Query 011142
Match_columns 492
No_of_seqs 127 out of 1240
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 21:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 2.6E-64 8.7E-69 508.1 36.6 431 6-481 12-453 (454)
2 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 2.4E-60 8.2E-65 488.7 37.2 453 1-483 1-480 (482)
3 2vch_A Hydroquinone glucosyltr 100.0 1.3E-59 4.3E-64 481.8 41.3 447 5-489 4-475 (480)
4 2c1x_A UDP-glucose flavonoid 3 100.0 7.4E-59 2.5E-63 473.1 36.5 438 1-482 1-452 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 1.7E-58 5.7E-63 471.7 37.5 438 5-481 7-462 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 9.1E-45 3.1E-49 368.1 31.4 386 4-461 9-405 (424)
7 4amg_A Snogd; transferase, pol 100.0 1.3E-43 4.4E-48 356.8 28.7 369 5-480 20-398 (400)
8 3rsc_A CALG2; TDP, enediyne, s 100.0 1.5E-40 5.1E-45 336.1 31.6 385 4-478 17-410 (415)
9 3ia7_A CALG4; glycosysltransfe 100.0 4.9E-40 1.7E-44 330.8 31.4 385 5-479 2-396 (402)
10 1iir_A Glycosyltransferase GTF 100.0 2.2E-40 7.5E-45 334.9 27.0 382 8-483 1-401 (415)
11 1rrv_A Glycosyltransferase GTF 100.0 2.8E-40 9.5E-45 334.3 21.9 383 8-483 1-402 (416)
12 3h4t_A Glycosyltransferase GTF 100.0 1.1E-40 3.9E-45 335.5 18.9 356 8-460 1-366 (404)
13 2iyf_A OLED, oleandomycin glyc 100.0 6.4E-39 2.2E-43 325.8 30.6 373 1-461 1-383 (430)
14 2yjn_A ERYCIII, glycosyltransf 100.0 5.9E-39 2E-43 327.0 21.7 386 4-481 17-434 (441)
15 2p6p_A Glycosyl transferase; X 100.0 9.5E-38 3.2E-42 312.3 25.6 364 8-483 1-380 (384)
16 4fzr_A SSFS6; structural genom 100.0 6E-36 2E-40 300.8 22.7 355 4-460 12-383 (398)
17 3oti_A CALG3; calicheamicin, T 100.0 4.8E-35 1.6E-39 294.1 27.4 363 5-480 18-395 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 3.2E-34 1.1E-38 287.4 25.6 351 7-460 1-371 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 8.1E-32 2.8E-36 271.7 28.8 354 5-460 18-391 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 4.7E-29 1.6E-33 246.9 24.9 325 8-455 3-338 (365)
21 2o6l_A UDP-glucuronosyltransfe 99.9 1.5E-26 5E-31 203.6 13.2 162 266-460 7-169 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.9 4.5E-20 1.5E-24 182.4 21.7 311 8-443 7-325 (364)
23 3hbm_A UDP-sugar hydrolase; PS 99.7 2.8E-15 9.4E-20 141.0 18.2 118 279-411 156-275 (282)
24 2jzc_A UDP-N-acetylglucosamine 99.6 7.3E-15 2.5E-19 132.5 9.8 120 278-408 26-184 (224)
25 3okp_A GDP-mannose-dependent a 99.5 3.8E-11 1.3E-15 119.2 28.4 352 4-483 1-379 (394)
26 1v4v_A UDP-N-acetylglucosamine 99.4 8.7E-12 3E-16 123.4 19.2 130 279-442 197-335 (376)
27 3c48_A Predicted glycosyltrans 99.4 1.8E-10 6.3E-15 116.2 28.6 358 4-458 17-408 (438)
28 2gek_A Phosphatidylinositol ma 99.4 4.4E-11 1.5E-15 119.3 21.6 325 5-455 18-363 (406)
29 2r60_A Glycosyl transferase, g 99.3 5.9E-10 2E-14 114.6 28.1 375 1-456 1-439 (499)
30 1vgv_A UDP-N-acetylglucosamine 99.3 4.9E-11 1.7E-15 118.2 18.7 132 279-443 204-344 (384)
31 3dzc_A UDP-N-acetylglucosamine 99.3 2.5E-10 8.5E-15 113.6 22.1 329 5-442 23-368 (396)
32 3ot5_A UDP-N-acetylglucosamine 99.3 1.3E-10 4.6E-15 115.8 19.2 321 5-442 25-362 (403)
33 2iw1_A Lipopolysaccharide core 99.3 4.1E-10 1.4E-14 110.9 21.7 147 282-458 197-354 (374)
34 3beo_A UDP-N-acetylglucosamine 99.2 1.3E-09 4.5E-14 107.4 22.6 131 279-442 204-343 (375)
35 3fro_A GLGA glycogen synthase; 99.2 5.8E-08 2E-12 97.5 33.7 112 341-483 311-430 (439)
36 2jjm_A Glycosyl transferase, g 99.2 1.2E-08 4E-13 101.4 26.7 333 7-456 15-365 (394)
37 2iuy_A Avigt4, glycosyltransfe 99.1 1.5E-09 5E-14 105.7 17.3 124 284-440 165-307 (342)
38 2x6q_A Trehalose-synthase TRET 99.1 5E-09 1.7E-13 104.9 21.3 92 340-455 292-393 (416)
39 4hwg_A UDP-N-acetylglucosamine 99.0 1E-08 3.4E-13 101.3 18.2 325 5-444 7-345 (385)
40 2vsy_A XCC0866; transferase, g 98.7 3.1E-05 1.1E-09 80.5 32.2 95 341-454 434-535 (568)
41 2qzs_A Glycogen synthase; glyc 98.6 3.4E-06 1.1E-10 86.0 22.4 130 282-443 293-446 (485)
42 3s28_A Sucrose synthase 1; gly 98.6 2.3E-06 7.8E-11 91.8 21.4 146 282-455 573-748 (816)
43 3oy2_A Glycosyltransferase B73 98.6 7.5E-06 2.6E-10 81.5 23.9 145 281-453 184-367 (413)
44 1rzu_A Glycogen synthase 1; gl 98.6 1.9E-06 6.6E-11 87.8 19.6 130 283-443 293-445 (485)
45 2xci_A KDO-transferase, 3-deox 98.4 4.1E-05 1.4E-09 75.2 23.5 98 342-460 261-364 (374)
46 2f9f_A First mannosyl transfer 98.4 2.3E-06 7.8E-11 74.6 11.0 133 283-444 25-165 (177)
47 2hy7_A Glucuronosyltransferase 98.4 6.5E-05 2.2E-09 74.7 22.8 75 340-442 264-353 (406)
48 2x0d_A WSAF; GT4 family, trans 98.1 2.7E-05 9.2E-10 77.6 14.2 79 341-442 295-380 (413)
49 3qhp_A Type 1 capsular polysac 97.8 0.00024 8E-09 60.6 12.7 144 281-457 2-156 (166)
50 3q3e_A HMW1C-like glycosyltran 97.7 0.00034 1.2E-08 71.8 13.6 151 280-453 440-600 (631)
51 4gyw_A UDP-N-acetylglucosamine 97.6 0.001 3.4E-08 71.0 15.1 149 278-449 520-676 (723)
52 2bfw_A GLGA glycogen synthase; 97.4 0.0032 1.1E-07 55.2 13.7 92 342-456 96-196 (200)
53 3tov_A Glycosyl transferase fa 97.4 0.0034 1.2E-07 60.7 14.9 107 5-145 6-116 (349)
54 1psw_A ADP-heptose LPS heptosy 97.3 0.0095 3.2E-07 57.4 17.7 104 8-145 1-107 (348)
55 3rhz_A GTF3, nucleotide sugar 96.7 0.0041 1.4E-07 59.8 8.2 111 342-480 215-337 (339)
56 2gt1_A Lipopolysaccharide hept 96.0 0.046 1.6E-06 52.0 11.4 44 8-51 1-46 (326)
57 2phj_A 5'-nucleotidase SURE; S 92.1 0.29 1E-05 44.1 6.8 40 7-48 1-40 (251)
58 3vue_A GBSS-I, granule-bound s 91.8 1.2 4.1E-05 45.4 11.9 139 279-440 326-476 (536)
59 2wqk_A 5'-nucleotidase SURE; S 91.5 0.54 1.8E-05 42.6 7.8 114 7-147 1-127 (251)
60 3fgn_A Dethiobiotin synthetase 88.5 5.7 0.00019 35.8 12.2 123 6-149 24-167 (251)
61 3qxc_A Dethiobiotin synthetase 88.3 1.4 4.6E-05 39.8 7.9 38 5-42 18-57 (242)
62 2ywr_A Phosphoribosylglycinami 87.8 7 0.00024 34.3 12.0 108 7-148 1-111 (216)
63 3auf_A Glycinamide ribonucleot 87.2 9.2 0.00031 33.9 12.5 110 5-148 20-132 (229)
64 1kjn_A MTH0777; hypotethical p 85.9 1 3.5E-05 36.5 4.8 50 1-51 1-52 (157)
65 1g5t_A COB(I)alamin adenosyltr 84.0 12 0.00042 32.1 11.3 102 7-129 28-131 (196)
66 1uqt_A Alpha, alpha-trehalose- 82.9 5.1 0.00018 40.1 9.8 109 343-483 333-454 (482)
67 3vue_A GBSS-I, granule-bound s 82.3 1 3.6E-05 45.9 4.5 40 5-44 7-52 (536)
68 3zqu_A Probable aromatic acid 82.1 1.7 5.8E-05 38.0 5.1 44 6-50 3-46 (209)
69 3q0i_A Methionyl-tRNA formyltr 81.4 18 0.00063 33.7 12.4 39 3-46 3-41 (318)
70 1j9j_A Stationary phase surviV 81.0 2.4 8.1E-05 38.1 5.8 40 8-49 1-40 (247)
71 3av3_A Phosphoribosylglycinami 80.7 20 0.00067 31.3 11.6 108 7-148 3-113 (212)
72 3iqw_A Tail-anchored protein t 80.4 11 0.00039 35.5 10.7 41 6-46 14-55 (334)
73 1ccw_A Protein (glutamate muta 79.2 4.1 0.00014 32.9 6.3 40 6-45 2-41 (137)
74 3nb0_A Glycogen [starch] synth 78.4 2.9 9.9E-05 43.5 6.1 34 353-388 514-551 (725)
75 2rjn_A Response regulator rece 77.2 22 0.00076 28.3 10.5 39 1-43 1-39 (154)
76 1mvl_A PPC decarboxylase athal 76.8 3 0.0001 36.4 5.0 44 5-50 17-60 (209)
77 2e6c_A 5'-nucleotidase SURE; S 76.7 12 0.0004 33.5 8.9 39 8-48 1-39 (244)
78 1l5x_A SurviVal protein E; str 75.9 6.7 0.00023 35.9 7.3 40 8-49 1-40 (280)
79 2v4n_A Multifunctional protein 75.8 3 0.0001 37.6 4.8 40 8-49 2-41 (254)
80 4dim_A Phosphoribosylglycinami 74.7 9.4 0.00032 36.9 8.6 37 4-45 4-40 (403)
81 3igf_A ALL4481 protein; two-do 74.6 16 0.00055 35.0 10.0 37 7-43 1-38 (374)
82 3gt7_A Sensor protein; structu 74.4 28 0.00095 27.8 10.4 38 1-42 1-38 (154)
83 2ejb_A Probable aromatic acid 74.4 4.6 0.00016 34.7 5.5 43 8-51 2-44 (189)
84 1p3y_1 MRSD protein; flavoprot 74.0 2.4 8.3E-05 36.6 3.6 47 4-51 5-51 (194)
85 1sbz_A Probable aromatic acid 73.5 3.5 0.00012 35.6 4.5 43 8-51 1-44 (197)
86 3qjg_A Epidermin biosynthesis 72.4 4.8 0.00016 34.1 5.0 43 8-51 6-48 (175)
87 3io3_A DEHA2D07832P; chaperone 70.6 14 0.00046 35.2 8.4 40 6-45 16-58 (348)
88 1jkx_A GART;, phosphoribosylgl 70.1 54 0.0019 28.4 11.8 107 8-148 1-110 (212)
89 2yxb_A Coenzyme B12-dependent 70.0 6 0.0002 32.9 5.1 40 6-45 17-56 (161)
90 3t5t_A Putative glycosyltransf 69.9 20 0.00068 35.8 9.7 110 342-483 353-473 (496)
91 4dzz_A Plasmid partitioning pr 69.8 17 0.00059 30.9 8.4 38 8-45 1-40 (206)
92 2q5c_A NTRC family transcripti 69.1 5.2 0.00018 34.6 4.6 39 109-152 135-173 (196)
93 3lqk_A Dipicolinate synthase s 68.7 5.6 0.00019 34.5 4.8 43 5-48 5-48 (201)
94 1fmt_A Methionyl-tRNA FMet for 67.8 34 0.0012 31.8 10.3 35 6-45 2-36 (314)
95 2bw0_A 10-FTHFDH, 10-formyltet 67.7 41 0.0014 31.5 10.9 106 6-149 21-131 (329)
96 3kcq_A Phosphoribosylglycinami 67.7 28 0.00097 30.3 9.1 106 3-148 4-113 (215)
97 1ys7_A Transcriptional regulat 67.0 45 0.0015 28.7 10.8 36 1-40 1-36 (233)
98 1y80_A Predicted cobalamin bin 66.9 12 0.00042 32.4 6.7 49 6-54 87-135 (210)
99 3ug7_A Arsenical pump-driving 66.1 30 0.001 32.7 9.9 47 6-53 24-71 (349)
100 4b4o_A Epimerase family protei 64.2 6.6 0.00023 36.1 4.7 32 8-43 1-32 (298)
101 4a1f_A DNAB helicase, replicat 63.3 11 0.00038 35.6 6.1 42 10-51 49-90 (338)
102 1xmp_A PURE, phosphoribosylami 62.5 33 0.0011 28.5 7.9 145 280-465 11-165 (170)
103 2i2x_B MTAC, methyltransferase 62.4 15 0.0005 33.2 6.5 39 6-44 122-160 (258)
104 3mcu_A Dipicolinate synthase, 61.5 8.9 0.0003 33.3 4.6 42 5-47 3-45 (207)
105 1g63_A Epidermin modifying enz 60.4 7.4 0.00025 33.1 3.8 42 8-50 3-44 (181)
106 1e2b_A Enzyme IIB-cellobiose; 59.2 17 0.00059 27.7 5.4 39 5-43 1-39 (106)
107 3rg8_A Phosphoribosylaminoimid 59.0 54 0.0018 26.9 8.6 139 281-463 3-150 (159)
108 3tqq_A Methionyl-tRNA formyltr 58.6 68 0.0023 29.7 10.5 35 7-46 2-36 (314)
109 2bln_A Protein YFBG; transfera 58.3 56 0.0019 30.2 9.8 40 107-148 66-106 (305)
110 3l7i_A Teichoic acid biosynthe 58.2 4.7 0.00016 42.7 2.7 124 345-488 603-726 (729)
111 1qzu_A Hypothetical protein MD 58.0 9.7 0.00033 33.1 4.3 45 5-50 17-62 (206)
112 4gi5_A Quinone reductase; prot 57.8 14 0.0005 33.7 5.6 38 5-42 20-60 (280)
113 2ixd_A LMBE-related protein; h 57.0 49 0.0017 29.3 8.9 21 103-125 84-104 (242)
114 1meo_A Phosophoribosylglycinam 56.0 99 0.0034 26.6 11.2 107 8-148 1-110 (209)
115 3dhn_A NAD-dependent epimerase 55.9 9.8 0.00034 33.1 4.1 34 7-44 4-37 (227)
116 2lpm_A Two-component response 55.7 9.5 0.00032 30.0 3.5 36 109-146 46-86 (123)
117 3to5_A CHEY homolog; alpha(5)b 55.6 15 0.00052 29.3 4.8 37 111-149 52-97 (134)
118 1uan_A Hypothetical protein TT 55.1 53 0.0018 28.8 8.8 21 103-125 82-102 (227)
119 2xj4_A MIPZ; replication, cell 55.0 13 0.00045 34.0 5.0 40 6-45 2-43 (286)
120 3mc3_A DSRE/DSRF-like family p 54.5 22 0.00074 28.3 5.6 43 7-49 15-60 (134)
121 3ezx_A MMCP 1, monomethylamine 54.1 26 0.00088 30.6 6.4 45 6-50 91-135 (215)
122 3bgw_A DNAB-like replicative h 53.7 26 0.0009 34.4 7.2 43 9-51 199-241 (444)
123 3dm5_A SRP54, signal recogniti 52.9 80 0.0027 30.9 10.3 42 8-49 101-142 (443)
124 3vot_A L-amino acid ligase, BL 52.8 30 0.001 33.6 7.5 34 107-142 66-101 (425)
125 3da8_A Probable 5'-phosphoribo 52.8 52 0.0018 28.6 8.1 109 5-148 10-120 (215)
126 3gl9_A Response regulator; bet 52.1 22 0.00076 27.1 5.2 38 110-149 40-86 (122)
127 3ty2_A 5'-nucleotidase SURE; s 52.1 15 0.00052 33.1 4.6 42 5-48 9-50 (261)
128 2iz6_A Molybdenum cofactor car 52.0 32 0.0011 28.9 6.4 44 344-388 92-140 (176)
129 2vqe_B 30S ribosomal protein S 51.8 43 0.0015 30.0 7.5 33 117-149 157-191 (256)
130 2r8r_A Sensor protein; KDPD, P 51.7 22 0.00075 31.3 5.5 39 7-45 6-44 (228)
131 3gpi_A NAD-dependent epimerase 51.6 16 0.00056 33.0 5.1 34 6-44 2-35 (286)
132 3tqr_A Phosphoribosylglycinami 51.1 79 0.0027 27.4 9.0 109 6-148 4-114 (215)
133 2vo1_A CTP synthase 1; pyrimid 50.6 17 0.00059 32.7 4.6 39 5-43 20-61 (295)
134 2q6t_A DNAB replication FORK h 50.0 1.1E+02 0.0037 29.8 11.1 42 10-51 203-245 (444)
135 4ds3_A Phosphoribosylglycinami 49.7 1.1E+02 0.0037 26.4 9.6 109 5-148 5-117 (209)
136 1id1_A Putative potassium chan 49.7 13 0.00044 30.2 3.6 34 6-44 2-35 (153)
137 2a5l_A Trp repressor binding p 49.6 20 0.00068 30.5 5.0 40 5-44 3-43 (200)
138 2zki_A 199AA long hypothetical 49.3 16 0.00054 31.1 4.3 38 6-44 3-41 (199)
139 3la6_A Tyrosine-protein kinase 49.1 16 0.00056 33.4 4.6 39 7-45 91-131 (286)
140 1jx7_A Hypothetical protein YC 48.9 23 0.00079 27.0 4.8 39 8-46 2-45 (117)
141 2qs7_A Uncharacterized protein 48.7 21 0.00071 28.9 4.6 43 9-51 9-52 (144)
142 3vps_A TUNA, NAD-dependent epi 48.4 16 0.00054 33.6 4.5 40 1-44 1-40 (321)
143 1bg6_A N-(1-D-carboxylethyl)-L 48.3 11 0.00039 35.5 3.5 34 5-43 2-35 (359)
144 3kkl_A Probable chaperone prot 46.8 27 0.00093 31.1 5.5 39 6-44 2-51 (244)
145 3tov_A Glycosyl transferase fa 45.6 74 0.0025 29.8 8.8 101 8-149 186-290 (349)
146 2zts_A Putative uncharacterize 45.4 24 0.00082 31.0 5.0 44 10-53 33-77 (251)
147 1qgu_B Protein (nitrogenase mo 45.2 1.6E+02 0.0056 29.4 11.5 34 107-145 425-465 (519)
148 3kjh_A CO dehydrogenase/acetyl 45.2 15 0.00052 32.4 3.6 37 8-44 1-37 (254)
149 3g0o_A 3-hydroxyisobutyrate de 45.0 11 0.00039 34.7 2.8 38 1-43 1-38 (303)
150 3t6k_A Response regulator rece 45.0 36 0.0012 26.4 5.6 37 111-149 43-88 (136)
151 3ew7_A LMO0794 protein; Q8Y8U8 44.9 23 0.00079 30.3 4.7 33 8-44 1-33 (221)
152 1d4o_A NADP(H) transhydrogenas 44.6 28 0.00094 28.9 4.5 38 8-45 23-63 (184)
153 3n7t_A Macrophage binding prot 44.5 40 0.0014 30.1 6.2 38 7-44 9-57 (247)
154 3bbn_B Ribosomal protein S2; s 44.0 1.4E+02 0.0046 26.3 9.4 31 118-148 157-189 (231)
155 1u11_A PURE (N5-carboxyaminoim 44.0 63 0.0022 27.1 6.8 144 281-465 22-175 (182)
156 1tvm_A PTS system, galactitol- 43.5 44 0.0015 25.6 5.5 39 4-42 18-57 (113)
157 3m6m_D Sensory/regulatory prot 43.2 30 0.001 27.3 4.8 37 110-148 52-99 (143)
158 3u7q_B Nitrogenase molybdenum- 43.1 2.4E+02 0.0082 28.2 12.4 34 107-145 429-469 (523)
159 1gsa_A Glutathione synthetase; 42.7 20 0.00068 32.9 4.1 38 7-44 1-41 (316)
160 2bru_C NAD(P) transhydrogenase 42.6 31 0.0011 28.6 4.5 38 8-45 31-71 (186)
161 3l6d_A Putative oxidoreductase 42.5 14 0.00048 34.3 3.0 38 1-43 3-40 (306)
162 3f6p_A Transcriptional regulat 42.3 40 0.0014 25.4 5.3 38 110-149 40-83 (120)
163 3h2s_A Putative NADH-flavin re 42.2 27 0.00091 30.1 4.7 33 8-44 1-33 (224)
164 3ghy_A Ketopantoate reductase 41.9 14 0.00048 34.7 2.9 34 6-44 2-35 (335)
165 2ew2_A 2-dehydropantoate 2-red 41.7 16 0.00056 33.6 3.4 32 7-43 3-34 (316)
166 3q9l_A Septum site-determining 41.7 27 0.00094 30.9 4.8 39 7-45 1-41 (260)
167 1q57_A DNA primase/helicase; d 41.7 1.4E+02 0.0047 29.6 10.5 41 10-50 245-286 (503)
168 1o4v_A Phosphoribosylaminoimid 41.5 1.6E+02 0.0054 24.7 9.2 143 280-465 13-165 (183)
169 3ih5_A Electron transfer flavo 41.5 53 0.0018 28.6 6.4 110 7-145 3-121 (217)
170 1lss_A TRK system potassium up 41.2 29 0.001 27.1 4.4 33 7-44 4-36 (140)
171 1g3q_A MIND ATPase, cell divis 40.8 31 0.001 30.1 4.9 38 8-45 2-41 (237)
172 3llv_A Exopolyphosphatase-rela 40.8 13 0.00045 29.5 2.2 34 6-44 5-38 (141)
173 1evy_A Glycerol-3-phosphate de 40.7 12 0.0004 35.7 2.2 35 5-44 13-47 (366)
174 2pju_A Propionate catabolism o 40.5 8 0.00028 34.2 0.9 28 117-147 153-180 (225)
175 2hy5_A Putative sulfurtransfer 40.2 38 0.0013 26.6 4.9 38 8-45 1-42 (130)
176 2wm8_A MDP-1, magnesium-depend 40.1 1.2E+02 0.0042 24.9 8.5 22 24-45 73-94 (187)
177 3f6r_A Flavodoxin; FMN binding 39.2 31 0.0011 27.6 4.4 38 7-44 1-39 (148)
178 3goc_A Endonuclease V; alpha-b 39.1 43 0.0015 29.5 5.3 40 106-145 95-141 (237)
179 3dfz_A SIRC, precorrin-2 dehyd 39.0 94 0.0032 27.1 7.6 153 272-462 25-186 (223)
180 2w36_A Endonuclease V; hypoxan 38.9 43 0.0015 29.4 5.2 42 106-147 91-139 (225)
181 4huj_A Uncharacterized protein 38.5 17 0.00058 31.7 2.7 35 5-44 21-55 (220)
182 2g1u_A Hypothetical protein TM 38.2 34 0.0012 27.7 4.4 35 5-44 17-51 (155)
183 1rw7_A YDR533CP; alpha-beta sa 37.7 56 0.0019 28.9 6.1 39 7-45 3-52 (243)
184 3c3m_A Response regulator rece 37.6 53 0.0018 25.4 5.5 36 111-148 42-86 (138)
185 3rfo_A Methionyl-tRNA formyltr 37.2 31 0.0011 32.1 4.4 35 6-45 3-37 (317)
186 2r6j_A Eugenol synthase 1; phe 36.6 37 0.0013 31.2 4.9 33 9-45 13-45 (318)
187 3icc_A Putative 3-oxoacyl-(acy 36.6 2.1E+02 0.0072 24.8 11.1 33 9-44 8-40 (255)
188 1qyd_A Pinoresinol-lariciresin 36.3 35 0.0012 31.1 4.8 34 7-44 4-37 (313)
189 3bul_A Methionine synthase; tr 36.3 59 0.002 33.0 6.6 48 6-53 97-144 (579)
190 2l2q_A PTS system, cellobiose- 35.8 42 0.0014 25.5 4.3 36 7-42 4-39 (109)
191 2pju_A Propionate catabolism o 35.5 47 0.0016 29.1 5.1 29 358-389 64-92 (225)
192 2r6a_A DNAB helicase, replicat 35.5 1.1E+02 0.0037 30.0 8.4 43 9-51 205-248 (454)
193 3hn2_A 2-dehydropantoate 2-red 35.3 55 0.0019 30.1 5.9 33 8-45 3-35 (312)
194 3slg_A PBGP3 protein; structur 35.2 31 0.0011 32.5 4.3 36 5-44 22-58 (372)
195 2h78_A Hibadh, 3-hydroxyisobut 35.2 29 0.00099 31.8 3.9 33 6-43 2-34 (302)
196 3enk_A UDP-glucose 4-epimerase 34.8 41 0.0014 31.1 5.0 34 6-43 4-37 (341)
197 1dbw_A Transcriptional regulat 34.5 62 0.0021 24.4 5.3 38 110-149 41-85 (126)
198 1hdo_A Biliverdin IX beta redu 34.3 49 0.0017 27.7 5.1 33 8-44 4-36 (206)
199 1dhr_A Dihydropteridine reduct 34.3 43 0.0015 29.4 4.8 39 1-43 1-39 (241)
200 2q5c_A NTRC family transcripti 34.1 38 0.0013 29.0 4.2 36 357-395 51-86 (196)
201 1ydg_A Trp repressor binding p 33.9 51 0.0017 28.2 5.1 39 5-43 4-43 (211)
202 2d1p_B TUSC, hypothetical UPF0 33.8 54 0.0019 25.3 4.7 37 9-45 3-42 (119)
203 1z7e_A Protein aRNA; rossmann 33.7 91 0.0031 32.2 7.9 40 108-149 67-107 (660)
204 3tl4_X Glutaminyl-tRNA synthet 33.4 72 0.0025 27.0 5.7 69 392-480 102-177 (187)
205 3ksu_A 3-oxoacyl-acyl carrier 33.2 1.1E+02 0.0038 27.1 7.5 32 9-43 12-43 (262)
206 3nhm_A Response regulator; pro 33.1 76 0.0026 24.0 5.7 37 110-148 41-86 (133)
207 3sxp_A ADP-L-glycero-D-mannohe 33.1 52 0.0018 30.8 5.5 36 5-44 8-45 (362)
208 1xp8_A RECA protein, recombina 33.0 1.3E+02 0.0045 28.5 8.2 38 10-47 77-114 (366)
209 1pno_A NAD(P) transhydrogenase 32.9 43 0.0015 27.6 4.0 39 7-45 23-64 (180)
210 3a10_A Response regulator; pho 32.9 87 0.003 22.9 5.9 37 110-148 39-82 (116)
211 3eag_A UDP-N-acetylmuramate:L- 32.9 39 0.0013 31.5 4.4 34 6-43 3-36 (326)
212 1qyc_A Phenylcoumaran benzylic 32.9 43 0.0015 30.4 4.8 34 7-44 4-37 (308)
213 3dqp_A Oxidoreductase YLBE; al 32.9 39 0.0013 29.0 4.2 33 8-44 1-33 (219)
214 1cp2_A CP2, nitrogenase iron p 32.7 43 0.0015 29.8 4.6 35 9-43 3-37 (269)
215 1qkk_A DCTD, C4-dicarboxylate 32.6 86 0.0029 24.7 6.1 49 377-441 73-121 (155)
216 3doj_A AT3G25530, dehydrogenas 32.6 33 0.0011 31.7 3.8 34 5-43 19-52 (310)
217 1hyq_A MIND, cell division inh 32.6 47 0.0016 29.5 4.8 38 8-45 2-41 (263)
218 2b69_A UDP-glucuronate decarbo 32.5 44 0.0015 31.0 4.8 35 5-43 25-59 (343)
219 1zgz_A Torcad operon transcrip 32.4 66 0.0023 23.9 5.1 38 110-149 40-83 (122)
220 3f2v_A General stress protein 32.4 29 0.00099 29.6 3.1 36 7-42 1-37 (192)
221 2q62_A ARSH; alpha/beta, flavo 32.4 57 0.0019 29.0 5.2 40 4-43 31-73 (247)
222 3cky_A 2-hydroxymethyl glutara 32.3 34 0.0012 31.2 3.9 33 6-43 3-35 (301)
223 3obb_A Probable 3-hydroxyisobu 32.1 44 0.0015 30.8 4.5 32 7-43 3-34 (300)
224 2d1p_A TUSD, hypothetical UPF0 32.0 70 0.0024 25.6 5.2 39 7-45 12-54 (140)
225 2ph1_A Nucleotide-binding prot 31.9 48 0.0017 29.5 4.8 40 6-45 16-57 (262)
226 3eod_A Protein HNR; response r 31.9 64 0.0022 24.4 5.0 37 111-149 46-89 (130)
227 3hwr_A 2-dehydropantoate 2-red 31.5 28 0.00097 32.3 3.2 33 6-43 18-50 (318)
228 3qvo_A NMRA family protein; st 31.5 37 0.0013 29.7 3.8 34 8-44 23-57 (236)
229 3i83_A 2-dehydropantoate 2-red 31.5 62 0.0021 29.9 5.6 33 8-45 3-35 (320)
230 2gk4_A Conserved hypothetical 31.4 34 0.0012 30.2 3.5 22 24-45 32-53 (232)
231 2r85_A PURP protein PF1517; AT 31.4 44 0.0015 30.9 4.6 33 7-45 2-34 (334)
232 3pdi_B Nitrogenase MOFE cofact 31.4 38 0.0013 33.4 4.2 34 107-145 366-399 (458)
233 2c5m_A CTP synthase; cytidine 31.4 43 0.0015 30.0 4.0 37 6-42 21-60 (294)
234 3grc_A Sensor protein, kinase; 31.3 69 0.0023 24.6 5.2 37 111-149 45-90 (140)
235 3i6i_A Putative leucoanthocyan 31.1 40 0.0014 31.5 4.2 37 5-45 8-44 (346)
236 3ic5_A Putative saccharopine d 31.1 37 0.0013 25.4 3.4 33 7-44 5-38 (118)
237 4dll_A 2-hydroxy-3-oxopropiona 31.1 47 0.0016 30.8 4.6 33 6-43 30-62 (320)
238 2hy5_B Intracellular sulfur ox 31.0 54 0.0018 26.1 4.3 37 9-45 7-46 (136)
239 3qha_A Putative oxidoreductase 30.9 27 0.00092 32.0 2.9 32 7-43 15-46 (296)
240 1tmy_A CHEY protein, TMY; chem 30.9 66 0.0023 23.8 4.9 33 117-149 46-85 (120)
241 1y1p_A ARII, aldehyde reductas 30.7 63 0.0022 29.7 5.6 36 5-44 9-44 (342)
242 3nbm_A PTS system, lactose-spe 30.4 50 0.0017 25.2 3.8 38 5-42 4-41 (108)
243 4eg0_A D-alanine--D-alanine li 30.4 71 0.0024 29.4 5.8 39 7-45 13-55 (317)
244 3rpe_A MDAB, modulator of drug 30.3 59 0.002 28.3 4.8 40 4-43 22-68 (218)
245 3eod_A Protein HNR; response r 30.3 96 0.0033 23.3 5.8 39 1-43 1-39 (130)
246 3pid_A UDP-glucose 6-dehydroge 30.3 31 0.0011 33.7 3.3 35 3-43 32-66 (432)
247 2fsv_C NAD(P) transhydrogenase 30.3 52 0.0018 27.8 4.1 38 8-45 47-87 (203)
248 3ga2_A Endonuclease V; alpha-b 30.2 55 0.0019 29.0 4.5 39 107-145 98-143 (246)
249 4e12_A Diketoreductase; oxidor 30.2 39 0.0013 30.7 3.9 34 5-43 2-35 (283)
250 4e3z_A Putative oxidoreductase 30.2 1.4E+02 0.0047 26.5 7.6 34 7-43 25-58 (272)
251 3ius_A Uncharacterized conserv 30.1 44 0.0015 30.0 4.2 34 7-45 5-38 (286)
252 4e7p_A Response regulator; DNA 30.1 70 0.0024 25.1 5.1 41 107-149 57-104 (150)
253 3i42_A Response regulator rece 30.0 69 0.0024 24.1 4.9 37 110-148 41-86 (127)
254 2c20_A UDP-glucose 4-epimerase 29.9 51 0.0017 30.3 4.7 33 7-43 1-33 (330)
255 2vpq_A Acetyl-COA carboxylase; 29.7 1.8E+02 0.0062 28.1 9.0 32 8-44 2-33 (451)
256 1ihu_A Arsenical pump-driving 29.7 53 0.0018 33.5 5.2 45 1-45 1-46 (589)
257 3dfu_A Uncharacterized protein 29.7 46 0.0016 29.4 4.0 33 6-43 5-37 (232)
258 1djl_A Transhydrogenase DIII; 29.6 54 0.0018 27.8 4.1 38 8-45 46-86 (207)
259 3lyu_A Putative hydrogenase; t 29.6 41 0.0014 26.9 3.5 37 7-46 18-54 (142)
260 3b6i_A Flavoprotein WRBA; flav 29.5 59 0.002 27.3 4.7 37 7-43 1-39 (198)
261 3hv2_A Response regulator/HD d 29.5 68 0.0023 25.3 4.9 38 110-149 52-96 (153)
262 3ruf_A WBGU; rossmann fold, UD 29.4 48 0.0016 30.8 4.5 35 6-44 24-58 (351)
263 3oow_A Phosphoribosylaminoimid 29.4 2.4E+02 0.0082 23.2 9.1 144 281-465 6-159 (166)
264 2pl1_A Transcriptional regulat 29.3 1E+02 0.0035 22.7 5.7 38 110-149 38-82 (121)
265 3b2n_A Uncharacterized protein 29.3 65 0.0022 24.6 4.6 38 110-149 43-87 (133)
266 4e21_A 6-phosphogluconate dehy 29.2 29 0.001 33.0 2.8 35 4-43 19-53 (358)
267 1u0t_A Inorganic polyphosphate 29.1 50 0.0017 30.5 4.4 37 7-43 4-41 (307)
268 4da9_A Short-chain dehydrogena 28.8 1.9E+02 0.0065 25.8 8.4 32 9-43 30-61 (280)
269 2qxy_A Response regulator; reg 28.6 68 0.0023 24.7 4.7 37 110-149 42-85 (142)
270 2afh_E Nitrogenase iron protei 28.6 58 0.002 29.5 4.8 36 8-43 3-38 (289)
271 3oh8_A Nucleoside-diphosphate 28.6 55 0.0019 32.7 5.0 34 7-44 147-180 (516)
272 1xhf_A DYE resistance, aerobic 28.6 92 0.0031 23.1 5.4 37 111-149 42-84 (123)
273 3c1o_A Eugenol synthase; pheny 28.5 56 0.0019 29.9 4.7 35 7-45 4-38 (321)
274 2a9o_A Response regulator; ess 28.5 83 0.0028 23.2 5.1 33 117-149 44-82 (120)
275 1cyd_A Carbonyl reductase; sho 28.4 73 0.0025 27.7 5.3 40 1-44 1-40 (244)
276 1eiw_A Hypothetical protein MT 28.4 93 0.0032 23.8 5.1 65 355-440 36-109 (111)
277 1srr_A SPO0F, sporulation resp 28.4 66 0.0022 24.1 4.5 33 117-149 46-85 (124)
278 3h7a_A Short chain dehydrogena 28.3 1.5E+02 0.0053 25.9 7.5 32 9-43 8-39 (252)
279 2i2c_A Probable inorganic poly 28.2 22 0.00076 32.3 1.8 29 357-387 35-69 (272)
280 3bfv_A CAPA1, CAPB2, membrane 28.2 70 0.0024 28.8 5.2 40 6-45 80-121 (271)
281 2etv_A Iron(III) ABC transport 28.1 50 0.0017 31.0 4.3 36 107-145 88-124 (346)
282 3end_A Light-independent proto 28.1 65 0.0022 29.4 5.1 37 8-44 42-78 (307)
283 3hr8_A Protein RECA; alpha and 28.0 2.3E+02 0.008 26.6 8.9 38 10-47 64-101 (356)
284 2x4g_A Nucleoside-diphosphate- 28.0 61 0.0021 29.9 5.0 34 7-44 13-46 (342)
285 3zq6_A Putative arsenical pump 27.9 75 0.0025 29.5 5.5 38 8-45 14-52 (324)
286 3lrx_A Putative hydrogenase; a 27.7 44 0.0015 27.3 3.4 35 8-45 24-58 (158)
287 3mjf_A Phosphoribosylamine--gl 27.7 64 0.0022 31.4 5.1 26 6-36 2-27 (431)
288 3lte_A Response regulator; str 27.6 99 0.0034 23.3 5.5 36 111-148 45-88 (132)
289 3of5_A Dethiobiotin synthetase 27.6 72 0.0025 27.9 5.0 35 8-42 4-40 (228)
290 3f67_A Putative dienelactone h 27.5 75 0.0026 27.0 5.2 36 8-43 32-67 (241)
291 1yb4_A Tartronic semialdehyde 27.4 41 0.0014 30.5 3.5 32 6-42 2-33 (295)
292 2qzj_A Two-component response 27.4 76 0.0026 24.4 4.8 38 110-149 42-85 (136)
293 4hb9_A Similarities with proba 27.4 37 0.0013 32.2 3.4 30 8-42 2-31 (412)
294 3cg4_A Response regulator rece 27.4 96 0.0033 23.8 5.4 39 1-43 1-39 (142)
295 1ehi_A LMDDL2, D-alanine:D-lac 27.3 55 0.0019 31.2 4.5 38 6-43 2-44 (377)
296 3cg0_A Response regulator rece 27.2 78 0.0027 24.2 4.8 33 117-149 53-92 (140)
297 3edm_A Short chain dehydrogena 27.2 1.9E+02 0.0065 25.4 8.0 33 8-43 8-40 (259)
298 3i4f_A 3-oxoacyl-[acyl-carrier 27.1 1.7E+02 0.0059 25.6 7.7 35 7-44 6-40 (264)
299 3hdv_A Response regulator; PSI 27.1 91 0.0031 23.7 5.2 39 1-43 1-39 (136)
300 3u5t_A 3-oxoacyl-[acyl-carrier 27.0 1.6E+02 0.0055 26.1 7.4 33 8-43 27-59 (267)
301 3ucx_A Short chain dehydrogena 27.0 2.7E+02 0.0093 24.4 9.0 32 9-43 12-43 (264)
302 3c24_A Putative oxidoreductase 27.0 48 0.0017 30.0 3.9 32 7-43 11-43 (286)
303 1jzt_A Hypothetical 27.5 kDa p 26.9 48 0.0016 29.5 3.7 33 8-43 59-93 (246)
304 3cz5_A Two-component response 26.9 1.1E+02 0.0037 23.9 5.8 38 110-149 45-89 (153)
305 3p9x_A Phosphoribosylglycinami 26.9 3E+02 0.01 23.6 12.3 108 7-148 2-112 (211)
306 3d3j_A Enhancer of mRNA-decapp 26.9 45 0.0015 30.9 3.6 34 8-44 133-168 (306)
307 2vrn_A Protease I, DR1199; cys 26.8 1.2E+02 0.0042 25.1 6.3 40 5-45 7-46 (190)
308 3crn_A Response regulator rece 26.7 94 0.0032 23.6 5.2 38 110-149 41-85 (132)
309 1o97_C Electron transferring f 26.6 65 0.0022 29.0 4.6 41 106-148 102-148 (264)
310 1f0y_A HCDH, L-3-hydroxyacyl-C 26.5 39 0.0013 31.0 3.2 34 6-44 14-47 (302)
311 3zzm_A Bifunctional purine bio 26.5 1.4E+02 0.0048 29.6 7.1 42 6-52 8-49 (523)
312 3psh_A Protein HI_1472; substr 26.5 63 0.0022 29.8 4.7 36 108-146 77-113 (326)
313 2qr3_A Two-component system re 26.3 94 0.0032 23.7 5.2 37 111-149 42-90 (140)
314 3k96_A Glycerol-3-phosphate de 26.2 31 0.001 32.8 2.4 34 6-44 28-61 (356)
315 3pdu_A 3-hydroxyisobutyrate de 26.1 35 0.0012 31.0 2.7 32 7-43 1-32 (287)
316 3cu5_A Two component transcrip 26.1 82 0.0028 24.4 4.8 35 111-147 44-85 (141)
317 2gdz_A NAD+-dependent 15-hydro 26.0 73 0.0025 28.3 4.9 40 1-44 1-40 (267)
318 3s55_A Putative short-chain de 26.0 2.3E+02 0.0078 25.1 8.4 33 9-44 11-43 (281)
319 2z1m_A GDP-D-mannose dehydrata 25.9 63 0.0022 29.8 4.6 34 7-44 3-36 (345)
320 3ea0_A ATPase, para family; al 25.7 64 0.0022 28.0 4.4 40 6-45 2-44 (245)
321 1u94_A RECA protein, recombina 25.6 2.5E+02 0.0087 26.3 8.8 38 10-47 66-103 (356)
322 1mb3_A Cell division response 25.6 75 0.0026 23.7 4.3 36 111-148 40-84 (124)
323 3jy6_A Transcriptional regulat 25.6 3.3E+02 0.011 23.6 10.9 30 117-146 62-92 (276)
324 3rkr_A Short chain oxidoreduct 25.6 1.8E+02 0.0062 25.5 7.5 33 9-44 30-62 (262)
325 3d3k_A Enhancer of mRNA-decapp 25.5 50 0.0017 29.7 3.6 33 8-43 86-120 (259)
326 1orr_A CDP-tyvelose-2-epimeras 25.5 67 0.0023 29.6 4.7 33 7-43 1-33 (347)
327 2dpo_A L-gulonate 3-dehydrogen 25.3 35 0.0012 31.8 2.6 38 1-44 1-38 (319)
328 1byi_A Dethiobiotin synthase; 25.3 65 0.0022 27.6 4.3 32 10-41 4-36 (224)
329 2fb6_A Conserved hypothetical 25.3 83 0.0028 24.2 4.4 41 8-48 8-52 (117)
330 2rdm_A Response regulator rece 25.1 1.2E+02 0.0041 22.7 5.5 36 111-148 44-88 (132)
331 1u0t_A Inorganic polyphosphate 25.1 28 0.00097 32.2 1.9 32 354-387 72-107 (307)
332 3sju_A Keto reductase; short-c 25.1 1.8E+02 0.0063 25.8 7.5 34 8-44 24-57 (279)
333 2gas_A Isoflavone reductase; N 25.1 59 0.002 29.4 4.1 34 7-44 2-35 (307)
334 2raf_A Putative dinucleotide-b 25.0 49 0.0017 28.4 3.4 33 6-43 18-50 (209)
335 3ot1_A 4-methyl-5(B-hydroxyeth 25.0 1.1E+02 0.0039 26.0 5.7 37 7-44 9-45 (208)
336 2wm1_A 2-amino-3-carboxymucona 25.0 79 0.0027 29.2 5.1 51 268-318 127-177 (336)
337 2ywx_A Phosphoribosylaminoimid 24.9 2.8E+02 0.0096 22.6 8.4 135 283-463 2-145 (157)
338 3czc_A RMPB; alpha/beta sandwi 24.9 70 0.0024 24.3 3.8 38 6-43 17-56 (110)
339 3tjr_A Short chain dehydrogena 24.9 2.2E+02 0.0076 25.7 8.1 33 9-44 32-64 (301)
340 1efv_B Electron transfer flavo 24.8 74 0.0025 28.5 4.6 41 106-148 106-152 (255)
341 1p6q_A CHEY2; chemotaxis, sign 24.8 90 0.0031 23.4 4.7 37 110-148 45-90 (129)
342 1jbe_A Chemotaxis protein CHEY 24.8 1.2E+02 0.0039 22.7 5.3 37 110-148 43-88 (128)
343 4hn9_A Iron complex transport 24.7 54 0.0018 30.5 3.8 37 107-146 108-144 (335)
344 2pd6_A Estradiol 17-beta-dehyd 24.7 99 0.0034 27.1 5.5 40 1-44 1-40 (264)
345 3qsg_A NAD-binding phosphogluc 24.6 37 0.0013 31.4 2.6 34 5-43 22-56 (312)
346 4fbl_A LIPS lipolytic enzyme; 24.5 47 0.0016 29.7 3.3 33 11-43 54-86 (281)
347 2o8n_A APOA-I binding protein; 24.5 61 0.0021 29.2 3.9 33 8-43 80-114 (265)
348 2a33_A Hypothetical protein; s 24.5 1.1E+02 0.0037 26.6 5.4 40 5-44 11-54 (215)
349 3n53_A Response regulator rece 24.4 67 0.0023 24.8 3.9 37 110-148 40-85 (140)
350 3eul_A Possible nitrate/nitrit 24.4 81 0.0028 24.7 4.5 41 107-149 52-99 (152)
351 3cfy_A Putative LUXO repressor 24.3 87 0.003 24.1 4.6 33 117-149 47-86 (137)
352 3jte_A Response regulator rece 24.3 1.1E+02 0.0037 23.5 5.2 33 117-149 48-87 (143)
353 1yt5_A Inorganic polyphosphate 24.3 28 0.00095 31.3 1.6 30 356-387 40-72 (258)
354 3op4_A 3-oxoacyl-[acyl-carrier 24.3 96 0.0033 27.2 5.3 41 1-44 1-42 (248)
355 3d7l_A LIN1944 protein; APC893 24.3 78 0.0027 26.5 4.6 32 7-43 3-34 (202)
356 2an1_A Putative kinase; struct 24.3 33 0.0011 31.4 2.2 29 358-388 64-96 (292)
357 3l4b_C TRKA K+ channel protien 24.2 28 0.00097 30.1 1.6 32 8-44 1-32 (218)
358 3r6d_A NAD-dependent epimerase 24.2 82 0.0028 26.8 4.7 35 7-44 4-39 (221)
359 3pxx_A Carveol dehydrogenase; 24.1 2.7E+02 0.0093 24.6 8.5 32 9-43 11-42 (287)
360 1ks9_A KPA reductase;, 2-dehyd 23.9 50 0.0017 29.7 3.4 32 8-44 1-32 (291)
361 2i87_A D-alanine-D-alanine lig 23.9 38 0.0013 32.0 2.7 38 6-43 2-43 (364)
362 2jk1_A HUPR, hydrogenase trans 23.9 97 0.0033 23.8 4.8 42 106-149 34-82 (139)
363 4hcj_A THIJ/PFPI domain protei 23.8 1.2E+02 0.0041 25.2 5.5 41 4-45 4-45 (177)
364 2h31_A Multifunctional protein 23.8 2.5E+02 0.0085 27.1 8.2 141 279-463 264-413 (425)
365 1xrs_B D-lysine 5,6-aminomutas 23.7 76 0.0026 28.5 4.3 47 6-52 119-174 (262)
366 2hmt_A YUAA protein; RCK, KTN, 23.7 42 0.0014 26.2 2.5 33 7-44 6-38 (144)
367 3l4e_A Uncharacterized peptida 23.6 93 0.0032 26.7 4.8 48 268-315 16-63 (206)
368 1iow_A DD-ligase, DDLB, D-ALA\ 23.5 97 0.0033 28.0 5.3 38 7-44 2-43 (306)
369 3k9g_A PF-32 protein; ssgcid, 23.5 77 0.0026 28.1 4.5 39 6-45 25-65 (267)
370 2qyt_A 2-dehydropantoate 2-red 23.5 27 0.00091 32.2 1.4 32 7-43 8-45 (317)
371 2j48_A Two-component sensor ki 23.4 1E+02 0.0035 22.3 4.7 36 111-148 40-84 (119)
372 4e5v_A Putative THUA-like prot 23.4 95 0.0032 28.2 5.1 38 6-44 3-43 (281)
373 3rqi_A Response regulator prot 23.3 69 0.0023 26.4 3.9 38 110-149 45-89 (184)
374 1p9o_A Phosphopantothenoylcyst 23.2 44 0.0015 31.0 2.8 24 23-46 67-90 (313)
375 3fwz_A Inner membrane protein 23.1 42 0.0014 26.6 2.3 34 7-45 7-40 (140)
376 3md9_A Hemin-binding periplasm 23.1 67 0.0023 28.3 4.0 36 108-146 52-89 (255)
377 2dzd_A Pyruvate carboxylase; b 23.0 80 0.0027 30.9 4.9 39 1-45 1-39 (461)
378 1efp_B ETF, protein (electron 23.0 74 0.0025 28.4 4.2 41 106-148 103-149 (252)
379 1zi8_A Carboxymethylenebutenol 23.0 1E+02 0.0035 26.0 5.1 36 8-43 28-63 (236)
380 2q3e_A UDP-glucose 6-dehydroge 22.9 53 0.0018 32.4 3.5 35 4-43 2-38 (467)
381 2pk3_A GDP-6-deoxy-D-LYXO-4-he 22.9 82 0.0028 28.7 4.7 35 6-44 11-45 (321)
382 3pdi_A Nitrogenase MOFE cofact 22.9 60 0.002 32.2 3.9 35 106-145 391-425 (483)
383 3c97_A Signal transduction his 22.8 1.4E+02 0.0049 22.7 5.6 25 111-137 49-75 (140)
384 3orf_A Dihydropteridine reduct 22.7 81 0.0028 27.7 4.4 36 6-44 20-55 (251)
385 1mio_B Nitrogenase molybdenum 22.6 78 0.0027 31.1 4.7 34 107-145 376-409 (458)
386 1kgs_A DRRD, DNA binding respo 22.5 1.2E+02 0.0042 25.6 5.5 37 111-149 41-84 (225)
387 1t1j_A Hypothetical protein; s 22.5 1E+02 0.0036 24.1 4.4 33 7-39 7-47 (125)
388 1sb8_A WBPP; epimerase, 4-epim 22.4 78 0.0027 29.4 4.5 35 6-44 26-60 (352)
389 1t5b_A Acyl carrier protein ph 22.4 82 0.0028 26.4 4.3 37 7-43 1-43 (201)
390 1qkk_A DCTD, C4-dicarboxylate 22.4 78 0.0027 24.9 4.0 34 117-150 46-86 (155)
391 1ydh_A AT5G11950; structural g 22.2 1.3E+02 0.0044 26.1 5.5 45 6-50 8-57 (216)
392 2qv0_A Protein MRKE; structura 22.2 1.4E+02 0.0047 22.9 5.4 28 109-138 48-77 (143)
393 1z82_A Glycerol-3-phosphate de 22.2 57 0.002 30.3 3.4 33 7-44 14-46 (335)
394 3ai3_A NADPH-sorbose reductase 22.1 1.2E+02 0.0042 26.7 5.6 40 1-44 1-40 (263)
395 3l77_A Short-chain alcohol deh 22.1 88 0.003 27.0 4.5 34 8-44 2-35 (235)
396 3s40_A Diacylglycerol kinase; 22.1 1.2E+02 0.004 27.8 5.5 41 5-45 6-49 (304)
397 4dmm_A 3-oxoacyl-[acyl-carrier 22.0 2.8E+02 0.0094 24.5 8.0 33 8-43 28-60 (269)
398 3u7q_A Nitrogenase molybdenum- 22.0 61 0.0021 32.2 3.7 34 107-145 408-441 (492)
399 2q8p_A Iron-regulated surface 22.0 60 0.0021 28.7 3.5 37 108-147 53-90 (260)
400 1js1_X Transcarbamylase; alpha 21.9 76 0.0026 29.5 4.1 38 8-45 169-206 (324)
401 3lzw_A Ferredoxin--NADP reduct 21.9 35 0.0012 31.3 1.8 36 5-45 5-40 (332)
402 3trh_A Phosphoribosylaminoimid 21.8 3.4E+02 0.012 22.4 11.2 143 280-463 6-158 (169)
403 3nva_A CTP synthase; rossman f 21.8 92 0.0031 31.1 4.8 37 7-43 2-41 (535)
404 3u9l_A 3-oxoacyl-[acyl-carrier 21.7 2.1E+02 0.0071 26.3 7.3 31 9-42 6-36 (324)
405 1e4e_A Vancomycin/teicoplanin 21.7 55 0.0019 30.5 3.3 38 6-43 2-43 (343)
406 1oc2_A DTDP-glucose 4,6-dehydr 21.7 76 0.0026 29.3 4.2 33 7-43 4-38 (348)
407 4em8_A Ribose 5-phosphate isom 21.6 1.2E+02 0.0043 24.4 4.8 36 5-44 5-42 (148)
408 3uve_A Carveol dehydrogenase ( 21.6 2.3E+02 0.008 25.1 7.5 32 9-43 12-43 (286)
409 2rh8_A Anthocyanidin reductase 21.6 58 0.002 30.1 3.4 39 1-43 1-41 (338)
410 2ark_A Flavodoxin; FMN, struct 21.6 86 0.0029 26.2 4.2 40 6-45 3-44 (188)
411 3g79_A NDP-N-acetyl-D-galactos 21.5 89 0.003 30.9 4.8 35 5-44 16-52 (478)
412 3cio_A ETK, tyrosine-protein k 21.5 92 0.0032 28.5 4.7 39 7-45 103-143 (299)
413 3qvl_A Putative hydantoin race 21.5 4.1E+02 0.014 23.2 9.7 40 103-145 57-97 (245)
414 3s2u_A UDP-N-acetylglucosamine 21.4 1E+02 0.0036 28.9 5.2 26 357-384 92-120 (365)
415 2bon_A Lipid kinase; DAG kinas 21.4 98 0.0034 28.8 4.9 38 7-44 29-66 (332)
416 1oi4_A Hypothetical protein YH 21.3 1.9E+02 0.0064 24.2 6.3 39 6-45 22-60 (193)
417 3guy_A Short-chain dehydrogena 21.3 73 0.0025 27.5 3.8 34 8-44 1-34 (230)
418 1rpn_A GDP-mannose 4,6-dehydra 21.3 92 0.0031 28.5 4.7 35 6-44 13-47 (335)
419 2pn1_A Carbamoylphosphate synt 21.3 99 0.0034 28.4 5.0 34 5-44 2-37 (331)
420 3r3s_A Oxidoreductase; structu 21.3 2.1E+02 0.0073 25.7 7.2 33 9-44 50-82 (294)
421 3ko8_A NAD-dependent epimerase 21.2 87 0.003 28.3 4.5 32 8-43 1-32 (312)
422 4iiu_A 3-oxoacyl-[acyl-carrier 21.2 2.6E+02 0.009 24.5 7.7 34 8-44 26-59 (267)
423 2pnf_A 3-oxoacyl-[acyl-carrier 21.1 1.4E+02 0.0048 25.8 5.7 40 1-44 1-40 (248)
424 2wtm_A EST1E; hydrolase; 1.60A 21.1 1.2E+02 0.004 26.2 5.2 35 9-43 28-64 (251)
425 3r6w_A FMN-dependent NADH-azor 21.1 93 0.0032 26.6 4.4 37 7-43 1-43 (212)
426 3q9s_A DNA-binding response re 21.1 1.3E+02 0.0045 26.3 5.5 40 108-149 73-118 (249)
427 3li6_A Calcium-binding protein 21.1 97 0.0033 19.9 3.6 52 422-482 13-64 (66)
428 3ioy_A Short-chain dehydrogena 21.0 1.2E+02 0.0041 27.8 5.5 34 8-44 8-41 (319)
429 3pfb_A Cinnamoyl esterase; alp 21.0 1.3E+02 0.0045 25.9 5.6 37 8-44 46-84 (270)
430 2hpv_A FMN-dependent NADH-azor 21.0 86 0.0029 26.6 4.1 37 7-43 1-44 (208)
431 3sbx_A Putative uncharacterize 20.9 1.3E+02 0.0044 25.5 5.0 43 7-50 13-60 (189)
432 1fjh_A 3alpha-hydroxysteroid d 20.8 1.1E+02 0.0037 26.8 5.0 33 8-43 1-33 (257)
433 4g65_A TRK system potassium up 20.8 28 0.00096 34.4 1.0 34 6-44 2-35 (461)
434 1wrd_A TOM1, target of MYB pro 20.8 1.2E+02 0.0041 22.8 4.3 34 426-467 3-36 (103)
435 2q1w_A Putative nucleotide sug 20.7 99 0.0034 28.4 4.8 35 6-44 20-54 (333)
436 3osu_A 3-oxoacyl-[acyl-carrier 20.7 3.1E+02 0.01 23.7 7.9 33 8-43 4-36 (246)
437 3dkr_A Esterase D; alpha beta 20.6 75 0.0026 26.9 3.8 35 9-43 23-57 (251)
438 1i24_A Sulfolipid biosynthesis 20.5 88 0.003 29.6 4.5 35 5-43 9-43 (404)
439 1pzg_A LDH, lactate dehydrogen 20.5 54 0.0019 30.6 2.9 35 5-44 7-42 (331)
440 1wcv_1 SOJ, segregation protei 20.5 83 0.0029 27.8 4.1 39 7-45 5-45 (257)
441 1lld_A L-lactate dehydrogenase 20.5 53 0.0018 30.3 2.8 37 3-44 3-41 (319)
442 2z04_A Phosphoribosylaminoimid 20.4 1E+02 0.0034 28.9 4.9 34 7-45 1-34 (365)
443 3m2p_A UDP-N-acetylglucosamine 20.4 1E+02 0.0035 27.9 4.8 33 8-44 3-35 (311)
444 3ppi_A 3-hydroxyacyl-COA dehyd 20.4 1.1E+02 0.0038 27.3 5.0 34 8-44 30-63 (281)
445 3ax6_A Phosphoribosylaminoimid 20.4 1.3E+02 0.0044 28.4 5.6 34 7-45 1-34 (380)
446 2vzf_A NADH-dependent FMN redu 20.4 96 0.0033 26.1 4.2 37 7-43 2-42 (197)
447 2vns_A Metalloreductase steap3 20.3 63 0.0021 27.8 3.1 33 6-43 27-59 (215)
448 4id9_A Short-chain dehydrogena 20.3 82 0.0028 29.1 4.1 35 6-44 18-52 (347)
449 2pzm_A Putative nucleotide sug 20.2 1E+02 0.0036 28.2 4.8 34 6-43 19-52 (330)
450 4ao6_A Esterase; hydrolase, th 20.2 86 0.0029 27.6 4.1 38 8-45 56-95 (259)
451 4fs3_A Enoyl-[acyl-carrier-pro 20.2 2.4E+02 0.0083 24.7 7.2 34 9-43 7-40 (256)
452 1sqs_A Conserved hypothetical 20.1 96 0.0033 27.2 4.3 37 7-43 1-41 (242)
453 3cmw_A Protein RECA, recombina 20.0 4.7E+02 0.016 30.4 10.8 104 10-146 386-517 (1706)
454 1e6u_A GDP-fucose synthetase; 20.0 70 0.0024 29.2 3.5 33 7-43 3-35 (321)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=2.6e-64 Score=508.14 Aligned_cols=431 Identities=28% Similarity=0.451 Sum_probs=340.9
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRG--VIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
++.||+++|+|++||++|++.||+.|++|| +.|||++++.+...+.+... .....++|+.++ ++++++.+
T Consensus 12 ~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~---~~~~~i~~~~ip-----dglp~~~~ 83 (454)
T 3hbf_A 12 NLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSN---EFLPNIKYYNVH-----DGLPKGYV 83 (454)
T ss_dssp CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSS---CCCTTEEEEECC-----CCCCTTCC
T ss_pred CCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccc---cCCCCceEEecC-----CCCCCCcc
Confidence 368999999999999999999999999999 99999999765544432210 012469999886 35666554
Q ss_pred ccccccccchHHHHHHHHh-hhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccc
Q 011142 84 NLDMVASLGLAFDFFTAAD-MLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTS 162 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 162 (492)
.... ....+..+..... ...+.+.+++++.+.++|+||+|.+++|+..+|+++|||++.+++++++.+..+.+.+..
