2e-26 Score=223.54 Aligned_cols=315 Identities=18% Similarity=0.153 Sum_probs=198.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
|.||++...++.||++|.++||++|.++||+|+|+++....+. +.+ ...++.++.++.. ++... .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~-----~~~g~~~~~~~~~----~l~~~----~ 65 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TII-----EKENIPYYSISSG----KLRRY----F 65 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccC-----cccCCcEEEEecc----CcCCC----c
Confidence 4578999999999999999999999999999999997653321 111 1125666665421 11110 0
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhhhccccc
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKV 164 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 164 (492)
....+...+... ...-...+++++ .+||+||+..-+. .+..+|..+|+|+++.-..
T Consensus 66 ---~~~~~~~~~~~~-~~~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n---------------- 123 (352)
T PRK12446 66 ---DLKNIKDPFLVM-KGVMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD---------------- 123 (352)
T ss_pred ---hHHHHHHHHHHH-HHHHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC----------------
Confidence 001111111111 222334457888 8999999987554 4688999999999974221
Q ss_pred cccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcC-CcEEEe
Q 011142 165 FESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRH-DKVWCI 243 (492)
Q Consensus 165 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~v 243 (492)
.+|++.. ++..++ ++.+++ +|++ ....++ .+++++
T Consensus 124 -----------~~~g~~n------------------r~~~~~------a~~v~~-~f~~--------~~~~~~~~k~~~t 159 (352)
T PRK12446 124 -----------MTPGLAN------------------KIALRF------ASKIFV-TFEE--------AAKHLPKEKVIYT 159 (352)
T ss_pred -----------CCccHHH------------------HHHHHh------hCEEEE-Eccc--------hhhhCCCCCeEEE
Confidence 1222221 111111 222222 2221 112222 578899
Q ss_pred ccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCH-HhHHHHHHHHHhCCCCeEEEEeCCCcc
Q 011142 244 GPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIP-SQMRELGLGLEASNRPFIWVIREGETS 322 (492)
Q Consensus 244 Gp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~-~~~~~~~~a~~~~~~~vv~~~~~~~~~ 322 (492)
|+.+.+..... ......+.+.-.+++++|+|..||...... +.+..++..+. .+.+++|.+|....
T Consensus 160 G~Pvr~~~~~~-----------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~- 226 (352)
T PRK12446 160 GSPVREEVLKG-----------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNL- 226 (352)
T ss_pred CCcCCcccccc-----------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchH-
Confidence 96543321100 111111222323457799999999886432 23333444442 24889998876531
Q ss_pred hhhhhccchhhHHHHhcCCCeeeecCC-ch-hhcccCCCccccccccCchhhHHHHhcCCCeeccCCc-----cccchhH
Q 011142 323 KELKKWVVEDGFEERIKGRGLVIWGWA-PQ-VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF-----GDQFMNE 395 (492)
Q Consensus 323 ~~~~~~~lp~~~~~~~~~~nv~~~~~~-pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~-----~DQ~~na 395 (492)
+ ... .. ..++.+..|+ ++ .++++.+++ +|||||.+|+.|++++|+|+|.+|+. .||..||
T Consensus 227 ~--------~~~-~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na 293 (352)
T PRK12446 227 D--------DSL-QN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNA 293 (352)
T ss_pred H--------HHH-hh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHH
Confidence 1 100 00 1255566887 54 569999999 99999999999999999999999985 4899999
Q ss_pred HHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 396 KLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 396 ~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
..++ +.|+|..+... .++++.|.+++.++++|+
T Consensus 294 ~~l~-~~g~~~~l~~~-------------~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 294 ESFE-RQGYASVLYEE-------------DVTVNSLIKHVEELSHNN 326 (352)
T ss_pred HHHH-HCCCEEEcchh-------------cCCHHHHHHHHHHHHcCH
Confidence 9994 99999998765 489999999999999875
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=1.1e-24 Score=213.13 Aligned_cols=309 Identities=16% Similarity=0.198 Sum_probs=193.2
Q ss_pred cEEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 8 LHFVLFPFL-AQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 8 ~~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
|||+|...+ |.||+.++++||++| |||+|+|++.....+.+.. .+.+..++.... ........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~----~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGP----IQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceE----eccCCccc
Confidence 789888876 699999999999999 6999999998765443322 133433321100 00000111
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccc
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFE 166 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
...................+.+.+++++ .+||+||+|.. +.+..+|+..|||++.+.+.......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~~------------ 129 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLHP------------ 129 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHcccc------------
Confidence 0000000111111223445566778888 89999999954 45678999999999998777543210
Q ss_pred cCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhh-c-cCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEec
Q 011142 167 SVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGA-A-DTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIG 244 (492)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG 244 (492)
....+.- ..+......+.. . ...+...+.-++. . +.....++.++|
T Consensus 130 -------~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--------~~~~~~~~~~~~ 177 (318)
T PF13528_consen 130 -------NFWLPWD----------------QDFGRLIERYIDRYHFPPADRRLALSFY-P--------PLPPFFRVPFVG 177 (318)
T ss_pred -------cCCcchh----------------hhHHHHHHHhhhhccCCcccceecCCcc-c--------cccccccccccC
Confidence 0000000 001111122111 1 2233333333222 0 011113456788
Q ss_pred cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCC-CCeEEEEeCCCcch
Q 011142 245 PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASN-RPFIWVIREGETSK 323 (492)
Q Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~-~~vv~~~~~~~~~~ 323 (492)
|+..+... +.-. .+++.|+|++|..... .++++++..+ +++++. +....
T Consensus 178 p~~~~~~~-------------------~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~-- 227 (318)
T PF13528_consen 178 PIIRPEIR-------------------ELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA-- 227 (318)
T ss_pred chhccccc-------------------ccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc--
Confidence 77543221 1101 1345799999987643 6667777766 566666 44321
Q ss_pred hhhhccchhhHHHHhcCCCeeeecCC-c-hhhcccCCCccccccccCchhhHHHHhcCCCeeccCC--ccccchhHHHHH
Q 011142 324 ELKKWVVEDGFEERIKGRGLVIWGWA-P-QVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPL--FGDQFMNEKLVV 399 (492)
Q Consensus 324 ~~~~~~lp~~~~~~~~~~nv~~~~~~-p-q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~--~~DQ~~na~rv~ 399 (492)
- ...+|+.+.+|. + -.++|..+++ +|||||+||++|++++|+|+|++|. ..||..||+++
T Consensus 228 ------~-------~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l- 291 (318)
T PF13528_consen 228 ------D-------PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL- 291 (318)
T ss_pred ------c-------ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH-
Confidence 0 125799998887 4 4679999999 9999999999999999999999999 67999999999
Q ss_pred HHhccceeecccCCcccccccccccccCHHHHHHHHHHH
Q 011142 400 QILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKL 438 (492)
Q Consensus 400 e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~l 438 (492)
+++|+|..++.+ +++++.|.++|+++
T Consensus 292 ~~~G~~~~~~~~-------------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 292 EELGLGIVLSQE-------------DLTPERLAEFLERL 317 (318)
T ss_pred HHCCCeEEcccc-------------cCCHHHHHHHHhcC
Confidence 699999999876 59999999999865
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.6e-22 Score=196.43 Aligned_cols=323 Identities=19% Similarity=0.178 Sum_probs=202.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGV-IITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
++|++...++.||+.|.++|+++|.++|+ +|.+..+....+.... ...++.++.++.. ++...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~----~~~~~----- 64 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSG----GLRRK----- 64 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cccCceEEEEecc----ccccc-----
Confidence 46888888899999999999999999999 5777766433222111 1125667766532 11111
Q ss_pred cccccchHHHHHHHHh--hhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhhhccc
Q 011142 87 MVASLGLAFDFFTAAD--MLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTS 162 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~--~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 162 (492)
..+..+...+. ....+.++++++ .+||+||+-.-++ .+..+|..+|||.++
T Consensus 65 -----~~~~~~~~~~~~~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i------------------ 119 (357)
T COG0707 65 -----GSLKLLKAPFKLLKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVII------------------ 119 (357)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEE------------------
Confidence 11111111111 334456778888 8999999865444 678899999999998
Q ss_pred cccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhc-CCcEE
Q 011142 163 KVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIR-HDKVW 241 (492)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~ 241 (492)
++....|+...+. .. +.++.+. .+++..+ ... +.++.
T Consensus 120 ---------hEqn~~~G~ank~------------------~~------~~a~~V~-~~f~~~~--------~~~~~~~~~ 157 (357)
T COG0707 120 ---------HEQNAVPGLANKI------------------LS------KFAKKVA-SAFPKLE--------AGVKPENVV 157 (357)
T ss_pred ---------EecCCCcchhHHH------------------hH------Hhhceee-ecccccc--------ccCCCCceE
Confidence 3344445544321 00 1112222 2222111 001 14678
Q ss_pred Eec-cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCC-HHhHHHHHHHHHhCCCCeEEEEeCC
Q 011142 242 CIG-PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLI-PSQMRELGLGLEASNRPFIWVIREG 319 (492)
Q Consensus 242 ~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~-~~~~~~~~~a~~~~~~~vv~~~~~~ 319 (492)
.+| |+...-.. .+..-..+... .++++|+|.-||..... .+.+..+...+.+ +.+|++.++..
T Consensus 158 ~tG~Pvr~~~~~-------------~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~ 222 (357)
T COG0707 158 VTGIPVRPEFEE-------------LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN 222 (357)
T ss_pred EecCcccHHhhc-------------cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc
Confidence 888 55322110 01111111111 15779999999988632 2222333333333 47888888766
Q ss_pred CcchhhhhccchhhHHHHhcCCC-eeeecCCch-hhcccCCCccccccccCchhhHHHHhcCCCeeccCCc----cccch
Q 011142 320 ETSKELKKWVVEDGFEERIKGRG-LVIWGWAPQ-VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF----GDQFM 393 (492)
Q Consensus 320 ~~~~~~~~~~lp~~~~~~~~~~n-v~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~----~DQ~~ 393 (492)
. .+... ......| +.+.+|+.+ ..+++.+++ +||++|.+|+.|++++|+|+|.+|+. .||..
T Consensus 223 ~-~~~~~---------~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~ 290 (357)
T COG0707 223 D-LEELK---------SAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEY 290 (357)
T ss_pred h-HHHHH---------HHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHH
Confidence 4 22211 1111223 788889987 559999999 99999999999999999999999974 38999
Q ss_pred hHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 394 NEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 394 na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
||..+ ++.|+|..++.. .+|.+++.+.|.+++++++..+.|++++++
T Consensus 291 NA~~l-~~~gaa~~i~~~-------------~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~ 337 (357)
T COG0707 291 NAKFL-EKAGAALVIRQS-------------ELTPEKLAELILRLLSNPEKLKAMAENAKK 337 (357)
T ss_pred HHHHH-HhCCCEEEeccc-------------cCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999 599999999887 499999999999999875433334443333
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=4.8e-22 Score=194.16 Aligned_cols=304 Identities=15% Similarity=0.107 Sum_probs=171.5
Q ss_pred EEEEecCCC-cCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceE-EEEecCCccccCCCCCCCccc
Q 011142 9 HFVLFPFLA-QGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIK-IVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 9 ~il~~~~~~-~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~~~~ 86 (492)
||++...+. .||+.|.++||++|.+ ||+|+|+++......++.. ++. +..++.... ....+.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~--~~~~~~---- 64 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKL--KGEDGK---- 64 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceE--eecCCc----
Confidence 577766554 6999999999999999 9999999987733333322 222 222110000 001110
Q ss_pred cccccchHHHHH---HHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcccc
Q 011142 87 MVASLGLAFDFF---TAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSK 163 (492)
Q Consensus 87 ~~~~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 163 (492)
......+. ...........+++++ .+||+||+| ..+.+..+|+.+|||++.+..+....
T Consensus 65 ----~~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------- 126 (321)
T TIGR00661 65 ----VNIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------- 126 (321)
T ss_pred ----CcHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----------
Confidence 01111111 1101233455678888 899999999 44556889999999999876532110
Q ss_pred ccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEE-E
Q 011142 164 VFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVW-C 242 (492)
Q Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~-~ 242 (492)
.|+.... .. ......... ....++.+.+..+.... ...|+.+. .
T Consensus 127 -------------~~~~~~~-------~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~p~~~~~~ 171 (321)
T TIGR00661 127 -------------YPLKTDL-------IV----YPTMAALRI---FNERCERFIVPDYPFPY--------TICPKIIKNM 171 (321)
T ss_pred -------------CCcccch-------hH----HHHHHHHHH---hccccceEeeecCCCCC--------CCCccccccC
Confidence 0110000 00 000111111 11122222222211111 00000000 0
Q ss_pred eccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCC-CeEEEEeCCCc
Q 011142 243 IGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNR-PFIWVIREGET 321 (492)
Q Consensus 243 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~-~vv~~~~~~~~ 321 (492)
.+|. ......++... +.+.|+|.+|+... ..+++++.+.+. .+++ +....
T Consensus 172 ~~~~-------------------~~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i~--~~~~~ 222 (321)
T TIGR00661 172 EGPL-------------------IRYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIANVKFVC--YSYEV 222 (321)
T ss_pred CCcc-------------------cchhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCCeEEEE--eCCCC
Confidence 0111 11122222221 34467777777432 345677766553 4442 22211
Q ss_pred chhhhhccchhhHHHHhcCCCeeeecCCc--hhhcccCCCccccccccCchhhHHHHhcCCCeeccCCcc--ccchhHHH
Q 011142 322 SKELKKWVVEDGFEERIKGRGLVIWGWAP--QVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFG--DQFMNEKL 397 (492)
Q Consensus 322 ~~~~~~~~lp~~~~~~~~~~nv~~~~~~p--q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~--DQ~~na~r 397 (492)
..+. .+.|+.+.+|.| ..++|+.+++ +|||||.+|++|++++|+|++.+|... ||..||+.
T Consensus 223 --------~~~~-----~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~ 287 (321)
T TIGR00661 223 --------AKNS-----YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVK 287 (321)
T ss_pred --------Cccc-----cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHH
Confidence 1111 135889889997 3568888888 999999999999999999999999865 89999999
Q ss_pred HHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 398 VVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 398 v~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
+ +++|+|+.++..+ + ++.+++.++++|+
T Consensus 288 l-~~~g~~~~l~~~~-------------~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 288 L-EDLGCGIALEYKE-------------L---RLLEAILDIRNMK 315 (321)
T ss_pred H-HHCCCEEEcChhh-------------H---HHHHHHHhccccc
Confidence 9 5999999987752 3 6666777777776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=1.4e-19 Score=179.92 Aligned_cols=325 Identities=15% Similarity=0.102 Sum_probs=191.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
||||+|+..+..||...++.|++.|.++||+|++++.+.... .... ...++.++.++.+ ++...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~-----~~~g~~~~~~~~~----~~~~~----- 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLV-----PKAGIEFHFIPSG----GLRRK----- 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhcc-----ccCCCcEEEEecc----CcCCC-----
Confidence 589999998889999999999999999999999999865211 0000 1124555555421 11110
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC--ccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccc
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL--PYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKV 164 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 164 (492)
.......... ........+.+++++ .+||+|++.... ..+..+++..++|++......
T Consensus 65 --~~~~~l~~~~-~~~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------- 124 (357)
T PRK00726 65 --GSLANLKAPF-KLLKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA--------------- 124 (357)
T ss_pred --ChHHHHHHHH-HHHHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC---------------
Confidence 0001111111 112344456778888 899999999643 245567888999998531110
Q ss_pred cccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEec
Q 011142 165 FESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIG 244 (492)
Q Consensus 165 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG 244 (492)
.++. ..... .+.++.++..+...+ .. .-+.++.++|
T Consensus 125 ------------~~~~------------------~~r~~------~~~~d~ii~~~~~~~-----~~---~~~~~i~vi~ 160 (357)
T PRK00726 125 ------------VPGL------------------ANKLL------ARFAKKVATAFPGAF-----PE---FFKPKAVVTG 160 (357)
T ss_pred ------------CccH------------------HHHHH------HHHhchheECchhhh-----hc---cCCCCEEEEC
Confidence 0000 00000 011233333321111 01 2236788888
Q ss_pred cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCC--CeEEEEeCCCcc
Q 011142 245 PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNR--PFIWVIREGETS 322 (492)
Q Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~--~vv~~~~~~~~~ 322 (492)
+........ ... ....+...++.++|++..|+... ......+.+++.++.. .++|.+|....
T Consensus 161 n~v~~~~~~------------~~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~- 224 (357)
T PRK00726 161 NPVREEILA------------LAA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL- 224 (357)
T ss_pred CCCChHhhc------------ccc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH-
Confidence 553321100 000 00011112234567665555322 2222233366655433 44556665532
Q ss_pred hhhhhccchhhHHHHh-cCCCeeeecCCch-hhcccCCCccccccccCchhhHHHHhcCCCeeccCC----ccccchhHH
Q 011142 323 KELKKWVVEDGFEERI-KGRGLVIWGWAPQ-VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPL----FGDQFMNEK 396 (492)
Q Consensus 323 ~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~----~~DQ~~na~ 396 (492)
+.. .+.. ..-++.+.+|+.+ .++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+.
T Consensus 225 ~~~---------~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~ 293 (357)
T PRK00726 225 EEV---------RAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANAR 293 (357)
T ss_pred HHH---------HHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHH
Confidence 211 1111 1223778889854 679999999 9999999999999999999999997 368999999
Q ss_pred HHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHH
Q 011142 397 LVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRA 452 (492)
Q Consensus 397 rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a 452 (492)
.+ .+.|.|..++.+ .+++++|.++|.++++|++..+++++++
T Consensus 294 ~i-~~~~~g~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (357)
T PRK00726 294 AL-VDAGAALLIPQS-------------DLTPEKLAEKLLELLSDPERLEAMAEAA 335 (357)
T ss_pred HH-HHCCCEEEEEcc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99 499999999776 3789999999999999874444444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=8.1e-18 Score=166.86 Aligned_cols=325 Identities=16% Similarity=0.156 Sum_probs=191.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMV 88 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 88 (492)
+|++...+..||....+.|++.|.++||+|++++....... ... ...++.++.++... .... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~----~~~~-~----- 63 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLV-----PKAGIPLHTIPVGG----LRRK-G----- 63 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hcc-----cccCCceEEEEecC----cCCC-C-----
Confidence 58888888899999999999999999999999987542110 100 11235555554221 1110 0
Q ss_pred cccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC--ccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccc
Q 011142 89 ASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL--PYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFE 166 (492)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
....+...+. .......+.+++++ .+||+|++.... .++..+|...|+|++......
T Consensus 64 -~~~~~~~~~~-~~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~----------------- 122 (350)
T cd03785 64 -SLKKLKAPFK-LLKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA----------------- 122 (350)
T ss_pred -hHHHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------
Confidence 0011111111 12333456778888 899999987543 345678899999998521110
Q ss_pred cCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEeccC
Q 011142 167 SVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGPV 246 (492)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~ 246 (492)
.+++ ...+ ..+.++.++..+....+ + ..+.++..+|..
T Consensus 123 ----------~~~~------------------~~~~------~~~~~~~vi~~s~~~~~-----~---~~~~~~~~i~n~ 160 (350)
T cd03785 123 ----------VPGL------------------ANRL------LARFADRVALSFPETAK-----Y---FPKDKAVVTGNP 160 (350)
T ss_pred ----------CccH------------------HHHH------HHHhhCEEEEcchhhhh-----c---CCCCcEEEECCC
Confidence 0000 0000 11224455544422211 1 123577888854
Q ss_pred CCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh---CCCCeEEEEeCCCcch
Q 011142 247 SLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA---SNRPFIWVIREGETSK 323 (492)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~---~~~~vv~~~~~~~~~~ 323 (492)
....... .... .+.+...+++++|++..|+.... .....+.+++.. .+..+++.++.. ..+
T Consensus 161 v~~~~~~------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~--~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~ 224 (350)
T cd03785 161 VREEILA------------LDRE-RARLGLRPGKPTLLVFGGSQGAR--AINEAVPEALAELLRKRLQVIHQTGKG-DLE 224 (350)
T ss_pred CchHHhh------------hhhh-HHhcCCCCCCeEEEEECCcHhHH--HHHHHHHHHHHHhhccCeEEEEEcCCc-cHH
Confidence 3221100 0011 22222223455666666665421 111223344443 334556666554 322
Q ss_pred hhhhccchhhHHHHhcCCCeeeecCC-chhhcccCCCccccccccCchhhHHHHhcCCCeeccCCc----cccchhHHHH
Q 011142 324 ELKKWVVEDGFEERIKGRGLVIWGWA-PQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF----GDQFMNEKLV 398 (492)
Q Consensus 324 ~~~~~~lp~~~~~~~~~~nv~~~~~~-pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~----~DQ~~na~rv 398 (492)
.+.+ .. +.. ..|+.+.+|+ ...++|+.+++ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+
T Consensus 225 ~l~~-----~~-~~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l 295 (350)
T cd03785 225 EVKK-----AY-EEL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARAL 295 (350)
T ss_pred HHHH-----HH-hcc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHH
Confidence 2211 11 111 3689999998 44679999999 99999999999999999999999863 5788999999
Q ss_pred HHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHH
Q 011142 399 VQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRA 452 (492)
Q Consensus 399 ~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a 452 (492)
. +.|.|..++.. ..+.+++.++|.++++|++..+.+.+++
T Consensus 296 ~-~~g~g~~v~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 296 V-KAGAAVLIPQE-------------ELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred H-hCCCEEEEecC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5 99999988765 3689999999999998764444444444
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.74 E-value=4.3e-16 Score=154.38 Aligned_cols=321 Identities=16% Similarity=0.135 Sum_probs=176.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
|||+|++.+..||+.....||++|.++||+|++++.+.... .... ...++.++.++... .. . ..
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~~----~~-~-~~--- 64 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVGG----LR-R-KG--- 64 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEeccC----cC-C-CC---
Confidence 48999999999999988899999999999999998744211 0100 11246666554210 00 0 00
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhhhcccccc
Q 011142 88 VASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVF 165 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (492)
....+...... ......+.+++++ .+||+|++..... .+..+++.+|+|++......
T Consensus 65 --~~~~l~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------- 123 (348)
T TIGR01133 65 --SFRLIKTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA---------------- 123 (348)
T ss_pred --hHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC----------------
Confidence 00111111111 2233456778888 8999999976433 34557888999997421000
Q ss_pred ccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEecc
Q 011142 166 ESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGP 245 (492)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp 245 (492)
.++. .... ..+.++.+++.+....+ .+ ...+||.
T Consensus 124 -----------~~~~------------------~~~~------~~~~~d~ii~~~~~~~~---------~~--~~~~i~n 157 (348)
T TIGR01133 124 -----------VPGL------------------TNKL------LSRFAKKVLISFPGAKD---------HF--EAVLVGN 157 (348)
T ss_pred -----------CccH------------------HHHH------HHHHhCeeEECchhHhh---------cC--CceEEcC
Confidence 0000 0001 11223444443321111 11 2256663
Q ss_pred CCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh---CCCCeEEEEeCCCcc
Q 011142 246 VSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA---SNRPFIWVIREGETS 322 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~---~~~~vv~~~~~~~~~ 322 (492)
........ .+. ..+.+...++.++|.+..|+... ......+.++++. .+.++++..++. ..
T Consensus 158 ~v~~~~~~------------~~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~-~~ 221 (348)
T TIGR01133 158 PVRQEIRS------------LPV-PRERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN-DL 221 (348)
T ss_pred CcCHHHhc------------ccc-hhhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc-hH
Confidence 22111000 000 01112222234455444455432 2222223355543 345566544433 21
Q ss_pred hhhhhccchhhHHHHhcCCCe-eeecCC--chhhcccCCCccccccccCchhhHHHHhcCCCeeccCCc---cccchhHH
Q 011142 323 KELKKWVVEDGFEERIKGRGL-VIWGWA--PQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF---GDQFMNEK 396 (492)
Q Consensus 323 ~~~~~~~lp~~~~~~~~~~nv-~~~~~~--pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~---~DQ~~na~ 396 (492)
+. + .......++ .++.|. +-..+|+.+++ +|+++|.++++||+++|+|+|++|.. .+|..|+.
T Consensus 222 ~~-----l----~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~ 290 (348)
T TIGR01133 222 EK-----V----KNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAK 290 (348)
T ss_pred HH-----H----HHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHH
Confidence 21 1 111111121 222344 34678999999 99999988999999999999999864 46788999
Q ss_pred HHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHH
Q 011142 397 LVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRA 452 (492)
Q Consensus 397 rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a 452 (492)
.+ ++.|.|..++.. ..+.++|.++|.++++|++..+.+.+++
T Consensus 291 ~i-~~~~~G~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 291 FL-EDLGAGLVIRQK-------------ELLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred HH-HHCCCEEEEecc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99 599999888665 3689999999999998874333333333
No 35
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.73 E-value=9.1e-16 Score=153.89 Aligned_cols=334 Identities=14% Similarity=0.147 Sum_probs=184.0
Q ss_pred CccEEEEecCCC-cCCHHHHHHHHHHHHhCCCeEEEEeCCcc--hhhhhhHHHh-hhhcCCceEEEEecCCccccCCCCC
Q 011142 6 NQLHFVLFPFLA-QGHMIPMIDIARLLAQRGVIITIVTTPVN--AARFNGILAR-AIESGLQIKIVQFQLPCEEAGLPEG 81 (492)
Q Consensus 6 ~~~~il~~~~~~-~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~--~~~v~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~ 81 (492)
+++||++++... .||..+..+|+++|.++||+|.++++... .+.+.+.... +- ..+... |....-....
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~---~~~~~~----~~~~~~~~~~ 75 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYL---KSYTIG----KELYRLFYYG 75 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHH---HHHHHh----HHHHHHHHhc
Confidence 456899999775 69999999999999999999777765321 1111111000 00 000000 0000000000
Q ss_pred CCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHH--HHHHcCCCeEEEecchHHHHHHHhhh
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAH--IAGKFNIPRITFHGTCCFCLVCYNNL 159 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~ 159 (492)
.... .. . ..+..........+.+++++ .+||+||++........ .+..+++|.+.+.+...
T Consensus 76 ~~~~---~~-~--~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~--------- 138 (380)
T PRK13609 76 VEKI---YD-K--KIFSWYANFGRKRLKLLLQA--EKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFC--------- 138 (380)
T ss_pred cCcc---cc-h--HHHHHHHHHHHHHHHHHHHH--hCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCC---------
Confidence 0000 00 0 01111112335678899999 89999999865442222 23446788774322100
Q ss_pred ccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHh-hc-C
Q 011142 160 FTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKK-IR-H 237 (492)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~-~ 237 (492)
.+..+ ..+.++.+++.+-... ..+.. .. +
T Consensus 139 -----------------~~~~~---------------------------~~~~ad~i~~~s~~~~-----~~l~~~gi~~ 169 (380)
T PRK13609 139 -----------------LHKIW---------------------------VHREVDRYFVATDHVK-----KVLVDIGVPP 169 (380)
T ss_pred -----------------CCccc---------------------------ccCCCCEEEECCHHHH-----HHHHHcCCCh
Confidence 00000 1123455555542211 11111 11 2
Q ss_pred CcEEEec-cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-CCCeEEE
Q 011142 238 DKVWCIG-PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS-NRPFIWV 315 (492)
Q Consensus 238 ~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-~~~vv~~ 315 (492)
.++..+| |+...-... .....+..-+.-.+++++|++..|+.... ..+..+++++.+. +.++++.
T Consensus 170 ~ki~v~G~p~~~~f~~~-----------~~~~~~~~~~~l~~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv 236 (380)
T PRK13609 170 EQVVETGIPIRSSFELK-----------INPDIIYNKYQLCPNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVV 236 (380)
T ss_pred hHEEEECcccChHHcCc-----------CCHHHHHHHcCCCCCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEE
Confidence 4567777 442110000 01122222222223456777777776532 2355677777653 4667766
Q ss_pred EeCCCcchhhhhccchhhHHHHh--cCCCeeeecCCch-hhcccCCCccccccccCchhhHHHHhcCCCeecc-CCcccc
Q 011142 316 IREGETSKELKKWVVEDGFEERI--KGRGLVIWGWAPQ-VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTW-PLFGDQ 391 (492)
Q Consensus 316 ~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~-P~~~DQ 391 (492)
.+.+.. +-+.+.... .+.|+++.+|+++ .++++.+++ +|+.+|..|+.||+++|+|+|+. |..+.+
T Consensus 237 ~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~ 306 (380)
T PRK13609 237 CGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQE 306 (380)
T ss_pred eCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcc
Confidence 654321 111121111 1358999999987 479999999 99999988999999999999985 677778
Q ss_pred chhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHH
Q 011142 392 FMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 392 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
..|+..+ ++.|+|+.. -+.+++.++|.++++|++..+.++++++
T Consensus 307 ~~n~~~~-~~~G~~~~~-----------------~~~~~l~~~i~~ll~~~~~~~~m~~~~~ 350 (380)
T PRK13609 307 KENAMYF-ERKGAAVVI-----------------RDDEEVFAKTEALLQDDMKLLQMKEAMK 350 (380)
T ss_pred hHHHHHH-HhCCcEEEE-----------------CCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 8899999 588988643 3578899999999998744444444433
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.73 E-value=2.8e-16 Score=156.85 Aligned_cols=350 Identities=13% Similarity=0.035 Sum_probs=201.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCC--ceEEEEecCCccccCCCCCCCcc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGL--QIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
.||++...+..||++|. +|+++|.++|++|.|++.... .+++. |. .+.+..++. .++.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~-------g~~~~~~~~~l~v----~G~~------ 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAE-------GCEVLYSMEELSV----MGLR------ 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhC-------cCccccChHHhhh----ccHH------
Confidence 58999998999999999 999999999999999986531 12221 11 122222110 0000
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEE-cCCCccHHH--HHHHcCCCeEEEecchHHHHHHHhhhccc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIIS-DMCLPYTAH--IAGKFNIPRITFHGTCCFCLVCYNNLFTS 162 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~-D~~~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 162 (492)
..+..+.. .........+++++ .+||+||. |+..+.... +|+.+|||++.+.+.-...
T Consensus 66 ------~~l~~~~~-~~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa---------- 126 (385)
T TIGR00215 66 ------EVLGRLGR-LLKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA---------- 126 (385)
T ss_pred ------HHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh----------
Confidence 11111111 12334477788888 89999995 543333233 8899999999753211000
Q ss_pred cccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEE
Q 011142 163 KVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWC 242 (492)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (492)
+.. .-.+.+.+ .++.+++.. + .+.. ++. ..+.+..+
T Consensus 127 -----------------w~~---------------~~~r~l~~------~~d~v~~~~-~-~e~~---~~~-~~g~~~~~ 162 (385)
T TIGR00215 127 -----------------WRK---------------WRAKKIEK------ATDFLLAIL-P-FEKA---FYQ-KKNVPCRF 162 (385)
T ss_pred -----------------cCc---------------chHHHHHH------HHhHhhccC-C-CcHH---HHH-hcCCCEEE
Confidence 000 00111111 122222222 1 1222 122 22346678
Q ss_pred eccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEe
Q 011142 243 IGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIR 317 (492)
Q Consensus 243 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~ 317 (492)
||....+..... ........+.+.-.+++++|.+..||....-...+..+++++..+ +.++++...
T Consensus 163 vGnPv~~~~~~~---------~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 163 VGHPLLDAIPLY---------KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred ECCchhhhcccc---------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 993322211000 001122222223233567888888887753233455566665542 345555543
Q ss_pred CCCcchhhhhccchhhHHHHhc-CCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeecc----CCcc---
Q 011142 318 EGETSKELKKWVVEDGFEERIK-GRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTW----PLFG--- 389 (492)
Q Consensus 318 ~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~----P~~~--- 389 (492)
......... .+..... ...+.+..+ ....+++.+++ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 234 ~~~~~~~~~------~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~ 303 (385)
T TIGR00215 234 NFKRRLQFE------QIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIA 303 (385)
T ss_pred CchhHHHHH------HHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHH
Confidence 332111111 1111111 122333222 33568999999 9999999888 999999999999 8653
Q ss_pred ------ccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC----hhhHHHHHHHHHHHHHH
Q 011142 390 ------DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG----KEGEERRNRAVKLGQMA 459 (492)
Q Consensus 390 ------DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~----~~~~~~~~~a~~l~~~~ 459 (492)
+|..|+..++ ..++...+.-+ .+|++.|.+.+.++|+|+ ++.+.+++...++++++
T Consensus 304 ~~~~~~~~~~~~nil~-~~~~~pel~q~-------------~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 304 RRLVKTDYISLPNILA-NRLLVPELLQE-------------ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred HHHHcCCeeeccHHhc-CCccchhhcCC-------------CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 3888999995 89888777654 499999999999999998 88888888888888776
Q ss_pred HHHHhcCCchHHHHHHHH
Q 011142 460 NMAVQEGGSSHLNVTLVI 477 (492)
Q Consensus 460 ~~~~~~gg~~~~~~~~~~ 477 (492)
. ++|.+..+++.++
T Consensus 370 ~----~~~~~~~~a~~i~ 383 (385)
T TIGR00215 370 Y----CNADSERAAQAVL 383 (385)
T ss_pred c----CCCHHHHHHHHHh
Confidence 4 3455555555544
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.70 E-value=4.6e-15 Score=137.45 Aligned_cols=331 Identities=14% Similarity=0.138 Sum_probs=198.9
Q ss_pred CCccEEEEecCC--CcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC
Q 011142 5 ANQLHFVLFPFL--AQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 5 ~~~~~il~~~~~--~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 80 (492)
.+++||+|.+.- +.||+..++.||+.|.+. |.+|+++++.....-+.- ..++.+..+| .+..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LP------sl~k 72 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLP------SLIK 72 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecC------ceEe
Confidence 346799999954 699999999999999999 999999998653332321 1368888776 2322
Q ss_pred CCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHH------HHH--HcCCCeEEEecchHHH
Q 011142 81 GCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAH------IAG--KFNIPRITFHGTCCFC 152 (492)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~------~A~--~lgiP~v~~~~~~~~~ 152 (492)
+..........+. ...+.......-+...++. .+||++|+|.+=+ ++. +++ ..+-+++.
T Consensus 73 ~~~G~~~~~d~~~--~l~e~~~~Rs~lil~t~~~--fkPDi~IVd~~P~-Glr~EL~ptL~yl~~~~t~~vL-------- 139 (400)
T COG4671 73 GDNGEYGLVDLDG--DLEETKKLRSQLILSTAET--FKPDIFIVDKFPF-GLRFELLPTLEYLKTTGTRLVL-------- 139 (400)
T ss_pred cCCCceeeeecCC--CHHHHHHHHHHHHHHHHHh--cCCCEEEEecccc-chhhhhhHHHHHHhhcCCccee--------
Confidence 2222111111111 1222222334445566677 8999999997633 310 010 01111111
Q ss_pred HHHHhhhccccccccCcCCCcccccCCCCCCccccccccCccc-----cchhHHHHHHhhhccCCccEEEEcChhhhcHH
Q 011142 153 LVCYNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSL-----GSRFNVFQKKMGAADTGTYGVIVNSFEELEPA 227 (492)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 227 (492)
++.+ .++.+... +...-+..++++ |.+++...+.+..+
T Consensus 140 --------------------------~lr~-----i~D~p~~~~~~w~~~~~~~~I~r~y------D~V~v~GdP~f~d~ 182 (400)
T COG4671 140 --------------------------GLRS-----IRDIPQELEADWRRAETVRLINRFY------DLVLVYGDPDFYDP 182 (400)
T ss_pred --------------------------ehHh-----hhhchhhhccchhhhHHHHHHHHhh------eEEEEecCccccCh
Confidence 0100 11111111 111222222222 45566665554321
Q ss_pred --HHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHH
Q 011142 228 --YIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGL 305 (492)
Q Consensus 228 --~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~ 305 (492)
.++.+ .....+++|+|-+ .++-.... ++. .| . +++-.|+||-|.... -.+++...+.|.
T Consensus 183 ~~~~~~~-~~i~~k~~ytG~v-q~~~~~~~----------~p~---~~--~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~ 243 (400)
T COG4671 183 LTEFPFA-PAIRAKMRYTGFV-QRSLPHLP----------LPP---HE--A-PEGFDILVSVGGGAD-GAELIETALAAA 243 (400)
T ss_pred hhcCCcc-HhhhhheeEeEEe-eccCcCCC----------CCC---cC--C-CccceEEEecCCChh-hHHHHHHHHHHh
Confidence 12222 2233789999988 22211000 010 01 1 233468899887553 566777776666
Q ss_pred Hh-CCCCeEEEEeCCCcchhhhhccchhhHHHHh-----cCCCeeeecCCch-hhcccCCCccccccccCchhhHHHHhc
Q 011142 306 EA-SNRPFIWVIREGETSKELKKWVVEDGFEERI-----KGRGLVIWGWAPQ-VLILSHPSIGGFLTHCGWNSTIEGVSA 378 (492)
Q Consensus 306 ~~-~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~ 378 (492)
.. .+.+-.|.+=.+.. .|.....+. ..+++.+..|..+ ..++..++. +|+-||+||++|-|.+
T Consensus 244 ~~l~~l~~~~~ivtGP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~ 313 (400)
T COG4671 244 QLLAGLNHKWLIVTGPF--------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSF 313 (400)
T ss_pred hhCCCCCcceEEEeCCC--------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhC
Confidence 54 34442443322221 554433221 2478999999887 669999999 9999999999999999
Q ss_pred CCCeeccCCcc---ccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 379 GLPLLTWPLFG---DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 379 GvP~v~~P~~~---DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
|+|.+++|... ||-.-|.|+ +++|+.-++.++ .++++.++++|...++-+
T Consensus 314 ~k~aLivPr~~p~eEQliRA~Rl-~~LGL~dvL~pe-------------~lt~~~La~al~~~l~~P 366 (400)
T COG4671 314 GKPALIVPRAAPREEQLIRAQRL-EELGLVDVLLPE-------------NLTPQNLADALKAALARP 366 (400)
T ss_pred CCceEEeccCCCcHHHHHHHHHH-HhcCcceeeCcc-------------cCChHHHHHHHHhcccCC
Confidence 99999999864 999999999 699999999887 599999999999988733
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=1.7e-15 Score=144.30 Aligned_cols=105 Identities=16% Similarity=0.133 Sum_probs=78.1
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhC--CCCeEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCchh-hcc
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEAS--NRPFIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQV-LIL 355 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~--~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~-~lL 355 (492)
.+.|++++|...... ....+++++... +.++.+.+|.... ..+.+.... ...|+.+..|+++. .++
T Consensus 170 ~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~--------~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP--------NLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc--------CHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 347899999655422 344566777653 4577777766532 112222221 24689999999985 799
Q ss_pred cCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHH
Q 011142 356 SHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKL 397 (492)
Q Consensus 356 ~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~r 397 (492)
+.+++ +||+|| +|++|+++.|+|+|++|...+|..||..
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999864
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=1.2e-14 Score=145.87 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=102.7
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHh--CCCCeEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch-hhc
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEA--SNRPFIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ-VLI 354 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~--~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~~l 354 (492)
++++|+++.|+... ...+..+++++.+ .+.++++..|.+.. +-+.+.+.. ...++.+.+|+.+ .++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~--------l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE--------LKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH--------HHHHHHHHhccCCCeEEEeccchHHHH
Confidence 45688888888762 2345555555432 34566666554321 111122211 2357888899976 469
Q ss_pred ccCCCccccccccCchhhHHHHhcCCCeecc-CCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHH
Q 011142 355 LSHPSIGGFLTHCGWNSTIEGVSAGLPLLTW-PLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRN 433 (492)
Q Consensus 355 L~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~-P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (492)
++.+++ +|+..|..|+.||+++|+|+|+. |..++|..|+..+ ++.|+|+.. -+.+++.+
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~-----------------~~~~~l~~ 330 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA-----------------DTPEEAIK 330 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe-----------------CCHHHHHH
Confidence 999999 99998888999999999999998 7777788999999 599999754 35788999
Q ss_pred HHHHHhccChhhHHHHHHHHHH
Q 011142 434 AVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 434 ai~~ll~~~~~~~~~~~~a~~l 455 (492)
+|.++++|++..+.++++++++
T Consensus 331 ~i~~ll~~~~~~~~m~~~~~~~ 352 (391)
T PRK13608 331 IVASLTNGNEQLTNMISTMEQD 352 (391)
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 9999998874444444444443
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.64 E-value=2.4e-14 Score=143.70 Aligned_cols=333 Identities=13% Similarity=0.049 Sum_probs=170.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
+|||+++..+..||+.|.. ++++|.++++++.+++.... .+.+.. ....+.++.++ -.
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~---------~~----- 58 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG-----CESLFDMEELA---------VM----- 58 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC-----CccccCHHHhh---------hc-----
Confidence 4699999999999999998 99999999888888875321 122110 00011111111 00
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEE-cCCCccH--HHHHHHcCCCeEEEecchHHHHHHHhhhcccc
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIIS-DMCLPYT--AHIAGKFNIPRITFHGTCCFCLVCYNNLFTSK 163 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~-D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 163 (492)
.....+..+ .........+.+++++ .+||+|++ ++...+. ...|...|||++.+.....
T Consensus 59 --g~~~~~~~~-~~~~~~~~~~~~~l~~--~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~------------- 120 (380)
T PRK00025 59 --GLVEVLPRL-PRLLKIRRRLKRRLLA--EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV------------- 120 (380)
T ss_pred --cHHHHHHHH-HHHHHHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch-------------
Confidence 000111111 1122345567788888 89999886 3222233 3346788999886422100
Q ss_pred ccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEe
Q 011142 164 VFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCI 243 (492)
Q Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~v 243 (492)
....++ ....+ .+.++.+++.+-.. .. .+.. .+.++.++
T Consensus 121 ----------~~~~~~------------------~~~~~-------~~~~d~i~~~~~~~--~~---~~~~-~g~~~~~~ 159 (380)
T PRK00025 121 ----------WAWRQG------------------RAFKI-------AKATDHVLALFPFE--AA---FYDK-LGVPVTFV 159 (380)
T ss_pred ----------hhcCch------------------HHHHH-------HHHHhhheeCCccC--HH---HHHh-cCCCeEEE
Confidence 000000 00010 11123334333111 11 1221 22347788
Q ss_pred ccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeC
Q 011142 244 GPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIRE 318 (492)
Q Consensus 244 Gp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~ 318 (492)
|....+.... ........+.+.-.+++++|.+..||........+..+++++..+ +.+++|..+.
T Consensus 160 G~p~~~~~~~----------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~ 229 (380)
T PRK00025 160 GHPLADAIPL----------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVN 229 (380)
T ss_pred CcCHHHhccc----------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 8322111000 001122222233222455667766765542223344555655432 3466776542
Q ss_pred CCcchhhhhccchhhHHHHhcC---CCeeeecCCc-hhhcccCCCccccccccCchhhHHHHhcCCCeeccCCcc-----
Q 011142 319 GETSKELKKWVVEDGFEERIKG---RGLVIWGWAP-QVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFG----- 389 (492)
Q Consensus 319 ~~~~~~~~~~~lp~~~~~~~~~---~nv~~~~~~p-q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~----- 389 (492)
....+ .+.+.... -++.+. .+ -..+++.+++ +|+.+|.+++ |++++|+|+|.+|-..
T Consensus 230 ~~~~~---------~~~~~~~~~~~~~v~~~--~~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~ 295 (380)
T PRK00025 230 PKRRE---------QIEEALAEYAGLEVTLL--DGQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFW 295 (380)
T ss_pred hhhHH---------HHHHHHhhcCCCCeEEE--cccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHH
Confidence 32211 12111111 133332 23 3568999999 9999998887 9999999999985321
Q ss_pred ---ccchh-----HHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Q 011142 390 ---DQFMN-----EKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQM 458 (492)
Q Consensus 390 ---DQ~~n-----a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~ 458 (492)
.|..| +..++ +.+++..+... ..+++.|.+++.++++|++..+++.++++++.+.
T Consensus 296 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 358 (380)
T PRK00025 296 IAKRLVKVPYVSLPNLLA-GRELVPELLQE-------------EATPEKLARALLPLLADGARRQALLEGFTELHQQ 358 (380)
T ss_pred HHHHHHcCCeeehHHHhc-CCCcchhhcCC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 22222 22331 33333333322 3789999999999999986666666666555544
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.53 E-value=4.1e-12 Score=127.36 Aligned_cols=141 Identities=14% Similarity=0.092 Sum_probs=94.7
Q ss_pred hcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh---------CCCCeEEEEeCCCcchhhhhccchhhHHHHhcC
Q 011142 270 CLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA---------SNRPFIWVIREGETSKELKKWVVEDGFEERIKG 340 (492)
Q Consensus 270 l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~---------~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~ 340 (492)
+.+-+.-.+++++|.+..|+..... +..+++++.. .+.++++.+|.+.. +-+.+......