T Consensus 84 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 161 (454)
T 3hbf_A 84 SSGN--PREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLI 161 (454)
T ss_dssp CCSC--TTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHH
T ss_pred ccCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHH
Confidence 3322 1122333333333 445556666554345899999999999999999999999999999999998877765432
Q ss_pred ccc-c--cCcCCCcccccCCCCCCccccccccCcccc----chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhh
Q 011142 163 KVF-E--SVSSESEYLVVPCLPDKIEFTTQQVDSSLG----SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKI 235 (492)
Q Consensus 163 ~~~-~--~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 235 (492)
... . ..........+|+++. +..++++..++ ..+..++.+..+...+++++++||+++||+++++.+++.
T Consensus 162 ~~~~~~~~~~~~~~~~~iPg~p~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~ 238 (454)
T 3hbf_A 162 REKTGSKEVHDVKSIDVLPGFPE---LKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSK 238 (454)
T ss_dssp HHTCCHHHHTTSSCBCCSTTSCC---BCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTT
T ss_pred HhhcCCCccccccccccCCCCCC---cChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhc
Confidence 111 0 0011122234788864 67777877653 234555666667777889999999999999999988876
Q ss_pred cCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEE
Q 011142 236 RHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWV 315 (492)
Q Consensus 236 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~ 315 (492)
+ +++++|||++...... ....+.++.+||+.++++++|||||||....+.+++.+++.+++..+++|||+
T Consensus 239 ~-~~v~~vGPl~~~~~~~---------~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~ 308 (454)
T 3hbf_A 239 F-KLLLNVGPFNLTTPQR---------KVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWS 308 (454)
T ss_dssp S-SCEEECCCHHHHSCCS---------CCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_pred C-CCEEEECCcccccccc---------cccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEE
Confidence 6 7999999997543211 01135679999999888999999999999988999999999999999999999
Q ss_pred EeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhH
Q 011142 316 IREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNE 395 (492)
Q Consensus 316 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na 395 (492)
++.... .. +|++|.++. ++|+++++|+||.++|+|+++++||||||+||++|++++|||||++|+++||+.||
T Consensus 309 ~~~~~~----~~--lp~~~~~~~-~~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na 381 (454)
T 3hbf_A 309 FRGDPK----EK--LPKGFLERT-KTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNT 381 (454)
T ss_dssp CCSCHH----HH--SCTTHHHHT-TTTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHH
T ss_pred eCCcch----hc--CCHhHHhhc-CCceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHH
Confidence 976532 12 788887664 47888889999999999999888999999999999999999999999999999999
Q ss_pred HHHHHH-hccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 011142 396 KLVVQI-LKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVT 474 (492)
Q Consensus 396 ~rv~e~-~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 474 (492)
++++ + +|+|+.+... .+++++|.++|+++|+| +++++||+||++|++++++++++||||+.+++
T Consensus 382 ~~v~-~~~g~Gv~l~~~-------------~~~~~~l~~av~~ll~~-~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~ 446 (454)
T 3hbf_A 382 ILTE-SVLEIGVGVDNG-------------VLTKESIKKALELTMSS-EKGGIMRQKIVKLKESAFKAVEQNGTSAMDFT 446 (454)
T ss_dssp HHHH-TTSCSEEECGGG-------------SCCHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHH
T ss_pred HHHH-HhhCeeEEecCC-------------CCCHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 9995 7 5999999765 49999999999999976 55678999999999999999999999999999
Q ss_pred HHHHHHH
Q 011142 475 LVIQDIM 481 (492)
Q Consensus 475 ~~~~~~~ 481 (492)
+|++++.
T Consensus 447 ~~v~~i~ 453 (454)
T 3hbf_A 447 TLIQIVT 453 (454)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 2
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=2.4e-60 Score=488.70 Aligned_cols=453 Identities=26% Similarity=0.498 Sum_probs=322.0
Q ss_pred CCC-CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcC-CceEEEEecCCccccCC
Q 011142 1 MDT-QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESG-LQIKIVQFQLPCEEAGL 78 (492)
Q Consensus 1 m~~-~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~-~~i~~~~~~~~~~~~~l 78 (492)
|+. .++++||+++|+|+.||++|++.||++|++|||+|||++++.+...+.+........+ .+++|+.++. ++
T Consensus 1 ~~~~~~~~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-----~l 75 (482)
T 2pq6_A 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPD-----GL 75 (482)
T ss_dssp -------CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECC-----CC
T ss_pred CCcccCCCCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECCC-----CC
Confidence 553 3456899999999999999999999999999999999999876655543211100011 2688888862 34
Q ss_pred CCCCCccccccccchHHHHHHHH-hhhhHHHHHHHHhc-----CCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHH
Q 011142 79 PEGCENLDMVASLGLAFDFFTAA-DMLQEPVENFFAQL-----KPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFC 152 (492)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~-----~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 152 (492)
+......... .....+.... ..+.+.+++++++. ..+||+||+|.++.|+..+|+.+|||++.++++++..
T Consensus 76 p~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~ 152 (482)
T 2pq6_A 76 TPMEGDGDVS---QDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACS 152 (482)
T ss_dssp C------------CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHH
T ss_pred CCcccccCcc---hhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHH
Confidence 4310000000 1122233333 34556666666642 1589999999999999999999999999999999877
Q ss_pred HHHHhhhccc---cccccCc-----C---CCcccccCCCCCCccccccccCcccc-----chhHHHHHHhhhccCCccEE
Q 011142 153 LVCYNNLFTS---KVFESVS-----S---ESEYLVVPCLPDKIEFTTQQVDSSLG-----SRFNVFQKKMGAADTGTYGV 216 (492)
Q Consensus 153 ~~~~~~~~~~---~~~~~~~-----~---~~~~~~~p~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~ 216 (492)
...+.+.+.. ...+... . ......+|+++. +....++..+. ..+...+....+...+++++
T Consensus 153 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 229 (482)
T 2pq6_A 153 LLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKN---FRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTI 229 (482)
T ss_dssp HHHHTTHHHHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCS---CBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCE
T ss_pred HHHHHHHHHHHhcCCCCCccccccccccccCccccCCCCCC---CchHHCchhhccCCcccHHHHHHHHHHHhhccCCEE
Confidence 6655443321 1111000 0 000112344432 33334444332 12334444555667788999
Q ss_pred EEcChhhhcHHHHHHHHhhcCCcEEEeccCCCC-CcccchhhhcC--CCCCcchhhhcccccCCCCCeEEEEeeCCCcCC
Q 011142 217 IVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLS-NKEYSDKAQRG--NKASVDEHQCLKWLDSKAPKSVVYACLGSLCNL 293 (492)
Q Consensus 217 l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~-~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~ 293 (492)
++||+++||+++++.+++.+ +++++|||++.. +........+. ...+..+.++.+|+++++++++|||||||....
T Consensus 230 l~nt~~~le~~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~ 308 (482)
T 2pq6_A 230 LLNTFNELESDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVM 308 (482)
T ss_dssp EESSCGGGGHHHHHHHHTTC-TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCC
T ss_pred EEcChHHHhHHHHHHHHHhC-CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccC
Confidence 99999999999999888877 899999999753 11100000000 000112456889999887889999999999888
Q ss_pred CHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhH
Q 011142 294 IPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTI 373 (492)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~ 373 (492)
+.+.+..++.+++..+++|||+++.....+.... +|+++.++. +.|+++++|+||.++|+|+++++||||||+||++
T Consensus 309 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~-~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~ 385 (482)
T 2pq6_A 309 TPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI--FSSEFTNEI-ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTT 385 (482)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGG--SCHHHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcCCcccccccc--CcHhHHHhc-CCCEEEEeecCHHHHhcCCCCCEEEecCCcchHH
Confidence 8888999999999999999999975421111112 677776654 5799999999999999999999999999999999
Q ss_pred HHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHH
Q 011142 374 EGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 374 Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
|++++|||||++|++.||+.||+++++++|+|+.+. . .+++++|.++|+++|+|++ +++||+||+
T Consensus 386 Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~-------------~~~~~~l~~~i~~ll~~~~-~~~~r~~a~ 450 (482)
T 2pq6_A 386 ESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-T-------------NVKREELAKLINEVIAGDK-GKKMKQKAM 450 (482)
T ss_dssp HHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-S-------------SCCHHHHHHHHHHHHTSHH-HHHHHHHHH
T ss_pred HHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-C-------------CCCHHHHHHHHHHHHcCCc-HHHHHHHHH
Confidence 999999999999999999999999943799999997 3 3999999999999998764 578999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 011142 454 KLGQMANMAVQEGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 454 ~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (492)
++++++++++++|||++.++++|++++..+
T Consensus 451 ~l~~~~~~a~~~gGss~~~l~~~v~~~~~~ 480 (482)
T 2pq6_A 451 ELKKKAEENTRPGGCSYMNLNKVIKDVLLK 480 (482)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988543
No 3
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=1.3e-59 Score=481.81 Aligned_cols=447 Identities=28% Similarity=0.448 Sum_probs=325.5
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCc--chhhhhhHHHhhhhcCCceEEEEecCCccccCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPV--NAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEG 81 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 81 (492)
.+++||+++|+|+.||++|++.||++|++| ||+|||++++. +...+.+... ....+++|+.++... ++..
T Consensus 4 ~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~---~~~~~i~~~~l~~~~----~~~~ 76 (480)
T 2vch_A 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD---SLPSSISSVFLPPVD----LTDL 76 (480)
T ss_dssp --CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC----CCTTEEEEECCCCC----CTTS
T ss_pred CCCcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhcc---ccCCCceEEEcCCCC----CCCC
Confidence 346899999999999999999999999998 99999999987 3444433210 012478999887431 1111
Q ss_pred CCccccccccchHHHHHHHHhhhhHHHHHHHHhc--CCCC-cEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhh
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQEPVENFFAQL--KPRP-NCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNN 158 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 158 (492)
.. .......+......+.+.+++++++. ..++ |+||+|.++.|+..+|+.+|||++.+++++++.+..+.+
T Consensus 77 -~~-----~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~ 150 (480)
T 2vch_A 77 -SS-----STRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLH 150 (480)
T ss_dssp -CT-----TCCHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHH
T ss_pred -CC-----chhHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHH
Confidence 10 01222333344455566677777652 2478 999999998899999999999999999999877665554
Q ss_pred hccccc--cccCcCCCcccccCCCCCCccccccccCccccc---hhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHH
Q 011142 159 LFTSKV--FESVSSESEYLVVPCLPDKIEFTTQQVDSSLGS---RFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYK 233 (492)
Q Consensus 159 ~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 233 (492)
.+.... .........+..+|+++. +....++..+.. .....+....+..++.+++++|++.+||+.....+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~Pg~~p---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~ 227 (480)
T 2vch_A 151 LPKLDETVSCEFRELTEPLMLPGCVP---VAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQ 227 (480)
T ss_dssp HHHHHHHCCSCGGGCSSCBCCTTCCC---BCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccCCCCCC---CChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHH
Confidence 432110 000000011223455543 333334433311 222223333445566788999999999988777765
Q ss_pred hh---cCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCC
Q 011142 234 KI---RHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNR 310 (492)
Q Consensus 234 ~~---~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~ 310 (492)
.. + +++++|||++....... .+..+.++.+||++++++++|||||||....+.+.+.+++.+++.+++
T Consensus 228 ~~~~~~-~~v~~vGpl~~~~~~~~--------~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~ 298 (480)
T 2vch_A 228 EPGLDK-PPVYPVGPLVNIGKQEA--------KQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQ 298 (480)
T ss_dssp SCCTTC-CCEEECCCCCCCSCSCC-------------CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTC
T ss_pred hcccCC-CcEEEEecccccccccc--------CccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCC
Confidence 32 3 68999999976532100 011457899999998788999999999998889999999999999999
Q ss_pred CeEEEEeCCCcc-----------hhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcC
Q 011142 311 PFIWVIREGETS-----------KELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAG 379 (492)
Q Consensus 311 ~vv~~~~~~~~~-----------~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~G 379 (492)
+|||+++..... ...... +|+++.++....++++.+|+||.+||+|+++++||||||+||++||+++|
T Consensus 299 ~~lw~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~G 377 (480)
T 2vch_A 299 RFLWVIRSPSGIANSSYFDSHSQTDPLTF-LPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSG 377 (480)
T ss_dssp EEEEEECCCCSSTTTTTTCC--CSCGGGG-SCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHT
T ss_pred cEEEEECCccccccccccccccccchhhh-cCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcC
Confidence 999999764310 111111 88888888776777777799999999999999999999999999999999
Q ss_pred CCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Q 011142 380 LPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMA 459 (492)
Q Consensus 380 vP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~ 459 (492)
||||++|+++||+.||+++++++|+|+.+...+ ++.+++++|.++|+++|+++ ++++||+||++|++++
T Consensus 378 vP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~----------~~~~~~~~l~~av~~vl~~~-~~~~~r~~a~~l~~~~ 446 (480)
T 2vch_A 378 IPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGD----------DGLVRREEVARVVKGLMEGE-EGKGVRNKMKELKEAA 446 (480)
T ss_dssp CCEEECCCSTTHHHHHHHHHHTTCCEECCCCCT----------TSCCCHHHHHHHHHHHHTST-HHHHHHHHHHHHHHHH
T ss_pred CCEEeccccccchHHHHHHHHHhCeEEEeeccc----------CCccCHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHH
Confidence 999999999999999999635999999986531 12489999999999999743 4569999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhccccccc
Q 011142 460 NMAVQEGGSSHLNVTLVIQDIMKHVHSTSQ 489 (492)
Q Consensus 460 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 489 (492)
++++.+||++..++++|+++++. ..-|+|
T Consensus 447 ~~a~~~gGss~~~~~~~v~~~~~-~~~~~~ 475 (480)
T 2vch_A 447 CRVLKDDGTSTKALSLVALKWKA-HKKELE 475 (480)
T ss_dssp HHHTSTTSHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHH-hHHHhh
Confidence 99999999999999999999987 444444
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=7.4e-59 Score=473.07 Aligned_cols=438 Identities=25% Similarity=0.412 Sum_probs=316.5
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCe--EEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVI--ITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGL 78 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~--Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l 78 (492)
|++.++++||+++|+|+.||++|++.||+.|++|||+ |||++++.+...+.+.... ....+++++.++. ++
T Consensus 1 m~~~~~~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~--~~~~~i~~~~i~~-----gl 73 (456)
T 2c1x_A 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMH--TMQCNIKSYDISD-----GV 73 (456)
T ss_dssp ------CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC---------CTTEEEEECCC-----CC
T ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccc--cCCCceEEEeCCC-----CC
Confidence 7887788999999999999999999999999999765 5778886544333221100 0123688888752 34
Q ss_pred CCCCCccccccccchHHHHHHHHh-hhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHh
Q 011142 79 PEGCENLDMVASLGLAFDFFTAAD-MLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYN 157 (492)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 157 (492)
+++..... ........+..... ...+.+.+++++.+.+||+||+|.++.|+..+|+.+|||++.++++++..+..+.
T Consensus 74 p~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~ 151 (456)
T 2c1x_A 74 PEGYVFAG--RPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHV 151 (456)
T ss_dssp CTTCCCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHH
T ss_pred CCcccccC--ChHHHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHh
Confidence 54432111 11122233333322 2333444444332368999999999999999999999999999999877665443
Q ss_pred hhccc----cccccCcC-CCcccccCCCCCCccccccccCcccc-----chhHHHHHHhhhccCCccEEEEcChhhhcHH
Q 011142 158 NLFTS----KVFESVSS-ESEYLVVPCLPDKIEFTTQQVDSSLG-----SRFNVFQKKMGAADTGTYGVIVNSFEELEPA 227 (492)
Q Consensus 158 ~~~~~----~~~~~~~~-~~~~~~~p~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 227 (492)
+.+.. ........ .....++|+++. +....++..+. ..+..++.+..+..++++++++||+++||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~ 228 (456)
T 2c1x_A 152 YIDEIREKIGVSGIQGREDELLNFIPGMSK---VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDS 228 (456)
T ss_dssp THHHHHHHHCSSCCTTCTTCBCTTSTTCTT---CBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHH
T ss_pred hhHHHHhccCCcccccccccccccCCCCCc---ccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHH
Confidence 32211 00000011 111224566654 34444444321 2234444555555567889999999999998
Q ss_pred HHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh
Q 011142 228 YIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA 307 (492)
Q Consensus 228 ~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~ 307 (492)
+++.+++.+ +++++|||++...... ....+.++.+|++.++++++|||||||......+.+..++.+++.
T Consensus 229 ~~~~~~~~~-~~~~~vGpl~~~~~~~---------~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~ 298 (456)
T 2c1x_A 229 LTNDLKSKL-KTYLNIGPFNLITPPP---------VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEA 298 (456)
T ss_dssp HHHHHHHHS-SCEEECCCHHHHC------------------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCEEEecCcccCcccc---------cccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHh
Confidence 888887776 7899999997542210 001235688999988788999999999998888889999999999
Q ss_pred CCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCC
Q 011142 308 SNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPL 387 (492)
Q Consensus 308 ~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~ 387 (492)
.+++|||+++..... . +|+++.++. +.|+++.+|+||.++|+|+++++||||||+||++|++++|||||++|+
T Consensus 299 ~~~~~lw~~~~~~~~----~--l~~~~~~~~-~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~ 371 (456)
T 2c1x_A 299 SRVPFIWSLRDKARV----H--LPEGFLEKT-RGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPF 371 (456)
T ss_dssp HTCCEEEECCGGGGG----G--SCTTHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCC
T ss_pred cCCeEEEEECCcchh----h--CCHHHHhhc-CCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCC
Confidence 999999999765321 1 777776554 578999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHh-ccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcC
Q 011142 388 FGDQFMNEKLVVQIL-KIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEG 466 (492)
Q Consensus 388 ~~DQ~~na~rv~e~~-G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~g 466 (492)
+.||+.||++++ +. |+|+.+... .++.++|.++|+++|+|++ +++||+||+++++++++++.+|
T Consensus 372 ~~dQ~~Na~~l~-~~~g~g~~l~~~-------------~~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~~~~~a~~~g 436 (456)
T 2c1x_A 372 FGDQRLNGRMVE-DVLEIGVRIEGG-------------VFTKSGLMSCFDQILSQEK-GKKLRENLRALRETADRAVGPK 436 (456)
T ss_dssp STTHHHHHHHHH-HTSCCEEECGGG-------------SCCHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHHHHTSTT
T ss_pred hhhHHHHHHHHH-HHhCeEEEecCC-------------CcCHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999995 87 999999765 4999999999999998754 6789999999999999999999
Q ss_pred CchHHHHHHHHHHHHh
Q 011142 467 GSSHLNVTLVIQDIMK 482 (492)
Q Consensus 467 g~~~~~~~~~~~~~~~ 482 (492)
|||+.++++|++++..
T Consensus 437 GsS~~~l~~~v~~~~~ 452 (456)
T 2c1x_A 437 GSSTENFITLVDLVSK 452 (456)
T ss_dssp CHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999998853
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=1.7e-58 Score=471.72 Aligned_cols=438 Identities=25% Similarity=0.434 Sum_probs=321.6
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcch-hhhhhHHHhhhhcCCceEEEEecCCccccCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNA-ARFNGILARAIESGLQIKIVQFQLPCEEAGLPEG 81 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 81 (492)
++++||+++|+|+.||++|++.||+.|++| ||+|||++++.+. ..+.+.+......+.+++|+.++.. .++.
T Consensus 7 ~~~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~~~- 81 (463)
T 2acv_A 7 NKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEV----EPPP- 81 (463)
T ss_dssp HHCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCC----CCCC-
T ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCC----CCCc-
Confidence 456899999999999999999999999999 9999999998753 1122222221112347999988743 1222
Q ss_pred CCccccccccchHHHHHHHHhhhhHHHHHHHHhc-CCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhc
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQEPVENFFAQL-KPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLF 160 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 160 (492)
.+.. ...... +........+.+++++++. ..+||+||+|.++.|+..+|+.+|||++.++++++..+..+.+.+
T Consensus 82 ~~~~---~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~ 156 (463)
T 2acv_A 82 QELL---KSPEFY--ILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLK 156 (463)
T ss_dssp GGGG---GSHHHH--HHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGG
T ss_pred cccc---CCccHH--HHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHH
Confidence 1100 111111 4444455666777777652 258999999999889999999999999999999988877665554
Q ss_pred cccccccCcCCCc---ccccCCC-CCCccccccccCcccc--chhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHh
Q 011142 161 TSKVFESVSSESE---YLVVPCL-PDKIEFTTQQVDSSLG--SRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKK 234 (492)
Q Consensus 161 ~~~~~~~~~~~~~---~~~~p~~-~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 234 (492)
............. +..+|++ +. +....++..+. ..+...+....+..++++++++||+.+||+...+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~pg~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~ 233 (463)
T 2acv_A 157 NRQIEEVFDDSDRDHQLLNIPGISNQ---VPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYD 233 (463)
T ss_dssp GSCTTCCCCCSSGGGCEECCTTCSSC---EEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHH
T ss_pred hhcccCCCCCccccCceeECCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHh
Confidence 3221101111111 3445666 32 23333332221 11222223334455678889999999999888777766
Q ss_pred hc--CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCc-CCCHHhHHHHHHHHHhCCCC
Q 011142 235 IR--HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLC-NLIPSQMRELGLGLEASNRP 311 (492)
Q Consensus 235 ~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~-~~~~~~~~~~~~a~~~~~~~ 311 (492)
.. ++++++|||++......... ..+..+.++.+|++.++++++|||||||.. ..+.+.+.+++.+++..+++
T Consensus 234 ~~~p~~~v~~vGpl~~~~~~~~~~-----~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~ 308 (463)
T 2acv_A 234 HDEKIPPIYAVGPLLDLKGQPNPK-----LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVR 308 (463)
T ss_dssp HCTTSCCEEECCCCCCSSCCCBTT-----BCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCE
T ss_pred ccccCCcEEEeCCCcccccccccc-----cccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCc
Confidence 44 57999999997643200000 000135688999999878899999999999 78888899999999999999
Q ss_pred eEEEEeCCCcchhhhhccchhhHHHHhc-CCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccc
Q 011142 312 FIWVIREGETSKELKKWVVEDGFEERIK-GRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGD 390 (492)
Q Consensus 312 vv~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~D 390 (492)
|||+++.... . +|+++.++.. +.|+++.+|+||.++|+|+++++||||||+||++|++++|||||++|++.|
T Consensus 309 ~l~~~~~~~~-----~--l~~~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~d 381 (463)
T 2acv_A 309 FLWSNSAEKK-----V--FPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAE 381 (463)
T ss_dssp EEEECCCCGG-----G--SCTTHHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTT
T ss_pred EEEEECCCcc-----c--CChhHHHhhccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhh
Confidence 9999986410 1 6777765541 458888899999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhccceee-cccCCccccccccccc--ccCHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHhcC
Q 011142 391 QFMNEKLVVQILKIGVKV-GVESPMIWGEEQKIGV--LMKRDDVRNAVEKLMD-EGKEGEERRNRAVKLGQMANMAVQEG 466 (492)
Q Consensus 391 Q~~na~rv~e~~G~G~~l-~~~~~~~~~~~~~~~~--~~~~~~l~~ai~~ll~-~~~~~~~~~~~a~~l~~~~~~~~~~g 466 (492)
|+.||+++++++|+|+.+ ...+ .. .++.++|.++|+++|+ ++ +||+||+++++++++++.+|
T Consensus 382 Q~~Na~~lv~~~g~g~~l~~~~~----------~~~~~~~~~~l~~ai~~ll~~~~----~~r~~a~~l~~~~~~a~~~g 447 (463)
T 2acv_A 382 QQLNAFRLVKEWGVGLGLRVDYR----------KGSDVVAAEEIEKGLKDLMDKDS----IVHKKVQEMKEMSRNAVVDG 447 (463)
T ss_dssp HHHHHHHHHHTSCCEEESCSSCC----------TTCCCCCHHHHHHHHHHHTCTTC----THHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHHcCeEEEEecccC----------CCCccccHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHhcC
Confidence 999999942599999998 3110 01 4899999999999997 35 89999999999999999999
Q ss_pred CchHHHHHHHHHHHH
Q 011142 467 GSSHLNVTLVIQDIM 481 (492)
Q Consensus 467 g~~~~~~~~~~~~~~ 481 (492)
|||+.++++|++++.
T Consensus 448 Gss~~~l~~~v~~~~ 462 (463)
T 2acv_A 448 GSSLISVGKLIDDIT 462 (463)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhc
Confidence 999999999999985
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=9.1e-45 Score=368.14 Aligned_cols=386 Identities=19% Similarity=0.230 Sum_probs=263.0
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
+|+||||+|++.++.||++|+++||++|++|||+|+|++++.+.+.+.+. ++.++.++.. ++.+..
T Consensus 9 ~m~~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~---------g~~~~~~~~~-----~~~~~~ 74 (424)
T 2iya_A 9 SVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAA---------GATPVVYDSI-----LPKESN 74 (424)
T ss_dssp --CCCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH---------TCEEEECCCC-----SCCTTC
T ss_pred CcccceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhC---------CCEEEecCcc-----cccccc
Confidence 36688999999999999999999999999999999999998876655543 6788776532 222111
Q ss_pred cccccc-c-cchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcc
Q 011142 84 NLDMVA-S-LGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFT 161 (492)
Q Consensus 84 ~~~~~~-~-~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (492)
...... . ...+..+........+.+.+++++ .+||+||+|.+.+|+..+|+.+|||++.+++.+..... ......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~-~~~~~~ 151 (424)
T 2iya_A 75 PEESWPEDQESAMGLFLDEAVRVLPQLEDAYAD--DRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEG-FEEDVP 151 (424)
T ss_dssp TTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTTT--SCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTT-HHHHSG
T ss_pred chhhcchhHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccc-cccccc
Confidence 000000 0 112223333344566778888888 89999999998888999999999999999876541110 000000
Q ss_pred ccccccCcCCCcccccC-CCCCCccccccccC--ccccchhHHHHHHh------hhccCCccEEEEcChhhhcHHHHHHH
Q 011142 162 SKVFESVSSESEYLVVP-CLPDKIEFTTQQVD--SSLGSRFNVFQKKM------GAADTGTYGVIVNSFEELEPAYIKEY 232 (492)
Q Consensus 162 ~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~l~--~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~l~~~~~~~~ 232 (492)
............+ ..| +........ ...+ ..+...+...+.+. .......+.+++++.++++++
T Consensus 152 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~----- 224 (424)
T 2iya_A 152 AVQDPTADRGEEA-AAPAGTGDAEEGA-EAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIK----- 224 (424)
T ss_dssp GGSCCCC-----------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTT-----
T ss_pred ccccccccccccc-ccccccccchhhh-ccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCC-----
Confidence 0000000000000 000 000000000 0000 00001111121111 011114567889998888843
Q ss_pred HhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCe
Q 011142 233 KKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPF 312 (492)
Q Consensus 233 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~v 312 (492)
...+++++++|||+.... ....+|++..+++++|||++||......+.+..++++++..++++
T Consensus 225 ~~~~~~~~~~vGp~~~~~-----------------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~ 287 (424)
T 2iya_A 225 GDTVGDNYTFVGPTYGDR-----------------SHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHV 287 (424)
T ss_dssp GGGCCTTEEECCCCCCCC-----------------GGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEE
T ss_pred ccCCCCCEEEeCCCCCCc-----------------ccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEE
Confidence 356788999999975421 123467765556789999999998666778889999999888999
Q ss_pred EEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccc
Q 011142 313 IWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQF 392 (492)
Q Consensus 313 v~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~ 392 (492)
+|.++.....+.+.. + +.|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||.
T Consensus 288 ~~~~g~~~~~~~~~~--~---------~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~ 354 (424)
T 2iya_A 288 VLSVGRFVDPADLGE--V---------PPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQT 354 (424)
T ss_dssp EEECCTTSCGGGGCS--C---------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred EEEECCcCChHHhcc--C---------CCCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEecCccchH
Confidence 999876543222211 2 469999999999999999998 999999999999999999999999999999
Q ss_pred hhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Q 011142 393 MNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANM 461 (492)
Q Consensus 393 ~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~ 461 (492)
.||+++ ++.|+|+.+..+ .++.++|.++|+++++|+ +++++++++++.+++
T Consensus 355 ~na~~l-~~~g~g~~~~~~-------------~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~~~ 405 (424)
T 2iya_A 355 MNAERI-VELGLGRHIPRD-------------QVTAEKLREAVLAVASDP----GVAERLAAVRQEIRE 405 (424)
T ss_dssp HHHHHH-HHTTSEEECCGG-------------GCCHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHCCCEEEcCcC-------------CCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHHh
Confidence 999999 599999998765 489999999999999987 899999999998773
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=1.3e-43 Score=356.79 Aligned_cols=369 Identities=14% Similarity=0.140 Sum_probs=235.3
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccc--cCCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEE--AGLPEGC 82 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~~ 82 (492)
-+.|||||+++|+.||++|+++||++|++|||+|+|++++.+.+... .++.+..+...... ...+...
T Consensus 20 ~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~ 89 (400)
T 4amg_A 20 FQSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVAE----------AGLCAVDVSPGVNYAKLFVPDDT 89 (400)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHHT----------TTCEEEESSTTCCSHHHHSCCC-
T ss_pred CCCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHHh----------cCCeeEecCCchhHhhhcccccc
Confidence 34689999999999999999999999999999999999987655332 14666655322111 0001110
Q ss_pred Cc---ccccc--ccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHh
Q 011142 83 EN---LDMVA--SLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYN 157 (492)
Q Consensus 83 ~~---~~~~~--~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 157 (492)
.. ..... .......+..........+.+++++ .+||+||+|.+++++..+|+.+|||++.+...........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~- 166 (400)
T 4amg_A 90 DVTDPMHSEGLGEGFFAEMFARVSAVAVDGALRTARS--WRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGL- 166 (400)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHH-
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEECcchHHHHHHHHHcCCCceeecccccccccch-
Confidence 00 00000 0011122223334556677788888 8999999999999999999999999998654432111000
Q ss_pred hhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhcc-CCccEEEEcChhhhcHHHHHHHHhhc
Q 011142 158 NLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAAD-TGTYGVIVNSFEELEPAYIKEYKKIR 236 (492)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~ 236 (492)
....+..+.....+..-.. ......+......+. ...+....
T Consensus 167 ----------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 209 (400)
T 4amg_A 167 ----------------------------------GALIRRAMSKDYERHGVTGEPTGSVRLTTTPPSVE---ALLPEDRR 209 (400)
T ss_dssp ----------------------------------HHHHHHHTHHHHHHTTCCCCCSCEEEEECCCHHHH---HTSCGGGC
T ss_pred ----------------------------------hhHHHHHHHHHHHHhCCCcccccchhhcccCchhh---ccCccccc
Confidence 0000001111111111111 111112222211110 00000001
Q ss_pred CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCC--HHhHHHHHHHHHhCCCCeEE
Q 011142 237 HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLI--PSQMRELGLGLEASNRPFIW 314 (492)
Q Consensus 237 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~--~~~~~~~~~a~~~~~~~vv~ 314 (492)
.+....+.+... .....+.+|++..+++++||||+||..... .+.+..+++++++.+.++||
T Consensus 210 ~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~ 273 (400)
T 4amg_A 210 SPGAWPMRYVPY----------------NGGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVL 273 (400)
T ss_dssp CTTCEECCCCCC----------------CCCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEE
T ss_pred CCcccCcccccc----------------cccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEE
Confidence 122222222211 124456678888888999999999987643 45688899999999999999
Q ss_pred EEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchh
Q 011142 315 VIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMN 394 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~n 394 (492)
..++..... ... + ++|+++.+|+||.++|+|+++ ||||||+||++||+++|||+|++|++.||+.|
T Consensus 274 ~~~~~~~~~-~~~--~---------~~~v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~n 339 (400)
T 4amg_A 274 TLGGGDLAL-LGE--L---------PANVRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339 (400)
T ss_dssp ECCTTCCCC-CCC--C---------CTTEEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC---CHHH
T ss_pred EecCccccc-ccc--C---------CCCEEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCcccHHHH
Confidence 987654321 111 2 569999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 011142 395 EKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVT 474 (492)
Q Consensus 395 a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 474 (492)
|+++ ++.|+|+.++.. .++++ +|+++|+|+ +||++|+++++++++. .| -..+.
T Consensus 340 a~~v-~~~G~g~~l~~~-------------~~~~~----al~~lL~d~----~~r~~a~~l~~~~~~~---~~--~~~~a 392 (400)
T 4amg_A 340 RDVL-TGLGIGFDAEAG-------------SLGAE----QCRRLLDDA----GLREAALRVRQEMSEM---PP--PAETA 392 (400)
T ss_dssp HHHH-HHHTSEEECCTT-------------TCSHH----HHHHHHHCH----HHHHHHHHHHHHHHTS---CC--HHHHH
T ss_pred HHHH-HHCCCEEEcCCC-------------CchHH----HHHHHHcCH----HHHHHHHHHHHHHHcC---CC--HHHHH
Confidence 9999 599999999776 36654 667899988 9999999999998843 43 23444
Q ss_pred HHHHHH
Q 011142 475 LVIQDI 480 (492)
Q Consensus 475 ~~~~~~ 480 (492)
+.|+.+
T Consensus 393 ~~le~l 398 (400)
T 4amg_A 393 AXLVAL 398 (400)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 8
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=1.5e-40 Score=336.15 Aligned_cols=385 Identities=14% Similarity=0.153 Sum_probs=262.8
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
..+||||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+... ++.+..++.+... .....
T Consensus 17 ~~~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~---------G~~~~~~~~~~~~---~~~~~ 84 (415)
T 3rsc_A 17 GRHMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAA---------GATVVPYQSEIID---ADAAE 84 (415)
T ss_dssp --CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHT---------TCEEEECCCSTTT---CCHHH
T ss_pred cccCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhc---------CCEEEeccccccc---cccch
Confidence 35689999999999999999999999999999999999998877665543 6888877632111 00000
Q ss_pred ccccccccchHHH-HHHHHhhhhHHHHHHHHhcCCCCcEEEEc-CCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcc
Q 011142 84 NLDMVASLGLAFD-FFTAADMLQEPVENFFAQLKPRPNCIISD-MCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFT 161 (492)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~pDlvI~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (492)
..........+.. +..........+.+++++ .+||+||+| ...+++..+|+.+|||++.+.+.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~------- 155 (415)
T 3rsc_A 85 VFGSDDLGVRPHLMYLRENVSVLRATAEALDG--DVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEH------- 155 (415)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHSS--SCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSS-------
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCc-------
Confidence 0000001112222 333344556778888888 899999999 77778899999999999998754321100
Q ss_pred ccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhh------hccC-CccEEEEcChhhhcHHHHHHHHh
Q 011142 162 SKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMG------AADT-GTYGVIVNSFEELEPAYIKEYKK 234 (492)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~-~~~~~l~~~~~~l~~~~~~~~~~ 234 (492)
+...+ ...+...+..+. ....+...+..+..... .... ..+..+....+.++ .+..
T Consensus 156 ---~~~~~-~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 218 (415)
T 3rsc_A 156 ---YSFSQ-DMVTLAGTIDPL--------DLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQ-----IAGD 218 (415)
T ss_dssp ---CCHHH-HHHHHHTCCCGG--------GCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTS-----TTGG
T ss_pred ---ccccc-ccccccccCChh--------hHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccC-----CCcc
Confidence 00000 000000000000 00000011111111110 0111 12556666655554 3456
Q ss_pred hcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEE
Q 011142 235 IRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIW 314 (492)
Q Consensus 235 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~ 314 (492)
.++.++.++||+.... .+..+|....+++++||+++||......+.+..+++++.+.+.+++|
T Consensus 219 ~~~~~~~~vGp~~~~~-----------------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~ 281 (415)
T 3rsc_A 219 TFDDRFVFVGPCFDDR-----------------RFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVM 281 (415)
T ss_dssp GCCTTEEECCCCCCCC-----------------GGGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEE
T ss_pred cCCCceEEeCCCCCCc-----------------ccCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEE
Confidence 6778899999986432 23345655455678999999999877777888999999988899999
Q ss_pred EEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchh
Q 011142 315 VIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMN 394 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~n 394 (492)
.++.....+.+.. + ++|+++.+|+|+.++|+++++ ||||||.||++|++++|+|+|++|...||..|
T Consensus 282 ~~g~~~~~~~l~~--~---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~ 348 (415)
T 3rsc_A 282 TLGGQVDPAALGD--L---------PPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPM 348 (415)
T ss_dssp ECTTTSCGGGGCC--C---------CTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHH
T ss_pred EeCCCCChHHhcC--C---------CCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHH
Confidence 9876544333222 2 469999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 011142 395 EKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVT 474 (492)
Q Consensus 395 a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 474 (492)
|.++ ++.|+|+.+..+ .+++++|.++|.++++|+ +++++++++++.+.+ +++...+++
T Consensus 349 a~~l-~~~g~g~~~~~~-------------~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~~~----~~~~~~~~~ 406 (415)
T 3rsc_A 349 ARRV-DQLGLGAVLPGE-------------KADGDTLLAAVGAVAADP----ALLARVEAMRGHVRR----AGGAARAAD 406 (415)
T ss_dssp HHHH-HHHTCEEECCGG-------------GCCHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHH----SCHHHHHHH
T ss_pred HHHH-HHcCCEEEcccC-------------CCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHHh----cCHHHHHHH
Confidence 9999 599999999776 489999999999999988 899999988888763 244344444
Q ss_pred HHHH
Q 011142 475 LVIQ 478 (492)
Q Consensus 475 ~~~~ 478 (492)
.+.+
T Consensus 407 ~i~~ 410 (415)
T 3rsc_A 407 AVEA 410 (415)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 9
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=4.9e-40 Score=330.77 Aligned_cols=385 Identities=18% Similarity=0.204 Sum_probs=259.6
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
|.|+||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+... ++.+..++.+.........
T Consensus 2 m~M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~---------G~~~~~~~~~~~~~~~~~~--- 69 (402)
T 3ia7_A 2 MRQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA---------GAEVVLYKSEFDTFHVPEV--- 69 (402)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHT---------TCEEEECCCGGGTSSSSSS---
T ss_pred CCCCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHc---------CCEEEeccccccccccccc---
Confidence 4467999999999999999999999999999999999997766555432 6888877643221110000
Q ss_pred cccccccchHHH-HHHHHhhhhHHHHHHHHhcCCCCcEEEEc-CCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhccc
Q 011142 85 LDMVASLGLAFD-FFTAADMLQEPVENFFAQLKPRPNCIISD-MCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTS 162 (492)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~pDlvI~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 162 (492)
.........+.. +..........+.+++++ .+||+||+| ....++..+|+.+|||++.+.+....... +...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~-~~~~--- 143 (402)
T 3ia7_A 70 VKQEDAETQLHLVYVRENVAILRAAEEALGD--NPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEH-YSLF--- 143 (402)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTT-BCHH---
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcc-cccc---
Confidence 000001112222 333334556778888888 899999999 77778899999999999988644321100 0000
Q ss_pred cccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHh------hhccCC-ccEEEEcChhhhcHHHHHHHHhh
Q 011142 163 KVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKM------GAADTG-TYGVIVNSFEELEPAYIKEYKKI 235 (492)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~ 235 (492)
+ ...+......+. ....+...+....... ...... .+..+....++++ .+...
T Consensus 144 ------~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~ 203 (402)
T 3ia7_A 144 ------K-ELWKSNGQRHPA--------DVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQ-----PFAET 203 (402)
T ss_dssp ------H-HHHHHHTCCCGG--------GSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGS-----TTGGG
T ss_pred ------c-cccccccccChh--------hHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhC-----Ccccc
Confidence 0 000000000000 0000000111111110 001111 1445555545544 34556
Q ss_pred cCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEE
Q 011142 236 RHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWV 315 (492)
Q Consensus 236 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~ 315 (492)
++.+++++||+.... .+..+|....+++++||+++||......+.+..+++++...+.+++|.
T Consensus 204 ~~~~~~~vGp~~~~~-----------------~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (402)
T 3ia7_A 204 FDERFAFVGPTLTGR-----------------DGQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMA 266 (402)
T ss_dssp CCTTEEECCCCCCC---------------------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEE
T ss_pred CCCCeEEeCCCCCCc-----------------ccCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEE
Confidence 778899999975431 223356554556789999999998877778889999999888999999
Q ss_pred EeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCC-ccccchh
Q 011142 316 IREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPL-FGDQFMN 394 (492)
Q Consensus 316 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~-~~DQ~~n 394 (492)
++.....+.+.. .+.|+++.+|+|+.++|+++++ ||||||.||++|++++|+|+|++|. ..||..|
T Consensus 267 ~g~~~~~~~~~~-----------~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~ 333 (402)
T 3ia7_A 267 IGGFLDPAVLGP-----------LPPNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPS 333 (402)
T ss_dssp CCTTSCGGGGCS-----------CCTTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHHH
T ss_pred eCCcCChhhhCC-----------CCCcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHHH
Confidence 886544332222 2569999999999999999999 9999999999999999999999999 9999999
Q ss_pred HHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 011142 395 EKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVT 474 (492)
Q Consensus 395 a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 474 (492)
|.++ ++.|+|+.+..+ .++++.|.++|.++|+|+ +++++++++++.+.+ ++++..+++
T Consensus 334 a~~~-~~~g~g~~~~~~-------------~~~~~~l~~~~~~ll~~~----~~~~~~~~~~~~~~~----~~~~~~~~~ 391 (402)
T 3ia7_A 334 AERV-IELGLGSVLRPD-------------QLEPASIREAVERLAADS----AVRERVRRMQRDILS----SGGPARAAD 391 (402)
T ss_dssp HHHH-HHTTSEEECCGG-------------GCSHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHT----SCHHHHHHH
T ss_pred HHHH-HHcCCEEEccCC-------------CCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHhh----CChHHHHHH
Confidence 9999 599999998876 489999999999999988 889999888887652 344444444
Q ss_pred HHHHH
Q 011142 475 LVIQD 479 (492)
Q Consensus 475 ~~~~~ 479 (492)
.+.+.
T Consensus 392 ~i~~~ 396 (402)
T 3ia7_A 392 EVEAY 396 (402)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 10
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=2.2e-40 Score=334.87 Aligned_cols=382 Identities=15% Similarity=0.130 Sum_probs=249.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
|||+|++.++.||++|+++||++|++|||+|+|++++...+.+.+. ++.+..++..... .+. ....
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~---------g~~~~~i~~~~~~-~~~-~~~~--- 66 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEV---------GVPHVPVGPSARA-PIQ-RAKP--- 66 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHT---------TCCEEECCC---------CCSC---
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHc---------CCeeeeCCCCHHH-Hhh-cccc---
Confidence 6999999999999999999999999999999999998865544432 6888877643211 111 0000
Q ss_pred ccccchHHHHHHHHh-hhhHHHHHHHHhcCCCCcEEEEcC-CCcc--HHHHHHHcCCCeEEEecchHHHHHHHhhhcccc
Q 011142 88 VASLGLAFDFFTAAD-MLQEPVENFFAQLKPRPNCIISDM-CLPY--TAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSK 163 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~pDlvI~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 163 (492)
... ..+...+. .....++++.+. ..+||+||+|. +..| +..+|+.+|||++.+++++.+....
T Consensus 67 --~~~--~~~~~~~~~~~~~~~~~l~~~-~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~-------- 133 (415)
T 1iir_A 67 --LTA--EDVRRFTTEAIATQFDEIPAA-AEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSP-------- 133 (415)
T ss_dssp --CCH--HHHHHHHHHHHHHHHHHHHHH-TTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCS--------
T ss_pred --cch--HHHHHHHHHHHHHHHHHHHHH-hcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCc--------
Confidence 000 01111111 122334444431 27999999998 5568 8899999999999988775332100
Q ss_pred ccccCcCCCcccccCCCCCC-ccccc-cc-cCcc----ccchhHHHHHHh--------hhccCCccEEEEcChhhhcHHH
Q 011142 164 VFESVSSESEYLVVPCLPDK-IEFTT-QQ-VDSS----LGSRFNVFQKKM--------GAADTGTYGVIVNSFEELEPAY 228 (492)
Q Consensus 164 ~~~~~~~~~~~~~~p~~~~~-~~~~~-~~-l~~~----~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~l~~~~ 228 (492)
..+....+. .++.+ ..... .. .... +...+......+ .+..... .+++++++.+++.
T Consensus 134 ---~~p~~~~~~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~- 205 (415)
T 1iir_A 134 ---YYPPPPLGE---PSTQDTIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTD-HPWVAADPVLAPL- 205 (415)
T ss_dssp ---SSCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCS-SCEECSCTTTSCC-
T ss_pred ---ccCCccCCc---cccchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCC-CEEEeeChhhcCC-
Confidence 000000000 01010 00000 00 0000 000111111111 0001122 5688888888731
Q ss_pred HHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC
Q 011142 229 IKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS 308 (492)
Q Consensus 229 ~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~ 308 (492)
.+..+ ++++|||+..++. ...+.++.+|++.. +++|||++||.. ...+.+..+++++++.
T Consensus 206 ---~~~~~--~~~~vG~~~~~~~------------~~~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~~~~~al~~~ 265 (415)
T 1iir_A 206 ---QPTDL--DAVQTGAWILPDE------------RPLSPELAAFLDAG--PPPVYLGFGSLG-APADAVRVAIDAIRAH 265 (415)
T ss_dssp ---CCCSS--CCEECCCCCCCCC------------CCCCHHHHHHHHTS--SCCEEEECC----CCHHHHHHHHHHHHHT
T ss_pred ---CcccC--CeEeeCCCccCcc------------cCCCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHHHHHHHHHHC
Confidence 12222 7899999875422 11467788999764 468999999987 5677788899999999
Q ss_pred CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCc
Q 011142 309 NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 309 ~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~ 388 (492)
+.+++|.++..... ... + ++|+++.+|+||.++|+.+++ ||||||+||++||+++|||+|++|..
T Consensus 266 ~~~~v~~~g~~~~~--~~~--~---------~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~ 330 (415)
T 1iir_A 266 GRRVILSRGWADLV--LPD--D---------GADCFAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGAPQILLPQM 330 (415)
T ss_dssp TCCEEECTTCTTCC--CSS--C---------GGGEEECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCS
T ss_pred CCeEEEEeCCCccc--ccC--C---------CCCEEEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCCCEEECCCC
Confidence 99999998754321 111 2 348999999999999988888 99999999999999999999999999
Q ss_pred cccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCc
Q 011142 389 GDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGS 468 (492)
Q Consensus 389 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 468 (492)
.||..||+++ ++.|+|+.++.. .++.++|.++|+++ +|+ +++++++++++.+++ ..
T Consensus 331 ~dQ~~na~~l-~~~g~g~~~~~~-------------~~~~~~l~~~i~~l-~~~----~~~~~~~~~~~~~~~-----~~ 386 (415)
T 1iir_A 331 ADQPYYAGRV-AELGVGVAHDGP-------------IPTFDSLSAALATA-LTP----ETHARATAVAGTIRT-----DG 386 (415)
T ss_dssp TTHHHHHHHH-HHHTSEEECSSS-------------SCCHHHHHHHHHHH-TSH----HHHHHHHHHHHHSCS-----CH
T ss_pred CccHHHHHHH-HHCCCcccCCcC-------------CCCHHHHHHHHHHH-cCH----HHHHHHHHHHHHHhh-----cC
Confidence 9999999999 599999998765 48999999999999 887 899999998888652 22
Q ss_pred hHHHHHHHHHHHHhc
Q 011142 469 SHLNVTLVIQDIMKH 483 (492)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (492)
+...+.+.|+++.++
T Consensus 387 ~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 387 AAVAARLLLDAVSRE 401 (415)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhc
Confidence 244555666666554
No 11
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=2.8e-40 Score=334.28 Aligned_cols=383 Identities=16% Similarity=0.094 Sum_probs=251.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
|||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+... ++.+..++..... .+.. . ..
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~---------g~~~~~~~~~~~~-~~~~-~--~~- 66 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEV---------GVPHVPVGLPQHM-MLQE-G--MP- 66 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH---------TCCEEECSCCGGG-CCCT-T--SC-
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc---------CCeeeecCCCHHH-HHhh-c--cc-
Confidence 6999999999999999999999999999999999998766555443 6888887643211 1111 0 00
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCC-Ccc--HHHHHHHcCCCeEEEecchHHHHHHHhhhccccc
Q 011142 88 VASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMC-LPY--TAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKV 164 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~-~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 164 (492)
.... ..+..........+.+.+++...+||+||+|.+ .++ +..+|+.+|||++.+++++.+....
T Consensus 67 -~~~~--~~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~--------- 134 (416)
T 1rrv_A 67 -PPPP--EEEQRLAAMTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASP--------- 134 (416)
T ss_dssp -CCCH--HHHHHHHHHHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCS---------
T ss_pred -cchh--HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCc---------
Confidence 0000 011111111112222222211268999999973 456 8889999999999987765322100
Q ss_pred cccCcCCCcccccCCC-CCCccccc--cccCcc----ccchhHHHHHHh--------hhccCCccEEEEcChhhhcHHHH
Q 011142 165 FESVSSESEYLVVPCL-PDKIEFTT--QQVDSS----LGSRFNVFQKKM--------GAADTGTYGVIVNSFEELEPAYI 229 (492)
Q Consensus 165 ~~~~~~~~~~~~~p~~-~~~~~~~~--~~l~~~----~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~l~~~~~ 229 (492)
..+ +..+ . .+ +.+..... ...... +...+..+...+ .+..... .+++++.++++++
T Consensus 135 --~~p-~~~~--~-~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~-- 205 (416)
T 1rrv_A 135 --HLP-PAYD--E-PTTPGVTDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGE-RPLLAADPVLAPL-- 205 (416)
T ss_dssp --SSC-CCBC--S-CCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCS-SCEECSCTTTSCC--
T ss_pred --ccC-CCCC--C-CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCC-CeEEccCccccCC--
Confidence 000 0000 0 01 11000000 000000 001111111111 1111223 6788998888732
Q ss_pred HHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcC-CCHHhHHHHHHHHHhC
Q 011142 230 KEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCN-LIPSQMRELGLGLEAS 308 (492)
Q Consensus 230 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~-~~~~~~~~~~~a~~~~ 308 (492)
+..+ ++++|||+..+... ..+.++.+|++.. +++|||++||... ...+.+..++++++..
T Consensus 206 ---~~~~--~~~~vG~~~~~~~~------------~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~ 266 (416)
T 1rrv_A 206 ---QPDV--DAVQTGAWLLSDER------------PLPPELEAFLAAG--SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ 266 (416)
T ss_dssp ---CSSC--CCEECCCCCCCCCC------------CCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHHHHHHHHHHHHT
T ss_pred ---CCCC--CeeeECCCccCccC------------CCCHHHHHHHhcC--CCeEEEecCCCCccChHHHHHHHHHHHHHC
Confidence 1222 78999998764221 1367788999764 4689999999875 3456678899999999
Q ss_pred CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCc
Q 011142 309 NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 309 ~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~ 388 (492)
+.+|||.++..... ... + ++|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|..
T Consensus 267 ~~~~v~~~g~~~~~--~~~--~---------~~~v~~~~~~~~~~ll~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~ 331 (416)
T 1rrv_A 267 GRRVILSRGWTELV--LPD--D---------RDDCFAIDEVNFQALFRRVAA--VIHHGSAGTEHVATRAGVPQLVIPRN 331 (416)
T ss_dssp TCCEEEECTTTTCC--CSC--C---------CTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCS
T ss_pred CCeEEEEeCCcccc--ccC--C---------CCCEEEeccCChHHHhccCCE--EEecCChhHHHHHHHcCCCEEEccCC
Confidence 99999998765321 111 2 458999999999999988888 99999999999999999999999999
Q ss_pred cccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCc
Q 011142 389 GDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGS 468 (492)
Q Consensus 389 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 468 (492)
.||..||+++ ++.|+|+.++.. .++.++|.++|+++ +|+ +++++++++++++++ .++
T Consensus 332 ~dQ~~na~~l-~~~g~g~~~~~~-------------~~~~~~l~~~i~~l-~~~----~~~~~~~~~~~~~~~----~~~ 388 (416)
T 1rrv_A 332 TDQPYFAGRV-AALGIGVAHDGP-------------TPTFESLSAALTTV-LAP----ETRARAEAVAGMVLT----DGA 388 (416)
T ss_dssp BTHHHHHHHH-HHHTSEEECSSS-------------CCCHHHHHHHHHHH-TSH----HHHHHHHHHTTTCCC----CHH
T ss_pred CCcHHHHHHH-HHCCCccCCCCC-------------CCCHHHHHHHHHHh-hCH----HHHHHHHHHHHHHhh----cCc
Confidence 9999999999 599999998765 48999999999999 887 899999998887662 233
Q ss_pred hHHHHHHHHHHHHhc
Q 011142 469 SHLNVTLVIQDIMKH 483 (492)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (492)
. .+++.+++++.++
T Consensus 389 ~-~~~~~i~e~~~~~ 402 (416)
T 1rrv_A 389 A-AAADLVLAAVGRE 402 (416)
T ss_dssp H-HHHHHHHHHHHC-
T ss_pred H-HHHHHHHHHHhcc
Confidence 3 4433332666543
No 12
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=1.1e-40 Score=335.50 Aligned_cols=356 Identities=15% Similarity=0.113 Sum_probs=243.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
|||+|++.++.||++|+++||++|++|||+|+|++++...+.+.+. ++.+..++.+.... .....
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~---------g~~~~~l~~~~~~~---~~~~~--- 65 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEV---------GVPMVPVGRAVRAG---AREPG--- 65 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHT---------TCCEEECSSCSSGG---GSCTT---
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc---------CCceeecCCCHHHH---hcccc---
Confidence 6899999999999999999999999999999999998876666543 68888876432210 00000
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccH---HHHHHHcCCCeEEEecchHHHHHHHhhhccccc
Q 011142 88 VASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYT---AHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKV 164 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~---~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 164 (492)
.........+........+.+.+++ .+||+||+|.....+ ..+|+.+|||++.+..++......
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~--------- 132 (404)
T 3h4t_A 66 ELPPGAAEVVTEVVAEWFDKVPAAI----EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSE--------- 132 (404)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHHHH----TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGG---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh----cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCCh---------
Confidence 0000111222333334444444444 369999999775533 689999999999887765421100
Q ss_pred cccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhcc-------CCccEEEEcChhhhcHHHHHHHHhhcC
Q 011142 165 FESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAAD-------TGTYGVIVNSFEELEPAYIKEYKKIRH 237 (492)
Q Consensus 165 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~l~~~~~~~~~~~~~ 237 (492)
.+..............++..++.....+.... ...+..+.+..+.+.+ .+.++
T Consensus 133 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p------~~~~~ 192 (404)
T 3h4t_A 133 --------------QSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSP------LRPTD 192 (404)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSC------CCTTC
T ss_pred --------------hHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeC------CCCCC
Confidence 00000000000000000000111111100000 0011234455555542 23466
Q ss_pred CcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEe
Q 011142 238 DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIR 317 (492)
Q Consensus 238 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~ 317 (492)
++++++|++..+... .+++++.+|++. ++++|||++||... ..+.+..+++++++.++++||..+
T Consensus 193 ~~~~~~G~~~~~~~~------------~~~~~l~~~l~~--~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g 257 (404)
T 3h4t_A 193 LGTVQTGAWILPDQR------------PLSAELEGFLRA--GSPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSG 257 (404)
T ss_dssp CSCCBCCCCCCCCCC------------CCCHHHHHHHHT--SSCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECT
T ss_pred CCeEEeCccccCCCC------------CCCHHHHHHHhc--CCCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeC
Confidence 789999987654321 146788889875 45789999999987 677888999999999999999987
Q ss_pred CCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHH
Q 011142 318 EGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKL 397 (492)
Q Consensus 318 ~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~r 397 (492)
...... +. .++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|+..||+.||.+
T Consensus 258 ~~~~~~------~~-------~~~~v~~~~~~~~~~ll~~~d~--~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~ 322 (404)
T 3h4t_A 258 WAGLGR------ID-------EGDDCLVVGEVNHQVLFGRVAA--VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGR 322 (404)
T ss_dssp TTTCCC------SS-------CCTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHH
T ss_pred Cccccc------cc-------CCCCEEEecCCCHHHHHhhCcE--EEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHH
Confidence 643210 10 2569999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Q 011142 398 VVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMAN 460 (492)
Q Consensus 398 v~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~ 460 (492)
+ ++.|+|+.+... .+++++|.++|+++++ + +|+++++++++.+.
T Consensus 323 ~-~~~G~g~~l~~~-------------~~~~~~l~~ai~~ll~-~----~~~~~~~~~~~~~~ 366 (404)
T 3h4t_A 323 V-ADLGVGVAHDGP-------------TPTVESLSAALATALT-P----GIRARAAAVAGTIR 366 (404)
T ss_dssp H-HHHTSEEECSSS-------------SCCHHHHHHHHHHHTS-H----HHHHHHHHHHTTCC
T ss_pred H-HHCCCEeccCcC-------------CCCHHHHHHHHHHHhC-H----HHHHHHHHHHHHHh
Confidence 9 599999999876 4899999999999998 6 89999999998865
No 13
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=6.4e-39 Score=325.77 Aligned_cols=373 Identities=20% Similarity=0.277 Sum_probs=246.2
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 80 (492)
|.++|.||||+|++.++.||++|+++||++|+++||+|++++++...+.+.+ .++.++.++.. .+.
T Consensus 1 M~~~m~m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~---------~g~~~~~~~~~-----~~~ 66 (430)
T 2iyf_A 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAA---------TGPRPVLYHST-----LPG 66 (430)
T ss_dssp -------CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHT---------TSCEEEECCCC-----SCC
T ss_pred CCCccccceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHh---------CCCEEEEcCCc-----Ccc
Confidence 7787888999999999999999999999999999999999999876554432 26777766532 111
Q ss_pred CCCcccccc-c-cchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhh
Q 011142 81 GCENLDMVA-S-LGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNN 158 (492)
Q Consensus 81 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 158 (492)
......... . ...+..+..........+.+++++ .+||+||+|...+++..+|+.+|||++.+++...... .+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~-~~~~ 143 (430)
T 2iyf_A 67 PDADPEAWGSTLLDNVEPFLNDAIQALPQLADAYAD--DIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWK-GYEE 143 (430)
T ss_dssp TTSCGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHTT--SCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCT-THHH
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhc--cCCCEEEECCccHHHHHHHHHcCCCEEEEeccccccc-cccc
Confidence 111100000 0 111222223334556778888888 8999999998777888999999999999876542000 0000
Q ss_pred hccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHh------hhccCCccEEEEcChhhhcHHHHHHH
Q 011142 159 LFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKM------GAADTGTYGVIVNSFEELEPAYIKEY 232 (492)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~l~~~~~~~~ 232 (492)
.+. .+... ....++. .. .+...+..+..+. .+.....+.+++++.+.+++.
T Consensus 144 ~~~--------~~~~~-~~~~~~~--------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~----- 200 (430)
T 2iyf_A 144 EVA--------EPMWR-EPRQTER--------GR-AYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPH----- 200 (430)
T ss_dssp HTH--------HHHHH-HHHHSHH--------HH-HHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTT-----
T ss_pred ccc--------cchhh-hhccchH--------HH-HHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCC-----
Confidence 000 00000 0000000 00 0000011111110 001113567888888877732
Q ss_pred HhhcCCc-EEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-CC
Q 011142 233 KKIRHDK-VWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS-NR 310 (492)
Q Consensus 233 ~~~~~~~-~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-~~ 310 (492)
...++++ +++|||.+... .+..+|....+++++||+++||......+.+..++++++.. +.
T Consensus 201 ~~~~~~~~v~~vG~~~~~~-----------------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~ 263 (430)
T 2iyf_A 201 ADRVDEDVYTFVGACQGDR-----------------AEEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGW 263 (430)
T ss_dssp GGGSCTTTEEECCCCC----------------------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTE
T ss_pred cccCCCccEEEeCCcCCCC-----------------CCCCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCe
Confidence 2456678 99999864321 11224555445678999999999855567788899999885 78
Q ss_pred CeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccc
Q 011142 311 PFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGD 390 (492)
Q Consensus 311 ~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~D 390 (492)
+++|.++.....+.+.. + +.|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...|
T Consensus 264 ~~~~~~G~~~~~~~l~~--~---------~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~ 330 (430)
T 2iyf_A 264 HLVLQIGRKVTPAELGE--L---------PDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVD 330 (430)
T ss_dssp EEEEECC---CGGGGCS--C---------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHH
T ss_pred EEEEEeCCCCChHHhcc--C---------CCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccc
Confidence 89898876543222211 2 468999999999999999999 9999999999999999999999999999
Q ss_pred cchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Q 011142 391 QFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANM 461 (492)
Q Consensus 391 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~ 461 (492)
|..|+.++ ++.|+|+.+... .++.++|.++|.++++|+ ++++++.++++.+.+
T Consensus 331 q~~~a~~~-~~~g~g~~~~~~-------------~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~~~ 383 (430)
T 2iyf_A 331 QFGNADML-QGLGVARKLATE-------------EATADLLRETALALVDDP----EVARRLRRIQAEMAQ 383 (430)
T ss_dssp HHHHHHHH-HHTTSEEECCCC--------------CCHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHcCCEEEcCCC-------------CCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHHh
Confidence 99999999 599999988765 489999999999999987 788888888777664
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=5.9e-39 Score=326.98 Aligned_cols=386 Identities=13% Similarity=0.113 Sum_probs=240.2
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCC--
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEG-- 81 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-- 81 (492)
...||||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+.. .++.++.++......++...
T Consensus 17 ~~~~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~---------~G~~~~~i~~~~~~~~~~~~~~ 87 (441)
T 2yjn_A 17 RGSHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITA---------AGLTAVPVGTDVDLVDFMTHAG 87 (441)
T ss_dssp --CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHT---------TTCCEEECSCCCCHHHHHHHTT
T ss_pred cCCccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHh---------CCCceeecCCccchHHHhhhhh
Confidence 4568999999999999999999999999999999999999876555443 26888887643100000000
Q ss_pred ---------CCcc---ccccccchHHH----HHHHHh-----h-hhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcC
Q 011142 82 ---------CENL---DMVASLGLAFD----FFTAAD-----M-LQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFN 139 (492)
Q Consensus 82 ---------~~~~---~~~~~~~~~~~----~~~~~~-----~-~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lg 139 (492)
.... ........+.. +...+. . ....+.+++++ .+||+||+|..+.++..+|+.+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pDlVv~d~~~~~~~~aA~~lg 165 (441)
T 2yjn_A 88 HDIIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRK--WRPDLVIWEPLTFAAPIAAAVTG 165 (441)
T ss_dssp HHHHHHHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHH--HCCSEEEECTTCTHHHHHHHHHT
T ss_pred cccccccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHh--cCCCEEEecCcchhHHHHHHHcC
Confidence 0000 00000011111 111111 1 45566777787 79999999998788899999999
Q ss_pred CCeEEEecchHHHHHHHhhhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhh-c----cCCcc
Q 011142 140 IPRITFHGTCCFCLVCYNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGA-A----DTGTY 214 (492)
Q Consensus 140 iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~~ 214 (492)
||++.+...+............ ...+.|... .. ..+...+......+.. . ....+
T Consensus 166 iP~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~~~~~~~~~ 225 (441)
T 2yjn_A 166 TPHARLLWGPDITTRARQNFLG-----------LLPDQPEEH----RE-----DPLAEWLTWTLEKYGGPAFDEEVVVGQ 225 (441)
T ss_dssp CCEEEECSSCCHHHHHHHHHHH-----------HGGGSCTTT----CC-----CHHHHHHHHHHHHTTCCCCCGGGTSCS
T ss_pred CCEEEEecCCCcchhhhhhhhh-----------hcccccccc----cc-----chHHHHHHHHHHHcCCCCCCccccCCC
Confidence 9999986543221110000000 000011000 00 0000111111111111 0 00123
Q ss_pred EEEEcChhhhcHHHHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCC-
Q 011142 215 GVIVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNL- 293 (492)
Q Consensus 215 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~- 293 (492)
..+..+.+.+++ ...++. ..+++.... .+.++.+|++..+++++|||++||....
T Consensus 226 ~~l~~~~~~~~~------~~~~~~--~~~~~~~~~----------------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~ 281 (441)
T 2yjn_A 226 WTIDPAPAAIRL------DTGLKT--VGMRYVDYN----------------GPSVVPEWLHDEPERRRVCLTLGISSREN 281 (441)
T ss_dssp SEEECSCGGGSC------CCCCCE--EECCCCCCC----------------SSCCCCGGGSSCCSSCEEEEEC-------
T ss_pred eEEEecCccccC------CCCCCC--CceeeeCCC----------------CCcccchHhhcCCCCCEEEEECCCCcccc
Confidence 344444333331 111210 112221100 1345678988666778999999998864
Q ss_pred --CHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchh
Q 011142 294 --IPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNS 371 (492)
Q Consensus 294 --~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s 371 (492)
..+.+..+++++++.++++||..++... ..+.. .+.|+++.+|+||.++|+.+++ ||||||+||
T Consensus 282 ~~~~~~~~~~~~al~~~~~~~v~~~g~~~~-~~l~~-----------~~~~v~~~~~~~~~~ll~~ad~--~V~~~G~~t 347 (441)
T 2yjn_A 282 SIGQVSIEELLGAVGDVDAEIIATFDAQQL-EGVAN-----------IPDNVRTVGFVPMHALLPTCAA--TVHHGGPGS 347 (441)
T ss_dssp ---CCSTTTTHHHHHTSSSEEEECCCTTTT-SSCSS-----------CCSSEEECCSCCHHHHGGGCSE--EEECCCHHH
T ss_pred cChHHHHHHHHHHHHcCCCEEEEEECCcch-hhhcc-----------CCCCEEEecCCCHHHHHhhCCE--EEECCCHHH
Confidence 3456777889999889999999875431 11111 1469999999999999999998 999999999
Q ss_pred hHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHH
Q 011142 372 TIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNR 451 (492)
Q Consensus 372 ~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~ 451 (492)
++|++++|||+|++|...||..||.++ ++.|+|+.++.. .++.++|.++|.++++|+ +++++
T Consensus 348 ~~Ea~~~G~P~i~~p~~~dQ~~na~~l-~~~g~g~~~~~~-------------~~~~~~l~~~i~~ll~~~----~~~~~ 409 (441)
T 2yjn_A 348 WHTAAIHGVPQVILPDGWDTGVRAQRT-QEFGAGIALPVP-------------ELTPDQLRESVKRVLDDP----AHRAG 409 (441)
T ss_dssp HHHHHHTTCCEEECCCSHHHHHHHHHH-HHHTSEEECCTT-------------TCCHHHHHHHHHHHHHCH----HHHHH
T ss_pred HHHHHHhCCCEEEeCCcccHHHHHHHH-HHcCCEEEcccc-------------cCCHHHHHHHHHHHhcCH----HHHHH
Confidence 999999999999999999999999999 599999998775 489999999999999987 89999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011142 452 AVKLGQMANMAVQEGGSSHLNVTLVIQDIM 481 (492)
Q Consensus 452 a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (492)
+.++++.+.+ .+| . ..+.+.|+++.
T Consensus 410 ~~~~~~~~~~---~~~-~-~~~~~~i~~~~ 434 (441)
T 2yjn_A 410 AARMRDDMLA---EPS-P-AEVVGICEELA 434 (441)
T ss_dssp HHHHHHHHHT---SCC-H-HHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCC-H-HHHHHHHHHHH
Confidence 9999888763 233 3 34444444443
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=9.5e-38 Score=312.33 Aligned_cols=364 Identities=14% Similarity=0.124 Sum_probs=246.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCcccc-------CCCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEA-------GLPE 80 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~-------~l~~ 80 (492)
|||++++.++.||++|+++||++|+++||+|++++++...+.+.. .++.++.++...... +.+.
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTG---------VGLPAVATTDLPIRHFITTDREGRPE 71 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH---------TTCCEEESCSSCHHHHHHBCTTSCBC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHh---------CCCEEEEeCCcchHHHHhhhcccCcc
Confidence 699999999999999999999999999999999999875544433 257777765321000 0110
Q ss_pred CCCccccccccchH-HH-HHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHHHhh
Q 011142 81 GCENLDMVASLGLA-FD-FFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNN 158 (492)
Q Consensus 81 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 158 (492)
.... .......+ .. +..........+.+++++ .+||+||+|.+..++..+|+.+|||++.+...+..
T Consensus 72 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~------- 140 (384)
T 2p6p_A 72 AIPS--DPVAQARFTGRWFARMAASSLPRMLDFSRA--WRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD------- 140 (384)
T ss_dssp CCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC-------
T ss_pred ccCc--chHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcc-------
Confidence 0000 00000011 11 112223445677778888 79999999988778888999999999986532100
Q ss_pred hccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhh-hccCCccEEEEcChhhhcHHHHHHHHhhcC
Q 011142 159 LFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMG-AADTGTYGVIVNSFEELEPAYIKEYKKIRH 237 (492)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 237 (492)
. ..+. ..+...+..+..... .....++.+++++.+.++++ ..++
T Consensus 141 ---------------~---~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~------~~~~ 185 (384)
T 2p6p_A 141 ---------------A---DGIH-----------PGADAELRPELSELGLERLPAPDLFIDICPPSLRPA------NAAP 185 (384)
T ss_dssp ---------------C---TTTH-----------HHHHHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCT------TSCC
T ss_pred ---------------c---chhh-----------HHHHHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCC------CCCC
Confidence 0 0000 000011112222210 11112567788887777621 1222
Q ss_pred -CcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCC-----CHHhHHHHHHHHHhCCCC
Q 011142 238 -DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNL-----IPSQMRELGLGLEASNRP 311 (492)
Q Consensus 238 -~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~-----~~~~~~~~~~a~~~~~~~ 311 (492)
.++.+++ . . .+.++.+|++..+++++||+++||.... ..+.+..+++++++.+++
T Consensus 186 ~~~~~~~~-~--~----------------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~~ 246 (384)
T 2p6p_A 186 ARMMRHVA-T--S----------------RQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVE 246 (384)
T ss_dssp CEECCCCC-C--C----------------CCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTCE
T ss_pred CCceEecC-C--C----------------CCCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCCcE
Confidence 2333332 1 0 1234567877645667999999999864 457788999999999999
Q ss_pred eEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCcccc
Q 011142 312 FIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQ 391 (492)
Q Consensus 312 vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ 391 (492)
++|+.++. .. +.+. ..+.|+.+ +|+||.++|+++++ ||||||+||++||+++|+|+|++|...||
T Consensus 247 ~~~~~g~~-~~---------~~l~--~~~~~v~~-~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~dq 311 (384)
T 2p6p_A 247 LIVAAPDT-VA---------EALR--AEVPQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVL 311 (384)
T ss_dssp EEEECCHH-HH---------HHHH--HHCTTSEE-ECCCHHHHGGGCSE--EEECSCTTHHHHHHHTTCCEEECCCSHHH
T ss_pred EEEEeCCC-CH---------HhhC--CCCCceEE-cCCCHHHHHhhCCE--EEeCCcHHHHHHHHHhCCCEEEccCcccc
Confidence 99997642 11 1111 12569999 99999999999998 99999999999999999999999999999
Q ss_pred chhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHH
Q 011142 392 FMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHL 471 (492)
Q Consensus 392 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 471 (492)
..||.++ ++.|+|+.++.. .++.++|.++|.++++|+ ++++++.++++.+++. +| ..
T Consensus 312 ~~~a~~~-~~~g~g~~~~~~-------------~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~~~~---~~--~~ 368 (384)
T 2p6p_A 312 EAPARRV-ADYGAAIALLPG-------------EDSTEAIADSCQELQAKD----TYARRAQDLSREISGM---PL--PA 368 (384)
T ss_dssp HHHHHHH-HHHTSEEECCTT-------------CCCHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHTS---CC--HH
T ss_pred hHHHHHH-HHCCCeEecCcC-------------CCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHHhC---CC--HH
Confidence 9999999 599999998765 489999999999999987 8999999999988733 43 33
Q ss_pred HHHHHHHHHHhc
Q 011142 472 NVTLVIQDIMKH 483 (492)
Q Consensus 472 ~~~~~~~~~~~~ 483 (492)
.+.+.|+.+--|
T Consensus 369 ~~~~~i~~~~~~ 380 (384)
T 2p6p_A 369 TVVTALEQLAHH 380 (384)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 444445554433
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=6e-36 Score=300.75 Aligned_cols=355 Identities=13% Similarity=0.149 Sum_probs=222.0
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCcccc-------
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEA------- 76 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~------- 76 (492)
...+|||+|++.++.||++|+++||++|+++||+|++++++...+.+... ++.+..++.+....
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~---------G~~~~~~~~~~~~~~~~~~~~ 82 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGA---------GLPFAPTCPSLDMPEVLSWDR 82 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHT---------TCCEEEEESSCCHHHHHSBCT
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhC---------CCeeEecCCccchHhhhhhhc
Confidence 34579999999999999999999999999999999999987766555442 67777775321100
Q ss_pred -CCCCCCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHHHH
Q 011142 77 -GLPEGCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVC 155 (492)
Q Consensus 77 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 155 (492)
+.+.................+..........+.+++++ ++||+||+|...+++..+|+.+|||++.+..........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~ 160 (398)
T 4fzr_A 83 EGNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAER--WKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELI 160 (398)
T ss_dssp TSCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHH
T ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhh
Confidence 00000000000000011112222334556678888888 899999999877888999999999999865442110000
Q ss_pred HhhhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhh-hccCCccEEEEcChhhhcHHHHHHHHh
Q 011142 156 YNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMG-AADTGTYGVIVNSFEELEPAYIKEYKK 234 (492)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~ 234 (492)
. +. ....+.....+.. ......+..+......+.. ...
T Consensus 161 ~---------------------~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 199 (398)
T 4fzr_A 161 K---------------------SA---------------GVGELAPELAELGLTDFPDPLLSIDVCPPSMEA-----QPK 199 (398)
T ss_dssp H---------------------HH---------------HHHHTHHHHHTTTCSSCCCCSEEEECSCGGGC---------
T ss_pred h---------------------HH---------------HHHHHHHHHHHcCCCCCCCCCeEEEeCChhhCC-----CCC
Confidence 0 00 0000011111100 0111223344444333331 100
Q ss_pred hcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCC--------CHHhHHHHHHHHH
Q 011142 235 IRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNL--------IPSQMRELGLGLE 306 (492)
Q Consensus 235 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~--------~~~~~~~~~~a~~ 306 (492)
.....+.++++.. .+.++.+|+...+++++||+++||.... ..+.+..+++++.
T Consensus 200 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~ 261 (398)
T 4fzr_A 200 PGTTKMRYVPYNG------------------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELP 261 (398)
T ss_dssp CCCEECCCCCCCC------------------SSCCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGG
T ss_pred CCCCCeeeeCCCC------------------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHH
Confidence 0001111221100 1234556766555678999999999753 3456888999999
Q ss_pred hCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccC
Q 011142 307 ASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWP 386 (492)
Q Consensus 307 ~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P 386 (492)
+.+.++||..++.. .+.+.. .++|+++.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|
T Consensus 262 ~~~~~~v~~~~~~~-~~~l~~-----------~~~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~v~~p 327 (398)
T 4fzr_A 262 KLGFEVVVAVSDKL-AQTLQP-----------LPEGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQVSVP 327 (398)
T ss_dssp GGTCEEEECCCC--------------------CCTTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCEEECC
T ss_pred hCCCEEEEEeCCcc-hhhhcc-----------CCCcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCEEecC
Confidence 88999999887653 111111 2569999999999999999999 999999999999999999999999
Q ss_pred CccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Q 011142 387 LFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMAN 460 (492)
Q Consensus 387 ~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~ 460 (492)
...||..|+.++ ++.|+|+.++.. .+++++|.++|.++|+|+ ++++++.++++.+.
T Consensus 328 ~~~~q~~~a~~~-~~~g~g~~~~~~-------------~~~~~~l~~ai~~ll~~~----~~~~~~~~~~~~~~ 383 (398)
T 4fzr_A 328 VIAEVWDSARLL-HAAGAGVEVPWE-------------QAGVESVLAACARIRDDS----SYVGNARRLAAEMA 383 (398)
T ss_dssp CSGGGHHHHHHH-HHTTSEEECC--------------------CHHHHHHHHHHCT----HHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHH-HHcCCEEecCcc-------------cCCHHHHHHHHHHHHhCH----HHHHHHHHHHHHHH
Confidence 999999999999 599999999876 489999999999999999 88888888887765
No 17
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=4.8e-35 Score=294.14 Aligned_cols=363 Identities=14% Similarity=0.144 Sum_probs=239.0
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC----
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE---- 80 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~---- 80 (492)
.++|||+|++.++.||++|+++||++|+++||+|+++++ ...+.+.. .++.+..++.+........
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~---------~G~~~~~~~~~~~~~~~~~~~~~ 87 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAA---------AGLEVVDVAPDYSAVKVFEQVAK 87 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHT---------TTCEEEESSTTCCHHHHHHHHHH
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHh---------CCCeeEecCCccCHHHHhhhccc
Confidence 457899999999999999999999999999999999999 65555543 2688887753210000000
Q ss_pred CCCc-------cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHH
Q 011142 81 GCEN-------LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCL 153 (492)
Q Consensus 81 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 153 (492)
.... ............+..........+.+++++ ++||+||+|...+++..+|+.+|||++.........
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~- 164 (398)
T 3oti_A 88 DNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDD--YRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRT- 164 (398)
T ss_dssp HCHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHH--HCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCC-
T ss_pred CCccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCc-
Confidence 0000 000001122233344445667888999999 899999999888888999999999999764331000
Q ss_pred HHHhhhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHH
Q 011142 154 VCYNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYK 233 (492)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 233 (492)
. .+ .......+......+.......+..+....+.+..+. ..
T Consensus 165 --------------------~----~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 206 (398)
T 3oti_A 165 --------------------R----GM-----------HRSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEA---EP 206 (398)
T ss_dssp --------------------T----TH-----------HHHHHTTCHHHHHHTTCCCCCCSEEECSSCGGGGTTS---CC
T ss_pred --------------------c----ch-----------hhHHHHHHHHHHHHcCCCCCCCCeEEEeCCHHHCCCC---CC
Confidence 0 00 0000000111111111111122333333322222000 00
Q ss_pred hhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCC--CHHhHHHHHHHHHhCCCC
Q 011142 234 KIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNL--IPSQMRELGLGLEASNRP 311 (492)
Q Consensus 234 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~--~~~~~~~~~~a~~~~~~~ 311 (492)
..++ +.++ |. ..+..+.+|+...+++++||+++||.... ..+.+..+++++++.+.+
T Consensus 207 ~~~~--~~~~-~~------------------~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (398)
T 3oti_A 207 EGWF--MRWV-PY------------------GGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDAD 265 (398)
T ss_dssp CSBC--CCCC-CC------------------CCCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSE
T ss_pred CCCC--cccc-CC------------------CCCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCE
Confidence 0010 1111 00 02344556776656778999999999653 567788899999988999
Q ss_pred eEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCcccc
Q 011142 312 FIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQ 391 (492)
Q Consensus 312 vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ 391 (492)
++|+.++.. .+.+.. + ++|+++.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||
T Consensus 266 ~v~~~g~~~-~~~l~~--~---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p~~~dq 331 (398)
T 3oti_A 266 FVLALGDLD-ISPLGT--L---------PRNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPDPRDQ 331 (398)
T ss_dssp EEEECTTSC-CGGGCS--C---------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCCTTCC
T ss_pred EEEEECCcC-hhhhcc--C---------CCcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEcCCCchh
Confidence 999987653 222211 2 569999999999999999999 99999999999999999999999999999
Q ss_pred chhH--HHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCch
Q 011142 392 FMNE--KLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSS 469 (492)
Q Consensus 392 ~~na--~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 469 (492)
..|| .++ ++.|+|+.++.. ..+++.|. ++++|+ +++++++++++.+.+. .+
T Consensus 332 ~~~a~~~~~-~~~g~g~~~~~~-------------~~~~~~l~----~ll~~~----~~~~~~~~~~~~~~~~---~~-- 384 (398)
T 3oti_A 332 FQHTAREAV-SRRGIGLVSTSD-------------KVDADLLR----RLIGDE----SLRTAAREVREEMVAL---PT-- 384 (398)
T ss_dssp SSCTTHHHH-HHHTSEEECCGG-------------GCCHHHHH----HHHHCH----HHHHHHHHHHHHHHTS---CC--
T ss_pred HHHHHHHHH-HHCCCEEeeCCC-------------CCCHHHHH----HHHcCH----HHHHHHHHHHHHHHhC---CC--
Confidence 9999 999 599999999876 47888776 888888 8999998888887622 33
Q ss_pred HHHHHHHHHHH
Q 011142 470 HLNVTLVIQDI 480 (492)
Q Consensus 470 ~~~~~~~~~~~ 480 (492)
...+.+.++++
T Consensus 385 ~~~~~~~l~~l 395 (398)
T 3oti_A 385 PAETVRRIVER 395 (398)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444555544
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=3.2e-34 Score=287.44 Aligned_cols=351 Identities=12% Similarity=0.142 Sum_probs=229.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEe-cCCcccc-----CCCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQF-QLPCEEA-----GLPE 80 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~-~~~~~~~-----~l~~ 80 (492)
+|||+|++.++.||++|++.|+++|+++||+|++++++...+.+.. .++.+..+ ..+.... ..+.
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~ 71 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHG---------AGLTTAGIRGNDRTGDTGGTTQLRF 71 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHH---------BTCEEEEC--------------CCS
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHh---------CCCceeeecCCccchhhhhhhcccc
Confidence 3799999999999999999999999999999999998765444433 25777766 3211000 0000
Q ss_pred CCCccccccccchHHHHHHHHhhh-------hHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHHH
Q 011142 81 GCENLDMVASLGLAFDFFTAADML-------QEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCL 153 (492)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 153 (492)
................+......+ ...+.+++++ ++||+||+|...+++..+|+.+|||++.+........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~ 149 (391)
T 3tsa_A 72 PNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEA--WRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTA 149 (391)
T ss_dssp CCGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCTT
T ss_pred cccccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHh--cCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCcccc
Confidence 000000000011111122222233 6778889998 8999999998777788899999999998653321000
Q ss_pred HHHhhhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhh-ccCCccEEEEcChhhhcHHHHHHH
Q 011142 154 VCYNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGA-ADTGTYGVIVNSFEELEPAYIKEY 232 (492)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~ 232 (492)
. .........+......+.. .....+.++..+.++++. +
T Consensus 150 ----------------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 189 (391)
T 3tsa_A 150 ----------------------------G-------PFSDRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQA-----S 189 (391)
T ss_dssp ----------------------------T-------HHHHHHHHHHHHHHHHTTSSSSCCCSEEEECSCGGGSC-----T
T ss_pred ----------------------------c-------cccchHHHHHHHHHHHcCCCCCCCCceEEEecChhhcC-----C
Confidence 0 0000000011111111111 111124444444333331 1
Q ss_pred HhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcC---CCHHhHHHHHHHHHhC-
Q 011142 233 KKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCN---LIPSQMRELGLGLEAS- 308 (492)
Q Consensus 233 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~---~~~~~~~~~~~a~~~~- 308 (492)
.......+.++ |.. .+..+..|+...+++++||+++||... ...+.+..++++ ++.
T Consensus 190 ~~~~~~~~~~~-p~~------------------~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p 249 (391)
T 3tsa_A 190 DAPQGAPVQYV-PYN------------------GSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-TELP 249 (391)
T ss_dssp TSCCCEECCCC-CCC------------------CCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTST
T ss_pred CCCccCCeeee-cCC------------------CCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCC
Confidence 10011111222 110 133455677665677899999999854 236678888888 877
Q ss_pred CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCc
Q 011142 309 NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 309 ~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~ 388 (492)
+.+++|..++.. .+.+.. .+.|+++.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|..
T Consensus 250 ~~~~v~~~~~~~-~~~l~~-----------~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~ 315 (391)
T 3tsa_A 250 GVEAVIAVPPEH-RALLTD-----------LPDNARIAESVPLNLFLRTCEL--VICAGGSGTAFTATRLGIPQLVLPQY 315 (391)
T ss_dssp TEEEEEECCGGG-GGGCTT-----------CCTTEEECCSCCGGGTGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCS
T ss_pred CeEEEEEECCcc-hhhccc-----------CCCCEEEeccCCHHHHHhhCCE--EEeCCCHHHHHHHHHhCCCEEecCCc
Confidence 788999876542 222111 2569999999999999999999 99999999999999999999999999
Q ss_pred cccchhHHHHHHHhccceeecc--cCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Q 011142 389 GDQFMNEKLVVQILKIGVKVGV--ESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMAN 460 (492)
Q Consensus 389 ~DQ~~na~rv~e~~G~G~~l~~--~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~ 460 (492)
.||..|+.++ ++.|+|+.+.. . ..+++.|.++|.++|+|+ ++++++.++++.+.
T Consensus 316 ~~q~~~a~~~-~~~g~g~~~~~~~~-------------~~~~~~l~~ai~~ll~~~----~~~~~~~~~~~~~~ 371 (391)
T 3tsa_A 316 FDQFDYARNL-AAAGAGICLPDEQA-------------QSDHEQFTDSIATVLGDT----GFAAAAIKLSDEIT 371 (391)
T ss_dssp TTHHHHHHHH-HHTTSEEECCSHHH-------------HTCHHHHHHHHHHHHTCT----HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH-HHcCCEEecCcccc-------------cCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHH
Confidence 9999999999 59999999987 5 389999999999999999 88888888887765
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=8.1e-32 Score=271.75 Aligned_cols=354 Identities=18% Similarity=0.212 Sum_probs=234.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCcc----------
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCE---------- 74 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~---------- 74 (492)
..+|||+|++.++.||++|+++||++|+++||+|++++++...+.+.. .++.+..++....
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRK---------LGFEPVATGMPVFDGFLAALRIR 88 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHH---------TTCEEEECCCCHHHHHHHHHHHH
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHh---------cCCceeecCcccccchhhhhhhh
Confidence 457999999999999999999999999999999999999765444333 2677877653000
Q ss_pred --ccCCCCCCCccccccccchHHHHHHH-HhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHH
Q 011142 75 --EAGLPEGCENLDMVASLGLAFDFFTA-ADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCF 151 (492)
Q Consensus 75 --~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 151 (492)
....+. .... .........+... .......+.+++++ .+||+||+|....++..+|+.+|||+|........
T Consensus 89 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~ 163 (412)
T 3otg_A 89 FDTDSPEG-LTPE--QLSELPQIVFGRVIPQRVFDELQPVIER--LRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDT 163 (412)
T ss_dssp HSCSCCTT-CCHH--HHTTSHHHHHHTHHHHHHHHHHHHHHHH--HCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCC
T ss_pred hcccCCcc-CChh--HhhHHHHHHHhccchHHHHHHHHHHHHh--cCCCEEEECchhhHHHHHHHHcCCCEEEecccccC
Confidence 000000 0000 0000111122222 23445778888888 89999999987777888999999999985433210
Q ss_pred HHHHHhhhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhh------ccCCccEEEEcChhhhc
Q 011142 152 CLVCYNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGA------ADTGTYGVIVNSFEELE 225 (492)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~l~ 225 (492)
. ++... .+...+.....+... ....++.++..+...++
T Consensus 164 ~-------------------------~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~ 207 (412)
T 3otg_A 164 P-------------------------DDLTR-----------SIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQ 207 (412)
T ss_dssp C-------------------------SHHHH-----------HHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGS
T ss_pred c-------------------------hhhhH-----------HHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhc
Confidence 0 00000 000001111111000 01223445555544443
Q ss_pred HHHHHHHHhhcCCcEEEeccCCCCCcccchhhhcCCCCCcchhhhccc-ccCCCCCeEEEEeeCCCcCCCHHhHHHHHHH
Q 011142 226 PAYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKW-LDSKAPKSVVYACLGSLCNLIPSQMRELGLG 304 (492)
Q Consensus 226 ~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a 304 (492)
. +...+......+.+.... ......+| ....+++++||+++|+......+.+..++++
T Consensus 208 ~-----~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~ 266 (412)
T 3otg_A 208 E-----PEFRARPRRHELRPVPFA----------------EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDG 266 (412)
T ss_dssp C-----HHHHTCTTEEECCCCCCC----------------CCCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHHHHHH
T ss_pred C-----CcccCCCCcceeeccCCC----------------CCCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHHHHHH
Confidence 1 111121111111111100 12234455 2223467799999999976567788889999
Q ss_pred HHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccccccccCchhhHHHHhcCCCeec
Q 011142 305 LEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLT 384 (492)
Q Consensus 305 ~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~ 384 (492)
+.+.+.+++|..++....+.+.. + +.|+.+.+|+|+.++|+++++ ||+|||.||++||+++|+|+|+
T Consensus 267 l~~~~~~~~~~~g~~~~~~~l~~--~---------~~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a~G~P~v~ 333 (412)
T 3otg_A 267 LAGLDADVLVASGPSLDVSGLGE--V---------PANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLS 333 (412)
T ss_dssp HHTSSSEEEEECCSSCCCTTCCC--C---------CTTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHHHTCCEEE
T ss_pred HHcCCCEEEEEECCCCChhhhcc--C---------CCcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHHhCCCEEe
Confidence 99889999999877653332222 2 469999999999999999999 9999999999999999999999
Q ss_pred cCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Q 011142 385 WPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMAN 460 (492)
Q Consensus 385 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~ 460 (492)
+|...||..|+.++ ++.|+|..+... .+++++|.++|.++++|+ ++++++.+.++.+.
T Consensus 334 ~p~~~~q~~~~~~v-~~~g~g~~~~~~-------------~~~~~~l~~ai~~ll~~~----~~~~~~~~~~~~~~ 391 (412)
T 3otg_A 334 FPWAGDSFANAQAV-AQAGAGDHLLPD-------------NISPDSVSGAAKRLLAEE----SYRAGARAVAAEIA 391 (412)
T ss_dssp CCCSTTHHHHHHHH-HHHTSEEECCGG-------------GCCHHHHHHHHHHHHHCH----HHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHH-HHcCCEEecCcc-------------cCCHHHHHHHHHHHHhCH----HHHHHHHHHHHHHh
Confidence 99999999999999 599999999876 489999999999999988 77777777766655
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.97 E-value=4.7e-29 Score=246.86 Aligned_cols=325 Identities=14% Similarity=0.112 Sum_probs=199.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
.||+|...++.||++|.++||++|+++||+|+|++++...+ .+.++. .++.++.++.. +++.. ..