T Consensus 196 ~r~~~gl~~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~ 264 (382)
T PLN02605 196 LRRELGMDEDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWK 264 (382)
T ss_pred HHHHcCCCCCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhccc
Confidence 3333333345667777666654322 3333333332 23556666654421 11111111113
Q ss_pred CCeeeecCCch-hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccc-hhHHHHHHHhccceeecccCCccccc
Q 011142 341 RGLVIWGWAPQ-VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQF-MNEKLVVQILKIGVKVGVESPMIWGE 418 (492)
Q Consensus 341 ~nv~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~-~na~rv~e~~G~G~~l~~~~~~~~~~ 418 (492)
.++.+.+|+++ .++++.+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+. +.|.|+.+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~---------- 331 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS---------- 331 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec----------
Confidence 46888899987 559999999 999999999999999999999998766665 7999894 89998743
Q ss_pred ccccccccCHHHHHHHHHHHhcc
Q 011142 419 EQKIGVLMKRDDVRNAVEKLMDE 441 (492)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~ll~~ 441 (492)
-++++|.++|.++++|
T Consensus 332 -------~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 332 -------ESPKEIARIVAEWFGD 347 (382)
T ss_pred -------CCHHHHHHHHHHHHcC
Confidence 3688999999999987
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.50 E-value=5.1e-12 Score=126.38 Aligned_cols=335 Identities=16% Similarity=0.101 Sum_probs=176.8
Q ss_pred CCcCCHHHHHHHHHHHHh--CCCeEE---EEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC-CCCcccccc
Q 011142 16 LAQGHMIPMIDIARLLAQ--RGVIIT---IVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE-GCENLDMVA 89 (492)
Q Consensus 16 ~~~GH~~p~l~LA~~L~~--rGH~Vt---~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~~~~~~~ 89 (492)
-+.|-=.--++||++|.+ .|++|. ++++....+ +. .+.... ++ ..+|. ++.....
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~---------~ip~~g-~~----~~~~sgg~~~~~~-- 65 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NL---------GIPIIG-PT----KELPSGGFSYQSL-- 65 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hC---------CCceeC-CC----CCCCCCCccCCCH--
Confidence 455556677899999998 599999 999864322 10 122211 11 02222 2211111
Q ss_pred ccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccccCc
Q 011142 90 SLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFESVS 169 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
...+...+.-.-.....-..++++...+||+||+-.-+. ...+|...|+|++++.+.-.-.. +... +..+
T Consensus 66 -~~~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~------~~~~--~~~~ 135 (396)
T TIGR03492 66 -RGLLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY------WESG--PRRS 135 (396)
T ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee------ecCC--CCCc
Confidence 122222222111111122334455112899999776655 78899999999998644421000 0000 0000
Q ss_pred CCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEec-cCCC
Q 011142 170 SESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIG-PVSL 248 (492)
Q Consensus 170 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG-p~~~ 248 (492)
........||... ..+ + .++ -..+.++.+++..-. .-.++. ..+-++.++| |+..
T Consensus 136 ~~~~~~~~~G~~~--------------~p~-e-~n~--l~~~~a~~v~~~~~~-----t~~~l~-~~g~k~~~vGnPv~d 191 (396)
T TIGR03492 136 PSDEYHRLEGSLY--------------LPW-E-RWL--MRSRRCLAVFVRDRL-----TARDLR-RQGVRASYLGNPMMD 191 (396)
T ss_pred cchhhhccCCCcc--------------CHH-H-HHH--hhchhhCEEeCCCHH-----HHHHHH-HCCCeEEEeCcCHHh
Confidence 0000000111110 011 1 011 122334555544411 222333 2345899999 6532
Q ss_pred CCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC----CCCeEEEEeCCCcchh
Q 011142 249 SNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS----NRPFIWVIREGETSKE 324 (492)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~----~~~vv~~~~~~~~~~~ 324 (492)
.-... ... . + .+++++|.+--||...-....+..+++++..+ +..|++.+.+......
T Consensus 192 ~l~~~-------------~~~--~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~ 253 (396)
T TIGR03492 192 GLEPP-------------ERK--P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEK 253 (396)
T ss_pred cCccc-------------ccc--c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHH
Confidence 21100 000 1 1 12446788888998664444455666666653 5678888755543322
Q ss_pred hhhccchh-hHHH---------HhcCCCeeeecCCch-hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccch
Q 011142 325 LKKWVVED-GFEE---------RIKGRGLVIWGWAPQ-VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFM 393 (492)
Q Consensus 325 ~~~~~lp~-~~~~---------~~~~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~ 393 (492)
.... +.+ ++.. ....+++.+..|..+ .++++.+++ +|+-.|..| .|+++.|+|+|.+|+...|.
T Consensus 254 ~~~~-l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~- 328 (396)
T TIGR03492 254 LQAI-LEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF- 328 (396)
T ss_pred HHHH-HHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-
Confidence 2110 100 0000 000123555455544 669999999 999999766 99999999999999877786
Q ss_pred hHHHHHHHh----ccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 394 NEKLVVQIL----KIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 394 na~rv~e~~----G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
|+... ++. |.++.+.. .+.+.|.+++.++++|+
T Consensus 329 na~~~-~~~~~l~g~~~~l~~---------------~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 329 TYGFA-EAQSRLLGGSVFLAS---------------KNPEQAAQVVRQLLADP 365 (396)
T ss_pred HHHHH-HhhHhhcCCEEecCC---------------CCHHHHHHHHHHHHcCH
Confidence 98777 464 76666643 34589999999999886
No 43
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.46 E-value=3.1e-15 Score=131.71 Aligned_cols=137 Identities=16% Similarity=0.207 Sum_probs=97.4
Q ss_pred EEEEeeCCCcCCC-HHhHHHHHHHHHh--CCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCc-hhhcccC
Q 011142 282 VVYACLGSLCNLI-PSQMRELGLGLEA--SNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAP-QVLILSH 357 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~-~~~~~~~~~a~~~--~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p-q~~lL~~ 357 (492)
+|+|+.||..... .+.+..+...+.. .+.+|++.+|...... . ...+. ....|+.+.+|++ ..+++..
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~-~-----~~~~~--~~~~~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE-L-----KIKVE--NFNPNVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH-H-----CCCHC--CTTCCCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH-H-----HHHHh--ccCCcEEEEechhhHHHHHHH
Confidence 4899999876521 1122223333332 2578999988763211 1 11110 0125889999999 5779999
Q ss_pred CCccccccccCchhhHHHHhcCCCeeccCCcc----ccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHH
Q 011142 358 PSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFG----DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRN 433 (492)
Q Consensus 358 ~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~----DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (492)
+++ +|||||.||++|++++|+|+|++|... +|..||..++ +.|+|..+... ..+.+.|.+
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~-------------~~~~~~L~~ 136 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDES-------------ELNPEELAE 136 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECC-------------C-SCCCHHH
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCcc-------------cCCHHHHHH
Confidence 999 999999999999999999999999988 9999999995 99999998876 477899999
Q ss_pred HHHHHhccC
Q 011142 434 AVEKLMDEG 442 (492)
Q Consensus 434 ai~~ll~~~ 442 (492)
+|.++++++
T Consensus 137 ~i~~l~~~~ 145 (167)
T PF04101_consen 137 AIEELLSDP 145 (167)
T ss_dssp HHHCHCCCH
T ss_pred HHHHHHcCc
Confidence 999999876
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.39 E-value=3.2e-10 Score=116.79 Aligned_cols=139 Identities=15% Similarity=0.143 Sum_probs=89.6
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhC-CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchh---hcccCC
Q 011142 283 VYACLGSLCNLIPSQMRELGLGLEAS-NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQV---LILSHP 358 (492)
Q Consensus 283 Vyvs~Gs~~~~~~~~~~~~~~a~~~~-~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~lL~~~ 358 (492)
+++..|+... ...+..++++++.. +.+++ .+|.+... +.+.......|+.+.+|+++. .+++.+
T Consensus 265 ~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~~~---------~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 265 LIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGPYR---------EELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred EEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCChHH---------HHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 4455577653 34466677888765 44544 34443322 222222334588899999754 388889
Q ss_pred CccccccccC----chhhHHHHhcCCCeeccCCccccchhHHHHHHH---hccceeecccCCcccccccccccccCHHHH
Q 011142 359 SIGGFLTHCG----WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQI---LKIGVKVGVESPMIWGEEQKIGVLMKRDDV 431 (492)
Q Consensus 359 ~~~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~---~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (492)
++ ||.-.. .+++.||+++|+|+|+.... .....+ ++ -+.|+.++. -+.+++
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~---------------~d~~~l 390 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTP---------------GDVDDC 390 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCC---------------CCHHHH
Confidence 98 774432 35789999999999987543 233344 35 567777755 367899
Q ss_pred HHHHHHHhccChhhHHHHHHHHHH
Q 011142 432 RNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 432 ~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
+++|.++++|++..+.+.+++++.
T Consensus 391 a~~i~~ll~~~~~~~~~~~~a~~~ 414 (465)
T PLN02871 391 VEKLETLLADPELRERMGAAAREE 414 (465)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999875555566666553
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.33 E-value=3.5e-09 Score=104.88 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=71.3
Q ss_pred CCCeeeecCCchhh---cccCCCccccccccC----chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAPQVL---ILSHPSIGGFLTHCG----WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..|+.+.+|+++.+ +++.+++ +|..+. .+++.||+++|+|+|+.+..+ +...+ ++.+.|...+.
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcCC--
Confidence 56899999998654 7999998 886654 378999999999999887543 55566 47788877754
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHH
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLG 456 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~ 456 (492)
.+.+++.++|.++++|++..+.+.+++.+..
T Consensus 317 -------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 317 -------------GDAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred -------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4678899999999998855455555544433
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.29 E-value=6.5e-12 Score=106.96 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=79.4
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc-ccc
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL-DMV 88 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~~ 88 (492)
|+|++.++.||++|+++||++|++|||+|++++++.+++.+.+. ++.|..++.+ ...... ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~-------~~~~~~~~~~ 64 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD-------SRLPRSLEPL 64 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC-------GGGGHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC-------cCcCcccchh
Confidence 78999999999999999999999999999999999988887553 7999987643 000000 000
Q ss_pred cccchHHHHHHHHhhhhHHHHHHHHhc------CCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchH
Q 011142 89 ASLGLAFDFFTAADMLQEPVENFFAQL------KPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCC 150 (492)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 150 (492)
.................+.+.+...+. ....|+++.+.....+..+|+++|||++.....+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 65 ANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 000111111111112222222222111 14688888898888889999999999999766553
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=3.2e-10 Score=102.58 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=100.9
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch-hhcccCCC
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ-VLILSHPS 359 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~~lL~~~~ 359 (492)
-|+||+|..- +......++..+..-++.+-.++++..+ -+...+++. ..+|+.+.-.... ..+++.++
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p--------~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNP--------TLKNLRKRAEKYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCc--------chhHHHHHHhhCCCeeeEecchhHHHHHHhcc
Confidence 5999998754 3445566777777766666666664332 122333333 2566665444443 45999999
Q ss_pred ccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHh
Q 011142 360 IGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLM 439 (492)
Q Consensus 360 ~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll 439 (492)
+ .|+-||. |++|++.-|+|.+++|+...|--.|... +.+|+-.-++.. +++......+.++.
T Consensus 230 ~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~--------------l~~~~~~~~~~~i~ 291 (318)
T COG3980 230 L--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYH--------------LKDLAKDYEILQIQ 291 (318)
T ss_pred h--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCC--------------CchHHHHHHHHHhh
Confidence 9 9998874 8999999999999999999999999999 599888766543 77778888888899
Q ss_pred ccChhhHHHHHHHHH
Q 011142 440 DEGKEGEERRNRAVK 454 (492)
Q Consensus 440 ~~~~~~~~~~~~a~~ 454 (492)
+|. ..|.+...
T Consensus 292 ~d~----~~rk~l~~ 302 (318)
T COG3980 292 KDY----ARRKNLSF 302 (318)
T ss_pred hCH----HHhhhhhh
Confidence 886 54444433
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.23 E-value=1.8e-08 Score=99.53 Aligned_cols=142 Identities=17% Similarity=0.163 Sum_probs=87.2
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhC---CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhh---
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEAS---NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVL--- 353 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~---~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~--- 353 (492)
.+.+++..|+... ...+..+++++..+ +.++++. |......... . ......|+.+.+|+++.+
T Consensus 190 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~~~~~~~~-------~-~~~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 190 GRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNGLELEEES-------Y-ELEGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCchhhhHHH-------H-hhcCCCeEEEeCCCCHHHHHH
Confidence 3356666777653 22344555555543 4555444 3332211000 0 001246899999997544
Q ss_pred cccCCCcccccc----ccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCH
Q 011142 354 ILSHPSIGGFLT----HCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKR 428 (492)
Q Consensus 354 lL~~~~~~~~It----HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 428 (492)
+++.+++ +|. ..|. .++.||+++|+|+|+.+. ..+...+ +..+.|..... -+.
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~---------------~d~ 316 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPP---------------GDA 316 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECC---------------CCH
Confidence 6888988 663 2333 579999999999998654 3456666 46557777655 358
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 429 DDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 429 ~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
+++.+++.++++|++..+.+.+++++
T Consensus 317 ~~l~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03823 317 EDLAAALERLIDDPDLLERLRAGIEP 342 (359)
T ss_pred HHHHHHHHHHHhChHHHHHHHHhHHH
Confidence 99999999999987544444444433
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=1.9e-08 Score=100.43 Aligned_cols=331 Identities=12% Similarity=0.107 Sum_probs=170.0
Q ss_pred cEEEEecCCC-cCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 8 LHFVLFPFLA-QGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 8 ~~il~~~~~~-~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
|||++++.|. .|.-.-...||+.|.+.||+|++++....... .. ...++.++.++.+. .+. .
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~-~~-------~~~~~~~~~~~~~~----~~~----~- 63 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRL-DE-------YSPNIFFHEVEVPQ----YPL----F- 63 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcch-hh-------hccCeEEEEecccc----cch----h-
Confidence 5888888765 78888899999999999999999987532111 00 01234444433210 000 0
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHH-Hc---CCCeEEEecchHHHHHHHhhhc
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAG-KF---NIPRITFHGTCCFCLVCYNNLF 160 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~-~l---giP~v~~~~~~~~~~~~~~~~~ 160 (492)
.. .. ........+.+++++ .+||+|.+-.... ....++. .. |+|++..........
T Consensus 64 --~~-~~------~~~~~~~~l~~~i~~--~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------- 125 (371)
T cd04962 64 --QY-PP------YDLALASKIAEVAKR--YKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITL------- 125 (371)
T ss_pred --hc-ch------hHHHHHHHHHHHHhc--CCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCcccc-------
Confidence 00 00 011234566777888 8999999754332 1222332 22 899886433211000
Q ss_pred cccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhh--cCC
Q 011142 161 TSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKI--RHD 238 (492)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~~~ 238 (492)
.+... .+... .....+.++.++..+....+ ..... ...
T Consensus 126 -----------------~~~~~---------------~~~~~---~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~ 165 (371)
T cd04962 126 -----------------VGQDP---------------SFQPA---TRFSIEKSDGVTAVSESLRQ-----ETYELFDITK 165 (371)
T ss_pred -----------------ccccc---------------cchHH---HHHHHhhCCEEEEcCHHHHH-----HHHHhcCCcC
Confidence 00000 00000 11123446666665533211 12222 123
Q ss_pred cEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh----CCCCeEE
Q 011142 239 KVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA----SNRPFIW 314 (492)
Q Consensus 239 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~----~~~~vv~ 314 (492)
++..+.......... ..............++ ..+++.+|.... ...+..+++++.. .+.++++
T Consensus 166 ~i~vi~n~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i 232 (371)
T cd04962 166 EIEVIPNFVDEDRFR----------PKPDEALKRRLGAPEG-EKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLL 232 (371)
T ss_pred CEEEecCCcCHhhcC----------CCchHHHHHhcCCCCC-CeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEE
Confidence 455554322110000 0011111112222222 345566676653 3344455555542 3455555
Q ss_pred EEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch-hhcccCCCcccccc----ccCchhhHHHHhcCCCeeccCCc
Q 011142 315 VIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ-VLILSHPSIGGFLT----HCGWNSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~~lL~~~~~~~~It----HgG~~s~~Eal~~GvP~v~~P~~ 388 (492)
.- .......+.. ...+. ...++.+.++.++ ..++..+++ +|. -|...++.||+++|+|+|+...
T Consensus 233 ~G-~g~~~~~~~~------~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~- 302 (371)
T cd04962 233 VG-DGPERSPAER------LARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA- 302 (371)
T ss_pred Ec-CCcCHHHHHH------HHHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC-
Confidence 53 3322221111 11111 1457888888876 558888888 662 2334699999999999998644
Q ss_pred cccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 389 GDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 389 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
...+..+ ++-..|...+. -+.+++.++|.++++|++..+.+++++++.
T Consensus 303 ---~~~~e~i-~~~~~G~~~~~---------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 303 ---GGIPEVV-KHGETGFLVDV---------------GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred ---CCchhhh-cCCCceEEcCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3455555 35456765544 468899999999998875555556665554
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.22 E-value=1.4e-08 Score=101.18 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=88.9
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhC----CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhh--
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEAS----NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVL-- 353 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~-- 353 (492)
++.+++..|+... ...+..+++++..+ +.++++ +|.........+ ........|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~~~~~~~------~~~~~~~~~v~~~g~~~~~~~~ 289 (394)
T cd03794 219 DKFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRFLI-VGDGPEKEELKE------LAKALGLDNVTFLGRVPKEELP 289 (394)
T ss_pred CcEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEEEE-eCCcccHHHHHH------HHHHcCCCcEEEeCCCChHHHH
Confidence 3456667777654 22344444444432 344444 343332211111 11122357899999998644
Q ss_pred -cccCCCccccccccC---------chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccc
Q 011142 354 -ILSHPSIGGFLTHCG---------WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIG 423 (492)
Q Consensus 354 -lL~~~~~~~~ItHgG---------~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~ 423 (492)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|...+.
T Consensus 290 ~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~~------------- 349 (394)
T cd03794 290 ELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVPP------------- 349 (394)
T ss_pred HHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeCC-------------
Confidence 7888888 664322 234799999999999988665433 33 24466766644
Q ss_pred cccCHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Q 011142 424 VLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQ 457 (492)
Q Consensus 424 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~ 457 (492)
-+.++++++|.++++|++..+.+.+++++...
T Consensus 350 --~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 350 --GDPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred --CCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 36899999999999888666666666655444
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.20 E-value=1.1e-08 Score=103.08 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=68.8
Q ss_pred CCCeeeecCCchhh---cccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAPQVL---ILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..|+.+.+|+|+.+ ++..+++ ++.. |-..++.||+++|+|+|+.... .....+ ++.+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeCC--
Confidence 46899999999755 5888888 7743 2236899999999999987543 355556 46678877755
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
-+.++++++|.++++|++..+.+.+++++.
T Consensus 353 -------------~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 353 -------------RDPEALAAALRRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 468999999999998875444555555443
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.18 E-value=4.3e-08 Score=97.19 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=69.5
Q ss_pred CCCeeeecCCchhh---cccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAPQVL---ILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..|+.+.+++|+.+ ++..+++ +|.. |..+++.||+++|+|+|+... ...+..+ ++.+.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCCC-
Confidence 56899999998754 6888888 6633 334789999999999998653 3455556 466778777654
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQM 458 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~ 458 (492)
+. ++.+++.++++|++..+.+.+++++..+.
T Consensus 330 --------------~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 330 --------------DE-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred --------------CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 12 89999999999885555555555555544
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.16 E-value=6.4e-08 Score=98.15 Aligned_cols=354 Identities=11% Similarity=0.043 Sum_probs=174.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
..||++++....|+-..+..+|++|+++||+|++++........... .+.++.++.+... +.....
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~~~------~~~~~~-- 68 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLPPP------PQRLNK-- 68 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECCCC------cccccc--
Confidence 46788888888999899999999999999999999875322111100 2346777766421 100000
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcC-CCc----cHHHHHHHcCCCeEEEecchHHHHHHHhhhcc
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDM-CLP----YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFT 161 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~-~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (492)
.......+..........+..+++. .+||+|++-. ... .+..++...++|+|.-+.........
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~------ 137 (415)
T cd03816 69 ---LPFLLFAPLKVLWQFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILA------ 137 (415)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHh------
Confidence 0111222222222333444445666 6899999753 221 23445667899998754432211100
Q ss_pred ccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhh-hccCCccEEEEcChhhhcHHHHHHHHhhcCCcE
Q 011142 162 SKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMG-AADTGTYGVIVNSFEELEPAYIKEYKKIRHDKV 240 (492)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 240 (492)
. +.... ..+..+...+. ...+.++.++..|...-+ .+... ...+.++
T Consensus 138 ----------~------~~~~~-------------~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~--~l~~~-~~~~~ki 185 (415)
T cd03816 138 ----------L------KLGEN-------------HPLVRLAKWYEKLFGRLADYNLCVTKAMKE--DLQQF-NNWKIRA 185 (415)
T ss_pred ----------c------ccCCC-------------CHHHHHHHHHHHHHhhcCCEeeecCHHHHH--HHHhh-hccCCCe
Confidence 0 00000 00001111111 123446666666643221 11110 0112333
Q ss_pred EEeccCCCCCcccchhhhcCCCCCcchhhhc----------ccc---cCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh
Q 011142 241 WCIGPVSLSNKEYSDKAQRGNKASVDEHQCL----------KWL---DSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA 307 (492)
Q Consensus 241 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~l---~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~ 307 (492)
..|..- ..... ............. .+. ...+++..++++.|.... ...+..+++|+..
T Consensus 186 ~vI~Ng--~~~~f-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~ 256 (415)
T cd03816 186 TVLYDR--PPEQF-----RPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVA 256 (415)
T ss_pred eecCCC--CHHHc-----eeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHH
Confidence 333210 00000 0000000000000 000 001233456666676553 3345556666654
Q ss_pred CC---------CCeE-EEEeCCCcchhhhhccchhhHHHHhcCCCeeee-cCCchh---hcccCCCcccccc-c----c-
Q 011142 308 SN---------RPFI-WVIREGETSKELKKWVVEDGFEERIKGRGLVIW-GWAPQV---LILSHPSIGGFLT-H----C- 367 (492)
Q Consensus 308 ~~---------~~vv-~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~-~~~pq~---~lL~~~~~~~~It-H----g- 367 (492)
+. .++. +.+|.+...+.+.+ ..++..-.|+.+. +|+|.. ++|+.+++ +|. + |
T Consensus 257 l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~------~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~ 328 (415)
T cd03816 257 YEKSAATGPKLPKLLCIITGKGPLKEKYLE------RIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGL 328 (415)
T ss_pred HHHhhcccccCCCEEEEEEecCccHHHHHH------HHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEcccccccc
Confidence 21 1233 33444433222211 1122223466654 588754 36888998 663 1 1
Q ss_pred C-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhcc---Ch
Q 011142 368 G-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDE---GK 443 (492)
Q Consensus 368 G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~---~~ 443 (492)
| -+.+.||+++|+|+|+... ......+ ++-+.|..+ . +.++++++|.++++| ++
T Consensus 329 ~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv--~---------------d~~~la~~i~~ll~~~~~~~ 386 (415)
T cd03816 329 DLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF--G---------------DSEELAEQLIDLLSNFPNRG 386 (415)
T ss_pred CCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE--C---------------CHHHHHHHHHHHHhcCCCHH
Confidence 2 3479999999999998643 3455556 566678765 1 478999999999998 65
Q ss_pred hhHHHHHHHHHHH
Q 011142 444 EGEERRNRAVKLG 456 (492)
Q Consensus 444 ~~~~~~~~a~~l~ 456 (492)
..+.+.+++++..
T Consensus 387 ~~~~m~~~~~~~~ 399 (415)
T cd03816 387 KLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHHHHHHhh
Confidence 5566666666555
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.15 E-value=5e-08 Score=96.08 Aligned_cols=333 Identities=16% Similarity=0.100 Sum_probs=173.4
Q ss_pred EEEEecCC---C-cCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 9 HFVLFPFL---A-QGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 9 ~il~~~~~---~-~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
||++++.. . .|+...+..|++.|.+.||+|++++......... ....... ....
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~------------~~~~~~~--------~~~~-- 58 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDE------------EEVGGIV--------VVRP-- 58 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCce------------eeecCcc--------eecC--
Confidence 45555532 2 7889999999999999999999999864222110 0000000 0000
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHH--HHHHHcCCCeEEEecchHHHHHHHhhhccc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTA--HIAGKFNIPRITFHGTCCFCLVCYNNLFTS 162 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 162 (492)
.. ................+..+++. .+||+|++........ ..+...++|++...........
T Consensus 59 ----~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------- 123 (374)
T cd03801 59 ----PP-LLRVRRLLLLLLLALRLRRLLRR--ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP-------- 123 (374)
T ss_pred ----Cc-ccccchhHHHHHHHHHHHHHhhh--cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc--------
Confidence 00 00000111112233445667777 7999999987765333 4788899999976544322100
Q ss_pred cccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcC---Cc
Q 011142 163 KVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRH---DK 239 (492)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~ 239 (492)
. ... .. ...............++.+++.+....+ .+....+ .+
T Consensus 124 -----------~----~~~------------~~--~~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~ 169 (374)
T cd03801 124 -----------G----NEL------------GL--LLKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEK 169 (374)
T ss_pred -----------c----cch------------hH--HHHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCc
Confidence 0 000 00 0001111122234456677766643322 3333333 25
Q ss_pred EEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCC---CCeEEE-
Q 011142 240 VWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASN---RPFIWV- 315 (492)
Q Consensus 240 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~---~~vv~~- 315 (492)
+..+.+-....... . .......-... ..+..+++.+|+.. ....+..+++++..+. .++-+.
T Consensus 170 ~~~i~~~~~~~~~~-~----------~~~~~~~~~~~-~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i 235 (374)
T cd03801 170 ITVIPNGVDTERFR-P----------APRAARRRLGI-PEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVI 235 (374)
T ss_pred EEEecCcccccccC-c----------cchHHHhhcCC-cCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEE
Confidence 56655332111100 0 00000011111 12334566677655 3334455566655432 123333
Q ss_pred EeCCCcchhhhhccchhhHHHHhcCCCeeeecCCch---hhcccCCCcccccc----ccCchhhHHHHhcCCCeeccCCc
Q 011142 316 IREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQ---VLILSHPSIGGFLT----HCGWNSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 316 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq---~~lL~~~~~~~~It----HgG~~s~~Eal~~GvP~v~~P~~ 388 (492)
+|.......... -..+.....++.+.+++++ ..++..+++ +|. -|..+++.||+++|+|+|+.+.
T Consensus 236 ~G~~~~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~- 307 (374)
T cd03801 236 VGDGPLREELEA-----LAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV- 307 (374)
T ss_pred EeCcHHHHHHHH-----HHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC-
Confidence 332221111110 0001123578999999974 347888888 663 3456799999999999998765
Q ss_pred cccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHH
Q 011142 389 GDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 389 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
......+ ++.+.|...+. .+.+++.++|.++++|++..+.+.++++
T Consensus 308 ---~~~~~~~-~~~~~g~~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 308 ---GGIPEVV-EDGETGLLVPP---------------GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred ---CChhHHh-cCCcceEEeCC---------------CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 4456666 46677776654 4589999999999998754444444444
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.13 E-value=8e-08 Score=94.46 Aligned_cols=327 Identities=14% Similarity=0.113 Sum_probs=169.7
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMV 88 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 88 (492)
||++++....|+...+..++++|.+.||+|++++....... . . ...++.++.++... .. .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~--~-~-----~~~~~~~~~~~~~~------~~---~--- 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE--E-L-----EALGVKVIPIPLDR------RG---I--- 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc--c-c-----ccCCceEEeccccc------cc---c---
Confidence 57888877888999999999999999999999998654332 0 0 11246666554210 00 0
Q ss_pred cccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccc
Q 011142 89 ASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFE 166 (492)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
.....+ .....+.++++. .+||+|++..... .+..+++..+.|.+...........
T Consensus 61 ---~~~~~~-----~~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 118 (359)
T cd03808 61 ---NPFKDL-----KALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------ 118 (359)
T ss_pred ---ChHhHH-----HHHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------
Confidence 001111 112245567777 7999999886544 2344455466666554332211100
Q ss_pred cCcCCCcccccCCCCCCccccccccCccccchhHHHHHH-hhhccCCccEEEEcChhhhcHHHHHHHHhhcC---CcEEE
Q 011142 167 SVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKK-MGAADTGTYGVIVNSFEELEPAYIKEYKKIRH---DKVWC 242 (492)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~~~~ 242 (492)
... .+ ....... .....+.++.++..+....+ .+..... .....
T Consensus 119 -----~~~----~~------------------~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~ 166 (359)
T cd03808 119 -----TSG----GL------------------KRRLYLLLERLALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVL 166 (359)
T ss_pred -----ccc----hh------------------HHHHHHHHHHHHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEE
Confidence 000 00 0000111 11123345677766643322 2222211 12233
Q ss_pred eccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEe
Q 011142 243 IGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIR 317 (492)
Q Consensus 243 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~ 317 (492)
+.|...+.... .+... . ..+++.+++..|+... ...+..+++++..+ +.++++. |
T Consensus 167 ~~~~~~~~~~~------------~~~~~-~----~~~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~~~l~i~-G 226 (359)
T cd03808 167 IPGSGVDLDRF------------SPSPE-P----IPEDDPVFLFVARLLK--DKGIDELLEAARILKAKGPNVRLLLV-G 226 (359)
T ss_pred ecCCCCChhhc------------Ccccc-c----cCCCCcEEEEEecccc--ccCHHHHHHHHHHHHhcCCCeEEEEE-c
Confidence 33322211100 00000 0 1233467777787653 22344445554432 3444444 3
Q ss_pred CCCcchhhhhccchhhHHHHhcCCCeeeecCCch-hhcccCCCccccccccC----chhhHHHHhcCCCeeccCCccccc
Q 011142 318 EGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQ-VLILSHPSIGGFLTHCG----WNSTIEGVSAGLPLLTWPLFGDQF 392 (492)
Q Consensus 318 ~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ~ 392 (492)
.......... ..........++.+.++..+ ..++..+++ +|.... .+++.||+++|+|+|+.+..
T Consensus 227 ~~~~~~~~~~----~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~---- 296 (359)
T cd03808 227 DGDEENPAAI----LEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP---- 296 (359)
T ss_pred CCCcchhhHH----HHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----
Confidence 3322111000 00011112457888777554 558888888 775432 57899999999999986543
Q ss_pred hhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 393 MNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 393 ~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
.....+ ++.+.|...+. -+.+++.++|.+++.|++..+.+.+++++.
T Consensus 297 ~~~~~i-~~~~~g~~~~~---------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 297 GCREAV-IDGVNGFLVPP---------------GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred Cchhhh-hcCcceEEECC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 344555 46667776654 468999999999999885555555555444
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.12 E-value=1.2e-07 Score=95.67 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=66.0
Q ss_pred CCCeeeecCCchhh---cccCCCcccccc---ccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAPQVL---ILSHPSIGGFLT---HCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..+|.+.+++|+.+ +|..+++ +|. +.|. +++.||+++|+|+|+.. .......+ +.-.-|+.++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCC--
Confidence 46899999999754 6778888 553 2232 48999999999999864 33455555 34445766654
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
-++++++++|.++++|++..+.+.+++++.
T Consensus 351 -------------~d~~~la~~i~~ll~~~~~~~~l~~~ar~~ 380 (396)
T cd03818 351 -------------FDPDALAAAVIELLDDPARRARLRRAARRT 380 (396)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 468999999999999875444555554443
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.11 E-value=6.8e-07 Score=90.75 Aligned_cols=146 Identities=13% Similarity=0.074 Sum_probs=87.6
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhC----CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchh---hc
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEAS----NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQV---LI 354 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~l 354 (492)
.+++..|+.. ....+..+++|+..+ +.+++ .+|.+...+.+.+ ..+.....|+.+.+|+|+. .+
T Consensus 230 ~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g~~~~~l~~------~~~~~~l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 230 KIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQGGGKARLEK------MAQCRGLPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred EEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCChhHHHHHH------HHHHcCCCceEEeCCCCHHHHHHH
Confidence 4555567765 334566667776653 23333 3343332221111 1122233589999999864 47
Q ss_pred ccCCCccccccccCc------hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCH
Q 011142 355 LSHPSIGGFLTHCGW------NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKR 428 (492)
Q Consensus 355 L~~~~~~~~ItHgG~------~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 428 (492)
++.+++-++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++. -+.
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~---------------~d~ 360 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP---------------ESV 360 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC---------------CCH
Confidence 888888444444332 246899999999999865431 122233 3 67887765 468
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHH
Q 011142 429 DDVRNAVEKLMDEGKEGEERRNRAVKLG 456 (492)
Q Consensus 429 ~~l~~ai~~ll~~~~~~~~~~~~a~~l~ 456 (492)
++++++|.++++|++..+.+.+++++..
T Consensus 361 ~~la~~i~~l~~~~~~~~~~~~~a~~~~ 388 (412)
T PRK10307 361 EALVAAIAALARQALLRPKLGTVAREYA 388 (412)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999988755555666665543
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.06 E-value=1.3e-07 Score=92.40 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=65.7
Q ss_pred CCCeeeecCCch-hhcccCCCccccccccC----chhhHHHHhcCCCeeccCCccccchhHHHHHHHhc-cceeecccCC
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFLTHCG----WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILK-IGVKVGVESP 413 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G-~G~~l~~~~~ 413 (492)
..++.+.++..+ ..++..+++ +|.-.. .+++.||+++|+|+|+.+..+.+ ..+. ..| .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEeCC---
Confidence 456777777443 568888888 665542 46899999999999987544332 3342 444 6776654
Q ss_pred cccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHH
Q 011142 414 MIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLG 456 (492)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~ 456 (492)
-+.+++.++|.++++|++..+.+.++++++.
T Consensus 304 ------------~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 304 ------------GDVEALAEALLRLMEDEELRKRMGANARESA 334 (348)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4679999999999999865555665554443
No 59
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.06 E-value=2e-07 Score=94.99 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=61.8
Q ss_pred hhcccCCCccccccc-----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccccccccccccc
Q 011142 352 VLILSHPSIGGFLTH-----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLM 426 (492)
Q Consensus 352 ~~lL~~~~~~~~ItH-----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~ 426 (492)
..+++.+++ ++.. +|..++.||+++|+|+|+-|...++......+ ++.|+++. . -
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~--~---------------~ 373 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQ--V---------------E 373 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEE--E---------------C
Confidence 457788887 4432 34445999999999999999888888777777 36665543 2 3
Q ss_pred CHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Q 011142 427 KRDDVRNAVEKLMDEGKEGEERRNRAVKLGQ 457 (492)
Q Consensus 427 ~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~ 457 (492)
+.+++.++|.++++|++..+.+.+++++..+
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAFLK 404 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5789999999999987555555555554443
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.05 E-value=3.1e-07 Score=90.75 Aligned_cols=316 Identities=18% Similarity=0.145 Sum_probs=162.1
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHH
Q 011142 17 AQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFD 96 (492)
Q Consensus 17 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (492)
..|+...+..+++.|.+.||+|++++........... ....... ...... ..........
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~----------~~~~~~~------~~~~~~-~~~~~~~~~~--- 72 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDL----------LKGRLVG------VERLPV-LLPVVPLLKG--- 72 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhh----------ccccccc------cccccc-Ccchhhcccc---
Confidence 4788899999999999999999999986433221110 0000000 000000 0000000000
Q ss_pred HHHHHhhhhHHHHHHHH--hcCCCCcEEEEcCCCc---cHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccccCcCC
Q 011142 97 FFTAADMLQEPVENFFA--QLKPRPNCIISDMCLP---YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFESVSSE 171 (492)
Q Consensus 97 ~~~~~~~~~~~l~~ll~--~~~~~pDlvI~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (492)
..........+..+++ . .+||+|++..... .+..+++..++|++..........
T Consensus 73 -~~~~~~~~~~~~~~l~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------------ 131 (377)
T cd03798 73 -PLLYLLAARALLKLLKLKR--FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL------------------ 131 (377)
T ss_pred -chhHHHHHHHHHHHHhccc--CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc------------------
Confidence 0111123344556666 5 7999999886543 334566778889887544321110
Q ss_pred CcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhh--cCCcEEEeccCCCC
Q 011142 172 SEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKI--RHDKVWCIGPVSLS 249 (492)
Q Consensus 172 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~~~~~~~vGp~~~~ 249 (492)
... ..............++.+++.+....+ .+... ...++..++.....
T Consensus 132 --------~~~----------------~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~ 182 (377)
T cd03798 132 --------LPR----------------KRLLRALLRRALRRADAVIAVSEALAD-----ELKALGIDPEKVTVIPNGVDT 182 (377)
T ss_pred --------cCc----------------hhhHHHHHHHHHhcCCeEEeCCHHHHH-----HHHHhcCCCCceEEcCCCcCc
Confidence 000 000011111233456677766633322 23322 23556666543221
Q ss_pred CcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC---CCCeEEEEeCCCcchhhh
Q 011142 250 NKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS---NRPFIWVIREGETSKELK 326 (492)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~---~~~vv~~~~~~~~~~~~~ 326 (492)
..-. . . ..... ..+... .+..+++..|+... ...+..+++++... ...+.+.+.+.......
T Consensus 183 ~~~~-~--------~-~~~~~-~~~~~~-~~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~- 247 (377)
T cd03798 183 ERFS-P--------A-DRAEA-RKLGLP-EDKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGPLREA- 247 (377)
T ss_pred ccCC-C--------c-chHHH-HhccCC-CCceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHH-
Confidence 1100 0 0 00000 111111 23356666777654 23344455555543 22444444443321110
Q ss_pred hccchhhHHHHh-cCCCeeeecCCchh---hcccCCCccccc----cccCchhhHHHHhcCCCeeccCCccccchhHHHH
Q 011142 327 KWVVEDGFEERI-KGRGLVIWGWAPQV---LILSHPSIGGFL----THCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLV 398 (492)
Q Consensus 327 ~~~lp~~~~~~~-~~~nv~~~~~~pq~---~lL~~~~~~~~I----tHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv 398 (492)
+- ...++. ...|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+.. .....+
T Consensus 248 ---~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~ 317 (377)
T cd03798 248 ---LE-ALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII 317 (377)
T ss_pred ---HH-HHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh
Confidence 10 111111 25689999999864 47888888 55 224567899999999999986543 345556
Q ss_pred HHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccCh
Q 011142 399 VQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGK 443 (492)
Q Consensus 399 ~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~ 443 (492)
+..+.|...+. -+.+++.++|.++++++.
T Consensus 318 -~~~~~g~~~~~---------------~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 318 -TDGENGLLVPP---------------GDPEALAEAILRLLADPW 346 (377)
T ss_pred -cCCcceeEECC---------------CCHHHHHHHHHHHhcCcH
Confidence 46666666644 578999999999999873
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.02 E-value=2.1e-07 Score=92.06 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=91.9
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCC-CCeEEEEeCCCcchhhhhccchhhHHHH-hcCCCeeeecCCchh---hccc
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEASN-RPFIWVIREGETSKELKKWVVEDGFEER-IKGRGLVIWGWAPQV---LILS 356 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~-~~vv~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq~---~lL~ 356 (492)
.+++..|+.. ....+..+++++.++. .++++.- ....... +. ...++ ....||.+.+|+|+. .+++
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G-~g~~~~~-----~~-~~~~~~~~~~~V~~~g~v~~~~~~~~~~ 262 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVG-EGPLEAE-----LE-ALAAALGLLDRVRFLGRLDDEEKAALLA 262 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEEe-CChhHHH-----HH-HHHHhcCCcceEEEcCCCCHHHHHHHHH
Confidence 4566677755 3345666788887776 4444432 2221111 11 11111 135789999999974 4788
Q ss_pred CCCcccccc---ccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHH-hccceeecccCCcccccccccccccCHHHH
Q 011142 357 HPSIGGFLT---HCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQI-LKIGVKVGVESPMIWGEEQKIGVLMKRDDV 431 (492)
Q Consensus 357 ~~~~~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~-~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (492)
.+++-++.+ +.|. .++.||+++|+|+|+....+. ...+ +. .+.|...+. -+.+++
T Consensus 263 ~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~----~~~i-~~~~~~g~~~~~---------------~d~~~~ 322 (357)
T cd03795 263 ACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTG----GSYV-NLHGVTGLVVPP---------------GDPAAL 322 (357)
T ss_pred hCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCc----hhHH-hhCCCceEEeCC---------------CCHHHH
Confidence 888833333 2343 479999999999998654433 3344 23 566766644 478999
Q ss_pred HHHHHHHhccChhhHHHHHHHHHHHH
Q 011142 432 RNAVEKLMDEGKEGEERRNRAVKLGQ 457 (492)
Q Consensus 432 ~~ai~~ll~~~~~~~~~~~~a~~l~~ 457 (492)
.++|.++++|++..+.+++++++..+
T Consensus 323 ~~~i~~l~~~~~~~~~~~~~~~~~~~ 348 (357)
T cd03795 323 AEAIRRLLEDPELRERLGEAARERAE 348 (357)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 99999999998666666666665543
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.01 E-value=5e-07 Score=89.73 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCCeeeecCCc-hh---hcccCCCcccccccc----CchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeeccc
Q 011142 340 GRGLVIWGWAP-QV---LILSHPSIGGFLTHC----GWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVE 411 (492)
Q Consensus 340 ~~nv~~~~~~p-q~---~lL~~~~~~~~ItHg----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 411 (492)
..++.+.+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+.... .....+ ++.+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeCC-
Confidence 45788889998 33 46888888 77743 357999999999999986543 333344 34445665543
Q ss_pred CCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 412 SPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
.+.+++.+++.++++|++..+.+.+++++.
T Consensus 315 --------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 344 (365)
T cd03825 315 --------------GDPEDLAEGIEWLLADPDEREELGEAAREL 344 (365)
T ss_pred --------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 468899999999998875444444444443
No 63
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.00 E-value=1.6e-07 Score=93.68 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=80.5
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch--
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ-- 351 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-- 351 (492)
+++|+++.+-.... .+.+..+++++.++ +.++++..+++... -..+.+.. ...|+.+.+.+++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPVV--------REPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChHH--------HHHHHHHhCCCCCEEEECCCChHH
Confidence 34666655432222 23466777777653 45566654332211 11111111 2357888776664
Q ss_pred -hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHH
Q 011142 352 -VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDD 430 (492)
Q Consensus 352 -~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (492)
..+++.+++ +|+..|.. +.||+++|+|+|.++-.++++. +. ..|.+..+ . -++++
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~-~~g~~~lv--~--------------~d~~~ 323 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TV-EAGTNKLV--G--------------TDKEN 323 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HH-hcCceEEe--C--------------CCHHH
Confidence 457788888 99977644 7999999999999875555442 32 45666544 2 36889
Q ss_pred HHHHHHHHhccC
Q 011142 431 VRNAVEKLMDEG 442 (492)
Q Consensus 431 l~~ai~~ll~~~ 442 (492)
|.+++.++++|+
T Consensus 324 i~~ai~~ll~~~ 335 (365)
T TIGR00236 324 ITKAAKRLLTDP 335 (365)
T ss_pred HHHHHHHHHhCh
Confidence 999999999887
No 64
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.96 E-value=9.8e-08 Score=92.98 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=95.1
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCC-eEEEEeCCCcchhhhhccchhhHHHHhc-CCCeeeecCCchhhcccC
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEASNRP-FIWVIREGETSKELKKWVVEDGFEERIK-GRGLVIWGWAPQVLILSH 357 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~-vv~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq~~lL~~ 357 (492)
+++|.+--||..+--...+..++++...+..+ .++.+......+. +.+... ...+.+.+ .-.+++..
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~---------i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGKD---------LKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHH---------HHHHHhcCCCcEEec--cHHHHHHh
Confidence 36899999998764345555566666654322 2333333222111 111111 11222222 33568999
Q ss_pred CCccccccccCchhhHHHHhcCCCeeccCCc--cccchhHHHHHH---Hhccceeecc----cC-CcccccccccccccC
Q 011142 358 PSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF--GDQFMNEKLVVQ---ILKIGVKVGV----ES-PMIWGEEQKIGVLMK 427 (492)
Q Consensus 358 ~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~--~DQ~~na~rv~e---~~G~G~~l~~----~~-~~~~~~~~~~~~~~~ 427 (492)
+++ +|+-.|..|+ |++..|+|||+ ++. .-|..||+++ . ..|+.-.+-. .+ +-++ .+...|
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEl-----lQ~~~t 305 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPEL-----LQEFVT 305 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchh-----hcccCC
Confidence 999 9999999999 99999999988 543 4688899999 5 4555533311 00 0000 013588
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 011142 428 RDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLV 476 (492)
Q Consensus 428 ~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 476 (492)
++.|.+++.+. +.+.+++...++++.+. ++++..+++.+
T Consensus 306 ~~~la~~i~~~-----~~~~~~~~~~~l~~~l~-----~~a~~~~A~~i 344 (347)
T PRK14089 306 VENLLKAYKEM-----DREKFFKKSKELREYLK-----HGSAKNVAKIL 344 (347)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHhc-----CCHHHHHHHHH
Confidence 99999999772 12255555555555542 34444554433
No 65
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.95 E-value=1.6e-06 Score=85.64 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=65.2
Q ss_pred CCCeeeecCCchh---hcccCCCcccccc----------ccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccce
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLT----------HCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGV 406 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~It----------HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~ 406 (492)
..|+.+.+++|+. .+++.+++ +|. -|..+++.||+++|+|+|+.+... ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 4689999999753 47788888 665 233478999999999999876432 23344 3444776
Q ss_pred eecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 407 KVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
.... -+.+++.++|.++++|++..+.+.+++++
T Consensus 308 ~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~a~~ 340 (355)
T cd03799 308 LVPP---------------GDPEALADAIERLLDDPELRREMGEAGRA 340 (355)
T ss_pred EeCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6644 47899999999999887544444444443
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.95 E-value=9.3e-07 Score=88.99 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=65.1
Q ss_pred CCCeeeecCCchh---hcccCCCccccccc---cC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLTH---CG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..|+.+.+++|+. .+|..+++ ++.. -| ..++.||+++|+|+|+.-.. .....+ ..-+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEeC---
Confidence 4689999999975 47888888 6632 22 35789999999999997433 334445 3545566542
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
.+.++++++|.++++|++..+.+.+++++.
T Consensus 349 -------------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 349 -------------PTPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred -------------CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 357899999999999885555555555543
No 67
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.94 E-value=1.2e-06 Score=88.71 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=67.9
Q ss_pred CCCeeeecCCchh---hcccCCCcccccc---c-cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLT---H-CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~It---H-gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..++.+.+++++. ++|+.+++ +|. + |...++.||+++|+|+|+.... .....+ ++-+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECCC--
Confidence 4679999999864 47889998 663 2 3345899999999999986543 344455 45566776654
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
-+.++++++|.++++|++..+.+++++++.
T Consensus 353 -------------~d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 353 -------------HDPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 468999999999998875555666665554
No 68
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.88 E-value=2.4e-06 Score=82.62 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=73.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
|||.+--. ..-|+.-+.++.++|.++||+|.+.+-... .+.+.+.. +++.+..+... + .
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~-----yg~~y~~iG~~--------g-~---- 59 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL-----YGIDYIVIGKH--------G-D---- 59 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH-----cCCCeEEEcCC--------C-C----
Confidence 56665542 334999999999999999999999887542 22333322 36777766411 1 0
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 88 VASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
.....+.... .....+.+++++ .+||++|+- .++.+..+|..+|+|+|.+.=+
T Consensus 60 ----~~~~Kl~~~~-~R~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 60 ----SLYGKLLESI-ERQYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred ----CHHHHHHHHH-HHHHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 1222233322 234455666677 799999975 4467788999999999997544
No 69
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.87 E-value=1.9e-06 Score=85.80 Aligned_cols=149 Identities=16% Similarity=0.230 Sum_probs=87.3
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCe-EEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch-----hhc
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEASNRPF-IWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ-----VLI 354 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~v-v~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-----~~l 354 (492)
.+++..|.........+..+++++......+ ++.+|.....+.+.+ ..+.. .+.++.+.+|+++ .+.
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~------~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKA------YSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHH------HHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 3456667654323345667777777653333 233444432222111 11111 2568999998754 224
Q ss_pred ccCCCccccccc----cCchhhHHHHhcCCCeeccC-CccccchhHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 355 LSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWP-LFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 355 L~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P-~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
++.+++ +|.. |-.+++.||+++|+|+|+.- ..+ ....+ ++-.-|..++. -+.+
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~---------------~d~~ 312 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP---------------GNID 312 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC---------------CCHH
Confidence 555666 5542 33579999999999999874 322 22334 35455766644 5789
Q ss_pred HHHHHHHHHhccCh--hhHHHHHHHHHHHHH
Q 011142 430 DVRNAVEKLMDEGK--EGEERRNRAVKLGQM 458 (492)
Q Consensus 430 ~l~~ai~~ll~~~~--~~~~~~~~a~~l~~~ 458 (492)
+++++|.++++|++ ..+.++++++++.+.
T Consensus 313 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 313 EFVGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 99999999999885 234455555555543
No 70
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.86 E-value=1.3e-06 Score=85.48 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=81.5
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch-h
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ-V 352 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~ 352 (492)
+..+++..|+... ...+..+++++..+ +.++++. |......... ...++. ...++.+.++.++ .
T Consensus 188 ~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~~~~~~------~~~~~~~~~~~v~~~g~~~~~~ 258 (353)
T cd03811 188 DGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVIL-GDGPLREELE------ALAKELGLADRVHFLGFQSNPY 258 (353)
T ss_pred CceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEE-cCCccHHHHH------HHHHhcCCCccEEEecccCCHH
Confidence 3356677777652 23344555555543 3444443 3332211111 111111 2457888888776 4
Q ss_pred hcccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCH
Q 011142 353 LILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKR 428 (492)
Q Consensus 353 ~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 428 (492)
.++..+++ +|.- |..+++.||+++|+|+|+.... .....+ ++.+.|...+.+ +.
T Consensus 259 ~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~---------------~~ 316 (353)
T cd03811 259 PYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPVG---------------DE 316 (353)
T ss_pred HHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECCC---------------CH
Confidence 58888888 6632 3356899999999999986443 556666 477788877553 56
Q ss_pred HHH---HHHHHHHhccChhhHHHHH
Q 011142 429 DDV---RNAVEKLMDEGKEGEERRN 450 (492)
Q Consensus 429 ~~l---~~ai~~ll~~~~~~~~~~~ 450 (492)
+.+ .+++.+++++++..+.+++
T Consensus 317 ~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 317 AALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHH
Confidence 666 5666666666643333333
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.85 E-value=4.4e-06 Score=82.66 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=65.5
Q ss_pred CCCeeeecCCch-hhcccCCCcccccc--ccC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcc
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFLT--HCG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMI 415 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~It--HgG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 415 (492)
..|+.+.+|.++ ..++..+++-++-+ +-| .+++.||+++|+|+|+.-. ......+ ++.+.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~----- 314 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPP----- 314 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCC-----
Confidence 457888888654 55888899833323 123 3699999999999998653 2344455 35557777754
Q ss_pred cccccccccccCHHHHHHHHHHHhc-cChhhHHHHHHHHHHHH
Q 011142 416 WGEEQKIGVLMKRDDVRNAVEKLMD-EGKEGEERRNRAVKLGQ 457 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~a~~l~~ 457 (492)
-+.+++.++|.+++. +++..+.++++|++..+
T Consensus 315 ----------~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 315 ----------GDAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred ----------CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 478899999965554 66555556666655544
No 72
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.85 E-value=1.1e-05 Score=79.55 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=61.0
Q ss_pred CCCeeeecCCch-hhcccCCCccccccccC----chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCc
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFLTHCG----WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPM 414 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 414 (492)
..++.+.++..+ ..+++.+++ +|.... .+++.||+++|+|+|+.. ...+...+ ++ .|..++.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEeCC----
Confidence 346666665544 558889998 776543 479999999999999854 44455555 35 5665644
Q ss_pred ccccccccccccCHHHHHHHHHHHhccChhhHHHHHHH
Q 011142 415 IWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRA 452 (492)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a 452 (492)
-+.+++.++|.++++|++..+.+.+++
T Consensus 317 -----------~~~~~l~~~i~~l~~~~~~~~~~~~~~ 343 (365)
T cd03807 317 -----------GDPEALAEAIEALLADPALRQALGEAA 343 (365)
T ss_pred -----------CCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 368899999999998864333333333
No 73
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.83 E-value=2.3e-06 Score=86.46 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=64.4
Q ss_pred CCCeeeecCCch-hhcccCCCccccc--cc--cCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCC
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFL--TH--CGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESP 413 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~I--tH--gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 413 (492)
..|+.+.+++++ ..+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. . +..|.|+.+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC----
Confidence 468999999987 458889998 66 32 354 46999999999999987543321 1 1345666553
Q ss_pred cccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 414 MIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
-+.++++++|.++++|++..+.+.+++++.
T Consensus 347 ------------~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 347 ------------ADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 368999999999999875444455554443
No 74
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.83 E-value=6.8e-06 Score=82.99 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCCeeeecCCchh---hcccCCCcccccc---ccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLT---HCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..++.+.+|+|+. .+++.+++ +|. +-|. .++.||+++|+|+|+-+..+ ....+ ++ |.+... .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~--~- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA--E- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec--C-
Confidence 4568888999853 47888888 653 2244 49999999999999977643 22333 23 433222 2
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccC
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
.+.+++.+++.+++++.
T Consensus 318 -------------~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 318 -------------PDVESIVRKLEEAISIL 334 (398)
T ss_pred -------------CCHHHHHHHHHHHHhCh
Confidence 36799999999999864
No 75
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.82 E-value=9.3e-06 Score=80.29 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=65.7
Q ss_pred CCCeeeecCCchhh---cccCCCcccccccc---C-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAPQVL---ILSHPSIGGFLTHC---G-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
.+|+.+.+|+++.+ ++..+++ +|.-. | .+++.||+++|+|+|+.+. ......+ .. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC--
Confidence 56899999999543 6888888 55432 2 4689999999999999753 3345555 35 77765533
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 331 --------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 --------------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred --------------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34899999999999875555566655555
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.80 E-value=3.1e-06 Score=83.84 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCeeeec-CCch---hhcccCCCcccccc--c----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeec
Q 011142 340 GRGLVIWG-WAPQ---VLILSHPSIGGFLT--H----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVG 409 (492)
Q Consensus 340 ~~nv~~~~-~~pq---~~lL~~~~~~~~It--H----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 409 (492)
..|+.+.+ |+|+ ..+++.+++ +|. + |-.+++.||+++|+|+|+.+..+ ...+ ...+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 46777765 4885 458888888 662 2 33468999999999999987654 3334 3566777665
Q ss_pred ccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 410 VESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
. -+.+++.+++.++++|++..+++.+++++.
T Consensus 318 ~---------------~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 348 (366)
T cd03822 318 P---------------GDPAALAEAIRRLLADPELAQALRARAREY 348 (366)
T ss_pred C---------------CCHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 5 358899999999999864444444444443
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.76 E-value=7.6e-06 Score=81.44 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=66.9
Q ss_pred CCCeeeecCCchh---hcccCCCccccccc----------cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccce
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLTH----------CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGV 406 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH----------gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~ 406 (492)
..++.+.+++|+. .+++.+++ +|.. |-.+++.||+++|+|+|+-+.. .+...+ ++.+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 4678898999864 46888888 6532 2357899999999999987654 356666 4667787
Q ss_pred eecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 407 KVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
.++. -+.+++.++|.++++|++..+.+.+++++
T Consensus 317 ~~~~---------------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 317 LVPE---------------GDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EECC---------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 7754 46789999999999886433344444433
No 78
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.75 E-value=3.8e-06 Score=83.69 Aligned_cols=134 Identities=18% Similarity=0.174 Sum_probs=85.3
Q ss_pred CCeEEEEeeCCCcCC-CHHhHHHHHHHHHhCCC-CeEEEEeCCCc-chhhhhccchhhHHHHhc--CCCeeeecCCch--
Q 011142 279 PKSVVYACLGSLCNL-IPSQMRELGLGLEASNR-PFIWVIREGET-SKELKKWVVEDGFEERIK--GRGLVIWGWAPQ-- 351 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~-~~~~~~~~~~a~~~~~~-~vv~~~~~~~~-~~~~~~~~lp~~~~~~~~--~~nv~~~~~~pq-- 351 (492)
+++.|++++|..... ..+.+..+++++..+.. ++++...+... ...+.+ ...+.. ..|+.+.++.+.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~------~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIRE------AGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHH------HHHhhccCCCCEEEECCcCHHH
Confidence 455778887776643 35567788888876533 34444433322 111111 111111 357877766554
Q ss_pred -hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHH
Q 011142 352 -VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDD 430 (492)
Q Consensus 352 -~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (492)
..++..+++ ||+..| |.+.|++++|+|+|.++.. |. +..+. +.|++..+ . -+.++
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~--~--------------~~~~~ 326 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLV--G--------------TDPEA 326 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEec--C--------------CCHHH
Confidence 346888999 999999 7778999999999998632 32 33453 66766544 2 24788
Q ss_pred HHHHHHHHhccC
Q 011142 431 VRNAVEKLMDEG 442 (492)
Q Consensus 431 l~~ai~~ll~~~ 442 (492)
|.++|.++++++
T Consensus 327 i~~~i~~ll~~~ 338 (363)
T cd03786 327 ILAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHHhcCc
Confidence 999999999876
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.74 E-value=1.2e-05 Score=79.59 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=60.3
Q ss_pred CCCeeeecCCch-hhcccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCc
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPM 414 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 414 (492)
..++.+.++..+ ..+++.+++ +|.- |-.+++.||+++|+|+|+....+ ....+ +. +.|..+..
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC----
Confidence 467888887555 558888888 6643 44579999999999999865543 34445 35 55544433
Q ss_pred ccccccccccccCHHHHHHHHHHHhccChhhHH
Q 011142 415 IWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEE 447 (492)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~ 447 (492)
-++++++++|.++++|++..+.
T Consensus 316 -----------~~~~~~a~~i~~l~~~~~~~~~ 337 (358)
T cd03812 316 -----------ESPEIWAEEILKLKSEDRRERS 337 (358)
T ss_pred -----------CCHHHHHHHHHHHHhCcchhhh
Confidence 3579999999999999854433
No 80
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=3.3e-05 Score=75.10 Aligned_cols=326 Identities=17% Similarity=0.204 Sum_probs=176.9
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEe-CCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVT-TPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~-~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
.+.+=.-+.|-++-..+|.++|.++ +..|++-+ ++...+.+++.. +..+...-+|.+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D-------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD-------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC--------------
Confidence 3444445689999999999999999 88888887 666666555542 222222222211
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCC-Cc-cHHHHHHHcCCCeEEEecchHHHHHHHhhhccccc
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMC-LP-YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKV 164 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~-~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 164 (492)
.. ..+..+++. ++||++|.=.. ++ ....-++..|+|.+++.-=.
T Consensus 111 ------~~-----------~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL--------------- 156 (419)
T COG1519 111 ------LP-----------IAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNARL--------------- 156 (419)
T ss_pred ------ch-----------HHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeee---------------
Confidence 11 112345666 89998884443 33 44667888999999851110
Q ss_pred cccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEec
Q 011142 165 FESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIG 244 (492)
Q Consensus 165 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vG 244 (492)
..+....+. ....+.+. ...+.++++.-+-.+-+ .+..-=-+++..+|
T Consensus 157 ----------------------S~rS~~~y~--k~~~~~~~---~~~~i~li~aQse~D~~-----Rf~~LGa~~v~v~G 204 (419)
T COG1519 157 ----------------------SDRSFARYA--KLKFLARL---LFKNIDLILAQSEEDAQ-----RFRSLGAKPVVVTG 204 (419)
T ss_pred ----------------------chhhhHHHH--HHHHHHHH---HHHhcceeeecCHHHHH-----HHHhcCCcceEEec
Confidence 000000000 01111122 22334555555522211 22221114467777
Q ss_pred cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC--CCCeEEEEeCCCcc
Q 011142 245 PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS--NRPFIWVIREGETS 322 (492)
Q Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~--~~~vv~~~~~~~~~ 322 (492)
-+-.+........ ..-..++..++.. ++ +.|..+| .....+.+-....++.+. +...||+-...+.
T Consensus 205 NlKfd~~~~~~~~-------~~~~~~r~~l~~~--r~-v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpER- 272 (419)
T COG1519 205 NLKFDIEPPPQLA-------AELAALRRQLGGH--RP-VWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPER- 272 (419)
T ss_pred ceeecCCCChhhH-------HHHHHHHHhcCCC--Cc-eEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChhh-
Confidence 6633322110000 0012344444432 43 5555555 333454455555555442 3445565433221
Q ss_pred hhhhhccchhhHHHHhcCCCeeeecCCch------------------hhcccCCCc----cccccccCchhhHHHHhcCC
Q 011142 323 KELKKWVVEDGFEERIKGRGLVIWGWAPQ------------------VLILSHPSI----GGFLTHCGWNSTIEGVSAGL 380 (492)
Q Consensus 323 ~~~~~~~lp~~~~~~~~~~nv~~~~~~pq------------------~~lL~~~~~----~~~ItHgG~~s~~Eal~~Gv 380 (492)
+ ....+-....++.+..|-.. ..+++-+++ +-++.+||+| ..|.+++|+
T Consensus 273 -------f-~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~ 343 (419)
T COG1519 273 -------F-KAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGT 343 (419)
T ss_pred -------H-HHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCC
Confidence 1 11111112233333332221 112222222 1156799999 789999999
Q ss_pred CeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Q 011142 381 PLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMAN 460 (492)
Q Consensus 381 P~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~ 460 (492)
|+|.=|...-|.+-++++ ++.|+|+.++. ++.|.+++..+++|++..+.|.+++.++-...+
T Consensus 344 pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~~-----------------~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 344 PVIFGPYTFNFSDIAERL-LQAGAGLQVED-----------------ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred CEEeCCccccHHHHHHHH-HhcCCeEEECC-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999 69999988732 677899999888887666677777766666555
No 81
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.72 E-value=2.9e-05 Score=79.50 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=62.2
Q ss_pred CCCeeeecCCchhh---cccCC----Ccccccccc---C-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceee
Q 011142 340 GRGLVIWGWAPQVL---ILSHP----SIGGFLTHC---G-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKV 408 (492)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~----~~~~~ItHg---G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l 408 (492)
..++.+.+++++.+ +++.+ ++ ||... | ..++.||+++|+|+|+.... .....+ ++-.-|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEe
Confidence 45687778877655 45544 55 77543 3 45999999999999987543 344445 354567766
Q ss_pred cccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHH
Q 011142 409 GVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
+. -++++++++|.++++|++..+.+.++++
T Consensus 389 ~~---------------~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 389 DV---------------LDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred CC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 55 4688999999999998744334444443
No 82
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.69 E-value=4.8e-05 Score=76.38 Aligned_cols=148 Identities=13% Similarity=0.120 Sum_probs=84.8
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhC--CCCeEEEEeCCCcchhhhhccchhhHHHHh---c--CCCeee-ecCCch---
Q 011142 283 VYACLGSLCNLIPSQMRELGLGLEAS--NRPFIWVIREGETSKELKKWVVEDGFEERI---K--GRGLVI-WGWAPQ--- 351 (492)
Q Consensus 283 Vyvs~Gs~~~~~~~~~~~~~~a~~~~--~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~---~--~~nv~~-~~~~pq--- 351 (492)
+++..|... ....+..+++++..+ +.++++..++..... +-+.+.+.. . ..++.. ..++++
T Consensus 203 ~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 203 YILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE------VAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred EEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH------HHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 455556654 334566777777764 455555544332211 111111111 1 224553 456775
Q ss_pred hhcccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccC
Q 011142 352 VLILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMK 427 (492)
Q Consensus 352 ~~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~ 427 (492)
..++..+++ +|.- |...++.||+++|+|+|+... ......+ +..+.|..++... .+..-.
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~---------~~~~~~ 338 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDN---------SDADGF 338 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCC---------Ccccch
Confidence 447888998 6642 224578999999999998654 3455556 4666787776541 000112
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 428 RDDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 428 ~~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
.+++.++|.++++|++..+.+.+++++
T Consensus 339 ~~~l~~~i~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 339 QAELAKAINILLADPELAKKMGIAGRK 365 (388)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 388999999999887544455555544
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.63 E-value=4.5e-05 Score=75.60 Aligned_cols=134 Identities=18% Similarity=0.221 Sum_probs=75.3
Q ss_pred EeeCCCcCCCHHhHHHHHHHHHhCC--CCeEEEEeCCCcchhhhhccchhhHHHH-hcCCCeeeecCCchh---hcccCC
Q 011142 285 ACLGSLCNLIPSQMRELGLGLEASN--RPFIWVIREGETSKELKKWVVEDGFEER-IKGRGLVIWGWAPQV---LILSHP 358 (492)
Q Consensus 285 vs~Gs~~~~~~~~~~~~~~a~~~~~--~~vv~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq~---~lL~~~ 358 (492)
+..|+.. ....+..++++++++. .++++. |........ -....++ ....+|.+.+++++. +++..+
T Consensus 197 ~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~iv-G~~~~~~~~-----~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 197 LLVGRIV--PENNIDDLIEAFSKSNSGKKLVIV-GNADHNTPY-----GKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEeccc--ccCCHHHHHHHHHhhccCceEEEE-cCCCCcchH-----HHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 4467755 3344666777777654 444433 333221111 1111111 125789999999875 466677
Q ss_pred Ccccccccc----Cc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHH
Q 011142 359 SIGGFLTHC----GW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRN 433 (492)
Q Consensus 359 ~~~~~ItHg----G~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (492)
++ ++-+. |. +++.||+++|+|+|+....+ +...+ +. -|...+.. +.+++
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~-----------------~~l~~ 322 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG-----------------DDLAS 322 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc-----------------hHHHH
Confidence 77 55443 22 57999999999999876543 22223 23 23333222 12999
Q ss_pred HHHHHhccChhhHHHHHHH
Q 011142 434 AVEKLMDEGKEGEERRNRA 452 (492)
Q Consensus 434 ai~~ll~~~~~~~~~~~~a 452 (492)
+|.++++|++..+.+.+++
T Consensus 323 ~i~~l~~~~~~~~~~~~~~ 341 (363)
T cd04955 323 LLEELEADPEEVSAMAKAA 341 (363)
T ss_pred HHHHHHhCHHHHHHHHHHH
Confidence 9999998864333333333
No 84
>PLN02275 transferase, transferring glycosyl groups
Probab=98.62 E-value=0.00016 Score=72.29 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=52.6
Q ss_pred CCCeeeec-CCchhh---cccCCCcccccc-c-----cC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceee
Q 011142 340 GRGLVIWG-WAPQVL---ILSHPSIGGFLT-H-----CG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKV 408 (492)
Q Consensus 340 ~~nv~~~~-~~pq~~---lL~~~~~~~~It-H-----gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l 408 (492)
-+|+.+.. |+|+.+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ..+...+ ++-+.|..+
T Consensus 285 l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv 357 (371)
T PLN02275 285 LRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLF 357 (371)
T ss_pred CCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEE
Confidence 35666645 788755 5899999 773 1 12 3579999999999999743 3355556 466678765
Q ss_pred cccCCcccccccccccccCHHHHHHHHHHHh
Q 011142 409 GVESPMIWGEEQKIGVLMKRDDVRNAVEKLM 439 (492)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll 439 (492)
+ +.++++++|.++|
T Consensus 358 ~-----------------~~~~la~~i~~l~ 371 (371)
T PLN02275 358 S-----------------SSSELADQLLELL 371 (371)
T ss_pred C-----------------CHHHHHHHHHHhC
Confidence 2 2678888888775
No 85
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.62 E-value=3.5e-05 Score=75.55 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=75.6
Q ss_pred EEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHh--cCCCeeeecCCchh---hcccCC
Q 011142 284 YACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERI--KGRGLVIWGWAPQV---LILSHP 358 (492)
Q Consensus 284 yvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~pq~---~lL~~~ 358 (492)
.+..|... ..+....+++++++.+.++++.-.+. ..... ....... ...++.+.+++++. .+++.+
T Consensus 174 i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~-~~~~~------~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 174 LLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS-DPDYF------YREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC-CHHHH------HHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 34456653 33345667788888887766654332 21111 1111111 24789999999975 468888
Q ss_pred Ccccccc--ccC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHH
Q 011142 359 SIGGFLT--HCG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAV 435 (492)
Q Consensus 359 ~~~~~It--HgG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai 435 (492)
++-++-+ +-| ..++.||+++|+|+|+.... .+...+ ++-.-|... . ..+++.++|
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~--~---------------~~~~l~~~l 302 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLV--D---------------SVEELAAAV 302 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEe--C---------------CHHHHHHHH
Confidence 8833323 234 35899999999999987653 233333 232245443 1 278899999
Q ss_pred HHHhcc
Q 011142 436 EKLMDE 441 (492)
Q Consensus 436 ~~ll~~ 441 (492)
.++++.
T Consensus 303 ~~l~~~ 308 (335)
T cd03802 303 ARADRL 308 (335)
T ss_pred HHHhcc
Confidence 988754
No 86
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.56 E-value=0.00012 Score=73.93 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=86.1
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhC---CCCeEE-EEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCchh---
Q 011142 281 SVVYACLGSLCNLIPSQMRELGLGLEAS---NRPFIW-VIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQV--- 352 (492)
Q Consensus 281 ~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~---~~~vv~-~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~--- 352 (492)
+..+++.|... ....+..++++++.+ +.++-+ .+|.+...+.++. ..++. ...++.+.+|+|+.
T Consensus 222 ~~~il~vGrl~--~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~------~~~~~~l~~~V~~~G~~~~~el~ 293 (406)
T PRK15427 222 PLEIISVARLT--EKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRT------LIEQYQLEDVVEMPGFKPSHEVK 293 (406)
T ss_pred CeEEEEEeCcc--hhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHH------HHHHcCCCCeEEEeCCCCHHHHH
Confidence 34555667665 333455566666543 223333 3343332221111 11111 24679999999975
Q ss_pred hcccCCCccccccc---------cCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccccccccc
Q 011142 353 LILSHPSIGGFLTH---------CGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKI 422 (492)
Q Consensus 353 ~lL~~~~~~~~ItH---------gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~ 422 (492)
+++..+++ ||.- -|. ++++||+++|+|+|+.... .....+ ++-..|+.++.
T Consensus 294 ~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~lv~~------------ 354 (406)
T PRK15427 294 AMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGWLVPE------------ 354 (406)
T ss_pred HHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceEEeCC------------
Confidence 47888888 6642 344 5789999999999997543 233444 34456776654
Q ss_pred ccccCHHHHHHHHHHHhc-cChhhHHHHHHHHH
Q 011142 423 GVLMKRDDVRNAVEKLMD-EGKEGEERRNRAVK 454 (492)
Q Consensus 423 ~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~a~~ 454 (492)
-+.++++++|.++++ |++..+.+.+++++
T Consensus 355 ---~d~~~la~ai~~l~~~d~~~~~~~~~~ar~ 384 (406)
T PRK15427 355 ---NDAQALAQRLAAFSQLDTDELAPVVKRARE 384 (406)
T ss_pred ---CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 468999999999998 77444444444443
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.55 E-value=0.00014 Score=72.68 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=61.6
Q ss_pred CCeeeecCCch-hhcccCCCccccc--cc--cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcc
Q 011142 341 RGLVIWGWAPQ-VLILSHPSIGGFL--TH--CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMI 415 (492)
Q Consensus 341 ~nv~~~~~~pq-~~lL~~~~~~~~I--tH--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 415 (492)
.++.+.++..+ ..+++.+++ +| ++ |-.+++.||+++|+|+|+.... .+...+ ++-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeCC-----
Confidence 45666555544 568889998 66 33 3356999999999999997643 344455 35456776654
Q ss_pred cccccccccccCHHHHHHHHHHHhccChhhHHHHHHHH
Q 011142 416 WGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
-+.++++++|.++++|++..+.+.++++
T Consensus 323 ----------~d~~~la~~i~~l~~~~~~~~~~~~~a~ 350 (374)
T TIGR03088 323 ----------GDAVALARALQPYVSDPAARRAHGAAGR 350 (374)
T ss_pred ----------CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4688999999999987643333444443
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.53 E-value=1.8e-05 Score=78.19 Aligned_cols=91 Identities=14% Similarity=0.231 Sum_probs=62.0
Q ss_pred cCCCeeeecCCchh---hcccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeeccc
Q 011142 339 KGRGLVIWGWAPQV---LILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVE 411 (492)
Q Consensus 339 ~~~nv~~~~~~pq~---~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 411 (492)
...|+.+.+|+|+. .++..+++ +|.- |..+++.||+++|+|+|+....+ ....+ ++. |..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~~~--~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-GDA--ALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-cCc--eeeeCC-
Confidence 36789999999875 47888887 5533 33468999999999999865422 22223 232 433433
Q ss_pred CCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHH
Q 011142 412 SPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
-+.+++.++|.++++|++..+.+.++++
T Consensus 321 --------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 321 --------------LDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred --------------CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4688999999999998855555555554
No 89
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.48 E-value=8.3e-05 Score=75.25 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=70.7
Q ss_pred eCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCcc
Q 011142 287 LGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIG 361 (492)
Q Consensus 287 ~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~ 361 (492)
.|-.. ..+.+..+++++..+ +.+ +..+|.++....++. +- ++..-....+.++.+..+++...++
T Consensus 234 vGRL~--~eK~~~~Li~a~~~l~~~~~~~~-l~ivGdGp~~~~L~~--~a----~~l~l~~~vf~G~~~~~~~~~~~Dv- 303 (462)
T PLN02846 234 IGKMV--WSKGYKELLKLLHKHQKELSGLE-VDLYGSGEDSDEVKA--AA----EKLELDVRVYPGRDHADPLFHDYKV- 303 (462)
T ss_pred EecCc--ccCCHHHHHHHHHHHHhhCCCeE-EEEECCCccHHHHHH--HH----HhcCCcEEEECCCCCHHHHHHhCCE-
Confidence 45544 344567777777642 223 445566654333222 11 1111112234456566678888888
Q ss_pred ccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHH
Q 011142 362 GFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEK 437 (492)
Q Consensus 362 ~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ 437 (492)
||.- +=.+++.||+++|+|+|+.-... + ..+ .+-+-|... -+.+++.+++.+
T Consensus 304 -Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~-----------------~~~~~~a~ai~~ 359 (462)
T PLN02846 304 -FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY-----------------DDGKGFVRATLK 359 (462)
T ss_pred -EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec-----------------CCHHHHHHHHHH
Confidence 8876 33578999999999999986443 2 333 233333222 247789999999
Q ss_pred HhccC
Q 011142 438 LMDEG 442 (492)
Q Consensus 438 ll~~~ 442 (492)
+|+++
T Consensus 360 ~l~~~ 364 (462)
T PLN02846 360 ALAEE 364 (462)
T ss_pred HHccC
Confidence 99754
No 90
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.48 E-value=0.00027 Score=77.35 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=92.0
Q ss_pred hhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCC-----CCeEEEEeCCCcchhhhhc--cchhhHH---HHh
Q 011142 269 QCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASN-----RPFIWVIREGETSKELKKW--VVEDGFE---ERI 338 (492)
Q Consensus 269 ~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~-----~~vv~~~~~~~~~~~~~~~--~lp~~~~---~~~ 338 (492)
.+..|+.. +++++ ++..|... +.+.+..+++|+..+. ..+.+.++.......+... ..-..+. .+.
T Consensus 469 ~l~r~~~~-pdkpv-IL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 469 EIMRFFTN-PRKPM-ILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred HHHhhccc-CCCcE-EEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 45566643 34443 34456654 3445667778776542 2444555543321110000 0001111 111
Q ss_pred -cCCCeeeecCCchhh---cccCC----Cccccccc---cC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccce
Q 011142 339 -KGRGLVIWGWAPQVL---ILSHP----SIGGFLTH---CG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGV 406 (492)
Q Consensus 339 -~~~nv~~~~~~pq~~---lL~~~----~~~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~ 406 (492)
...+|.+.+|+++.+ ++..+ ++ ||.- =| ..++.||+++|+|+|+....+ ....+ +.-.-|+
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGl 617 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGL 617 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEE
Confidence 145688888888654 55554 35 7764 34 358999999999999986432 33334 3444577
Q ss_pred eecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 407 KVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
.+++ -++++|+++|.++++|++..+.+.+++.+.
T Consensus 618 LVdP---------------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~ 651 (1050)
T TIGR02468 618 LVDP---------------HDQQAIADALLKLVADKQLWAECRQNGLKN 651 (1050)
T ss_pred EECC---------------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 6655 468899999999999885555566555544
No 91
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.47 E-value=0.00014 Score=71.91 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=76.4
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch-hhc
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ-VLI 354 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~~l 354 (492)
.+++..|+... ...+..+++++..+ +.++++.- .+....... ...++. ...|+.+.++..+ ..+
T Consensus 189 ~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G-~g~~~~~~~------~~~~~~~~~~~v~~~g~~~~~~~~ 259 (360)
T cd04951 189 FVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAG-DGPLRATLE------RLIKALGLSNRVKLLGLRDDIAAY 259 (360)
T ss_pred EEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEc-CCCcHHHHH------HHHHhcCCCCcEEEecccccHHHH
Confidence 56666776543 33444555555432 45555543 332211111 111111 2457888887765 568
Q ss_pred ccCCCcccccccc----CchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHH
Q 011142 355 LSHPSIGGFLTHC----GWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDD 430 (492)
Q Consensus 355 L~~~~~~~~ItHg----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (492)
+..+++ +|.-. ..+++.||+++|+|+|+. |...+...+ ++ .|..+.. -+.++
T Consensus 260 ~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~---------------~~~~~ 315 (360)
T cd04951 260 YNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI---------------SDPEA 315 (360)
T ss_pred HHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC---------------CCHHH
Confidence 888888 65532 256899999999999974 445555566 35 3444433 47889
Q ss_pred HHHHHHHHhccC
Q 011142 431 VRNAVEKLMDEG 442 (492)
Q Consensus 431 l~~ai~~ll~~~ 442 (492)
+.++|.++++++
T Consensus 316 ~~~~i~~ll~~~ 327 (360)
T cd04951 316 LANKIDEILKMS 327 (360)
T ss_pred HHHHHHHHHhCC
Confidence 999999998543
No 92
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.42 E-value=4.4e-05 Score=75.59 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=83.6
Q ss_pred EEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchh---hcccCCCc
Q 011142 284 YACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQV---LILSHPSI 360 (492)
Q Consensus 284 yvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~lL~~~~~ 360 (492)
++..|+.. ....+..++++++.++.++++.- ..... +.+.+ ....||.+.+++|+. .+++.+++
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG-~g~~~---------~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIG-DGPEL---------DRLRA-KAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEE-CChhH---------HHHHh-hcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 34456655 33456778888888887766553 33221 11111 236799999999974 47888998
Q ss_pred cccccccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHh
Q 011142 361 GGFLTHCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLM 439 (492)
Q Consensus 361 ~~~ItHgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll 439 (492)
-++-+.-|. .++.||+++|+|+|+....+ ....+ ++-+.|..++. -+.++++++|.+++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~---------------~~~~~la~~i~~l~ 324 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE---------------QTVESLAAAVERFE 324 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC---------------CCHHHHHHHHHHHH
Confidence 222234444 46789999999999986533 33345 35567877755 46888999999999
Q ss_pred ccC
Q 011142 440 DEG 442 (492)
Q Consensus 440 ~~~ 442 (492)
+|+
T Consensus 325 ~~~ 327 (351)
T cd03804 325 KNE 327 (351)
T ss_pred hCc
Confidence 887
No 93
>PLN02949 transferase, transferring glycosyl groups
Probab=98.41 E-value=0.001 Score=68.17 Aligned_cols=114 Identities=14% Similarity=0.021 Sum_probs=65.7
Q ss_pred CCCeeeecCCchhh---cccCCCcccccc---ccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHH-hc-cceeecc
Q 011142 340 GRGLVIWGWAPQVL---ILSHPSIGGFLT---HCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQI-LK-IGVKVGV 410 (492)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~-~G-~G~~l~~ 410 (492)
..+|.+.+++|+.+ +|+.+++ +|+ +-|. .++.||+++|+|+|+....+-- ...+.+. .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 56799989998544 6888887 663 2333 3799999999999998654310 0111000 01 12211
Q ss_pred cCCcccccccccccccCHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 011142 411 ESPMIWGEEQKIGVLMKRDDVRNAVEKLMDE-GKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (492)
-+.++++++|.+++++ ++..+++.+++++ ..++ -|...-.+++.+.+...
T Consensus 407 ---------------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~-------~~~~-FS~e~~~~~~~~~i~~l 457 (463)
T PLN02949 407 ---------------TTVEEYADAILEVLRMRETERLEIAAAARK-------RANR-FSEQRFNEDFKDAIRPI 457 (463)
T ss_pred ---------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------HHHH-cCHHHHHHHHHHHHHHH
Confidence 2678999999999985 3333344444443 3222 44344444555544443
No 94
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.37 E-value=0.00033 Score=72.16 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=105.7
Q ss_pred cCCcEEEec-cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH--hC--CC
Q 011142 236 RHDKVWCIG-PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLE--AS--NR 310 (492)
Q Consensus 236 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~--~~--~~ 310 (492)
.+-++.||| |+....+ . .....+..+.+.-.+++++|-+--||..+--...+..++++.+ .+ +.
T Consensus 379 ~gv~v~yVGHPL~d~i~-~----------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l 447 (608)
T PRK01021 379 SPLRTVYLGHPLVETIS-S----------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTH 447 (608)
T ss_pred cCCCeEEECCcHHhhcc-c----------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCe
Confidence 468899999 7644321 0 0022333344433346678999999977644555666777776 43 34
Q ss_pred CeEEEEeCCCcchhhhhccchhhHHHHhcCCC---eeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccC-
Q 011142 311 PFIWVIREGETSKELKKWVVEDGFEERIKGRG---LVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWP- 386 (492)
Q Consensus 311 ~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~n---v~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P- 386 (492)
+|+.........+ .+.+.....+ +.+..--...++++.|++ .+.-.|-. +.|+...|+|||++=
T Consensus 448 ~fvvp~a~~~~~~---------~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGTa-TLEaAL~g~PmVV~YK 515 (608)
T PRK01021 448 QLLVSSANPKYDH---------LILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGTI-VLETALNQTPTIVTCQ 515 (608)
T ss_pred EEEEecCchhhHH---------HHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCHH-HHHHHHhCCCEEEEEe
Confidence 5655433222111 1111111111 122110012578889998 88777754 789999999998852
Q ss_pred CccccchhHHHHHHHh----------ccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHH
Q 011142 387 LFGDQFMNEKLVVQIL----------KIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLG 456 (492)
Q Consensus 387 ~~~DQ~~na~rv~e~~----------G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~ 456 (492)
...=-..-++++. +. =+|..+-++- .+ .+...|++.|++++ ++|.|+++.+++++..++++
T Consensus 516 ~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPEl---lq----gQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 516 LRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPEF---IG----GKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLY 586 (608)
T ss_pred cCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchhh---cC----CcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHH
Confidence 1111223445554 31 0222222221 00 01258899999997 88888866666777777776
Q ss_pred HHH
Q 011142 457 QMA 459 (492)
Q Consensus 457 ~~~ 459 (492)
+.+
T Consensus 587 ~~L 589 (608)
T PRK01021 587 QAM 589 (608)
T ss_pred HHh
Confidence 664
No 95
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.36 E-value=0.00011 Score=72.24 Aligned_cols=201 Identities=15% Similarity=0.107 Sum_probs=108.9
Q ss_pred cCCcEEEec-cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh-----CC
Q 011142 236 RHDKVWCIG-PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA-----SN 309 (492)
Q Consensus 236 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~-----~~ 309 (492)
.+-++.||| |+........ .+....+.+ -.+++++|-+--||...--...+..++++++. .+
T Consensus 151 ~g~~~~~VGHPl~d~~~~~~-----------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~ 218 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKPEP-----------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPD 218 (373)
T ss_pred cCCCeEEECCcchhhhccCC-----------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 457899999 7654322110 122333333 22367789999999776334445556666553 35
Q ss_pred CCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeec-CCchhhcccCCCccccccccCchhhHHHHhcCCCeeccC-C
Q 011142 310 RPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWG-WAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWP-L 387 (492)
Q Consensus 310 ~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~-~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P-~ 387 (492)
.++++............+ ... ....++.+.- .-.-.+++..+++ .+.-.|- .+.|+...|+|||++= .
T Consensus 219 l~fvvp~a~~~~~~~i~~------~~~-~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 219 LQFVVPVAPEVHEELIEE------ILA-EYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKV 288 (373)
T ss_pred eEEEEecCCHHHHHHHHH------HHH-hhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcC
Confidence 566666544322110100 000 1122333221 1234568888888 6666664 5789999999998762 1
Q ss_pred ccccchhHHHHHHHhcc-c-------eeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Q 011142 388 FGDQFMNEKLVVQILKI-G-------VKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMA 459 (492)
Q Consensus 388 ~~DQ~~na~rv~e~~G~-G-------~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~ 459 (492)
..=-..-|++++ +... | ..+-++ =.+...|++.|.+++.++++|+ +.++......+.+
T Consensus 289 ~~lt~~iak~lv-k~~~isL~Niia~~~v~PE---------liQ~~~~~~~i~~~~~~ll~~~----~~~~~~~~~~~~~ 354 (373)
T PF02684_consen 289 SPLTYFIAKRLV-KVKYISLPNIIAGREVVPE---------LIQEDATPENIAAELLELLENP----EKRKKQKELFREI 354 (373)
T ss_pred cHHHHHHHHHhh-cCCEeechhhhcCCCcchh---------hhcccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHH
Confidence 112233455553 3221 1 111111 0123589999999999999988 4455555555555
Q ss_pred HHHHhcCCchHHH
Q 011142 460 NMAVQEGGSSHLN 472 (492)
Q Consensus 460 ~~~~~~gg~~~~~ 472 (492)
++....|.++..+
T Consensus 355 ~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 355 RQLLGPGASSRAA 367 (373)
T ss_pred HHhhhhccCCHHH
Confidence 5555556554443
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.36 E-value=2.8e-06 Score=83.54 Aligned_cols=254 Identities=15% Similarity=0.143 Sum_probs=126.2
Q ss_pred HHHHHhhhhHHHHHHHHhcCCCCcEEEE--cCCCc-cHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccccCcCCCc
Q 011142 97 FFTAADMLQEPVENFFAQLKPRPNCIIS--DMCLP-YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFESVSSESE 173 (492)
Q Consensus 97 ~~~~~~~~~~~l~~ll~~~~~~pDlvI~--D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (492)
...........+.+++++ .+||+||+ |-+.. ++..+|..++||++-+-... .. .
T Consensus 48 ~~~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGl-Rs-------------------~- 104 (346)
T PF02350_consen 48 MAKSTGLAIIELADVLER--EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGL-RS-------------------G- 104 (346)
T ss_dssp HHHHHHHHHHHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-------------------------S-
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCC-Cc-------------------c-
Confidence 344445566777888888 79999995 43433 77889999999977542220 00 0
Q ss_pred ccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhh-c-CCcEEEeccCCCCCc
Q 011142 174 YLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKI-R-HDKVWCIGPVSLSNK 251 (492)
Q Consensus 174 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~-~~~~~~vGp~~~~~~ 251 (492)
...-+. .++..++..... ++..+..+-.. .....+. . +.+++.+|....+.-
T Consensus 105 -d~~~g~------------------~de~~R~~i~~l--a~lhf~~t~~~-----~~~L~~~G~~~~rI~~vG~~~~D~l 158 (346)
T PF02350_consen 105 -DRTEGM------------------PDEINRHAIDKL--AHLHFAPTEEA-----RERLLQEGEPPERIFVVGNPGIDAL 158 (346)
T ss_dssp --TTSST------------------THHHHHHHHHHH---SEEEESSHHH-----HHHHHHTT--GGGEEE---HHHHHH
T ss_pred -ccCCCC------------------chhhhhhhhhhh--hhhhccCCHHH-----HHHHHhcCCCCCeEEEEChHHHHHH
Confidence 000011 123333333222 34444555222 2222221 1 367888885433221
Q ss_pred ccchhhhcCCCCCcchhhh--cccccCCCCCeEEEEeeCCCcCCC-H---HhHHHHHHHHHhC-CCCeEEEEeCCCcchh
Q 011142 252 EYSDKAQRGNKASVDEHQC--LKWLDSKAPKSVVYACLGSLCNLI-P---SQMRELGLGLEAS-NRPFIWVIREGETSKE 324 (492)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l--~~~l~~~~~~~~Vyvs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~vv~~~~~~~~~~~ 324 (492)
..... . ..+.. ..++.. .+++.+++++=...+.. + ..+..++.++.+. +.++||.+...+...
T Consensus 159 ~~~~~--~------~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~- 228 (346)
T PF02350_consen 159 LQNKE--E------IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS- 228 (346)
T ss_dssp HHHHH--T------TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH-
T ss_pred HHhHH--H------HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH-
Confidence 11000 0 00111 122122 46778999985544444 3 3444556666655 788999986443211
Q ss_pred hhhccchhhHHHHhc-CCCeeeecCCch---hhcccCCCccccccccCchhhH-HHHhcCCCeeccCCccccchhHHHHH
Q 011142 325 LKKWVVEDGFEERIK-GRGLVIWGWAPQ---VLILSHPSIGGFLTHCGWNSTI-EGVSAGLPLLTWPLFGDQFMNEKLVV 399 (492)
Q Consensus 325 ~~~~~lp~~~~~~~~-~~nv~~~~~~pq---~~lL~~~~~~~~ItHgG~~s~~-Eal~~GvP~v~~P~~~DQ~~na~rv~ 399 (492)
..+.+... -+|+++.+-+++ ..+|+++++ +||..| +++ ||.+.|+|+|.+ .++..|-
T Consensus 229 -------~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i------R~~geRq- 290 (346)
T PF02350_consen 229 -------DIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI------RDSGERQ- 290 (346)
T ss_dssp -------HHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC------SSS-S-H-
T ss_pred -------HHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe------cCCCCCH-
Confidence 11112111 148888776664 568889999 999999 666 999999999999 3333443
Q ss_pred HHhccceeecccCCcccccccccccccCHHHHHHHHHHHhcc
Q 011142 400 QILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDE 441 (492)
Q Consensus 400 e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~ 441 (492)
|-...|-.+-.. .++++|.+++.+++++
T Consensus 291 e~r~~~~nvlv~--------------~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 291 EGRERGSNVLVG--------------TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHTTSEEEET--------------SSHHHHHHHHHHHHH-
T ss_pred HHHhhcceEEeC--------------CCHHHHHHHHHHHHhC
Confidence 233333222233 6899999999999975
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00094 Score=71.30 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCeeeecCCch-hhcccCCCcccccc---ccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCc
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFLT---HCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPM 414 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 414 (492)
.++|.+.+|.++ ..+|+.+++ ||. +.|. +++.||+++|+|+|+.... .....| ++-.-|+.++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 467888899876 458888888 664 4554 7899999999999997643 344455 354468877665
Q ss_pred ccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 415 IWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
..+.+++.+++.+++.+......+++++++
T Consensus 643 ----------d~~~~~La~aL~~ll~~l~~~~~l~~~ar~ 672 (694)
T PRK15179 643 ----------TVTAPDVAEALARIHDMCAADPGIARKAAD 672 (694)
T ss_pred ----------CCChHHHHHHHHHHHhChhccHHHHHHHHH
Confidence 256677888887777543222355554443
No 98
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.34 E-value=0.00013 Score=72.52 Aligned_cols=131 Identities=17% Similarity=0.280 Sum_probs=80.1
Q ss_pred CeEEEEeeCCCc--C-CCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhc-CCCeeeecCCc---hh
Q 011142 280 KSVVYACLGSLC--N-LIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIK-GRGLVIWGWAP---QV 352 (492)
Q Consensus 280 ~~~Vyvs~Gs~~--~-~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~p---q~ 352 (492)
++.|++++=... . ...+.+..+++++.+.+.++++.+......... +-+.+.+... .+|+.+.+-++ ..