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e--~~~v~~-----~g~~~~~i~~~----~~~~~----~~ 67 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIE--NDLVPK-----AGLPLHLIQVS----GLRGK----GL 67 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTH--HHHTGG-----GTCCEEECC-----------------
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHh--hchhhh-----cCCcEEEEECC----CcCCC----CH
Confidence 48999888888999999999999999999999999865322 111111 25667666522 11110 00
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhhhcccccc
Q 011142 88 VASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVF 165 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (492)
.........+.. ......+++++ .+||+||++..+. .+..+|+.+|||+++.-
T Consensus 68 ~~~~~~~~~~~~----~~~~~~~~l~~--~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe------------------- 122 (365)
T 3s2u_A 68 KSLVKAPLELLK----SLFQALRVIRQ--LRPVCVLGLGGYVTGPGGLAARLNGVPLVIHE------------------- 122 (365)
T ss_dssp -----CHHHHHH----HHHHHHHHHHH--HCCSEEEECSSSTHHHHHHHHHHTTCCEEEEE-------------------
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHh--cCCCEEEEcCCcchHHHHHHHHHcCCCEEEEe-------------------
Confidence 001111111211 12344567888 8999999997665 45678999999999631
Q ss_pred ccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEecc
Q 011142 166 ESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGP 245 (492)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp 245 (492)
...+|++.. +++ .+.++.++. ++++-. ....+.+++|+
T Consensus 123 --------~n~~~G~~n------------------r~l------~~~a~~v~~-~~~~~~---------~~~~k~~~~g~ 160 (365)
T 3s2u_A 123 --------QNAVAGTAN------------------RSL------APIARRVCE-AFPDTF---------PASDKRLTTGN 160 (365)
T ss_dssp --------CSSSCCHHH------------------HHH------GGGCSEEEE-SSTTSS---------CC---CEECCC
T ss_pred --------cchhhhhHH------------------Hhh------ccccceeee-cccccc---------cCcCcEEEECC
Confidence 111122211 111 111223332 222111 01245677785
Q ss_pred CCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC----CCCeEEEEeCCCc
Q 011142 246 VSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS----NRPFIWVIREGET 321 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~----~~~vv~~~~~~~~ 321 (492)
........ ... ......+++++|++..||.... .....+.+++..+ +..++|.++...
T Consensus 161 pvr~~~~~-------------~~~--~~~~~~~~~~~ilv~gGs~g~~--~~~~~~~~al~~l~~~~~~~vi~~~G~~~- 222 (365)
T 3s2u_A 161 PVRGELFL-------------DAH--ARAPLTGRRVNLLVLGGSLGAE--PLNKLLPEALAQVPLEIRPAIRHQAGRQH- 222 (365)
T ss_dssp CCCGGGCC-------------CTT--SSCCCTTSCCEEEECCTTTTCS--HHHHHHHHHHHTSCTTTCCEEEEECCTTT-
T ss_pred CCchhhcc-------------chh--hhcccCCCCcEEEEECCcCCcc--ccchhhHHHHHhcccccceEEEEecCccc-
Confidence 43221110 011 1111123567899999987652 2333456666654 345667665442
Q ss_pred chhhhhccchhhHHHHhcCCCeeeecCCch-hhcccCCCccccccccCchhhHHHHhcCCCeeccCCc----cccchhHH
Q 011142 322 SKELKKWVVEDGFEERIKGRGLVIWGWAPQ-VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF----GDQFMNEK 396 (492)
Q Consensus 322 ~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~----~DQ~~na~ 396 (492)
.+. +.+.+ +..+.|+.+.+|+++ .++|+.+|+ +|||+|.+|++|++++|+|+|.+|+. .+|..||+
T Consensus 223 ~~~-----~~~~~--~~~~~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~ 293 (365)
T 3s2u_A 223 AEI-----TAERY--RTVAVEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAE 293 (365)
T ss_dssp HHH-----HHHHH--HHTTCCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHH
T ss_pred ccc-----cccee--cccccccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHH
Confidence 211 11111 123568888999998 469999999 99999999999999999999999974 58999999
Q ss_pred HHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 397 LVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 397 rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
.+ ++.|+|+.++.. .++++.|.++|.++++|++..+.|.++++++
T Consensus 294 ~l-~~~G~a~~l~~~-------------~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~ 338 (365)
T 3s2u_A 294 FL-VRSGAGRLLPQK-------------STGAAELAAQLSEVLMHPETLRSMADQARSL 338 (365)
T ss_dssp HH-HTTTSEEECCTT-------------TCCHHHHHHHHHHHHHCTHHHHHHHHHHHHT
T ss_pred HH-HHCCCEEEeecC-------------CCCHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 99 599999999876 4899999999999999986555555555444
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=203.64 Aligned_cols=162 Identities=23% Similarity=0.432 Sum_probs=137.7
Q ss_pred chhhhcccccCCCCCeEEEEeeCCCcC-CCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCee
Q 011142 266 DEHQCLKWLDSKAPKSVVYACLGSLCN-LIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLV 344 (492)
Q Consensus 266 ~~~~l~~~l~~~~~~~~Vyvs~Gs~~~-~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~ 344 (492)
++.++.+|++..+++++||+++||... ...+.+..+++++++.+++++|..++.... . + +.|++
T Consensus 7 l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~----~--~---------~~~v~ 71 (170)
T 2o6l_A 7 LPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKPD----T--L---------GLNTR 71 (170)
T ss_dssp CCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCCT----T--C---------CTTEE
T ss_pred CCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCcc----c--C---------CCcEE
Confidence 578899999876667899999999874 567778889999998899999998765311 0 2 45899
Q ss_pred eecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccccccccccc
Q 011142 345 IWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGV 424 (492)
Q Consensus 345 ~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~ 424 (492)
+.+|+||.++|.|+.+++||||||+||++|++++|+|+|++|...||..||.++ ++.|+|+.++..
T Consensus 72 ~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l-~~~g~g~~~~~~------------- 137 (170)
T 2o6l_A 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHM-KARGAAVRVDFN------------- 137 (170)
T ss_dssp EESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH-HTTTSEEECCTT-------------
T ss_pred EecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHH-HHcCCeEEeccc-------------
Confidence 999999999996666666999999999999999999999999999999999999 599999998865
Q ss_pred ccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Q 011142 425 LMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMAN 460 (492)
Q Consensus 425 ~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~ 460 (492)
.++.++|.++|.++++|+ +|++++++++++++
T Consensus 138 ~~~~~~l~~~i~~ll~~~----~~~~~a~~~~~~~~ 169 (170)
T 2o6l_A 138 TMSSTDLLNALKRVINDP----SYKENVMKLSRIQH 169 (170)
T ss_dssp TCCHHHHHHHHHHHHHCH----HHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHhh
Confidence 489999999999999987 89999999998876
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.85 E-value=4.5e-20 Score=182.43 Aligned_cols=311 Identities=13% Similarity=0.070 Sum_probs=191.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDM 87 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 87 (492)
|||++++.+..||..+++.||++|+++||+|++++...... ..... ..++.++.++.. .++.. ..
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~--~~~~~-----~~g~~~~~~~~~----~~~~~----~~ 71 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME--ADLVP-----KHGIEIDFIRIS----GLRGK----GI 71 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH--HHHGG-----GGTCEEEECCCC----CCTTC----CH
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcch--hhhcc-----ccCCceEEecCC----ccCcC----cc
Confidence 89999997778999999999999999999999999865321 11111 125666665432 11110 00
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhhhcccccc
Q 011142 88 VASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTCCFCLVCYNNLFTSKVF 165 (492)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (492)
. ..+..... .......+.+++++ .+||+|+++.... .+..+++.+|+|++......
T Consensus 72 ~---~~~~~~~~-~~~~~~~l~~~l~~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------- 129 (364)
T 1f0k_A 72 K---ALIAAPLR-IFNAWRQARAIMKA--YKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG---------------- 129 (364)
T ss_dssp H---HHHTCHHH-HHHHHHHHHHHHHH--HCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSS----------------
T ss_pred H---HHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCC----------------
Confidence 0 00000011 11234456777887 7999999986542 45667889999998632211
Q ss_pred ccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcCCcEEEecc
Q 011142 166 ESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGP 245 (492)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp 245 (492)
.++. .... ..+.++.+++.+... + +++..+|.
T Consensus 130 -----------~~~~------------------~~~~------~~~~~d~v~~~~~~~------------~-~~~~~i~n 161 (364)
T 1f0k_A 130 -----------IAGL------------------TNKW------LAKIATKVMQAFPGA------------F-PNAEVVGN 161 (364)
T ss_dssp -----------SCCH------------------HHHH------HTTTCSEEEESSTTS------------S-SSCEECCC
T ss_pred -----------CCcH------------------HHHH------HHHhCCEEEecChhh------------c-CCceEeCC
Confidence 0000 0000 112345555433111 2 24556664
Q ss_pred CCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC--CCCeEEEEeCCCcch
Q 011142 246 VSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS--NRPFIWVIREGETSK 323 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~--~~~vv~~~~~~~~~~ 323 (492)
...... . . +......+...+++++|++..|+... ......+++++..+ +.++++.+|... .+
T Consensus 162 ~v~~~~-----~-~-------~~~~~~~~~~~~~~~~il~~~g~~~~--~k~~~~li~a~~~l~~~~~~l~i~G~~~-~~ 225 (364)
T 1f0k_A 162 PVRTDV-----L-A-------LPLPQQRLAGREGPVRVLVVGGSQGA--RILNQTMPQVAAKLGDSVTIWHQSGKGS-QQ 225 (364)
T ss_dssp CCCHHH-----H-T-------SCCHHHHHTTCCSSEEEEEECTTTCC--HHHHHHHHHHHHHHGGGEEEEEECCTTC-HH
T ss_pred ccchhh-----c-c-------cchhhhhcccCCCCcEEEEEcCchHh--HHHHHHHHHHHHHhcCCcEEEEEcCCch-HH
Confidence 321100 0 0 00011111222345677777788653 44455566777654 456667666554 22
Q ss_pred hhhhccchhhHHHHhcCCCeeeecCCch-hhcccCCCccccccccCchhhHHHHhcCCCeeccCCc---cccchhHHHHH
Q 011142 324 ELKKWVVEDGFEERIKGRGLVIWGWAPQ-VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF---GDQFMNEKLVV 399 (492)
Q Consensus 324 ~~~~~~lp~~~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~---~DQ~~na~rv~ 399 (492)
. +.+ ...+....|+.+.+|+++ ..+++.+++ +|+++|.+++.||+++|+|+|+.|.. .||..|+..+.
T Consensus 226 ~-----l~~-~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~ 297 (364)
T 1f0k_A 226 S-----VEQ-AYAEAGQPQHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLE 297 (364)
T ss_dssp H-----HHH-HHHHTTCTTSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHH
T ss_pred H-----HHH-HHhhcCCCceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHH
Confidence 1 211 111122258999999965 679999999 99999999999999999999999987 79999999994
Q ss_pred HHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccCh
Q 011142 400 QILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGK 443 (492)
Q Consensus 400 e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~ 443 (492)
+.|.|..++.. ..+.++++++|.++ |++
T Consensus 298 -~~g~g~~~~~~-------------d~~~~~la~~i~~l--~~~ 325 (364)
T 1f0k_A 298 -KAGAAKIIEQP-------------QLSVDAVANTLAGW--SRE 325 (364)
T ss_dssp -HTTSEEECCGG-------------GCCHHHHHHHHHTC--CHH
T ss_pred -hCCcEEEeccc-------------cCCHHHHHHHHHhc--CHH
Confidence 99999988765 37799999999988 663
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.66 E-value=2.8e-15 Score=141.01 Aligned_cols=118 Identities=6% Similarity=-0.001 Sum_probs=89.4
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCchh-hccc
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQV-LILS 356 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~-~lL~ 356 (492)
..+.|+|++|.... ......+++++.... ++.+..+.... ..+.+.... ..+|+.+..|+++. +++.
T Consensus 156 ~~~~ILv~~GG~d~--~~l~~~vl~~L~~~~-~i~vv~G~~~~--------~~~~l~~~~~~~~~v~v~~~~~~m~~~m~ 224 (282)
T 3hbm_A 156 KKYDFFICMGGTDI--KNLSLQIASELPKTK-IISIATSSSNP--------NLKKLQKFAKLHNNIRLFIDHENIAKLMN 224 (282)
T ss_dssp CCEEEEEECCSCCT--TCHHHHHHHHSCTTS-CEEEEECTTCT--------THHHHHHHHHTCSSEEEEESCSCHHHHHH
T ss_pred cCCeEEEEECCCch--hhHHHHHHHHhhcCC-CEEEEECCCch--------HHHHHHHHHhhCCCEEEEeCHHHHHHHHH
Confidence 45689999997543 235556777776543 56666655532 112222221 23589999999985 5999
Q ss_pred CCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeeccc
Q 011142 357 HPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVE 411 (492)
Q Consensus 357 ~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 411 (492)
.+++ +||+|| +|++|+++.|+|+|.+|...+|..||..+ ++.|++..+..-
T Consensus 225 ~aDl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l-~~~G~~~~~~~~ 275 (282)
T 3hbm_A 225 ESNK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWL-AKKGYEVEYKYL 275 (282)
T ss_dssp TEEE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHH-HHTTCEEECGGG
T ss_pred HCCE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHCCCEEEcchh
Confidence 9999 999999 89999999999999999999999999999 599999988764
No 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.56 E-value=7.3e-15 Score=132.48 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=88.2
Q ss_pred CCCeEEEEeeCCCcCCCHHhHHHH-----HHHHHhCC-CCeEEEEeCCCcchhhhhccchhhHHHHh-------------
Q 011142 278 APKSVVYACLGSLCNLIPSQMREL-----GLGLEASN-RPFIWVIREGETSKELKKWVVEDGFEERI------------- 338 (492)
Q Consensus 278 ~~~~~Vyvs~Gs~~~~~~~~~~~~-----~~a~~~~~-~~vv~~~~~~~~~~~~~~~~lp~~~~~~~------------- 338 (492)
+++++|||+.||... -.+.+..+ ++++...+ .++++++|..... ..+......
T Consensus 26 ~~~~~VlVtgGS~~~-~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~-------~~~~~~~~~~~~~~~~l~p~~~ 97 (224)
T 2jzc_A 26 IEEKALFVTCGATVP-FPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSS-------EFEHLVQERGGQRESQKIPIDQ 97 (224)
T ss_dssp CCSCCEEEECCSCCS-CHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCC-------CCCSHHHHHTCEECSCCCSSCT
T ss_pred CCCCEEEEEcCCchH-HHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchh-------hHHHHHHhhhcccccccccccc
Confidence 356799999999743 23333333 47787777 7999999876430 001110000
Q ss_pred --------------cCCCeeeecCCchh-hccc-CCCccccccccCchhhHHHHhcCCCeeccCCc----cccchhHHHH
Q 011142 339 --------------KGRGLVIWGWAPQV-LILS-HPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLF----GDQFMNEKLV 398 (492)
Q Consensus 339 --------------~~~nv~~~~~~pq~-~lL~-~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~----~DQ~~na~rv 398 (492)
..-++.+.+|+++. ++|+ .+++ +|||||.||++|++++|+|+|++|.. .||..||+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l 175 (224)
T 2jzc_A 98 FGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKF 175 (224)
T ss_dssp TCTTCSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHH
T ss_pred ccccccccccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHH
Confidence 01245677898885 7999 9999 99999999999999999999999974 3699999999
Q ss_pred HHHhccceee
Q 011142 399 VQILKIGVKV 408 (492)
Q Consensus 399 ~e~~G~G~~l 408 (492)
++.|+|+.+
T Consensus 176 -~~~G~~~~~ 184 (224)
T 2jzc_A 176 -VELGYVWSC 184 (224)
T ss_dssp -HHHSCCCEE
T ss_pred -HHCCCEEEc
Confidence 599998765
No 25
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.46 E-value=3.8e-11 Score=119.23 Aligned_cols=352 Identities=11% Similarity=0.030 Sum_probs=190.6
Q ss_pred CCCccEEEEecC--C--CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCC
Q 011142 4 QANQLHFVLFPF--L--AQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLP 79 (492)
Q Consensus 4 ~~~~~~il~~~~--~--~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 79 (492)
|++||||++++. + ..|.-..+..|++.| +||+|++++........... . ...++.+..++....
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~----- 68 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAY-D----KTLDYEVIRWPRSVM----- 68 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHH-H----TTCSSEEEEESSSSC-----
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhh-c----cccceEEEEcccccc-----
Confidence 466889999984 3 478888899999999 79999999986544321111 1 223566666542100
Q ss_pred CCCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHh
Q 011142 80 EGCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTCCFCLVCYN 157 (492)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 157 (492)
. ... .....+.+++++ .+||+|++..... ....+++.+|+|.+++.........
T Consensus 69 --------~---~~~--------~~~~~l~~~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--- 124 (394)
T 3okp_A 69 --------L---PTP--------TTAHAMAEIIRE--REIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGW--- 124 (394)
T ss_dssp --------C---SCH--------HHHHHHHHHHHH--TTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHH---
T ss_pred --------c---cch--------hhHHHHHHHHHh--cCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhh---
Confidence 0 000 233456778888 8999999866543 4455688899995543222111100
Q ss_pred hhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhc-
Q 011142 158 NLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIR- 236 (492)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~- 236 (492)
. .. ....... ....+.++.++..|-...+ .+....
T Consensus 125 ---------------------~-~~--------------~~~~~~~---~~~~~~~d~ii~~s~~~~~-----~~~~~~~ 160 (394)
T 3okp_A 125 ---------------------S-ML--------------PGSRQSL---RKIGTEVDVLTYISQYTLR-----RFKSAFG 160 (394)
T ss_dssp ---------------------T-TS--------------HHHHHHH---HHHHHHCSEEEESCHHHHH-----HHHHHHC
T ss_pred ---------------------h-hc--------------chhhHHH---HHHHHhCCEEEEcCHHHHH-----HHHHhcC
Confidence 0 00 0011111 1123446777777743322 333322
Q ss_pred -CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CC
Q 011142 237 -HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS-----NR 310 (492)
Q Consensus 237 -~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~ 310 (492)
..++..+..-.....-.. ........+.+.+.-. ++..+++..|+... ...+..+++++..+ +.
T Consensus 161 ~~~~~~vi~ngv~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~ 230 (394)
T 3okp_A 161 SHPTFEHLPSGVDVKRFTP-------ATPEDKSATRKKLGFT-DTTPVIACNSRLVP--RKGQDSLIKAMPQVIAARPDA 230 (394)
T ss_dssp SSSEEEECCCCBCTTTSCC-------CCHHHHHHHHHHTTCC-TTCCEEEEESCSCG--GGCHHHHHHHHHHHHHHSTTC
T ss_pred CCCCeEEecCCcCHHHcCC-------CCchhhHHHHHhcCCC-cCceEEEEEecccc--ccCHHHHHHHHHHHHhhCCCe
Confidence 246666653322111000 0000112333333322 22245666777642 33455555655432 45
Q ss_pred CeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchh---hcccCCCcccccc-----------ccCchhhHHHH
Q 011142 311 PFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQV---LILSHPSIGGFLT-----------HCGWNSTIEGV 376 (492)
Q Consensus 311 ~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~lL~~~~~~~~It-----------HgG~~s~~Eal 376 (492)
++++. |.+.....+.. +. .....|+.+.+|+|+. .++..+++ +|. -|..+++.||+
T Consensus 231 ~l~i~-G~g~~~~~l~~--~~-----~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~~Ea~ 300 (394)
T 3okp_A 231 QLLIV-GSGRYESTLRR--LA-----TDVSQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVYLEAQ 300 (394)
T ss_dssp EEEEE-CCCTTHHHHHH--HT-----GGGGGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHHHHHH
T ss_pred EEEEE-cCchHHHHHHH--HH-----hcccCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCcHHHHHH
Confidence 55544 43332222211 00 0114689999999754 37889998 775 55567999999
Q ss_pred hcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHH
Q 011142 377 SAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLG 456 (492)
Q Consensus 377 ~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~ 456 (492)
++|+|+|+.+..+ ....+ ..|.|..++. -+.+++.++|.++++|++..+.+.+++++..
T Consensus 301 a~G~PvI~~~~~~----~~e~i--~~~~g~~~~~---------------~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 359 (394)
T 3okp_A 301 ACGVPVIAGTSGG----APETV--TPATGLVVEG---------------SDVDKLSELLIELLDDPIRRAAMGAAGRAHV 359 (394)
T ss_dssp HTTCCEEECSSTT----GGGGC--CTTTEEECCT---------------TCHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEeCCCC----hHHHH--hcCCceEeCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999977532 33333 2336766654 4689999999999998755555555555443
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhc
Q 011142 457 QMANMAVQEGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 457 ~~~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (492)
+. .-+....++++++-+.+.
T Consensus 360 ~~-------~~s~~~~~~~~~~~~~~~ 379 (394)
T 3okp_A 360 EA-------EWSWEIMGERLTNILQSE 379 (394)
T ss_dssp HH-------HTBHHHHHHHHHHHHHSC
T ss_pred HH-------hCCHHHHHHHHHHHHHHh
Confidence 32 233344455555555543
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.41 E-value=8.7e-12 Score=123.36 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=83.5
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch-
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ- 351 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq- 351 (492)
++++|+++.|...... .+..+++|+..+ +.++++..+.+.. +-+.+.... ...++++.+++++
T Consensus 197 ~~~~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~--------~~~~l~~~~~~~~~v~~~g~~g~~ 266 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLNPV--------VREAVFPVLKGVRNFVLLDPLEYG 266 (376)
T ss_dssp SSCEEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSCHH--------HHHHHHHHHTTCTTEEEECCCCHH
T ss_pred CCCEEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCCHH--------HHHHHHHHhccCCCEEEECCCCHH
Confidence 3456777777553221 456677776542 4555554443321 111121211 1358888866554
Q ss_pred --hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 352 --VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 352 --~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
..+++.+++ ||+.+| |.+.||+++|+|+|+.+...++.. +. +.|.|+.++ .+.+
T Consensus 267 ~~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~----~~-~~g~g~lv~----------------~d~~ 322 (376)
T 1v4v_A 267 SMAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPE----GL-KAGILKLAG----------------TDPE 322 (376)
T ss_dssp HHHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHH----HH-HHTSEEECC----------------SCHH
T ss_pred HHHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchh----hh-cCCceEECC----------------CCHH
Confidence 579999999 999884 446699999999999876666554 33 567776552 3689
Q ss_pred HHHHHHHHHhccC
Q 011142 430 DVRNAVEKLMDEG 442 (492)
Q Consensus 430 ~l~~ai~~ll~~~ 442 (492)
+|+++|.++++|+
T Consensus 323 ~la~~i~~ll~d~ 335 (376)
T 1v4v_A 323 GVYRVVKGLLENP 335 (376)
T ss_dssp HHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999999886
No 27
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.40 E-value=1.8e-10 Score=116.19 Aligned_cols=358 Identities=14% Similarity=0.096 Sum_probs=180.8
Q ss_pred CCCccEEEEecC---C--------CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCC
Q 011142 4 QANQLHFVLFPF---L--------AQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLP 72 (492)
Q Consensus 4 ~~~~~~il~~~~---~--------~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~ 72 (492)
..+||||++++. | ..|+-..+..|++.|.++||+|++++.......-. . .....++.++.++..
T Consensus 17 ~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-~----~~~~~~v~v~~~~~~ 91 (438)
T 3c48_A 17 RGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE-I----VRVAENLRVINIAAG 91 (438)
T ss_dssp --CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS-E----EEEETTEEEEEECCS
T ss_pred CcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc-c----ccccCCeEEEEecCC
Confidence 366899999995 2 36888899999999999999999998754211100 0 001125666666432
Q ss_pred ccccCCCCCCCccccccccchHHHHHHHHhhhhHHHHHH-HHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecch
Q 011142 73 CEEAGLPEGCENLDMVASLGLAFDFFTAADMLQEPVENF-FAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~ 149 (492)
... ... . ......+..+ ...+.+. ++.. .+||+|++..... .+..+++.+|+|+|......
T Consensus 92 ~~~-----~~~-~--~~~~~~~~~~-------~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 155 (438)
T 3c48_A 92 PYE-----GLS-K--EELPTQLAAF-------TGGMLSFTRREK-VTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTL 155 (438)
T ss_dssp CSS-----SCC-G--GGGGGGHHHH-------HHHHHHHHHHHT-CCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred Ccc-----ccc-h--hHHHHHHHHH-------HHHHHHHHHhcc-CCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCC
Confidence 110 000 0 0001111111 1122223 4441 2599999875322 33456778899998765443
Q ss_pred HHHHHHHhhhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHH
Q 011142 150 CFCLVCYNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYI 229 (492)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 229 (492)
..... ..+... ........... .....+.++.+++.+-...+
T Consensus 156 ~~~~~-----------------------~~~~~~---------~~~~~~~~~~~--~~~~~~~~d~ii~~s~~~~~---- 197 (438)
T 3c48_A 156 AAVKN-----------------------SYRDDS---------DTPESEARRIC--EQQLVDNADVLAVNTQEEMQ---- 197 (438)
T ss_dssp HHHHS-----------------------CC-------------CCHHHHHHHHH--HHHHHHHCSEEEESSHHHHH----
T ss_pred ccccc-----------------------cccccc---------CCcchHHHHHH--HHHHHhcCCEEEEcCHHHHH----
Confidence 21100 000000 00000000000 11123446777777744322
Q ss_pred HHHHhhcC---CcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH
Q 011142 230 KEYKKIRH---DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLE 306 (492)
Q Consensus 230 ~~~~~~~~---~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~ 306 (492)
.+...++ .++..|..-.....-. . ........+.+.+.-.+++ .+++..|+... ...+..+++++.
T Consensus 198 -~~~~~~g~~~~k~~vi~ngvd~~~~~-~------~~~~~~~~~r~~~~~~~~~-~~i~~~G~~~~--~Kg~~~li~a~~ 266 (438)
T 3c48_A 198 -DLMHHYDADPDRISVVSPGADVELYS-P------GNDRATERSRRELGIPLHT-KVVAFVGRLQP--FKGPQVLIKAVA 266 (438)
T ss_dssp -HHHHHHCCCGGGEEECCCCCCTTTSC-C------C----CHHHHHHTTCCSSS-EEEEEESCBSG--GGCHHHHHHHHH
T ss_pred -HHHHHhCCChhheEEecCCccccccC-C------cccchhhhhHHhcCCCCCC-cEEEEEeeecc--cCCHHHHHHHHH
Confidence 2322221 3566665332211100 0 0000001122222221223 45666787653 234455555555
Q ss_pred hC-----CCCeEE-EEeCCCcchhhhhccchhhHHH---Hh-cCCCeeeecCCch---hhcccCCCccccccc----cCc
Q 011142 307 AS-----NRPFIW-VIREGETSKELKKWVVEDGFEE---RI-KGRGLVIWGWAPQ---VLILSHPSIGGFLTH----CGW 369 (492)
Q Consensus 307 ~~-----~~~vv~-~~~~~~~~~~~~~~~lp~~~~~---~~-~~~nv~~~~~~pq---~~lL~~~~~~~~ItH----gG~ 369 (492)
.+ +.++-+ .+|....... ..+.+.+ +. ...|+.+.+|+|+ ..+++.+++ +|.- |..
T Consensus 267 ~l~~~~p~~~~~l~i~G~~~~~g~-----~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~ 339 (438)
T 3c48_A 267 ALFDRDPDRNLRVIICGGPSGPNA-----TPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADI--VAVPSFNESFG 339 (438)
T ss_dssp HHHHHCTTCSEEEEEECCBC-----------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSE--EEECCSCCSSC
T ss_pred HHHhhCCCcceEEEEEeCCCCCCc-----HHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCE--EEECccccCCc
Confidence 32 123333 3333110000 1112221 11 2468999999986 458889998 7654 334
Q ss_pred hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHH
Q 011142 370 NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERR 449 (492)
Q Consensus 370 ~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~ 449 (492)
+++.||+++|+|+|+.+. ......+ ++.+.|+.++. -+.++++++|.++++|++..+.+.
T Consensus 340 ~~~~Eama~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~---------------~d~~~la~~i~~l~~~~~~~~~~~ 399 (438)
T 3c48_A 340 LVAMEAQASGTPVIAARV----GGLPIAV-AEGETGLLVDG---------------HSPHAWADALATLLDDDETRIRMG 399 (438)
T ss_dssp HHHHHHHHTTCCEEEESC----TTHHHHS-CBTTTEEEESS---------------CCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHcCCCEEecCC----CChhHHh-hCCCcEEECCC---------------CCHHHHHHHHHHHHcCHHHHHHHH
Confidence 689999999999999764 3445555 35556776654 468999999999999876666666
Q ss_pred HHHHHHHHH
Q 011142 450 NRAVKLGQM 458 (492)
Q Consensus 450 ~~a~~l~~~ 458 (492)
+++++..+.
T Consensus 400 ~~~~~~~~~ 408 (438)
T 3c48_A 400 EDAVEHART 408 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 28
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.37 E-value=4.4e-11 Score=119.32 Aligned_cols=325 Identities=14% Similarity=0.103 Sum_probs=170.5
Q ss_pred CCccEEEEecCC---C-cCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC
Q 011142 5 ANQLHFVLFPFL---A-QGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 5 ~~~~~il~~~~~---~-~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 80 (492)
.+||||+++... . .|.-..+..|++.|.++||+|++++............. .+ + .++.++ .
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~----~~-~-~~~~~~---------~ 82 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVV----SG-G-KAVPIP---------Y 82 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEE----EC-C-CCC-------------
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccc----cC-C-cEEecc---------c
Confidence 458999999842 2 56668899999999999999999998643221111000 00 0 111111 0
Q ss_pred CCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhh
Q 011142 81 GCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFHGTCCFCLVCYNN 158 (492)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 158 (492)
. .... . + .........+.+++++ .+||+|++..... .+..++...|+|+|.........
T Consensus 83 ~----~~~~--~----~-~~~~~~~~~l~~~l~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------ 143 (406)
T 2gek_A 83 N----GSVA--R----L-RFGPATHRKVKKWIAE--GDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTK------ 143 (406)
T ss_dssp -------------------CCHHHHHHHHHHHHH--HCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCS------
T ss_pred c----CCcc--c----c-cccHHHHHHHHHHHHh--cCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchh------
Confidence 0 0000 0 0 0000123456777777 7999999876544 34566777899999754431000
Q ss_pred hccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcC-
Q 011142 159 LFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRH- 237 (492)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~- 237 (492)
.. ........+....+.++.++..+-... ..+...++
T Consensus 144 --------------~~-----------------------~~~~~~~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~ 181 (406)
T 2gek_A 144 --------------SL-----------------------TLSVFQGILRPYHEKIIGRIAVSDLAR-----RWQMEALGS 181 (406)
T ss_dssp --------------HH-----------------------HHHHHHSTTHHHHTTCSEEEESSHHHH-----HHHHHHHSS
T ss_pred --------------hh-----------------------hHHHHHHHHHHHHhhCCEEEECCHHHH-----HHHHHhcCC
Confidence 00 000000001123456777777773332 23333333
Q ss_pred CcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCC-cCCCHHhHHHHHHHHHhC-----CCC
Q 011142 238 DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSL-CNLIPSQMRELGLGLEAS-----NRP 311 (492)
Q Consensus 238 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~-~~~~~~~~~~~~~a~~~~-----~~~ 311 (492)
.++ .+..-... . ... +..-..-+. .++ .+++..|+. .. ...+..+++++..+ +.+
T Consensus 182 ~~~-vi~~~v~~-~----~~~--------~~~~~~~~~--~~~-~~i~~~G~~~~~--~Kg~~~li~a~~~l~~~~~~~~ 242 (406)
T 2gek_A 182 DAV-EIPNGVDV-A----SFA--------DAPLLDGYP--REG-RTVLFLGRYDEP--RKGMAVLLAALPKLVARFPDVE 242 (406)
T ss_dssp CEE-ECCCCBCH-H----HHH--------TCCCCTTCS--CSS-CEEEEESCTTSG--GGCHHHHHHHHHHHHTTSTTCE
T ss_pred CcE-EecCCCCh-h----hcC--------CCchhhhcc--CCC-eEEEEEeeeCcc--ccCHHHHHHHHHHHHHHCCCeE
Confidence 334 44422110 0 000 000000011 012 355667776 32 33445555555543 344
Q ss_pred eEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchh---hcccCCCcccccc----ccCc-hhhHHHHhcCCCee
Q 011142 312 FIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQV---LILSHPSIGGFLT----HCGW-NSTIEGVSAGLPLL 383 (492)
Q Consensus 312 vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~lL~~~~~~~~It----HgG~-~s~~Eal~~GvP~v 383 (492)
+++. |.... ..+.. +.. +. ..|+.+.+|+++. .++..+++ +|. +.|. +++.||+++|+|+|
T Consensus 243 l~i~-G~~~~-~~l~~--~~~----~~-~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~e~~~~~~~Ea~a~G~PvI 311 (406)
T 2gek_A 243 ILIV-GRGDE-DELRE--QAG----DL-AGHLRFLGQVDDATKASAMRSADV--YCAPHLGGESFGIVLVEAMAAGTAVV 311 (406)
T ss_dssp EEEE-SCSCH-HHHHH--HTG----GG-GGGEEECCSCCHHHHHHHHHHSSE--EEECCCSCCSSCHHHHHHHHHTCEEE
T ss_pred EEEE-cCCcH-HHHHH--HHH----hc-cCcEEEEecCCHHHHHHHHHHCCE--EEecCCCCCCCchHHHHHHHcCCCEE
Confidence 4433 33322 22211 111 11 4689999999974 68899999 663 3344 58999999999999
Q ss_pred ccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 384 TWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 384 ~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
+.+. ......+ ++.+.|...+. -+.+++.++|.++++|++..+.+.+++++.
T Consensus 312 ~~~~----~~~~e~i-~~~~~g~~~~~---------------~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 363 (406)
T 2gek_A 312 ASDL----DAFRRVL-ADGDAGRLVPV---------------DDADGMAAALIGILEDDQLRAGYVARASER 363 (406)
T ss_dssp ECCC----HHHHHHH-TTTTSSEECCT---------------TCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EecC----CcHHHHh-cCCCceEEeCC---------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9765 4455555 45567776654 468999999999999874444444444433
No 29
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.33 E-value=5.9e-10 Score=114.57 Aligned_cols=375 Identities=13% Similarity=0.074 Sum_probs=181.9
Q ss_pred CCCCCCccEEEEecCC---------------CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH---HHhhhhcCC
Q 011142 1 MDTQANQLHFVLFPFL---------------AQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI---LARAIESGL 62 (492)
Q Consensus 1 m~~~~~~~~il~~~~~---------------~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~---~~~~~~~~~ 62 (492)
|..|.++|||++++.. ..|.-..+..|++.|+++||+|++++........... .... ....
T Consensus 1 m~~m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (499)
T 2r60_A 1 MVEMTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYY-QETN 79 (499)
T ss_dssp ------CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEEC-TTCS
T ss_pred CccccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhc-cCCC
Confidence 7777778999999852 3667788999999999999999999864321110000 0000 0023
Q ss_pred ceEEEEecCCccccCCCCCCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCC
Q 011142 63 QIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNI 140 (492)
Q Consensus 63 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgi 140 (492)
++.++.++.... ...... ....... .....+.+++++...+||+|.+-.... .+..+++.+|+
T Consensus 80 gv~v~~~~~~~~------~~~~~~--~~~~~~~-------~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~ 144 (499)
T 2r60_A 80 KVRIVRIPFGGD------KFLPKE--ELWPYLH-------EYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGL 144 (499)
T ss_dssp SEEEEEECCSCS------SCCCGG--GCGGGHH-------HHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEecCCCc------CCcCHH--HHHHHHH-------HHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCC
Confidence 577777653211 000000 0001111 111234455554224899999865322 33456788999
Q ss_pred CeEEEecchHHHHHHHhhhccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcC
Q 011142 141 PRITFHGTCCFCLVCYNNLFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNS 220 (492)
Q Consensus 141 P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (492)
|+|............ .. ...+... ..+...++ +...........+.++.++..|
T Consensus 145 p~v~~~H~~~~~~~~--~~----------------~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~ad~vi~~S 198 (499)
T 2r60_A 145 PFTFTGHSLGAQKME--KL----------------NVNTSNF------KEMDERFK--FHRRIIAERLTMSYADKIIVST 198 (499)
T ss_dssp CEEEECSSCHHHHHH--TT----------------CCCSTTS------HHHHHHHC--HHHHHHHHHHHHHHCSEEEESS
T ss_pred cEEEEccCcccccch--hh----------------ccCCCCc------chhhhhHH--HHHHHHHHHHHHhcCCEEEECC
Confidence 998754443222110 00 0000000 00000000 0000000112334567777777
Q ss_pred hhhhcHHHHHHHHhh--cC--------CcEEEeccCCCCCcccchhhhcCCCCCcchhhhccccc-----CCCCCeEEEE
Q 011142 221 FEELEPAYIKEYKKI--RH--------DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLD-----SKAPKSVVYA 285 (492)
Q Consensus 221 ~~~l~~~~~~~~~~~--~~--------~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~~Vyv 285 (492)
-...+ .+... ++ .++..|..-+.... ... .........+.+-+. ..+++ .+++
T Consensus 199 ~~~~~-----~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~-~~~-----~~~~~~~~~~r~~~~~~~~~~~~~~-~~i~ 266 (499)
T 2r60_A 199 SQERF-----GQYSHDLYRGAVNVEDDDKFSVIPPGVNTRV-FDG-----EYGDKIKAKITKYLERDLGSERMEL-PAII 266 (499)
T ss_dssp HHHHH-----HTTTSGGGTTTCCTTCGGGEEECCCCBCTTT-SSS-----CCCHHHHHHHHHHHHHHSCGGGTTS-CEEE
T ss_pred HHHHH-----HHHhhhcccccccccCCCCeEEECCCcChhh-cCc-----cchhhhHHHHHHHhcccccccCCCC-cEEE
Confidence 43322 22222 21 34555542211100 000 000000012222221 11123 3556
Q ss_pred eeCCCcCCCHHhHHHHHHHHHhCCC----C-eEEEEeCCCcc----hh--------hhhccchhhHHHHh-cCCCeeeec
Q 011142 286 CLGSLCNLIPSQMRELGLGLEASNR----P-FIWVIREGETS----KE--------LKKWVVEDGFEERI-KGRGLVIWG 347 (492)
Q Consensus 286 s~Gs~~~~~~~~~~~~~~a~~~~~~----~-vv~~~~~~~~~----~~--------~~~~~lp~~~~~~~-~~~nv~~~~ 347 (492)
..|... ....+..+++|+..+.. . .++.+|..... .. ..+ +- ....+. ...+|.+.+
T Consensus 267 ~vGrl~--~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~--l~-~~~~~~~l~~~V~~~G 341 (499)
T 2r60_A 267 ASSRLD--QKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGK--II-ELIDNNDCRGKVSMFP 341 (499)
T ss_dssp ECSCCC--GGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHH--HH-HHHHHTTCBTTEEEEE
T ss_pred EeecCc--cccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHH--HH-HHHHhcCCCceEEECC
Confidence 667754 34457778888876532 2 34555542111 00 001 11 111111 246899999
Q ss_pred CCchh---hcccCC----Cccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccc
Q 011142 348 WAPQV---LILSHP----SIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIW 416 (492)
Q Consensus 348 ~~pq~---~lL~~~----~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 416 (492)
++|+. .+++.+ ++ +|.- |-.+++.||+++|+|+|+... ......+ +.-..|+.++.
T Consensus 342 ~v~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v-~~~~~g~l~~~------ 408 (499)
T 2r60_A 342 LNSQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEIL-DGGKYGVLVDP------ 408 (499)
T ss_dssp CCSHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHT-GGGTSSEEECT------
T ss_pred CCCHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHh-cCCceEEEeCC------
Confidence 99754 478888 87 6632 334689999999999999753 3444555 35457777755
Q ss_pred ccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHH
Q 011142 417 GEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLG 456 (492)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~ 456 (492)
-+.++++++|.++++|++..+.+.+++++..
T Consensus 409 ---------~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 439 (499)
T 2r60_A 409 ---------EDPEDIARGLLKAFESEETWSAYQEKGKQRV 439 (499)
T ss_dssp ---------TCHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4689999999999998754555555555443
No 30
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.32 E-value=4.9e-11 Score=118.20 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=84.9
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeCCCcchhhhhccchhhHHHHhc-CCCeeeecCCch-
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIREGETSKELKKWVVEDGFEERIK-GRGLVIWGWAPQ- 351 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq- 351 (492)
++++|+++.|...... ..+..+++|+..+ +.++++..+.... +-+.+.+... ..|+.+.+++++
T Consensus 204 ~~~~vl~~~gr~~~~~-kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~--------~~~~l~~~~~~~~~v~~~g~~~~~ 274 (384)
T 1vgv_A 204 DKKMILVTGHRRESFG-RGFEEICHALADIATTHQDIQIVYPVHLNPN--------VREPVNRILGHVKNVILIDPQEYL 274 (384)
T ss_dssp TSEEEEEECCCBSSCC-HHHHHHHHHHHHHHHHCTTEEEEEECCBCHH--------HHHHHHHHHTTCTTEEEECCCCHH
T ss_pred CCCEEEEEeCCccccc-hHHHHHHHHHHHHHhhCCCeEEEEEcCCCHH--------HHHHHHHHhhcCCCEEEeCCCCHH
Confidence 4567888888765422 3455566666542 4555554332210 1111111111 358888666654
Q ss_pred --hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 352 --VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 352 --~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
..+++.+++ ||+..|. .+.||+++|+|+|+.+..++. ..+. +.|.|+.++. +.+
T Consensus 275 ~~~~~~~~ad~--~v~~Sg~-~~lEA~a~G~PvI~~~~~~~~----~e~v-~~g~g~lv~~----------------d~~ 330 (384)
T 1vgv_A 275 PFVWLMNHAWL--ILTDSGG-IQEEAPSLGKPVLVMRDTTER----PEAV-TAGTVRLVGT----------------DKQ 330 (384)
T ss_dssp HHHHHHHHCSE--EEESSST-GGGTGGGGTCCEEEESSCCSC----HHHH-HHTSEEEECS----------------SHH
T ss_pred HHHHHHHhCcE--EEECCcc-hHHHHHHcCCCEEEccCCCCc----chhh-hCCceEEeCC----------------CHH
Confidence 568999999 9998854 488999999999999864432 3343 6677776622 588
Q ss_pred HHHHHHHHHhccCh
Q 011142 430 DVRNAVEKLMDEGK 443 (492)
Q Consensus 430 ~l~~ai~~ll~~~~ 443 (492)
+|+++|.++++|++
T Consensus 331 ~la~~i~~ll~d~~ 344 (384)
T 1vgv_A 331 RIVEEVTRLLKDEN 344 (384)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhChH
Confidence 99999999998863
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.30 E-value=2.5e-10 Score=113.62 Aligned_cols=329 Identities=11% Similarity=0.069 Sum_probs=168.1
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhhhHHHhhhhcCCceE-EEEecCCccccCCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFNGILARAIESGLQIK-IVQFQLPCEEAGLPEGC 82 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~ 82 (492)
++||||++++ ++.....=+.+|.++|.++ |+++.++.+....+......+. .++. .+.+. +-..
T Consensus 23 ~~m~ki~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~-----~~i~~~~~l~-------~~~~- 88 (396)
T 3dzc_A 23 NAMKKVLIVF-GTRPEAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLEL-----FSITPDFDLN-------IMEP- 88 (396)
T ss_dssp -CCEEEEEEE-CSHHHHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHH-----TTCCCSEECC-------CCCT-
T ss_pred CCCCeEEEEE-eccHhHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHh-----cCCCCceeee-------cCCC-
Confidence 5578998887 5555566678899999998 7888766554322222221111 1221 01111 1000
Q ss_pred CccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEE--cCCC-ccHHHHHHHcCCCeEEEecchHHHHHHHhhh
Q 011142 83 ENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIIS--DMCL-PYTAHIAGKFNIPRITFHGTCCFCLVCYNNL 159 (492)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~--D~~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 159 (492)
..... .........+.+++++ .+||+|++ |..+ +++..+|..+|||++.+....
T Consensus 89 -------~~~~~----~~~~~~~~~l~~~l~~--~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~---------- 145 (396)
T 3dzc_A 89 -------GQTLN----GVTSKILLGMQQVLSS--EQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGL---------- 145 (396)
T ss_dssp -------TCCHH----HHHHHHHHHHHHHHHH--HCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCC----------
T ss_pred -------CCCHH----HHHHHHHHHHHHHHHh--cCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc----------
Confidence 00111 1223455667888888 89999997 3233 245678999999987531110
Q ss_pred ccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHh-hcC-
Q 011142 160 FTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKK-IRH- 237 (492)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~- 237 (492)
. .+. .+...+ .+..+.+.. +.++.+++.+-.. ...+.. -.+
T Consensus 146 --------------r----s~~-----~~~~~~-------~~~~r~~~~--~~a~~~~~~se~~-----~~~l~~~G~~~ 188 (396)
T 3dzc_A 146 --------------R----TGN-----IYSPWP-------EEGNRKLTA--ALTQYHFAPTDTS-----RANLLQENYNA 188 (396)
T ss_dssp --------------C----CSC-----TTSSTT-------HHHHHHHHH--HTCSEEEESSHHH-----HHHHHHTTCCG
T ss_pred --------------c----ccc-----cccCCc-------HHHHHHHHH--HhcCEEECCCHHH-----HHHHHHcCCCc
Confidence 0 000 000000 111111111 2245556655222 222222 122
Q ss_pred CcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccC-CCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCC
Q 011142 238 DKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDS-KAPKSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRP 311 (492)
Q Consensus 238 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~ 311 (492)
.+++.+|....+........... .......+.+.+.- .+++++|+++.+-...... .+..+++|+..+ +.+
T Consensus 189 ~ki~vvGn~~~d~~~~~~~~~~~--~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~-~~~~ll~A~~~l~~~~~~~~ 265 (396)
T 3dzc_A 189 ENIFVTGNTVIDALLAVREKIHT--DMDLQATLESQFPMLDASKKLILVTGHRRESFGG-GFERICQALITTAEQHPECQ 265 (396)
T ss_dssp GGEEECCCHHHHHHHHHHHHHHH--CHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTT-HHHHHHHHHHHHHHHCTTEE
T ss_pred CcEEEECCcHHHHHHHhhhhccc--chhhHHHHHHHhCccCCCCCEEEEEECCcccchh-HHHHHHHHHHHHHHhCCCce
Confidence 46888883221110000000000 00000223333321 1245677776532222222 356677776643 456
Q ss_pred eEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCc---hhhcccCCCccccccccCchhhHHHHhcCCCeeccCC
Q 011142 312 FIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAP---QVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPL 387 (492)
Q Consensus 312 vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~p---q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~ 387 (492)
+|+..+.+.. +-+.+.+.. ...|+++.++++ ...+++.+++ +|+-.| |.+.||.++|+|+|+..-
T Consensus 266 ~v~~~g~~~~--------~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~ 334 (396)
T 3dzc_A 266 ILYPVHLNPN--------VREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHI--ILTDSG-GIQEEAPSLGKPVLVMRE 334 (396)
T ss_dssp EEEECCBCHH--------HHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSE--EEESCS-GGGTTGGGGTCCEEECCS
T ss_pred EEEEeCCChH--------HHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCE--EEECCc-cHHHHHHHcCCCEEEccC
Confidence 6665543211 111111111 245888877775 3568999999 999987 656799999999999754
Q ss_pred ccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 388 FGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 388 ~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
..+++ .++ +.|.++.+ . .++++|.+++.++++|+
T Consensus 335 ~~~~~----e~v-~~G~~~lv--~--------------~d~~~l~~ai~~ll~d~ 368 (396)
T 3dzc_A 335 TTERP----EAV-AAGTVKLV--G--------------TNQQQICDALSLLLTDP 368 (396)
T ss_dssp SCSCH----HHH-HHTSEEEC--T--------------TCHHHHHHHHHHHHHCH
T ss_pred CCcch----HHH-HcCceEEc--C--------------CCHHHHHHHHHHHHcCH
Confidence 44432 243 67877443 2 35899999999999886
No 32
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.28 E-value=1.3e-10 Score=115.77 Aligned_cols=321 Identities=10% Similarity=0.059 Sum_probs=163.7
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEE-EEecCCccccCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKI-VQFQLPCEEAGLPEG 81 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~ 81 (492)
|+||||+++. ++.....=+.+|.++|.++ |+++.++.+....+......+. .++.. +.+ ++-..
T Consensus 25 m~~~kI~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~-----~~i~~~~~l-------~v~~~ 91 (403)
T 3ot5_A 25 MAKIKVMSIF-GTRPEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEI-----FDIKPDIDL-------DIMKK 91 (403)
T ss_dssp -CCEEEEEEE-CSHHHHHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHH-----TTCCCSEEC-------CCCC-
T ss_pred cccceEEEEE-ecChhHHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHh-----cCCCCCccc-------ccCCC
Confidence 5567998887 4444555568899999998 6887766554221222221111 12210 111 11000
Q ss_pred CCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcC--CC-ccHHHHHHHcCCCeEEEecchHHHHHHHhh
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDM--CL-PYTAHIAGKFNIPRITFHGTCCFCLVCYNN 158 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 158 (492)
.. .. ..........+.+++++ .+||+|++=. .. .++..+|..+|||++.+....
T Consensus 92 ~~--------~~----~~~~~~~~~~l~~~l~~--~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~agl--------- 148 (403)
T 3ot5_A 92 GQ--------TL----AEITSRVMNGINEVIAA--ENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGL--------- 148 (403)
T ss_dssp CC--------CH----HHHHHHHHHHHHHHHHH--HCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCC---------
T ss_pred CC--------CH----HHHHHHHHHHHHHHHHH--cCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc---------
Confidence 00 11 12233455667788888 8999999632 22 245678999999987532110
Q ss_pred hccccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHh-hc-
Q 011142 159 LFTSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKK-IR- 236 (492)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~- 236 (492)
..+. .....+ .+..+..... .++.++..+-. ....+.. -.
T Consensus 149 -------------------rs~~-----~~~~~p-------~~~~r~~~~~--~a~~~~~~se~-----~~~~l~~~Gi~ 190 (403)
T 3ot5_A 149 -------------------RTWN-----KYSPFP-------EEMNRQLTGV--MADIHFSPTKQ-----AKENLLAEGKD 190 (403)
T ss_dssp -------------------CCSC-----TTSSTT-------HHHHHHHHHH--HCSEEEESSHH-----HHHHHHHTTCC
T ss_pred -------------------cccc-----cccCCc-------HHHHHHHHHH--hcCEEECCCHH-----HHHHHHHcCCC
Confidence 0000 000000 1111111111 13445555422 2222222 12
Q ss_pred CCcEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh-----CCCC
Q 011142 237 HDKVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEA-----SNRP 311 (492)
Q Consensus 237 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~-----~~~~ 311 (492)
+.+++.+|....+.... .... ....+..+.+ .++++++++.|...... +.+..+++++.. .+.+
T Consensus 191 ~~~i~vvGn~~~D~~~~-----~~~~--~~~~~~~~~l---~~~~~vlv~~~r~~~~~-~~l~~ll~a~~~l~~~~~~~~ 259 (403)
T 3ot5_A 191 PATIFVTGNTAIDALKT-----TVQK--DYHHPILENL---GDNRLILMTAHRRENLG-EPMQGMFEAVREIVESREDTE 259 (403)
T ss_dssp GGGEEECCCHHHHHHHH-----HSCT--TCCCHHHHSC---TTCEEEEECCCCHHHHT-THHHHHHHHHHHHHHHCTTEE
T ss_pred cccEEEeCCchHHHHHh-----hhhh--hcchHHHHhc---cCCCEEEEEeCcccccC-cHHHHHHHHHHHHHHhCCCce
Confidence 24688888432111000 0000 0011122222 34567777655422211 124556666653 3456
Q ss_pred eEEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch---hhcccCCCccccccccCchhhHHHHhcCCCeeccCC
Q 011142 312 FIWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ---VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPL 387 (492)
Q Consensus 312 vv~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq---~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~ 387 (492)
+|+..+.+.. +-+.+.+.. ...|+++.+++++ ..+++.+++ +|+..|.. ..||.++|+|+|++|-
T Consensus 260 ~v~~~~~~~~--------~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~--vv~~SGg~-~~EA~a~g~PvV~~~~ 328 (403)
T 3ot5_A 260 LVYPMHLNPA--------VREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYL--VFTDSGGV-QEEAPGMGVPVLVLRD 328 (403)
T ss_dssp EEEECCSCHH--------HHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEE--EEECCHHH-HHHGGGTTCCEEECCS
T ss_pred EEEecCCCHH--------HHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCE--EEECCccH-HHHHHHhCCCEEEecC
Confidence 6666443211 101111111 2368988888863 568889998 99887532 3699999999999975
Q ss_pred ccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 388 FGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 388 ~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
..++.. ++ +.|.|+.+. .++++|.+++.++++|+
T Consensus 329 ~~~~~e----~v-~~g~~~lv~----------------~d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 329 TTERPE----GI-EAGTLKLIG----------------TNKENLIKEALDLLDNK 362 (403)
T ss_dssp SCSCHH----HH-HHTSEEECC----------------SCHHHHHHHHHHHHHCH
T ss_pred CCcchh----he-eCCcEEEcC----------------CCHHHHHHHHHHHHcCH
Confidence 555543 33 678776542 36899999999999886
No 33
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.27 E-value=4.1e-10 Score=110.92 Aligned_cols=147 Identities=11% Similarity=0.181 Sum_probs=97.6
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCC----Ce-EEEEeCCCcchhhhhccchhhHHHHh-cCCCeeeecCCch-hhc
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEASNR----PF-IWVIREGETSKELKKWVVEDGFEERI-KGRGLVIWGWAPQ-VLI 354 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~----~v-v~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~~l 354 (492)
.+++..|+... ...+..+++++..+.. .+ ++.+|.+. ...+. .+..+. ...|+.+.++..+ ..+
T Consensus 197 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~-~~~~~------~~~~~~~~~~~v~~~g~~~~~~~~ 267 (374)
T 2iw1_A 197 NLLLQVGSDFG--RKGVDRSIEALASLPESLRHNTLLFVVGQDK-PRKFE------ALAEKLGVRSNVHFFSGRNDVSEL 267 (374)
T ss_dssp EEEEEECSCTT--TTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-CHHHH------HHHHHHTCGGGEEEESCCSCHHHH
T ss_pred eEEEEeccchh--hcCHHHHHHHHHHhHhccCCceEEEEEcCCC-HHHHH------HHHHHcCCCCcEEECCCcccHHHH
Confidence 56666777543 3456677888876532 22 33344332 22211 111122 2468888888665 558
Q ss_pred ccCCCcccccc----ccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHH
Q 011142 355 LSHPSIGGFLT----HCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDD 430 (492)
Q Consensus 355 L~~~~~~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 430 (492)
++.+++ +|. -|..+++.||+++|+|+|+.+. ..+...+ ++.+.|..++.. -+.++
T Consensus 268 ~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~--------------~~~~~ 326 (374)
T 2iw1_A 268 MAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYI-ADANCGTVIAEP--------------FSQEQ 326 (374)
T ss_dssp HHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHH-HHHTCEEEECSS--------------CCHHH
T ss_pred HHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhh-ccCCceEEeCCC--------------CCHHH
Confidence 888998 775 4567899999999999999765 3456677 578889888632 57899
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHH
Q 011142 431 VRNAVEKLMDEGKEGEERRNRAVKLGQM 458 (492)
Q Consensus 431 l~~ai~~ll~~~~~~~~~~~~a~~l~~~ 458 (492)
+.++|.++++|++..+.+.+++++..+.
T Consensus 327 l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 354 (374)
T 2iw1_A 327 LNEVLRKALTQSPLRMAWAENARHYADT 354 (374)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 9999999999886556666666665543
No 34
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.22 E-value=1.3e-09 Score=107.43 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=81.9
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCeEEEEeCCCcchhhhhccchhhHHHHhc-CCCeeeecCCch-
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEAS-----NRPFIWVIREGETSKELKKWVVEDGFEERIK-GRGLVIWGWAPQ- 351 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~-----~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq- 351 (492)
++++++++.|...... ..+..+++|+..+ +.++++ +.+... . +-+...+... ..|+.+.+++++
T Consensus 204 ~~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~--~~g~~~-~-----~~~~~~~~~~~~~~v~~~g~~~~~ 274 (375)
T 3beo_A 204 NNRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVY--PVHMNP-V-----VRETANDILGDYGRIHLIEPLDVI 274 (375)
T ss_dssp TSEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEE--ECCSCH-H-----HHHHHHHHHTTCTTEEEECCCCHH
T ss_pred CCCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEE--eCCCCH-H-----HHHHHHHHhhccCCEEEeCCCCHH
Confidence 4556777777654321 3466677777642 344443 333211 1 1111111112 268988777764
Q ss_pred --hhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 352 --VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 352 --~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
..+++.+++ ||+..| +.+.||+++|+|+|+....+.. ..+. +.|.|+.++ .+.+
T Consensus 275 ~~~~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~----~e~v-~~g~g~~v~----------------~d~~ 330 (375)
T 3beo_A 275 DFHNVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER----PEGI-EAGTLKLAG----------------TDEE 330 (375)
T ss_dssp HHHHHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC----HHHH-HTTSEEECC----------------SCHH
T ss_pred HHHHHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC----ceee-cCCceEEcC----------------CCHH
Confidence 468899999 998864 4588999999999998543332 3343 667776552 2578
Q ss_pred HHHHHHHHHhccC
Q 011142 430 DVRNAVEKLMDEG 442 (492)
Q Consensus 430 ~l~~ai~~ll~~~ 442 (492)
+|+++|.++++|+
T Consensus 331 ~la~~i~~ll~~~ 343 (375)
T 3beo_A 331 TIFSLADELLSDK 343 (375)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999999886
No 35
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.20 E-value=5.8e-08 Score=97.46 Aligned_cols=112 Identities=11% Similarity=-0.002 Sum_probs=76.3
Q ss_pred CCeeeecCCchh---hcccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCC
Q 011142 341 RGLVIWGWAPQV---LILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESP 413 (492)
Q Consensus 341 ~nv~~~~~~pq~---~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 413 (492)
.++.+.+|+++. .++..+++ +|.- |-.+++.||+++|+|+|+... ......+ ..|.|..++.
T Consensus 311 ~~~~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~Pvi~s~~----~~~~e~~--~~~~g~~~~~--- 379 (439)
T 3fro_A 311 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDII--TNETGILVKA--- 379 (439)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECBSCCSSCHHHHHHHHTTCEEEEESS----THHHHHC--CTTTCEEECT---
T ss_pred CEEEEcCCCCHHHHHHHHHHCCE--EEeCCCCCCccHHHHHHHHCCCCeEEcCC----CCcceeE--EcCceEEeCC---
Confidence 456677889874 47889998 6632 334799999999999999753 3344434 3467877765
Q ss_pred cccccccccccccCHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 011142 414 MIWGEEQKIGVLMKRDDVRNAVEKLMD-EGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (492)
-+.++++++|.++++ |++..+.+.+++++..+. -+....++++++-+.+.
T Consensus 380 ------------~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~--------~s~~~~~~~~~~~~~~~ 430 (439)
T 3fro_A 380 ------------GDPGELANAILKALELSRSDLSKFRENCKKRAMS--------FSWEKSAERYVKAYTGS 430 (439)
T ss_dssp ------------TCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHT--------SCHHHHHHHHHHHHHTC
T ss_pred ------------CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh--------CcHHHHHHHHHHHHHHH
Confidence 468999999999998 876666666666655422 34344445555554443
No 36
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.17 E-value=1.2e-08 Score=101.37 Aligned_cols=333 Identities=11% Similarity=0.079 Sum_probs=172.5
Q ss_pred ccEEEEecCCC-cCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 7 QLHFVLFPFLA-QGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 7 ~~~il~~~~~~-~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
++++....+|. .|.-.-...|++.|+++||+|++++....... .. ...++.+..++.... +. .
T Consensus 15 ~~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~-~~-------~~~~i~~~~~~~~~~----~~----~ 78 (394)
T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRL-NK-------VYPNIYFHEVTVNQY----SV----F 78 (394)
T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-----C-------CCTTEEEECCCCC------------C
T ss_pred eeeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcc-cc-------cCCceEEEecccccc----cc----c
Confidence 45677777775 66778889999999999999999997532110 00 123466655432110 00 0
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCcc--HHHHHH-Hc--CCCeEEEecchHHHHHHHhhhc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPY--TAHIAG-KF--NIPRITFHGTCCFCLVCYNNLF 160 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~--~~~~A~-~l--giP~v~~~~~~~~~~~~~~~~~ 160 (492)
.. .... ......+.+++++ .+||+|++...... ...++. .+ ++|+|..........
T Consensus 79 ---~~-~~~~------~~~~~~l~~~l~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~------- 139 (394)
T 2jjm_A 79 ---QY-PPYD------LALASKMAEVAQR--ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITV------- 139 (394)
T ss_dssp ---CS-CCHH------HHHHHHHHHHHHH--HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHT-------
T ss_pred ---cc-cccc------HHHHHHHHHHHHH--cCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccc-------
Confidence 00 0000 0123445667777 79999998754432 223333 34 599887544422110
Q ss_pred cccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHhhcC--C
Q 011142 161 TSKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRH--D 238 (492)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~ 238 (492)
.+... .+...... ..+.++.++..|-... ..+...++ .
T Consensus 140 -----------------~~~~~---------------~~~~~~~~---~~~~ad~ii~~s~~~~-----~~~~~~~~~~~ 179 (394)
T 2jjm_A 140 -----------------LGSDP---------------SLNNLIRF---GIEQSDVVTAVSHSLI-----NETHELVKPNK 179 (394)
T ss_dssp -----------------TTTCT---------------TTHHHHHH---HHHHSSEEEESCHHHH-----HHHHHHTCCSS
T ss_pred -----------------cCCCH---------------HHHHHHHH---HHhhCCEEEECCHHHH-----HHHHHhhCCcc
Confidence 00000 00111111 2234677777663332 23333332 4
Q ss_pred cEEEeccCCCCCcccchhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC----CCCeEE
Q 011142 239 KVWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEAS----NRPFIW 314 (492)
Q Consensus 239 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~----~~~vv~ 314 (492)
++..+..-.....-. ......+.+.+.-.+++ .+++..|.... ...+..++++++.+ +.++ +
T Consensus 180 ~~~vi~ngv~~~~~~----------~~~~~~~~~~~~~~~~~-~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~l-~ 245 (394)
T 2jjm_A 180 DIQTVYNFIDERVYF----------KRDMTQLKKEYGISESE-KILIHISNFRK--VKRVQDVVQAFAKIVTEVDAKL-L 245 (394)
T ss_dssp CEEECCCCCCTTTCC----------CCCCHHHHHHTTCC----CEEEEECCCCG--GGTHHHHHHHHHHHHHSSCCEE-E
T ss_pred cEEEecCCccHHhcC----------CcchHHHHHHcCCCCCC-eEEEEeecccc--ccCHHHHHHHHHHHHhhCCCEE-E
Confidence 666665432211100 00112222222211122 35556677653 33455566665542 3443 3
Q ss_pred EEeCCCcchhhhhccchhhHHHHhc-CCCeeeecCCch-hhcccCCCccccc----cccCchhhHHHHhcCCCeeccCCc
Q 011142 315 VIREGETSKELKKWVVEDGFEERIK-GRGLVIWGWAPQ-VLILSHPSIGGFL----THCGWNSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq-~~lL~~~~~~~~I----tHgG~~s~~Eal~~GvP~v~~P~~ 388 (492)
.+|.......+.. ...+.. ..|+.+.++..+ ..+++.+++ +| .-|..+++.||+++|+|+|+.+..
T Consensus 246 i~G~g~~~~~l~~------~~~~~~l~~~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~PvI~~~~~ 317 (394)
T 2jjm_A 246 LVGDGPEFCTILQ------LVKNLHIEDRVLFLGKQDNVAELLAMSDL--MLLLSEKESFGLVLLEAMACGVPCIGTRVG 317 (394)
T ss_dssp EECCCTTHHHHHH------HHHTTTCGGGBCCCBSCSCTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTCCEEEECCT
T ss_pred EECCchHHHHHHH------HHHHcCCCCeEEEeCchhhHHHHHHhCCE--EEeccccCCCchHHHHHHhcCCCEEEecCC
Confidence 3443332221111 111111 357888777655 568999998 77 556678999999999999998753
Q ss_pred cccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHH
Q 011142 389 GDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLG 456 (492)
Q Consensus 389 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~ 456 (492)
+ ....+ ++.+.|+.++. -+.++++++|.++++|++..+.+.+++++..
T Consensus 318 ~----~~e~v-~~~~~g~~~~~---------------~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 365 (394)
T 2jjm_A 318 G----IPEVI-QHGDTGYLCEV---------------GDTTGVADQAIQLLKDEELHRNMGERARESV 365 (394)
T ss_dssp T----STTTC-CBTTTEEEECT---------------TCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred C----hHHHh-hcCCceEEeCC---------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 2 23333 34456776654 4689999999999998754445555554443
No 37
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.12 E-value=1.5e-09 Score=105.74 Aligned_cols=124 Identities=13% Similarity=0.077 Sum_probs=81.6
Q ss_pred EEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchh---hcccCCCc
Q 011142 284 YACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQV---LILSHPSI 360 (492)
Q Consensus 284 yvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~lL~~~~~ 360 (492)
++..|+.. ....+..++++++.++.++++. |.....+.++ .+.++.. .|+.+.+|+++. .++..+++
T Consensus 165 i~~vG~~~--~~Kg~~~li~a~~~~~~~l~i~-G~g~~~~~l~------~~~~~~~-~~v~~~g~~~~~~l~~~~~~adv 234 (342)
T 2iuy_A 165 LLFMGRVS--PHKGALEAAAFAHACGRRLVLA-GPAWEPEYFD------EITRRYG-STVEPIGEVGGERRLDLLASAHA 234 (342)
T ss_dssp EEEESCCC--GGGTHHHHHHHHHHHTCCEEEE-SCCCCHHHHH------HHHHHHT-TTEEECCCCCHHHHHHHHHHCSE
T ss_pred EEEEeccc--cccCHHHHHHHHHhcCcEEEEE-eCcccHHHHH------HHHHHhC-CCEEEeccCCHHHHHHHHHhCCE
Confidence 34457655 3455777888888777776665 4333222211 1222222 799999999975 68889998
Q ss_pred ccccc--c-----------cC-chhhHHHHhcCCCeeccCCccccchhHHHHHHH--hccceeecccCCccccccccccc
Q 011142 361 GGFLT--H-----------CG-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQI--LKIGVKVGVESPMIWGEEQKIGV 424 (492)
Q Consensus 361 ~~~It--H-----------gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~--~G~G~~l~~~~~~~~~~~~~~~~ 424 (492)
+|. . -| .+++.||+++|+|+|+... ..+...+ ++ -+.|+.+ .
T Consensus 235 --~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~-~~~~~~~g~~~--~------------- 292 (342)
T 2iuy_A 235 --VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIV-PSVGEVVGYGT--D------------- 292 (342)
T ss_dssp --EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHG-GGGEEECCSSS--C-------------
T ss_pred --EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHh-cccCCCceEEc--C-------------
Confidence 662 2 33 4689999999999999875 3355555 34 3455543 1
Q ss_pred ccCHHHHHHHHHHHhc
Q 011142 425 LMKRDDVRNAVEKLMD 440 (492)
Q Consensus 425 ~~~~~~l~~ai~~ll~ 440 (492)
. +.++++++|.++++
T Consensus 293 ~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 293 F-APDEARRTLAGLPA 307 (342)
T ss_dssp C-CHHHHHHHHHTSCC
T ss_pred C-CHHHHHHHHHHHHH
Confidence 3 68999999999986
No 38
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.12 E-value=5e-09 Score=104.89 Aligned_cols=92 Identities=11% Similarity=0.003 Sum_probs=64.5
Q ss_pred CCCeeeecCCc---h---hhcccCCCcccccccc----CchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeec
Q 011142 340 GRGLVIWGWAP---Q---VLILSHPSIGGFLTHC----GWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVG 409 (492)
Q Consensus 340 ~~nv~~~~~~p---q---~~lL~~~~~~~~ItHg----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 409 (492)
..++.+.+|++ + ..+++.+++ +|.-. ..+++.||+++|+|+|+.+. ..+...+ ++-+.|+.++
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i-~~~~~g~l~~ 364 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQI-VDGETGFLVR 364 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHC-CBTTTEEEES
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhhe-ecCCCeEEEC
Confidence 46899988776 2 447888888 77543 45689999999999999764 3344445 3445666553
Q ss_pred ccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHH
Q 011142 410 VESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKL 455 (492)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l 455 (492)
+.++++++|.++++|++..+.+.+++++.
T Consensus 365 -----------------d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 393 (416)
T 2x6q_A 365 -----------------DANEAVEVVLYLLKHPEVSKEMGAKAKER 393 (416)
T ss_dssp -----------------SHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 47889999999999875444455555443
No 39
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.02 E-value=1e-08 Score=101.34 Aligned_cols=325 Identities=17% Similarity=0.121 Sum_probs=169.2
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh-hhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA-RFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
+-|+|++++. ++.-...=+.+|.++|.++ +++.++.+.-..+ .+..... .+.++ +.|.. .+..+
T Consensus 7 ~~~~~~~~v~-GtRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~----~~~~i-----~~~~~--~l~~~-- 71 (385)
T 4hwg_A 7 HHMLKVMTIV-GTRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFF----DDMGI-----RKPDY--FLEVA-- 71 (385)
T ss_dssp -CCCEEEEEE-CSHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHH----C-CCC-----CCCSE--ECCCC--
T ss_pred hhhhheeEEE-EcCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHH----hhCCC-----CCCce--ecCCC--
Confidence 3478888776 5666666777778888877 8877776653222 2222110 11111 11100 01111
Q ss_pred ccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEE--cCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhcc
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIIS--DMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNLFT 161 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~--D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (492)
... ...........+.+++++ .+||+||+ |..+.++..+|..+|||++.+....
T Consensus 72 ------~~~----~~~~~~~~~~~l~~~l~~--~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl------------ 127 (385)
T 4hwg_A 72 ------ADN----TAKSIGLVIEKVDEVLEK--EKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN------------ 127 (385)
T ss_dssp ------CCC----SHHHHHHHHHHHHHHHHH--HCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC------------
T ss_pred ------CCC----HHHHHHHHHHHHHHHHHh--cCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC------------
Confidence 001 122333456667788888 89999986 3334445789999999976532110
Q ss_pred ccccccCcCCCcccccCCCCCCccccccccCccccchhHHHHHHhhhccCCccEEEEcChhhhcHHHHHHHHh-hc-CCc
Q 011142 162 SKVFESVSSESEYLVVPCLPDKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKK-IR-HDK 239 (492)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~-~~~ 239 (492)
.++. ..++ .+..+..... -++.++..+-. ....+.. -. +.+
T Consensus 128 ----------------rs~~-------~~~p-------ee~nR~~~~~--~a~~~~~~te~-----~~~~l~~~G~~~~~ 170 (385)
T 4hwg_A 128 ----------------RCFD-------QRVP-------EEINRKIIDH--ISDVNITLTEH-----ARRYLIAEGLPAEL 170 (385)
T ss_dssp ----------------CCSC-------TTST-------HHHHHHHHHH--HCSEEEESSHH-----HHHHHHHTTCCGGG
T ss_pred ----------------cccc-------ccCc-------HHHHHHHHHh--hhceeecCCHH-----HHHHHHHcCCCcCc
Confidence 0000 0001 1111111111 13444554422 1122222 22 246
Q ss_pred EEEeccCCCCCcccc-hhhhcCCCCCcchhhhcccccCCCCCeEEEEeeCCCcCCC-HHhHHHHHHHHHhC----CCCeE
Q 011142 240 VWCIGPVSLSNKEYS-DKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLI-PSQMRELGLGLEAS----NRPFI 313 (492)
Q Consensus 240 ~~~vGp~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~-~~~~~~~~~a~~~~----~~~vv 313 (492)
++.+|-...+..... ... ...++.+.++-. +++.|+++.|...+.. .+.+..+++|+.++ +.++|
T Consensus 171 I~vtGnp~~D~~~~~~~~~--------~~~~~~~~lgl~-~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv 241 (385)
T 4hwg_A 171 TFKSGSHMPEVLDRFMPKI--------LKSDILDKLSLT-PKQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLII 241 (385)
T ss_dssp EEECCCSHHHHHHHHHHHH--------HHCCHHHHTTCC-TTSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEE
T ss_pred EEEECCchHHHHHHhhhhc--------chhHHHHHcCCC-cCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEE
Confidence 888883221110000 000 012223333322 3568888888765433 34566777777643 56777
Q ss_pred EEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCc---hhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccc
Q 011142 314 WVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAP---QVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGD 390 (492)
Q Consensus 314 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p---q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~D 390 (492)
+..+.. ....+.+ + .++ .....|+++.+.++ ...+++++++ +||-.|. .+.||.+.|+|+|.++-..+
T Consensus 242 ~p~~p~-~~~~l~~--~-~~~--~~~~~~v~l~~~lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~~~~te 312 (385)
T 4hwg_A 242 FSTHPR-TKKRLED--L-EGF--KELGDKIRFLPAFSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNIREAHE 312 (385)
T ss_dssp EEECHH-HHHHHHT--S-GGG--GGTGGGEEECCCCCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEECSSSCS
T ss_pred EECChH-HHHHHHH--H-HHH--hcCCCCEEEEcCCCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEcCCCcc
Confidence 765321 1111111 0 000 00135787766554 3568999999 9998876 46899999999999986544
Q ss_pred cchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChh
Q 011142 391 QFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKE 444 (492)
Q Consensus 391 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~ 444 (492)
.+. .+ +.|.++.+ . .++++|.+++.++++|+..
T Consensus 313 r~e----~v-~~G~~~lv--~--------------~d~~~i~~ai~~ll~d~~~ 345 (385)
T 4hwg_A 313 RPE----GM-DAGTLIMS--G--------------FKAERVLQAVKTITEEHDN 345 (385)
T ss_dssp CTH----HH-HHTCCEEC--C--------------SSHHHHHHHHHHHHTTCBT
T ss_pred chh----hh-hcCceEEc--C--------------CCHHHHHHHHHHHHhChHH
Confidence 222 23 67876544 2 4689999999999998743
No 40
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=3.1e-05 Score=80.48 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCeeeecCCch---hhcccCCCccccc---cccCchhhHHHHhcCCCeeccCCcccc-chhHHHHHHHhccceeecccCC
Q 011142 341 RGLVIWGWAPQ---VLILSHPSIGGFL---THCGWNSTIEGVSAGLPLLTWPLFGDQ-FMNEKLVVQILKIGVKVGVESP 413 (492)
Q Consensus 341 ~nv~~~~~~pq---~~lL~~~~~~~~I---tHgG~~s~~Eal~~GvP~v~~P~~~DQ-~~na~rv~e~~G~G~~l~~~~~ 413 (492)
.+|++.+++|+ ..++..+++ || ..|+.+++.||+++|+|+|++|...=. ...+..+ +..|+...+ .
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l-~~~g~~e~v--~-- 506 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLN-HHLGLDEMN--V-- 506 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHH-HHHTCGGGB--C--
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHH-HHCCChhhh--c--
Confidence 68999999984 457888888 76 236678999999999999998743211 1223445 466666444 1
Q ss_pred cccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHH
Q 011142 414 MIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVK 454 (492)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~ 454 (492)
-+.+++.+++.++++|++..+.+++++++
T Consensus 507 ------------~~~~~la~~i~~l~~~~~~~~~~~~~~~~ 535 (568)
T 2vsy_A 507 ------------ADDAAFVAKAVALASDPAALTALHARVDV 535 (568)
T ss_dssp ------------SSHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 26889999999999987444444444433
No 41
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.64 E-value=3.4e-06 Score=86.02 Aligned_cols=130 Identities=11% Similarity=0.027 Sum_probs=77.6
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhC---CCCeEEEEeCCCcchhhhhccchhhHHHHh--cCCCee-eecCCch--hh
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEAS---NRPFIWVIREGETSKELKKWVVEDGFEERI--KGRGLV-IWGWAPQ--VL 353 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~---~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~-~~~~~pq--~~ 353 (492)
.+++..|... ....+..+++|+..+ +.++++.-.+... +-+.+.+.. ...++. +.++..+ ..
T Consensus 293 ~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~--------~~~~l~~~~~~~~~~v~~~~g~~~~~~~~ 362 (485)
T 2qzs_A 293 PLFAVVSRLT--SQKGLDLVLEALPGLLEQGGQLALLGAGDPV--------LQEGFLAAAAEYPGQVGVQIGYHEAFSHR 362 (485)
T ss_dssp CEEEEEEEES--GGGCHHHHHHHHHHHHHTTCEEEEEEEECHH--------HHHHHHHHHHHSTTTEEEEESCCHHHHHH
T ss_pred eEEEEeccCc--cccCHHHHHHHHHHHhhCCcEEEEEeCCchH--------HHHHHHHHHHhCCCcEEEeCCCCHHHHHH
Confidence 3445556654 234455666666543 5665555433211 111121111 135775 6777433 35
Q ss_pred cccCCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHh---------ccceeecccCCccccccc
Q 011142 354 ILSHPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQIL---------KIGVKVGVESPMIWGEEQ 420 (492)
Q Consensus 354 lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~---------G~G~~l~~~~~~~~~~~~ 420 (492)
+++.+++ +|.- |..+++.||+++|+|+|+... ..+...+ ++- +.|..++.
T Consensus 363 ~~~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v-~~~~~~~~~~~~~~G~l~~~---------- 425 (485)
T 2qzs_A 363 IMGGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTV-SDCSLENLADGVASGFVFED---------- 425 (485)
T ss_dssp HHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHC-CBCCHHHHHTTCCCBEEECS----------
T ss_pred HHHhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCC----CCcccee-ccCccccccccccceEEECC----------
Confidence 7889998 6632 334689999999999999854 2344444 233 56776655
Q ss_pred ccccccCHHHHHHHHHHHh---ccCh
Q 011142 421 KIGVLMKRDDVRNAVEKLM---DEGK 443 (492)
Q Consensus 421 ~~~~~~~~~~l~~ai~~ll---~~~~ 443 (492)
-+.++++++|.+++ +|++
T Consensus 426 -----~d~~~la~~i~~ll~~~~~~~ 446 (485)
T 2qzs_A 426 -----SNAWSLLRAIRRAFVLWSRPS 446 (485)
T ss_dssp -----SSHHHHHHHHHHHHHHHTSHH
T ss_pred -----CCHHHHHHHHHHHHHHcCCHH
Confidence 46899999999999 5663
No 42
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.62 E-value=2.3e-06 Score=91.76 Aligned_cols=146 Identities=10% Similarity=0.057 Sum_probs=84.3
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCC-----CCeEEEEeCCCc-----chhhhhccchhhHH---HHh-cCCCeeeec
Q 011142 282 VVYACLGSLCNLIPSQMRELGLGLEASN-----RPFIWVIREGET-----SKELKKWVVEDGFE---ERI-KGRGLVIWG 347 (492)
Q Consensus 282 ~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~-----~~vv~~~~~~~~-----~~~~~~~~lp~~~~---~~~-~~~nv~~~~ 347 (492)
.+++..|... ..+.+..+++|+..+. .++++. |+... .+... .-+.+. ++. ...+|.+.+
T Consensus 573 ~vIl~vGRl~--~~KGid~LIeA~~~L~~~~~~v~LvIv-G~g~~~~~~~~e~~~---~~~~L~~li~~lgL~~~V~flG 646 (816)
T 3s28_A 573 PILFTMARLD--RVKNLSGLVEWYGKNTRLRELANLVVV-GGDRRKESKDNEEKA---EMKKMYDLIEEYKLNGQFRWIS 646 (816)
T ss_dssp CEEEEECCCC--TTTTHHHHHHHHHHCHHHHHHCEEEEE-CCCTTSCCCCHHHHH---HHHHHHHHHHHTTCBBBEEEEC
T ss_pred eEEEEEccCc--ccCCHHHHHHHHHHHHhhCCCeEEEEE-eCCCcccccchhhHH---HHHHHHHHHHHcCCCCcEEEcc
Confidence 3556677765 3455777778877652 444444 33331 00000 001111 111 246788877
Q ss_pred CC----chhhccc----CCCccccccc----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcc
Q 011142 348 WA----PQVLILS----HPSIGGFLTH----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMI 415 (492)
Q Consensus 348 ~~----pq~~lL~----~~~~~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 415 (492)
+. |+.++.. .+++ ||.- |-..++.||+++|+|+|+. |-......+ ++-+.|+.++.
T Consensus 647 ~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV-~dg~~Gllv~p----- 714 (816)
T 3s28_A 647 SQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEII-VHGKSGFHIDP----- 714 (816)
T ss_dssp CCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHC-CBTTTBEEECT-----
T ss_pred CccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHH-ccCCcEEEeCC-----
Confidence 54 3344433 4566 6632 3346899999999999996 444455555 35567877765
Q ss_pred cccccccccccCHHHHHHHHHHHh----ccChhhHHHHHHHHHH
Q 011142 416 WGEEQKIGVLMKRDDVRNAVEKLM----DEGKEGEERRNRAVKL 455 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~ll----~~~~~~~~~~~~a~~l 455 (492)
-+.++++++|.+++ +|++..+.+.+++++.
T Consensus 715 ----------~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~ 748 (816)
T 3s28_A 715 ----------YHGDQAADTLADFFTKCKEDPSHWDEISKGGLQR 748 (816)
T ss_dssp ----------TSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 46888999987666 7875555555555443
No 43
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.62 E-value=7.5e-06 Score=81.45 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=81.9
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHh-----CCCCeEEEEeCCCcch-hhhhccchhhHHHHhc-CCC-------eeee
Q 011142 281 SVVYACLGSLCNLIPSQMRELGLGLEA-----SNRPFIWVIREGETSK-ELKKWVVEDGFEERIK-GRG-------LVIW 346 (492)
Q Consensus 281 ~~Vyvs~Gs~~~~~~~~~~~~~~a~~~-----~~~~vv~~~~~~~~~~-~~~~~~lp~~~~~~~~-~~n-------v~~~ 346 (492)
..+++..|... ....+..+++|+.. .+.++++.-.+..... .+.+. + ..+..+.. ..+ +.+.
T Consensus 184 ~~~il~vGr~~--~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~-~-~~~~~~~~l~~~v~~l~~vv~~~ 259 (413)
T 3oy2_A 184 DVLFLNMNRNT--ARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSI-A-LRELVASGVDNVFTHLNKIMINR 259 (413)
T ss_dssp SEEEECCSCSS--GGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHH-H-HHHHHHHTCSCHHHHHTTEEEEC
T ss_pred ceEEEEcCCCc--hhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHH-H-HHHHHHcCcccccccccceeecc
Confidence 35666777754 23445556666554 3567776655443210 00000 1 11111222 222 6677
Q ss_pred cCCch---hhcccCCCcccccc----ccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhcc---------------
Q 011142 347 GWAPQ---VLILSHPSIGGFLT----HCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKI--------------- 404 (492)
Q Consensus 347 ~~~pq---~~lL~~~~~~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~--------------- 404 (492)
+|+|+ ..+++.+++ +|. -|..+++.||+++|+|+|+.... .....+ ..|.
T Consensus 260 g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~~----g~~e~v--~~~~~~~i~~~~~~~~~~~ 331 (413)
T 3oy2_A 260 TVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAVG----GADDYF--SGDCVYKIKPSAWISVDDR 331 (413)
T ss_dssp SCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECCH----HHHHHS--CTTTSEEECCCEEEECTTT
T ss_pred CcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCCC----ChHHHH--ccCcccccccccccccccc
Confidence 89984 447888888 663 23346899999999999996532 333333 2222
Q ss_pred -ce--eecccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHH
Q 011142 405 -GV--KVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 405 -G~--~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
|+ .+.. -+.++++++| ++++|++..+.+.++++
T Consensus 332 ~G~~gl~~~---------------~d~~~la~~i-~l~~~~~~~~~~~~~a~ 367 (413)
T 3oy2_A 332 DGIGGIEGI---------------IDVDDLVEAF-TFFKDEKNRKEYGKRVQ 367 (413)
T ss_dssp CSSCCEEEE---------------CCHHHHHHHH-HHTTSHHHHHHHHHHHH
T ss_pred cCcceeeCC---------------CCHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 43 4433 4799999999 99998743333333333
No 44
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.61 E-value=1.9e-06 Score=87.82 Aligned_cols=130 Identities=9% Similarity=0.045 Sum_probs=77.9
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHh---CCCCeEEEEeCCCc-chhhhhccchhhHHHHhcCCCee-eecCCch--hhcc
Q 011142 283 VYACLGSLCNLIPSQMRELGLGLEA---SNRPFIWVIREGET-SKELKKWVVEDGFEERIKGRGLV-IWGWAPQ--VLIL 355 (492)
Q Consensus 283 Vyvs~Gs~~~~~~~~~~~~~~a~~~---~~~~vv~~~~~~~~-~~~~~~~~lp~~~~~~~~~~nv~-~~~~~pq--~~lL 355 (492)
+++..|.... ...+..+++|+.. .+.++++.-.+... .+.+. .+..+. +.++. +.++..+ ..++
T Consensus 293 ~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~------~~~~~~-~~~v~~~~g~~~~~~~~~~ 363 (485)
T 1rzu_A 293 LFCVISRLTW--QKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALL------AAASRH-HGRVGVAIGYNEPLSHLMQ 363 (485)
T ss_dssp EEEEESCBST--TTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHH------HHHHHT-TTTEEEEESCCHHHHHHHH
T ss_pred EEEEEccCcc--ccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHH------HHHHhC-CCcEEEecCCCHHHHHHHH
Confidence 5666787653 3345555555553 35555554332211 11111 111111 36786 6777433 2578
Q ss_pred cCCCcccccc----ccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHh---------ccceeecccCCccccccccc
Q 011142 356 SHPSIGGFLT----HCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQIL---------KIGVKVGVESPMIWGEEQKI 422 (492)
Q Consensus 356 ~~~~~~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~---------G~G~~l~~~~~~~~~~~~~~ 422 (492)
+.+++ +|. -|-.+++.||+++|+|+|+... ......+ ++- +.|..++.
T Consensus 364 ~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v-~~~~~~~~~~~~~~G~l~~~------------ 424 (485)
T 1rzu_A 364 AGCDA--IIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTV-IDANHAALASKAATGVQFSP------------ 424 (485)
T ss_dssp HHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHC-CBCCHHHHHTTCCCBEEESS------------
T ss_pred hcCCE--EEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhhee-cccccccccccCCcceEeCC------------
Confidence 89998 763 2335689999999999999764 2344444 233 56777654
Q ss_pred ccccCHHHHHHHHHHHh---ccCh
Q 011142 423 GVLMKRDDVRNAVEKLM---DEGK 443 (492)
Q Consensus 423 ~~~~~~~~l~~ai~~ll---~~~~ 443 (492)
-+.++++++|.+++ +|++
T Consensus 425 ---~d~~~la~~i~~ll~~~~~~~ 445 (485)
T 1rzu_A 425 ---VTLDGLKQAIRRTVRYYHDPK 445 (485)
T ss_dssp ---CSHHHHHHHHHHHHHHHTCHH
T ss_pred ---CCHHHHHHHHHHHHHHhCCHH
Confidence 46899999999999 6663
No 45
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.45 E-value=4.1e-05 Score=75.21 Aligned_cols=98 Identities=10% Similarity=0.109 Sum_probs=70.2
Q ss_pred CeeeecCCch-hhcccCCCccccccc-----cCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcc
Q 011142 342 GLVIWGWAPQ-VLILSHPSIGGFLTH-----CGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMI 415 (492)
Q Consensus 342 nv~~~~~~pq-~~lL~~~~~~~~ItH-----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 415 (492)
++.+.++..+ ..+++.+++ ++.- +|..++.||+++|+|+|+-|-..+.......+ .+.|.++..
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~-~~~G~l~~~------- 330 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFL-EKEGAGFEV------- 330 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHH-HHTTCEEEC-------
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHH-HHCCCEEEe-------
Confidence 4555555544 558888887 6542 24478999999999999877666666656555 255655433
Q ss_pred cccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Q 011142 416 WGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMAN 460 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~ 460 (492)
-+.++|+++|.++++| +..+.+.+++++..+.-.
T Consensus 331 ----------~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~~ 364 (374)
T 2xci_A 331 ----------KNETELVTKLTELLSV-KKEIKVEEKSREIKGCYL 364 (374)
T ss_dssp ----------CSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcc
Confidence 2578999999999998 777788888887766533
No 46
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.37 E-value=2.3e-06 Score=74.60 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=87.7
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhC-CCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCch---hhcccCC
Q 011142 283 VYACLGSLCNLIPSQMRELGLGLEAS-NRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQ---VLILSHP 358 (492)
Q Consensus 283 Vyvs~Gs~~~~~~~~~~~~~~a~~~~-~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq---~~lL~~~ 358 (492)
+++..|+.. ....+..+++++..+ +.++++. +.......+.. +...+ ......|+.+.+|+++ ..++..+
T Consensus 25 ~i~~~G~~~--~~Kg~~~li~a~~~l~~~~l~i~-G~~~~~~~l~~--~~~~~-~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 25 FWLSVNRIY--PEKRIELQLEVFKKLQDEKLYIV-GWFSKGDHAER--YARKI-MKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CEEEECCSS--GGGTHHHHHHHHHHCTTSCEEEE-BCCCTTSTHHH--HHHHH-HHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred EEEEEeccc--cccCHHHHHHHHHhCCCcEEEEE-ecCccHHHHHH--HHHhh-hcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 445567765 344577788888876 5566555 33332222211 11100 1112568999999997 5688899
Q ss_pred Ccccccc---ccCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHH
Q 011142 359 SIGGFLT---HCGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNA 434 (492)
Q Consensus 359 ~~~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 434 (492)
++ +|. +.|. .++.||+++|+|+|+... ..+...+ ++.+.|..+ . -+.++++++
T Consensus 99 di--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i-~~~~~g~~~-~---------------~d~~~l~~~ 155 (177)
T 2f9f_A 99 KG--LLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETV-INEKTGYLV-N---------------ADVNEIIDA 155 (177)
T ss_dssp SE--EEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHC-CBTTTEEEE-C---------------SCHHHHHHH
T ss_pred CE--EEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHh-cCCCccEEe-C---------------CCHHHHHHH
Confidence 98 665 3344 599999999999999753 4455555 355677777 3 578999999
Q ss_pred HHHHhccChh
Q 011142 435 VEKLMDEGKE 444 (492)
Q Consensus 435 i~~ll~~~~~ 444 (492)
|.++++|++.
T Consensus 156 i~~l~~~~~~ 165 (177)
T 2f9f_A 156 MKKVSKNPDK 165 (177)
T ss_dssp HHHHHHCTTT
T ss_pred HHHHHhCHHH
Confidence 9999988853
No 47
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.36 E-value=6.5e-05 Score=74.66 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=57.8
Q ss_pred CCCeeeecCCchh---hcccCCCcccccc---ccC-chhhHHHH-------hcCCCeeccCCccccchhHHHHHHHhccc
Q 011142 340 GRGLVIWGWAPQV---LILSHPSIGGFLT---HCG-WNSTIEGV-------SAGLPLLTWPLFGDQFMNEKLVVQILKIG 405 (492)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~It---HgG-~~s~~Eal-------~~GvP~v~~P~~~DQ~~na~rv~e~~G~G 405 (492)
..||.+.+++|+. .+++.+++ +|. .-| .+++.||+ ++|+|+|+... + +.-..|
T Consensus 264 ~~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v-~~~~~G 330 (406)
T 2hy7_A 264 GDNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------V-VGPYKS 330 (406)
T ss_dssp CTTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------G-TCSCSS
T ss_pred CCCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------c-ccCcce
Confidence 4589999999864 47889998 653 334 36789999 99999999854 5 354557
Q ss_pred ee-ecccCCcccccccccccccCHHHHHHHHHHHhccC
Q 011142 406 VK-VGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 406 ~~-l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
.. ++. -+.++++++|.++++|+
T Consensus 331 ~l~v~~---------------~d~~~la~ai~~ll~~~ 353 (406)
T 2hy7_A 331 RFGYTP---------------GNADSVIAAITQALEAP 353 (406)
T ss_dssp EEEECT---------------TCHHHHHHHHHHHHHCC
T ss_pred EEEeCC---------------CCHHHHHHHHHHHHhCc
Confidence 66 554 46899999999999987
No 48
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.13 E-value=2.7e-05 Score=77.58 Aligned_cols=79 Identities=16% Similarity=0.079 Sum_probs=56.1
Q ss_pred CCeeeecCCchh---hcccCCCcccccccc---Cc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCC
Q 011142 341 RGLVIWGWAPQV---LILSHPSIGGFLTHC---GW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESP 413 (492)
Q Consensus 341 ~nv~~~~~~pq~---~lL~~~~~~~~ItHg---G~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 413 (492)
.++.+.+++|+. .+++.+++ ||.-. |. +.+.||+++|+|+|+- ..+ ....+ +.-.-|+.++.
T Consensus 295 ~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g----~~e~v-~~~~~G~lv~~--- 363 (413)
T 2x0d_A 295 IHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVITN-KYE----NKDLS-NWHSNIVSLEQ--- 363 (413)
T ss_dssp EEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEEE-CBT----TBCGG-GTBTTEEEESS---
T ss_pred CcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEEe-CCC----cchhh-hcCCCEEEeCC---
Confidence 478888999864 47888998 66421 33 5789999999999983 222 12233 34335766655
Q ss_pred cccccccccccccCHHHHHHHHHHHhccC
Q 011142 414 MIWGEEQKIGVLMKRDDVRNAVEKLMDEG 442 (492)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~ll~~~ 442 (492)
-++++++++|.++++|+
T Consensus 364 ------------~d~~~la~ai~~ll~~~ 380 (413)
T 2x0d_A 364 ------------LNPENIAETLVELCMSF 380 (413)
T ss_dssp ------------CSHHHHHHHHHHHHHHT
T ss_pred ------------CCHHHHHHHHHHHHcCH
Confidence 47899999999999987
No 49
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.83 E-value=0.00024 Score=60.62 Aligned_cols=144 Identities=14% Similarity=0.198 Sum_probs=87.0
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhCC--CCeEEE-EeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchh---hc
Q 011142 281 SVVYACLGSLCNLIPSQMRELGLGLEASN--RPFIWV-IREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQV---LI 354 (492)
Q Consensus 281 ~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~--~~vv~~-~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~l 354 (492)
+++++..|+.. ....+..+++++..+. .++-+. +|.......+.. ...+. ..++.+ +|+|+. .+
T Consensus 2 ~~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~------~~~~~-~~~v~~-g~~~~~~~~~~ 71 (166)
T 3qhp_A 2 PFKIAMVGRYS--NEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKL------LAQKL-GVKAEF-GFVNSNELLEI 71 (166)
T ss_dssp CEEEEEESCCS--TTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHH------HHHHH-TCEEEC-CCCCHHHHHHH
T ss_pred ceEEEEEeccc--hhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHH------HHHHc-CCeEEE-eecCHHHHHHH
Confidence 35677778765 3455777888888763 233333 333322222111 11111 237888 999863 47
Q ss_pred ccCCCcccccc----ccCchhhHHHHhcCC-CeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 355 LSHPSIGGFLT----HCGWNSTIEGVSAGL-PLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 355 L~~~~~~~~It----HgG~~s~~Eal~~Gv-P~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
+..+++ +|. -|...++.||+++|+ |+|+..-. ......+ +..+. .+.. -+.+
T Consensus 72 ~~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~---~~~~~~~-~~~~~--~~~~---------------~~~~ 128 (166)
T 3qhp_A 72 LKTCTL--YVHAANVESEAIACLEAISVGIVPVIANSPL---SATRQFA-LDERS--LFEP---------------NNAK 128 (166)
T ss_dssp HTTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCTT---CGGGGGC-SSGGG--EECT---------------TCHH
T ss_pred HHhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCCC---Cchhhhc-cCCce--EEcC---------------CCHH
Confidence 889998 775 234469999999996 99994321 1122122 12222 2322 5789
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHH
Q 011142 430 DVRNAVEKLMDEGKEGEERRNRAVKLGQ 457 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~~~a~~l~~ 457 (492)
++.++|.++++|++..+.+.+++++..+
T Consensus 129 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 156 (166)
T 3qhp_A 129 DLSAKIDWWLENKLERERMQNEYAKSAL 156 (166)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 9999999999988666667777666553
No 50
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.71 E-value=0.00034 Score=71.76 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=94.9
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEE--EeCCCc-chhhhhccchhhHHHHhcCCCeeeecCCchhh---
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWV--IREGET-SKELKKWVVEDGFEERIKGRGLVIWGWAPQVL--- 353 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~--~~~~~~-~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~--- 353 (492)
..++|.||++.....++.+....+.+.+.+..++|. .+.... ... +-..+...--.+.+++.+.+|..+
T Consensus 440 G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~-----~~~~~~~~GI~~Rv~F~g~~p~~e~la 514 (631)
T 3q3e_A 440 EVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHP-----YVERFIKSYLGDSATAHPHSPYHQYLR 514 (631)
T ss_dssp SEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHH-----HHHHHHHHHHGGGEEEECCCCHHHHHH
T ss_pred CeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHH-----HHHHHHHcCCCccEEEcCCCCHHHHHH
Confidence 358999999988888888988888888887777774 332211 111 111111111135788888888655
Q ss_pred cccCCCccccc---cccCchhhHHHHhcCCCeeccCCccc-cchhHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 354 ILSHPSIGGFL---THCGWNSTIEGVSAGLPLLTWPLFGD-QFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 354 lL~~~~~~~~I---tHgG~~s~~Eal~~GvP~v~~P~~~D-Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
.+..+++ |+ ..+|..|++||+++|||+|+.+...= ...-+..+ ...|+...+- .-+.+
T Consensus 515 ~y~~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL-~~~GLpE~LI---------------A~d~e 576 (631)
T 3q3e_A 515 ILHNCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLF-KRLGLPEWLI---------------ANTVD 576 (631)
T ss_dssp HHHTCSE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHH-HHTTCCGGGE---------------ESSHH
T ss_pred HHhcCcE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHH-HhcCCCccee---------------cCCHH
Confidence 4477887 54 34788999999999999999984321 11122223 2445443211 14678
Q ss_pred HHHHHHHHHhccChhhHHHHHHHH
Q 011142 430 DVRNAVEKLMDEGKEGEERRNRAV 453 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~~~a~ 453 (492)
+..++..++.+|++..+.++++++
T Consensus 577 eYv~~Av~La~D~~~l~~LR~~Lr 600 (631)
T 3q3e_A 577 EYVERAVRLAENHQERLELRRYII 600 (631)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888888889988754444444443
No 51
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.55 E-value=0.001 Score=70.98 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=98.5
Q ss_pred CCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHH-hcCCCeeeecCCchhh---
Q 011142 278 APKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEER-IKGRGLVIWGWAPQVL--- 353 (492)
Q Consensus 278 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq~~--- 353 (492)
+++.+||.||-+.....++.+....+-+++.+.-++|........... +-..+... +.+..+++.+..|..+
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~----l~~~~~~~gi~~~r~~f~~~~~~~~~l~ 595 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPN----IQQYAQNMGLPQNRIIFSPVAPKEEHVR 595 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHH----HHHHHHHTTCCGGGEEEEECCCHHHHHH
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH----HHHHHHhcCCCcCeEEECCCCCHHHHHH
Confidence 345699999999888999999999999999999999988765432110 21112111 2356688888888544
Q ss_pred cccCCCcccccc---ccCchhhHHHHhcCCCeeccCCcc-ccchhHHHHHHHhccceeecccCCcccccccccccccCHH
Q 011142 354 ILSHPSIGGFLT---HCGWNSTIEGVSAGLPLLTWPLFG-DQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 354 lL~~~~~~~~It---HgG~~s~~Eal~~GvP~v~~P~~~-DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
.+..+++ ++. .+|++|++|||+.|||+|.+|... =...-+..+ ...|+...+ .-+.+
T Consensus 596 ~~~~~Di--~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l-~~~gl~e~i----------------a~~~~ 656 (723)
T 4gyw_A 596 RGQLADV--CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQL-TCLGCLELI----------------AKNRQ 656 (723)
T ss_dssp HGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHH-HHHTCGGGB----------------CSSHH
T ss_pred HhCCCeE--EeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHH-HHcCCcccc----------------cCCHH
Confidence 4556776 654 899999999999999999999432 223334445 466665433 24566
Q ss_pred HHHHHHHHHhccChhhHHHH
Q 011142 430 DVRNAVEKLMDEGKEGEERR 449 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~ 449 (492)
+-.+.--++-+|+++...+|
T Consensus 657 ~Y~~~a~~la~d~~~l~~lr 676 (723)
T 4gyw_A 657 EYEDIAVKLGTDLEYLKKVR 676 (723)
T ss_dssp HHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 64444446777764333333
No 52
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.36 E-value=0.0032 Score=55.17 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=65.3
Q ss_pred Ceee-ecCCch---hhcccCCCcccccccc---C-chhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCC
Q 011142 342 GLVI-WGWAPQ---VLILSHPSIGGFLTHC---G-WNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESP 413 (492)
Q Consensus 342 nv~~-~~~~pq---~~lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 413 (492)
|+.+ .+|+++ ..++..+++ +|.-. | ..++.||+++|+|+|+.... ... .+. ..+.|..++.