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~----i~~~i~~~~~~~~~v~l~~~l~~~~~l 276 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRI----INEAIEEYVNEHPNFRLFKSLGQERYL 276 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchH----HHHHHHHHhcCCCCEEEECCCChHHHH
Confidence 457778875433 2 446778899999988776666665433211000 1111111111 45788876555 46
Q ss_pred hcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHH
Q 011142 353 LILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVR 432 (492)
Q Consensus 353 ~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (492)
.+++++++ +||.++.+- .||.+.|+|+|.+- +-+ ... +.|..+. ... .++++|.
T Consensus 277 ~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~-~~g~nvl-~vg--------------~~~~~I~ 330 (365)
T TIGR03568 277 SLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGR-LRADSVI-DVD--------------PDKEEIV 330 (365)
T ss_pred HHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhh-hhcCeEE-EeC--------------CCHHHHH
Confidence 68999999 999885555 99999999999773 211 111 2333322 122 5689999
Q ss_pred HHHHHHhc
Q 011142 433 NAVEKLMD 440 (492)
Q Consensus 433 ~ai~~ll~ 440 (492)
+++.++++
T Consensus 331 ~a~~~~~~ 338 (365)
T TIGR03568 331 KAIEKLLD 338 (365)
T ss_pred HHHHHHhC
Confidence 99999653
No 99
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.31 E-value=0.00066 Score=67.82 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=58.3
Q ss_pred CCCeeeecCC--ch---hhcccCCCcccccccc---C-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecc
Q 011142 340 GRGLVIWGWA--PQ---VLILSHPSIGGFLTHC---G-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGV 410 (492)
Q Consensus 340 ~~nv~~~~~~--pq---~~lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~ 410 (492)
..++.+..+. ++ ..+++.+++ |+.-. | ..++.||+++|+|+|+.... .....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4567777776 33 357888888 77533 2 35999999999999987543 233344 3445565432
Q ss_pred cCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 411 ESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
+.++++.+|.++++|++..+.+.+++++
T Consensus 323 ----------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~ 350 (372)
T cd03792 323 ----------------TVEEAAVRILYLLRDPELRRKMGANARE 350 (372)
T ss_pred ----------------CcHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 2456778999999876444444444444
No 100
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.29 E-value=0.0022 Score=68.73 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCeeeecCC-ch---hhcccC----CCccccccc---cC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhcccee
Q 011142 340 GRGLVIWGWA-PQ---VLILSH----PSIGGFLTH---CG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVK 407 (492)
Q Consensus 340 ~~nv~~~~~~-pq---~~lL~~----~~~~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~ 407 (492)
..+|.+.++. +. ..++.. +++ ||.- =| ..++.||+++|+|+|+.-. ......| ++-.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 3567766654 32 234432 234 6642 23 3589999999999998643 3455566 35556877
Q ss_pred ecccCCcccccccccccccCHHHHHHHHHHHh----ccChhhHHHHHHH
Q 011142 408 VGVESPMIWGEEQKIGVLMKRDDVRNAVEKLM----DEGKEGEERRNRA 452 (492)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll----~~~~~~~~~~~~a 452 (492)
+++ -++++++++|.+++ +|++..+.+.+++
T Consensus 691 Vdp---------------~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a 724 (784)
T TIGR02470 691 IDP---------------YHGEEAAEKIVDFFEKCDEDPSYWQKISQGG 724 (784)
T ss_pred eCC---------------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 766 46788899988876 5664444444443
No 101
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.28 E-value=0.00059 Score=69.34 Aligned_cols=81 Identities=22% Similarity=0.067 Sum_probs=54.2
Q ss_pred CCCeeeecCCchh---hcccCCCccccccc---cC-chhhHHHHhcCCCeeccCCccccchhHHHHHH---Hhccceeec
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLTH---CG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQ---ILKIGVKVG 409 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e---~~G~G~~l~ 409 (492)
..+|.+.+++|+. .+|..+++ +|+- -| ..++.||+++|+|+|+.-..+. ..-+.+ .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp----~~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP----LLDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC----chheeeccCCCCceEEe-
Confidence 4689999999864 47888888 6532 12 2488999999999998653321 111112 23345432
Q ss_pred ccCCcccccccccccccCHHHHHHHHHHHhccCh
Q 011142 410 VESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGK 443 (492)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~ 443 (492)
-++++++++|.+++++++
T Consensus 377 ----------------~d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ----------------STAEEYAEAIEKILSLSE 394 (419)
T ss_pred ----------------CCHHHHHHHHHHHHhCCH
Confidence 268899999999998763
No 102
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=0.00045 Score=66.64 Aligned_cols=214 Identities=17% Similarity=0.159 Sum_probs=115.8
Q ss_pred hcHHHHHHHHhhcCCcEEEec-cCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHH
Q 011142 224 LEPAYIKEYKKIRHDKVWCIG-PVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELG 302 (492)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~ 302 (492)
+|+++++.. +-..+||| |+....+... .++...+-+.-..+++++.+--||...--...+..+.
T Consensus 146 FE~~~y~k~----g~~~~yVGHpl~d~i~~~~-----------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~ 210 (381)
T COG0763 146 FEPAFYDKF----GLPCTYVGHPLADEIPLLP-----------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFV 210 (381)
T ss_pred CCHHHHHhc----CCCeEEeCChhhhhccccc-----------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHH
Confidence 455544433 33489999 6644332111 2344445554444667899999998763333344455
Q ss_pred HHHHh-----CCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCe-eeecCC-ch--hhcccCCCccccccccCchhhH
Q 011142 303 LGLEA-----SNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGL-VIWGWA-PQ--VLILSHPSIGGFLTHCGWNSTI 373 (492)
Q Consensus 303 ~a~~~-----~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv-~~~~~~-pq--~~lL~~~~~~~~ItHgG~~s~~ 373 (492)
+++.. .+.+|+..+...... .........+. ...-++ ++ ..++..+++ .+.-+|-. +.
T Consensus 211 ~a~~~l~~~~~~~~~vlp~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tL 277 (381)
T COG0763 211 QAAQELKARYPDLKFVLPLVNAKYR----------RIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TL 277 (381)
T ss_pred HHHHHHHhhCCCceEEEecCcHHHH----------HHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HH
Confidence 55543 356788776443211 11111111111 011122 22 236677777 77777754 68
Q ss_pred HHHhcCCCeeccCCccc--cchhHHHHHHHhc--------cceeecccCCcccccccccccccCHHHHHHHHHHHhccCh
Q 011142 374 EGVSAGLPLLTWPLFGD--QFMNEKLVVQILK--------IGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGK 443 (492)
Q Consensus 374 Eal~~GvP~v~~P~~~D--Q~~na~rv~e~~G--------~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~ 443 (492)
|+..+|+|||+.= -.+ -..-+++.. ... +|..+-++- .+...+++.|.+++..++.|++
T Consensus 278 E~aL~g~P~Vv~Y-k~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEl---------iq~~~~pe~la~~l~~ll~~~~ 346 (381)
T COG0763 278 EAALAGTPMVVAY-KVKPITYFIAKRLV-KLPYVSLPNILAGREIVPEL---------IQEDCTPENLARALEELLLNGD 346 (381)
T ss_pred HHHHhCCCEEEEE-eccHHHHHHHHHhc-cCCcccchHHhcCCccchHH---------HhhhcCHHHHHHHHHHHhcChH
Confidence 9999999999861 111 111222332 222 121111210 1235889999999999999986
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011142 444 EGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 444 ~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (492)
..+.+++...+|++.++ ++++++.+++.+++.+
T Consensus 347 ~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 347 RREALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred hHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 55667777777666655 4446666666666544
No 103
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.13 E-value=7.4e-06 Score=67.23 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=77.6
Q ss_pred EEEEeeCCCcCCCHHhHH-----HHHHHHHhCCC-CeEEEEeCCCcchhhhhccchhhHHHHhcCCC--eeeecCCch-h
Q 011142 282 VVYACLGSLCNLIPSQMR-----ELGLGLEASNR-PFIWVIREGETSKELKKWVVEDGFEERIKGRG--LVIWGWAPQ-V 352 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~-----~~~~a~~~~~~-~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~n--v~~~~~~pq-~ 352 (492)
.+||+-||... .+.+. ..+..+.+.++ +.+.++|.+... .++....-..... +...+|-|- .
T Consensus 5 ~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 5 TVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred EEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHH
Confidence 69999999873 11222 24455556664 677888776321 2332221111223 344567786 5
Q ss_pred hcccCCCccccccccCchhhHHHHhcCCCeeccC----CccccchhHHHHHHHhcccee
Q 011142 353 LILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWP----LFGDQFMNEKLVVQILKIGVK 407 (492)
Q Consensus 353 ~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P----~~~DQ~~na~rv~e~~G~G~~ 407 (492)
+..+.+++ +|+|+|.||++|.|..|+|.|+++ +...|-.-|..++ +.|.=..
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~ 131 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYY 131 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEE
Confidence 66777898 999999999999999999999999 4568999999995 7765443
No 104
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=0.003 Score=61.20 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=82.8
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHh----C-CCCeEEEEeCCCcchhhhhccchhhHHHHhc-CCCeeee---cCCc
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEA----S-NRPFIWVIREGETSKELKKWVVEDGFEERIK-GRGLVIW---GWAP 350 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~----~-~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~---~~~p 350 (492)
+..+++|+=-..+.. +.+..+++++.+ . ++.||..+.... ..++ + . + .... ..|+.+. +|.+
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~---~v~e--~-~-~-~~L~~~~~v~li~pl~~~~ 274 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP---RVRE--L-V-L-KRLKNVERVKLIDPLGYLD 274 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh---hhhH--H-H-H-HHhCCCCcEEEeCCcchHH
Confidence 447888765544444 556666665543 3 455555554332 1111 1 1 1 2222 3356653 4667
Q ss_pred hhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHH
Q 011142 351 QVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDD 430 (492)
Q Consensus 351 q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (492)
...++.++-+ ++|-.|. -.-||-..|+|++++=..-+++. ++ +.|.-..+ . .+.+.
T Consensus 275 f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v--~agt~~lv--g--------------~~~~~ 330 (383)
T COG0381 275 FHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV--EAGTNILV--G--------------TDEEN 330 (383)
T ss_pred HHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce--ecCceEEe--C--------------ccHHH
Confidence 7889999988 9998774 46789999999999987778885 22 34433333 2 56799
Q ss_pred HHHHHHHHhccC
Q 011142 431 VRNAVEKLMDEG 442 (492)
Q Consensus 431 l~~ai~~ll~~~ 442 (492)
|.+++.++++++
T Consensus 331 i~~~~~~ll~~~ 342 (383)
T COG0381 331 ILDAATELLEDE 342 (383)
T ss_pred HHHHHHHHhhCh
Confidence 999999999987
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.03 E-value=0.0029 Score=65.55 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=71.4
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHh---CCCCeEEEEeCCCcchhhhhccchhhHHHHh--cCCCeeeecCCch---hh
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEA---SNRPFIWVIREGETSKELKKWVVEDGFEERI--KGRGLVIWGWAPQ---VL 353 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~---~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~pq---~~ 353 (492)
.+++..|.... ...+..+++++.. .+.++++.-.+... +.+.+.+.. .+.|+.+....++ ..
T Consensus 297 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 297 PLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVILGSGDPE--------YEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEEecCCHH--------HHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 34555666553 2334555555543 34555554333211 111222111 1457665333333 24
Q ss_pred cccCCCccccccc---cCc-hhhHHHHhcCCCeeccCCcc--ccchhHHHHHHHhccceeecccCCcccccccccccccC
Q 011142 354 ILSHPSIGGFLTH---CGW-NSTIEGVSAGLPLLTWPLFG--DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMK 427 (492)
Q Consensus 354 lL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~--DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~ 427 (492)
+++.+++ ++.- -|. .+.+||+++|+|+|+....+ |--.+...- ...|-|..++. -+
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~---------------~~ 428 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG---------------YN 428 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC---------------CC
Confidence 7788888 6643 122 47899999999999876543 222111111 13346777765 46
Q ss_pred HHHHHHHHHHHhcc
Q 011142 428 RDDVRNAVEKLMDE 441 (492)
Q Consensus 428 ~~~l~~ai~~ll~~ 441 (492)
.+++.++|.+++++
T Consensus 429 ~~~l~~~i~~~l~~ 442 (476)
T cd03791 429 ADALLAALRRALAL 442 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999998863
No 106
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.02 E-value=0.0011 Score=66.17 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=70.8
Q ss_pred CCCeeeecCCch-hhcccCCCccccccc--cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccc
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFLTH--CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIW 416 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~ItH--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 416 (492)
..++.+.++.++ ..++..+++=++.++ |...++.||+++|+|+|+..... .....+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 457888777776 458889998444444 33468999999999999865331 233445 35567776654
Q ss_pred ccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Q 011142 417 GEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQM 458 (492)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~ 458 (492)
-+.++++++|.++++|++..+.+.+++.+..+.
T Consensus 330 ---------~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 362 (372)
T cd04949 330 ---------GDIEALAEAIIELLNDPKLLQKFSEAAYENAER 362 (372)
T ss_pred ---------CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 478999999999999886666677777666444
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.96 E-value=0.0057 Score=63.30 Aligned_cols=79 Identities=10% Similarity=-0.025 Sum_probs=52.3
Q ss_pred CCCeeeecCCchh---hcccCCCccccccc---cCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHh------ccce
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLTH---CGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQIL------KIGV 406 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~------G~G~ 406 (492)
+.++.+....+.. .+++.+++ +|.- -|. .+.+||+++|+|+|+....+ ....+ ++. +-|.
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~ 417 (473)
T TIGR02095 345 PGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGF 417 (473)
T ss_pred CCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceE
Confidence 4566655444542 47888888 7643 243 37899999999999876433 22222 232 6677
Q ss_pred eecccCCcccccccccccccCHHHHHHHHHHHhc
Q 011142 407 KVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMD 440 (492)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~ 440 (492)
.++. -+++++.++|.++++
T Consensus 418 l~~~---------------~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 418 LFEE---------------YDPGALLAALSRALR 436 (473)
T ss_pred EeCC---------------CCHHHHHHHHHHHHH
Confidence 6655 468899999999886
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.96 E-value=0.015 Score=58.17 Aligned_cols=79 Identities=19% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCCeeeecCCchhh---cccCCCccccc------cccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeec
Q 011142 340 GRGLVIWGWAPQVL---ILSHPSIGGFL------THCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVG 409 (492)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~I------tHgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 409 (492)
.+||.+.+++|+.+ +++++++.++- +.++. +.++|++++|+|+|+.++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 47999999998544 68888883332 23333 458999999999998763 2222 2333 33332
Q ss_pred ccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 410 VESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
. -+.+++.++|.+++.++
T Consensus 324 ~---------------~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A---------------DDPEEFVAAIEKALLED 341 (373)
T ss_pred C---------------CCHHHHHHHHHHHHhcC
Confidence 2 36899999999987654
No 109
>PLN02316 synthase/transferase
Probab=97.95 E-value=0.025 Score=62.61 Aligned_cols=113 Identities=10% Similarity=-0.006 Sum_probs=66.6
Q ss_pred CCeeeecCCchh---hcccCCCccccccc---cC-chhhHHHHhcCCCeeccCCcc--ccchhH----HHHHHH---hcc
Q 011142 341 RGLVIWGWAPQV---LILSHPSIGGFLTH---CG-WNSTIEGVSAGLPLLTWPLFG--DQFMNE----KLVVQI---LKI 404 (492)
Q Consensus 341 ~nv~~~~~~pq~---~lL~~~~~~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~~--DQ~~na----~rv~e~---~G~ 404 (492)
.++.+....+.. .+++.+++ |+.- =| ..+.+||+++|+|.|+....+ |..... .+- +. -+-
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~-~~~g~~~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERA-QAQGLEPN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccc-cccccCCc
Confidence 456655444442 57888888 7743 22 358999999999888765433 221111 000 01 134
Q ss_pred ceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 011142 405 GVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVI 477 (492)
Q Consensus 405 G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (492)
|...+. .+++.|..+|.+++.+ +.+....+++..+..+...-|-...+++.+
T Consensus 977 Gflf~~---------------~d~~aLa~AL~raL~~------~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 977 GFSFDG---------------ADAAGVDYALNRAISA------WYDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred eEEeCC---------------CCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 665544 5788999999999963 334445566666666555555444444443
No 110
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.93 E-value=0.0059 Score=63.00 Aligned_cols=131 Identities=12% Similarity=0.161 Sum_probs=71.7
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHh---CCCCeEEEEeCCCcchhhhhccchhhHHHHh--cCCCeee-ecCCch--hh
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEA---SNRPFIWVIREGETSKELKKWVVEDGFEERI--KGRGLVI-WGWAPQ--VL 353 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~---~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~-~~~~pq--~~ 353 (492)
.+++..|.... ...+..+++|+.+ .+.++++. |..... +.+.+.... .+.++.+ ..|-.+ ..
T Consensus 283 ~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lviv-G~g~~~-------~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 283 PLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLL-GTGDPE-------LEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred cEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEE-ecCcHH-------HHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 35555666553 3345555666553 35666665 332211 111121111 1345443 455333 24
Q ss_pred cccCCCccccccc---cCc-hhhHHHHhcCCCeeccCCcc--ccchhHHHHHHHhccceeecccCCcccccccccccccC
Q 011142 354 ILSHPSIGGFLTH---CGW-NSTIEGVSAGLPLLTWPLFG--DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMK 427 (492)
Q Consensus 354 lL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~--DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~ 427 (492)
+++.+++ ||.- -|. .+.+||+++|+|+|+....+ |.-.+...-. ..+-|+.++. -+
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~-~~~~G~lv~~---------------~d 414 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPED-GEATGFVFDD---------------FN 414 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCC-CCCceEEeCC---------------CC
Confidence 7888888 7743 344 48899999999999875432 2111111111 2266777755 46
Q ss_pred HHHHHHHHHHHhc
Q 011142 428 RDDVRNAVEKLMD 440 (492)
Q Consensus 428 ~~~l~~ai~~ll~ 440 (492)
++++.++|.++++
T Consensus 415 ~~~la~~i~~~l~ 427 (466)
T PRK00654 415 AEDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999886
No 111
>PLN00142 sucrose synthase
Probab=97.87 E-value=0.0037 Score=67.17 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=45.1
Q ss_pred cccc---cCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHH-
Q 011142 363 FLTH---CGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEK- 437 (492)
Q Consensus 363 ~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~- 437 (492)
||.- -|. .++.||+++|+|+|+... ......| ++-.-|..+++. +.++++++|.+
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV~P~---------------D~eaLA~aI~~l 729 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHIDPY---------------HGDEAANKIADF 729 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeCCC---------------CHHHHHHHHHHH
Confidence 6643 444 489999999999998654 3455555 354467777663 56777777765
Q ss_pred ---HhccChhhHHHHHHH
Q 011142 438 ---LMDEGKEGEERRNRA 452 (492)
Q Consensus 438 ---ll~~~~~~~~~~~~a 452 (492)
+++|++..+.+.+++
T Consensus 730 LekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 730 FEKCKEDPSYWNKISDAG 747 (815)
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 456765444454444
No 112
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.83 E-value=0.00021 Score=71.75 Aligned_cols=150 Identities=15% Similarity=0.245 Sum_probs=84.7
Q ss_pred CCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHH-hcCCCeeeecCCchhh---
Q 011142 278 APKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEER-IKGRGLVIWGWAPQVL--- 353 (492)
Q Consensus 278 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq~~--- 353 (492)
+++.++|.||.+.....++.+....+.+++.+.-.+|........+. . +-..+.+. +.+..+++.++.|+.+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~--~--l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEA--R--LRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHH--H--HHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHH--H--HHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 35569999999999999999999999999999889998765533211 1 21222221 2356688877777544
Q ss_pred cccCCCccccc---cccCchhhHHHHhcCCCeeccCCcc-ccchhHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 354 ILSHPSIGGFL---THCGWNSTIEGVSAGLPLLTWPLFG-DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 354 lL~~~~~~~~I---tHgG~~s~~Eal~~GvP~v~~P~~~-DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
.+..+++ ++ ..+|++|++|||+.|||+|.+|.-. =...-+..+ ..+|+...+ ..+.+
T Consensus 358 ~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElI----------------A~s~~ 418 (468)
T PF13844_consen 358 RYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELI----------------ADSEE 418 (468)
T ss_dssp HGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-----------------SSHH
T ss_pred HhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhc----------------CCCHH
Confidence 3445665 54 5679999999999999999999543 334455566 477777544 24566
Q ss_pred HHHHHHHHHhccChhhHHHHH
Q 011142 430 DVRNAVEKLMDEGKEGEERRN 450 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~~ 450 (492)
+-.+.--++-+|+++.+.+|+
T Consensus 419 eYv~~Av~La~D~~~l~~lR~ 439 (468)
T PF13844_consen 419 EYVEIAVRLATDPERLRALRA 439 (468)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 655555567777643333333
No 113
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.78 E-value=0.00013 Score=64.16 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=68.7
Q ss_pred CCCeeeecCCc--h-hhcccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAP--Q-VLILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~p--q-~~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..++.+..+++ + ..++..+++ +|+. |...++.||+++|+|+|+. |...+...+ ...+.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC--
Confidence 46888889988 3 558888888 8776 5667999999999999975 355556666 46666777755
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
-+.+++.++|.+++++++..+.+.+++++
T Consensus 143 -------------~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 -------------NDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp -------------TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 48999999999999987655566666554
No 114
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.77 E-value=0.00059 Score=69.06 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=87.6
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeCCCc-chhhhhccchhhHHHHhcCCCeeeecCCchhh--
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIREGET-SKELKKWVVEDGFEERIKGRGLVIWGWAPQVL-- 353 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~-~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~-- 353 (492)
..++++|.... ...+..+++++..+ +.++.|.+-+... ...++. + ..+.....++.+.+|+++.+
T Consensus 231 ~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~--~---~~~~~~~~~V~f~G~v~~~e~~ 303 (407)
T cd04946 231 LRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKE--L---AESKPENISVNFTGELSNSEVY 303 (407)
T ss_pred EEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHH--H---HHhcCCCceEEEecCCChHHHH
Confidence 45566677654 22345555555532 2467776544332 221111 0 00111245688899999764
Q ss_pred -cccCCCccccccccC----chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCH
Q 011142 354 -ILSHPSIGGFLTHCG----WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKR 428 (492)
Q Consensus 354 -lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 428 (492)
++..+++.+||...- -++++||+++|+|+|+... ......+ ++.+-|..+... .+.
T Consensus 304 ~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~~--------------~~~ 364 (407)
T cd04946 304 KLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSKD--------------PTP 364 (407)
T ss_pred HHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCCC--------------CCH
Confidence 444443333765442 4689999999999998653 3345555 355578777554 578
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 429 DDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 429 ~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
++++++|.++++|++..+.++++|++.
T Consensus 365 ~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 365 NELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999999875444444444443
No 115
>PRK14098 glycogen synthase; Provisional
Probab=97.77 E-value=0.0099 Score=61.55 Aligned_cols=80 Identities=8% Similarity=0.011 Sum_probs=53.3
Q ss_pred CCCeeeecCCchh---hcccCCCcccccccc---Cc-hhhHHHHhcCCCeeccCCcc--ccchhHHHHHHHhccceeecc
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLTHC---GW-NSTIEGVSAGLPLLTWPLFG--DQFMNEKLVVQILKIGVKVGV 410 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItHg---G~-~s~~Eal~~GvP~v~~P~~~--DQ~~na~rv~e~~G~G~~l~~ 410 (492)
+.++.+..+.+.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |...+ .. ++-+-|...+.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC
Confidence 4678887777763 57888888 76432 22 37889999999888876543 22111 11 12355666644
Q ss_pred cCCcccccccccccccCHHHHHHHHHHHh
Q 011142 411 ESPMIWGEEQKIGVLMKRDDVRNAVEKLM 439 (492)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~ll 439 (492)
-+++++.++|.+++
T Consensus 436 ---------------~d~~~la~ai~~~l 449 (489)
T PRK14098 436 ---------------YTPEALVAKLGEAL 449 (489)
T ss_pred ---------------CCHHHHHHHHHHHH
Confidence 56899999999876
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.60 E-value=0.027 Score=58.33 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCCeeeecCCchhhcccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHh-----c-cceeec
Q 011142 340 GRGLVIWGWAPQVLILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQIL-----K-IGVKVG 409 (492)
Q Consensus 340 ~~nv~~~~~~pq~~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~-----G-~G~~l~ 409 (492)
..||.+.+...-.++++.+++ +|.- |--+++.||+++|+|+|+- |.......+ ++. | .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 468888775555678888888 6533 3346899999999999995 334444445 342 2 566665
Q ss_pred ccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHH
Q 011142 410 VESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
. .+.++++++|.++++|++..+.+.++++
T Consensus 426 ~---------------~d~~~la~ai~~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 426 P---------------ADPEALARAILRLLKDPELRRAMGEAGR 454 (475)
T ss_pred C---------------CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4 4789999999999998754444544444
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.55 E-value=0.022 Score=59.13 Aligned_cols=150 Identities=11% Similarity=0.149 Sum_probs=86.0
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhC---CCCeE-EEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCchhhccc
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEAS---NRPFI-WVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQVLILS 356 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~---~~~vv-~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~~lL~ 356 (492)
.++++.|... ....+..+++|+..+ ...+- ..+|.+.....+++ ..++. ...+|.+.++.+...+++
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~------~i~~~~l~~~V~f~G~~~~~~~~~ 391 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQK------IINENQAQDYIHLKGHRNLSEVYK 391 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHH------HHHHcCCCCeEEEcCCCCHHHHHH
Confidence 4555667765 334566666766532 11232 33454432222211 11111 145688888888788999
Q ss_pred CCCcccccc---ccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccC----H
Q 011142 357 HPSIGGFLT---HCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMK----R 428 (492)
Q Consensus 357 ~~~~~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~----~ 428 (492)
.+++ +|. .-|. .+++||+++|+|+|+.-.. ..+...+ +.-.-|..++... ..-+ .
T Consensus 392 ~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI-~~g~nG~lv~~~~-----------~~~d~~~~~ 454 (500)
T TIGR02918 392 DYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFI-EDNKNGYLIPIDE-----------EEDDEDQII 454 (500)
T ss_pred hCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHc-cCCCCEEEEeCCc-----------cccchhHHH
Confidence 9988 765 3343 6899999999999997542 1233444 3444566665310 0112 7
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHHH
Q 011142 429 DDVRNAVEKLMDEGKEGEERRNRAVKLGQ 457 (492)
Q Consensus 429 ~~l~~ai~~ll~~~~~~~~~~~~a~~l~~ 457 (492)
++++++|.++++ ++..+.+.+++.+.++
T Consensus 455 ~~la~~I~~ll~-~~~~~~~~~~a~~~a~ 482 (500)
T TIGR02918 455 TALAEKIVEYFN-SNDIDAFHEYSYQIAE 482 (500)
T ss_pred HHHHHHHHHHhC-hHHHHHHHHHHHHHHH
Confidence 789999999995 4334455556555433
No 118
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.54 E-value=0.049 Score=57.31 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=69.2
Q ss_pred CHHhHHHHHHHHHhC-----CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchh-hcccCCCccccccc-
Q 011142 294 IPSQMRELGLGLEAS-----NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQV-LILSHPSIGGFLTH- 366 (492)
Q Consensus 294 ~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~-~lL~~~~~~~~ItH- 366 (492)
....+..+++++..+ +.+ +..+|.+.....+.. + ..+ ..-++.+.++.++. ++++.+++ ||.-
T Consensus 557 ~EKGld~LLeAla~L~~~~pnvr-LvIVGDGP~reeLe~--l----a~e-LgL~V~FLG~~dd~~~lyasaDV--FVlPS 626 (794)
T PLN02501 557 WAKGYRELIDLLAKHKNELDGFN-LDVFGNGEDAHEVQR--A----AKR-LDLNLNFLKGRDHADDSLHGYKV--FINPS 626 (794)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeE-EEEEcCCccHHHHHH--H----HHH-cCCEEEecCCCCCHHHHHHhCCE--EEECC
Confidence 344567777777642 223 334455543322211 0 011 12246666777765 48888888 7753
Q ss_pred --cC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 367 --CG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 367 --gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
=| .+++.||+++|+|+|+.-..+... + ..|.+..+. -+.+++.++|.++|+|+
T Consensus 627 ~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V--~~g~nGll~----------------~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 627 ISDVLCTATAEALAMGKFVVCADHPSNEF-----F--RSFPNCLTY----------------KTSEDFVAKVKEALANE 682 (794)
T ss_pred CcccchHHHHHHHHcCCCEEEecCCCCce-----E--eecCCeEec----------------CCHHHHHHHHHHHHhCc
Confidence 23 468999999999999987654321 2 123232221 35889999999999876
No 119
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.49 E-value=0.15 Score=51.62 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=58.2
Q ss_pred eeCCCcCCCHHhHHHHHHHHHhCCCCe-EEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCc-h---hhcccCCCc
Q 011142 286 CLGSLCNLIPSQMRELGLGLEASNRPF-IWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAP-Q---VLILSHPSI 360 (492)
Q Consensus 286 s~Gs~~~~~~~~~~~~~~a~~~~~~~v-v~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p-q---~~lL~~~~~ 360 (492)
..|.........+..+++|+..++.++ ++.+|..... . ..++...++.. + ..+++.+++
T Consensus 246 ~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~-------~---------~~~v~~~g~~~~~~~l~~~y~~aDv 309 (405)
T PRK10125 246 VVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF-------T---------AGNVVNHGFETDKRKLMSALNQMDA 309 (405)
T ss_pred EEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc-------c---------ccceEEecCcCCHHHHHHHHHhCCE
Confidence 344423223344677888888765443 3444443210 1 23555555553 2 335666777
Q ss_pred cccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeeccc
Q 011142 361 GGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVE 411 (492)
Q Consensus 361 ~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 411 (492)
||.- |--+++.||+++|+|+|+....+ ....+ ..+-|..++..
T Consensus 310 --fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv--~~~~G~lv~~~ 356 (405)
T PRK10125 310 --LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL--QKSGGKTVSEE 356 (405)
T ss_pred --EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE--eCCcEEEECCC
Confidence 6653 23468999999999999987764 22223 33568777653
No 120
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.30 E-value=0.0088 Score=59.96 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=59.7
Q ss_pred CCCeeeecCCchh---hcccCCCccccccc----cCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeeccc
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLTH----CGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVE 411 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH----gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 411 (492)
..++.+.+++|+. .+++.+++ +|.. .|. .++.||+++|+|+|+.... .+...+ ++-..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeCC
Confidence 4578888999854 46889998 6642 343 5788999999999997653 344445 355567645332
Q ss_pred CCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 412 SPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
.+.++++++|.++++|+
T Consensus 329 --------------~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 329 --------------MTSDSIISDINRTLADP 345 (380)
T ss_pred --------------CCHHHHHHHHHHHHcCH
Confidence 57999999999999986
No 121
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0031 Score=51.14 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=70.4
Q ss_pred EEEeeCCCcCCCHHhHHH--HHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCC--ch-hhcccC
Q 011142 283 VYACLGSLCNLIPSQMRE--LGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWA--PQ-VLILSH 357 (492)
Q Consensus 283 Vyvs~Gs~~~~~~~~~~~--~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~--pq-~~lL~~ 357 (492)
+|||.||....=...+.. ..+-.+.-..++|..+|.... .| -++..+.+|. +- +.+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kp--------vagl~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KP--------VAGLRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------cc--------ccccEEEeechHHHHHHHhhc
Confidence 789999985411111111 222222334688999987643 22 1233444443 43 456777
Q ss_pred CCccccccccCchhhHHHHhcCCCeeccCCc--------cccchhHHHHHHHhccceeecc
Q 011142 358 PSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF--------GDQFMNEKLVVQILKIGVKVGV 410 (492)
Q Consensus 358 ~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~--------~DQ~~na~rv~e~~G~G~~l~~ 410 (492)
+++ +|+|+|.||+..++.-++|.+++|-. ..|-.-|..++ +.+.=+...+
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~sp 123 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSP 123 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcC
Confidence 777 99999999999999999999999943 25777788886 7776665544
No 122
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.19 E-value=0.33 Score=49.18 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=53.0
Q ss_pred hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhcccee-ecccCCcccccccccccccCHHH
Q 011142 352 VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVK-VGVESPMIWGEEQKIGVLMKRDD 430 (492)
Q Consensus 352 ~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~-l~~~~~~~~~~~~~~~~~~~~~~ 430 (492)
..+++++++ +|..==|+ +.=|+..|||.+++++ | +-....+ +..|.... .+.+ .++.++
T Consensus 322 ~~iIs~~dl--~ig~RlHa-~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~-------------~l~~~~ 381 (426)
T PRK10017 322 GKILGACEL--TVGTRLHS-AIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIR-------------HLLDGS 381 (426)
T ss_pred HHHHhhCCE--EEEecchH-HHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechh-------------hCCHHH
Confidence 368888888 88654343 4458899999999997 3 3344445 58888865 5555 589999
Q ss_pred HHHHHHHHhccCh
Q 011142 431 VRNAVEKLMDEGK 443 (492)
Q Consensus 431 l~~ai~~ll~~~~ 443 (492)
|.+.+.++++|.+
T Consensus 382 Li~~v~~~~~~r~ 394 (426)
T PRK10017 382 LQAMVADTLGQLP 394 (426)
T ss_pred HHHHHHHHHhCHH
Confidence 9999999998753
No 123
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.14 E-value=0.044 Score=49.75 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=37.1
Q ss_pred CCCeeeecCCch----hhcccCCCccccccccC----chhhHHHHhcCCCeeccCCcccc
Q 011142 340 GRGLVIWGWAPQ----VLILSHPSIGGFLTHCG----WNSTIEGVSAGLPLLTWPLFGDQ 391 (492)
Q Consensus 340 ~~nv~~~~~~pq----~~lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ 391 (492)
..|+.+.+++++ ..++..+++ +|+-.. .+++.||+++|+|+|+.+....+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 568888888632 224444777 777776 68999999999999998876543
No 124
>PRK14099 glycogen synthase; Provisional
Probab=96.98 E-value=0.38 Score=49.87 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=31.9
Q ss_pred CCccEEEEecCC------CcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPFL------AQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~~------~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|+.|||++++.- ..|=-...-.|.++|+++||+|.++.+-.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 367899999832 24555567789999999999999999843
No 125
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.87 E-value=0.002 Score=53.92 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=50.4
Q ss_pred CCCeeeecCCch-hhcccCCCccccccc--cC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcc
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFLTH--CG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMI 415 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~ItH--gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 415 (492)
..|+.+.+|+++ .++++.+++.+..+. .| -+++.|++++|+|+|+.+. .....+ +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~--~---- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLV--A---- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE---T----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEE--C----
Confidence 359999999975 558999999655442 23 4899999999999999875 122233 356777666 3
Q ss_pred cccccccccccCHHHHHHHHHHHhcc
Q 011142 416 WGEEQKIGVLMKRDDVRNAVEKLMDE 441 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~ll~~ 441 (492)
-+++++.++|.++++|
T Consensus 120 ----------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 ----------NDPEELAEAIERLLND 135 (135)
T ss_dssp ----------T-HHHHHHHHHHHHH-
T ss_pred ----------CCHHHHHHHHHHHhcC
Confidence 4799999999999875
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.82 E-value=0.061 Score=52.46 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=76.9
Q ss_pred CCeEEEEeeCCCcC---CCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeec--CCch-h
Q 011142 279 PKSVVYACLGSLCN---LIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWG--WAPQ-V 352 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~---~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~--~~pq-~ 352 (492)
+++.|.+..|+... ++.+.+.++++.+.+.++++|+..++....+.. +.+.+.. + +..+.+ -++| .
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~------~~i~~~~-~-~~~l~g~~sL~el~ 249 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRA------ERIAEAL-P-GAVVLPKMSLAEVA 249 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHH------HHHHhhC-C-CCeecCCCCHHHHH
Confidence 34556666665333 778889999888876677877765543221111 1121111 1 222223 2344 5
Q ss_pred hcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhcccee-ecccCCcccccccccccccCHHHH
Q 011142 353 LILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVK-VGVESPMIWGEEQKIGVLMKRDDV 431 (492)
Q Consensus 353 ~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~-l~~~~~~~~~~~~~~~~~~~~~~l 431 (492)
.+++++++ +|+. ..|.++=|.+.|+|+|++ ++ +.+..+.. =.|-... +... .-..++++++
T Consensus 250 ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~-P~~~~~~~~~~~----------~~~~I~~~~V 311 (319)
T TIGR02193 250 ALLAGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTG-GYGKPNVALLGE----------SGANPTPDEV 311 (319)
T ss_pred HHHHcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhcc-cCCCCceEEccC----------ccCCCCHHHH
Confidence 69999999 9998 556788888999999987 21 11222211 1111111 1100 0135999999
Q ss_pred HHHHHHHh
Q 011142 432 RNAVEKLM 439 (492)
Q Consensus 432 ~~ai~~ll 439 (492)
.+++.++|
T Consensus 312 ~~ai~~~~ 319 (319)
T TIGR02193 312 LAALEELL 319 (319)
T ss_pred HHHHHhhC
Confidence 99998875
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.79 E-value=0.0019 Score=50.37 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=47.3
Q ss_pred cchhhhcccccCCCCCeEEEEeeCCCcCC---C--HHhHHHHHHHHHhCCCCeEEEEeCCC
Q 011142 265 VDEHQCLKWLDSKAPKSVVYACLGSLCNL---I--PSQMRELGLGLEASNRPFIWVIREGE 320 (492)
Q Consensus 265 ~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~---~--~~~~~~~~~a~~~~~~~vv~~~~~~~ 320 (492)
..+..+.+|+...+.+|.|++|+||.... . ...+..++++++.++..+|.+++...
T Consensus 25 NG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 25 NGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp -SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 35678889999999999999999999873 2 24788899999999999999997654
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.74 E-value=0.017 Score=48.55 Aligned_cols=102 Identities=14% Similarity=0.186 Sum_probs=65.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMV 88 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 88 (492)
||++++.....| ...+++.|.++||+|++++.....+.... ..++.++.++.+ .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~-------~-------- 54 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSP-------R-------- 54 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCC-------C--------
Confidence 577887655555 56889999999999999999554322221 136777776321 0
Q ss_pred cccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc---cHHHHHHHcC-CCeEEEe
Q 011142 89 ASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP---YTAHIAGKFN-IPRITFH 146 (492)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~---~~~~~A~~lg-iP~v~~~ 146 (492)
. .....+ . .. .+.+++++ .+||+|.+-.... .+..++...| +|++.-.
T Consensus 55 -k-~~~~~~----~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 55 -K-SPLNYI----K-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred -C-ccHHHH----H-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 0 111111 1 12 67888998 8999998776554 2344667888 8888643
No 129
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.63 E-value=0.043 Score=55.96 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=81.3
Q ss_pred CCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHH--hcCCCeeeecCCc-----
Q 011142 278 APKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEER--IKGRGLVIWGWAP----- 350 (492)
Q Consensus 278 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~~~~~~p----- 350 (492)
+++-+||++|--....+++.++...+-+.+.+..++|....+-.-+. . + ....+. ..++.+++.+-++
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~--r--f-~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQ--R--F-RTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchH--H--H-HHHHHHhCCCccceeeccccchHHHH
Confidence 35569999998888899999999999999999999999876532110 0 0 111111 1356666655443
Q ss_pred hhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchh-HHHHHHHhccceee
Q 011142 351 QVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMN-EKLVVQILKIGVKV 408 (492)
Q Consensus 351 q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~n-a~rv~e~~G~G~~l 408 (492)
+.-.|..-.+.-+.+. |+.|.++.|+.|||||.+|.-.--... +-.+ -..|+|-.+
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hli 887 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLI 887 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHH
Confidence 2224444444446666 789999999999999999975433323 3334 377888644
No 130
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.50 E-value=0.63 Score=46.03 Aligned_cols=107 Identities=8% Similarity=0.006 Sum_probs=68.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceE-EEEecCCccccCCCCCCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIK-IVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~ 83 (492)
++|||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.+. ++.++. ...
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~-------~~~-- 67 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKN-------KKA-- 67 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEecc-------ccc--
Confidence 5789999999999999999999999998 8999999998866655321 2232 222220 000
Q ss_pred ccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
....... ....+...++. .++|++|.-........++...|.|..+.
T Consensus 68 --------~~~~~~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 68 --------GASEKIK-----NFFSLIKVLRA--NKYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred --------cHHHHHH-----HHHHHHHHHhh--CCCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 0000000 11123345555 69999996544444456777788888763
No 131
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.49 E-value=0.72 Score=47.86 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=47.3
Q ss_pred CCCeeeecCCch-hhcccCCCcccccc---ccC-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeeccc
Q 011142 340 GRGLVIWGWAPQ-VLILSHPSIGGFLT---HCG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVE 411 (492)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~It---HgG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 411 (492)
..+|.+.+|..+ ..+|+.+++ ||. .-| .+++.||+++|+|+|+... ..+...+ ++-.-|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC
Confidence 467888888765 457899998 875 345 4699999999999998754 3455556 355667777553
No 132
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.41 E-value=0.63 Score=43.94 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=70.0
Q ss_pred CCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHH
Q 011142 16 LAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAF 95 (492)
Q Consensus 16 ~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (492)
+-.-|+.-+..|..+|.++||+|.+.+-... .+.+.+.. ++|.+..+.- .+.. ....
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~-----ygf~~~~Igk--------~g~~--------tl~~ 64 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDL-----YGFPYKSIGK--------HGGV--------TLKE 64 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHH-----hCCCeEeecc--------cCCc--------cHHH
Confidence 4466888999999999999999988775421 12333222 2666666531 1111 1111
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecch
Q 011142 96 DFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 96 ~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 149 (492)
.+..+ ....-.|.+++.+ .+||+.|. -.++-+..+|-.+|+|.+.+.-..
T Consensus 65 Kl~~~-~eR~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 65 KLLES-AERVYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHH-HHHHHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 22222 2233456778888 89999999 567788899999999999975543
No 133
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.28 E-value=0.026 Score=55.43 Aligned_cols=110 Identities=15% Similarity=0.273 Sum_probs=75.4
Q ss_pred CCCeeeecCCchhhc---ccCCCccccccc-------cCc------hhhHHHHhcCCCeeccCCccccchhHHHHHHHhc
Q 011142 340 GRGLVIWGWAPQVLI---LSHPSIGGFLTH-------CGW------NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILK 403 (492)
Q Consensus 340 ~~nv~~~~~~pq~~l---L~~~~~~~~ItH-------gG~------~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G 403 (492)
..|+.+.+|+|+.++ |.. +..++... +.+ +-+.+.+++|+|+|+. ++...+..| ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 458999999998664 444 33222211 111 1267789999999985 456677888 6999
Q ss_pred cceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 011142 404 IGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQ 478 (492)
Q Consensus 404 ~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 478 (492)
+|+.++ +.+++.+++.++. ++..+.|++|+++++++++ .|-....++++++.
T Consensus 280 ~G~~v~-----------------~~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-----------------SLEELPEIIDNIT--EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-----------------CHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 999884 2457888888864 2456689999999999877 35555566655543
No 134
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.11 Score=52.80 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=78.7
Q ss_pred CCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHH--hcCCCeeeecCCch---h
Q 011142 278 APKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEER--IKGRGLVIWGWAPQ---V 352 (492)
Q Consensus 278 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~~~~~~pq---~ 352 (492)
+++.+||+|++......++.+..-..-+...+--++|..+++.+.+-.+. + .+..++ +....+++.+-.|. .