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~-e~~-~~~~g~~~~~--- 164 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAVG----GLR-DII-TNETGILVKA--- 164 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEESCH----HHH-HHC-CTTTCEEECT---
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeCCC----ChH-HHc-CCCceEEecC---
Confidence 8998 999984 458889998 66432 3 46899999999999987542 222 221 3455666644
Q ss_pred cccccccccccccCHHHHHHHHHHHhc-cChhhHHHHHHHHHHH
Q 011142 414 MIWGEEQKIGVLMKRDDVRNAVEKLMD-EGKEGEERRNRAVKLG 456 (492)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~a~~l~ 456 (492)
-+.+++.++|.++++ |++..+.+.+++++..
T Consensus 165 ------------~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~ 196 (200)
T 2bfw_A 165 ------------GDPGELANAILKALELSRSDLSKFRENCKKRA 196 (200)
T ss_dssp ------------TCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 478999999999999 8865555666655543
No 53
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.36 E-value=0.0034 Score=60.73 Aligned_cols=107 Identities=15% Similarity=0.039 Sum_probs=71.9
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceE-EEEecCCccccCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIK-IVQFQLPCEEAGLPEG 81 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~ 81 (492)
.+++||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. ..++ ++.++. .
T Consensus 6 l~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~--------~- 68 (349)
T 3tov_A 6 LDYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYN--------PNIDELIVVDK--------K- 68 (349)
T ss_dssp CTTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSC--------TTCSEEEEECC--------S-
T ss_pred CCCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC--------CCccEEEEeCc--------c-
Confidence 457899999999999999999999999998 9999999998877665432 2333 444321 0
Q ss_pred CCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCC-cEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRP-NCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
.....+. . ...+.+.+++ .++ |++|.=....-...++...|+|..+-
T Consensus 69 ----------~~~~~~~----~-~~~l~~~Lr~--~~y~D~vidl~~~~rs~~l~~~~~a~~riG 116 (349)
T 3tov_A 69 ----------GRHNSIS----G-LNEVAREINA--KGKTDIVINLHPNERTSYLAWKIHAPITTG 116 (349)
T ss_dssp ----------SHHHHHH----H-HHHHHHHHHH--HCCCCEEEECCCSHHHHHHHHHHCCSEEEE
T ss_pred ----------cccccHH----H-HHHHHHHHhh--CCCCeEEEECCCChHHHHHHHHhCCCeEEe
Confidence 0000010 0 1123344555 589 99996555444556788899998763
No 54
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.32 E-value=0.0095 Score=57.36 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=66.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCce-EEEEecCCccccCCCCCCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQI-KIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~~~~~~ 84 (492)
|||+++...+.|++.-..++.+.|+++ +.+|++++.+.+.+.+... ..+ .++.++. ...
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~--------p~i~~v~~~~~-------~~~--- 62 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPL-------GHG--- 62 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTC--------TTEEEEEEC---------------
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC--------CccCEEEEecC-------Ccc---
Confidence 589999988899999999999999998 9999999998766544321 223 3333321 000
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
. ..+ .....+.+.+++ .+||++|.=....-...++...|+|....
T Consensus 63 -----~-~~~--------~~~~~l~~~l~~--~~~D~vid~~~~~~sa~~~~~~~~~~~ig 107 (348)
T 1psw_A 63 -----A-LEI--------GERRKLGHSLRE--KRYDRAYVLPNSFKSALVPLFAGIPHRTG 107 (348)
T ss_dssp --------CH--------HHHHHHHHHTTT--TTCSEEEECSCCSGGGHHHHHTTCSEEEE
T ss_pred -----c-cch--------HHHHHHHHHHHh--cCCCEEEECCCChHHHHHHHHhCCCEEec
Confidence 0 000 111234455666 78999993222334556788899998543
No 55
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=96.66 E-value=0.0041 Score=59.78 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=79.4
Q ss_pred CeeeecCCchhhc---ccCCCccccccccCc---------hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeec
Q 011142 342 GLVIWGWAPQVLI---LSHPSIGGFLTHCGW---------NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVG 409 (492)
Q Consensus 342 nv~~~~~~pq~~l---L~~~~~~~~ItHgG~---------~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 409 (492)
||.+.+|+|+.++ |+.++..++.+-+.. +-+.|++++|+|+|+.+ ...++..+ ++.|+|+.++
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v-~~~~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELI-ENNGLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHH-HHHTCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHH-HhCCeEEEeC
Confidence 9999999998664 555556545533322 34789999999999754 45677888 6999998773
Q ss_pred ccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011142 410 VESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480 (492)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (492)
+.+++.+++.++. ++..+.+++++++.++.++ .|-....++.+.+.++
T Consensus 290 -----------------~~~e~~~~i~~l~--~~~~~~m~~na~~~a~~~~----~~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 290 -----------------DVEEAIMKVKNVN--EDEYIELVKNVRSFNPILR----KGFFTRRLLTESVFQA 337 (339)
T ss_dssp -----------------SHHHHHHHHHHCC--HHHHHHHHHHHHHHTHHHH----TTHHHHHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHh
Confidence 2577888888765 3456789999999888765 3555566666665544
No 56
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=95.99 E-value=0.046 Score=51.98 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=39.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFN 51 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~ 51 (492)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.+.
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 46 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPS 46 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHH
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHh
Confidence 589999999999999999999999998 99999999988666553
No 57
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=92.14 E-value=0.29 Score=44.09 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=29.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
|||||+.-==+. |.--+..|++.|.+.| +|+++.+...+.
T Consensus 1 ~M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~S 40 (251)
T 2phj_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLS 40 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhcC-CEEEEecCCCcc
Confidence 478888763332 4445889999999998 999999876444
No 58
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=91.80 E-value=1.2 Score=45.39 Aligned_cols=139 Identities=11% Similarity=0.009 Sum_probs=74.5
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHh---CCCCeEEEEeCCCcchhhhhccchhhHHH--HhcCCCeeeecCCchh-
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEA---SNRPFIWVIREGETSKELKKWVVEDGFEE--RIKGRGLVIWGWAPQV- 352 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~---~~~~vv~~~~~~~~~~~~~~~~lp~~~~~--~~~~~nv~~~~~~pq~- 352 (492)
+.|+ ++..|... ..+.+..+++|+.+ .+.++++...+..... ..+.. ...+.++.+..+.++.
T Consensus 326 ~~p~-i~~vgRl~--~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~ 394 (536)
T 3vue_A 326 KIPL-IAFIGRLE--EQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFE--------KLLKSMEEKYPGKVRAVVKFNAPL 394 (536)
T ss_dssp TSCE-EEEECCBS--GGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHH--------HHHHHHHHHSTTTEEEECSCCHHH
T ss_pred CCcE-EEEEeecc--ccCChHHHHHHHHHhHhhCCeEEEEeccCchHH--------HHHHHHHhhcCCceEEEEeccHHH
Confidence 4444 34456654 34456667777764 3556665544332211 11111 1235677777776653
Q ss_pred --hcccCCCccccccc---cCc-hhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccccccccccccc
Q 011142 353 --LILSHPSIGGFLTH---CGW-NSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLM 426 (492)
Q Consensus 353 --~lL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~ 426 (492)
.+++.+++ ||.- =|. .+++||+++|+|+|+.... .....| ++-.-|........ ++---...
T Consensus 395 ~~~~~~~aD~--~v~PS~~E~fgl~~lEAma~G~PvI~s~~g----G~~e~V-~dg~~G~~~~~~~~-----~g~l~~~~ 462 (536)
T 3vue_A 395 AHLIMAGADV--LAVPSRFEPCGLIQLQGMRYGTPCACASTG----GLVDTV-IEGKTGFHMGRLSV-----DCKVVEPS 462 (536)
T ss_dssp HHHHHHHCSE--EEECCSCCSSCSHHHHHHHTTCCEEECSCT----HHHHHC-CBTTTEEECCCCCS-----CTTCCCHH
T ss_pred HHHHHHhhhe--eecccccCCCCHHHHHHHHcCCCEEEcCCC----Cchhee-eCCCCccccccCCC-----ceeEECCC
Confidence 36778888 7643 233 4899999999999987543 333333 23223332211100 00000014
Q ss_pred CHHHHHHHHHHHhc
Q 011142 427 KRDDVRNAVEKLMD 440 (492)
Q Consensus 427 ~~~~l~~ai~~ll~ 440 (492)
+.++|+++|+++++
T Consensus 463 d~~~la~ai~ral~ 476 (536)
T 3vue_A 463 DVKKVAATLKRAIK 476 (536)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 57889999998885
No 59
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=91.46 E-value=0.54 Score=42.59 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=59.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCccc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLD 86 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 86 (492)
|+|||+.-==+. +---+..|++.|.+.| +|+++.+...+.-+-..+ .....+++..+... ......
T Consensus 1 Mp~ILlTNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~si----T~~~pl~~~~~~~~--------~~~~v~ 66 (251)
T 2wqk_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSL----TFTEPLKMRKIDTD--------FYTVID 66 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSC----CCSSCEEEEEEETT--------EEEETT
T ss_pred CCEEEEEcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCc----CCCCCceeEEeecc--------ceeecC
Confidence 567777752222 2334788999999998 599998866443322111 01122333332210 000000
Q ss_pred cccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcC----------CCc---cHHHHHHHcCCCeEEEec
Q 011142 87 MVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDM----------CLP---YTAHIAGKFNIPRITFHG 147 (492)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~----------~~~---~~~~~A~~lgiP~v~~~~ 147 (492)
. .....+ .-.+..++.+ .+||+||+.. ++. +|+.-|..+|||.|.++.
T Consensus 67 G----TPaDCV-------~lal~~~l~~--~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 67 G----TPADCV-------HLGYRVILEE--KKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp C----CHHHHH-------HHHHHTTTTT--CCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred C----ChHHHH-------hhhhhhhcCC--CCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 0 111111 1123345555 6899999832 332 445556789999999864
No 60
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=88.51 E-value=5.7 Score=35.83 Aligned_cols=123 Identities=10% Similarity=0.067 Sum_probs=68.4
Q ss_pred CccEEEEecCC--CcCCHHHHHHHHHHHHhCCCeEEEEeC---C---c--chhhhhhHHHhhhhcCCceEEEEecCCccc
Q 011142 6 NQLHFVLFPFL--AQGHMIPMIDIARLLAQRGVIITIVTT---P---V--NAARFNGILARAIESGLQIKIVQFQLPCEE 75 (492)
Q Consensus 6 ~~~~il~~~~~--~~GH~~p~l~LA~~L~~rGH~Vt~~~~---~---~--~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~ 75 (492)
+.||.+|++.. ..|=..-...|++.|+++|++|.++=+ . . ....+++. .+.......+.+.
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~------~g~~~~~~~~~~~--- 94 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRL------AGVTQLAGLARYP--- 94 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHH------HCCCEEEEEEECS---
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHH------cCCCCCCCCeeEC---
Confidence 34566555533 589999999999999999999999842 1 1 11111111 1111111111110
Q ss_pred cCCCCCCCccccccccchHHHHHHHH-hhhhHHHHHHHHhcCCCCcEEEEcCCC----------ccHHHHHHHcCCCeEE
Q 011142 76 AGLPEGCENLDMVASLGLAFDFFTAA-DMLQEPVENFFAQLKPRPNCIISDMCL----------PYTAHIAGKFNIPRIT 144 (492)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~pDlvI~D~~~----------~~~~~~A~~lgiP~v~ 144 (492)
.+. . ... ....... ....+.+.+.+++...++|+||+|..- .....+|+.++.|+++
T Consensus 95 --~p~--------s-P~~-aa~~~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVIL 162 (251)
T 3fgn_A 95 --QPM--------A-PAA-AAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALV 162 (251)
T ss_dssp --SSS--------C-HHH-HHHHTTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEE
T ss_pred --CCC--------C-hHH-HHHHcCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEE
Confidence 000 0 001 0001111 122345666666655689999999731 2456799999999999
Q ss_pred Eecch
Q 011142 145 FHGTC 149 (492)
Q Consensus 145 ~~~~~ 149 (492)
+....
T Consensus 163 V~~~~ 167 (251)
T 3fgn_A 163 VVTAD 167 (251)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 87664
No 61
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=88.34 E-value=1.4 Score=39.75 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=31.1
Q ss_pred CCccEEEEecCC--CcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 5 ANQLHFVLFPFL--AQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 5 ~~~~~il~~~~~--~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
.+|+|.+|++.. ..|=..-...|++.|+++|.+|.++=
T Consensus 18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 456777777643 58899999999999999999999984
No 62
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=87.75 E-value=7 Score=34.32 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=58.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCC--eEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGV--IITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH--~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
|+||+|+.++.. .-+.++.+.|.+.+| +|..+.+......+....... ++.+..++ +..+.
T Consensus 1 m~rI~vl~SG~g---~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~-----gIp~~~~~--------~~~~~- 63 (216)
T 2ywr_A 1 MLKIGVLVSGRG---SNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKH-----NVECKVIQ--------RKEFP- 63 (216)
T ss_dssp CEEEEEEECSCC---HHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHH-----TCCEEECC--------GGGSS-
T ss_pred CCEEEEEEeCCc---HHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHc-----CCCEEEeC--------ccccc-
Confidence 468988865554 346778888888888 776665443222222222221 46555432 11000
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
. -....+.+.+.+++ .+||+||+=.+. .-...+-......++-+.++
T Consensus 64 -----~----------r~~~~~~~~~~l~~--~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 64 -----S----------KKEFEERMALELKK--KGVELVVLAGFMRILSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp -----S----------HHHHHHHHHHHHHH--TTCCEEEESSCCSCCCHHHHTTSTTCEEEEESS
T ss_pred -----c----------hhhhhHHHHHHHHh--cCCCEEEEeCchhhCCHHHHhhccCCeEEEcCC
Confidence 0 01122345667788 899999986653 33444455555566655444
No 63
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=87.23 E-value=9.2 Score=33.88 Aligned_cols=110 Identities=6% Similarity=-0.022 Sum_probs=61.6
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGC 82 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 82 (492)
.+||||+|+.++.. ..+.++.+.|.+. +++|..+.+......+...... .++.+..++. ..+
T Consensus 20 ~~~~rI~~l~SG~g---~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~-----~gIp~~~~~~--------~~~ 83 (229)
T 3auf_A 20 GHMIRIGVLISGSG---TNLQAILDGCREGRIPGRVAVVISDRADAYGLERARR-----AGVDALHMDP--------AAY 83 (229)
T ss_dssp TTCEEEEEEESSCC---HHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHH-----TTCEEEECCG--------GGS
T ss_pred CCCcEEEEEEeCCc---HHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHH-----cCCCEEEECc--------ccc
Confidence 45789999976653 2467778888877 6888766654221222222221 2576665431 110
Q ss_pred CccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 83 ENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
. . . ....+.+.+.+++ .+||+||+=.+. .-...+-..+...++-+.++
T Consensus 84 ~------~---r-------~~~~~~~~~~l~~--~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 84 P------S---R-------TAFDAALAERLQA--YGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp S------S---H-------HHHHHHHHHHHHH--TTCSEEEESSCCSCCCHHHHHHSTTCEEEEESS
T ss_pred c------c---h-------hhccHHHHHHHHh--cCCCEEEEcChhHhCCHHHHhhccCCEEEEccC
Confidence 0 0 0 1122345667788 899999987653 34444555666666665444
No 64
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=85.87 E-value=1 Score=36.47 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCCCCCccEEEEe-cCCC-cCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 1 MDTQANQLHFVLF-PFLA-QGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 1 m~~~~~~~~il~~-~~~~-~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
|.++.. ||++++ -.|. .-.+.-.+-+...|.++||+|++++++.....++
T Consensus 1 ~~~~~~-m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLle 52 (157)
T 1kjn_A 1 MKTEST-GKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQ 52 (157)
T ss_dssp -----C-CEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred Cccccc-eeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhhee
Confidence 455543 455444 4666 5566668889999999999999999998665554
No 65
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=84.03 E-value=12 Score=32.15 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=61.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch--hhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA--ARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
+-.|++++..+.|-..-.+.+|-+.+.+|++|.|+..-... .--.+.+.. .++.++.... ++..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~-----L~v~~~~~g~---------gf~~ 93 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEP-----HGVEFQVMAT---------GFTW 93 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGG-----GTCEEEECCT---------TCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHh-----CCcEEEEccc---------cccc
Confidence 35688899899999999999999999999999999643210 000111111 1366665431 2221
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP 129 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~ 129 (492)
. . .....-............+.+.+ .++|+||.|.+.+
T Consensus 94 ~--~---~~~~~~~~~a~~~l~~a~~~l~~--~~yDlvILDEi~~ 131 (196)
T 1g5t_A 94 E--T---QNREADTAACMAVWQHGKRMLAD--PLLDMVVLDELTY 131 (196)
T ss_dssp C--G---GGHHHHHHHHHHHHHHHHHHTTC--TTCSEEEEETHHH
T ss_pred C--C---CCcHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCc
Confidence 1 0 11111122223444555666666 7899999998753
No 66
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=82.86 E-value=5.1 Score=40.06 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=67.6
Q ss_pred ee-eecCCchh---hcccCCCcccccc---ccCch-hhHHHHhcCC-----CeeccCCccccchhHHHHHHHhccceeec
Q 011142 343 LV-IWGWAPQV---LILSHPSIGGFLT---HCGWN-STIEGVSAGL-----PLLTWPLFGDQFMNEKLVVQILKIGVKVG 409 (492)
Q Consensus 343 v~-~~~~~pq~---~lL~~~~~~~~It---HgG~~-s~~Eal~~Gv-----P~v~~P~~~DQ~~na~rv~e~~G~G~~l~ 409 (492)
++ +.+++++. .+++.+++ ||. .=|+| +..||+++|+ |+|+--..+ .+. ...-|+.++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G----~~~----~l~~g~lv~ 402 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG----AAN----ELTSALIVN 402 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBG----GGG----TCTTSEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCC----CHH----HhCCeEEEC
Confidence 44 45778764 47788888 664 44664 8999999998 666544322 111 112366665
Q ss_pred ccCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 011142 410 VESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (492)
+ -+.++++++|.++|+++.. ..+++.++.++.+ ++ -+...-++.+++.+.+.
T Consensus 403 p---------------~d~~~lA~ai~~lL~~~~~--~r~~~~~~~~~~v----~~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 403 P---------------YDRDEVAAALDRALTMSLA--ERISRHAEMLDVI----VK-NDINHWQECFISDLKQI 454 (482)
T ss_dssp T---------------TCHHHHHHHHHHHHTCCHH--HHHHHHHHHHHHH----HH-TCHHHHHHHHHHHHHHS
T ss_pred C---------------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH----Hh-CCHHHHHHHHHHHHHhc
Confidence 5 4689999999999986521 2223333333333 22 45667777888888766
No 67
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=82.34 E-value=1 Score=45.87 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCccEEEEecCC------CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFL------AQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~------~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.+.|||+++++- ..|=-.-.-.|.++|+++||+|+++++.
T Consensus 7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 457999999732 1222234678999999999999999863
No 68
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=82.08 E-value=1.7 Score=38.03 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=36.7
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARF 50 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v 50 (492)
+++||++...++.|-.. ...|.+.|.++|++|.++.++.....+
T Consensus 3 ~~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~A~~fi 46 (209)
T 3zqu_A 3 GPERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKAAQLVM 46 (209)
T ss_dssp SCSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHHHHHHH
T ss_pred CCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 35689988888888777 889999999999999999998755544
No 69
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=81.44 E-value=18 Score=33.73 Aligned_cols=39 Identities=15% Similarity=-0.022 Sum_probs=25.9
Q ss_pred CCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011142 3 TQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVN 46 (492)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 46 (492)
.||++|||+|+-.+.+ .....+.|.++||+|..+.+.+.
T Consensus 3 ~m~~~mrivf~Gt~~f-----a~~~L~~L~~~~~~v~~Vvt~pd 41 (318)
T 3q0i_A 3 AMSQSLRIVFAGTPDF-----AARHLAALLSSEHEIIAVYTQPE 41 (318)
T ss_dssp ----CCEEEEECCSHH-----HHHHHHHHHTSSSEEEEEECCCC
T ss_pred ccccCCEEEEEecCHH-----HHHHHHHHHHCCCcEEEEEcCCC
Confidence 3467899999966533 33556788889999988877543
No 70
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=81.02 E-value=2.4 Score=38.13 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=27.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 49 (492)
||||+.-==+. |---+..|++.|++.| +|+++.+...+.-
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg 40 (247)
T 1j9j_A 1 MRILVTNDDGI-QSKGIIVLAELLSEEH-EVFVVAPDKERSA 40 (247)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTT
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcC
Confidence 46766652222 3334889999999988 8999999765443
No 71
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=80.70 E-value=20 Score=31.27 Aligned_cols=108 Identities=8% Similarity=0.054 Sum_probs=59.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
|+||.++-++..+ .+.++.+.|.+. +|+|..+.+......+...... .++.+..++. ..+.
T Consensus 3 m~ki~vl~sG~g~---~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~-----~gIp~~~~~~--------~~~~- 65 (212)
T 3av3_A 3 MKRLAVFASGSGT---NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAAR-----ENVPAFVFSP--------KDYP- 65 (212)
T ss_dssp CEEEEEECCSSCH---HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHH-----TTCCEEECCG--------GGSS-
T ss_pred CcEEEEEEECCcH---HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHH-----cCCCEEEeCc--------cccc-
Confidence 5788888665533 366777888877 7898877654322222222221 2565554321 1000
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
. -....+.+.+.+++ .+||+||+=.+. .-...+-..+...++-+.++
T Consensus 66 -----~----------~~~~~~~~~~~l~~--~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 66 -----S----------KAAFESEILRELKG--RQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp -----S----------HHHHHHHHHHHHHH--TTCCEEEESSCCSCCCHHHHHHTTTCEEEEESS
T ss_pred -----c----------hhhhHHHHHHHHHh--cCCCEEEEchhhhhCCHHHHhhhcCCEEEEecC
Confidence 0 01122345667778 899999977653 34444555665666665444
No 72
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=80.38 E-value=11 Score=35.47 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=34.5
Q ss_pred CccEEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011142 6 NQLHFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTTPVN 46 (492)
Q Consensus 6 ~~~~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 46 (492)
++++|+|++ -++-|-..-..+||..|+++|++|.++.....
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 356787777 45699999999999999999999999998753
No 73
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=79.20 E-value=4.1 Score=32.85 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=35.3
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++.||++.+.++-.|-....-++..|..+|++|+......
T Consensus 2 ~~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~ 41 (137)
T 1ccw_A 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS 41 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 3568999999999999999999999999999999887643
No 74
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=78.42 E-value=2.9 Score=43.45 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=25.7
Q ss_pred hcccCCCccccccc---cCc-hhhHHHHhcCCCeeccCCc
Q 011142 353 LILSHPSIGGFLTH---CGW-NSTIEGVSAGLPLLTWPLF 388 (492)
Q Consensus 353 ~lL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~ 388 (492)
++++.+++ ||.- =|+ .+.+||+++|+|+|+.-..
T Consensus 514 ~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 514 EFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp HHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred HHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 46788888 6643 333 5899999999999987544
No 75
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=77.19 E-value=22 Score=28.34 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=22.9
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|...+++++|+++- .+-.-...|.+.|.+.|++|..+.+
T Consensus 1 Ms~~~~~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~ 39 (154)
T 2rjn_A 1 MSLNYKNYTVMLVD----DEQPILNSLKRLIKRLGCNIITFTS 39 (154)
T ss_dssp ---CCSCCEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESC
T ss_pred CCCCCCCCeEEEEc----CCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 56566677887774 3444455666677777777764443
No 76
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=76.79 E-value=3 Score=36.41 Aligned_cols=44 Identities=7% Similarity=0.026 Sum_probs=35.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARF 50 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v 50 (492)
.+..||++...++.+-.. ...|.+.|.++| +|.++.++.....+
T Consensus 17 l~~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~A~~fv 60 (209)
T 1mvl_A 17 PRKPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKSSLHFL 60 (209)
T ss_dssp --CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTGGGGTC
T ss_pred cCCCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcchHHHhc
Confidence 446789999988888766 889999999999 99999998755443
No 77
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=76.73 E-value=12 Score=33.53 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=27.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
||||+.-==+. |---+..|++.|++.| +|+++.+...+.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~S 39 (244)
T 2e6c_A 1 MRILVTNDDGI-YSPGLWALAEAASQFG-EVFVAAPDTEQS 39 (244)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEECSSCC
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCc
Confidence 46766652222 3334889999999988 899999876444
No 78
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=75.93 E-value=6.7 Score=35.89 Aligned_cols=40 Identities=8% Similarity=0.025 Sum_probs=27.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 49 (492)
||||+.-==+. +---+..|++.|++.| +|+++.+...+.-
T Consensus 1 M~ILlTNDDGi-~ApGi~aL~~aL~~~g-~V~VVAP~~~qSg 40 (280)
T 1l5x_A 1 MKILVTNDDGV-HSPGLRLLYQFALSLG-DVDVVAPESPKSA 40 (280)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHGGGS-EEEEEEESSCTTT
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcC
Confidence 46766652222 3334889999999998 9999999765443
No 79
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=75.76 E-value=3 Score=37.60 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=28.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 49 (492)
||||+.-==+. |---+..|++.|++.| +|+++.+...+.-
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~~~~Sg 41 (254)
T 2v4n_A 2 MRILLSNDDGV-HAPGIQTLAKALREFA-DVQVVAPDRNRSG 41 (254)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeCCCCcC
Confidence 57777653332 3345888999998886 9999999765443
No 80
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=74.69 E-value=9.4 Score=36.89 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=27.6
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|++++||+++-.+.. -+.+++.+++.|++|+++..+.
T Consensus 4 m~~~~~ilI~g~g~~-----~~~~~~a~~~~G~~~v~v~~~~ 40 (403)
T 4dim_A 4 MYDNKRLLILGAGRG-----QLGLYKAAKELGIHTIAGTMPN 40 (403)
T ss_dssp --CCCEEEEECCCGG-----GHHHHHHHHHHTCEEEEEECSS
T ss_pred ccCCCEEEEECCcHh-----HHHHHHHHHHCCCEEEEEcCCC
Confidence 466789999865543 3568999999999999997643
No 81
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=74.64 E-value=16 Score=35.03 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=31.9
Q ss_pred ccEEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFL-AQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|++|++++.- +-|-..-..+||..|+++|++|.++..
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 5788888754 588999999999999999999999988
No 82
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=74.44 E-value=28 Score=27.85 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=18.8
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|....+++||+++- .+-.-...|.+.|.+.|++|..+.
T Consensus 1 M~~~~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~ 38 (154)
T 3gt7_A 1 MSLSNRAGEILIVE----DSPTQAEHLKHILEETGYQTEHVR 38 (154)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHTTTCEEEEES
T ss_pred CCcccCCCcEEEEe----CCHHHHHHHHHHHHHCCCEEEEeC
Confidence 44444556777763 344445556666666677665443
No 83
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=74.38 E-value=4.6 Score=34.67 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=35.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
.||++...++.|-. =...|.+.|.++|++|.++.++.....+.
T Consensus 2 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~~i~ 44 (189)
T 2ejb_A 2 QKIALCITGASGVI-YGIKLLQVLEELDFSVDLVISRNAKVVLK 44 (189)
T ss_dssp CEEEEEECSSTTHH-HHHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHhh
Confidence 58999988888855 57889999999999999999987555444
No 84
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=74.02 E-value=2.4 Score=36.60 Aligned_cols=47 Identities=6% Similarity=-0.123 Sum_probs=37.1
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
+.+..||++...++.|=.. ...|.+.|.++|++|.++.++.....+.
T Consensus 5 ~l~~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~A~~fi~ 51 (194)
T 1p3y_1 5 ILKDKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKTAEDLIP 51 (194)
T ss_dssp TGGGCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHHHHHHSC
T ss_pred ccCCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchhHHHHHH
Confidence 3455789888888877665 6899999999999999999987555443
No 85
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=73.47 E-value=3.5 Score=35.63 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=35.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFN 51 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~ 51 (492)
|||++...++.|-.. ...|.+.|.++ |++|.++.++.....+.
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~A~~fi~ 44 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKWAKTTIE 44 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHHHHHHHH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECchHHHHhH
Confidence 588888888877765 89999999999 99999999987655444
No 86
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=72.43 E-value=4.8 Score=34.06 Aligned_cols=43 Identities=5% Similarity=-0.035 Sum_probs=35.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
+||++...++.|=.. ...+.+.|+++|++|.++.++.....+.
T Consensus 6 k~IllgvTGs~aa~k-~~~ll~~L~~~g~~V~vv~T~~A~~fi~ 48 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN-ISHYIIELKSKFDEVNVIASTNGRKFIN 48 (175)
T ss_dssp CEEEEEECSSGGGGG-HHHHHHHHTTTCSEEEEEECTGGGGGSC
T ss_pred CEEEEEEeCHHHHHH-HHHHHHHHHHCCCEEEEEECcCHHHHhh
Confidence 588888877766665 8899999999999999999987665443
No 87
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=70.61 E-value=14 Score=35.15 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=34.0
Q ss_pred CccEEEEecC-CCcCCHHHHHHHHHHHH--hCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPF-LAQGHMIPMIDIARLLA--QRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~-~~~GH~~p~l~LA~~L~--~rGH~Vt~~~~~~ 45 (492)
+.++|++++. ++-|-..-..+||..|+ ++|++|.++....
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3467877774 56999999999999999 8999999999874
No 88
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=70.09 E-value=54 Score=28.42 Aligned_cols=107 Identities=7% Similarity=0.010 Sum_probs=59.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
+||+++.++..+ -+.+|.+.+.+. +|+|..+.+........+.... .++.+..++. ..+.
T Consensus 1 ~ri~vl~Sg~gs---nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~-----~gIp~~~~~~--------~~~~-- 62 (212)
T 1jkx_A 1 MNIVVLISGNGS---NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQ-----AGIATHTLIA--------SAFD-- 62 (212)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHH-----TTCEEEECCG--------GGCS--
T ss_pred CEEEEEEECCcH---HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHH-----cCCcEEEeCc--------cccc--
Confidence 478887765543 367777777776 6888777654322222222222 2576665321 1000
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
. -....+.+.+.+++ .+||+||+=.+. .-...+-..+...++-+.++
T Consensus 63 ----~----------r~~~~~~~~~~l~~--~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 110 (212)
T 1jkx_A 63 ----S----------REAYDRELIHEIDM--YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPS 110 (212)
T ss_dssp ----S----------HHHHHHHHHHHHGG--GCCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ----c----------hhhccHHHHHHHHh--cCCCEEEEeChhhhCCHHHHhhccCCEEEEccC
Confidence 0 01122445677888 799999987653 33444555666666765444
No 89
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=70.05 E-value=6 Score=32.92 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=36.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++.||++.+.++-.|-....-++..|...|++|++.....
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~ 56 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ 56 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 4689999999999999999999999999999999987543
No 90
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=69.94 E-value=20 Score=35.79 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=71.9
Q ss_pred CeeeecCCch---hhcccCCCcccccc---ccCch-hhHHHHhcC---CCeeccCCccccchhHHHHHHHhc-cceeecc
Q 011142 342 GLVIWGWAPQ---VLILSHPSIGGFLT---HCGWN-STIEGVSAG---LPLLTWPLFGDQFMNEKLVVQILK-IGVKVGV 410 (492)
Q Consensus 342 nv~~~~~~pq---~~lL~~~~~~~~It---HgG~~-s~~Eal~~G---vP~v~~P~~~DQ~~na~rv~e~~G-~G~~l~~ 410 (492)
.|++...+|+ ..++..+++ |+. .=|+| ...|++++| .|+|+--+ -..+. .+| -|+.+++
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv--~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~----aGa~~----~l~~~allVnP 422 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL--LIFNSTVDGQNLSTFEAPLVNERDADVILSET----CGAAE----VLGEYCRSVNP 422 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE--EEECCSSBSCCSHHHHHHHHCSSCCEEEEETT----BTTHH----HHGGGSEEECT
T ss_pred CEEEeCCCCHHHHHHHHHhccE--EEECcccccCChhHHHHHHhCCCCCCEEEeCC----CCCHH----HhCCCEEEECC
Confidence 5777677776 446777888 553 46887 568999996 55554422 22232 333 4777766
Q ss_pred cCCcccccccccccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 011142 411 ESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKH 483 (492)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 483 (492)
.+.++++++|.++|+++. ++-+++.+++.+.++ .-++..=++.+++++...
T Consensus 423 ---------------~D~~~lA~AI~~aL~m~~--~er~~r~~~~~~~V~-----~~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 423 ---------------FDLVEQAEAISAALAAGP--RQRAEAAARRRDAAR-----PWTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp ---------------TBHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHT-----TCBHHHHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHhhc
Confidence 478999999999998762 134444445544443 356677788899888764
No 91
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=69.80 E-value=17 Score=30.86 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=30.4
Q ss_pred cEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
||++.+. -++-|-..-...||..|+++|++|.++-...
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3554444 4568999999999999999999999997654
No 92
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=69.05 E-value=5.2 Score=34.56 Aligned_cols=39 Identities=10% Similarity=-0.125 Sum_probs=29.4
Q ss_pred HHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecchHHH
Q 011142 109 ENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTCCFC 152 (492)
Q Consensus 109 ~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 152 (492)
.+.+++ .+.|+||.|.. ...+|+++|+|.+.+.++....
T Consensus 135 i~~l~~--~G~~vvVG~~~---~~~~A~~~Gl~~vli~sg~eSI 173 (196)
T 2q5c_A 135 ISKVKT--ENIKIVVSGKT---VTDEAIKQGLYGETINSGEESL 173 (196)
T ss_dssp HHHHHH--TTCCEEEECHH---HHHHHHHTTCEEEECCCCHHHH
T ss_pred HHHHHH--CCCeEEECCHH---HHHHHHHcCCcEEEEecCHHHH
Confidence 334444 59999999944 6889999999999987754433
No 93
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=68.71 E-value=5.6 Score=34.47 Aligned_cols=43 Identities=12% Similarity=-0.061 Sum_probs=34.2
Q ss_pred CCccEEEEecCCCcCCHH-HHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 5 ANQLHFVLFPFLAQGHMI-PMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~-p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
.++.||++.-.++ +..+ =...|.+.|.++|++|.++.++....
T Consensus 5 l~~k~I~lgiTGs-~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~ 48 (201)
T 3lqk_A 5 FAGKHVGFGLTGS-HCTYHEVLPQMERLVELGAKVTPFVTHTVQT 48 (201)
T ss_dssp CTTCEEEEECCSC-GGGGGGTHHHHHHHHHTTCEEEEECSSCSCC
T ss_pred cCCCEEEEEEECh-HHHHHHHHHHHHHHhhCCCEEEEEEChhHHH
Confidence 3456898888777 4455 78899999999999999999976433
No 94
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=67.80 E-value=34 Score=31.83 Aligned_cols=35 Identities=14% Similarity=-0.010 Sum_probs=24.5
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++|||+|+-.+.+ .....+.|.+.||+|..+.+..
T Consensus 2 ~~mrIvf~Gt~~f-----a~~~L~~L~~~~~~i~~Vvt~p 36 (314)
T 1fmt_A 2 ESLRIIFAGTPDF-----AARHLDALLSSGHNVVGVFTQP 36 (314)
T ss_dssp CCCEEEEEECSHH-----HHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCEEEEEecCHH-----HHHHHHHHHHCCCcEEEEEeCC
Confidence 4689999976543 2345577777899998777643
No 95
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=67.72 E-value=41 Score=31.50 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=56.9
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch----hhhhhHHHhhhhcCCceEEEEecCCccccCCCCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA----ARFNGILARAIESGLQIKIVQFQLPCEEAGLPEG 81 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~----~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 81 (492)
..|||+|+ |--+....+.+.|.++||+|..+.+.+.. ..+...... .++.+.... .
T Consensus 21 ~~mrIvf~-----G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~-----~gIpv~~~~----------~ 80 (329)
T 2bw0_A 21 QSMKIAVI-----GQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEK-----DGVPVFKYS----------R 80 (329)
T ss_dssp CCCEEEEE-----CCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHH-----HTCCEEECS----------C
T ss_pred CCCEEEEE-----cCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHH-----cCCCEEecC----------c
Confidence 34899999 22344445778999999998877652211 122222111 145544421 0
Q ss_pred CCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecch
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~~ 149 (492)
... . ....+.+.+.+++ .+||++|+=.+. .-...+-......++-+.++.
T Consensus 81 ~~~-----~-----------~~~~~~~~~~l~~--~~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSL 131 (329)
T 2bw0_A 81 WRA-----K-----------GQALPDVVAKYQA--LGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSL 131 (329)
T ss_dssp CEE-----T-----------TEECHHHHHHHHT--TCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSC
T ss_pred ccc-----c-----------ccccHHHHHHHHh--cCCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCc
Confidence 000 0 0112334556777 799999976653 233444455555677665554
No 96
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=67.72 E-value=28 Score=30.32 Aligned_cols=106 Identities=9% Similarity=0.084 Sum_probs=56.5
Q ss_pred CCCCccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCc-chhhhhhHHHhhhhcCCceEEEEecCCccccCCC
Q 011142 3 TQANQLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPV-NAARFNGILARAIESGLQIKIVQFQLPCEEAGLP 79 (492)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 79 (492)
++.+++||+++.++..+- +.+|.+.+.+. +++|..+.+.. ...-.+. ... .++.+..++.
T Consensus 4 ~~~~~~ri~vl~SG~gsn---l~all~~~~~~~~~~~I~~Vis~~~~a~~l~~-A~~-----~gIp~~~~~~-------- 66 (215)
T 3kcq_A 4 SMKKELRVGVLISGRGSN---LEALAKAFSTEESSVVISCVISNNAEARGLLI-AQS-----YGIPTFVVKR-------- 66 (215)
T ss_dssp ---CCEEEEEEESSCCHH---HHHHHHHTCCC-CSEEEEEEEESCTTCTHHHH-HHH-----TTCCEEECCB--------
T ss_pred CCCCCCEEEEEEECCcHH---HHHHHHHHHcCCCCcEEEEEEeCCcchHHHHH-HHH-----cCCCEEEeCc--------
Confidence 455678998887655432 45566666554 37888776632 1111111 111 2566554421
Q ss_pred CCCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 80 EGCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
..+ . .+.+.+.+++ .+||+||+=.+. .-...+-....-.++-+.++
T Consensus 67 ~~~---------~------------~~~~~~~L~~--~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpS 113 (215)
T 3kcq_A 67 KPL---------D------------IEHISTVLRE--HDVDLVCLAGFMSILPEKFVTDWHHKIINIHPS 113 (215)
T ss_dssp TTB---------C------------HHHHHHHHHH--TTCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ccC---------C------------hHHHHHHHHH--hCCCEEEEeCCceEeCHHHHhhccCCeEEECcc
Confidence 100 0 0556778888 899999977653 33444555555566655444
No 97
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=67.00 E-value=45 Score=28.71 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=18.6
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEE
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITI 40 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~ 40 (492)
|.+.++.+||+++- .|-.-...|...|.+.|++|..
T Consensus 1 M~~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~ 36 (233)
T 1ys7_A 1 MDTGVTSPRVLVVD----DDSDVLASLERGLRLSGFEVAT 36 (233)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCCCeEEEEe----CCHHHHHHHHHHHHhCCCEEEE
Confidence 56666667777764 3444455666666666776653
No 98
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=66.92 E-value=12 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=40.3
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHH
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGIL 54 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~ 54 (492)
+..+|++.+.++-.|-....-++..|..+|++|+++......+.+.+..
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~ 135 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAV 135 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 3568999999999999999999999999999999988754444444433
No 99
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=66.12 E-value=30 Score=32.65 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=36.6
Q ss_pred CccEEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 6 NQLHFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 6 ~~~~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
++.+|+|++ -++-|-..-..+||..|+++|++|.++.... ...+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~ 71 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSLRDI 71 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCHHHH
Confidence 456676666 4569999999999999999999999999876 3334433
No 100
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=64.17 E-value=6.6 Score=36.06 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=24.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|||++. ++.|-+- ..|++.|.++||+|+.++-
T Consensus 1 MkILVT--GatGfIG--~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 1 MRVLVG--GGTGFIG--TALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEEC
Confidence 687766 4555554 4689999999999999874
No 101
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=63.32 E-value=11 Score=35.56 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=35.4
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
+++.-.|+.|-..-++.+|..++..|..|.|++.+.....+.
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~ 90 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLA 90 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 566667899999999999999999999999999986654443
No 102
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=62.54 E-value=33 Score=28.47 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=78.7
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCC
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPS 359 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~ 359 (492)
+|.|-|-+||.. +-....+....++.++..+-..+.+-.. .|+...+ |..+.. -...+
T Consensus 11 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaHR--------~p~~l~~-----------~~~~a~-~~g~~ 68 (170)
T 1xmp_A 11 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSAHR--------TPDYMFE-----------YAETAR-ERGLK 68 (170)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTTT--------SHHHHHH-----------HHHHTT-TTTCC
T ss_pred CCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC--------CHHHHHH-----------HHHHHH-hCCCc
Confidence 456777788866 4455666777778888876665544332 3432211 111100 01123
Q ss_pred ccccccccCch----hhHHHHhcCCCeeccCCccc--cc-hhHHHHHHH--hcccee-ecccCCcccccccccccccCHH
Q 011142 360 IGGFLTHCGWN----STIEGVSAGLPLLTWPLFGD--QF-MNEKLVVQI--LKIGVK-VGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 360 ~~~~ItHgG~~----s~~Eal~~GvP~v~~P~~~D--Q~-~na~rv~e~--~G~G~~-l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
+ +|.=+|.. ++.-+ ..-.|+|.+|.... .. +--.-++ + .|+.+. +..+ +.+..++.
T Consensus 69 V--iIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~daLlSiv-qmP~GvpVatV~I~----------~a~~~nAa 134 (170)
T 1xmp_A 69 V--IIAGAGGAAHLPGMVAA-KTNLPVIGVPVQSKALNGLDSLLSIV-QMPGGVPVATVAIG----------KAGSTNAG 134 (170)
T ss_dssp E--EEEEEESSCCHHHHHHT-TCCSCEEEEEECCTTTTTHHHHHHHH-CCCTTCCCEECCSS----------HHHHHHHH
T ss_pred E--EEEECCchhhhHHHHHh-ccCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCeeEEEecC----------CcchHHHH
Confidence 3 77776654 33333 34689999997542 11 2122233 5 555432 1111 00135666
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhc
Q 011142 430 DVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQE 465 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (492)
.++..|-. +.|+ ..+++.+.+++..++.+.+
T Consensus 135 llAaqIla-~~d~----~l~~kl~~~r~~~~~~v~~ 165 (170)
T 1xmp_A 135 LLAAQILG-SFHD----DIHDALELRREAIEKDVRE 165 (170)
T ss_dssp HHHHHHHH-TTCH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc-cCCH----HHHHHHHHHHHHHHHHHHh
Confidence 67666653 4455 8888998888887766544
No 103
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=62.40 E-value=15 Score=33.24 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=35.6
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+..||++.+.++-.|-....-++..|..+|++|++++..
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~ 160 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD 160 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC
Confidence 467899999999999999999999999999999988753
No 104
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=61.55 E-value=8.9 Score=33.35 Aligned_cols=42 Identities=7% Similarity=-0.130 Sum_probs=31.9
Q ss_pred CCccEEEEecCCCcCCHHH-HHHHHHHHHhCCCeEEEEeCCcch
Q 011142 5 ANQLHFVLFPFLAQGHMIP-MIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p-~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
.+..||++...++ +..+- ...|.+.|.++|++|.++.++...
T Consensus 3 l~~k~IllgiTGs-iaayk~~~~ll~~L~~~g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 3 LKGKRIGFGFTGS-HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQ 45 (207)
T ss_dssp CTTCEEEEEECSC-GGGGTTSHHHHHHHHHTTCEEEEEECC---
T ss_pred CCCCEEEEEEECh-HHHHHHHHHHHHHHHhCCCEEEEEEehHHH
Confidence 3456898888776 44554 789999999999999999998644
No 105
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=60.35 E-value=7.4 Score=33.08 Aligned_cols=42 Identities=10% Similarity=0.013 Sum_probs=33.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARF 50 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v 50 (492)
.||++...++.+=. =...+.+.|.++|++|.++.++.....+
T Consensus 3 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~fi 44 (181)
T 1g63_A 3 GKLLICATASINVI-NINHYIVELKQHFDEVNILFSPSSKNFI 44 (181)
T ss_dssp CCEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGGGGTS
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHHHHH
Confidence 47888777776655 5789999999999999999998755444
No 106
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=59.23 E-value=17 Score=27.66 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=31.0
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+|+||+++|..+.|--.-.-.+-+.+.++|.++.+-..
T Consensus 1 M~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~ 39 (106)
T 1e2b_A 1 MEKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAF 39 (106)
T ss_dssp CCCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred CCCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 346799999988877667777888999999998876554
No 107
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=59.02 E-value=54 Score=26.94 Aligned_cols=139 Identities=9% Similarity=-0.008 Sum_probs=70.9
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCc
Q 011142 281 SVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSI 360 (492)
Q Consensus 281 ~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~ 360 (492)
|.|-|-+||.. +-....+....++.++..+-..+.+-.. .|+... .|+.+.. ..-..
T Consensus 3 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~saHR--------~p~~~~-----------~~~~~a~--~~~~~ 59 (159)
T 3rg8_A 3 PLVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSAHK--------TAEHVV-----------SMLKEYE--ALDRP 59 (159)
T ss_dssp CEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCTTT--------CHHHHH-----------HHHHHHH--TSCSC
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcccC--------CHHHHH-----------HHHHHhh--hcCCC
Confidence 34666677766 4445566777777777766655544332 333221 1111111 00012
Q ss_pred cccccccCch----hhHHHHhcCCCeeccCCcc---ccchhHHHHHHHh--ccceeecccCCcccccccccccccCHHHH
Q 011142 361 GGFLTHCGWN----STIEGVSAGLPLLTWPLFG---DQFMNEKLVVQIL--KIGVKVGVESPMIWGEEQKIGVLMKRDDV 431 (492)
Q Consensus 361 ~~~ItHgG~~----s~~Eal~~GvP~v~~P~~~---DQ~~na~rv~e~~--G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 431 (492)
+++|.=+|.. ++.-+ ..-.|+|.+|... +..+ -.-+. +. |+.+.-- + ...++..+
T Consensus 60 ~ViIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~d-LlS~v-qmp~GvpVatv-~------------~~~nAa~l 123 (159)
T 3rg8_A 60 KLYITIAGRSNALSGFVDG-FVKGATIACPPPSDSFAGAD-IYSSL-RMPSGISPALV-L------------EPKNAALL 123 (159)
T ss_dssp EEEEEECCSSCCHHHHHHH-HSSSCEEECCCCCCGGGGTH-HHHHH-CCCTTCCCEEC-C------------SHHHHHHH
T ss_pred cEEEEECCchhhhHHHHHh-ccCCCEEEeeCCCCCCCCcc-HHHHH-hCCCCCceEEe-c------------CchHHHHH
Confidence 2377766653 44433 3568999999643 2223 23332 33 4443211 2 13566666
Q ss_pred HHHHHHHhccChhhHHHHHHHHHHHHHHHHHH
Q 011142 432 RNAVEKLMDEGKEGEERRNRAVKLGQMANMAV 463 (492)
Q Consensus 432 ~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~ 463 (492)
+..|-.+ .|+ ..+++.+.+++...+.+
T Consensus 124 A~~Il~~-~d~----~l~~kl~~~r~~~~~~v 150 (159)
T 3rg8_A 124 AARIFSL-YDK----EIADSVKSYMESNAQKI 150 (159)
T ss_dssp HHHHHTT-TCH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCH----HHHHHHHHHHHHHHHHH
Confidence 6555433 345 77777777777665443
No 108
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=58.60 E-value=68 Score=29.72 Aligned_cols=35 Identities=17% Similarity=0.046 Sum_probs=26.3
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVN 46 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 46 (492)
+|||+|+-.+.++- ...+.|.+.||+|..+.+.+.
T Consensus 2 ~mrivf~Gtp~fa~-----~~L~~L~~~~~~v~~Vvt~pd 36 (314)
T 3tqq_A 2 SLKIVFAGTPQFAV-----PTLRALIDSSHRVLAVYTQPD 36 (314)
T ss_dssp CCEEEEEECSGGGH-----HHHHHHHHSSSEEEEEECCCC
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCCC
Confidence 47999997776543 456788889999988877543
No 109
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=58.29 E-value=56 Score=30.17 Aligned_cols=40 Identities=20% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 107 PVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
.+.+.+++ .+||+||+=.+. .-...+-......++-+.++
T Consensus 66 ~~~~~l~~--~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpS 106 (305)
T 2bln_A 66 LWVERIAQ--LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGS 106 (305)
T ss_dssp HHHHHHHH--TCCSEEEEESCCSCCCHHHHTTCTTCEEEEESS
T ss_pred HHHHHHHh--cCCCEEEEeccccccCHHHHhcCcCCEEEecCC
Confidence 34566777 799999976543 33344445555567766665
No 110
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=58.24 E-value=4.7 Score=42.73 Aligned_cols=124 Identities=8% Similarity=0.022 Sum_probs=81.3
Q ss_pred eecCCchhhcccCCCccccccccCchhhHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCccccccccccc
Q 011142 345 IWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGV 424 (492)
Q Consensus 345 ~~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~ 424 (492)
+..+.+-.++|..+++ +||= =...+.|.+..+.|+|......|+..+- .. |...+..+ +-+ +..