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~--l-~~la~~~Gv~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINAR--L-RDLAEREGVDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHH--H-HHHHHHcCCChhheeecCCCCCHHHH
Confidence 45679999999999999999999888888889999999888644321111 1 122222 23556666665553 4
Q ss_pred hcccCCCccccc---cccCchhhHHHHhcCCCeeccCCccccc
Q 011142 353 LILSHPSIGGFL---THCGWNSTIEGVSAGLPLLTWPLFGDQF 392 (492)
Q Consensus 353 ~lL~~~~~~~~I---tHgG~~s~~Eal~~GvP~v~~P~~~DQ~ 392 (492)
+-++.+++ |+ --||+.|..|+|..|||||..+ ++|+
T Consensus 504 a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 504 ARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred Hhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 45566666 65 4799999999999999999997 6776
No 135
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.27 E-value=0.35 Score=47.77 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=68.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEE-EEecCCccccCCCCCCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKI-VQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~~~~ 84 (492)
||||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++. +.++. ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~-------~~~--- 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPL-------GHG--- 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEeccc-------ccc---
Confidence 589999999999999999999999997 9999999998766655432 12322 21110 000
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEE
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRIT 144 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 144 (492)
...+ .....+...++. .++|++|.=....-...++...|+|.-.
T Consensus 63 ---------~~~~-----~~~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 ---------ALEI-----GERRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---------hhhh-----HHHHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0000 011223445666 7999999665555556678888888776
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.12 E-value=0.47 Score=46.77 Aligned_cols=107 Identities=8% Similarity=0.015 Sum_probs=69.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceE-EEEecCCccccCCCCCCCcc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIK-IVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~~~ 85 (492)
|||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.+. ++.++.. . .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~-------~--~-- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRK-------K--A-- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChh-------h--h--
Confidence 58899989999999999999999998 8899999998876655432 2232 3332210 0 0
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEe
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFH 146 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 146 (492)
. .....+ .... .+...++. .++|++|.-........++...|.|..+.+
T Consensus 62 ----~-~~~~~~----~~~~-~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~riG~ 110 (344)
T TIGR02201 62 ----K-AGERKL----ANQF-HLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKIGF 110 (344)
T ss_pred ----c-chHHHH----HHHH-HHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEEee
Confidence 0 000001 1111 22344566 699999965544556778889999987643
No 137
>PHA01633 putative glycosyl transferase group 1
Probab=95.33 E-value=0.17 Score=49.42 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=55.5
Q ss_pred CCCeeee---cCCch---hhcccCCCccccccc---cC-chhhHHHHhcCCCeeccCCc------ccc------chhHHH
Q 011142 340 GRGLVIW---GWAPQ---VLILSHPSIGGFLTH---CG-WNSTIEGVSAGLPLLTWPLF------GDQ------FMNEKL 397 (492)
Q Consensus 340 ~~nv~~~---~~~pq---~~lL~~~~~~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~------~DQ------~~na~r 397 (492)
+.++.+. +++++ ..+++.+++ ||.- -| .+++.||+++|+|+|+--.. +|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4578776 45554 357888888 7753 24 45899999999999986432 232 334433
Q ss_pred HHH-HhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 398 VVQ-ILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 398 v~e-~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
.++ ..|.|...+. .++++++++|.++++..
T Consensus 278 ~~~~~~g~g~~~~~---------------~d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 278 YYDKEHGQKWKIHK---------------FQIEDMANAIILAFELQ 308 (335)
T ss_pred hcCcccCceeeecC---------------CCHHHHHHHHHHHHhcc
Confidence 321 2345544433 68999999999996543
No 138
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.27 E-value=0.033 Score=47.51 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHHHHH
Q 011142 22 IPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAA 101 (492)
Q Consensus 22 ~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (492)
.-+..|+++|.++||+|++++.......-. . ...++.++.++.+... . ........
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~-------~---~~~~~~~~------- 60 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDE-----E--EEDGVRVHRLPLPRRP-------W---PLRLLRFL------- 60 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-S-----E--EETTEEEEEE--S-SS-------S---GGGHCCHH-------
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccc-----c--ccCCceEEeccCCccc-------h---hhhhHHHH-------
Confidence 346789999999999999999754333111 0 1235777776533111 0 01111111
Q ss_pred hhhhHHHHHHH--HhcCCCCcEEEEcCCCc-cHHHHHH-HcCCCeEEEec
Q 011142 102 DMLQEPVENFF--AQLKPRPNCIISDMCLP-YTAHIAG-KFNIPRITFHG 147 (492)
Q Consensus 102 ~~~~~~l~~ll--~~~~~~pDlvI~D~~~~-~~~~~A~-~lgiP~v~~~~ 147 (492)
..+.+++ ++ .+||+|.+-.... ....++. ..++|+|.-..
T Consensus 61 ----~~~~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 61 ----RRLRRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp ----HHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ----HHHHHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 2233344 55 7999999887432 2333444 88999998543
No 139
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.73 E-value=0.04 Score=49.21 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=62.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
||||+.-==+. +---+..|++.|.+.||+|+++.+...+.-....+. ....++......+ ..+.+.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit----~~~pl~~~~~~~~----~~~~~~~~~~- 70 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSIT----LHKPLRVTEVEPG----HDPGGVEAYA- 70 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS------SSSEEEEEEEE-T----TCCSTTEEEE-
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeec----CCCCeEEEEEEec----ccCCCCCEEE-
Confidence 67777763333 445688999999888999999999775543322211 1123444332100 0011111100
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCC----------Cc---cHHHHHHHcCCCeEEEecch
Q 011142 88 VASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMC----------LP---YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~----------~~---~~~~~A~~lgiP~v~~~~~~ 149 (492)
. .-.....+ .-.|..++.+ .+|||||+..- +. ++..-|...|||.+.++...
T Consensus 71 v-~GTPaDcv-------~~al~~~~~~--~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 71 V-SGTPADCV-------KLALDGLLPD--KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp E-SS-HHHHH-------HHHHHCTSTT--SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred E-cCcHHHHH-------HHHHHhhhcc--CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 0 00111222 2233445554 46999997532 22 44556677899999986653
No 140
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.68 E-value=2.9 Score=40.92 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=66.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceE-EEEecCCccccCCCCCCCcc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIK-IVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~~~ 85 (492)
|||++-..+.|++.-..++.+.|++. +.+|++++.+.+.+.++.. +.++ ++.++. ..+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~-------~~~---- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPL-------GHG---- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCC-------ccc----
Confidence 68999999999999999999999998 8999999988765554432 1222 121110 000
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEE
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRIT 144 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 144 (492)
... + .....+.+.++. .++|++|.-....-...++...|+|.-.
T Consensus 62 ----~~~----~-----~~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 62 ----ALE----L-----TERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ----chh----h-----hHHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 000 0 011233445666 6999999866555556677888888765
No 141
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.63 E-value=0.28 Score=37.81 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=50.9
Q ss_pred ccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhh
Q 011142 366 HCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEG 445 (492)
Q Consensus 366 HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~ 445 (492)
+|-..-+.|++++|+|+|+-.. ..... ...-|...-.. -+.+++.++|.++++|++..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~----~~~~~~~~~~~--------------~~~~el~~~i~~ll~~~~~~ 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE----IFEDGEHIITY--------------NDPEELAEKIEYLLENPEER 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH----HcCCCCeEEEE--------------CCHHHHHHHHHHHHCCHHHH
Confidence 4556689999999999998754 11111 22223222222 27899999999999987433
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 011142 446 EERRNRAVKLGQMANMAVQEGGSSHLNVTLVI 477 (492)
Q Consensus 446 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 477 (492)
+. +++..++.+.+.-+..+.+++++
T Consensus 67 ~~-------ia~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 RR-------IAKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HH-------HHHHHHHHHHHhCCHHHHHHHHH
Confidence 33 33333334444566666666665
No 142
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.54 E-value=0.46 Score=41.45 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=60.6
Q ss_pred ecCCCcCCHHHHHHHHHHH-HhC-CCeEEEEeCCcch--hhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccc
Q 011142 13 FPFLAQGHMIPMIDIARLL-AQR-GVIITIVTTPVNA--ARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMV 88 (492)
Q Consensus 13 ~~~~~~GH~~p~l~LA~~L-~~r-GH~Vt~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 88 (492)
+..++.||+.=|+.|.+.+ .++ .++..+++..+.. ..+.+.-+.. +....+..++ ... ..
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~---~~~~~~~~~~---------r~r----~v 66 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS---SKRHKILEIP---------RAR----EV 66 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc---cccceeeccc---------eEE----Ee
Confidence 3347899999999999999 444 4555555554332 2222111110 0011222221 100 00
Q ss_pred cccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHc------CCCeEEE
Q 011142 89 ASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKF------NIPRITF 145 (492)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l------giP~v~~ 145 (492)
. .......+.........+.-+.++ +||+||+..--. ..+.+|..+ |.+.|.+
T Consensus 67 ~-q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 67 G-QSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred c-hhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 0 012222333333334444445554 999999998554 567788999 9999986
No 143
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.29 E-value=2.8 Score=39.78 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=38.2
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhhhh
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRG--VIITIVTTPVNAARFNG 52 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~v~~ 52 (492)
|||++-..+.|++.-+.++.++|+++. -+|++++.+.+.+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 688999999999999999999999984 79999999876665543
No 144
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.15 E-value=3.3 Score=40.61 Aligned_cols=106 Identities=14% Similarity=0.070 Sum_probs=71.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
||||+++-....|++.-.+++-+.|+++ +.++++++.+.+.+.++.. ..+.-.-... ..+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~-------~~~--- 62 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIID-------KKK--- 62 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhcccc-------ccc---
Confidence 5799999999999999999999999999 5999999998866655432 1121111000 000
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
.. ........+.+.++. .++|+||.=.-.+=...++..+++|....
T Consensus 63 ------~~-------~~~~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 63 ------KG-------LGLKERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ------cc-------cchHHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 00 111233445566776 68999997766665566677889888864
No 145
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=94.03 E-value=6.4 Score=38.74 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=63.2
Q ss_pred CCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhh-H--HHHhcCCC--eeeecCCchh---hcccCCCcccc
Q 011142 292 NLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDG-F--EERIKGRG--LVIWGWAPQV---LILSHPSIGGF 363 (492)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~-~--~~~~~~~n--v~~~~~~pq~---~lL~~~~~~~~ 363 (492)
.+....+..++++++..+.++...+..+.....++.+ ++.. . +.....++ +.+.+|+||. .+|-.|++ -
T Consensus 191 ~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~-~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--N 267 (374)
T PF10093_consen 191 CYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAW-LGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF--N 267 (374)
T ss_pred eCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHH-hccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--c
Confidence 3556668888888888777777776666544443222 2100 0 00011233 5677899984 48999998 4
Q ss_pred ccccCchhhHHHHhcCCCeeccCCccccchhHHHH
Q 011142 364 LTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLV 398 (492)
Q Consensus 364 ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv 398 (492)
+-. |==|+.-|..+|+|.|=-. +=|.++|...
T Consensus 268 fVR-GEDSfVRAqwAgkPFvWhI--YpQ~d~aHl~ 299 (374)
T PF10093_consen 268 FVR-GEDSFVRAQWAGKPFVWHI--YPQEDDAHLD 299 (374)
T ss_pred eEe-cchHHHHHHHhCCCceEec--CcCchhhHHH
Confidence 444 5669999999999987544 4455555433
No 146
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.02 E-value=2.2 Score=41.54 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=38.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARF 50 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v 50 (492)
|||+++-..+.|++.-..++.+.|++. +.+|++++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 589999999999999999999999998 9999999998765544
No 147
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=93.25 E-value=0.5 Score=43.97 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=29.1
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
.++||||+.-==+ =|.--+..|++.|.+.| +|+++.+...+.
T Consensus 3 ~~~M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 3 DKKPHILVCNDDG-IEGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCCEEEEECCCC-CCCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 4567988775222 12235788999999888 799999876443
No 148
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.91 E-value=1.3 Score=38.58 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=53.3
Q ss_pred hCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHHHHHhhhhHHHHHHH
Q 011142 33 QRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAADMLQEPVENFF 112 (492)
Q Consensus 33 ~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 112 (492)
++||+|+|++........ .+++...+..+... ..+... ....++............+.++.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~---~~~~~~-----~~~~~e~~~~rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGP---TPGTHP-----YVRDFEAAVLRGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCC---CCCCCc-----ccccHHHHHHHHHHHHHHHHHHH
Confidence 579999999964432211 25777776532111 111100 01112222222233444455555
Q ss_pred HhcCCCCcEEEEcCCCccHHHHHHHc-CCCeEEEe
Q 011142 113 AQLKPRPNCIISDMCLPYTAHIAGKF-NIPRITFH 146 (492)
Q Consensus 113 ~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~v~~~ 146 (492)
++ +..||+||+-.-.-.++-+-..+ ++|.+.++
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 54 68999999997765667788888 99999863
No 149
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.86 E-value=0.83 Score=39.39 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=23.9
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 17 AQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 17 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
..|--.-+..|+++|+++||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 46677789999999999999999998864
No 150
>PHA01630 putative group 1 glycosyl transferase
Probab=91.32 E-value=5.1 Score=39.20 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=28.1
Q ss_pred CCchh---hcccCCCcccccc---ccC-chhhHHHHhcCCCeeccCCc
Q 011142 348 WAPQV---LILSHPSIGGFLT---HCG-WNSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 348 ~~pq~---~lL~~~~~~~~It---HgG-~~s~~Eal~~GvP~v~~P~~ 388 (492)
++|+. .+++.+++ |+. ..| ..++.||+++|+|+|+.-..
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 36643 36888888 652 233 46899999999999997654
No 151
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=90.79 E-value=2 Score=40.03 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=25.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
||||+.-==+. |---+..|++.|++ +|+|+++.+...+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46766652221 22237889999975 68999999876444
No 152
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=90.64 E-value=1.9 Score=45.00 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=62.7
Q ss_pred CCeeeecCCc--h-hhcccCCCcccccccc---CchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCc
Q 011142 341 RGLVIWGWAP--Q-VLILSHPSIGGFLTHC---GWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPM 414 (492)
Q Consensus 341 ~nv~~~~~~p--q-~~lL~~~~~~~~ItHg---G~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 414 (492)
..|.+.++.. + ..++.++.+ +|.=+ |.++..||+.+|+|+| .......| +...=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 4678888887 4 457878887 88765 6779999999999999 33334444 244445444 1
Q ss_pred ccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Q 011142 415 IWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQM 458 (492)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~ 458 (492)
+..+|.++|..+|.+++.-+.+...+-+.++.
T Consensus 474 ------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~ 505 (519)
T TIGR03713 474 ------------DISELLKALDYYLDNLKNWNYSLAYSIKLIDD 505 (519)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 46789999999999875445555555554444
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.31 E-value=3.9 Score=33.16 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=36.7
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
||++.+.++-.|.....-++.-|.++|++|++.......+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~ 45 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEA 45 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 588999999999999999999999999999888765433334333
No 154
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.88 E-value=1.7 Score=44.52 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=66.8
Q ss_pred cCCchhh---cccCCCcccccc---ccCc-hhhHHHHhcCCC----eeccCCccccchhHHHHHHHhccceeecccCCcc
Q 011142 347 GWAPQVL---ILSHPSIGGFLT---HCGW-NSTIEGVSAGLP----LLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMI 415 (492)
Q Consensus 347 ~~~pq~~---lL~~~~~~~~It---HgG~-~s~~Eal~~GvP----~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 415 (492)
+.+++.+ +++.+++ |+. +-|+ .+..|++++|+| +|+--..+ .+..+ +-|+.+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC-----
Confidence 4555544 5788888 775 4475 478899999999 55544332 23222 34666655
Q ss_pred cccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011142 416 WGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (492)
.+.++++++|.++|+++. ++.+++.+++.+.+. .-+...-+++++.++
T Consensus 407 ----------~d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 ----------YDIDGMADAIARALTMPL--EEREERHRAMMDKLR-----KNDVQRWREDFLSDL 454 (456)
T ss_pred ----------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHh
Confidence 578999999999998652 245555555555543 356667777887766
No 155
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.72 E-value=1.4 Score=36.91 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=42.2
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHH
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGIL 54 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~ 54 (492)
|++.||++.+.++-+|..-..-++..|..+|++|+++......+.+.+..
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a 50 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA 50 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 46789999999999999999999999999999999999865544454443
No 156
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=87.85 E-value=27 Score=33.77 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=39.7
Q ss_pred chhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccch----hHHHHHHHhccceeec
Q 011142 350 PQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFM----NEKLVVQILKIGVKVG 409 (492)
Q Consensus 350 pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~----na~rv~e~~G~G~~l~ 409 (492)
|....|+.++. ++||---.+-+.||+..|+|+.++|+.. +.. ....+ ++.|+-..+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 45667888886 4666666788999999999999999886 332 23344 3556555544
No 157
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=86.85 E-value=0.96 Score=36.75 Aligned_cols=38 Identities=5% Similarity=-0.086 Sum_probs=27.2
Q ss_pred cEEEEecCCCcC---CHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQG---HMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~G---H~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|||+|+.-|-.+ .-...++|+.+..+|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 688888876544 45678899999999999999998754
No 158
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=86.71 E-value=3.3 Score=38.26 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=60.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
||||+.-= -.=|.--+.+|++.|+ .+++|+++.+...+.-+...+. ....++...+. .......
T Consensus 1 mrILlTND-DGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slT----l~~Plr~~~~~---------~~~~av~- 64 (252)
T COG0496 1 MRILLTND-DGIHAPGIRALARALR-EGADVTVVAPDREQSGASHSLT----LHEPLRVRQVD---------NGAYAVN- 64 (252)
T ss_pred CeEEEecC-CccCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccc----cccCceeeEec---------cceEEec-
Confidence 45665541 1224444778888888 9999999999864443322110 00111111111 0000000
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCC----------Cc---cHHHHHHHcCCCeEEEecch
Q 011142 88 VASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMC----------LP---YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~----------~~---~~~~~A~~lgiP~v~~~~~~ 149 (492)
-.-.+-..-.+..++++ .+||+||+... +. +|+.=|..+|||.|.++...
T Consensus 65 ----------GTPaDCV~lal~~l~~~--~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 65 ----------GTPADCVILGLNELLKE--PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred ----------CChHHHHHHHHHHhccC--CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 00112233456677777 67999997542 22 44455678999999986653
No 159
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=86.57 E-value=3.6 Score=38.26 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=25.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
||||+.-==+. |---+.+|++.|++ +|+|+++.+...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46666652222 33347788999965 68999999876443
No 160
>PLN02939 transferase, transferring glycosyl groups
Probab=86.27 E-value=14 Score=41.17 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=53.4
Q ss_pred CCCeeeecCCchh---hcccCCCccccccc---cC-chhhHHHHhcCCCeeccCCcc--ccchh--HHHHHHHhccceee
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLTH---CG-WNSTIEGVSAGLPLLTWPLFG--DQFMN--EKLVVQILKIGVKV 408 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~~--DQ~~n--a~rv~e~~G~G~~l 408 (492)
..+|.+..+.+.. .+++.+++ ||.- =| ..+.+||+++|+|.|+....+ |-..+ ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4568887777764 47888888 7753 22 347999999999999876544 22111 11110122446555
Q ss_pred cccCCcccccccccccccCHHHHHHHHHHHhc
Q 011142 409 GVESPMIWGEEQKIGVLMKRDDVRNAVEKLMD 440 (492)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~ 440 (492)
+. .+++++.++|.+++.
T Consensus 914 ~~---------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT---------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC---------------CCHHHHHHHHHHHHH
Confidence 44 478889999888774
No 161
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=84.82 E-value=15 Score=37.51 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=77.3
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeee-ecCCc-h-hhc
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEAS-NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVI-WGWAP-Q-VLI 354 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~-~~~~p-q-~~l 354 (492)
.+.++++| +.+.+..+......+ +.+|=...+..- ...+.. + ++ -.|++. ..+.+ + .++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~-s~kL~~--L-----~~--y~nvvly~~~~~~~l~~l 344 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM-SSKLMS--L-----DK--YDNVKLYPNITTQKIQEL 344 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc-cHHHHH--H-----Hh--cCCcEEECCcChHHHHHH
Confidence 34467666 255566666655553 455554333220 122222 2 11 256554 45677 4 569
Q ss_pred ccCCCccccccccCc--hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHH
Q 011142 355 LSHPSIGGFLTHCGW--NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVR 432 (492)
Q Consensus 355 L~~~~~~~~ItHgG~--~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (492)
+..|++=+-|+||+. +++.||+.+|+|+++.=.... +...+. . |-.... -+.+++.
T Consensus 345 y~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~-~---g~l~~~---------------~~~~~m~ 402 (438)
T TIGR02919 345 YQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIA-S---ENIFEH---------------NEVDQLI 402 (438)
T ss_pred HHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Cccccc-C---CceecC---------------CCHHHHH
Confidence 999999888888774 799999999999998753322 222331 3 433333 4689999
Q ss_pred HHHHHHhccC
Q 011142 433 NAVEKLMDEG 442 (492)
Q Consensus 433 ~ai~~ll~~~ 442 (492)
++|.++|+|+
T Consensus 403 ~~i~~lL~d~ 412 (438)
T TIGR02919 403 SKLKDLLNDP 412 (438)
T ss_pred HHHHHHhcCH
Confidence 9999999987
No 162
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=41 Score=32.69 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=79.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
.++.|+.++..+-.||--+|.-=|..|++.|.+|.+++.....+.. +.. ...+|++++++.+......|.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e-~l~-----~hprI~ih~m~~l~~~~~~p~---- 79 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLE-ELL-----NHPRIRIHGMPNLPFLQGGPR---- 79 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChH-HHh-----cCCceEEEeCCCCcccCCCch----
Confidence 4467888888899999999999999999999999999876544432 222 235899999874432211111
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcC-CCccHHHHH----HHcCCCeEEEecchHHH
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDM-CLPYTAHIA----GKFNIPRITFHGTCCFC 152 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~-~~~~~~~~A----~~lgiP~v~~~~~~~~~ 152 (492)
........+.....-+-.++.- .++|.|++-+ -+.....+| ...|..+++=|....++
T Consensus 80 --------~~~l~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 80 --------VLFLPLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred --------hhhhHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1111111211112222333333 6889888654 344444444 44588888877777766
No 163
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=84.28 E-value=3 Score=38.68 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=26.7
Q ss_pred cEEEEecCCCcC-CHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011142 8 LHFVLFPFLAQG-HMIPMIDIARLLAQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 8 ~~il~~~~~~~G-H~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 49 (492)
||||+.- --| |.--+.+|+++|.+.| +|+++.+...+.-
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 4666554 222 2334788999999998 8999998764443
No 164
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=83.82 E-value=3.4 Score=42.54 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=60.1
Q ss_pred eecCCchhh---cccCCCcccccc---ccCch-hhHHHHhcCCC----eeccCCccccchhHHHHHHHhccceeecccCC
Q 011142 345 IWGWAPQVL---ILSHPSIGGFLT---HCGWN-STIEGVSAGLP----LLTWPLFGDQFMNEKLVVQILKIGVKVGVESP 413 (492)
Q Consensus 345 ~~~~~pq~~---lL~~~~~~~~It---HgG~~-s~~Eal~~GvP----~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 413 (492)
+.+++++.+ +++.+++ ||. +-|+| ++.||+++|+| +|+--..+ .+ +...-|+.+++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~----~~~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AA----EELSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----ch----hhcCCCEEECC---
Confidence 345677644 6888888 663 45654 77999999999 44432221 11 11123555554
Q ss_pred cccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011142 414 MIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (492)
-+.++++++|.++++++.+ +.+++.++.++. +. .-+...-++.++.++
T Consensus 412 ------------~d~~~la~ai~~~l~~~~~--e~~~~~~~~~~~----v~-~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ------------YDIDEVADAIHRALTMPLE--ERRERHRKLREY----VR-THDVQAWANSFLDDL 459 (460)
T ss_pred ------------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHH----HH-hCCHHHHHHHHHHhh
Confidence 4689999999999987621 222222222333 22 245555566666654
No 165
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.76 E-value=4.8 Score=34.47 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=35.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+|||++.-.|+.|-..-++.|++.|.++|+.|-=+.++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 689999999999999999999999999999987665554
No 166
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=83.61 E-value=1.7 Score=35.98 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=35.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
+||++...++.+=.. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 588888878766666 999999999999999999998866655543
No 167
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=83.55 E-value=6.1 Score=36.76 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=26.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
||||+.-==+. |.--+..|++.|.+. |+|+++.+...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 46666542221 333478899999998 7999999876443
No 168
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.63 E-value=4.1 Score=45.00 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=65.6
Q ss_pred hhcccCCCcccccc---ccCch-hhHHHHhcCCC---eeccCCccccchhHHHHHHHhc-cceeecccCCcccccccccc
Q 011142 352 VLILSHPSIGGFLT---HCGWN-STIEGVSAGLP---LLTWPLFGDQFMNEKLVVQILK-IGVKVGVESPMIWGEEQKIG 423 (492)
Q Consensus 352 ~~lL~~~~~~~~It---HgG~~-s~~Eal~~GvP---~v~~P~~~DQ~~na~rv~e~~G-~G~~l~~~~~~~~~~~~~~~ 423 (492)
.++++.+++ |+. .-|+| +.+|++++|+| ++++. |--..+ +.+| -|+.+++
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~----~~l~~~allVnP------------- 427 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAG----QSLGAGALLVNP------------- 427 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCch----hhhcCCeEEECC-------------
Confidence 357888888 774 45876 77899999999 34433 222222 2234 4666766
Q ss_pred cccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcc
Q 011142 424 VLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKHV 484 (492)
Q Consensus 424 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 484 (492)
.+.++++++|.++|+.+. ++.+++.+++.+.++ .-+...-++.+++++.+..
T Consensus 428 --~D~~~lA~AI~~aL~m~~--~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 428 --WNITEVSSAIKEALNMSD--EERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred --CCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 578999999999998331 134445555555544 3455666778888877654
No 169
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=81.43 E-value=7.9 Score=38.41 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=70.2
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccccc
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVA 89 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (492)
||+---|+.|--.=++.++..|+++| .|.+++.+.....++-...+. + ++. +
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL-----~--------------~~~--~------ 147 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL-----G--------------LPT--N------ 147 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh-----C--------------CCc--c------
Confidence 55556788999999999999999999 999999998777665443322 1 111 0
Q ss_pred ccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc-c--------------------HHHHHHHcCCCeEEEecc
Q 011142 90 SLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP-Y--------------------TAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~-~--------------------~~~~A~~lgiP~v~~~~~ 148 (492)
.+.-..+...+.+.+.+++ .+||++|.|.... + ...+|+..||+.+++.+.
T Consensus 148 ------~l~l~aEt~~e~I~~~l~~--~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 148 ------NLYLLAETNLEDIIAELEQ--EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred ------ceEEehhcCHHHHHHHHHh--cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 0111122344555666777 7999999998632 1 135788999999987544
No 170
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=79.83 E-value=20 Score=36.84 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=29.6
Q ss_pred ccEEEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPF-LAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|.+|++... .+.|-..-...|++.|+++|++|..+-+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 445666643 3588999999999999999999988755
No 171
>PRK05973 replicative DNA helicase; Provisional
Probab=79.59 E-value=13 Score=34.40 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=37.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHH
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGIL 54 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~ 54 (492)
+++.-.|+.|-..-.+.++...+++|+.|.|++.+...+.+....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~ 111 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRL 111 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHH
Confidence 566677899999999999999999999999999887766555543
No 172
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=79.22 E-value=17 Score=33.46 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=23.4
Q ss_pred CCcEEE-EcCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 118 RPNCII-SDMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 118 ~pDlvI-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
-||+++ +|+..= -|..=|..+|||+|.++-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 399887 555432 56667899999999986664
No 173
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=78.91 E-value=21 Score=31.39 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=55.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCe--EEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVI--ITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~--Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
|||+|+.++.. ..+..+.++|.+++|+ +.++.+............. .++....+...
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~-----~~~~~~~~~~~------------- 59 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK-----NGIPAQVADEK------------- 59 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH-----TTHHEEEHHGG-------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc-----CCCCEEecccc-------------
Confidence 68988865444 5577788899999997 5554443322221111100 01222211100
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
. +.......+.+.+.+++ .+||++|+-.+. .-...+-......++-+.++
T Consensus 60 ------~-----~~~~~~~~~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 60 ------N-----FQPRSENDEELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ------G-----SSSHHHHHHHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ------C-----CCchHhhhhHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 0 11111234556778888 899999987653 23344556666666765554
No 174
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=78.24 E-value=35 Score=32.08 Aligned_cols=39 Identities=8% Similarity=0.081 Sum_probs=26.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
||||+.-==+. |---+..|++.|.+.| +|+++.+...+.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 46666542222 3355889999999887 899998876443
No 175
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=78.11 E-value=3.8 Score=36.50 Aligned_cols=43 Identities=7% Similarity=-0.077 Sum_probs=33.7
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
+.+||++.-.++.|=..-...|+++|.++||+|.++.++....
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 4568888776665555447899999999999999999987544
No 176
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=77.05 E-value=22 Score=31.84 Aligned_cols=49 Identities=12% Similarity=-0.077 Sum_probs=41.3
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHH
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILA 55 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~ 55 (492)
..||++.+.++-.|-....-++.-|..+|++|++++...-.+.+.+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~ 132 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK 132 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999988665555554443
No 177
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.38 E-value=7 Score=36.94 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHhcCCCeeccCCccccch--hHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHH-HhccChhhHHHH
Q 011142 374 EGVSAGLPLLTWPLFGDQFM--NEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEK-LMDEGKEGEERR 449 (492)
Q Consensus 374 Eal~~GvP~v~~P~~~DQ~~--na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~-ll~~~~~~~~~~ 449 (492)
.++--|+|+|.+|-.+-|+. .|.|=..-+|..+.+-.. +++.+..+.+ ++.|+++...+|
T Consensus 325 QavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~----------------~aq~a~~~~q~ll~dp~r~~air 387 (412)
T COG4370 325 QAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP----------------EAQAAAQAVQELLGDPQRLTAIR 387 (412)
T ss_pred HhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC----------------chhhHHHHHHHHhcChHHHHHHH
Confidence 35778999999999998864 444443346777766543 2233334444 999995444444
No 178
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=76.08 E-value=6.8 Score=40.96 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=47.3
Q ss_pred hhhcccCCCcccccc---ccCc-hhhHHHHhcCCCeeccCCcc-ccchhHHHHHHHh-ccceeecccCCccccccccccc
Q 011142 351 QVLILSHPSIGGFLT---HCGW-NSTIEGVSAGLPLLTWPLFG-DQFMNEKLVVQIL-KIGVKVGVESPMIWGEEQKIGV 424 (492)
Q Consensus 351 q~~lL~~~~~~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~-DQ~~na~rv~e~~-G~G~~l~~~~~~~~~~~~~~~~ 424 (492)
..+++..|++ ||. +=|+ .+..||+++|+|+|.....+ .... ..+...- ..|+.+...+. .+-
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~--------~~~ 535 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRF--------KSP 535 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCc--------cch
Confidence 4456667777 665 3454 58999999999999987643 2222 2221111 25666653310 011
Q ss_pred ccCHHHHHHHHHHHhcc
Q 011142 425 LMKRDDVRNAVEKLMDE 441 (492)
Q Consensus 425 ~~~~~~l~~ai~~ll~~ 441 (492)
..+.++|++++.++++.
T Consensus 536 ~e~v~~La~~m~~~~~~ 552 (590)
T cd03793 536 DESVQQLTQYMYEFCQL 552 (590)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 24567888889888854
No 179
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=75.72 E-value=3.3 Score=36.22 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=25.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|||.++. +.|++- ..|+++..+|||+||-++-..
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 6787775 334433 268999999999999998653
No 180
>PRK06849 hypothetical protein; Provisional
Probab=75.38 E-value=22 Score=35.57 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=28.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++++||++- +.....+.+|+.|.++||+|+++....
T Consensus 3 ~~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITG----ARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467888874 223358899999999999999998764
No 181
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=75.02 E-value=22 Score=31.91 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=23.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRG--VIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~ 44 (492)
||||+++..+..+- +.+|.+.+.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEec
Confidence 58999998766433 346667777764 778876554
No 182
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=74.97 E-value=19 Score=33.75 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=23.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+++-. .|. -..|++.|.++||+|+..+..
T Consensus 1 m~ILvlGG--T~e---gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLMGG--TVD---SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEEec--hHH---HHHHHHHHHhCCCeEEEEEcc
Confidence 46777743 232 568999999999999887754
No 183
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=74.87 E-value=11 Score=30.39 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=36.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
|+++.+.+..-|-.-+..|+..|.++||+|.++......+.+.+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~ 46 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEA 46 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHH
Confidence 789999999999999999999999999999999665443444433
No 184
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=73.81 E-value=22 Score=33.88 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=34.6
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+...|.+.-.|+.|--.-.-.|.++|.++||+|-++.-.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 3457788889999999999999999999999999987544
No 185
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.73 E-value=35 Score=33.13 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=33.9
Q ss_pred ccEEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 7 QLHFVLFPFL-AQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 7 ~~~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
++||+||+.= +-|-..-.-++|-.|++.|..|.++++.+...
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 4688888854 58888888999999999999888887766443
No 186
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=72.42 E-value=51 Score=26.77 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=34.5
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVN 46 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 46 (492)
|+++.+.++-.|..-..-++.-|...|++|++.....-
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 68899999999999999999999999999999987543
No 187
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=71.91 E-value=4.9 Score=35.51 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=35.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
|+||++...++.|=.. ...+.+.|.++|++|.++.++.....+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 4578888777666555 7999999999999999999987666554
No 188
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=71.80 E-value=29 Score=32.59 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=24.9
Q ss_pred HHHHHhcCCCCcEEEEcCC----------Cc---cHHHHHHHcCCCeEEEec
Q 011142 109 ENFFAQLKPRPNCIISDMC----------LP---YTAHIAGKFNIPRITFHG 147 (492)
Q Consensus 109 ~~ll~~~~~~pDlvI~D~~----------~~---~~~~~A~~lgiP~v~~~~ 147 (492)
..++.. .+||+||+..- +. +|..-|..+|||.+.++.
T Consensus 80 ~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 80 YDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 344443 48999997542 22 445566789999999865
No 189
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=71.34 E-value=55 Score=28.02 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=24.5
Q ss_pred CCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 011142 15 FLAQGHMIPMIDIARLLAQRGVIITIV 41 (492)
Q Consensus 15 ~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 41 (492)
.++.|-..-.+.|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456899999999999999999999986
No 190
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=71.01 E-value=69 Score=29.28 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=30.0
Q ss_pred ccEEEEecCC--CcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 7 QLHFVLFPFL--AQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 7 ~~~il~~~~~--~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
||+.+|++.- .-|-......|++.|+++|++|...=
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K 38 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK 38 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEEC
Confidence 4567777744 48999999999999999999999863
No 191
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=70.46 E-value=8.3 Score=39.23 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++||||++-.++.-| +|++.|++-++-..+++.|.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pg 37 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPG 37 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECC
Confidence 468999998777666 89999999986555555443
No 192
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=70.14 E-value=16 Score=32.82 Aligned_cols=47 Identities=17% Similarity=0.083 Sum_probs=39.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
..||++.+.++-.|-....-++.-|..+|++|+++......+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 57999999999999999999999999999999988865444444443
No 193
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=69.94 E-value=64 Score=32.12 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.7
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
+++.--|+.|-..-++.+|..+++.|..|.+++.+...+.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 455556789999999999999999999999998876555443
No 194
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=69.74 E-value=63 Score=31.55 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=60.4
Q ss_pred CCCee-eecCCc---hhhcccCCCccccccc--cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCC
Q 011142 340 GRGLV-IWGWAP---QVLILSHPSIGGFLTH--CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESP 413 (492)
Q Consensus 340 ~~nv~-~~~~~p---q~~lL~~~~~~~~ItH--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 413 (492)
..|+. +.+++| ...+|..|++..|.+. =|.|+++-.++.|+|++.- .+...-.-+. +.|+=+--..+
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~-~~~ipVlf~~d-- 316 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLK-EQGIPVLFYGD-- 316 (360)
T ss_pred ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHH-hCCCeEEeccc--
Confidence 35765 456887 4669999999888775 5899999999999999875 2333334452 56665554444
Q ss_pred cccccccccccccCHHHHHHHHHHHhc
Q 011142 414 MIWGEEQKIGVLMKRDDVRNAVEKLMD 440 (492)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~ll~ 440 (492)
.++.+.|.++=+++..
T Consensus 317 -----------~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 -----------ELDEALVREAQRQLAN 332 (360)
T ss_pred -----------cCCHHHHHHHHHHHhh
Confidence 5999999999888764
No 195
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=68.35 E-value=9.3 Score=28.46 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=30.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
.-++++.++...|...+..+|+.|++.|+.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45788888889999999999999999999998654
No 196
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=68.16 E-value=26 Score=30.62 Aligned_cols=45 Identities=13% Similarity=-0.094 Sum_probs=36.2
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHH
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGIL 54 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~ 54 (492)
+++.-.|+.|=..-.+.++.+.++.|..|.+++.+...+.+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 455666789999999999999999999999999987666555443
No 197
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=68.06 E-value=1.2e+02 Score=29.53 Aligned_cols=288 Identities=15% Similarity=0.104 Sum_probs=139.1
Q ss_pred HHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc-cHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccccCcCCCccc
Q 011142 97 FFTAADMLQEPVENFFAQLKPRPNCIISDMCLP-YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFESVSSESEYL 175 (492)
Q Consensus 97 ~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (492)
+..+.-.+.-.++++++- .||+.|=..-++ .-+.+++..++|++.+...+....-+...... .
T Consensus 132 lgQaigsmIl~~Eai~r~---~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~q-------------r 195 (465)
T KOG1387|consen 132 LGQAIGSMILAFEAIIRF---PPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQ-------------R 195 (465)
T ss_pred HHHHHHHHHHHHHHHHhC---CchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHh-------------h
Confidence 445555677778888875 899888655444 34567779999999988776655332211100 0
Q ss_pred ccCCCCCCccccccccCccccchhHHHHHHhhhcc-CCccEEEEcChhhhcHHHHHHHHhhcCCc-EEEeccCCCCCccc
Q 011142 176 VVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAAD-TGTYGVIVNSFEELEPAYIKEYKKIRHDK-VWCIGPVSLSNKEY 253 (492)
Q Consensus 176 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~-~~~vGp~~~~~~~~ 253 (492)
...++- .+. .-.+-+.+..+.... ..++.+++|+...-. .....|..+ ...|-|..
T Consensus 196 q~s~~l-----~~~------KlaY~rlFa~lY~~~G~~ad~vm~NssWT~n-----HI~qiW~~~~~~iVyPPC------ 253 (465)
T KOG1387|consen 196 QKSGIL-----VWG------KLAYWRLFALLYQSAGSKADIVMTNSSWTNN-----HIKQIWQSNTCSIVYPPC------ 253 (465)
T ss_pred hhcchh-----hhH------HHHHHHHHHHHHHhccccceEEEecchhhHH-----HHHHHhhccceeEEcCCC------
Confidence 000110 000 012444555555544 456778889866422 234445432 22233321
Q ss_pred chhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHH----HHHhCC-------CCeEE--EEeCCC
Q 011142 254 SDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGL----GLEASN-------RPFIW--VIREGE 320 (492)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~----a~~~~~-------~~vv~--~~~~~~ 320 (492)
..+++...-.....+-...+++|-. .++.-+.++. -+.+.+ .+.+. .+++.+
T Consensus 254 ------------~~e~lks~~~te~~r~~~ll~l~Q~---RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRnee 318 (465)
T KOG1387|consen 254 ------------STEDLKSKFGTEGERENQLLSLAQF---RPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEE 318 (465)
T ss_pred ------------CHHHHHHHhcccCCcceEEEEEeec---CcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChh
Confidence 1223333323222344555555543 3333222222 222211 12222 233344
Q ss_pred cchhhhhccchhhHHHHh-cCCCeeeecCCchhh---cccCCCccccccccCch-----hhHHHHhcCCCeeccCCcccc
Q 011142 321 TSKELKKWVVEDGFEERI-KGRGLVIWGWAPQVL---ILSHPSIGGFLTHCGWN-----STIEGVSAGLPLLTWPLFGDQ 391 (492)
Q Consensus 321 ~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~~---lL~~~~~~~~ItHgG~~-----s~~Eal~~GvP~v~~P~~~DQ 391 (492)
+.+-.+. +. ++.+.. .++++.+..-+|..+ +|..+.. -| |+=|| ++.|.+++|.=+|+---.+--
T Consensus 319 D~ervk~--Lk-d~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~ 392 (465)
T KOG1387|consen 319 DEERVKS--LK-DLAEELKIPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPL 392 (465)
T ss_pred hHHHHHH--HH-HHHHhcCCccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCc
Confidence 5444443 32 233332 377888888888644 6666665 22 33333 678888888644332111111
Q ss_pred chhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHH
Q 011142 392 FMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMD-EGKEGEERRNRAVKLGQMANM 461 (492)
Q Consensus 392 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~a~~l~~~~~~ 461 (492)
.+.-. .. .|-...-- ..|.++-+++|-+++. |.++...++++|++=-+++.+
T Consensus 393 lDIV~---~~--~G~~tGFl-------------a~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 393 LDIVT---PW--DGETTGFL-------------APTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred eeeee---cc--CCccceee-------------cCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 11000 00 11111111 2456777888888775 444455677777766666553
No 198
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=67.89 E-value=7.6 Score=34.34 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=35.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARFN 51 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v~ 51 (492)
|+||++.-.++.| .+=...|+++|.+ .||+|.++.++.....+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 4688888877766 6668999999999 599999999988666554
No 199
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=67.46 E-value=14 Score=31.97 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEcCCCccHH-H--H--HHHc-CCCeEEEecc
Q 011142 103 MLQEPVENFFAQLKPRPNCIISDMCLPYTA-H--I--AGKF-NIPRITFHGT 148 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~-~--~--A~~l-giP~v~~~~~ 148 (492)
...+.+.+++++ .+||+||+-..+.... . + ...+ ++|.+.+.+-
T Consensus 76 ~~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 76 LFARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 556688999999 9999999998765333 1 1 1224 5787766443
No 200
>PHA02542 41 41 helicase; Provisional
Probab=66.17 E-value=2 Score=44.20 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=34.6
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARF 50 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v 50 (492)
+++...|+.|-..-.+.+|...++.|+.|.|++-+-..+.+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 56667889999999999999999999999999987655444
No 201
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=65.42 E-value=97 Score=30.78 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=36.0
Q ss_pred cccccCchhhHHHHhcCCCeec--cCCcccc------chhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHH
Q 011142 363 FLTHCGWNSTIEGVSAGLPLLT--WPLFGDQ------FMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNA 434 (492)
Q Consensus 363 ~ItHgG~~s~~Eal~~GvP~v~--~P~~~DQ------~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 434 (492)
+-|+ |..++..|+-+|.|+-. ++..+|- ..|+-++++.+-..+ ..++.++|..+
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~v-----------------vvV~~~ei~aa 309 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRV-----------------VVVEDDEIAAA 309 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceE-----------------EEeccHHHHHH
Confidence 4444 56677888888877521 1122221 235555542222222 24778899999
Q ss_pred HHHHhccC
Q 011142 435 VEKLMDEG 442 (492)
Q Consensus 435 i~~ll~~~ 442 (492)
|.++++|.
T Consensus 310 I~~l~ede 317 (457)
T KOG1250|consen 310 ILRLFEDE 317 (457)
T ss_pred HHHHHHhh
Confidence 99999764
No 202
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=65.35 E-value=89 Score=26.86 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=58.2
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe---CC--cchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT---TP--VNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~---~~--~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
-|.+++.++.|-....+.+|-+.+.+|+.|.|+- +. ..+..+ .... .++.+...... ..+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~---l~~l----~~v~~~~~g~~-------~~~~ 69 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKA---LERL----PNIEIHRMGRG-------FFWT 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHH---HHhC----CCcEEEECCCC-------CccC
Confidence 3677788899999999999999999999999943 32 111111 1111 25666654311 1110
Q ss_pred ccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP 129 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~ 129 (492)
. . . ...-...........++.+++ .++|+||.|....
T Consensus 70 ~----~--~-~~~~~~~a~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 70 T----E--N-DEEDIAAAAEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred C----C--C-hHHHHHHHHHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 0 0 0 111222233445555667777 7999999998764
No 203
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=64.88 E-value=53 Score=24.92 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCCcEEEEcCCC---------ccHHHHHHHcCCCeE
Q 011142 108 VENFFAQLKPRPNCIISDMCL---------PYTAHIAGKFNIPRI 143 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~---------~~~~~~A~~lgiP~v 143 (492)
+.+++++ .++|+||.-..- ..-..+|...+||++
T Consensus 47 i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 5667888 899999985421 123457888899986
No 204
>PRK00784 cobyric acid synthase; Provisional
Probab=64.71 E-value=58 Score=33.80 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=27.7
Q ss_pred EEEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPF-LAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.|++... ...|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 3555533 3599999999999999999999887644
No 205
>PRK08760 replicative DNA helicase; Provisional
Probab=64.47 E-value=29 Score=35.84 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=33.4
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARF 50 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v 50 (492)
+++...|+.|-..-.+.+|...+.+ |+.|.|++.+.....+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 5666688999999999999998754 9999999987655443
No 206
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=64.07 E-value=81 Score=32.71 Aligned_cols=47 Identities=4% Similarity=-0.104 Sum_probs=39.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHH
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILA 55 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~ 55 (492)
-+++.-.|+.|-..-.+.++.+.+++|..|.+++.+...+.+.....