T Consensus 603 ~~~~~di~~ll~~aD~--lITD-ySSv~fD~~~l~kPiif~~~D~~~Y~~~-----~r--g~y~d~~~---~~p---g~~ 666 (729)
T 3l7i_A 603 VSNYNDVSELFLISDC--LITD-YSSVMFDYGILKRPQFFFAYDIDKYDKG-----LR--GFYMNYME---DLP---GPI 666 (729)
T ss_dssp CTTCSCHHHHHHTCSE--EEES-SCTHHHHHGGGCCCEEEECTTTTTTTSS-----CC--SBSSCTTS---SSS---SCE
T ss_pred CCCCcCHHHHHHHhCE--EEee-chHHHHhHHhhCCCEEEecCCHHHHhhc-----cC--CcccChhH---hCC---CCe
Confidence 3345556779999998 9997 3467899999999999987666665321 12 22332210 000 012
Q ss_pred ccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcccccc
Q 011142 425 LMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMKHVHSTS 488 (492)
Q Consensus 425 ~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~ 488 (492)
.-+.++|.++|.+...+. +.++++.+++.+.+... ++|.++...++.+++....-..+||
T Consensus 667 ~~~~~eL~~~i~~~~~~~---~~~~~~~~~~~~~~~~~-~dg~as~ri~~~i~~~~~~~~~~~~ 726 (729)
T 3l7i_A 667 YTEPYGLAKELKNLDKVQ---QQYQEKIDAFYDRFCSV-DNGKASQYIGDLIHKDIKEQLEHHH 726 (729)
T ss_dssp ESSHHHHHHHHTTHHHHH---HHTHHHHHHHHHHHSTT-CCSCHHHHHHHHHHHHHHHHCC---
T ss_pred ECCHHHHHHHHhhhhccc---hhHHHHHHHHHHHhCCc-cCChHHHHHHHHHHhcCcCcccccc
Confidence 467788999998877532 26778888888887766 7788888877777777766555554
No 111
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=58.01 E-value=9.7 Score=33.11 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=33.5
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARF 50 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v 50 (492)
.++.||++...++.+=.. ...|++.|.+ +|++|.++.++.....+
T Consensus 17 l~~k~IllgvTGsiaa~k-~~~lv~~L~~~~g~~V~vv~T~~A~~fi 62 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALK-LPLLVSKLLDIPGLEVAVVTTERAKHFY 62 (206)
T ss_dssp CSSEEEEEEECSSGGGGT-HHHHHHHHC---CEEEEEEECTGGGGSS
T ss_pred cCCCEEEEEEeChHHHHH-HHHHHHHHhcccCCEEEEEECHhHHHHh
Confidence 345688888888777554 5899999999 89999999998755443
No 112
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=57.84 E-value=14 Score=33.72 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=25.2
Q ss_pred CCccEEEEec-CCCcCCHHH--HHHHHHHHHhCCCeEEEEe
Q 011142 5 ANQLHFVLFP-FLAQGHMIP--MIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 5 ~~~~~il~~~-~~~~GH~~p--~l~LA~~L~~rGH~Vt~~~ 42 (492)
++.||||++- +|-....+- .-.+++.|.+.||+|+++-
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5678887665 555444443 3346788999999999874
No 113
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=56.96 E-value=49 Score=29.35 Aligned_cols=21 Identities=5% Similarity=0.153 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEc
Q 011142 103 MLQEPVENFFAQLKPRPNCIISD 125 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D 125 (492)
.....+.+++++ .+||+|++-
T Consensus 84 ~~~~~l~~~ir~--~~PdvV~t~ 104 (242)
T 2ixd_A 84 EYIREIVKVIRT--YKPKLVFAP 104 (242)
T ss_dssp HHHHHHHHHHHH--HCCSEEEEE
T ss_pred HHHHHHHHHHHH--cCCCEEEEC
Confidence 345677788888 899999973
No 114
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=56.01 E-value=99 Score=26.65 Aligned_cols=107 Identities=8% Similarity=0.003 Sum_probs=55.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENL 85 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 85 (492)
+||+++.++..+- +.+|.+.+.+. +|+|..+.+............. .++.+..++. ..+
T Consensus 1 ~riaVl~SG~Gs~---L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~-----~gIp~~~~~~--------~~~--- 61 (209)
T 1meo_A 1 ARVAVLISGTGSN---LQALIDSTREPNSSAQIDIVISNKAAVAGLDKAER-----AGIPTRVINH--------KLY--- 61 (209)
T ss_dssp CEEEEEESSSCTT---HHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHH-----TTCCEEECCG--------GGS---
T ss_pred CeEEEEEECCchH---HHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHH-----cCCCEEEECc--------ccc---
Confidence 4788877665543 44455555554 7998877664433222222111 2455554321 100
Q ss_pred ccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 86 DMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
.. . ....+.+.+.+++ .+||+||+=.+. .-...+-..+...++-+.++
T Consensus 62 ---~~---r-------~~~~~~~~~~l~~--~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 62 ---KN---R-------VEFDSAIDLVLEE--FSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp ---SS---H-------HHHHHHHHHHHHH--TTCCEEEEESCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ---Cc---h-------hhhhHHHHHHHHh--cCCCEEEEcchhhhCCHHHHhhhcCCEEEEccC
Confidence 00 0 1112345667778 899999976553 33344455555566665444
No 115
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=55.89 E-value=9.8 Score=33.10 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=25.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
||||+++ ++.|.+- ..|++.|.++||+|+.+.-.
T Consensus 4 m~~ilIt--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLI--GASGFVG--SALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CCEEEEE--TCCHHHH--HHHHHHHHTTTCEEEEECSC
T ss_pred CCEEEEE--cCCchHH--HHHHHHHHHCCCEEEEEEcC
Confidence 5687776 3444443 47899999999999998764
No 116
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=55.70 E-value=9.5 Score=30.03 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCcEEEEcCCCc--cHHHHHH---HcCCCeEEEe
Q 011142 109 ENFFAQLKPRPNCIISDMCLP--YTAHIAG---KFNIPRITFH 146 (492)
Q Consensus 109 ~~ll~~~~~~pDlvI~D~~~~--~~~~~A~---~lgiP~v~~~ 146 (492)
.+++++ .+||+||.|...+ -|..+++ ..++|++.++
T Consensus 46 l~~~~~--~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 46 LDIARK--GQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHH--CCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 345666 7999999999776 4455554 4588877643
No 117
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=55.59 E-value=15 Score=29.27 Aligned_cols=37 Identities=8% Similarity=0.298 Sum_probs=26.7
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHHc-------CCCeEEEecch
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGKF-------NIPRITFHGTC 149 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 149 (492)
.+++ .+||+||.|...+ -|..+++.+ ++|++.++...
T Consensus 52 ~~~~--~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 52 MLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 3445 5899999999877 567666543 58888876554
No 118
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=55.08 E-value=53 Score=28.76 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEc
Q 011142 103 MLQEPVENFFAQLKPRPNCIISD 125 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D 125 (492)
.....+.+++++ .+||+|++-
T Consensus 82 ~~~~~l~~~ir~--~~P~~V~t~ 102 (227)
T 1uan_A 82 EQRLKLAQALRR--LRPRVVFAP 102 (227)
T ss_dssp HHHHHHHHHHHH--HCEEEEEEE
T ss_pred HHHHHHHHHHHH--hCCCEEEeC
Confidence 345677888888 899999974
No 119
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=55.02 E-value=13 Score=33.97 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=31.3
Q ss_pred CccEEEEecC--CCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPF--LAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~--~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+|+|++.+.. ++-|-..-...||..|+++|++|.++=...
T Consensus 2 ~M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 2 AETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp --CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4667666653 578999999999999999999999886544
No 120
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=54.46 E-value=22 Score=28.34 Aligned_cols=43 Identities=5% Similarity=-0.088 Sum_probs=30.8
Q ss_pred ccEEEEecC-C--CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011142 7 QLHFVLFPF-L--AQGHMIPMIDIARLLAQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 7 ~~~il~~~~-~--~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 49 (492)
+.|++|+.. + +.......+.+|...++.||+|+++-.......
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~~ 60 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPXL 60 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGG
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHHH
Confidence 456655553 3 355667888899999999999998887654433
No 121
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=54.07 E-value=26 Score=30.57 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=38.0
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARF 50 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v 50 (492)
+..||++.+.++-.|-....-++..|..+|++|+..+..--.+.+
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~i 135 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENV 135 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHH
Confidence 467999999999999999999999999999999998765433333
No 122
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=53.73 E-value=26 Score=34.39 Aligned_cols=43 Identities=5% Similarity=0.058 Sum_probs=35.7
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
-+++.-.|+.|-..-++.+|...+.+|..|.|++.+.....+.
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~ 241 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENI 241 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHH
Confidence 3666778899999999999999999999999999886554443
No 123
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=52.85 E-value=80 Score=30.87 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=34.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAAR 49 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 49 (492)
..|+++-.++.|-..-+..||..|+++|++|.++....++..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a 142 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG 142 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence 345666677899999999999999999999999998766543
No 124
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=52.82 E-value=30 Score=33.57 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCcEEEE--cCCCccHHHHHHHcCCCe
Q 011142 107 PVENFFAQLKPRPNCIIS--DMCLPYTAHIAGKFNIPR 142 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~--D~~~~~~~~~A~~lgiP~ 142 (492)
.+.++.++ .++|.|+. |.....+..+|+.+|+|.
T Consensus 66 ~~~~~~~~--~~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 66 VVRQTFVE--FPFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp HHHHHHHH--SCCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred HHHHhhhh--cCCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 34556667 79999985 333334566789999994
No 125
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=52.80 E-value=52 Score=28.60 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=56.0
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
..++||+++.++..+- +.+|.+.+.+ .+++|..+.+...... .+.... .++.++.++. ..+
T Consensus 10 ~~~~ri~vl~SG~gsn---l~all~~~~~~~~~eI~~Vis~~~a~~-~~~A~~-----~gIp~~~~~~--------~~~- 71 (215)
T 3da8_A 10 SAPARLVVLASGTGSL---LRSLLDAAVGDYPARVVAVGVDRECRA-AEIAAE-----ASVPVFTVRL--------ADH- 71 (215)
T ss_dssp CSSEEEEEEESSCCHH---HHHHHHHSSTTCSEEEEEEEESSCCHH-HHHHHH-----TTCCEEECCG--------GGS-
T ss_pred CCCcEEEEEEeCChHH---HHHHHHHHhccCCCeEEEEEeCCchHH-HHHHHH-----cCCCEEEeCc--------ccc-
Confidence 4578999887666443 3444444433 2458877766443221 111111 2566655321 000
Q ss_pred ccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
.. . ....+.+.+.+++ .+||+||+=.+. .-...+-..+.-.++-+.++
T Consensus 72 -----~~---r-------~~~d~~~~~~l~~--~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpS 120 (215)
T 3da8_A 72 -----PS---R-------DAWDVAITAATAA--HEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPA 120 (215)
T ss_dssp -----SS---H-------HHHHHHHHHHHHT--TCCSEEEEEECCSCCCHHHHHHHTTTEEEEESS
T ss_pred -----cc---h-------hhhhHHHHHHHHh--hCCCEEEEcCchhhCCHHHHhhccCCeEEeCcc
Confidence 00 0 1113456778888 899999975543 33334444454455654443
No 126
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=52.11 E-value=22 Score=27.07 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=25.8
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHHc-------CCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGKF-------NIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 149 (492)
+.+++ .+||+||.|...+ -+..+++.+ ++|++.++...
T Consensus 40 ~~l~~--~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 40 EKLSE--FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHTT--BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHh--cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 34555 6899999998765 455555543 58888876543
No 127
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=52.07 E-value=15 Score=33.06 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=30.2
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAA 48 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 48 (492)
+++||||+.-==+. |.--+..|++.|.+ +|+|+++.+...+.
T Consensus 9 ~~~m~ILlTNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~~~~S 50 (261)
T 3ty2_A 9 TPKLRLLLSNDDGV-YAKGLAILAKTLAD-LGEVDVVAPDRNRS 50 (261)
T ss_dssp --CCEEEEECSSCT-TCHHHHHHHHHHTT-TSEEEEEEESSCCT
T ss_pred CCCCeEEEEcCCCC-CCHHHHHHHHHHHh-cCCEEEEecCCCCc
Confidence 55799988863333 44558888999987 89999999876444
No 128
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=52.03 E-value=32 Score=28.95 Aligned_cols=44 Identities=14% Similarity=0.008 Sum_probs=28.6
Q ss_pred eeecCCch-hhcc-cCCCccccccccCchhhHHH---HhcCCCeeccCCc
Q 011142 344 VIWGWAPQ-VLIL-SHPSIGGFLTHCGWNSTIEG---VSAGLPLLTWPLF 388 (492)
Q Consensus 344 ~~~~~~pq-~~lL-~~~~~~~~ItHgG~~s~~Ea---l~~GvP~v~~P~~ 388 (492)
++.++.++ +.++ ..++ ..++--||.||+.|+ +.+++|++.+|.+
T Consensus 92 i~~~~~~~Rk~~m~~~sd-a~IvlpGg~GTL~E~~~al~~~kpV~~l~~~ 140 (176)
T 2iz6_A 92 IVTGLGSARDNINALSSN-VLVAVGMGPGTAAEVALALKAKKPVVLLGTQ 140 (176)
T ss_dssp EECCCCSSSCCCCGGGCS-EEEEESCCHHHHHHHHHHHHTTCCEEEESCC
T ss_pred EEcCCHHHHHHHHHHhCC-EEEEecCCccHHHHHHHHHHhCCcEEEEcCc
Confidence 44455554 3333 3344 345667888876655 7799999999983
No 129
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=51.79 E-value=43 Score=30.04 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCCcEEE-EcCCCc-cHHHHHHHcCCCeEEEecch
Q 011142 117 PRPNCII-SDMCLP-YTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 149 (492)
..||+|| .|+..- -+..=|..+|||+|.++-+.
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn 191 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARKLFIPVIALADTD 191 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTT
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 5799888 565433 56667899999999976553
No 130
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=51.73 E-value=22 Score=31.34 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=34.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+++|++.--|+-|-..-++++|..|+++|++|.++....
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 578888889999999999999999999999998877644
No 131
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=51.59 E-value=16 Score=33.03 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=25.7
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++|||+++ ++ |-+ -..|++.|.++||+|+.++-.
T Consensus 2 ~~~~ilVt--Ga-G~i--G~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 2 SLSKILIA--GC-GDL--GLELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCCEEEE--CC-SHH--HHHHHHHHHHTTCCEEEEECT
T ss_pred CCCcEEEE--CC-CHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 46788877 34 633 457899999999999999764
No 132
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=51.13 E-value=79 Score=27.45 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=57.3
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
+++||+++.++..+-+ .+|.+...+ .+++|..+.+........+.... .++.+..++. ..+
T Consensus 4 ~~~riavl~SG~Gsnl---~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~-----~gIp~~~~~~--------~~~-- 65 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNL---QAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQ-----ADIPTHIIPH--------EEF-- 65 (215)
T ss_dssp CCEEEEEEESSCCHHH---HHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHH-----TTCCEEECCG--------GGS--
T ss_pred CCcEEEEEEeCCcHHH---HHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHH-----cCCCEEEeCc--------ccc--
Confidence 3679988876655443 344445444 36888877763211111111111 2566655431 100
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
.. -....+.+.+.+++ .+||+||+=.+. .-...+-......++-+.++
T Consensus 66 ----~~----------r~~~d~~~~~~l~~--~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 66 ----PS----------RTDFESTLQKTIDH--YDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp ----SS----------HHHHHHHHHHHHHT--TCCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ----Cc----------hhHhHHHHHHHHHh--cCCCEEEEccchhhCCHHHHhhccCCeEEeCcc
Confidence 00 00113456778888 899999987653 33444555555566665444
No 133
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=50.63 E-value=17 Score=32.73 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=32.8
Q ss_pred CCccEEEEecCC---CcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFL---AQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+..||++|++.+ +.|-=.-.-.|+.-|..||++|+..=-
T Consensus 20 ~~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~ 61 (295)
T 2vo1_A 20 FQSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKI 61 (295)
T ss_dssp -CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeec
Confidence 567899999965 577778899999999999999999853
No 134
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=49.98 E-value=1.1e+02 Score=29.79 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=33.9
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARFN 51 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v~ 51 (492)
+++.-.|+.|-..-++.+|...+.. |..|.+++.+.....+.
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~ 245 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLT 245 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 5666678999999999999999874 89999999886554443
No 135
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=49.73 E-value=1.1e+02 Score=26.44 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCCc-chhhhhhHHHhhhhcCCceEEEEecCCccccCCCCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRG--VIITIVTTPV-NAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEG 81 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 81 (492)
|.++||+++.++..+- +.+|.+.+.+.+ ++|..+.+.. ...-.+ .... .++.+..++. ..
T Consensus 5 m~~~ri~vl~SG~gsn---l~all~~~~~~~l~~~I~~Visn~~~a~~l~-~A~~-----~gIp~~~~~~--------~~ 67 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSN---MEALIRAAQAPGFPAEIVAVFSDKAEAGGLA-KAEA-----AGIATQVFKR--------KD 67 (209)
T ss_dssp -CCEEEEEEESSCCHH---HHHHHHHHTSTTCSEEEEEEEESCTTCTHHH-HHHH-----TTCCEEECCG--------GG
T ss_pred CCCccEEEEEECCcHH---HHHHHHHHHcCCCCcEEEEEEECCcccHHHH-HHHH-----cCCCEEEeCc--------cc
Confidence 4467898887555433 556666666543 6888776632 111111 1111 2566655421 00
Q ss_pred CCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 82 CENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
+ .. -....+.+.+.+++ .+||+||+=.+. .-...+-..+.-.++-+.++
T Consensus 68 ~------~~----------r~~~d~~~~~~l~~--~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 68 F------AS----------KEAHEDAILAALDV--LKPDIICLAGYMRLLSGRFIAPYEGRILNIHPS 117 (209)
T ss_dssp S------SS----------HHHHHHHHHHHHHH--HCCSEEEESSCCSCCCHHHHGGGTTCEEEEESS
T ss_pred c------CC----------HHHHHHHHHHHHHh--cCCCEEEEeccccCcCHHHHhhccCCeEEECCc
Confidence 0 00 01112456677777 799999977653 33444455555556654443
No 136
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=49.70 E-value=13 Score=30.23 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=26.5
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+..||+++- .|++- ..+++.|.++||+|+++...
T Consensus 2 ~~~~vlI~G---~G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCG---HSILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEEC---CSHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEEC---CCHHH--HHHHHHHHHCCCCEEEEECC
Confidence 345788883 45554 68899999999999999874
No 137
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=49.63 E-value=20 Score=30.45 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=27.6
Q ss_pred CCccEEEEecCCCcCCHHHHH-HHHHHHHhCCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMI-DIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l-~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.||||+++-....|+..-+. .+++.|.+.|++|.++.-.
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 346798888766677766544 4577777889999887653
No 138
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=49.26 E-value=16 Score=31.13 Aligned_cols=38 Identities=11% Similarity=0.242 Sum_probs=27.4
Q ss_pred CccEEEEecCCCcCCHHHHH-HHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMI-DIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l-~LA~~L~~rGH~Vt~~~~~ 44 (492)
+||||+++... .|+..-+. .+++.|.+.|++|.++.-.
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~ 41 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVR 41 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 46799888877 88766544 3566677789999887643
No 139
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=49.14 E-value=16 Score=33.45 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=31.5
Q ss_pred ccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
..|+++++ -++.|-..-..+||..|++.|.+|.++-...
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 131 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDM 131 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 45666555 3568999999999999999999999997654
No 140
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=48.91 E-value=23 Score=27.02 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=27.6
Q ss_pred cEEEEecCCC---cCCHHHHHHHHHHHHhC-CC-eEEEEeCCcc
Q 011142 8 LHFVLFPFLA---QGHMIPMIDIARLLAQR-GV-IITIVTTPVN 46 (492)
Q Consensus 8 ~~il~~~~~~---~GH~~p~l~LA~~L~~r-GH-~Vt~~~~~~~ 46 (492)
+|++++-..+ .......+.+|..+++. || +|.++-..+.
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dg 45 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDA 45 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchH
Confidence 4665554332 34556679999999999 99 9998887543
No 141
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=48.74 E-value=21 Score=28.90 Aligned_cols=43 Identities=9% Similarity=0.039 Sum_probs=32.2
Q ss_pred EEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhh
Q 011142 9 HFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFN 51 (492)
Q Consensus 9 ~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~ 51 (492)
|++++. .+..-.+.+.+.+|...++.|++|+++.+......+.
T Consensus 9 kl~II~~sg~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~gv~~l~ 52 (144)
T 2qs7_A 9 KLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAIT 52 (144)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTB
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHcCCcEEEEEehHHHHHHh
Confidence 554444 4457778899999999999999999999865444443
No 142
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=48.43 E-value=16 Score=33.61 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.....+++|+++ ++.|.+- ..|++.|.++||+|+.++-.
T Consensus 1 M~~~~~~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 40 (321)
T 3vps_A 1 MQRNTLKHRILIT--GGAGFIG--GHLARALVASGEEVTVLDDL 40 (321)
T ss_dssp ------CCEEEEE--TTTSHHH--HHHHHHHHHTTCCEEEECCC
T ss_pred CCcccCCCeEEEE--CCCChHH--HHHHHHHHHCCCEEEEEecC
Confidence 4433446777776 4445443 37899999999999998753
No 143
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=48.27 E-value=11 Score=35.52 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=24.8
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|++|||+++-.+..| ..+|..|++.||+|+++..
T Consensus 2 m~~mki~iiG~G~~G-----~~~a~~L~~~g~~V~~~~r 35 (359)
T 1bg6_A 2 IESKTYAVLGLGNGG-----HAFAAYLALKGQSVLAWDI 35 (359)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCcCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEeC
Confidence 456899999554444 3578899999999998864
No 144
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=46.76 E-value=27 Score=31.10 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=27.9
Q ss_pred CccEEEEecCCCcC-----------CHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQG-----------HMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~G-----------H~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.|+||+++.....+ ...=+......|.+.|++|+++++.
T Consensus 2 ~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~ 51 (244)
T 3kkl_A 2 TPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSET 51 (244)
T ss_dssp -CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36789888765322 1234667788899999999999974
No 145
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=45.64 E-value=74 Score=29.83 Aligned_cols=101 Identities=11% Similarity=0.132 Sum_probs=59.1
Q ss_pred cEEEEecCCCcC--CH--HHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCC
Q 011142 8 LHFVLFPFLAQG--HM--IPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCE 83 (492)
Q Consensus 8 ~~il~~~~~~~G--H~--~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 83 (492)
.-|++.|..+.. .+ --+..|++.|.++|++|.+++++...+..++..... +-.... +..
T Consensus 186 ~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~-----~~~~~~---------l~g--- 248 (349)
T 3tov_A 186 ILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQM-----ETKPIV---------ATG--- 248 (349)
T ss_dssp CEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTC-----SSCCEE---------CTT---
T ss_pred CEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhc-----ccccEE---------eeC---
Confidence 346666654322 22 358899999999999999987776555444432211 000000 000
Q ss_pred ccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEecch
Q 011142 84 NLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 149 (492)
.....++..+++. -|++|+-. .+...+|..+|+|.|.++...
T Consensus 249 ------------------~~sl~e~~ali~~----a~~~i~~D--sG~~HlAaa~g~P~v~lfg~t 290 (349)
T 3tov_A 249 ------------------KFQLGPLAAAMNR----CNLLITND--SGPMHVGISQGVPIVALYGPS 290 (349)
T ss_dssp ------------------CCCHHHHHHHHHT----CSEEEEES--SHHHHHHHTTTCCEEEECSSC
T ss_pred ------------------CCCHHHHHHHHHh----CCEEEECC--CCHHHHHHhcCCCEEEEECCC
Confidence 0112234456654 68998742 456778999999999986543
No 146
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=45.45 E-value=24 Score=30.95 Aligned_cols=44 Identities=14% Similarity=-0.044 Sum_probs=33.0
Q ss_pred EEEecCCCcCCHHHHHHHHHH-HHhCCCeEEEEeCCcchhhhhhH
Q 011142 10 FVLFPFLAQGHMIPMIDIARL-LAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~-L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
+++.-.|+.|-..-++.+|.. +.+.|..|.+++.+...+.+...
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~ 77 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRRE 77 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHH
Confidence 566667889999999998866 45558899999987665555433
No 147
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=45.23 E-value=1.6e+02 Score=29.35 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHc-------CCCeEEE
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKF-------NIPRITF 145 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~l-------giP~v~~ 145 (492)
.+.+++++ .+||++|.+.. +..+|+.+ |||++.+
T Consensus 425 ~l~~~i~~--~~pDLiig~~~---~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 425 HFRSLMFT--RQPDFMIGNSY---GKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp HHHHHHHH--HCCSEEEECGG---GHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHhh--cCCCEEEECcc---hHHHHHHhhcccccCCCCeEEe
Confidence 34566776 68999999854 46677888 9999864
No 148
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=45.15 E-value=15 Score=32.38 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=31.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+|..-++-|=..-..+||..|+++|++|.++=..
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5788866777889999999999999999999998543
No 149
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=45.05 E-value=11 Score=34.72 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=25.3
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|....++|||.|+-.+..| ..+|+.|++.||+|+++..
T Consensus 1 M~~~~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr 38 (303)
T 3g0o_A 1 MSLTGTDFHVGIVGLGSMG-----MGAARSCLRAGLSTWGADL 38 (303)
T ss_dssp ------CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCCCeEEEECCCHHH-----HHHHHHHHHCCCeEEEEEC
Confidence 5555567899999554444 3789999999999998854
No 150
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=44.95 E-value=36 Score=26.39 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH-------cCCCeEEEecch
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK-------FNIPRITFHGTC 149 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 149 (492)
.+++ .+||+||+|...+ .+..+++. -.+|.+.++...
T Consensus 43 ~~~~--~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 43 QIYK--NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHh--CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 4455 6899999998765 45555443 267888776553
No 151
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=44.89 E-value=23 Score=30.35 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=24.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+++ ++.|.+- ..|+++|.++||+|+.++-.
T Consensus 1 MkvlVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGII--GATGRAG--SRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEE--cCCchhH--HHHHHHHHhCCCEEEEEEcC
Confidence 577666 4445443 47899999999999998764
No 152
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=44.60 E-value=28 Score=28.88 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=30.1
Q ss_pred cEEEEecCCC---cCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLA---QGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~---~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
-+|+++|.=+ .--..+...|++.|.++|.+|.|+.+|-
T Consensus 23 ~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 63 (184)
T 1d4o_A 23 NSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPV 63 (184)
T ss_dssp SEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4788887322 2245689999999999999999999974
No 153
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=44.48 E-value=40 Score=30.08 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=28.4
Q ss_pred ccEEEEecCCCc----------CC-HHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQ----------GH-MIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~----------GH-~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.||+++..... |- ..=+..-...|.+.|++|+++++.
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~ 57 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASET 57 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 578988876532 21 444777788999999999999974
No 154
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=44.02 E-value=1.4e+02 Score=26.29 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCcEEE-EcCCCc-cHHHHHHHcCCCeEEEecc
Q 011142 118 RPNCII-SDMCLP-YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 118 ~pDlvI-~D~~~~-~~~~~A~~lgiP~v~~~~~ 148 (492)
.||+|| .|+..- -+..=|..+|||+|.++-+
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDT 189 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDT 189 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecC
Confidence 599888 565432 4666688999999997554
No 155
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=44.00 E-value=63 Score=27.12 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=78.6
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCc
Q 011142 281 SVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSI 360 (492)
Q Consensus 281 ~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~ 360 (492)
+.|-|-+||.. +-....+....++.++..+-..+.+-.. .|+...+ |.-+.. -...++
T Consensus 22 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaHR--------~p~~l~~-----------~~~~a~-~~g~~V 79 (182)
T 1u11_A 22 PVVGIIMGSQS--DWETMRHADALLTELEIPHETLIVSAHR--------TPDRLAD-----------YARTAA-ERGLNV 79 (182)
T ss_dssp CSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTTT--------CHHHHHH-----------HHHHTT-TTTCCE
T ss_pred CEEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEEcccC--------CHHHHHH-----------HHHHHH-hCCCcE
Confidence 34667778766 4455666777778888776665544332 3432211 111100 011233
Q ss_pred cccccccCch----hhHHHHhcCCCeeccCCccc---cchhHHHHHHH--hcccee-ecccCCcccccccccccccCHHH
Q 011142 361 GGFLTHCGWN----STIEGVSAGLPLLTWPLFGD---QFMNEKLVVQI--LKIGVK-VGVESPMIWGEEQKIGVLMKRDD 430 (492)
Q Consensus 361 ~~~ItHgG~~----s~~Eal~~GvP~v~~P~~~D---Q~~na~rv~e~--~G~G~~-l~~~~~~~~~~~~~~~~~~~~~~ 430 (492)
+|.=+|.. ++.-++ .-+|+|.+|.... -.+--.-++ + .|+.+. +..+ +.+..+..-
T Consensus 80 --iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSiv-qmP~GvpVatV~I~----------~a~~~nAal 145 (182)
T 1u11_A 80 --IIAGAGGAAHLPGMCAAW-TRLPVLGVPVESRALKGMDSLLSIV-QMPGGVPVGTLAIG----------ASGAKNAAL 145 (182)
T ss_dssp --EEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHH-CCCTTSCCEECCSS----------HHHHHHHHH
T ss_pred --EEEecCchhhhHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCceEEEecC----------CccchHHHH
Confidence 77766643 444443 5799999998542 122222333 5 555532 1111 001356666
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhc
Q 011142 431 VRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQE 465 (492)
Q Consensus 431 l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (492)
++..|- -+.|+ ..+++.+.+++..++.+.+
T Consensus 146 lAaqIl-a~~d~----~l~~kL~~~r~~~~~~v~~ 175 (182)
T 1u11_A 146 LAASIL-ALYNP----ALAARLETWRALQTASVPN 175 (182)
T ss_dssp HHHHHH-GGGCH----HHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHH-ccCCH----HHHHHHHHHHHHHHHHHHH
Confidence 666665 34455 8999999998888776544
No 156
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=43.47 E-value=44 Score=25.63 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=31.0
Q ss_pred CCCccEEEEecCCCcCCHHH-HHHHHHHHHhCCCeEEEEe
Q 011142 4 QANQLHFVLFPFLAQGHMIP-MIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p-~l~LA~~L~~rGH~Vt~~~ 42 (492)
..+++||+++|..+.|.-.- ...|-+.+.++|.++.+-.
T Consensus 18 ~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~ 57 (113)
T 1tvm_A 18 QGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 57 (113)
T ss_dssp SCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45678999999999999885 6777788888999865543
No 157
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=43.23 E-value=30 Score=27.26 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=24.6
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHHc---------CCCeEEEecc
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGKF---------NIPRITFHGT 148 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l---------giP~v~~~~~ 148 (492)
+.++. .+||+||.|...+ -+..+++.+ .+|.+.++..
T Consensus 52 ~~~~~--~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 52 DAMAE--EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 34455 6899999998765 455555543 3788877654
No 158
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=43.13 E-value=2.4e+02 Score=28.15 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHc-------CCCeEEE
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKF-------NIPRITF 145 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~l-------giP~v~~ 145 (492)
.+.+++++ .+||+||.... +..+|+.+ |||++.+
T Consensus 429 ~l~~~i~~--~~pDLlig~s~---~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 429 HLRSLVFT--DKPDFMIGNSY---GKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HHHHHHHH--TCCSEEEECTT---HHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHh--cCCCEEEECcc---HHHHHHHhhcccccCCCceEEe
Confidence 45567777 79999999965 33456666 9999974
No 159
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=42.72 E-value=20 Score=32.90 Aligned_cols=38 Identities=5% Similarity=-0.047 Sum_probs=28.3
Q ss_pred ccEEEEecCCCcC---CHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQG---HMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~G---H~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
||||+++..+... .......++++|.++||+|.++.+.
T Consensus 1 mm~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CCEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGG
T ss_pred CceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchh
Confidence 3699999876421 1234577999999999999988763
No 160
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=42.59 E-value=31 Score=28.58 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.2
Q ss_pred cEEEEecCCC---cCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLA---QGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~---~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
-+|+++|.=+ .--..+...|++.|.++|.+|.|+.+|-
T Consensus 31 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 71 (186)
T 2bru_C 31 HSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 71 (186)
T ss_dssp SEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSS
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4788887322 2245689999999999999999999974
No 161
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=42.52 E-value=14 Score=34.25 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|..+..++||.|+-.+..| ..+|+.|+++||+|+++..
T Consensus 3 m~~~~~~~~IgiIG~G~mG-----~~~A~~l~~~G~~V~~~dr 40 (306)
T 3l6d_A 3 LSDESFEFDVSVIGLGAMG-----TIMAQVLLKQGKRVAIWNR 40 (306)
T ss_dssp CCCCCCSCSEEEECCSHHH-----HHHHHHHHHTTCCEEEECS
T ss_pred CCcccCCCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 3445557899999544444 3789999999999988743
No 162
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=42.31 E-value=40 Score=25.40 Aligned_cols=38 Identities=21% Similarity=0.477 Sum_probs=25.0
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHH----HcCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAG----KFNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~----~lgiP~v~~~~~~ 149 (492)
+.+++ .+||+||.|...+ .+..+++ ..++|.+.++...
T Consensus 40 ~~~~~--~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 40 EMVEE--LQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp HHHHT--TCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred HHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 34555 6899999998765 3444443 3478888776543
No 163
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=42.24 E-value=27 Score=30.07 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=24.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+++ ++.|.+- ..|+++|.++||+|+.++-.
T Consensus 1 MkilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVL--GATGRAG--SAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE--cCCCHHH--HHHHHHHHHCCCEEEEEEec
Confidence 466665 4445443 58899999999999998764
No 164
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=41.88 E-value=14 Score=34.74 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=26.8
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++|||+++-.+..| ..+|..|++.||+|+++...
T Consensus 2 ~~mkI~IiGaG~~G-----~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 2 SLTRICIVGAGAVG-----GYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCCEEEESCCHHH-----HHHHHHHHHTTCCEEEECCH
T ss_pred CCCEEEEECcCHHH-----HHHHHHHHHCCCEEEEEECh
Confidence 35799999655555 36789999999999999863
No 165
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=41.68 E-value=16 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
||||+++-.+..| ..+|..|+++||+|+++..
T Consensus 3 ~m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 3 AMKIAIAGAGAMG-----SRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEECcCHHH-----HHHHHHHHhCCCcEEEEEC
Confidence 6799998554444 3678999999999999865
No 166
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=41.65 E-value=27 Score=30.91 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=30.6
Q ss_pred ccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|+|++.+. -++-|-..-...||..|+++|++|.++=...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 45665554 3468899999999999999999999986543
No 167
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=41.65 E-value=1.4e+02 Score=29.58 Aligned_cols=41 Identities=5% Similarity=-0.135 Sum_probs=34.1
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhh
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTPVNAARF 50 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~v 50 (492)
+++.-.|+.|=..-++.+|..++.+ |..|.+++.+.....+
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l 286 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEET 286 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHH
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 4566678899999999999999987 9999999998765444
No 168
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=41.54 E-value=1.6e+02 Score=24.75 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=77.2
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCC
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPS 359 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~ 359 (492)
-|.|-|-+||.. +-....+....++.++..+-..+.+-.. .|+...+ |+-+.. -...+
T Consensus 13 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaHR--------~p~~l~~-----------~~~~a~-~~g~~ 70 (183)
T 1o4v_A 13 VPRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVSAHR--------TPDRMFE-----------YAKNAE-ERGIE 70 (183)
T ss_dssp -CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECCTTT--------CHHHHHH-----------HHHHTT-TTTCC
T ss_pred CCeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEcccC--------CHHHHHH-----------HHHHHH-hCCCc
Confidence 467888888876 4445666777777888776665544332 3432211 111100 01123
Q ss_pred ccccccccCch----hhHHHHhcCCCeeccCCccc--cchhH-HHHHHHh--cccee-ecccCCcccccccccccccCHH
Q 011142 360 IGGFLTHCGWN----STIEGVSAGLPLLTWPLFGD--QFMNE-KLVVQIL--KIGVK-VGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 360 ~~~~ItHgG~~----s~~Eal~~GvP~v~~P~~~D--Q~~na-~rv~e~~--G~G~~-l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
+ +|.=+|.. ++.-++ .-+|+|.+|.... ....+ .-++ +. |+.+. +..+ +..++.
T Consensus 71 V--iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSiv-qmP~GvpVatV~Id------------~~~nAa 134 (183)
T 1o4v_A 71 V--IIAGAGGAAHLPGMVASI-THLPVIGVPVKTSTLNGLDSLFSIV-QMPGGVPVATVAIN------------NAKNAG 134 (183)
T ss_dssp E--EEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHH-TCCTTCCCEECCTT------------CHHHHH
T ss_pred E--EEEecCcccccHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCeeEEEecC------------CchHHH
Confidence 3 77766643 444443 6789999997542 22222 2233 55 54322 1121 236677
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhc
Q 011142 430 DVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQE 465 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (492)
.++..|-. +.|+ ..+++.+.+++...+.+.+
T Consensus 135 ~lAaqIla-~~d~----~l~~kL~~~r~~~~~~v~~ 165 (183)
T 1o4v_A 135 ILAASILG-IKYP----EIARKVKEYKERMKREVLE 165 (183)
T ss_dssp HHHHHHHH-TTCH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCH----HHHHHHHHHHHHHHHHHHH
Confidence 77766653 3455 7778877777776655433
No 169
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=41.48 E-value=53 Score=28.58 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=61.1
Q ss_pred ccEEEEecCCCcCCHHH----HHHHHHHHHhC-CCeEEEEeCC-cchhhhhhHHHhhhhcCCceEEEEecCCccccCCCC
Q 011142 7 QLHFVLFPFLAQGHMIP----MIDIARLLAQR-GVIITIVTTP-VNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPE 80 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p----~l~LA~~L~~r-GH~Vt~~~~~-~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 80 (492)
|.+|+++.-...|.+.+ ++.-|++|++. |-+|+.++-. ...+..+.. ..+ |. -+.+.+..+
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~-~~~---Ga-d~v~~v~~~-------- 69 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQI-LPY---GV-DKLHVFDAE-------- 69 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHH-GGG---TC-SEEEEEECG--------
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHH-Hhc---CC-CEEEEecCc--------
Confidence 45688888655666655 57778888875 7777766532 222222222 111 11 122333211
Q ss_pred CCCccccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCc---cHHHHHHHcCCCeEEE
Q 011142 81 GCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLP---YTAHIAGKFNIPRITF 145 (492)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~---~~~~~A~~lgiP~v~~ 145 (492)
.+..+ . . ......+.+++++ .+||+|++-.... .+..+|..+|+|.+.-
T Consensus 70 ~~~~~------~-~-------~~~a~~l~~~i~~--~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sd 121 (217)
T 3ih5_A 70 GLYPY------T-S-------LPHTSILVNLFKE--EQPQICLMGATVIGRDLGPRVSSALTSGLTAD 121 (217)
T ss_dssp GGSSC------C-H-------HHHHHHHHHHHHH--HCCSEEEEECSHHHHHHHHHHHHHTTCCCBCS
T ss_pred ccccC------C-H-------HHHHHHHHHHHHh--cCCCEEEEeCCcchhhHHHHHHHHhCCCccce
Confidence 00000 0 0 1123344556777 6899999887654 4567899999999964
No 170
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=41.16 E-value=29 Score=27.06 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=24.7
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.|||+++ +.|.+-. .+|+.|.++||+|+++...
T Consensus 4 ~m~i~Ii---G~G~iG~--~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIA---GIGRVGY--TLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEE---CCSHHHH--HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE---CCCHHHH--HHHHHHHhCCCeEEEEECC
Confidence 4788888 3365543 6789999999999998753
No 171
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=40.82 E-value=31 Score=30.10 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=30.1
Q ss_pred cEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+|++.+. -++.|-..-...||..|+++|++|.++-...
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 4554444 3468999999999999999999999986543
No 172
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=40.78 E-value=13 Score=29.55 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=25.3
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+|+||+++-. |.+ -..+|+.|.++||+|+++...
T Consensus 5 ~~~~v~I~G~---G~i--G~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVIGS---EAA--GVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp -CCSEEEECC---SHH--HHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECC---CHH--HHHHHHHHHHCCCeEEEEECC
Confidence 3567888843 543 457899999999999988764
No 173
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=40.68 E-value=12 Score=35.70 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=26.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+|+||.|+-.+..| ..+|..|++.||+|+++...
T Consensus 13 m~M~kI~iIG~G~mG-----~~la~~L~~~G~~V~~~~r~ 47 (366)
T 1evy_A 13 LYLNKAVVFGSGAFG-----TALAMVLSKKCREVCVWHMN 47 (366)
T ss_dssp CCEEEEEEECCSHHH-----HHHHHHHTTTEEEEEEECSC
T ss_pred hccCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 444499998655555 46899999999999988653
No 174
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=40.54 E-value=8 Score=34.15 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=24.2
Q ss_pred CCCcEEEEcCCCccHHHHHHHcCCCeEEEec
Q 011142 117 PRPNCIISDMCLPYTAHIAGKFNIPRITFHG 147 (492)
Q Consensus 117 ~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 147 (492)
.+.|+||.|.. ...+|+++|+|.+.+.+
T Consensus 153 ~G~~vVVG~~~---~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 153 NGTEAVVGAGL---ITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp TTCCEEEESHH---HHHHHHHTTSEEEESSC
T ss_pred CCCCEEECCHH---HHHHHHHcCCcEEEECC
Confidence 59999999944 68899999999999874
No 175
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=40.25 E-value=38 Score=26.59 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=26.6
Q ss_pred cEEEEec-CCCcC--CHHHHHHHHHHHHhCCCeE-EEEeCCc
Q 011142 8 LHFVLFP-FLAQG--HMIPMIDIARLLAQRGVII-TIVTTPV 45 (492)
Q Consensus 8 ~~il~~~-~~~~G--H~~p~l~LA~~L~~rGH~V-t~~~~~~ 45 (492)
||++++- .+.+| .....+.+|..+.+.||+| .++-..+
T Consensus 1 mk~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~d 42 (130)
T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHD 42 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEech
Confidence 3554444 33354 4556788999999999999 8887654
No 176
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=40.14 E-value=1.2e+02 Score=24.94 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 011142 24 MIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 24 ~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
...+.+.|+++|+.+.++|...
T Consensus 73 ~~e~L~~L~~~G~~v~ivT~~~ 94 (187)
T 2wm8_A 73 VPEVLKRLQSLGVPGAAASRTS 94 (187)
T ss_dssp HHHHHHHHHHHTCCEEEEECCS
T ss_pred HHHHHHHHHHCCceEEEEeCCC
Confidence 6778899999999999999765
No 177
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=39.24 E-value=31 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=26.5
Q ss_pred ccEEEEecCCCcCCHHH-HHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIP-MIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p-~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+||+++-....|+..- ...|++.|.++|++|.++.-.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 45776666556777654 445678888889999987654
No 178
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=39.07 E-value=43 Score=29.51 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCc-------cHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLP-------YTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~v~~ 145 (492)
+.+.+++++...+||+|++|..-. -|..+.-.+|+|.|-+
T Consensus 95 P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGV 141 (237)
T 3goc_A 95 PTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGV 141 (237)
T ss_dssp HHHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEee
Confidence 444455555446899999998632 3456778899999976
No 179
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=38.99 E-value=94 Score=27.13 Aligned_cols=153 Identities=9% Similarity=-0.002 Sum_probs=75.1
Q ss_pred ccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCch
Q 011142 272 KWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQ 351 (492)
Q Consensus 272 ~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq 351 (492)
-|++-. ++.++.|..|... ..-+..|.+.+..+.+... ... +.+.......++......-+
T Consensus 25 ifl~L~-gk~VLVVGgG~va-------~~ka~~Ll~~GA~VtVvap-~~~----------~~l~~l~~~~~i~~i~~~~~ 85 (223)
T 3dfz_A 25 VMLDLK-GRSVLVVGGGTIA-------TRRIKGFLQEGAAITVVAP-TVS----------AEINEWEAKGQLRVKRKKVG 85 (223)
T ss_dssp EEECCT-TCCEEEECCSHHH-------HHHHHHHGGGCCCEEEECS-SCC----------HHHHHHHHTTSCEEECSCCC
T ss_pred cEEEcC-CCEEEEECCCHHH-------HHHHHHHHHCCCEEEEECC-CCC----------HHHHHHHHcCCcEEEECCCC
Confidence 455543 5668888766433 2344555566777776643 221 12222112234443332223
Q ss_pred hhcccCCCccccccccCchhhHHHHh----cCCCeeccCCccccchhH-----HHHHHHhccceeecccCCccccccccc
Q 011142 352 VLILSHPSIGGFLTHCGWNSTIEGVS----AGLPLLTWPLFGDQFMNE-----KLVVQILKIGVKVGVESPMIWGEEQKI 422 (492)
Q Consensus 352 ~~lL~~~~~~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~DQ~~na-----~rv~e~~G~G~~l~~~~~~~~~~~~~~ 422 (492)
...|..+++ +|.--|.-.+.+.++ .|+|+-+ .|.+..+ +.+ ++-++-+.+..+ |.
T Consensus 86 ~~dL~~adL--VIaAT~d~~~N~~I~~~ak~gi~VNv----vD~p~~~~f~~Paiv-~rg~l~iaIST~-----G~---- 149 (223)
T 3dfz_A 86 EEDLLNVFF--IVVATNDQAVNKFVKQHIKNDQLVNM----ASSFSDGNIQIPAQF-SRGRLSLAISTD-----GA---- 149 (223)
T ss_dssp GGGSSSCSE--EEECCCCTHHHHHHHHHSCTTCEEEC---------CCSEECCEEE-EETTEEEEEECT-----TS----
T ss_pred HhHhCCCCE--EEECCCCHHHHHHHHHHHhCCCEEEE----eCCcccCeEEEeeEE-EeCCEEEEEECC-----CC----
Confidence 445667777 887777655555444 3555322 2333222 222 122233333332 11
Q ss_pred ccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHH
Q 011142 423 GVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMA 462 (492)
Q Consensus 423 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~ 462 (492)
.-.-+..|++.|.+++ +.....+-+.+.++++.+++.
T Consensus 150 -sP~la~~iR~~ie~~l--p~~~~~~~~~~~~~R~~vk~~ 186 (223)
T 3dfz_A 150 -SPLLTKRIKEDLSSNY--DESYTQYTQFLYECRVLIHRL 186 (223)
T ss_dssp -CHHHHHHHHHHHHHHS--CTHHHHHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHH
Confidence 1123456788888777 334456777788888887754
No 180
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=38.86 E-value=43 Score=29.38 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCcc-------HHHHHHHcCCCeEEEec
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPY-------TAHIAGKFNIPRITFHG 147 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~-------~~~~A~~lgiP~v~~~~ 147 (492)
+.+.++++....+||+|++|..-.+ |..+.-.+|+|+|.+.=
T Consensus 91 P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK 139 (225)
T 2w36_A 91 PLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAK 139 (225)
T ss_dssp HHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEES
T ss_pred HHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEe
Confidence 3344555554468999999996543 34566778999998633
No 181
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=38.53 E-value=17 Score=31.75 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=26.2
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+||||.|+-.+..| ..+|+.|++.||+|+++...
T Consensus 21 m~mmkI~IIG~G~mG-----~~la~~l~~~g~~V~~v~~r 55 (220)
T 4huj_A 21 QSMTTYAIIGAGAIG-----SALAERFTAAQIPAIIANSR 55 (220)
T ss_dssp GGSCCEEEEECHHHH-----HHHHHHHHHTTCCEEEECTT
T ss_pred hcCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 557899998544443 47899999999999985543
No 182
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=38.21 E-value=34 Score=27.66 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=26.0
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
...++|+++- .|.+- ..+|+.|.++|++|+++...
T Consensus 17 ~~~~~v~IiG---~G~iG--~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 17 QKSKYIVIFG---CGRLG--SLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCCEEEEEC---CSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred cCCCcEEEEC---CCHHH--HHHHHHHHhCCCeEEEEECC
Confidence 3457888884 35443 45789999999999998764
No 183
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=37.74 E-value=56 Score=28.87 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=28.1
Q ss_pred ccEEEEecCCCcC-----------CHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQG-----------HMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~G-----------H~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|+||+++.....+ ...=+....+.|.+.|++|+++++..
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g 52 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETG 52 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 5689888754221 33456677788899999999999753
No 184
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=37.61 E-value=53 Score=25.39 Aligned_cols=36 Identities=11% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHHc-------CCCeEEEecc
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGKF-------NIPRITFHGT 148 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~l-------giP~v~~~~~ 148 (492)
.++. .+||+||.|...+ .+..+++.+ .+|.+.++..
T Consensus 42 ~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 42 ALNA--TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHhc--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 4455 6899999998664 345444432 5788876544
No 185
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=37.16 E-value=31 Score=32.14 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.9
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+||||+|+-.+.++ ....+.|.++||+|..+.+.+
T Consensus 3 ~mmrIvf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~p 37 (317)
T 3rfo_A 3 AMIKVVFMGTPDFS-----VPVLRRLIEDGYDVIGVVTQP 37 (317)
T ss_dssp TTSEEEEECCSTTH-----HHHHHHHHHTTCEEEEEECCC
T ss_pred CceEEEEEeCCHHH-----HHHHHHHHHCCCcEEEEEeCC
Confidence 58999999777654 345677888899999887754
No 186
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=36.65 E-value=37 Score=31.19 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=23.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+|+++ ++.|.+- ..|+++|.++||+|+.++-..
T Consensus 13 ~ilVt--GatG~iG--~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 13 KILIF--GGTGYIG--NHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CEEEE--TTTSTTH--HHHHHHHHHTTCCEEEEECTT
T ss_pred eEEEE--CCCchHH--HHHHHHHHHCCCcEEEEECCC
Confidence 56655 4445443 478899999999999887643
No 187
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=36.62 E-value=2.1e+02 Score=24.77 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=24.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.++++..+.| -=.++|++|+++|++|.+....
T Consensus 8 k~vlITGas~g---IG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T 3icc_A 8 KVALVTGASRG---IGRAIAKRLANDGALVAIHYGN 40 (255)
T ss_dssp CEEEETTCSSH---HHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCCeEEEEeCC
Confidence 57777755433 2468999999999999886543
No 188
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=36.35 E-value=35 Score=31.13 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=24.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+++|+++ ++.|.+- ..|+++|.++||+|+.++-.
T Consensus 4 ~~~ilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 37 (313)
T 1qyd_A 4 KSRVLIV--GGTGYIG--KRIVNASISLGHPTYVLFRP 37 (313)
T ss_dssp CCCEEEE--STTSTTH--HHHHHHHHHTTCCEEEECCS
T ss_pred CCEEEEE--cCCcHHH--HHHHHHHHhCCCcEEEEECC
Confidence 5677776 4445543 46789999999999988754
No 189
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=36.33 E-value=59 Score=33.03 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=39.7
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhH
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGI 53 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~ 53 (492)
+..||++.+.++-.|-....-++..|..+|++|+.++...-.+.+...
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~a 144 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRT 144 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 367999999999999999999999999999999998775444444333
No 190
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=35.78 E-value=42 Score=25.49 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=28.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
.|||+++|..+.|+-.-.-.|-+.+.++|.++.+-.
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~ 39 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEA 39 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEE
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEE
Confidence 378999999998888666677788888898765543
No 191
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=35.52 E-value=47 Score=29.15 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=24.6
Q ss_pred CCccccccccCchhhHHHHhcCCCeeccCCcc
Q 011142 358 PSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFG 389 (492)
Q Consensus 358 ~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~ 389 (492)
+++ +|+.||...+.... .++|+|-++..+
T Consensus 64 ~dV--IISRGgta~~Lr~~-~~iPVV~I~vs~ 92 (225)
T 2pju_A 64 CDA--IIAAGSNGAYLKSR-LSVPVILIKPSG 92 (225)
T ss_dssp CSE--EEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CeE--EEeCChHHHHHHhh-CCCCEEEecCCH
Confidence 566 99999999988875 589999999765
No 192
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=35.50 E-value=1.1e+02 Score=29.97 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=34.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhh
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQ-RGVIITIVTTPVNAARFN 51 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~v~ 51 (492)
-+++.-.|+.|=..-++.+|..++. .|..|.+++.+.....+.