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~ 311 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAY 311 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHH
Confidence 35666677899999999999999999999999999887776666544
No 207
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=63.64 E-value=18 Score=39.75 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=67.6
Q ss_pred eeecCCchh---hcccCCCccccccc---cCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccc
Q 011142 344 VIWGWAPQV---LILSHPSIGGFLTH---CGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIW 416 (492)
Q Consensus 344 ~~~~~~pq~---~lL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 416 (492)
++.+++++. ++++.+++ |+.- -|+ ....|++++|+|-.++|+..+--.-+. ++.-|+.+++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~----~l~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA----ELAEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH----HhCcCeEECC------
Confidence 344677765 47778888 6653 355 478999999775333333222222222 2223676665
Q ss_pred ccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 011142 417 GEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (492)
.+.++++++|.++|+++.. +.+++..++.+.++ .-+...-++.+++.+.+.
T Consensus 413 ---------~d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 ---------NDIEGIAAAIKRALEMPEE--EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred ---------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 4689999999999986521 33333444444432 356677777888887765
No 208
>PRK12342 hypothetical protein; Provisional
Probab=62.78 E-value=14 Score=34.47 Aligned_cols=40 Identities=5% Similarity=-0.019 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCc------cHHHHHHHcCCCeEEEecc
Q 011142 107 PVENFFAQLKPRPNCIISDMCLP------YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 148 (492)
.|.+.++. ..||||++..-+. -+..+|+.+|+|++.+...
T Consensus 100 ~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 34456666 5799999765433 3788999999999987655
No 209
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=62.26 E-value=93 Score=27.55 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=57.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC---C--cchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT---P--VNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~---~--~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
|.+++..+.|-....+.+|-+-.-+|.+|.++-- . ..+...... .+..+.++..+ .++..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~------~~~~v~~~~~~---------~g~tw 95 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK------FGLGVEFHGMG---------EGFTW 95 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh------hccceeEEecC---------CceeC
Confidence 6777888899888888777777777888887752 1 111111111 12357777653 22222
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP 129 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~ 129 (492)
...... . .. ..+....+.-.+.+++ .++|+||.|.+++
T Consensus 96 ~~~~~~--~--d~-~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 96 ETQDRE--A--DI-AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred CCcCcH--H--HH-HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 111111 0 11 3334445556677787 8999999999875
No 210
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=62.18 E-value=12 Score=29.01 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHHHHHhh
Q 011142 24 MIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAADM 103 (492)
Q Consensus 24 ~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (492)
++++|+.|.+.||++ ++++.....+++. ++....+.... +.++. . ....
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~---~~~~~---~----~g~~---------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKI---GEGES---P----DGRV---------- 50 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEH---STG-G---G----THCH----------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeec---ccCcc---C----Cchh----------
Confidence 578999999999765 5555544444432 56543331000 00000 0 0000
Q ss_pred hhHHHHHHHHhcCCCCcEEEEcCCCcc---------HHHHHHHcCCCeE
Q 011142 104 LQEPVENFFAQLKPRPNCIISDMCLPY---------TAHIAGKFNIPRI 143 (492)
Q Consensus 104 ~~~~l~~ll~~~~~~pDlvI~D~~~~~---------~~~~A~~lgiP~v 143 (492)
.+.+++++ .+.|+||....-.. -..+|...+||++
T Consensus 51 ---~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 ---QIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---HHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---HHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 67788888 89999998764321 1356788888876
No 211
>PRK05920 aromatic acid decarboxylase; Validated
Probab=62.16 E-value=12 Score=33.74 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=34.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
++||++.-.++.+- +=...+.+.|.+.||+|.++.++.....+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 46787776665444 688899999999999999999987555443
No 212
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=62.00 E-value=40 Score=31.52 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=34.0
Q ss_pred EEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 9 HFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 9 ~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
|+++++ -++.|......++|..+++.|++|.++..... ..+...
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 345555 56799999999999999999999999987653 344443
No 213
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=61.75 E-value=94 Score=28.12 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=27.1
Q ss_pred EEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 10 FVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 10 il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|++.. ....|-..-.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 44443 4459999999999999999999998865
No 214
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=61.75 E-value=20 Score=33.40 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=54.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
|++|+++..-+-| ..||+.|.++|+.|++.+...... .. ..+...+.
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~---------~~~~~v~~------------------ 48 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PA---------DLPGPVRV------------------ 48 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cc---------cCCceEEE------------------
Confidence 5678888655554 478999999999888766532111 00 00111110
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc-------cHHHHHHHcCCCeEEE
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP-------YTAHIAGKFNIPRITF 145 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~v~~ 145 (492)
.... ..+.+.+++++ .++++|| |..-+ -+..+|+.+|||++.+
T Consensus 49 --G~l~-----------~~~~l~~~l~~--~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 49 --GGFG-----------GAEGLAAYLRE--EGIDLVI-DATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred --CCCC-----------CHHHHHHHHHH--CCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 0000 22445667788 8999977 44433 2356889999999986
No 215
>PRK11823 DNA repair protein RadA; Provisional
Probab=61.69 E-value=85 Score=32.16 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=35.1
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
+++.-.|+.|-..-++.++..++++|+.|.+++.+...+.+..
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ 125 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKL 125 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHH
Confidence 4555577899999999999999999999999998876655543
No 216
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=61.62 E-value=1.4e+02 Score=27.96 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=55.5
Q ss_pred EEEEeeCCCcC--CCHHhHHH----HHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeee-----cCCc
Q 011142 282 VVYACLGSLCN--LIPSQMRE----LGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIW-----GWAP 350 (492)
Q Consensus 282 ~Vyvs~Gs~~~--~~~~~~~~----~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~-----~~~p 350 (492)
|.++-.|+... ++.+.... +...++..+..|+.+........ .+ ..+.........++. ++=|
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~-~~-----s~l~~~l~s~~~i~w~~~d~g~NP 237 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDT-VK-----SILKNNLNSSPGIVWNNEDTGYNP 237 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHH-HH-----HHHHhccccCceeEeCCCCCCCCc
Confidence 44444555555 44444333 44555667888888886653221 11 111111112223332 3558
Q ss_pred hhhcccCCCccccccccC-chhhHHHHhcCCCeecc
Q 011142 351 QVLILSHPSIGGFLTHCG-WNSTIEGVSAGLPLLTW 385 (492)
Q Consensus 351 q~~lL~~~~~~~~ItHgG-~~s~~Eal~~GvP~v~~ 385 (492)
..+.|+.++. +|.-.. .|-..||.+.|.|+.++
T Consensus 238 Y~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 238 YIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred hHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 8889988887 665554 58889999999998654
No 217
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=61.01 E-value=1.5e+02 Score=27.86 Aligned_cols=81 Identities=17% Similarity=0.338 Sum_probs=53.1
Q ss_pred CCCeeeecCCc---hhhcccCCCccccccc---cCch-hhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccC
Q 011142 340 GRGLVIWGWAP---QVLILSHPSIGGFLTH---CGWN-STIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVES 412 (492)
Q Consensus 340 ~~nv~~~~~~p---q~~lL~~~~~~~~ItH---gG~~-s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 412 (492)
..++.+..+++ ...+++.+++ ++.- .|.| ++.|++++|+|+|.... ......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCC-
Confidence 36788888888 2446777777 6655 3554 46999999999976643 3233333 2332355 3332
Q ss_pred CcccccccccccccCHHHHHHHHHHHhccC
Q 011142 413 PMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
.+.+++.+++..++++.
T Consensus 327 -------------~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 -------------GDVEELADALEQLLEDP 343 (381)
T ss_pred -------------CCHHHHHHHHHHHhcCH
Confidence 25789999999999875
No 218
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=60.90 E-value=1.2e+02 Score=26.93 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=62.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch---hhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA---ARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~---~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
.-.|.+++..+.|-....+.+|-+.+.+|++|.++---... .. ...+.. -.++.+........ +.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE-~~~l~~----l~~v~~~~~g~~~~-------~~ 89 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGE-RNLLEF----GGGVEFHVMGTGFT-------WE 89 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCH-HHHHhc----CCCcEEEECCCCCc-------cc
Confidence 45689999999999999999999999999999998531110 10 111111 12566665432111 11
Q ss_pred ccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP 129 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~ 129 (492)
. .. ...-...+.......++.+.+ .++|+||.|-...
T Consensus 90 ~----~~---~~e~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 90 T----QD---RERDIAAAREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred C----CC---cHHHHHHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 0 00 111222333455556667777 8999999998764
No 219
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=60.38 E-value=39 Score=31.77 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=33.0
Q ss_pred eeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccC
Q 011142 343 LVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWP 386 (492)
Q Consensus 343 v~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P 386 (492)
+.+.+-.+-.++|.+++. +||-.+. .=.||+.+|+|++++.
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEec
Confidence 444556677889999999 8888654 6789999999999974
No 220
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.44 E-value=47 Score=32.86 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=36.0
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHH
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGIL 54 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~ 54 (492)
|+|+-.-+.|-...+--||-.+.++|+.+-+++...++.-.-+.+
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQL 148 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQL 148 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHH
Confidence 455556689999999999999999999999999987765443333
No 221
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=59.25 E-value=23 Score=29.72 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=37.0
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.++.||++.+.+.-||-....-+++.|+..|.+|.....-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 36889999999999999999999999999999999887643
No 222
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=59.24 E-value=79 Score=24.97 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHH
Q 011142 19 GHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFF 98 (492)
Q Consensus 19 GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (492)
++-.-+.++++.|.+.|+++. +++.....+++. ++....+..+ .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~------~------------------- 53 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKV------S------------------- 53 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeec------C-------------------
Confidence 456678899999999999994 444444444331 4555444211 0
Q ss_pred HHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-------ccHHHHHHHcCCCeEE
Q 011142 99 TAADMLQEPVENFFAQLKPRPNCIISDMCL-------PYTAHIAGKFNIPRIT 144 (492)
Q Consensus 99 ~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-------~~~~~~A~~lgiP~v~ 144 (492)
.....+.+.+++ .++|+||.-... +.-...|-..|||++.
T Consensus 54 ----~~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 54 ----EGRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ----CCchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 022445667788 899999984321 2445678999999995
No 223
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=58.99 E-value=17 Score=33.57 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=53.6
Q ss_pred CCeEEEEeeCCCcC---CCHHhHHHHHHHHHhCCCCeEEEEeCCCc-chhhhhccchhhHHHHhcCCCeeeecC--Cch-
Q 011142 279 PKSVVYACLGSLCN---LIPSQMRELGLGLEASNRPFIWVIREGET-SKELKKWVVEDGFEERIKGRGLVIWGW--APQ- 351 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~---~~~~~~~~~~~a~~~~~~~vv~~~~~~~~-~~~~~~~~lp~~~~~~~~~~nv~~~~~--~pq- 351 (492)
+++.|.+..|+... ++.+.+.++++.+.+.+++|++..+.... .+.... +.+.. ....+.+.+- +.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQ--IAAGL----QNPVINLAGKTSLREL 177 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHH--HHTTH----TTTTEEETTTS-HHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHH--HHHhc----ccceEeecCCCCHHHH
Confidence 45677777777664 77888999999988777666655433321 111111 11110 0112333222 233
Q ss_pred hhcccCCCccccccccCchhhHHHHhcCCCeecc
Q 011142 352 VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTW 385 (492)
Q Consensus 352 ~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~ 385 (492)
..+++++++ +|+. ..|.++=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 568999999 9987 456788899999999998
No 224
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=58.72 E-value=63 Score=31.39 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCCcEEEE-cCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 117 PRPNCIIS-DMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~-D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
..||+||+ |...- .+..=|..+|||+|.++-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 37998885 54433 66777999999999986654
No 225
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=58.67 E-value=50 Score=33.21 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 011142 9 HFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIV 41 (492)
Q Consensus 9 ~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 41 (492)
+|++.. ..+.|-..-.+.|.+.|++||++|.=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 344444 446999999999999999999998654
No 226
>PRK06988 putative formyltransferase; Provisional
Probab=58.49 E-value=91 Score=30.18 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=24.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
||||+|+..+. ......+.|.++||+|..+.+..
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 57999995443 33566778888999988887753
No 227
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=58.44 E-value=12 Score=33.07 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=32.8
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
||++.-.++.|-+.-...+.++|.++|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 677777777777777789999999999999999987643
No 228
>PRK06321 replicative DNA helicase; Provisional
Probab=58.03 E-value=69 Score=33.08 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=33.2
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARF 50 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v 50 (492)
+++...|+.|-....+.+|...+. .|..|.|++-+-....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566668899999999999999884 59999999987655444
No 229
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=57.94 E-value=6.1 Score=39.29 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=64.2
Q ss_pred CCCeeeec-CCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccccc
Q 011142 340 GRGLVIWG-WAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGE 418 (492)
Q Consensus 340 ~~nv~~~~-~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~ 418 (492)
..+++... ..+-.++|..+++ +||=- ...+.|.++.+.|++......|.... .. |...+..+ +.+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~r--g~~~~~~~---~~p 316 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------ER--GFYFDYEE---DLP 316 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TS--SBSS-TTT---SSS
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------cc--CCCCchHh---hCC
Confidence 45666543 4456789999999 99987 45889999999999988766665522 22 33333210 000
Q ss_pred ccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 011142 419 EQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVT 474 (492)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 474 (492)
+..--+.++|.++|.+++++++ .++++-+++.+.+-.. .+|.++...++
T Consensus 317 ---g~~~~~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~~-~Dg~s~eri~~ 365 (369)
T PF04464_consen 317 ---GPIVYNFEELIEAIENIIENPD---EYKEKREKFRDKFFKY-NDGNSSERIVN 365 (369)
T ss_dssp ---S-EESSHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHSTT---S-HHHHHHH
T ss_pred ---CceeCCHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCCC-CCchHHHHHHH
Confidence 0123578999999999987653 4555566666666543 55555444333
No 230
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=57.93 E-value=50 Score=29.21 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=47.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeC-CcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTT-PVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~-~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
+++.+=..+.|-+.-..+|+++|.++ |++|.+-++ +...+.+.+... ......+ +|.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~----~~v~~~~--~P~D------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP----DRVDVQY--LPLD------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G----GG-SEEE-----S-------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC----CCeEEEE--eCcc-------------
Confidence 34444456689999999999999998 898888776 333333332211 0111222 2211
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccH--HHHHHHcCCCeEEE
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYT--AHIAGKFNIPRITF 145 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~--~~~A~~lgiP~v~~ 145 (492)
.. ..++.+++. ++||++|.-....|. +..|+..|||.+++
T Consensus 83 -------~~-----------~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 83 -------FP-----------WAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp -------SH-----------HHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEE
T ss_pred -------CH-----------HHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 10 112345666 799998865554433 55778899999986
No 231
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=57.66 E-value=1.8e+02 Score=27.99 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=56.1
Q ss_pred CCee-eecCCc---hhhcccCCCccccccc--cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCc
Q 011142 341 RGLV-IWGWAP---QVLILSHPSIGGFLTH--CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPM 414 (492)
Q Consensus 341 ~nv~-~~~~~p---q~~lL~~~~~~~~ItH--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 414 (492)
.++. +.+++| ...+|+.|++..|+++ =|.|+++-.++.|+|+++-- +=+.+.- +. +.|+-+-.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~-e~gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LT-EQGLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HH-hCCCeEEecCC---
Confidence 5655 355666 5679999999888886 48999999999999999762 2222322 32 56666544554
Q ss_pred ccccccccccccCHHHHHHHHHHHh
Q 011142 415 IWGEEQKIGVLMKRDDVRNAVEKLM 439 (492)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~ll 439 (492)
.++...+.++=+++.
T Consensus 278 ----------~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 ----------DLDEDIVREAQRQLA 292 (322)
T ss_pred ----------cccHHHHHHHHHHHH
Confidence 488888877755543
No 232
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.01 E-value=1.1e+02 Score=30.80 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=40.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILAR 56 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~ 56 (492)
+..|+++-.=+.|-...+--||..|.++|+.|.+++...+++-.-..+.+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~ 149 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQ 149 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHH
Confidence 34566676778999999999999999999999999998776655444443
No 233
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=56.97 E-value=44 Score=30.65 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=34.1
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
+++.-.++.|-..-...++.+.+++|..|.|++.+.....+.+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 5555677899999999998888889999999998765544443
No 234
>PRK05595 replicative DNA helicase; Provisional
Probab=56.63 E-value=70 Score=32.73 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=33.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLA-QRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~v~ 51 (492)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+.....+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 45566889999999999999876 5699999999886554443
No 235
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=55.75 E-value=1.2e+02 Score=30.90 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.6
Q ss_pred HHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 110 NFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
+.+++ .+||++|.... +..+|+.+|||++.+
T Consensus 349 ~~l~~--~~pDllig~s~---~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 349 EAVLE--FEPDLAIGTTP---LVQFAKEHGIPALYF 379 (422)
T ss_pred HHHhh--CCCCEEEcCCc---chHHHHHcCCCEEEe
Confidence 34566 79999998843 556899999999985
No 236
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=55.36 E-value=1.7e+02 Score=29.90 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEe
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFH 146 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 146 (492)
..+.+.++. .+||++|.... ...+|+.+|||++.+.
T Consensus 367 ~e~~~~i~~--~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFT--EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhh--cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 345666777 79999999864 5778999999998753
No 237
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=54.77 E-value=1.2e+02 Score=30.71 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEe
Q 011142 110 NFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFH 146 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 146 (492)
+.+++ .+||++|.. ..+..+|+.+|||.+.+.
T Consensus 344 ~~~~~--~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEE--YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhh--cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 44556 799999988 336779999999999853
No 238
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=54.54 E-value=88 Score=34.10 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=29.0
Q ss_pred EEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFL-AQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.|++.+.. ..|-..-.+.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 46666443 489999999999999999999999865
No 239
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=54.43 E-value=44 Score=30.32 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=40.5
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHH
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGIL 54 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~ 54 (492)
+..||++.+.++-.|-....-++--|..+|++|++++...-.+.+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~ 135 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA 135 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999999999999999999999765444444443
No 240
>PRK08006 replicative DNA helicase; Provisional
Probab=54.18 E-value=83 Score=32.51 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=33.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARF 50 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v 50 (492)
+++...|+.|-....+.+|...+. .|+.|.|++.+-....+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566778899999999999999875 59999999988655444
No 241
>PRK10867 signal recognition particle protein; Provisional
Probab=54.06 E-value=1.2e+02 Score=30.79 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=35.2
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhh
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFN 51 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~ 51 (492)
-|+++-.++.|-..-...||..|+++ |+.|.+++...++....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~ 145 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAI 145 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHH
Confidence 34555566899999999999999999 99999999887665443
No 242
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=53.47 E-value=1.4e+02 Score=27.03 Aligned_cols=99 Identities=9% Similarity=0.093 Sum_probs=58.2
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccccc
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVA 89 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (492)
+++.-.|+.|-..-++.++...+++|+.|.+++.+...+.+.+..... ++.+... +..... ....
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~-----~~~~~~~--------~~~~l~-~~~~- 83 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSK-----GWDLEDY--------IDKSLY-IVRL- 83 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc-----CCChHHH--------HhCCeE-EEec-
Confidence 455556788998888999888888899999999987666665543322 1211100 000000 0000
Q ss_pred ccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC
Q 011142 90 SLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL 128 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~ 128 (492)
. ...+..........+..++++ .++++||.|++.
T Consensus 84 --~-~~~~~~~~~~l~~~~~~~i~~--~~~~~vVIDsls 117 (224)
T TIGR03880 84 --D-PSDFKTSLNRIKNELPILIKE--LGASRVVIDPIS 117 (224)
T ss_pred --C-HHHHHhhHHHHHHHHHHHHHH--hCCCEEEEcChH
Confidence 0 011222233445566677777 789999999765
No 243
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=53.39 E-value=71 Score=32.80 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=34.2
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
+++.--|+.|-..-++.++..++++|+.|.|++.+.....+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 455556789999999999999999999999999876555443
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.38 E-value=23 Score=33.15 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=39.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
...++|+-.++.|-..=..+||.+|.++|+.|+|++.+.....++..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 44688888888888888999999999999999999998866666543
No 245
>PRK07773 replicative DNA helicase; Validated
Probab=52.82 E-value=74 Score=35.85 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=34.6
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFNG 52 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~~ 52 (492)
+++..-|+.|-..-.+.+|...+.+ |..|.|++-+.....+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 5666788999999999999998865 889999998766554433
No 246
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=52.57 E-value=17 Score=30.11 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 18 QGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 18 ~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
.-.+.-.+-|+..|.++||+|++++++.....++
T Consensus 10 Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp TTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 4455567888999999999999999998666554
No 247
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=52.56 E-value=17 Score=32.06 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=30.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
||++...++.|...- ..|++.|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 355555555554444 789999999999999999988665543
No 248
>PRK08506 replicative DNA helicase; Provisional
Probab=52.06 E-value=1.3e+02 Score=31.13 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=35.0
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
+++...|+.|-..-.+.+|...++.|+.|.|++.+.....+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 566668899999999999999998999999999886554443
No 249
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=51.81 E-value=96 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v~ 51 (492)
+++...|+.|=..-.+.+|..++. .|+.|.|++.+.....+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 456667889999999999999886 599999999886655543
No 250
>PRK05748 replicative DNA helicase; Provisional
Probab=51.37 E-value=90 Score=32.00 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=34.1
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v~ 51 (492)
+++...|+.|-..-.+.+|...+. .|+.|.|++.+.....+.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLV 248 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 566678899999999999999875 599999999876655443
No 251
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=51.28 E-value=80 Score=32.37 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=27.4
Q ss_pred EEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 10 FVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 10 il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|++.. ..+.|-..-...|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 44443 34588899999999999999999998854
No 252
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=50.55 E-value=1.9e+02 Score=29.44 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
..+.+++++ .+||++|.+.. ...+|+.+|||++.+
T Consensus 362 ~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 456778888 79999999965 567899999999875
No 253
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=50.29 E-value=28 Score=32.56 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCCcEEEEcCCC-----c-cHHHHHHHcCCCeEEEecc
Q 011142 107 PVENFFAQLKPRPNCIISDMCL-----P-YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~-----~-~~~~~A~~lgiP~v~~~~~ 148 (492)
.|.+.+++ ..|||||+..-+ . -+..+|+.+|+|++.+...
T Consensus 103 ~La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34456666 579999975432 2 4678999999999987655
No 254
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=50.19 E-value=1.1e+02 Score=24.84 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHhcCCCCcEEEEc
Q 011142 102 DMLQEPVENFFAQLKPRPNCIISD 125 (492)
Q Consensus 102 ~~~~~~l~~ll~~~~~~pDlvI~D 125 (492)
......+.+++++ .+||+|++=
T Consensus 86 ~~~~~~l~~~i~~--~~p~~V~t~ 107 (128)
T PF02585_consen 86 EELVRDLEDLIRE--FRPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHH--H-ESEEEEE
T ss_pred HHHHHHHHHHHHH--cCCCEEEEC
Confidence 4556678888888 899999864
No 255
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=50.15 E-value=1.2e+02 Score=30.69 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=33.6
Q ss_pred EEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLA-QRGVIITIVTTPVNAARF 50 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~v 50 (492)
+++...|+.|-..-++.+|..++ +.|+.|.|++.+.....+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 46666789999999999999887 679999999988655444
No 256
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=49.93 E-value=1.4e+02 Score=25.45 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=66.8
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCcc
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIG 361 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~ 361 (492)
.|-|-+||.. +.....++...|++++..+-..+.+... .|+.+. .|+....- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR--------~p~~l~-----------~~~~~~~~-~~~~v- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR--------TPERLL-----------EFVKEYEA-RGADV- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT--------SHHHHH-----------HHHHHTTT-TTESE-
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC--------CHHHHH-----------HHHHHhcc-CCCEE-
Confidence 4556677755 5556677777888877665555544322 232221 11111110 12344
Q ss_pred ccccccCch----hhHHHHhcCCCeeccCCccccchhHH----HHHHHhccceeecccCCcccccccccccccCHHHHHH
Q 011142 362 GFLTHCGWN----STIEGVSAGLPLLTWPLFGDQFMNEK----LVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRN 433 (492)
Q Consensus 362 ~~ItHgG~~----s~~Eal~~GvP~v~~P~~~DQ~~na~----rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (492)
||.=+|.. ++.-++ .-.|+|.+|....+....- .+.--.|+++..-.- +...+...++-
T Consensus 59 -iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-----------~~~~nAA~~A~ 125 (150)
T PF00731_consen 59 -IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-----------NNGFNAALLAA 125 (150)
T ss_dssp -EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-----------THHHHHHHHHH
T ss_pred -EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-----------cCchHHHHHHH
Confidence 88877764 344333 3799999998876443222 221012444332110 01245555555
Q ss_pred HHHHHhccChhhHHHHHHHHHHHHHHHH
Q 011142 434 AVEKLMDEGKEGEERRNRAVKLGQMANM 461 (492)
Q Consensus 434 ai~~ll~~~~~~~~~~~~a~~l~~~~~~ 461 (492)
.|-.+ .|+ +.+++.+..++..++
T Consensus 126 ~ILa~-~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 126 RILAL-KDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHT-T-H----HHHHHHHHHHHHHHH
T ss_pred HHHhc-CCH----HHHHHHHHHHHHHHc
Confidence 55433 344 777777777777654
No 257
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=49.80 E-value=21 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=26.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
||||+|+-.|.++ ...-+.|.+.||+|.-+.+.+.+
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeCCCC
Confidence 5899999777543 45677888899999888776533
No 258
>PRK05636 replicative DNA helicase; Provisional
Probab=49.55 E-value=67 Score=33.51 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=32.3
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARF 50 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v 50 (492)
+++...|+.|-..-.+.+|...+. .|..|.|++.+-....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 466668899999999999998774 58899999887655444
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=49.16 E-value=1.9e+02 Score=27.42 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=32.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVN 46 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 46 (492)
.|+|+..++.|-..-...||..|++.|+.|.++....+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 34555566799999999999999999999999987754
No 260
>PRK09739 hypothetical protein; Provisional
Probab=48.83 E-value=41 Score=30.06 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=25.0
Q ss_pred CCccEEEEec-CCCc-CCHH-HHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFP-FLAQ-GHMI-PMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~-~~~~-GH~~-p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+||||+++. +|-. |... -...+++.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 3578988876 4433 2222 244567778888999987653
No 261
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=48.81 E-value=1.4e+02 Score=30.41 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=34.3
Q ss_pred EEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLA-QRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~v~ 51 (492)
++++..++.|-..-...||..|. ++|+.|.++....++....
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~ 144 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAI 144 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHH
Confidence 45555678999999999999997 5899999999887666543
No 262
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=48.79 E-value=18 Score=34.01 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=33.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~ 51 (492)
+++...++.|-...++.++..++.. |+.|.|++.+.....+.
T Consensus 33 ~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~ 75 (271)
T cd01122 33 IILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHH
Confidence 4555567899999999999999877 99999999876554443
No 263
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=48.78 E-value=33 Score=31.44 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 20 HMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 20 H~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|...|...|++|.++||+|+++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999876
No 264
>PRK09165 replicative DNA helicase; Provisional
Probab=48.52 E-value=1.2e+02 Score=31.71 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=33.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC---------------CCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQR---------------GVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~r---------------GH~Vt~~~~~~~~~~v~ 51 (492)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+.....+.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 5666688999999999999988754 78999999887654443
No 265
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=48.24 E-value=19 Score=31.90 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 011142 24 MIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 24 ~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
-..||+++..||++|+++..+.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 4689999999999999999974
No 266
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=48.13 E-value=1.9e+02 Score=25.28 Aligned_cols=99 Identities=8% Similarity=0.037 Sum_probs=57.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe---CCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT---TPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~---~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
-|.+++..+.|-..-.+.+|-+.+.+|+.|.++- +....... ...+. .++.++.... ++...
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~-~~l~~-----~~~~~~~~g~---------g~~~~ 71 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGER-AAFEP-----HGVEFQVMGT---------GFTWE 71 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChH-HHHHh-----cCcEEEECCC---------CCeec
Confidence 4777788899999999999999999999997662 22100001 11111 1466665432 11110
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP 129 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~ 129 (492)
. .... .-...+.......++.+.+ .++|+||.|-...
T Consensus 72 ~--~~~~---~~~~~~~~~~~~a~~~l~~--~~~DlvVLDEi~~ 108 (173)
T TIGR00708 72 T--QNRE---ADTAIAKAAWQHAKEMLAD--PELDLVLLDELTY 108 (173)
T ss_pred C--CCcH---HHHHHHHHHHHHHHHHHhc--CCCCEEEehhhHH
Confidence 0 0001 1112233455556667777 7999999998764
No 267
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=47.54 E-value=25 Score=31.60 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=30.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
=|++.-.|+.|-......||++|.+++|+|...+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 345555889999999999999999999999877753
No 268
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=47.26 E-value=1e+02 Score=27.05 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQR 34 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~r 34 (492)
.+++++ .++.||..=|++|.+.|.++
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 344444 48899999999999999777
No 269
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.21 E-value=84 Score=28.58 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=61.6
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCCcc-hhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHH
Q 011142 17 AQGHMIPMIDIARLLAQRGVIITIVTTPVN-AARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAF 95 (492)
Q Consensus 17 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~-~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (492)
...|+...+.++..++.||=.+.|+++... .+.+.++.... .+..+... +..++-..... .. .
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~----~gy~~~~~----w~~G~lTN~~~---l~-----g 153 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA----GGYSHNRK----WLGGLLTNARE---LF-----G 153 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh----cCceeeee----eccceeecchh---hc-----c
Confidence 356788889999999999999999998653 34444332221 12222110 00111111000 00 0
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCCCcEEEE-cCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 96 DFFTAADMLQEPVENFFAQLKPRPNCIIS-DMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 96 ~~~~~~~~~~~~l~~ll~~~~~~pDlvI~-D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
.... -.........++.. ..+|+||+ |.... .++.=|.+++||.|.+.-+.
T Consensus 154 ~~~~-~~~~~pd~~~f~~t--~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN 206 (251)
T KOG0832|consen 154 ALVR-KFLSLPDALCFLPT--LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTN 206 (251)
T ss_pred cccc-cccCCCcceeeccc--CCcceeEecCcccccHHHHHHHHhCCCeEEEecCC
Confidence 0000 01112233334444 67898885 55544 67778999999999975553
No 270
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.04 E-value=86 Score=28.45 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=27.4
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 17 AQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 17 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
+.|-..-+..++-.+..-||.|++++++...
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 5788888999999999999999999998644
No 271
>PRK07206 hypothetical protein; Provisional
Probab=47.02 E-value=76 Score=32.02 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=23.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.+++++-.... -..+++.++++|+++++++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 35666654222 3468999999999999888753
No 272
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=46.91 E-value=35 Score=31.03 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=32.6
Q ss_pred ccEEEEecCC--CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFL--AQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~--~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.+|.+++++ +-|-....-+|+..|+++|+.|.++-..
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 4578888866 6899999999999999999999998654
No 273
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=46.80 E-value=9.5 Score=33.45 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHcCCCeEEEecchH
Q 011142 117 PRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCC 150 (492)
Q Consensus 117 ~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 150 (492)
...|+||.+.. ...+|+.+|+|++.+.++..
T Consensus 124 ~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 124 EGVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp TT--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred cCCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 58999999964 57899999999999866543
No 274
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=46.65 E-value=23 Score=31.06 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=31.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
||++.-.++. ...-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 5666665554 44455699999999999999999987555443
No 275
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=46.42 E-value=39 Score=32.91 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=32.9
Q ss_pred HHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccH------H----HHHHHcCCCeEEE
Q 011142 99 TAADMLQEPVENFFAQLKPRPNCIISDMCLPYT------A----HIAGKFNIPRITF 145 (492)
Q Consensus 99 ~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~------~----~~A~~lgiP~v~~ 145 (492)
...+...+.+.+.++. .+||++|+.+.+.++ . .+.+.++||.+.-
T Consensus 63 en~eea~~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 63 ENKEEALKKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hCHHHHHHHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3344667778888888 899999999965422 1 2446899999973
No 276
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=46.42 E-value=25 Score=32.68 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=25.2
Q ss_pred EEEEecC---C---CcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 9 HFVLFPF---L---AQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 9 ~il~~~~---~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
||++++. | ..|=-.-+-.|+++|+++||+|+++++-.
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 5666662 2 23344567889999999999999999854
No 277
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=46.29 E-value=13 Score=38.00 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=41.8
Q ss_pred hhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHH
Q 011142 371 STIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEER 448 (492)
Q Consensus 371 s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~ 448 (492)
++.||+++|.|+|+. ++..-+..+ +..--|+-.++. .-....+++++.++..|++....+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp~-------------~e~~~~~a~~~~kl~~~p~l~~~~ 440 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDPG-------------QEAVAELADALLKLRRDPELWARM 440 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCCc-------------hHHHHHHHHHHHHHhcCHHHHHHH
Confidence 689999999999986 444455555 344456666554 244457999999999999443333
No 278
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=46.16 E-value=2.1e+02 Score=29.61 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRIT 144 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 144 (492)
.++.+.+++ .+||++|.. .....+|+.+|||++-
T Consensus 383 ~e~~~~i~~--~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKE--AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhh--cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 344556777 799999997 3466789999999984
No 279
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=46.15 E-value=1.4e+02 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=26.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCC-CeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRG-VIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rG-H~Vt~~~~~ 44 (492)
|+||+++-.+..|+ .+|..|+++| ++|+++.-.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCC
Confidence 57888886554443 6899999999 999999864
No 280
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=46.05 E-value=31 Score=30.19 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=30.2
Q ss_pred EEEecCCCcCCHHH-HHHHHHHHHh-CCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIP-MIDIARLLAQ-RGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p-~l~LA~~L~~-rGH~Vt~~~~~~~~~~v~ 51 (492)
|++.-.+ .||... ...+.++|++ +||+|.++.++.....++
T Consensus 2 i~~gitG-sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITG-SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEc-cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 4444444 377766 8899999985 599999999988665444
No 281
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=45.89 E-value=1.5e+02 Score=23.58 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHHH
Q 011142 20 HMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFT 99 (492)
Q Consensus 20 H~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (492)
+-.-+..+|+.|.+.|++|. +++...+.+.+. ++....+.. ... ....
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~------~~~-~~~~-------------- 58 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAW------PSE-EPQN-------------- 58 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeee------ccC-CCCC--------------
Confidence 45568899999999999983 444444434321 343333210 000 0000
Q ss_pred HHhhhhHHHHHHHHhcCCCCcEEEEcCC---------CccHHHHHHHcCCCeEE
Q 011142 100 AADMLQEPVENFFAQLKPRPNCIISDMC---------LPYTAHIAGKFNIPRIT 144 (492)
Q Consensus 100 ~~~~~~~~l~~ll~~~~~~pDlvI~D~~---------~~~~~~~A~~lgiP~v~ 144 (492)
-.+.+.+++++ .++|+||.-+. .+.....|-.+|||++.
T Consensus 59 ----~~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 59 ----DKPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ----CchhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 01456778888 89999998432 12345678899999973
No 282
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.86 E-value=85 Score=26.12 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=37.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
.+|++.+..+-+|-.----++..|...|++|+........+.+-+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 589999999999999999999999999999999987654444433
No 283
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=45.78 E-value=28 Score=30.49 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCccccccccCchhhHHHHhcCCCeeccCCcc
Q 011142 358 PSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFG 389 (492)
Q Consensus 358 ~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~ 389 (492)
..++++|++||...+..... ++|+|-+|..+
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 33444999999999888877 99999999764
No 284
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=45.33 E-value=2.2e+02 Score=25.25 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=21.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCC--eEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGV--IITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH--~Vt~~~~~ 44 (492)
+||+++.++..+ .+.+|.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs---~~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGS---NLQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCCh---hHHHHHHHHHcCCCCceEEEEEEC
Confidence 578888755443 34567777777665 67765444
No 285
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=45.28 E-value=32 Score=33.18 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=33.2
Q ss_pred cEEEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 8 LHFVLFPF-LAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 8 ~~il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
||++|+.. ++-|-..-..++|-.++++|++|.++++.+...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 57888874 459999999999999999999999999877544
No 286
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=44.95 E-value=2.9e+02 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 16 LAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 16 ~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
...|-..-...|++.|+++|.+|..+=+.
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 34788889999999999999999987553
No 287
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=44.94 E-value=32 Score=31.76 Aligned_cols=43 Identities=5% Similarity=-0.019 Sum_probs=31.5
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhh
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFN 51 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~ 51 (492)
||++.-.++.+-+.-...|++.|.++ ||+|.++.++.....+.
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 34544444444447899999999999 99999999987555444
No 288
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=44.43 E-value=2.3e+02 Score=25.11 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=27.0
Q ss_pred ccEEEEecC---CC-cCCH-HHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 7 QLHFVLFPF---LA-QGHM-IPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 7 ~~~il~~~~---~~-~GH~-~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
|.||.++-. |+ +|=+ .-.-.|+..|+++||+|++.|.....
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 446777652 33 3333 34566788888889999999986533
No 289
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=44.18 E-value=2.1e+02 Score=24.62 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=31.8
Q ss_pred hhHHHHHHHHhcCCCCcEEEEcCCCc---cHHHHHHHcCCCeEEEecc
Q 011142 104 LQEPVENFFAQLKPRPNCIISDMCLP---YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 104 ~~~~l~~ll~~~~~~pDlvI~D~~~~---~~~~~A~~lgiP~v~~~~~ 148 (492)
..+.+.+++++ .+||+|+.-.... .+..+|..+|.|++.-+..
T Consensus 71 ~a~al~~~i~~--~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 71 YAPALVALAKK--EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 34445667777 6899999877544 5678999999999985444
No 290
>PRK11519 tyrosine kinase; Provisional
Probab=43.82 E-value=52 Score=36.08 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=31.5
Q ss_pred ccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
..|+++++ .|+-|-..-..+||..|++.|++|.++-..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 45666666 457999999999999999999999999654
No 291
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=43.30 E-value=1.4e+02 Score=29.40 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=24.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCC-eEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGV-IITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~ 43 (492)
..||+++-.++.| ..+|+.|++.|+ +++++=.
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 4688888777765 578999999998 5665543
No 292
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=43.23 E-value=2e+02 Score=25.67 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=30.0
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
|+|+-..+.|-..-..-||..++.+|..|.+++...++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 34444557999999999999999999999999987654
No 293
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=42.98 E-value=2.8e+02 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=31.1
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+++.-.|+.|=..-++.++...+++|..|.|++.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 455667789999999999999988999999999874
No 294
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=42.95 E-value=38 Score=34.06 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=36.6
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
.++.||++...++. ...=...|.+.|.+.|++|.++.++.....+..
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 45678888876665 455778999999999999999999876655543
No 295
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=42.52 E-value=2.2e+02 Score=26.07 Aligned_cols=45 Identities=13% Similarity=-0.123 Sum_probs=35.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
-+++.-.|+.|-..-.+.++.+-+++|..+.|++.+...+.+.+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~ 67 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRN 67 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHH
Confidence 356666778999998888887766889999999988766555443
No 296
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=42.47 E-value=21 Score=30.77 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=23.3
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|+||.|+-.+..| .++|+.|.++||+|+..-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 6789988665544 489999999999998875
No 297
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=42.41 E-value=2e+02 Score=27.34 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHhcCCCCcEEEE
Q 011142 103 MLQEPVENFFAQLKPRPNCIIS 124 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~ 124 (492)
.....|.+++++ .+||+||+
T Consensus 108 ~~~~~L~~iIr~--~~PdvVvT 127 (283)
T TIGR03446 108 EAAEPLVRVIRE--FRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHH--cCCEEEEe
Confidence 355778888998 89999986
No 298
>PLN02939 transferase, transferring glycosyl groups
Probab=42.36 E-value=42 Score=37.51 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCccEEEEecC---C---CcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPF---L---AQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~---~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.+.|||+|++. | ..|=-...-.|.++|++.||+|.++++-.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45799999983 2 23444567789999999999999999854
No 299
>PLN02470 acetolactate synthase
Probab=42.20 E-value=89 Score=33.31 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=51.0
Q ss_pred eeCCCcCCCHH--hHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeee--c------CCchhhcc
Q 011142 286 CLGSLCNLIPS--QMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIW--G------WAPQVLIL 355 (492)
Q Consensus 286 s~Gs~~~~~~~--~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~--~------~~pq~~lL 355 (492)
+|||....+.. .-..+++.|++.+.+.|+-+.+..... +-+.+. ..+++.+. + +.-+..-.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~------l~dal~---~~~~i~~i~~rhE~~A~~~Adgyar 72 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME------IHQALT---RSNCIRNVLCRHEQGEVFAAEGYAK 72 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHH
Confidence 45665553222 235577788888888888876664321 111111 11123221 1 11111111
Q ss_pred cCCCccccccccCc------hhhHHHHhcCCCeeccCC
Q 011142 356 SHPSIGGFLTHCGW------NSTIEGVSAGLPLLTWPL 387 (492)
Q Consensus 356 ~~~~~~~~ItHgG~------~s~~Eal~~GvP~v~~P~ 387 (492)
.+..+.++++|.|- +++.+|...++|||++.-
T Consensus 73 ~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 73 ASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred HhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 12234448888884 489999999999999963
No 300
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=41.96 E-value=45 Score=31.90 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=32.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||.++-=++-|-..-..+||..|+++|++|.++=-.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5788888889999999999999999999999888543
No 301
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=41.76 E-value=3.2e+02 Score=28.02 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
..+.+.+++ .+||++|.... ...+|+.+|||++.+
T Consensus 385 ~e~~~~i~~--~~pDl~ig~~~---~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLE--YKADLLIAGGK---ERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhh--cCCCEEEEccc---hHHHHHhcCCCEEEc
Confidence 455667777 79999998733 466788999999874
No 302
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=41.49 E-value=50 Score=29.49 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=29.6
Q ss_pred ccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.+|++.++ -++.|-..-...||..|+++|++|.++=..
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35655555 345888889999999999999999887543
No 303
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.13 E-value=46 Score=35.01 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=28.8
Q ss_pred ccEEEEec-------CCCcCCHHHHH---HHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFP-------FLAQGHMIPMI---DIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~-------~~~~GH~~p~l---~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.++++.+ .+..||+.+++ .+|+-++.+||+|.|+|..
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGt 51 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGT 51 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45677665 23589999655 4688888899999999864
No 304
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=40.77 E-value=2.6e+02 Score=24.80 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=34.0
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc-chhhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV-NAARFNG 52 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~-~~~~v~~ 52 (492)
+.++-.++.|=..-++.++..+.+.|..|.|+.++. ...++.+
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 345556789999999999999999999999999985 3444444
No 305
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=40.71 E-value=2.6e+02 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=24.6
Q ss_pred CCCcEEEEcC-CCc-cHHHHHHHcCCCeEEEecch
Q 011142 117 PRPNCIISDM-CLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~D~-~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
..||+||+-. ..- .+..=|..+|||.|.++-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 5799998544 322 56677899999999986664
No 306
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=40.67 E-value=66 Score=25.80 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=33.8
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
++..+.++..|......++..|.++|++|.+.......+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~ 43 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIV 43 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHH
Confidence 566777889999999999999999999999997654433333
No 307
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.62 E-value=43 Score=29.27 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCcc--HHHHHHHcCCCeEEEe
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPY--TAHIAGKFNIPRITFH 146 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~--~~~~A~~lgiP~v~~~ 146 (492)
..++++++- +||+||....... ....-+..|||++.+.
T Consensus 60 ~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 455666654 9999998655432 3445678999998863
No 308
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=40.37 E-value=21 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=25.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
||.++-.+..|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 456665554554 89999999999999999864
No 309
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=40.36 E-value=46 Score=31.25 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=31.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+|.++-=++-|-..-..+||..|+++|++|.++=.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~ 36 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGC 36 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 567788777899999999999999999999988743
No 310
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.36 E-value=2.9e+02 Score=28.14 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=33.3
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
|+|+-.++.|-..-+..||..|+++|+.|.+++...++.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 455556789999999999999999999999999877664
No 311
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=39.68 E-value=43 Score=30.76 Aligned_cols=20 Identities=35% Similarity=0.296 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 011142 25 IDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 25 l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.+||++|.++||+|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 57899999999999998753
No 312
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=39.68 E-value=38 Score=35.48 Aligned_cols=29 Identities=3% Similarity=0.054 Sum_probs=25.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 117 PRPNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 117 ~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
..+++||.|.. +...|+.+|++.+.+.+.
T Consensus 144 ~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 144 RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 69999999964 578999999999998775
No 313
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=38.98 E-value=39 Score=33.91 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=35.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
.+||++...++.+= .-...+++.|.+.|++|.++.++.....+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 56888877665544 5589999999999999999999886665543
No 314
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=38.83 E-value=50 Score=30.96 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=30.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|+|.++-=++-|-..-..+||..|+++|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 56777766778999999999999999999999883
No 315
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=38.77 E-value=65 Score=30.14 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=39.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHH
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILA 55 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~ 55 (492)
-+++.-.|+.|.......++...+++|..|.+++.......+.+...
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHH
Confidence 35666688999999999999999999999999999877666665543
No 316
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=38.00 E-value=65 Score=30.84 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCeEEEEeC-CcchhhhhhHHHhhhhcCCceEEEEecC
Q 011142 25 IDIARLLAQRGVIITIVTT-PVNAARFNGILARAIESGLQIKIVQFQL 71 (492)
Q Consensus 25 l~LA~~L~~rGH~Vt~~~~-~~~~~~v~~~~~~~~~~~~~i~~~~~~~ 71 (492)
.+.|++|++||.+|.+++- +.-.+.+++.++.. .+..++++.+++
T Consensus 63 KayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~--~~vev~~i~~Df 108 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRTQEKLEAVAKEIEEK--YKVEVRIIAIDF 108 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHH--hCcEEEEEEEec
Confidence 4789999999999888874 33344455555443 223455555543
No 317
>PRK04328 hypothetical protein; Provisional
Probab=37.60 E-value=3.4e+02 Score=25.16 Aligned_cols=44 Identities=14% Similarity=-0.106 Sum_probs=33.9
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
+++.-.|+.|-..-.+.++.+-+++|+.+.+++.+...+.+.+.
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHH
Confidence 55566778999888888887777889999999987766555443
No 318
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.60 E-value=36 Score=32.84 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=27.2
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++|||.|+-.+..| .++|+.|++.||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46799999655555 48899999999999988764
No 319
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=37.44 E-value=1.9e+02 Score=26.44 Aligned_cols=102 Identities=14% Similarity=0.222 Sum_probs=51.8
Q ss_pred ccEEEEecCCCc-C-CHHH--HHHHHHHHHhCCCeEEEEeCCcch--hhhhhHHHhhhhcCCceEEEEecCCccccCCCC
Q 011142 7 QLHFVLFPFLAQ-G-HMIP--MIDIARLLAQRGVIITIVTTPVNA--ARFNGILARAIESGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 7 ~~~il~~~~~~~-G-H~~p--~l~LA~~L~~rGH~Vt~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 80 (492)
...|++.+..+. . .+-. +..|++.|.++|.+|.+++++... +......... .-....+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~-----~~~~~~~~---------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGL-----QNPVINLA---------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTH-----TTTTEEET----------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhc-----ccceEeec----------
Confidence 346777765543 2 2222 689999999999899888887652 2221111000 00011100
Q ss_pred CCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecch
Q 011142 81 GCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 149 (492)
.. ....++..+++ .-|++|+-. .+...+|..+|+|.+.++...
T Consensus 170 --------~~------------~~l~e~~ali~----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 170 --------GK------------TSLRELAALIS----RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp --------TT------------S-HHHHHHHHH----TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred --------CC------------CCHHHHHHHHh----cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 00 01122344554 468999653 357889999999999987664
No 320
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=37.29 E-value=91 Score=32.56 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=36.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
-+++.-.++.|-..-+..++.+.++.|..|.+++.+...+.+.+.
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~ 319 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRN 319 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHH
Confidence 356666778999999999999999999999999987766655544
No 321
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=37.19 E-value=32 Score=33.69 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=26.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
||||.|+-.+..|. .+|..|+++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecH
Confidence 47899996665553 6889999999999999864
No 322
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=37.05 E-value=57 Score=30.13 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=25.7
Q ss_pred CCCccEEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 4 QANQLHFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 4 ~~~~~~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
++..++|+++. +|- -=..-+-.....|+++||+|++++-
T Consensus 7 ~~~~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 7 MLDPLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cccCCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEc
Confidence 45567776654 332 1224455667788999999999874
No 323
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.02 E-value=2.4e+02 Score=23.30 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=35.6
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++.||++....+-+|-..---++.-|...|++|.......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~ 40 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQ 40 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 3679999999999999999999999999999999988643
No 324
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=36.84 E-value=1.4e+02 Score=25.62 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=20.4
Q ss_pred cccccCc------hhhHHHHhcCCCeeccCCc
Q 011142 363 FLTHCGW------NSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 363 ~ItHgG~------~s~~Eal~~GvP~v~~P~~ 388 (492)
++++.|- +++.||...++|+|++.-.
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~ 94 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVGA 94 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 6666663 4788999999999999643
No 325
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=36.77 E-value=43 Score=30.14 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=24.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
||+++++- .|++- ..||..|++.||+|++.+...
T Consensus 1 m~~~~i~G---tGniG--~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIG---TGNIG--SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred CcEEEEec---cChHH--HHHHHHHHhCCCeEEEecCCC
Confidence 46677764 34333 478999999999999997654
No 326
>PTZ00445 p36-lilke protein; Provisional
Probab=36.46 E-value=2.5e+02 Score=25.44 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHHhcCCCC-cEEEEcCCCccHHHHHHHcCCCeEEEec
Q 011142 109 ENFFAQLKPRP-NCIISDMCLPYTAHIAGKFNIPRITFHG 147 (492)
Q Consensus 109 ~~ll~~~~~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 147 (492)
+.++++.+..| ++++.|.. ...+..|+.+|+-.+.+.+
T Consensus 168 e~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 168 KQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTG 206 (219)
T ss_pred HHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCC
Confidence 55666644444 67888866 4688899999999998643
No 327
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=36.22 E-value=63 Score=28.95 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=31.3
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++||.+=..|+-|-.+.|+.=|++|+++|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 57899999999999999999999999999999987654
No 328
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.13 E-value=38 Score=33.03 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=27.3
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.+|||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 46799999666555 37899999999999998874
No 329
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=35.88 E-value=61 Score=34.19 Aligned_cols=38 Identities=16% Similarity=-0.094 Sum_probs=26.4
Q ss_pred CcEEEEcCCCc---cHHHHHHHcCCCeEEEecchHHHHHHH
Q 011142 119 PNCIISDMCLP---YTAHIAGKFNIPRITFHGTCCFCLVCY 156 (492)
Q Consensus 119 pDlvI~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~ 156 (492)
-.-||+-...+ .++..++...+++..++++.++.+.-+
T Consensus 142 ~~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~ 182 (633)
T PF05693_consen 142 KPKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRY 182 (633)
T ss_dssp SEEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHH
T ss_pred CCcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhH
Confidence 35566554443 567788999999999999998887643
No 330
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.73 E-value=3.4e+02 Score=27.31 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
..+.+.++. .+||++|.... ...+|+.+|||++.+
T Consensus 346 ~e~~~~i~~--~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKE--KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhh--cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 345567777 79999999954 456899999999853
No 331
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=35.55 E-value=1.1e+02 Score=27.95 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=34.2
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFNG 52 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~~ 52 (492)
+++.-.|+.|=..-++.++..++.. |+.|.|++.+.....+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 4555567899999999999998888 999999998875554443
No 332
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=35.51 E-value=66 Score=28.75 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=29.4
Q ss_pred ccEEEEecCCCcCCHHHHHH-HHHHHHh-CCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMID-IARLLAQ-RGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~-LA~~L~~-rGH~Vt~~~~~ 44 (492)
||||+++-+...||..-+.. +++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 46888888777999998766 5666766 89999887653
No 333
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.39 E-value=67 Score=32.20 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=32.6
Q ss_pred HhhhhHHHHHHHHhcCCCCcEEEEcCCCccH------H----HHHHHcCCCeEEEe
Q 011142 101 ADMLQEPVENFFAQLKPRPNCIISDMCLPYT------A----HIAGKFNIPRITFH 146 (492)
Q Consensus 101 ~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~------~----~~A~~lgiP~v~~~ 146 (492)
.+...+.+.+.+++ .+||++|+.+.+.++ . .+.+.+|||.+.-.
T Consensus 61 ~eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKG--ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 45666788888998 899999999865422 1 23467999999853
No 334
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=35.29 E-value=68 Score=32.15 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=32.1
Q ss_pred HhhhhHHHHHHHHhcCCCCcEEEEcCCCccH------H----HHHHHcCCCeEEE
Q 011142 101 ADMLQEPVENFFAQLKPRPNCIISDMCLPYT------A----HIAGKFNIPRITF 145 (492)
Q Consensus 101 ~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~------~----~~A~~lgiP~v~~ 145 (492)
.+...+.+.+.+++ .+||++|+.+.+.++ . .+.+.+|||.+.-
T Consensus 61 ~eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 61 LEEAVARVLEMLKD--KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 45566788888998 899999999865422 1 2346799999985
No 335
>PRK12744 short chain dehydrogenase; Provisional
Probab=35.27 E-value=1.9e+02 Score=26.64 Aligned_cols=39 Identities=26% Similarity=0.094 Sum_probs=23.5
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|.++.-+-|.++++..+.| --..+|+.|+++|++|.+++
T Consensus 1 ~~~~~l~~k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKN---LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCCCCCCcEEEEECCCch---HHHHHHHHHHHCCCcEEEEe
Confidence 5543212245555533322 34578999999999977665
No 336
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=35.16 E-value=46 Score=32.17 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=27.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++|||+++-.++.|= .+|..|++.||+|+++....
T Consensus 4 ~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 357999996666553 56788999999999998754
No 337
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=34.87 E-value=86 Score=25.79 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=23.5
Q ss_pred cEEEEec-CCCcCCHH--HHHHHHHHHHhCCCeE-EEEeC
Q 011142 8 LHFVLFP-FLAQGHMI--PMIDIARLLAQRGVII-TIVTT 43 (492)
Q Consensus 8 ~~il~~~-~~~~GH~~--p~l~LA~~L~~rGH~V-t~~~~ 43 (492)
||++|+- .+-+|+-. -.+.+|+.+.+.||+| .++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 4665544 33355554 5777899999999985 55543
No 338
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=34.83 E-value=1.1e+02 Score=28.66 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=62.6
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
+...|.+.-.|+.|--.-.-.|++.|.++||+|-+++-.+..+.--.++ .|..++...+.. -+.-+ .
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl-----LGDRiRM~~~~~------d~~vf--I 94 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL-----LGDRIRMQELSR------DPGVF--I 94 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S-----S--GGGCHHHHT------STTEE--E
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc-----cccHHHhcCcCC------CCCEE--E
Confidence 3456788778899999999999999999999999987554322111110 111122111110 00000 0
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~ 148 (492)
...+.....-.+.. .......+++. ..+|+||.+..-. .-..++.....=++.+.|.
T Consensus 95 RS~atRG~lGGls~----~t~~~v~ll~a--aG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 95 RSMATRGSLGGLSR----ATRDAVRLLDA--AGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp EEE---SSHHHHHH----HHHHHHHHHHH--TT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred eecCcCCCCCCccH----hHHHHHHHHHH--cCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 00111112222222 23334556776 7999999996543 3456777777666654443
No 339
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.62 E-value=53 Score=29.68 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=26.1
Q ss_pred CCCCCCccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 1 MDTQANQLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 1 m~~~~~~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|+.+.+..+|++.. .++.|| +||+++++.|+.|.-..
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIGY-----ALAKEFARNGYLVYATA 39 (289)
T ss_pred CCcccCCCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEEc
Confidence 45555556676665 345666 79999999999986544
No 340
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=34.56 E-value=2.4e+02 Score=27.51 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHHHHHh
Q 011142 23 PMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAAD 102 (492)
Q Consensus 23 p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (492)
-+..|++.|.++|++|.+.+++..++...+..... ... ......+. . -.
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~-------~~~----------~~~~~~~l--~------------g~ 249 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL-------NTE----------QQAWCRNL--A------------GE 249 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc-------ccc----------cccceeec--c------------CC
Confidence 47899999988899999888876555444332110 000 00000000 0 01
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 103 MLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
....++..+++. -|++|+... +...+|..+|+|.|.++..
T Consensus 250 ~sL~el~ali~~----a~l~I~nDT--Gp~HlAaA~g~P~valfGp 289 (348)
T PRK10916 250 TQLEQAVILIAA----CKAIVTNDS--GLMHVAAALNRPLVALYGP 289 (348)
T ss_pred CCHHHHHHHHHh----CCEEEecCC--hHHHHHHHhCCCEEEEECC
Confidence 123344455554 689997643 5788999999999998653
No 341
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=34.34 E-value=3.6e+02 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=23.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+|+..+. ..+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 6888884433 3467788888889998877653
No 342
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.19 E-value=1e+02 Score=23.76 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=27.8
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++.||+++|..+.|--.-.-.+-+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 467999999887664444556666777789988776654
No 343
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=34.00 E-value=3e+02 Score=23.72 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=54.6
Q ss_pred HHHHHHHHh---CCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCC-CCccccccccchHHHHHHH
Q 011142 25 IDIARLLAQ---RGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEG-CENLDMVASLGLAFDFFTA 100 (492)
Q Consensus 25 l~LA~~L~~---rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 100 (492)
-.|++++.+ .+.+|.++++|.....+++. ...+.....+.++..-..+... +. .
T Consensus 13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~------~~~~~~~~Lle~D~RF~~~~~~~F~----------------f 70 (162)
T PF10237_consen 13 EFLARELLDGALDDTRIACLSTPSLYEALKKE------SKPRIQSFLLEYDRRFEQFGGDEFV----------------F 70 (162)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhh------cCCCccEEEEeecchHHhcCCcceE----------------E
Confidence 456777776 46789999999877666651 2234555555543222111111 11 1
Q ss_pred Hhhh-hHHHHHHHHhcCCCCcEEEEcCCCc---cH---HHHHHHcCCC--eEEEecchH
Q 011142 101 ADML-QEPVENFFAQLKPRPNCIISDMCLP---YT---AHIAGKFNIP--RITFHGTCC 150 (492)
Q Consensus 101 ~~~~-~~~l~~ll~~~~~~pDlvI~D~~~~---~~---~~~A~~lgiP--~v~~~~~~~ 150 (492)
.+.. -..+.+.+ . .++|+||+|+-+. |. ...++.+..| -+++++...
T Consensus 71 yD~~~p~~~~~~l-~--~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 71 YDYNEPEELPEEL-K--GKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CCCCChhhhhhhc-C--CCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 1111 11233334 3 5999999999664 22 3456677777 555444433
No 344
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=33.95 E-value=87 Score=31.96 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=25.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+||||++-.++..| +|++.|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 57999987776655 788899998988877744
No 345
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.62 E-value=1.4e+02 Score=29.19 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=60.1
Q ss_pred cEEEEecCCCc-CC----HHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCC
Q 011142 8 LHFVLFPFLAQ-GH----MIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGC 82 (492)
Q Consensus 8 ~~il~~~~~~~-GH----~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 82 (492)
..|+|.|..+. .+ .--+..|++.|.++|.+|.++.++...+..++..... ..... +.
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~-----~~~~~-l~------------ 237 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGL-----PNAVI-LA------------ 237 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhc-----CCccc-cC------------
Confidence 46777776232 22 2358899999999999999999885444443332111 00000 00
Q ss_pred CccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecch
Q 011142 83 ENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 149 (492)
-.....++..+++ .-|++|+-. .+...+|..+|.|.|.++...
T Consensus 238 ------------------~k~sL~e~~~li~----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 238 ------------------GKTSLEELAALIA----GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred ------------------CCCCHHHHHHHHh----cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 0112233344553 468888653 357889999999999987654
No 346
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=33.55 E-value=62 Score=33.92 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEe
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFH 146 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 146 (492)
++.+.+++ .+||+||.+.. ...+|+.+|||++.++
T Consensus 353 el~~~i~~--~~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAE--AAPELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHh--cCCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 56667777 79999998863 5668999999998764
No 347
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=33.25 E-value=3.2e+02 Score=25.49 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=34.9
Q ss_pred HHHhcCCCe---eccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHH
Q 011142 374 EGVSAGLPL---LTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVE 436 (492)
Q Consensus 374 Eal~~GvP~---v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 436 (492)
.|.-.|+|. |++=-.+.+.+|.+.+ |++++.+.+.++. |..| -+.+.|..+..
T Consensus 165 ~~~~~~~p~~~Iia~~GPfs~~~n~all-~q~~id~vItK~S----G~~G-----g~~~Ki~aA~e 220 (257)
T COG2099 165 KCEDLGVPPARIIAMRGPFSEEDNKALL-EQYRIDVVVTKNS----GGAG-----GTYEKIEAARE 220 (257)
T ss_pred HHHhcCCChhhEEEecCCcChHHHHHHH-HHhCCCEEEEccC----Cccc-----CcHHHHHHHHH
Confidence 344456663 4553347888999999 7999999998874 2221 56666665543
No 348
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.22 E-value=2.1e+02 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=22.7
Q ss_pred CCCcEEEEcCCCc---cHHHHHHHcCCCeEE
Q 011142 117 PRPNCIISDMCLP---YTAHIAGKFNIPRIT 144 (492)
Q Consensus 117 ~~pDlvI~D~~~~---~~~~~A~~lgiP~v~ 144 (492)
.+-++.+.|..+. -+..+|...|||++.
T Consensus 148 k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 148 KERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 3469999999876 346789999999996
No 349
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=33.16 E-value=66 Score=32.76 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
.+.+++++ .+||++|.+.. ...+|+.+|+|++.++..
T Consensus 361 e~~~~i~~--~~pdliig~~~---~~~~a~~~gip~~~~~~p 397 (430)
T cd01981 361 EVGDMIAR--TEPELIFGTQM---ERHIGKRLDIPCAVISAP 397 (430)
T ss_pred HHHHHHHh--hCCCEEEecch---hhHHHHHcCCCEEEEeCC
Confidence 45667777 78999999964 445689999999986443
No 350
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=33.15 E-value=59 Score=31.48 Aligned_cols=38 Identities=8% Similarity=-0.116 Sum_probs=30.3
Q ss_pred cEEEEecCCC---cCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLA---QGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~---~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|||+|+.-|- .-+......|.++.++|||+|.++.+..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 5787777542 4556678899999999999999999864
No 351
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=33.05 E-value=1.9e+02 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=31.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVN 46 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 46 (492)
.+||+++- - +|-+....++..|.+-|.+|++++++..
T Consensus 2 gl~i~~vG--D-~~~rv~~Sl~~~~~~~g~~~~~~~P~~~ 38 (158)
T PF00185_consen 2 GLKIAYVG--D-GHNRVAHSLIELLAKFGMEVVLIAPEGL 38 (158)
T ss_dssp TEEEEEES--S-TTSHHHHHHHHHHHHTTSEEEEESSGGG
T ss_pred CCEEEEEC--C-CCChHHHHHHHHHHHcCCEEEEECCCcc
Confidence 46777773 3 8899999999999999999999999874
No 352
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=33.03 E-value=64 Score=30.32 Aligned_cols=40 Identities=3% Similarity=0.060 Sum_probs=26.5
Q ss_pred eEEEEeeCCCcCCCHH-hHHHHHHHHHh--CCCCeEEEEeCCC
Q 011142 281 SVVYACLGSLCNLIPS-QMRELGLGLEA--SNRPFIWVIREGE 320 (492)
Q Consensus 281 ~~Vyvs~Gs~~~~~~~-~~~~~~~a~~~--~~~~vv~~~~~~~ 320 (492)
.++++||||...-... .+..+...+++ +++.|-|++.+..
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~ 44 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRI 44 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHH
Confidence 4899999998875444 78888888775 5889999987653
No 353
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=32.85 E-value=45 Score=31.96 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=24.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|||+++-.++.| ..+|..|++.||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 578888666554 3678889999999999987
No 354
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.69 E-value=3.8e+02 Score=27.14 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=34.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
..|+|+-..+.|-..-+..||..|..+|+.|.+++...++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4567777778999999999999999999999999987654
No 355
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=32.68 E-value=1.7e+02 Score=28.46 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHHHHHh
Q 011142 23 PMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAAD 102 (492)
Q Consensus 23 p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (492)
-+..|++.|.+.|.+|.+++++...+......... +....+. .-.
T Consensus 195 ~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~---------------------~~~~~~l--------------~g~ 239 (334)
T TIGR02195 195 HYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL---------------------PGELRNL--------------AGE 239 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC---------------------CcccccC--------------CCC
Confidence 57789999988899999888876555443321100 0000000 000
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 103 MLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
....++..+++. -|++|+-.. +...+|..+|+|.|.++..
T Consensus 240 ~sL~el~ali~~----a~l~I~~DS--Gp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 240 TSLDEAVDLIAL----AKAVVTNDS--GLMHVAAALNRPLVALYGS 279 (334)
T ss_pred CCHHHHHHHHHh----CCEEEeeCC--HHHHHHHHcCCCEEEEECC
Confidence 123344556654 689997643 5788999999999987554
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.51 E-value=4.4e+02 Score=25.56 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=32.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
-|+++-.++.|-..-+..||..|+.+|++|.++....++
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 355665668999999999999999999999999876543
No 357
>PRK09620 hypothetical protein; Provisional
Probab=32.44 E-value=65 Score=29.61 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 011142 25 IDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 25 l~LA~~L~~rGH~Vt~~~~~ 44 (492)
..||++|.++|++|+++..+
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 67899999999999999764
No 358
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=32.41 E-value=67 Score=32.67 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
.++.+++++ .+||+||.+.. ...+|+.+|+|++.+
T Consensus 361 ~el~~~i~~--~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKE--EPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhc--cCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 455667777 78999999965 467888999999875
No 359
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=32.24 E-value=85 Score=30.07 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=30.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|.+|.|..-++-|-..-..+||..|++.|++|.++-.
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3345565566789999999999999999999999944
No 360
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=32.21 E-value=80 Score=27.23 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=30.8
Q ss_pred ccEEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFL-AQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
||+|+=++.. ..|-..=+-.|++.|.+||+.|..+=+.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 4566555544 5999999999999999999999998763
No 361
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=32.13 E-value=2.4e+02 Score=25.22 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=32.1
Q ss_pred ccEEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFL-AQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.++-|+..| ..|-..-++.-++....+|-.|.++.+.
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~ 41 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA 41 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc
Confidence 5566666655 4899999999999999999999999985
No 362
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.13 E-value=1.6e+02 Score=27.67 Aligned_cols=86 Identities=19% Similarity=0.327 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHHHHHh
Q 011142 23 PMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAAD 102 (492)
Q Consensus 23 p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (492)
-+..|++.|.++|++|.+++++...+..+...+... + ..... +. . .
T Consensus 141 ~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~--~--~~~~~---------~~---------~------------~ 186 (279)
T cd03789 141 RFAALADRLLARGARVVLTGGPAERELAEEIAAALG--G--PRVVN---------LA---------G------------K 186 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcC--C--Ccccc---------Cc---------C------------C
Confidence 588999999999999999888765554433221100 0 00000 00 0 0
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 103 MLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
....++..+++ +-|++|+-. .+...+|..+|+|.+.++..
T Consensus 187 ~~l~e~~~li~----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 187 TSLRELAALLA----RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred CCHHHHHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 01223344554 368999643 35788899999999998654
No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.90 E-value=58 Score=31.09 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=24.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|||+++-.+..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 478887554444 5788999999999999986
No 364
>PRK03094 hypothetical protein; Provisional
Probab=31.86 E-value=42 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 011142 24 MIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 24 ~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+..|.+.|+++||+|.=+.++
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457999999999999877653
No 365
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.80 E-value=2.4e+02 Score=25.42 Aligned_cols=35 Identities=17% Similarity=-0.019 Sum_probs=24.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+++|++. ++.|++ -..|++.|.++||+|++++...
T Consensus 6 ~~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 6 GRVALVT--GAARGL--GRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeCCC
Confidence 4567664 345554 3578999999999987765543
No 366
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=31.80 E-value=76 Score=31.25 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=62.2
Q ss_pred cCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhH---HHHhcCC--CeeeecCCchh---hcccCCCccc
Q 011142 291 CNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGF---EERIKGR--GLVIWGWAPQV---LILSHPSIGG 362 (492)
Q Consensus 291 ~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~---~~~~~~~--nv~~~~~~pq~---~lL~~~~~~~ 362 (492)
..+...-+..++++++..+..+...+..+.....+..+ ++..- +...... .+.+.+|++|. .+|-.|++
T Consensus 188 F~Ye~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~-l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~-- 264 (371)
T TIGR03837 188 FCYENAALPALLDALAQSGSPVHLLVPEGRALAAVAAW-LGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDL-- 264 (371)
T ss_pred EecCChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHH-hCccccCCccccccCceEEEEcCCCChhhHHHHHHhChh--
Confidence 44566667888888887777766666555443333332 32100 0001122 35567899984 48989998
Q ss_pred cccccCchhhHHHHhcCCCeeccCCccccchhHHH
Q 011142 363 FLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKL 397 (492)
Q Consensus 363 ~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~r 397 (492)
=+-. |==|+.-|..+|.|+|=-. +=|.++|..
T Consensus 265 NfVR-GEDSFVRAqWAgkPfvWhI--YPQeddaHl 296 (371)
T TIGR03837 265 NFVR-GEDSFVRAQWAGKPFVWHI--YPQEEDAHL 296 (371)
T ss_pred cEee-chhHHHHHHHcCCCceeec--ccCchhhHH
Confidence 4444 5679999999999997544 445655543
No 367
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.52 E-value=1.9e+02 Score=25.78 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=56.6
Q ss_pred hhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHH
Q 011142 371 STIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRN 450 (492)
Q Consensus 371 s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~ 450 (492)
|+.++++-+.-.+..|+..=++..-..++ . | ....-+..-+++++-|.+.-+++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV--~--a--------------------vi~gl~~~i~~~~liD~ekm~~~qk 79 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILV--A--A--------------------VITGLYITILQKLLIDQEKMKELQK 79 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHH--H--H--------------------HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 67777777777777776543333322221 1 1 2333466777888888877789999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011142 451 RAVKLGQMANMAVQEGGSSHLNVTLVIQDIM 481 (492)
Q Consensus 451 ~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (492)
.++++++..++|-++|. ..+++++.+.=+
T Consensus 80 ~m~efq~e~~eA~~~~d--~~~lkkLq~~qm 108 (201)
T COG1422 80 MMKEFQKEFREAQESGD--MKKLKKLQEKQM 108 (201)
T ss_pred HHHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence 99999999999955544 566666665533
No 368
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=31.14 E-value=89 Score=29.30 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=30.9
Q ss_pred hHHHHHHHHhcCCCCcEEEE-----cCCCc-cHHHHHHHcCCCeEEEecc
Q 011142 105 QEPVENFFAQLKPRPNCIIS-----DMCLP-YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 105 ~~~l~~ll~~~~~~pDlvI~-----D~~~~-~~~~~A~~lgiP~v~~~~~ 148 (492)
...+.+.++. ..+||||+ |..+. -+..+|+.+|+|++.+..-
T Consensus 100 a~~Laa~~~~--~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 100 AKALAAAVKK--IGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHHHh--cCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 3455667777 89999995 33333 5678999999999986554
No 369
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=30.83 E-value=65 Score=33.69 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEec
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHG 147 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 147 (492)
.+.+.+++ .+||+||.+.. ...+|+.+|||++.++.
T Consensus 355 ei~~~i~~--~~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAA--LEPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHh--cCCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 55667777 79999999963 56679999999987643
No 370
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=30.77 E-value=45 Score=32.25 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=25.7
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
||||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 4789988655554 36788899999999988763
No 371
>PRK06756 flavodoxin; Provisional
Probab=30.50 E-value=92 Score=26.10 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=28.4
Q ss_pred ccEEEEecCCCcCCHHH-HHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIP-MIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p-~l~LA~~L~~rGH~Vt~~~~ 43 (492)
||||+++=....||.-- ...|++.|.++|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 46787777667899886 45678899999999877643
No 372
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=30.46 E-value=1.2e+02 Score=28.04 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=37.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 49 (492)
|.+|.+.-=++.|--.-..+++..|++.||+|..+...+-.+.
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDS 43 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADS 43 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcch
Confidence 4578999889999999999999999999999999987654443
No 373
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.03 E-value=74 Score=33.26 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEe
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFH 146 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 146 (492)
..+.+.+++ .+||+||.+.. ...+|+.+|||++.++
T Consensus 364 ~ei~~~I~~--~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIAR--VEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHh--cCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 455677777 79999999974 4556899999998764
No 374
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=29.87 E-value=3.1e+02 Score=28.50 Aligned_cols=108 Identities=12% Similarity=-0.018 Sum_probs=68.3
Q ss_pred eeeecCCchhh---cccCCCcccccc---ccCchhh-HHHHhcCC----CeeccCCccccchhHHHHHHHhccceeeccc
Q 011142 343 LVIWGWAPQVL---ILSHPSIGGFLT---HCGWNST-IEGVSAGL----PLLTWPLFGDQFMNEKLVVQILKIGVKVGVE 411 (492)
Q Consensus 343 v~~~~~~pq~~---lL~~~~~~~~It---HgG~~s~-~Eal~~Gv----P~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 411 (492)
+.+.+.+|+.+ +++.+++ ++. .-|+|-+ .|.++++. |+|.--+. -|+ +.+.-|+.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa---~~l~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA---VELKGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch---hhcCCCEEECC-
Confidence 34556777654 6667777 443 4688854 59999977 44443222 222 24555777766
Q ss_pred CCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 011142 412 SPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMK 482 (492)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (492)
.+.++++++|.+.|+.+. ++-++|.++|.+.++ ..++..=++.++.++.+
T Consensus 433 --------------~d~~~~A~ai~~AL~m~~--~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 --------------YDPVRMDETIYVALAMPK--AEQQARMREMFDAVN-----YYDVQRWADEFLAAVSP 482 (487)
T ss_pred --------------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhh
Confidence 579999999999998752 244556666666555 23444556677777754
No 375
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=29.82 E-value=97 Score=24.46 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=27.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.||+++|..|.|--.-.-.+-+.+.++|.++.+-...
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 35799999888765566666666677789887775543
No 376
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.81 E-value=89 Score=29.21 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.|.++.=++-|-..-..+||..|+++|++|.++=.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~ 37 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGC 37 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 56777666799999999999999999999999844
No 377
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=29.72 E-value=79 Score=28.52 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCc-------cHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLP-------YTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~v~~ 145 (492)
+.+.++++....+||+|++|..-. .|..++-.+++|.|-+
T Consensus 77 P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGV 123 (206)
T PF04493_consen 77 PCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGV 123 (206)
T ss_dssp HHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEE
T ss_pred HHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEE
Confidence 445555666556899999998632 3456778899999976
No 378
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=29.70 E-value=96 Score=25.24 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=27.7
Q ss_pred EEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 11 VLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 11 l~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+++.++..+.-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5566677777778999999999999999888654
No 379
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=29.62 E-value=59 Score=32.95 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=24.9
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+++||.|+-.+..| +.+|..|+++||+|+.+-.
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 35789888444333 4789999999999998864
No 380
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=29.59 E-value=1.3e+02 Score=24.24 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=32.5
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
||++..-++.|-......|++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888889999999999999999999999887654
No 381
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=29.53 E-value=72 Score=32.85 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=34.7
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
..||++...++.+ .+=...|++.|.++|++|.++.++.....+..
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 4678777655443 44788999999999999999999886665543
No 382
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.38 E-value=55 Score=32.14 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=27.8
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIV 41 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 41 (492)
|+...++|||.++-.+..|+ .+|..|++.|+.+.+.
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~-----alA~~La~~g~v~l~~ 36 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGT-----TVASICARRGPTLQWV 36 (341)
T ss_pred CccccCCCeEEEECCCHHHH-----HHHHHHHHCCCEEEEe
Confidence 77788899999998877776 5677889999644443
No 383
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=29.29 E-value=65 Score=29.10 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCcEEEEcCCCc-------cHHHHHHHcCCCeEEE
Q 011142 108 VENFFAQLKPRPNCIISDMCLP-------YTAHIAGKFNIPRITF 145 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~v~~ 145 (492)
+.+.+++....||+||+|..-. -|..+.-.+++|.|-+
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 4445555335799999998643 2344556678888875
No 384
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=29.28 E-value=4.5e+02 Score=27.99 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=47.0
Q ss_pred ccccccCchhhHHHH---hcCCCeeccCCcc---ccchhHHHHHHHh--ccceee-cccCCcccccccccccccCHHHHH
Q 011142 362 GFLTHCGWNSTIEGV---SAGLPLLTWPLFG---DQFMNEKLVVQIL--KIGVKV-GVESPMIWGEEQKIGVLMKRDDVR 432 (492)
Q Consensus 362 ~~ItHgG~~s~~Eal---~~GvP~v~~P~~~---DQ~~na~rv~e~~--G~G~~l-~~~~~~~~~~~~~~~~~~~~~~l~ 432 (492)
+||.=.|+-.-.-++ ..-+|+|.+|... +-.+--.-++ +. |+.+.. ..+ +..+...++
T Consensus 468 v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~-~~p~g~pv~~v~i~------------~~~~aa~~a 534 (577)
T PLN02948 468 VIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV-QMPRGVPVATVAIG------------NATNAGLLA 534 (577)
T ss_pred EEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh-cCCCCCeEEEEecC------------ChHHHHHHH
Confidence 388887764333332 3358999999853 2333223343 55 533221 111 135666666
Q ss_pred HHHHHHhccChhhHHHHHHHHHHHHHHHHHHhc
Q 011142 433 NAVEKLMDEGKEGEERRNRAVKLGQMANMAVQE 465 (492)
Q Consensus 433 ~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (492)
..|-.+ .|+ ..+++.+..++.+++.+.+
T Consensus 535 ~~i~~~-~~~----~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 535 VRMLGA-SDP----DLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred HHHHhc-CCH----HHHHHHHHHHHHHHHHHHh
Confidence 555333 345 7777887777777766544
No 385
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=29.21 E-value=3.1e+02 Score=26.87 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=24.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGV-IITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~ 44 (492)
..||+++-.++.| ..+|+.|++.|. +|+++=..
T Consensus 24 ~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 5688888777665 367888999999 67776553
No 386
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=29.17 E-value=96 Score=21.51 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=32.9
Q ss_pred cccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 011142 422 IGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQD 479 (492)
Q Consensus 422 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 479 (492)
+++.++.+++...+..+.... . .+....+-+.+-+..+..+++.-..+|+++-
T Consensus 13 ~~G~i~~~el~~~~~~~~~~~----~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGRDM----S-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTSHS----T-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcccc----c-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 457899999999999888543 1 2222223233233346677777777777654
No 387
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=29.10 E-value=1.1e+02 Score=26.20 Aligned_cols=29 Identities=31% Similarity=0.190 Sum_probs=24.1
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCC
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEASNR 310 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~ 310 (492)
.+|+++||-.......++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999888777778888888887664
No 388
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=29.10 E-value=4.3e+02 Score=23.78 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=27.9
Q ss_pred EEEEeeCCCcCCCHHhHHH-HHHHHHhCCCCeEEEEeCCC
Q 011142 282 VVYACLGSLCNLIPSQMRE-LGLGLEASNRPFIWVIREGE 320 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~-~~~a~~~~~~~vv~~~~~~~ 320 (492)
+-+.-+||...++++-+.+ ..+-++..+-.||..++.+.
T Consensus 32 i~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNp 71 (277)
T COG1927 32 IEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNP 71 (277)
T ss_pred ceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4555689999888887665 44556677778888876654
No 389
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=29.04 E-value=1e+02 Score=29.53 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=37.0
Q ss_pred ccEEEEecCCCcCCHH--------HHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHh
Q 011142 7 QLHFVLFPFLAQGHMI--------PMIDIARLLAQRGVIITIVTTPVNAARFNGILAR 56 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~--------p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~ 56 (492)
.-+|++++..-..|.. -...||+.|.+.|-+|++++.+...+.+++....
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~ 97 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAAVRA 97 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHH
Confidence 3467777633323332 3788999999999999999999988888776543
No 390
>PLN00016 RNA-binding protein; Provisional
Probab=29.00 E-value=68 Score=31.89 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=25.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++||+++..-+.|+=.--..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 46788772222222222347889999999999998864
No 391
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=28.65 E-value=81 Score=32.97 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 108 VENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
+++++++ .+||++|.+.. +..+|+.+|||++.+
T Consensus 429 l~~~l~~--~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 429 LRSLVFT--EPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHhh--cCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 3445555 68999998854 567899999999875
No 392
>PRK11914 diacylglycerol kinase; Reviewed
Probab=28.57 E-value=3e+02 Score=26.38 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=29.5
Q ss_pred CCccEEEEecCCCcCCH---HHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPFLAQGHM---IPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~---~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++|+|++++-.|..|+- .-...+.+.|.++|+++.++.+..
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 55778888887765542 234578889999999988766544
No 393
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.49 E-value=3.9e+02 Score=23.10 Aligned_cols=89 Identities=7% Similarity=0.015 Sum_probs=47.1
Q ss_pred cEEEEcChhhhcHHHHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCC
Q 011142 214 YGVIVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNL 293 (492)
Q Consensus 214 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~ 293 (492)
..+++.+-++.-..........+ |++..+|-....-.. ...+++.+.+....++ +|+|++|+=.
T Consensus 48 ~v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~~~------------~~~~~i~~~I~~~~pd-iv~vglG~Pk-- 111 (171)
T cd06533 48 RVFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYFGP------------EEEEEIIERINASGAD-ILFVGLGAPK-- 111 (171)
T ss_pred eEEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCCCh------------hhHHHHHHHHHHcCCC-EEEEECCCCH--
Confidence 44555555544344444556666 667777732211110 0234466677665444 9999999833
Q ss_pred CHHhHHHHHHHHHhCCCCeEEEEeCCCc
Q 011142 294 IPSQMRELGLGLEASNRPFIWVIREGET 321 (492)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~vv~~~~~~~~ 321 (492)
+...+.... ..++..++..+|+..+
T Consensus 112 QE~~~~~~~---~~l~~~v~~~vG~~~d 136 (171)
T cd06533 112 QELWIARHK---DRLPVPVAIGVGGSFD 136 (171)
T ss_pred HHHHHHHHH---HHCCCCEEEEeceeeE
Confidence 222222232 3446777777776543
No 394
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=28.40 E-value=99 Score=29.20 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=30.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
.+|.|+-=++-|-..-..+||..|+++|++|.++=
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 46777766679999999999999999999998884
No 395
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=28.23 E-value=2.4e+02 Score=25.91 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=23.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.++++ ++.|.+- ..+|+.|+++|++|.++...
T Consensus 16 k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 555555 3444443 68899999999999988765
No 396
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=28.20 E-value=1.2e+02 Score=27.70 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=29.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCe-EEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVI-ITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~-Vt~~~~ 43 (492)
|.=|+|+-.|..|-......|.+.|+++||. ++.+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 3457777799999999999999999999986 444443
No 397
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=28.05 E-value=97 Score=29.04 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=27.7
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|.+.-=++-|-..-..+||..|+++|++|.++=
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344445579999999999999999999999884
No 398
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=28.03 E-value=1.3e+02 Score=26.93 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=30.2
Q ss_pred CccEEEEec--CCCcCCHHHHHHHHHHHHh-CCCeEEEEeCC
Q 011142 6 NQLHFVLFP--FLAQGHMIPMIDIARLLAQ-RGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~--~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~ 44 (492)
+++|++.++ -++.|-..-...||..|++ .|++|.++=..
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 356665555 3578889999999999997 69999998544
No 399
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.90 E-value=2.3e+02 Score=24.36 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=48.8
Q ss_pred hhhHHHHhcCCCeeccC-CccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHH
Q 011142 370 NSTIEGVSAGLPLLTWP-LFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEER 448 (492)
Q Consensus 370 ~s~~Eal~~GvP~v~~P-~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~ 448 (492)
-|+.|-..+|.=.+.== +..=+..|+++. ++.|.=..+-.. ..+.++|.++..+-|.|. ...++
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk-------------g~~k~~Il~a~~~Rl~n~-~e~E~ 152 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK-------------GNTKDTILAAFERRLDND-REQEF 152 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec-------------CCCHHHHHHHHHHHhccc-HHHHH
Confidence 46777777776543210 001156899999 699988777665 478999999999999875 33345
Q ss_pred HHHHHHHHHH
Q 011142 449 RNRAVKLGQM 458 (492)
Q Consensus 449 ~~~a~~l~~~ 458 (492)
+..+.++.+.
T Consensus 153 ~tAl~eI~rI 162 (176)
T COG3195 153 ATALAEIERI 162 (176)
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 400
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=27.79 E-value=1.2e+02 Score=28.66 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=24.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+++.++++..+.|= =.++|+.|++|||+|.++.-.
T Consensus 5 ~~~~~lITGASsGI---G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 5 KGKTALITGASSGI---GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCcEEEEECCCchH---HHHHHHHHHHCCCEEEEEeCc
Confidence 34556666443331 258999999999999999853
No 401
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.62 E-value=1.1e+02 Score=25.03 Aligned_cols=38 Identities=8% Similarity=0.241 Sum_probs=28.5
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHh--CCCCeEEEEeC
Q 011142 281 SVVYACLGSLCNLIPSQMRELGLGLEA--SNRPFIWVIRE 318 (492)
Q Consensus 281 ~~Vyvs~Gs~~~~~~~~~~~~~~a~~~--~~~~vv~~~~~ 318 (492)
.++++++||......+.+..+.+.+++ .++.|-|.+.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999987555667788887753 45677788754
No 402
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=27.42 E-value=1.4e+02 Score=27.45 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=35.3
Q ss_pred EEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 10 FVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 10 il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
|.|++ =+|.|-..-++.||.+|+++|-.|+++=..++++..+.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH
Confidence 44444 34699999999999999999999999998888776544
No 403
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=27.29 E-value=5.5e+02 Score=24.41 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=32.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
+++|+++-.+..|. .+|+.|+++||.|.++.-.........
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 56888887777665 579999999999999988776554444
No 404
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=27.21 E-value=2.6e+02 Score=28.21 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=24.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|||+++-.+.. -..|++.|++-|+.+++++.+.
T Consensus 1 ~kiliiG~G~~-----~~~l~~~~~~~~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGNGGR-----EHALAWKLAQSPLVKYVYVAPG 33 (423)
T ss_pred CEEEEECCChH-----HHHHHHHHHhCCCccEEEEECC
Confidence 57888865555 3478888888888877776654
No 405
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.03 E-value=79 Score=31.15 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.6
Q ss_pred CcCCHHHHHHHHHHHHh-CCCeEEEEeCC
Q 011142 17 AQGHMIPMIDIARLLAQ-RGVIITIVTTP 44 (492)
Q Consensus 17 ~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~ 44 (492)
=+|++-.+..||++|++ +|++|.+-+..
T Consensus 10 NyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 10 NYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred CCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 38999999999999998 59999999875
No 406
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=27.00 E-value=2.7e+02 Score=25.18 Aligned_cols=47 Identities=6% Similarity=-0.050 Sum_probs=33.8
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhhhHHH
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFNGILA 55 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~~~~~ 55 (492)
-+++.-.++.|-..-.+.++.+-+++ |..|.+++.+...+.+.+...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMK 68 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH
Confidence 35666678899999999988777777 999999998776665555443
No 407
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=26.97 E-value=1e+02 Score=31.46 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
..+.+++++ .++|+||.... ...+|+.+|||++.+
T Consensus 363 ~~l~~~i~~--~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 EDLEDLACA--AGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHHhh--cCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 466778877 78999998854 567899999999874
No 408
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=26.94 E-value=2.4e+02 Score=27.70 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
.++..+++. -|++|+... +...+|..+|+|+|.++..
T Consensus 254 ~el~ali~~----a~l~v~nDS--Gp~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 254 PELGALIDH----AQLFIGVDS--APAHIAAAVNTPLICLFGA 290 (352)
T ss_pred HHHHHHHHh----CCEEEecCC--HHHHHHHHcCCCEEEEECC
Confidence 344556654 689997643 5788999999999998653
No 409
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.87 E-value=1.4e+02 Score=23.34 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=29.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+||+++|..+.|--.-....-+....+|-++++-..+
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 57899999888877766666777777788888876553
No 410
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.80 E-value=75 Score=32.28 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
..+.+++++ .+||++|.... ...+|+.+|||+..+
T Consensus 359 ~e~~~~i~~--~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 359 YELEEFVKR--LKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHH--hCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 456677787 79999999875 556899999999864
No 411
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=26.78 E-value=1.2e+02 Score=29.03 Aligned_cols=38 Identities=11% Similarity=-0.053 Sum_probs=28.5
Q ss_pred CccEEEEecCCCcC-C---HHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQG-H---MIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~G-H---~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+++||+++..+..+ | +.....+++.|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47799998865422 2 45677899999999999988753
No 412
>CHL00194 ycf39 Ycf39; Provisional
Probab=26.65 E-value=99 Score=29.80 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=24.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+++ ++.|.+- ..|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEcC
Confidence 467766 4555443 36888999999999988753
No 413
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=26.61 E-value=1.5e+02 Score=25.98 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCcEEEEcCC--CccHHHHHHHcCCCeEEE
Q 011142 107 PVENFFAQLKPRPNCIISDMC--LPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~--~~~~~~~A~~lgiP~v~~ 145 (492)
.+.+.+++ .++|.|++=.. .+.|..+|..+|+|++.+
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 55666666 68999994332 236788999999999985
No 414
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=26.50 E-value=4.9e+02 Score=27.31 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhcCCCCcEEE----EcCCCccHHHHHHHcCCCeEEEecchH
Q 011142 104 LQEPVENFFAQLKPRPNCII----SDMCLPYTAHIAGKFNIPRITFHGTCC 150 (492)
Q Consensus 104 ~~~~l~~ll~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 150 (492)
....++..++. ..+|.+| ||-..++.+++|..++||.|.++..+.
T Consensus 77 IAdsiE~~~~~--~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm 125 (535)
T TIGR00110 77 IADSVETMVNA--HRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPM 125 (535)
T ss_pred HHHHHHHHHhc--CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 33445556666 7899988 788888888899999999999876654
No 415
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=26.49 E-value=4.6e+02 Score=27.59 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHhcCCCCcEEE----EcCCCccHHHHHHHcCCCeEEEecchH
Q 011142 103 MLQEPVENFFAQLKPRPNCII----SDMCLPYTAHIAGKFNIPRITFHGTCC 150 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 150 (492)
.....++..++. ..+|.+| ||-..++.+++|..++||.|.++-.+.
T Consensus 96 liA~~iE~~~~a--~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGpm 145 (552)
T PRK00911 96 VIADSIETVVNA--HWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGPI 145 (552)
T ss_pred HHHHHHHHHhhC--CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 334445556666 7899988 788888888899999999999876653
No 416
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=26.34 E-value=4.1e+02 Score=23.73 Aligned_cols=147 Identities=10% Similarity=-0.000 Sum_probs=73.4
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCC
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHP 358 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~ 358 (492)
++.++.|..|.... ..+..|...+.++.+.- .... +.+........+.......+..-+..+
T Consensus 10 ~k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VIs-~~~~----------~~l~~l~~~~~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGGGKVAG-------RRAITLLKYGAHIVVIS-PELT----------ENLVKLVEEGKIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECCCHHHH-------HHHHHHHHCCCeEEEEc-CCCC----------HHHHHHHhCCCEEEEecCCChhhcCCc
Confidence 56677777666442 23444455566665553 2211 111111112344444444445567777
Q ss_pred CccccccccCchhhHHHHh----cCCCeeccCCccccch-----hHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 359 SIGGFLTHCGWNSTIEGVS----AGLPLLTWPLFGDQFM-----NEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 359 ~~~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~DQ~~-----na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
++ +|.--+.-.+.+.++ .++++-+ .|.+. .-+.+ ++-++-+.+..+ ++++.+ +.
T Consensus 72 dl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~---------G~sP~l-a~ 134 (202)
T PRK06718 72 FL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTD---------GASPKL-AK 134 (202)
T ss_pred eE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECC---------CCChHH-HH
Confidence 77 888777655555544 4555433 23322 22223 232333333332 111222 34
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHHHHH
Q 011142 430 DVRNAVEKLMDEGKEGEERRNRAVKLGQMANMA 462 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~ 462 (492)
.|++.|.+++ ++..+.+-+.+.++++.+++.
T Consensus 135 ~lr~~ie~~~--~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 135 KIRDELEALY--DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHc--chhHHHHHHHHHHHHHHHHHh
Confidence 5777777777 334456777777777777654
No 417
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=26.29 E-value=4.1e+02 Score=25.30 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 011142 25 IDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 25 l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.+|...|.+.||+|++++-..
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCC
Confidence 468889999999999998643
No 418
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.25 E-value=1.4e+02 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=24.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
..+|+++- .|.+. ...++.|.+.||+|+++.+.
T Consensus 13 ~~~vlVvG---GG~va--~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIG---GGKIA--YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEEC---CCHHH--HHHHHHHHhCCCEEEEEcCc
Confidence 45777773 33332 67899999999999999654
No 419
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=26.15 E-value=1.1e+02 Score=31.03 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=29.8
Q ss_pred ccEEEEecC--CCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPF--LAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~--~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.++|+.+.. ++-|-..-...||..|+.+|++|.++=.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 346555543 5799999999999999999999998844
No 420
>PRK13604 luxD acyl transferase; Provisional
Probab=26.11 E-value=1.4e+02 Score=28.72 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=28.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
+.+.+++.++..++...+..+|+.|+++|+.|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 346777777777777779999999999999887653
No 421
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=26.06 E-value=1.3e+02 Score=27.20 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=22.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+++|++.- +.|.+- ..|++.|+++||+|+.+...
T Consensus 5 ~~~ilItG--asg~iG--~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 5 GKTALVTG--ASRGIG--RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCEEEEEC--CCcHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 34565553 333332 47899999999998777654
No 422
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.92 E-value=1.4e+02 Score=25.31 Aligned_cols=74 Identities=8% Similarity=0.187 Sum_probs=51.5
Q ss_pred ccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHH
Q 011142 384 TWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAV 463 (492)
Q Consensus 384 ~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~ 463 (492)
..|....+..+|+.++ +..-+ |+. ...+.+.+.+..|+.|.- .-+-.+.+++..+.++
T Consensus 77 pyPWt~~~L~aa~el~-ee~ee--Ls~---------------deke~~~~sl~dL~~d~P---kT~vA~~rfKk~~~K~- 134 (158)
T PF10083_consen 77 PYPWTENALEAANELI-EEDEE--LSP---------------DEKEQFKESLPDLTKDTP---KTKVAATRFKKILSKA- 134 (158)
T ss_pred CCchHHHHHHHHHHHH-HHhhc--CCH---------------HHHHHHHhhhHHHhhcCC---ccHHHHHHHHHHHHHH-
Confidence 3677778888888886 32111 111 234568889999886531 6777888999998888
Q ss_pred hcCCchHHHHHHHHHHHH
Q 011142 464 QEGGSSHLNVTLVIQDIM 481 (492)
Q Consensus 464 ~~gg~~~~~~~~~~~~~~ 481 (492)
|.....++.+++-++.
T Consensus 135 --g~~v~~~~~dIlVdv~ 150 (158)
T PF10083_consen 135 --GSIVGDAIRDILVDVA 150 (158)
T ss_pred --hHHHHHHHHHHHHHHH
Confidence 7777778887777754
No 423
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.88 E-value=1.1e+02 Score=26.73 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCcc-HHHHHHHcCCCeEEEe
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPY-TAHIAGKFNIPRITFH 146 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~-~~~~A~~lgiP~v~~~ 146 (492)
.++++++ .+||+||....... ...-.+..|+|++.+.
T Consensus 52 n~E~l~~---l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~ 89 (195)
T cd01143 52 NVEKIVA---LKPDLVIVSSSSLAELLEKLKDAGIPVVVLP 89 (195)
T ss_pred CHHHHhc---cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeC
Confidence 4555555 49999998654332 3445678999988764
No 424
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=25.64 E-value=1.6e+02 Score=23.29 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=27.6
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
++.||+++|..+.|--.-.-.+-++..+.|.++.+-.
T Consensus 2 ~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 2 EKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3568999998887776666667677777888877643
No 425
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.62 E-value=1.5e+02 Score=21.79 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=27.4
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
+++...++.|-..-...||..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 345555678888899999999999999998876
No 426
>PLN02929 NADH kinase
Probab=25.52 E-value=78 Score=30.41 Aligned_cols=66 Identities=9% Similarity=0.124 Sum_probs=41.8
Q ss_pred cCCCccccccccCchhhHHHHh---cCCCeeccCCcc------ccchhHHHHHHHhccceeecccCCccccccccccccc
Q 011142 356 SHPSIGGFLTHCGWNSTIEGVS---AGLPLLTWPLFG------DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLM 426 (492)
Q Consensus 356 ~~~~~~~~ItHgG~~s~~Eal~---~GvP~v~~P~~~------DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~ 426 (492)
..+++ +|+-||-||+..+.. .++|++++=... .+..|.-.- ..-.|..- ..
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~----------------~~ 122 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC----------------AA 122 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc----------------cC
Confidence 34566 999999999999844 478998886542 122222110 11234221 26
Q ss_pred CHHHHHHHHHHHhcc
Q 011142 427 KRDDVRNAVEKLMDE 441 (492)
Q Consensus 427 ~~~~l~~ai~~ll~~ 441 (492)
+.+++.+++.++++.
T Consensus 123 ~~~~~~~~L~~il~g 137 (301)
T PLN02929 123 TAEDFEQVLDDVLFG 137 (301)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678899999999874
No 427
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=25.49 E-value=89 Score=27.36 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=31.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
...++|+-.++.|-..=..+++.++.++|+.|.|+..+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 456888888888888889999999999999999998755333
No 428
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=25.44 E-value=3.1e+02 Score=29.21 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=34.2
Q ss_pred hHHHHHHHHhcCCCCcEEE----EcCCCccHHHHHHHcCCCeEEEecchH
Q 011142 105 QEPVENFFAQLKPRPNCII----SDMCLPYTAHIAGKFNIPRITFHGTCC 150 (492)
Q Consensus 105 ~~~l~~ll~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 150 (492)
...++..++. ..+|.+| ||-..++.+++|..++||.|.+...+.
T Consensus 100 AdsiE~~~~a--~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm 147 (615)
T PRK12448 100 ADSVEYMVNA--HCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPM 147 (615)
T ss_pred HHHHHHHhhC--CCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCc
Confidence 3444556666 7899988 787888888899999999999876654
No 429
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.32 E-value=1.8e+02 Score=27.89 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=41.8
Q ss_pred CCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccC--ch
Q 011142 293 LIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCG--WN 370 (492)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG--~~ 370 (492)
.+...+..+.+++++++..|++-+|....... +. .. ...+..=.....+.|+++.++.|+| ..
T Consensus 141 ~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~-----~~---------~~-~~~p~~~~~va~~fP~l~IVl~H~G~~~p 205 (293)
T COG2159 141 PDDPRLYPIYEAAEELGVPVVIHTGAGPGGAG-----LE---------KG-HSDPLYLDDVARKFPELKIVLGHMGEDYP 205 (293)
T ss_pred CCChHHHHHHHHHHHcCCCEEEEeCCCCCCcc-----cc---------cC-CCCchHHHHHHHHCCCCcEEEEecCCCCc
Confidence 34445678999999999999997765532100 00 00 0111112344567889999999999 55
Q ss_pred hhHHH
Q 011142 371 STIEG 375 (492)
Q Consensus 371 s~~Ea 375 (492)
=..|+
T Consensus 206 ~~~~a 210 (293)
T COG2159 206 WELEA 210 (293)
T ss_pred hhHHH
Confidence 55555
No 430
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=25.31 E-value=1.8e+02 Score=25.09 Aligned_cols=46 Identities=7% Similarity=0.140 Sum_probs=33.2
Q ss_pred HhhhhHHHHHHHHhcCCCCcEEEEcCCCcc---------------HHHHHHHcCCCeEEEecc
Q 011142 101 ADMLQEPVENFFAQLKPRPNCIISDMCLPY---------------TAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 101 ~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~---------------~~~~A~~lgiP~v~~~~~ 148 (492)
.......+.+++++ .+||.++.+..++. ...++...|||+.-+.|.
T Consensus 46 l~~I~~~l~~~i~~--~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 46 LKQIYDGLSELIDE--YQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHH--hCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 33455688889988 89999998886442 124667889998876554
No 431
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.30 E-value=62 Score=24.19 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 011142 24 MIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 24 ~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+-.+.+.|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4589999999999999888754
No 432
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.18 E-value=1.1e+02 Score=28.24 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCcc--HHH-HHHHcCCCeEEEec
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPY--TAH-IAGKFNIPRITFHG 147 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~--~~~-~A~~lgiP~v~~~~ 147 (492)
.+++++. .+||+||....... ... +-+.+|+|++.+..
T Consensus 66 n~E~i~~---l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 66 NYEKIAA---LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CHHHHHh---cCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4455555 49999998755432 223 33449999988754
No 433
>PRK05541 adenylylsulfate kinase; Provisional
Probab=25.11 E-value=1.7e+02 Score=25.23 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=35.3
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++.+..-|+|.-.++.|-......|++.|...|..+.++..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 7777777777777788899999999999999988888777744
No 434
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=25.09 E-value=1.4e+02 Score=27.78 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=28.9
Q ss_pred cEEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
..|++.. -++-|-..-.-+||..|++.|++|..+=-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3455554 45699999999999999999999998743
No 435
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.07 E-value=92 Score=28.24 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCcEEEEcCCC--ccHHHHHHHcCCCeEEEecch
Q 011142 108 VENFFAQLKPRPNCIISDMCL--PYTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 149 (492)
++.+++ .+||+||..... .....-....++|++.+....
T Consensus 53 ~E~i~~---l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 53 LEAILA---LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHH---T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHHh---CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 345555 499999988776 355667788999999976554
No 436
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=25.06 E-value=98 Score=27.64 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=24.6
Q ss_pred CCCcEEE-EcCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 117 PRPNCII-SDMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
..||+|| .|+..- -+..=|..+|||.|.++-+.
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 4688877 565443 56777999999999986664
No 437
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=24.98 E-value=3.3e+02 Score=25.97 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHhcCCCCcEEEE
Q 011142 103 MLQEPVENFFAQLKPRPNCIIS 124 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~ 124 (492)
...+.+.++|++ .+||+||+
T Consensus 110 e~~~~l~~~Ir~--~~PdvViT 129 (284)
T TIGR03445 110 EAAGALVAVIRE--VRPHVVVT 129 (284)
T ss_pred HHHHHHHHHHHH--hCCcEEEe
Confidence 355778888998 89999996
No 438
>PRK10818 cell division inhibitor MinD; Provisional
Probab=24.91 E-value=1.1e+02 Score=28.56 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=29.8
Q ss_pred cEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+|++-+. -++-|-..-..+||..|+++|++|.++=...
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4554443 4579999999999999999999998886543
No 439
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.75 E-value=1.1e+02 Score=25.07 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=27.3
Q ss_pred EEEecCCC-cCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 10 FVLFPFLA-QGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 10 il~~~~~~-~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++++-.|. .-.+.-.+-+...|.++|++|++++++.
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateA 42 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEA 42 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHh
Confidence 34444554 5556667888999999999999999974
No 440
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.74 E-value=2.5e+02 Score=28.36 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEcCCCc----cHHHHH---HHcCCCeEEEecchHHHHH
Q 011142 103 MLQEPVENFFAQLKPRPNCIISDMCLP----YTAHIA---GKFNIPRITFHGTCCFCLV 154 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D~~~~----~~~~~A---~~lgiP~v~~~~~~~~~~~ 154 (492)
...+.+-+.|++ .+.|+||.-+.|. |+..++ +..|||+|.+.+..+...+
T Consensus 323 ~~g~eIa~~Lk~--dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis~t 379 (431)
T TIGR01918 323 QFAKEFVVELKQ--GGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIALT 379 (431)
T ss_pred HHHHHHHHHHHH--cCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHhhh
Confidence 445566677777 8999999887654 444444 5689999999887766643
No 441
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=24.53 E-value=90 Score=22.25 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 011142 25 IDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 25 l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+..|..|+++|++|+++-..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56789999999999999754
No 442
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=24.44 E-value=1.2e+02 Score=19.73 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 427 KRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 427 ~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
|+++|..||..+.++. -++++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHH
Confidence 4678999998888652 1566655554
No 443
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=24.44 E-value=1.6e+02 Score=26.85 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=26.2
Q ss_pred cEEEEecCC----CcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFL----AQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~----~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.||+++..+ ......=+..--..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 477777641 12234446666788999999999999854
No 444
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=24.41 E-value=1.2e+02 Score=28.47 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=29.2
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
.|.|+-=++-|-..-..+||-.|+++|++|.++=
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 5666655678999999999999999999999983
No 445
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=24.40 E-value=5.2e+02 Score=23.58 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=34.5
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
-+++.-.++.|-....+.++..+.++|..+.+++.+...+.+.+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~ 69 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIK 69 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 45666677899999988999999999999999998765544433
No 446
>PRK05246 glutathione synthetase; Provisional
Probab=24.38 E-value=1e+02 Score=29.78 Aligned_cols=39 Identities=5% Similarity=-0.144 Sum_probs=30.3
Q ss_pred ccEEEEecCCC---cCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLA---QGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~---~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.|||+|+.-|- .-.......|+++-++|||+|.++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 36888887542 3444667889999999999999999854
No 447
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=24.36 E-value=4.5e+02 Score=22.47 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCCccccccccCc------hhhHHHHhcCCCeeccCC
Q 011142 357 HPSIGGFLTHCGW------NSTIEGVSAGLPLLTWPL 387 (492)
Q Consensus 357 ~~~~~~~ItHgG~------~s~~Eal~~GvP~v~~P~ 387 (492)
.+.+ +++|.|- +++.+|...++|||++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3455 7888774 488999999999999963
No 448
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.36 E-value=1.2e+02 Score=27.77 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHc----CCCeEEEe
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKF----NIPRITFH 146 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l----giP~v~~~ 146 (492)
....+.+++ ++||++|+=.-.. .+...|+.+ |||+|.++
T Consensus 50 ~~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~ 94 (277)
T PRK00994 50 EVVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIG 94 (277)
T ss_pred HHHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEc
No 449
>PRK07576 short chain dehydrogenase; Provisional
Probab=24.33 E-value=1.4e+02 Score=27.68 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=25.5
Q ss_pred CCCCCCcc-EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQL-HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~-~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|.++++.. |.++++ ++.|.+ -..++++|+++||+|+++.-
T Consensus 1 ~~~~~~~~~k~ilIt-GasggI--G~~la~~l~~~G~~V~~~~r 41 (264)
T PRK07576 1 MTTMFDFAGKNVVVV-GGTSGI--NLGIAQAFARAGANVAVASR 41 (264)
T ss_pred CCccccCCCCEEEEE-CCCchH--HHHHHHHHHHCCCEEEEEeC
Confidence 55665532 444554 334433 34788999999999988764
No 450
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.20 E-value=5.6e+02 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=31.1
Q ss_pred EEEecCCCcCCHHHHHHHHHHH-HhCCCeEEEEeCCcchhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLL-AQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L-~~rGH~Vt~~~~~~~~~~ 49 (492)
++++-.++.|-..-+..||..+ ..+|+.|.+++...++..
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA 266 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh
Confidence 4454455799999999999876 678999999998775543
No 451
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=24.04 E-value=6.9e+02 Score=24.50 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=56.5
Q ss_pred ccEEEEecCCC-cCCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhhhhHHHhh-hhcCCceEEEEecCCccccCCCCCC
Q 011142 7 QLHFVLFPFLA-QGHMIPMIDIARLLAQRG--VIITIVTTPVNAARFNGILARA-IESGLQIKIVQFQLPCEEAGLPEGC 82 (492)
Q Consensus 7 ~~~il~~~~~~-~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~v~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~ 82 (492)
.|+++..|..- .|. .-+-.|.+.+.+.| .++.+++.+...+...+.+... ...+ .+... +. +.
T Consensus 4 ~~~~~~~p~~i~~G~-g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~--------~~-- 70 (350)
T PRK00843 4 KSHWIQLPRDVVVGH-GVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IV--------DE-- 70 (350)
T ss_pred CceEEeCCCeEEECC-CHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eC--------CC--
Confidence 45677766543 343 33556777777766 4888888876544332222211 1112 22111 10 10
Q ss_pred CccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEE-cCCC-c-cHHHHHHHcCCCeEEEecch
Q 011142 83 ENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIIS-DMCL-P-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~-D~~~-~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
... .....+.+.+++ .+.|+||+ ..-. . .+-.+|...|+|+|.+-++.
T Consensus 71 ---------~t~--------~~v~~~~~~~~~--~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 71 ---------ATM--------EEVEKVEEKAKD--VNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred ---------CCH--------HHHHHHHHHhhc--cCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCc
Confidence 000 122223444555 57899993 2222 2 44556788899999975554
No 452
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=23.97 E-value=1e+02 Score=31.18 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=29.7
Q ss_pred cEEEEecCCC--cC-CHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLA--QG-HMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~--~G-H~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
-||+++|.=+ .. -.....+|++.|.+||.+|.|+.+|-
T Consensus 307 ~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 307 HSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 5799997322 22 24578999999999999999999984
No 453
>PRK10037 cell division protein; Provisional
Probab=23.95 E-value=1.3e+02 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.033 Sum_probs=28.5
Q ss_pred EEEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPF-LAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.|.++.. ++-|-..-..+||..|+++|++|.++=.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 4555553 4689999999999999999999999843
No 454
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=23.95 E-value=1e+02 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCc---cHHHHHHHcCCCeEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLP---YTAHIAGKFNIPRIT 144 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~---~~~~~A~~lgiP~v~ 144 (492)
+.+.++.++ .++|+||+.+-.+ ...+..+..|||++-
T Consensus 52 ~~l~~~a~~--~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 52 EELADFAKE--NKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHH--TTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHH--cCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 445667777 8999999998544 446778889999873
No 455
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.86 E-value=6.5e+02 Score=24.08 Aligned_cols=49 Identities=27% Similarity=0.152 Sum_probs=34.2
Q ss_pred CeeeecCCchhh---cccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhH
Q 011142 342 GLVIWGWAPQVL---ILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNE 395 (492)
Q Consensus 342 nv~~~~~~pq~~---lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na 395 (492)
.+...+|+||.+ +|.-|++ -+-. |--|+..|..+|.|.+=-= .-|..|+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflWHI--YpQdent 290 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLWHI--YPQDENT 290 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEEEe--cCCcccc
Confidence 455678999854 8888887 3333 6679999999999986432 3344444
No 456
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=23.76 E-value=6.1e+02 Score=23.77 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCCcEEEE-cCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 117 PRPNCIIS-DMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~-D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
..||+||+ |+..- .+..=|..+|||.|.++-+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 46998884 54433 56667899999999986654
No 457
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=23.73 E-value=96 Score=30.03 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=23.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+|+-.+.. .+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 58999855543 367778889999999877664
No 458
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=23.57 E-value=80 Score=34.53 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=34.7
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+.||.|=..|+-|-.+-|+.=|++|.+.|.+|.+-.-+
T Consensus 22 klkIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~vE 59 (890)
T COG2205 22 KLKIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVVE 59 (890)
T ss_pred ceEEEeecCCCccHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 58999999999999999999999999999999987654
No 459
>PLN02285 methionyl-tRNA formyltransferase
Probab=23.51 E-value=6e+02 Score=24.85 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=22.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHh------CCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQ------RGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~------rGH~Vt~~~~~~ 45 (492)
.++|||+|+-.+.+| ....+.|.+ .+|+|..+.+..
T Consensus 4 ~~~~kI~f~Gt~~fa-----~~~L~~L~~~~~~~~~~~~iv~Vvt~~ 45 (334)
T PLN02285 4 GRKKRLVFLGTPEVA-----ATVLDALLDASQAPDSAFEVAAVVTQP 45 (334)
T ss_pred CCccEEEEEECCHHH-----HHHHHHHHhhhhccCCCCeEEEEEeCC
Confidence 468999999555433 233344444 378888877654
No 460
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=23.50 E-value=1.2e+02 Score=25.40 Aligned_cols=21 Identities=33% Similarity=0.226 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 011142 25 IDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 25 l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.-+|..|++.||+|++++...
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHCCCceEEEEccc
Confidence 357899999999999999876
No 461
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.44 E-value=1.8e+02 Score=25.74 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCcEEEEcCC--CccHHHHHHHcCCCeEEEe
Q 011142 106 EPVENFFAQLKPRPNCIISDMC--LPYTAHIAGKFNIPRITFH 146 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~--~~~~~~~A~~lgiP~v~~~ 146 (492)
..+.+.+++ .++|+|++=.. .+.|..+|..+|+|++.+.
T Consensus 40 ~~la~~~~~--~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 40 KEFARRFKD--EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 334444455 68999995332 2367789999999999853
No 462
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.37 E-value=74 Score=32.76 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=31.8
Q ss_pred CccEEEEecCCCcCCHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIP------------MIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p------------~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+..||++...|..=.+.| -.+||+++..||++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 456888887777666655 3689999999999999999864
No 463
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=23.32 E-value=1.1e+02 Score=27.47 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=24.7
Q ss_pred CCCcEEE-EcCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 117 PRPNCII-SDMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
..||+|| +|+..- -+..=|..+|||.|.++-+.
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 4788888 555433 56677999999999987664
No 464
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.31 E-value=4.8e+02 Score=22.37 Aligned_cols=140 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccc
Q 011142 283 VYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGG 362 (492)
Q Consensus 283 Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 362 (492)
|-|-+||.. +.+...+....++.++..+-..+.+-.. .|+ .+..|+-+..= .+..+
T Consensus 1 V~IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~SaHR--------tp~-----------~~~~~~~~a~~-~g~~v-- 56 (156)
T TIGR01162 1 VGIIMGSDS--DLPTMKKAADILEEFGIPYELRVVSAHR--------TPE-----------LMLEYAKEAEE-RGIKV-- 56 (156)
T ss_pred CEEEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECccc--------CHH-----------HHHHHHHHHHH-CCCeE--
Q ss_pred cccccCchhhHHHHhcC---CCeeccCC---ccccchhHHHHHHH--hc--cceeecccCCcccccccccccccCHHHHH
Q 011142 363 FLTHCGWNSTIEGVSAG---LPLLTWPL---FGDQFMNEKLVVQI--LK--IGVKVGVESPMIWGEEQKIGVLMKRDDVR 432 (492)
Q Consensus 363 ~ItHgG~~s~~Eal~~G---vP~v~~P~---~~DQ~~na~rv~e~--~G--~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 432 (492)
||.=+|...-.-++..| +|+|.+|. ..+-.+--.-.. + .| ++...-.+ ..+...++
T Consensus 57 iIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~v-qmP~gvpvatv~I~~-------------~~nAa~~A 122 (156)
T TIGR01162 57 IIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIV-QMPSGVPVATVAIGN-------------AGNAALLA 122 (156)
T ss_pred EEEeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHh-cCCCCCeeEEEEcCC-------------hhHHHHHH
Q ss_pred HHHHHHhccChhhHHHHHHHHHHHHHHHHHHhc
Q 011142 433 NAVEKLMDEGKEGEERRNRAVKLGQMANMAVQE 465 (492)
Q Consensus 433 ~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (492)
..|-.+-+. ..+++.+.+++...+.+.+
T Consensus 123 aqIl~~~d~-----~l~~kl~~~r~~~~~~v~~ 150 (156)
T TIGR01162 123 AQILGIKDP-----ELAEKLKEYRENQKEEVLK 150 (156)
T ss_pred HHHHcCCCH-----HHHHHHHHHHHHHHHHHHh
No 465
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=23.30 E-value=2.1e+02 Score=26.55 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=30.7
Q ss_pred ccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|++|.++. -++.|-......||..|+++|++|.++-..+
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~ 41 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDP 41 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 34555554 4578889999999999999999999986544
No 466
>PRK13054 lipid kinase; Reviewed
Probab=23.30 E-value=1.7e+02 Score=28.00 Aligned_cols=39 Identities=13% Similarity=-0.019 Sum_probs=29.7
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|+|++++-.|..+...-...+.+.|.++|+++.+..+..
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~ 41 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWE 41 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecC
Confidence 668888777776666667778888999999988766643
No 467
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.26 E-value=1.6e+02 Score=26.13 Aligned_cols=42 Identities=14% Similarity=0.402 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCc--EEEEcCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 106 EPVENFFAQLKPRPN--CIISDMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 106 ~~l~~ll~~~~~~pD--lvI~D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
..+.+++++ ..++ ++|...+-- .+..+|+.+|+|.|++.|..
T Consensus 47 ~~l~~~i~~--~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 47 AQLEQLIEE--LKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHh--CCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 455667777 4443 666555432 56678999999999876554
No 468
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.18 E-value=1.1e+02 Score=22.29 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 011142 23 PMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 23 p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.-+.+|..|+++|.+||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4578999999999999999864
No 469
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.17 E-value=3.4e+02 Score=27.41 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhcCCCCcEEEEcCCCc----cHHHHH---HHcCCCeEEEecchHHHHH
Q 011142 104 LQEPVENFFAQLKPRPNCIISDMCLP----YTAHIA---GKFNIPRITFHGTCCFCLV 154 (492)
Q Consensus 104 ~~~~l~~ll~~~~~~pDlvI~D~~~~----~~~~~A---~~lgiP~v~~~~~~~~~~~ 154 (492)
..+.+-+.|++ ...|+||.-+.|. |+..++ +..|||+|.+.+.......
T Consensus 324 ~g~eIa~~Lk~--dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~~ 379 (431)
T TIGR01917 324 FAKEFSKELLA--AGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIALT 379 (431)
T ss_pred HHHHHHHHHHH--cCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHHh
Confidence 45566677777 8999999887654 444444 5689999999888776643
No 470
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.12 E-value=1.4e+02 Score=27.37 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=23.9
Q ss_pred ccEEEEecCCCcCC--HHHHHHHHHHHHhC---CCeEEE
Q 011142 7 QLHFVLFPFLAQGH--MIPMIDIARLLAQR---GVIITI 40 (492)
Q Consensus 7 ~~~il~~~~~~~GH--~~p~l~LA~~L~~r---GH~Vt~ 40 (492)
|||||+.-+.-+|. .||...++++|... |++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~~~~~~~~v~~ 39 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDGRTIAGATVIS 39 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccccccCCeEEEE
Confidence 57887776655444 89999999999753 444444
No 471
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.11 E-value=2.9e+02 Score=25.96 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=31.9
Q ss_pred cEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 8 LHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 8 ~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
.|++.++ -++-|--.-...||..|++.|.+|-++=-.-..+.+..
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~ 103 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPR 103 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHH
Confidence 4444444 34588888999999999999999999855433333333
No 472
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.02 E-value=1.5e+02 Score=26.87 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=21.8
Q ss_pred ccEEEEecCCCcC--CHHHHHHHHHHHHhC
Q 011142 7 QLHFVLFPFLAQG--HMIPMIDIARLLAQR 34 (492)
Q Consensus 7 ~~~il~~~~~~~G--H~~p~l~LA~~L~~r 34 (492)
|||||+.-+.-+| ..||...++++|...
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGE 30 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccc
Confidence 5788887765544 489999999999764
No 473
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=22.98 E-value=6.3e+02 Score=24.91 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=32.3
Q ss_pred ccEEEEecCCC--cCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLA--QGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~--~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+.||+++++++ .|==+....+.+.+...|.+|.-+-..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~G 41 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNG 41 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 56899999875 777788999999999999999887654
No 474
>PLN02240 UDP-glucose 4-epimerase
Probab=22.85 E-value=1.5e+02 Score=28.81 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=23.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+++|++. ++.|.+- ..|++.|.++||+|+.+..
T Consensus 5 ~~~vlIt--GatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVT--GGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 3466654 4556553 3678999999999998863
No 475
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=22.78 E-value=92 Score=29.68 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=25.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+||.|+-.+..| .++|+.|.++||+|++..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 467777655554 48999999999999998754
No 476
>PLN02293 adenine phosphoribosyltransferase
Probab=22.77 E-value=2.3e+02 Score=25.05 Aligned_cols=41 Identities=5% Similarity=-0.120 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEcC-CC-ccHHHHHHHcCCCeEEE
Q 011142 103 MLQEPVENFFAQLKPRPNCIISDM-CL-PYTAHIAGKFNIPRITF 145 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D~-~~-~~~~~~A~~lgiP~v~~ 145 (492)
...+.+.+.+++ .++|+|++=. -- +.|..+|..+|+|++.+
T Consensus 49 ~~~~~l~~~~~~--~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 49 DTIDLFVERYRD--MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHhh--cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 344555555666 6889998532 22 26788999999998864
No 477
>PRK06703 flavodoxin; Provisional
Probab=22.77 E-value=1.5e+02 Score=24.90 Aligned_cols=37 Identities=8% Similarity=-0.106 Sum_probs=26.5
Q ss_pred ccEEEEecCCCcCCHHH-HHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIP-MIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p-~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|||++++=....|+.-- ...|++.|...|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 45666665556788775 45668888889999987654
No 478
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.70 E-value=4.1e+02 Score=25.15 Aligned_cols=112 Identities=10% Similarity=0.127 Sum_probs=55.7
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHH----hCCCCeEEEEeC-CCcchhhhhccchhhHHHHhc-CCCeeeecCCch--
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLE----ASNRPFIWVIRE-GETSKELKKWVVEDGFEERIK-GRGLVIWGWAPQ-- 351 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~----~~~~~vv~~~~~-~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq-- 351 (492)
++.|.+++........+....+.+++. +.++++++..-. ..+.. .-..+..... +..+ +...-|+
T Consensus 172 ~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~------~~~~l~~~~~~~~~i-~~~~~~~e~ 244 (298)
T TIGR03609 172 EPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLP------LARALRDQLLGPAEV-LSPLDPEEL 244 (298)
T ss_pred CCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHH------HHHHHHHhcCCCcEE-EecCCHHHH
Confidence 446777775432233333334433333 347777765422 22211 1112222221 1222 2233343
Q ss_pred hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccc
Q 011142 352 VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIG 405 (492)
Q Consensus 352 ~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G 405 (492)
..+++++++ +|+-==|+.+. |+.+|||.+++. .|. -....+ ++.|+.
T Consensus 245 ~~~i~~~~~--vI~~RlH~~I~-A~~~gvP~i~i~--y~~-K~~~~~-~~~g~~ 291 (298)
T TIGR03609 245 LGLFASARL--VIGMRLHALIL-AAAAGVPFVALS--YDP-KVRAFA-ADAGVP 291 (298)
T ss_pred HHHHhhCCE--EEEechHHHHH-HHHcCCCEEEee--ccH-HHHHHH-HHhCCC
Confidence 346788887 88755555444 888999999885 333 233334 355543
No 479
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=22.69 E-value=2.8e+02 Score=26.98 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 105 QEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 105 ~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
..++..+++. -|++|+-. .+.+.+|..+|+|.|.++..
T Consensus 251 L~el~ali~~----a~l~Vs~D--SGp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 251 LPQLAALIDH----ARLFIGVD--SVPMHMAAALGTPLVALFGP 288 (344)
T ss_pred HHHHHHHHHh----CCEEEecC--CHHHHHHHHcCCCEEEEECC
Confidence 3444556654 68999763 45788999999999998653
No 480
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=22.60 E-value=56 Score=32.78 Aligned_cols=29 Identities=38% Similarity=0.558 Sum_probs=22.3
Q ss_pred CCcCCHHHHH---HHHHHHHhCCCeEEEEeCC
Q 011142 16 LAQGHMIPMI---DIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 16 ~~~GH~~p~l---~LA~~L~~rGH~Vt~~~~~ 44 (492)
+..||+.|++ .+|+-++.+||+|.|+++-
T Consensus 14 lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGt 45 (391)
T PF09334_consen 14 LHLGHLYPYLAADVLARYLRLRGHDVLFVTGT 45 (391)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHhhcccceeeEEec
Confidence 3589999765 5688888899999999863
No 481
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=22.46 E-value=1.5e+02 Score=27.14 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=28.7
Q ss_pred EEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFL-AQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+|++.... ..|-..-.+.|++.|.++|++|.++=+
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KP 39 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKP 39 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECc
Confidence 35555544 499999999999999999999999744
No 482
>PRK13695 putative NTPase; Provisional
Probab=22.40 E-value=5e+02 Score=22.22 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=27.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEE
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIIT 39 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt 39 (492)
|||++.-.++.|=..-+..|+..|..+|+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 68999988888988888899999998898865
No 483
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=22.34 E-value=3.4e+02 Score=24.39 Aligned_cols=34 Identities=21% Similarity=0.083 Sum_probs=22.7
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|.++++ ++.|.+- ..+|+.|+++|++|.++....
T Consensus 3 k~vlIt-G~s~~iG--~~la~~l~~~g~~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVT-GAKRGIG--SAIARELLNDGYRVIATYFSG 36 (245)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHcCCEEEEEeCCc
Confidence 444554 2344433 468999999999998886553
No 484
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.28 E-value=5.1e+02 Score=22.35 Aligned_cols=129 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred cEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccccccccCcCCCcccccCCCCCCccccccccCccccchh
Q 011142 120 NCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRF 199 (492)
Q Consensus 120 DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 199 (492)
|+++.|... ...+++.+|.|.-.-.+..-+........
T Consensus 7 dlv~~DG~~--i~~~~~~~g~~~~~rv~g~dl~~~l~~~~---------------------------------------- 44 (172)
T PF03808_consen 7 DLVLPDGMP--IVWAARLLGRPLPERVTGSDLFPDLLRRA---------------------------------------- 44 (172)
T ss_pred CEEecCCHH--HHHHHHHcCCCCCcccCHHHHHHHHHHHH----------------------------------------
Q ss_pred HHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCC
Q 011142 200 NVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAP 279 (492)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 279 (492)
.......+++.+.++.-..........+ |++..+|-....-... ..+.+.+.+....+
T Consensus 45 ---------~~~~~~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~~~------------~~~~i~~~I~~~~p 102 (172)
T PF03808_consen 45 ---------EQRGKRIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFDEE------------EEEAIINRINASGP 102 (172)
T ss_pred ---------HHcCCeEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCChh------------hHHHHHHHHHHcCC
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeC
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIRE 318 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~ 318 (492)
+ +|+|++|+ +.+-.-+.+-...++..++..+|+
T Consensus 103 d-iv~vglG~-----PkQE~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 103 D-IVFVGLGA-----PKQERWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred C-EEEEECCC-----CHHHHHHHHHHHHCCCCEEEEECc
No 485
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=22.26 E-value=1.1e+02 Score=28.65 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=26.9
Q ss_pred cEEEEecCC---CcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFL---AQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+|+.|++.+ +.|-=.-.-.|+.-|..||+.|+..=-
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~ 39 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKI 39 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEE
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeee
Confidence 478888855 577777889999999999999999853
No 486
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=22.13 E-value=3.4e+02 Score=25.98 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=31.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
..|++.-.++.|-..-+..|+..|.++|+.|.++....
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34555556789999999999999999999999888654
No 487
>PRK13768 GTPase; Provisional
Probab=22.13 E-value=1.4e+02 Score=27.83 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=30.2
Q ss_pred ccEEE-EecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFV-LFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il-~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|+++. +.-.++.|-..-+..++..|++.|++|.++....
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 34444 4445568888889999999999999999987543
No 488
>PRK12827 short chain dehydrogenase; Provisional
Probab=22.04 E-value=3.3e+02 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=22.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
+++++. ++.|.+- ..||+.|+++||+|+++.
T Consensus 7 ~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 7 RRVLIT--GGSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEc
Confidence 455544 3444443 588999999999998865
No 489
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=21.94 E-value=1.1e+02 Score=24.13 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011142 22 IPMIDIARLLAQRGVIITIVTTPVNAARF 50 (492)
Q Consensus 22 ~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v 50 (492)
.|.+.|+++|.++|.+|.+.=+-......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 68999999999999998887765444433
No 490
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=21.94 E-value=1.3e+02 Score=31.80 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=47.6
Q ss_pred eCCCcCCCH-HhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeec--------CCch--hhcc
Q 011142 287 LGSLCNLIP-SQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWG--------WAPQ--VLIL 355 (492)
Q Consensus 287 ~Gs~~~~~~-~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~--------~~pq--~~lL 355 (492)
.||..+... ..-..+++.|.+.+.+.|.-+.+..... +-+.+. ..+++.... |.-. ..+-
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~------l~dal~---~~~~i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAILP------LYDALS---QSTQIRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHHHc
Confidence 344444332 2345577777777777777776654311 111111 112322211 1111 1122
Q ss_pred cCCCccccccccCc------hhhHHHHhcCCCeeccC
Q 011142 356 SHPSIGGFLTHCGW------NSTIEGVSAGLPLLTWP 386 (492)
Q Consensus 356 ~~~~~~~~ItHgG~------~s~~Eal~~GvP~v~~P 386 (492)
..+.+ +++|.|- +++.||-..++|+|++-
T Consensus 75 g~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34455 7877664 48999999999999985
No 491
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=21.93 E-value=7.8e+02 Score=26.66 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCcEEEEcCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 108 VENFFAQLKPRPNCIISDMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
+.+.+++ .+||++|+=.+.. -...+-......++-+.++.
T Consensus 67 ~~~~l~~--~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~sl 107 (660)
T PRK08125 67 WVERIRE--LAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSL 107 (660)
T ss_pred HHHHHHh--cCCCEEEEccccccCCHHHHhhcCCCEEEEeCCc
Confidence 3455677 7999999765432 33344455555567666663
No 492
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=21.74 E-value=1.4e+02 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=29.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++||+++-.+..| +++|+.|.++|++|++.-...
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~ 40 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRP 40 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCC
Confidence 7899999888777 899999999999999987543
No 493
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.73 E-value=1.7e+02 Score=28.19 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHH
Q 011142 295 PSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIE 374 (492)
Q Consensus 295 ~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~E 374 (492)
.+.+..+.+.+++.+.++.+....... .+. .... ......+++ +|+-||-||+.+
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~~~~~~--------~~~--------------~~~~-~~~~~~~d~--vi~~GGDGT~l~ 72 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGPSGPKD--------NPY--------------PVFL-ASASELIDL--AIVLGGDGTVLA 72 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCchhh--------ccc--------------cchh-hccccCcCE--EEEECCcHHHHH
Q ss_pred HHhc----CCCeecc
Q 011142 375 GVSA----GLPLLTW 385 (492)
Q Consensus 375 al~~----GvP~v~~ 385 (492)
++.. ++|++++
T Consensus 73 ~~~~~~~~~~pv~gi 87 (305)
T PRK02645 73 AARHLAPHDIPILSV 87 (305)
T ss_pred HHHHhccCCCCEEEE
No 494
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=21.71 E-value=1.4e+02 Score=29.87 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.7
Q ss_pred CccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++++++.+. =++-|-..-..+||..|+++|++|.++=..
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 345665554 447999999999999999999999988544
No 495
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=21.70 E-value=5.3e+02 Score=22.73 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCcc-----ccCCCCCCCccccccc--
Q 011142 19 GHMIPMIDIARLLAQR-GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCE-----EAGLPEGCENLDMVAS-- 90 (492)
Q Consensus 19 GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~-----~~~l~~~~~~~~~~~~-- 90 (492)
-.+..+-.+++.+.++ |.++.+-.+.+.++.++. ..+-+..+..... +..+|..+.-....+.
T Consensus 39 ~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---------ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~ 109 (183)
T PF02056_consen 39 ERLEIVERLARRMVEEAGADLKVEATTDRREALEG---------ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETV 109 (183)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---------ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---------CCEEEEEeeecchHHHHHHHHHHHHhCCcccccccc
Confidence 3444566677777665 777777776664444432 2444444432211 1122222111110111
Q ss_pred -cchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHH---HHHHHcC-CCeEEEecchHHH
Q 011142 91 -LGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTA---HIAGKFN-IPRITFHGTCCFC 152 (492)
Q Consensus 91 -~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~---~~A~~lg-iP~v~~~~~~~~~ 152 (492)
..-+....+..+. ..++.+.+++ .-||+-|..+..+.+. .+.+.++ ++.+-++.++...
T Consensus 110 G~GG~~~alRtipv-~~~ia~~i~~--~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~ 173 (183)
T PF02056_consen 110 GPGGFFRALRTIPV-MLDIARDIEE--LCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGT 173 (183)
T ss_dssp THHHHHHHHHHHHH-HHHHHHHHHH--HTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHH
T ss_pred CccHHHHHHhhHHH-HHHHHHHHHH--hCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHH
Confidence 1111222222222 2334444555 4799999998877553 2344566 9999998886544
No 496
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=21.69 E-value=1.8e+02 Score=26.70 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=24.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.++++|+++- +.|. --..|+++|.++||+|+.++-
T Consensus 15 ~~~~~ilItG--asG~--iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 15 VKTKTVFVAG--ATGR--TGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred ccCCeEEEEC--CCcH--HHHHHHHHHHhCCCEEEEEec
Confidence 4467787774 3332 234788999999999987764
No 497
>PRK12743 oxidoreductase; Provisional
Probab=21.57 E-value=3.7e+02 Score=24.58 Aligned_cols=33 Identities=24% Similarity=0.131 Sum_probs=22.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.|.++++..+ |.+- ..+|+.|+++|++|.++..
T Consensus 2 ~k~vlItGas-~giG--~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASD-SGIG--KACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCEEEEECCC-chHH--HHHHHHHHHCCCEEEEEeC
Confidence 3455565432 3332 6799999999999987754
No 498
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.56 E-value=1.8e+02 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=28.3
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011142 17 AQGHMIPMIDIARLLAQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 17 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 49 (492)
..|....++.+++.++++|..|..+|.....+.
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 678889999999999999999999998665443
No 499
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.54 E-value=62 Score=30.51 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCCccccccccCchhhHHHHh------cCCCeeccCC
Q 011142 357 HPSIGGFLTHCGWNSTIEGVS------AGLPLLTWPL 387 (492)
Q Consensus 357 ~~~~~~~ItHgG~~s~~Eal~------~GvP~v~~P~ 387 (492)
.+++ +|+-||-||+..++. .++|++++-.
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 4566 999999999999975 4889988853
No 500
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.50 E-value=3.9e+02 Score=23.23 Aligned_cols=89 Identities=7% Similarity=0.091 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccccccccchHHHHHHHHh
Q 011142 23 PMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAAD 102 (492)
Q Consensus 23 p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (492)
-+.+-..+|+..|-.|++++. ..+.++....+.. ++.|+.- .. . .+...
T Consensus 50 e~~~W~~e~k~~gi~v~vvSN-n~e~RV~~~~~~l-----~v~fi~~----------A~--------K-P~~~~------ 98 (175)
T COG2179 50 ELRAWLAELKEAGIKVVVVSN-NKESRVARAAEKL-----GVPFIYR----------AK--------K-PFGRA------ 98 (175)
T ss_pred HHHHHHHHHHhcCCEEEEEeC-CCHHHHHhhhhhc-----CCceeec----------cc--------C-ccHHH------
Confidence 366777888888888888777 4455554433221 3333320 00 0 11112
Q ss_pred hhhHHHHHHHHhcCCC--CcEEEEcCCCccHHHHHHHcCCCeEEEecc
Q 011142 103 MLQEPVENFFAQLKPR--PNCIISDMCLPYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~--pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 148 (492)
+++.+++.+.+ =-++|.|.++. =...+...|+-+|.+-|.
T Consensus 99 -----fr~Al~~m~l~~~~vvmVGDqL~T-DVlggnr~G~~tIlV~Pl 140 (175)
T COG2179 99 -----FRRALKEMNLPPEEVVMVGDQLFT-DVLGGNRAGMRTILVEPL 140 (175)
T ss_pred -----HHHHHHHcCCChhHEEEEcchhhh-hhhcccccCcEEEEEEEe
Confidence 22333332222 24677887765 455788999999987554
Done!