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~ 248 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLV 248 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 3566777889999999999999987 599999999876544433
No 193
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=35.26 E-value=55 Score=30.14 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=26.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|||+++-.++.|- .+|..|++.||+|+++....
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGL-----YYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHH-----HHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHH-----HHHHHHHHCCCeEEEEEcCc
Confidence 6899997777664 56899999999999998754
No 194
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=35.23 E-value=31 Score=32.54 Aligned_cols=36 Identities=3% Similarity=0.037 Sum_probs=25.8
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR-GVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~ 44 (492)
++||||+++ ++.|.+- ..|+++|.++ ||+|+.+.-.
T Consensus 22 m~~~~vlVt--GatG~iG--~~l~~~L~~~~g~~V~~~~r~ 58 (372)
T 3slg_A 22 MKAKKVLIL--GVNGFIG--HHLSKRILETTDWEVFGMDMQ 58 (372)
T ss_dssp -CCCEEEEE--SCSSHHH--HHHHHHHHHHSSCEEEEEESC
T ss_pred cCCCEEEEE--CCCChHH--HHHHHHHHhCCCCEEEEEeCC
Confidence 346787776 4455544 4788999998 9999999754
No 195
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=35.16 E-value=29 Score=31.82 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=26.0
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+|+||.|+-.+..|. .+|+.|+++||+|+++..
T Consensus 2 ~m~~I~iiG~G~mG~-----~~a~~l~~~G~~V~~~d~ 34 (302)
T 2h78_A 2 HMKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDL 34 (302)
T ss_dssp -CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEEeecHHHH-----HHHHHHHhCCCeEEEEcC
Confidence 478999996665554 778999999999998854
No 196
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=34.80 E-value=41 Score=31.15 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=23.8
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.+|+|++. ++.|-+- ..|++.|+++||+|+.+.-
T Consensus 4 ~~~~vlVT--GatG~iG--~~l~~~L~~~G~~V~~~~r 37 (341)
T 3enk_A 4 TKGTILVT--GGAGYIG--SHTAVELLAHGYDVVIADN 37 (341)
T ss_dssp SSCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEECC
T ss_pred CCcEEEEe--cCCcHHH--HHHHHHHHHCCCcEEEEec
Confidence 34566655 3444333 4789999999999998864
No 197
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=34.54 E-value=62 Score=24.38 Aligned_cols=38 Identities=24% Similarity=0.485 Sum_probs=24.6
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
+.++. .+||+||.|...+ .+..+++. -++|.+.++...
T Consensus 41 ~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 41 AFAPD--VRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp HHGGG--CCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred HHHhc--CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 34455 6899999997654 34444433 367888776553
No 198
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=34.35 E-value=49 Score=27.73 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=24.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+|+++ ++.|-+ =..|+++|.++||+|+.++-.
T Consensus 4 ~~ilVt--GatG~i--G~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 4 KKIAIF--GATGQT--GLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CEEEEE--STTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE--cCCcHH--HHHHHHHHHHCCCeEEEEEeC
Confidence 577766 344433 357899999999999998754
No 199
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=34.26 E-value=43 Score=29.36 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=22.7
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+.+.+.+ .++++.. .|- -=..+|+.|+++|++|+++.-
T Consensus 1 M~~~~~~k-~vlVTGa-s~g--IG~~ia~~l~~~G~~V~~~~r 39 (241)
T 1dhr_A 1 MAASGEAR-RVLVYGG-RGA--LGSRCVQAFRARNWWVASIDV 39 (241)
T ss_dssp -----CCC-EEEEETT-TSH--HHHHHHHHHHTTTCEEEEEES
T ss_pred CCccCCCC-EEEEECC-CcH--HHHHHHHHHHhCCCEEEEEeC
Confidence 55544444 4455533 332 235889999999999998764
No 200
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=34.08 E-value=38 Score=28.98 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=27.2
Q ss_pred CCCccccccccCchhhHHHHhcCCCeeccCCccccchhH
Q 011142 357 HPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNE 395 (492)
Q Consensus 357 ~~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na 395 (492)
.+++ +|+.||...+.... .++|+|-+|..+--...|
T Consensus 51 ~~dV--IISRGgta~~lr~~-~~iPVV~I~~s~~Dil~a 86 (196)
T 2q5c_A 51 EVDA--IISRGATSDYIKKS-VSIPSISIKVTRFDTMRA 86 (196)
T ss_dssp TCSE--EEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHH
T ss_pred CCeE--EEECChHHHHHHHh-CCCCEEEEcCCHhHHHHH
Confidence 3455 99999999988875 689999999876333333
No 201
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=33.93 E-value=51 Score=28.19 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=27.6
Q ss_pred CCccEEEEecCCCcCCHHHHH-HHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMI-DIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l-~LA~~L~~rGH~Vt~~~~ 43 (492)
++||||+++-....|+..-+. .+++.|.+.|++|.++--
T Consensus 4 ~~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l 43 (211)
T 1ydg_A 4 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKV 43 (211)
T ss_dssp -CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 357899888765577766544 457777778999887764
No 202
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=33.79 E-value=54 Score=25.26 Aligned_cols=37 Identities=5% Similarity=-0.086 Sum_probs=26.6
Q ss_pred EEEEec-CCCcCCH--HHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 9 HFVLFP-FLAQGHM--IPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 9 ~il~~~-~~~~GH~--~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|++++- .+-+|+. .-.+.+|..+...||+|.++-..+
T Consensus 3 k~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vff~~D 42 (119)
T 2d1p_B 3 RIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIAD 42 (119)
T ss_dssp CEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGG
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEehH
Confidence 454444 4446765 557888999999999999887654
No 203
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=33.70 E-value=91 Score=32.20 Aligned_cols=40 Identities=20% Similarity=0.098 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCcEEEEcCC-CccHHHHHHHcCCCeEEEecch
Q 011142 108 VENFFAQLKPRPNCIISDMC-LPYTAHIAGKFNIPRITFHGTC 149 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~-~~~~~~~A~~lgiP~v~~~~~~ 149 (492)
+.+.+++ .+||+||+=.+ ..-...+-......++-+.++.
T Consensus 67 ~~~~l~~--~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~sl 107 (660)
T 1z7e_A 67 WVERIAQ--LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL 107 (660)
T ss_dssp HHHHHHH--HCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSS
T ss_pred HHHHHHh--cCCCEEEEcCcccccCHHHHhcCCCCeEEecCCc
Confidence 4556667 69999997654 3344445566666778777774
No 204
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=33.42 E-value=72 Score=27.01 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=43.4
Q ss_pred chhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhccChh---hHHHHHHHHHHHHHHHH----HHh
Q 011142 392 FMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKE---GEERRNRAVKLGQMANM----AVQ 464 (492)
Q Consensus 392 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~~~~---~~~~~~~a~~l~~~~~~----~~~ 464 (492)
.+.+..- +..|+|+. +|+|+|.++|.++++.-.. .+.|+ +.-.+-..+++ -|+
T Consensus 102 id~~~Fe-~~cGVGV~------------------VT~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~~p~LkWA 161 (187)
T 3tl4_X 102 STKMGMN-ENSGVGIE------------------ITEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKNLKELKWA 161 (187)
T ss_dssp CCHHHHH-HTTTTTCC------------------CCHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHTCGGGTTS
T ss_pred CCHHHHH-HHCCCCeE------------------eCHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhcccCCCCC
Confidence 3444444 68999973 6888999999999853211 12344 55555544443 366
Q ss_pred cCCchHHHHHHHHHHH
Q 011142 465 EGGSSHLNVTLVIQDI 480 (492)
Q Consensus 465 ~gg~~~~~~~~~~~~~ 480 (492)
+|-.....+++-+-++
T Consensus 162 d~~~vK~~vD~~~l~l 177 (187)
T 3tl4_X 162 DPRSFKPIIDQEVLKL 177 (187)
T ss_dssp CTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7788888888655544
No 205
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=33.17 E-value=1.1e+02 Score=27.09 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=24.2
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++++..+.| -=.++|++|+++|++|.++..
T Consensus 12 k~vlVTGas~G---IG~aia~~la~~G~~V~~~~r 43 (262)
T 3ksu_A 12 KVIVIAGGIKN---LGALTAKTFALESVNLVLHYH 43 (262)
T ss_dssp CEEEEETCSSH---HHHHHHHHHTTSSCEEEEEES
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 67777755543 236899999999999998764
No 206
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=33.13 E-value=76 Score=24.03 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHH---H----cCCCeEEEecc
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAG---K----FNIPRITFHGT 148 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~---~----lgiP~v~~~~~ 148 (492)
+.+++ .+||+||.|.... .+..+++ . -++|++.++..
T Consensus 41 ~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 41 QQALA--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 34555 6899999998654 3443332 2 26788876554
No 207
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=33.12 E-value=52 Score=30.84 Aligned_cols=36 Identities=6% Similarity=0.055 Sum_probs=25.3
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHh--CCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQ--RGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~--rGH~Vt~~~~~ 44 (492)
+++++|++. ++.|-+- ..|+++|.+ +||+|+.+.-.
T Consensus 8 ~~~~~vlVT--GatG~IG--~~l~~~L~~~~~g~~V~~~~r~ 45 (362)
T 3sxp_A 8 LENQTILIT--GGAGFVG--SNLAFHFQENHPKAKVVVLDKF 45 (362)
T ss_dssp CTTCEEEEE--TTTSHHH--HHHHHHHHHHCTTSEEEEEECC
T ss_pred cCCCEEEEE--CCCCHHH--HHHHHHHHhhCCCCeEEEEECC
Confidence 445777766 3344333 378899999 99999998753
No 208
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=33.03 E-value=1.3e+02 Score=28.46 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=32.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
++++-.++.|-..-++.+|..+++.|..|.|+..+...
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 55666778999999999999999999999999987643
No 209
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=32.92 E-value=43 Score=27.62 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=30.4
Q ss_pred ccEEEEecCCC---cCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLA---QGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~---~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.-+|+++|.=+ .--..+...|++.|.++|.+|.|+.+|-
T Consensus 23 A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 64 (180)
T 1pno_A 23 ASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPV 64 (180)
T ss_dssp CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 34788887321 2245689999999999999999999984
No 210
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.92 E-value=87 Score=22.94 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=23.5
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecc
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGT 148 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~ 148 (492)
+.++. .+||+||.|...+ .+..+++. -++|.+.++..
T Consensus 39 ~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 39 KKFFS--GNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHhc--CCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 34455 6899999998654 34444433 25787776554
No 211
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=32.91 E-value=39 Score=31.49 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=27.7
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.++||.|+-.++.| +-.+|+-|+++||+|+..=.
T Consensus 3 ~~~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~ 36 (326)
T 3eag_A 3 AMKHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDA 36 (326)
T ss_dssp CCCEEEEESCCSHH----HHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcC
Confidence 36789999777766 55799999999999998754
No 212
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=32.89 E-value=43 Score=30.40 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=24.3
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|++|+++ ++.|.+- ..|++.|.++||+|+.++-.
T Consensus 4 ~~~ilVt--GatG~iG--~~l~~~L~~~g~~V~~l~R~ 37 (308)
T 1qyc_A 4 RSRILLI--GATGYIG--RHVAKASLDLGHPTFLLVRE 37 (308)
T ss_dssp CCCEEEE--STTSTTH--HHHHHHHHHTTCCEEEECCC
T ss_pred CCEEEEE--cCCcHHH--HHHHHHHHhCCCCEEEEECC
Confidence 4577766 3444443 36889999999999987754
No 213
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=32.87 E-value=39 Score=28.98 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=24.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+++ ++.|-+- ..|+++|.++||+|+.+.-.
T Consensus 1 M~ilIt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIV--GSTGRVG--KSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEE--STTSHHH--HHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEECC
Confidence 477666 3444333 58899999999999998864
No 214
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=32.65 E-value=43 Score=29.85 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=29.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.|.+..-++-|-..-..+||..|+++|++|.++=.
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~ 37 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGC 37 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcC
Confidence 45565566789999999999999999999998743
No 215
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=32.63 E-value=86 Score=24.66 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=33.6
Q ss_pred hcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccccCHHHHHHHHHHHhcc
Q 011142 377 SAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDE 441 (492)
Q Consensus 377 ~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ll~~ 441 (492)
...+|+|++--..+ ........ +.|+--.+.+. ++.++|..+|++++..
T Consensus 73 ~~~~pii~ls~~~~-~~~~~~~~-~~g~~~~l~kP--------------~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 73 DPDLPMILVTGHGD-IPMAVQAI-QDGAYDFIAKP--------------FAADRLVQSARRAEEK 121 (155)
T ss_dssp CTTSCEEEEECGGG-HHHHHHHH-HTTCCEEEESS--------------CCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCC-hHHHHHHH-hcCCCeEEeCC--------------CCHHHHHHHHHHHHHH
Confidence 34788888754333 33445553 67776666654 8999999999999863
No 216
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=32.59 E-value=33 Score=31.69 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=26.3
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.+||||.|+-.+..| ..+|+.|+++||+|++...
T Consensus 19 ~~m~~I~iIG~G~mG-----~~~A~~l~~~G~~V~~~dr 52 (310)
T 3doj_A 19 SHMMEVGFLGLGIMG-----KAMSMNLLKNGFKVTVWNR 52 (310)
T ss_dssp CCSCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred ccCCEEEEECccHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 457899999544443 5789999999999998754
No 217
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=32.56 E-value=47 Score=29.45 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=29.9
Q ss_pred cEEEEe-c-CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLF-P-FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~-~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+|++.+ . -++.|-..-...||..|+++|++|.++=...
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 455444 3 4568999999999999999999999986543
No 218
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=32.51 E-value=44 Score=31.02 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=24.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+++++|+++ ++.|-+- ..|+++|.++||+|+.+.-
T Consensus 25 ~~~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~r 59 (343)
T 2b69_A 25 KDRKRILIT--GGAGFVG--SHLTDKLMMDGHEVTVVDN 59 (343)
T ss_dssp --CCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEEC
T ss_pred cCCCEEEEE--cCccHHH--HHHHHHHHHCCCEEEEEeC
Confidence 456777766 3444443 4788999999999999875
No 219
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=32.45 E-value=66 Score=23.92 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHHc----CCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGKF----NIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l----giP~v~~~~~~ 149 (492)
+.++. .+||+||.|...+ .+..+++.+ .+|.+.++...
T Consensus 40 ~~~~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 40 EIMQN--QSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHH--SCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHhc--CCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 34555 6899999997654 345555443 57777765543
No 220
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=32.43 E-value=29 Score=29.63 Aligned_cols=36 Identities=6% Similarity=-0.099 Sum_probs=23.5
Q ss_pred ccEEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 7 QLHFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 7 ~~~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
||||+++. +|-.+.-.-...+++.+.+.|++|++.-
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~d 37 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHE 37 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEE
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEE
Confidence 56887766 4443322455667788888899888775
No 221
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=32.38 E-value=57 Score=29.05 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=26.3
Q ss_pred CCCccEEEEecCCC--cCCHHHHHH-HHHHHHhCCCeEEEEeC
Q 011142 4 QANQLHFVLFPFLA--QGHMIPMID-IARLLAQRGVIITIVTT 43 (492)
Q Consensus 4 ~~~~~~il~~~~~~--~GH~~p~l~-LA~~L~~rGH~Vt~~~~ 43 (492)
.+.||||+++.... .|...-+.. +++.|.+.|++|.++--
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL 73 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDP 73 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 34578998887443 355544444 56777778999887753
No 222
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=32.32 E-value=34 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=24.3
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
++|||.|+-.+..|. .+|+.|.+.||+|+++..
T Consensus 3 ~~~~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~~ 35 (301)
T 3cky_A 3 KSIKIGFIGLGAMGK-----PMAINLLKEGVTVYAFDL 35 (301)
T ss_dssp -CCEEEEECCCTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEECccHHHH-----HHHHHHHHCCCeEEEEeC
Confidence 467999996555553 568889999999987643
No 223
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=32.09 E-value=44 Score=30.78 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=26.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|.||.|+-.+..|. ++|+.|.+.||+|++.--
T Consensus 3 M~kIgfIGlG~MG~-----~mA~~L~~~G~~v~v~dr 34 (300)
T 3obb_A 3 MKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDL 34 (300)
T ss_dssp CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred cCEEEEeeehHHHH-----HHHHHHHhCCCeEEEEcC
Confidence 56899998777774 789999999999998753
No 224
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=32.03 E-value=70 Score=25.60 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=27.4
Q ss_pred ccEEEEec-CCCcCCHHH--HHHHHHHHHhCCCeE-EEEeCCc
Q 011142 7 QLHFVLFP-FLAQGHMIP--MIDIARLLAQRGVII-TIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~-~~~~GH~~p--~l~LA~~L~~rGH~V-t~~~~~~ 45 (492)
.||++|+- .+-+|+-.. .+.+|..+.+.||+| .++-..+
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~D 54 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYRE 54 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEech
Confidence 46775555 444666554 567799999999999 7776643
No 225
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=31.89 E-value=48 Score=29.52 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=31.3
Q ss_pred CccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+|+|++.+. -++-|=..-..+||..|+++|++|.++=...
T Consensus 16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 355665554 4468899999999999999999999986544
No 226
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.85 E-value=64 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=22.3
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
.+++ .+||+||.|.... .+..+.+. -++|++.++...
T Consensus 46 ~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 46 LLGG--FTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHTT--CCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred HHhc--CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 4455 7899999997654 23333332 368888876554
No 227
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=31.49 E-value=28 Score=32.29 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=25.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.++||+++-.++.| ..+|..|++.||+|+++..
T Consensus 18 ~~~kI~IiGaGa~G-----~~~a~~L~~~G~~V~l~~~ 50 (318)
T 3hwr_A 18 QGMKVAIMGAGAVG-----CYYGGMLARAGHEVILIAR 50 (318)
T ss_dssp --CEEEEESCSHHH-----HHHHHHHHHTTCEEEEECC
T ss_pred cCCcEEEECcCHHH-----HHHHHHHHHCCCeEEEEEc
Confidence 46899999666655 4678999999999999933
No 228
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=31.49 E-value=37 Score=29.65 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=22.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCC-CeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRG-VIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rG-H~Vt~~~~~ 44 (492)
||.++++ ++.|-+- ..|++.|+++| |+|+.+.-.
T Consensus 23 mk~vlVt-GatG~iG--~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 23 MKNVLIL-GAGGQIA--RHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp CEEEEEE-TTTSHHH--HHHHHHHTTCTTEEEEEEESS
T ss_pred ccEEEEE-eCCcHHH--HHHHHHHHhCCCceEEEEEcC
Confidence 4444444 3334332 47899999999 899988754
No 229
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=31.48 E-value=62 Score=29.88 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|||+++-.++.|- .+|..|++.||+|+++....
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGS-----FYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHH-----HHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHH-----HHHHHHHhCCCeEEEEeCCh
Confidence 6899996665553 67889999999999998765
No 230
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=31.39 E-value=34 Score=30.21 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 011142 24 MIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 24 ~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
-.+||++|+++|++|+++..+.
T Consensus 32 G~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 32 GKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCc
Confidence 4578999999999999999864
No 231
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=31.39 E-value=44 Score=30.86 Aligned_cols=33 Identities=6% Similarity=0.101 Sum_probs=27.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+|||+++..+ ....+++++.++||+|.++....
T Consensus 2 ~m~Ililg~g------~~~~l~~a~~~~G~~v~~~~~~~ 34 (334)
T 2r85_A 2 KVRIATYASH------SALQILKGAKDEGFETIAFGSSK 34 (334)
T ss_dssp CSEEEEESST------THHHHHHHHHHTTCCEEEESCGG
T ss_pred ceEEEEECCh------hHHHHHHHHHhCCCEEEEEECCC
Confidence 4689998755 56789999999999999988754
No 232
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=31.39 E-value=38 Score=33.44 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
.+++++++ .+||++|.... ...+|+.+|||++.+
T Consensus 366 ~le~~i~~--~~pDllig~~~---~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 366 DLEHAARA--GQAQLVIGNSH---ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHH--HTCSEEEECTT---HHHHHHHTTCCEEEC
T ss_pred HHHHHHHh--cCCCEEEEChh---HHHHHHHcCCCEEEe
Confidence 46677777 79999999854 567899999999974
No 233
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=31.39 E-value=43 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=31.3
Q ss_pred CccEEEEecCC---CcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 6 NQLHFVLFPFL---AQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 6 ~~~~il~~~~~---~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
++||..|++.+ +.|-=.-.-.|+.-|..||++|+..=
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~K 60 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIK 60 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCE
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEe
Confidence 46799999965 57777888999999999999999864
No 234
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.34 E-value=69 Score=24.64 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=23.8
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH-------cCCCeEEEecch
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK-------FNIPRITFHGTC 149 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 149 (492)
.+++ .+||+||.|.... .+..+++. -++|++.++...
T Consensus 45 ~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 45 QVAR--RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHH--SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 4455 6899999998654 34444432 367777765554
No 235
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=31.12 E-value=40 Score=31.45 Aligned_cols=37 Identities=14% Similarity=-0.002 Sum_probs=25.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|.+++|+++ ++.|.+- ..|+++|.++||+|+.++-..
T Consensus 8 M~~~~IlVt--GatG~iG--~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 8 SPKGRVLIA--GATGFIG--QFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp ---CCEEEE--CTTSHHH--HHHHHHHHHTTCCEEEEECSS
T ss_pred CCCCeEEEE--CCCcHHH--HHHHHHHHHCCCCEEEEECCC
Confidence 345677776 4555444 468899999999999998644
No 236
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=31.07 E-value=37 Score=25.43 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=24.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCC-CeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRG-VIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rG-H~Vt~~~~~ 44 (492)
+++|+++- + |.+- ..+++.|.++| |+|+++...
T Consensus 5 ~~~v~I~G--~-G~iG--~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVG--A-GKIG--QMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEEC--C-SHHH--HHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEEC--C-CHHH--HHHHHHHHhCCCceEEEEeCC
Confidence 56788773 3 4433 46899999999 999887753
No 237
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=31.05 E-value=47 Score=30.80 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=26.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
++|||.|+-.+..| ..+|+.|++.||+|+++..
T Consensus 30 ~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr 62 (320)
T 4dll_A 30 YARKITFLGTGSMG-----LPMARRLCEAGYALQVWNR 62 (320)
T ss_dssp CCSEEEEECCTTTH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEECccHHH-----HHHHHHHHhCCCeEEEEcC
Confidence 35799999666565 5789999999999998754
No 238
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=30.97 E-value=54 Score=26.12 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=26.1
Q ss_pred EEEEec-CCCcCCHHH--HHHHHHHHHhCCCeEEEEeCCc
Q 011142 9 HFVLFP-FLAQGHMIP--MIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 9 ~il~~~-~~~~GH~~p--~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|++|+- .+-+|+... .+.+|..++..||+|.++-..+
T Consensus 7 k~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~D 46 (136)
T 2hy5_B 7 KFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDD 46 (136)
T ss_dssp EEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGG
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhH
Confidence 465554 334665444 5777999999999999887654
No 239
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=30.92 E-value=27 Score=32.04 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=25.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
++||.|+-.+..|. .+|+.|+++||+|+++..
T Consensus 15 ~~~I~vIG~G~mG~-----~~A~~l~~~G~~V~~~dr 46 (296)
T 3qha_A 15 QLKLGYIGLGNMGA-----PMATRMTEWPGGVTVYDI 46 (296)
T ss_dssp CCCEEEECCSTTHH-----HHHHHHTTSTTCEEEECS
T ss_pred CCeEEEECcCHHHH-----HHHHHHHHCCCeEEEEeC
Confidence 46899996665553 689999999999998854
No 240
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=30.86 E-value=66 Score=23.84 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=21.9
Q ss_pred CCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 117 PRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
.+||+||.|...+ .+..+++. -++|.+.++...
T Consensus 46 ~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 4799999998664 34444443 367888776554
No 241
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=30.71 E-value=63 Score=29.71 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=25.3
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.+.++|++. ++.|.+- ..|++.|.++||+|+.+.-.
T Consensus 9 ~~~~~vlVT--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 44 (342)
T 1y1p_A 9 PEGSLVLVT--GANGFVA--SHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp CTTCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEE--CCccHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 445677666 4445443 46889999999999988753
No 242
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=30.43 E-value=50 Score=25.15 Aligned_cols=38 Identities=8% Similarity=-0.069 Sum_probs=25.6
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
.++|||+++|..+.|--.-...+-+...++|.+|.+..
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a 41 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS 41 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 46789999998776555444455555556788888754
No 243
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=30.39 E-value=71 Score=29.36 Aligned_cols=39 Identities=5% Similarity=-0.153 Sum_probs=29.2
Q ss_pred ccEEEEecCCCcC-C---HHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQG-H---MIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~G-H---~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++||+++..+..+ | +.....+++.|.++||+|..+.+..
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5688888754322 2 3467899999999999999998543
No 244
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=30.32 E-value=59 Score=28.33 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=24.0
Q ss_pred CCCccEEEEec-CCCc----CCHHH-H-HHHHHHHHhCCCeEEEEeC
Q 011142 4 QANQLHFVLFP-FLAQ----GHMIP-M-IDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 4 ~~~~~~il~~~-~~~~----GH~~p-~-l~LA~~L~~rGH~Vt~~~~ 43 (492)
-..||||+++. +|-. +-.+- + -.+++.|.+.||+|.++-.
T Consensus 22 ~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL 68 (218)
T 3rpe_A 22 SNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTV 68 (218)
T ss_dssp --CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred cccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 35578988776 4433 22333 2 2456667778999988664
No 245
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.30 E-value=96 Score=23.34 Aligned_cols=39 Identities=5% Similarity=0.062 Sum_probs=29.1
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|...++.+||+++- .+-.-...|.+.|.+.|++|+.+.+
T Consensus 1 M~~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~ 39 (130)
T 3eod_A 1 MTQPLVGKQILIVE----DEQVFRSLLDSWFSSLGATTVLAAD 39 (130)
T ss_dssp --CTTTTCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CCCCCCCCeEEEEe----CCHHHHHHHHHHHHhCCceEEEeCC
Confidence 67777788999985 4555667788889999999987654
No 246
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=30.28 E-value=31 Score=33.75 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=23.9
Q ss_pred CCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 3 TQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.+.++|||.++-.+..| +.+|..|++ ||+|+.+-.
T Consensus 32 r~~~~mkIaVIGlG~mG-----~~lA~~La~-G~~V~~~D~ 66 (432)
T 3pid_A 32 RGSEFMKITISGTGYVG-----LSNGVLIAQ-NHEVVALDI 66 (432)
T ss_dssp ---CCCEEEEECCSHHH-----HHHHHHHHT-TSEEEEECS
T ss_pred cccCCCEEEEECcCHHH-----HHHHHHHHc-CCeEEEEec
Confidence 45667899998544444 356778887 999998764
No 247
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=30.28 E-value=52 Score=27.82 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=29.9
Q ss_pred cEEEEecCCC---cCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLA---QGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~---~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
-+|+++|.-+ .--..+...|++.|.++|.+|.|..+|-
T Consensus 47 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 87 (203)
T 2fsv_C 47 SKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPV 87 (203)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4788887321 2235689999999999999999999974
No 248
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=30.22 E-value=55 Score=29.03 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCc-------cHHHHHHHcCCCeEEE
Q 011142 107 PVENFFAQLKPRPNCIISDMCLP-------YTAHIAGKFNIPRITF 145 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~v~~ 145 (492)
.+.++++....+||+|++|..-. -|..+.-.+|+|+|-+
T Consensus 98 ~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGV 143 (246)
T 3ga2_A 98 LIIEAAKKLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGI 143 (246)
T ss_dssp HHHHHHHHCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHhcCCCCCEEEEcCcEEecCCCcchhheeeeecCCCEEee
Confidence 33444444345899999998532 3456778899999975
No 249
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=30.16 E-value=39 Score=30.67 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=25.5
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|++.||.++-.+..| ..+|..|+++||+|+++..
T Consensus 2 m~~~kV~VIGaG~mG-----~~iA~~la~~G~~V~l~d~ 35 (283)
T 4e12_A 2 TGITNVTVLGTGVLG-----SQIAFQTAFHGFAVTAYDI 35 (283)
T ss_dssp CSCCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCCCEEEEECCCHHH-----HHHHHHHHhCCCeEEEEeC
Confidence 446789998444344 4789999999999998754
No 250
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=30.15 E-value=1.4e+02 Score=26.52 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=24.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+.|+++++..+. - -=.++|++|+++|++|++...
T Consensus 25 ~~k~vlITGas~-g--IG~a~a~~l~~~G~~V~~~~~ 58 (272)
T 4e3z_A 25 DTPVVLVTGGSR-G--IGAAVCRLAARQGWRVGVNYA 58 (272)
T ss_dssp CSCEEEETTTTS-H--HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCc-h--HHHHHHHHHHHCCCEEEEEcC
Confidence 456777775442 2 235899999999999988744
No 251
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=30.13 E-value=44 Score=29.97 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=25.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
||||+++- + |.+- ..|++.|.++||+|+.++-..
T Consensus 5 ~~~ilVtG--a-G~iG--~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFG--H-GYTA--RVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CCEEEEET--C-CHHH--HHHHHHHGGGTCEEEEEESCG
T ss_pred cCcEEEEC--C-cHHH--HHHHHHHHHCCCEEEEEEcCh
Confidence 46777773 4 6554 378999999999999998643
No 252
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=30.06 E-value=70 Score=25.11 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 107 PVENFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
...+.+++ .+||+||.|.... .+..+++. -++|++.++...
T Consensus 57 ~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 57 EAIQLLEK--ESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHHHHTT--SCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHhhc--cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 34455666 7899999998654 34444433 367877776543
No 253
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.96 E-value=69 Score=24.09 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-------cCCCeEEEecc
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-------FNIPRITFHGT 148 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 148 (492)
+.+++ .+||+||.|.... .+..+++. .++|++.++..
T Consensus 41 ~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 41 HAMST--RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 34555 6899999997654 34444432 35677765443
No 254
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=29.91 E-value=51 Score=30.30 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=23.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
||+|+++ ++.|-+- ..|++.|.++||+|+.+.-
T Consensus 1 M~~ilVt--GatG~iG--~~l~~~L~~~g~~V~~~~r 33 (330)
T 2c20_A 1 MNSILIC--GGAGYIG--SHAVKKLVDEGLSVVVVDN 33 (330)
T ss_dssp -CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEE--CCCcHHH--HHHHHHHHhCCCEEEEEeC
Confidence 4577666 3344332 5789999999999998864
No 255
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=29.74 E-value=1.8e+02 Score=28.10 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=24.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.||+++- .| ...+.+++.+++.|++|+++.+.
T Consensus 2 k~ilI~g---~g--~~~~~i~~a~~~~G~~vv~v~~~ 33 (451)
T 2vpq_A 2 KKVLIAN---RG--EIAVRIIRACRDLGIQTVAIYSE 33 (451)
T ss_dssp CEEEECC---CH--HHHHHHHHHHHHTTCEEEEEEEG
T ss_pred ceEEEeC---CC--HHHHHHHHHHHHcCCEEEEEecc
Confidence 4777764 23 24567899999999999988764
No 256
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=29.69 E-value=53 Score=33.46 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCCCccEEEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 1 MDTQANQLHFVLFPF-LAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 1 m~~~~~~~~il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|....++.+|+|++. ++-|-..-..+||..|+++|++|.++....
T Consensus 1 ~~~~~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 1 MQFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CGGGSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCCCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 555556678877774 469999999999999999999999998875
No 257
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=29.65 E-value=46 Score=29.36 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=27.6
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.+|||.|+-.+..|- .||..|+++||+|+.+..
T Consensus 5 ~~mkI~IIG~G~~G~-----sLA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTV-----NMAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCEEEEECCSCCCS-----CHHHHHHHTTCEEEECSS
T ss_pred CCcEEEEEeeCHHHH-----HHHHHHHHCCCEEEEecC
Confidence 468999998887764 689999999999998766
No 258
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=29.62 E-value=54 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=29.9
Q ss_pred cEEEEecCCC---cCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLA---QGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~---~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
-+|+++|.-+ .--..+...|++.|.++|.+|.|+.+|-
T Consensus 46 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 86 (207)
T 1djl_A 46 NSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPV 86 (207)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCcc
Confidence 4788887321 2245688999999999999999999974
No 259
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=29.62 E-value=41 Score=26.89 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=29.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVN 46 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 46 (492)
..+++++.. ..=+.|++.+++.|.++|.+|+++ ....
T Consensus 18 ~~~~llIaG--G~GiaPl~sm~~~l~~~~~~v~l~-g~R~ 54 (142)
T 3lyu_A 18 FGKILAIGA--YTGIVEVYPIAKAWQEIGNDVTTL-HVTF 54 (142)
T ss_dssp CSEEEEEEE--TTHHHHHHHHHHHHHHTTCEEEEE-EEEE
T ss_pred CCeEEEEEC--cCcHHHHHHHHHHHHhcCCcEEEE-EeCC
Confidence 347877763 335899999999999999999998 5443
No 260
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=29.47 E-value=59 Score=27.27 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=25.8
Q ss_pred ccEEEEecCCCcCCHHHHH-HHHHHHHh-CCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMI-DIARLLAQ-RGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l-~LA~~L~~-rGH~Vt~~~~ 43 (492)
||||+++-....|+..-+. .+++.|.+ .|++|.++--
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l 39 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRV 39 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEEC
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 4688887766677776544 45677777 7998887764
No 261
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=29.45 E-value=68 Score=25.28 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=24.5
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
+.+++ .+||+||.|.... .+..+++. -++|++.++...
T Consensus 52 ~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 52 QLLAS--REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHc--CCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCC
Confidence 34556 6899999998654 34444433 367887765543
No 262
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=29.45 E-value=48 Score=30.83 Aligned_cols=35 Identities=6% Similarity=0.052 Sum_probs=25.8
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++++|+++ ++.|.+- ..|++.|.++||+|+.+.-.
T Consensus 24 ~~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 24 SPKTWLIT--GVAGFIG--SNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp SCCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEECC
T ss_pred CCCeEEEE--CCCcHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 35677766 4555554 47899999999999998753
No 263
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=29.37 E-value=2.4e+02 Score=23.23 Aligned_cols=144 Identities=13% Similarity=0.045 Sum_probs=75.3
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCc
Q 011142 281 SVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSI 360 (492)
Q Consensus 281 ~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~ 360 (492)
|.|-|-+||.. +-....+....++.++..+-..+.+-.. .|+.+. +|+.... -...++
T Consensus 6 p~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~SaHR--------tp~~l~-----------~~~~~~~-~~g~~V 63 (166)
T 3oow_A 6 VQVGVIMGSKS--DWSTMKECCDILDNLGIGYECEVVSAHR--------TPDKMF-----------DYAETAK-ERGLKV 63 (166)
T ss_dssp EEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCTTT--------CHHHHH-----------HHHHHTT-TTTCCE
T ss_pred CeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcCcC--------CHHHHH-----------HHHHHHH-hCCCcE
Confidence 45777778866 4445666777777777766555544332 333221 1211110 012234
Q ss_pred cccccccCch----hhHHHHhcCCCeeccCCccc---cchhHHHHHHHhcc--ceee-cccCCcccccccccccccCHHH
Q 011142 361 GGFLTHCGWN----STIEGVSAGLPLLTWPLFGD---QFMNEKLVVQILKI--GVKV-GVESPMIWGEEQKIGVLMKRDD 430 (492)
Q Consensus 361 ~~~ItHgG~~----s~~Eal~~GvP~v~~P~~~D---Q~~na~rv~e~~G~--G~~l-~~~~~~~~~~~~~~~~~~~~~~ 430 (492)
+|.=+|.. ++.-+ ..-+|+|.+|...- ..+--.-+. +.=. ++.. ..+ +.+..++..
T Consensus 64 --iIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~dsLlS~v-qmp~gvpVatV~I~----------~ag~~nAa~ 129 (166)
T 3oow_A 64 --IIAGAGGAAHLPGMVAA-KTTLPVLGVPVKSSTLNGQDSLLSIV-QMPAGIPVATFAIG----------MAGAKNAAL 129 (166)
T ss_dssp --EEEEECSSCCHHHHHHH-TCSSCEEEEECCCTTTTTHHHHHHHH-TCCTTSCCEECCST----------HHHHHHHHH
T ss_pred --EEEECCcchhhHHHHHh-ccCCCEEEeecCcCCCCCHHHHHHHh-cCCCCCceEEEecC----------CccchHHHH
Confidence 88877754 33333 34689999998532 222222222 3322 2221 111 001245556
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhc
Q 011142 431 VRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQE 465 (492)
Q Consensus 431 l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~ 465 (492)
++..|-.+ .|+ .++++.+.+++..++.+.+
T Consensus 130 lAa~Il~~-~d~----~l~~kl~~~r~~~~~~v~~ 159 (166)
T 3oow_A 130 FAASILQH-TDI----NIAKALAEFRAEQTRFVLE 159 (166)
T ss_dssp HHHHHHGG-GCH----HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-CCH----HHHHHHHHHHHHHHHHHHh
Confidence 66555443 455 8899999988888766544
No 264
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=29.34 E-value=1e+02 Score=22.73 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=24.4
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
+.+++ .+||+||.|...+ .+..+++. -.+|++.++...
T Consensus 38 ~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 38 YYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 34555 6899999998654 34444433 357888776543
No 265
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=29.28 E-value=65 Score=24.64 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=23.9
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
+.+++ .+||+||.|...+ .+..+++. -++|.+.++...
T Consensus 43 ~~~~~--~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 43 KLIEE--YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp HHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHhh--cCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCC
Confidence 34445 5899999998654 34444433 257777775543
No 266
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=29.17 E-value=29 Score=32.96 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=25.0
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++|||.|+-.+..| ..+|+.|+++||+|+++..
T Consensus 19 Mm~~mkIgiIGlG~mG-----~~~A~~L~~~G~~V~v~dr 53 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMG-----ADMVRRLRKGGHECVVYDL 53 (358)
T ss_dssp ---CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred hhcCCEEEEECchHHH-----HHHHHHHHhCCCEEEEEeC
Confidence 3556899999544433 4789999999999998854
No 267
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=29.13 E-value=50 Score=30.48 Aligned_cols=37 Identities=5% Similarity=0.214 Sum_probs=28.8
Q ss_pred ccEEEEecCCCcCCHH-HHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMI-PMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~-p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+||+++..+..++.. ....+.+.|.++|++|.+..+
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~ 41 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSA 41 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 5689999998877654 477889999999999887654
No 268
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=28.81 E-value=1.9e+02 Score=25.79 Aligned_cols=32 Identities=28% Similarity=0.236 Sum_probs=23.7
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++++..+.| -=.++|+.|+++|++|.++..
T Consensus 30 k~~lVTGas~G---IG~aia~~la~~G~~V~~~~~ 61 (280)
T 4da9_A 30 PVAIVTGGRRG---IGLGIARALAASGFDIAITGI 61 (280)
T ss_dssp CEEEEETTTSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEecCCCH---HHHHHHHHHHHCCCeEEEEeC
Confidence 67777754432 235889999999999998874
No 269
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=28.63 E-value=68 Score=24.75 Aligned_cols=37 Identities=5% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
+.+++ .+||+||.|. .. .+..+.+. -++|++.++...
T Consensus 42 ~~l~~--~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 42 TFLRR--EKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHTT--SCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHhc--cCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 34555 6899999998 54 23333332 268888876553
No 270
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=28.61 E-value=58 Score=29.46 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
..|.+..-++-|-..-..+||..|+++|++|.++=.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~ 38 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGC 38 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 345555566799999999999999999999998743
No 271
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=28.58 E-value=55 Score=32.69 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=25.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+|||+++ ++.|-+- ..|++.|.++||+|+.++-.
T Consensus 147 ~m~VLVT--GatG~IG--~~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 147 PLTVAIT--GSRGLVG--RALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCEEEEE--STTSHHH--HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEECC
Confidence 7888777 4445444 47899999999999998754
No 272
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=28.56 E-value=92 Score=23.12 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH----cCCCeEEEecch
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK----FNIPRITFHGTC 149 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~----lgiP~v~~~~~~ 149 (492)
.+++ .+||+||.|...+ .+..+++. -++|.+.++...
T Consensus 42 ~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 42 ILSE--YDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHH--SCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred HHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 4455 6899999998654 34444433 367777765543
No 273
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=28.52 E-value=56 Score=29.92 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=25.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|++|+++ ++.|.+- ..|+++|.++||+|+.++-..
T Consensus 4 ~~~ilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIY--GGTGYIG--KFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEE--TTTSTTH--HHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEE--cCCchhH--HHHHHHHHhCCCcEEEEECCc
Confidence 4567666 4455543 368899999999999987643
No 274
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=28.50 E-value=83 Score=23.17 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCCcEEEEcCCCc--cHHHHHHH----cCCCeEEEecch
Q 011142 117 PRPNCIISDMCLP--YTAHIAGK----FNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~D~~~~--~~~~~A~~----lgiP~v~~~~~~ 149 (492)
.+||+||.|...+ .+..+++. -.+|.+.++...
T Consensus 44 ~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 44 EQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred CCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 5899999997654 34444433 468888776554
No 275
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=28.43 E-value=73 Score=27.67 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=24.7
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|...++.+++++. ++.|.+ =..++++|+++|++|+++.-.
T Consensus 1 m~~~~~~~~vlVT--Gasggi--G~~~a~~l~~~G~~V~~~~r~ 40 (244)
T 1cyd_A 1 MKLNFSGLRALVT--GAGKGI--GRDTVKALHASGAKVVAVTRT 40 (244)
T ss_dssp --CCCTTCEEEEE--STTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CccCCCCCEEEEe--CCCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4434444555544 333433 247899999999999887653
No 276
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=28.40 E-value=93 Score=23.77 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=44.4
Q ss_pred ccCCCccccccccCchh---------hHHHHhcCCCeeccCCccccchhHHHHHHHhccceeecccCCcccccccccccc
Q 011142 355 LSHPSIGGFLTHCGWNS---------TIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVL 425 (492)
Q Consensus 355 L~~~~~~~~ItHgG~~s---------~~Eal~~GvP~v~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~~ 425 (492)
+..+++ +|-..|..| +..|...|+|++++=..+.+.. -..+ ++.+..++ .
T Consensus 36 I~~~~~--vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~-P~~l-~~~a~~iV-----------------~ 94 (111)
T 1eiw_A 36 PEDADA--VIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENV-PPEL-EAVSSEVV-----------------G 94 (111)
T ss_dssp SSSCSE--EEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCC-CTTH-HHHCSEEE-----------------C
T ss_pred cccCCE--EEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcC-CHHH-HhhCceec-----------------c
Confidence 456677 888888887 5667889999999876665422 2224 34433321 3
Q ss_pred cCHHHHHHHHHHHhc
Q 011142 426 MKRDDVRNAVEKLMD 440 (492)
Q Consensus 426 ~~~~~l~~ai~~ll~ 440 (492)
-+.+.|.++|+..++
T Consensus 95 Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 95 WNPHCIRDALEDALD 109 (111)
T ss_dssp SCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhccC
Confidence 788999999998764
No 277
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=28.37 E-value=66 Score=24.08 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=21.6
Q ss_pred CCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 117 PRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
.+||+||.|...+ .+..+++. -++|.+.++...
T Consensus 46 ~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 46 ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 4899999997654 34444433 367887776543
No 278
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=28.34 E-value=1.5e+02 Score=25.88 Aligned_cols=32 Identities=16% Similarity=-0.022 Sum_probs=23.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++++..+.| -=.++|+.|+++|++|.++.-
T Consensus 8 k~vlVTGas~G---IG~aia~~l~~~G~~V~~~~r 39 (252)
T 3h7a_A 8 ATVAVIGAGDY---IGAEIAKKFAAEGFTVFAGRR 39 (252)
T ss_dssp CEEEEECCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 56666644422 235899999999999998875
No 279
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=28.18 E-value=22 Score=32.25 Aligned_cols=29 Identities=10% Similarity=0.215 Sum_probs=24.5
Q ss_pred CCCccccccccCchhhHHHHhc------CCCeeccCC
Q 011142 357 HPSIGGFLTHCGWNSTIEGVSA------GLPLLTWPL 387 (492)
Q Consensus 357 ~~~~~~~ItHgG~~s~~Eal~~------GvP~v~~P~ 387 (492)
.+++ +|+=||=||+.+++.. ++|++++|.
T Consensus 35 ~~D~--vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 35 EPEI--VISIGGDGTFLSAFHQYEERLDEIAFIGIHT 69 (272)
T ss_dssp SCSE--EEEEESHHHHHHHHHHTGGGTTTCEEEEEES
T ss_pred CCCE--EEEEcCcHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 3466 9999999999998764 899999985
No 280
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=28.15 E-value=70 Score=28.77 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=32.1
Q ss_pred CccEEEEecC--CCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPF--LAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~--~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+.+|+++++. ++-|-..-..+||..|++.|.+|.++-...
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3456666653 578999999999999999999999986543
No 281
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=28.15 E-value=50 Score=30.97 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCc-cHHHHHHHcCCCeEEE
Q 011142 107 PVENFFAQLKPRPNCIISDMCLP-YTAHIAGKFNIPRITF 145 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~v~~ 145 (492)
.++++++- +||+||...... -.....+.+|||++.+
T Consensus 88 n~E~Ilal---~PDLIi~~~~~~~~~~~~~~~~GiPvv~~ 124 (346)
T 2etv_A 88 DLESLITL---QPDVVFITYVDRXTAXDIQEXTGIPVVVL 124 (346)
T ss_dssp CHHHHHHH---CCSEEEEESCCHHHHHHHHHHHTSCEEEE
T ss_pred CHHHHhcC---CCCEEEEeCCccchHHHHHHhcCCcEEEE
Confidence 45556654 999999875432 1233457789999986
No 282
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=28.13 E-value=65 Score=29.40 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=30.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
..|+++.-++-|=..-..+||..|+++|++|.++=..
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3455555567899999999999999999999998543
No 283
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=28.04 E-value=2.3e+02 Score=26.60 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=30.8
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
++++-.++.|=..-++.++..+...|..|.|+..+...
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 44555677898999999999999999999999887543
No 284
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=27.97 E-value=61 Score=29.85 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=24.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+|||+++ ++.|.+- ..|++.|.++||+|+.++-.
T Consensus 13 ~M~ilVt--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 13 HVKYAVL--GATGLLG--HHAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp CCEEEEE--STTSHHH--HHHHHHHHHTTCEEEEEECT
T ss_pred CCEEEEE--CCCcHHH--HHHHHHHHHCCCEEEEEecC
Confidence 4677776 4444443 47889999999999998753
No 285
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=27.91 E-value=75 Score=29.46 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=32.5
Q ss_pred cEEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.+|+|++ -++-|-..-..+||..|+++|++|.++....
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5666665 4569999999999999999999999998866
No 286
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=27.74 E-value=44 Score=27.31 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=27.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.+++++..+. =+.|++.+++.|.++|.+|+++ ...
T Consensus 24 ~~~llIaGG~--GItPl~sm~~~l~~~~~~v~l~-g~r 58 (158)
T 3lrx_A 24 GKILAIGAYT--GIVEVYPIAKAWQEIGNDVTTL-HVT 58 (158)
T ss_dssp SEEEEEEETT--HHHHHHHHHHHHHHHTCEEEEE-EEC
T ss_pred CeEEEEEccC--cHHHHHHHHHHHHhcCCcEEEE-EeC
Confidence 4677776333 3899999999999999999998 543
No 287
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=27.67 E-value=64 Score=31.39 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=19.8
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGV 36 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH 36 (492)
+|||||++-.++ .-.+||+.|++.+.
T Consensus 2 ~~mkvlviG~gg-----re~ala~~l~~s~~ 27 (431)
T 3mjf_A 2 NAMNILIIGNGG-----REHALGWKAAQSPL 27 (431)
T ss_dssp -CEEEEEEECSH-----HHHHHHHHHTTCTT
T ss_pred CCcEEEEECCCH-----HHHHHHHHHHhCCC
Confidence 478999996654 44579999999875
No 288
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=27.63 E-value=99 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=21.9
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHHc------CCCeEEEecc
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGKF------NIPRITFHGT 148 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~l------giP~v~~~~~ 148 (492)
.+++ .+||+||.|.... .+..+++.+ ..|.+++.+.
T Consensus 45 ~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 45 KLST--FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHHH--TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred HHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeC
Confidence 4455 6899999998754 344444332 3455655444
No 289
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=27.59 E-value=72 Score=27.87 Aligned_cols=35 Identities=3% Similarity=0.021 Sum_probs=28.4
Q ss_pred cEEEEec-C-CCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 8 LHFVLFP-F-LAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 8 ~~il~~~-~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
||.+|++ . .+.|-..-...|++.|+++|++|.++=
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 4555554 3 459999999999999999999999973
No 290
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}
Probab=27.50 E-value=75 Score=26.98 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=29.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
..++++.++..|+..-+..+++.|+++|+.|...-.
T Consensus 32 ~p~vv~~HG~~g~~~~~~~~~~~l~~~G~~v~~~d~ 67 (241)
T 3f67_A 32 LPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPEL 67 (241)
T ss_dssp EEEEEEECCTTCSCHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCEEEEEcCcCccCHHHHHHHHHHHHCCcEEEEecc
Confidence 456777777788888899999999999999887765
No 291
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=27.44 E-value=41 Score=30.49 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=23.3
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
+||||.|+-.+..|. .+|+.|.+.||+|+++.
T Consensus 2 ~~m~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~ 33 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGS-----PMAINLARAGHQLHVTT 33 (295)
T ss_dssp --CEEEECCCSTTHH-----HHHHHHHHTTCEEEECC
T ss_pred CCCEEEEEccCHHHH-----HHHHHHHhCCCEEEEEc
Confidence 357999986555553 57888999999998765
No 292
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=27.44 E-value=76 Score=24.39 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=24.4
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHHc----CCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGKF----NIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l----giP~v~~~~~~ 149 (492)
+.++. .+||+||.|...+ .+..+++.+ .+|.+.++...
T Consensus 42 ~~~~~--~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 42 GKIFS--NKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHH--CCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHh--cCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 34455 6899999997654 344444432 68888775543
No 293
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=27.44 E-value=37 Score=32.25 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=23.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|||+|+=.+-.| +.+|-.|+++||+|+++=
T Consensus 2 m~V~IVGaGpaG-----l~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 2 MHVGIIGAGIGG-----TCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCCEEEEe
Confidence 688888544333 678889999999999983
No 294
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=27.40 E-value=96 Score=23.76 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=25.4
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|...+++++|+++- .+-.-...|.+.|.+.|++|..+.+
T Consensus 1 M~~~~~~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~ 39 (142)
T 3cg4_A 1 MSLAEHKGDVMIVD----DDAHVRIAVKTILSDAGFHIISADS 39 (142)
T ss_dssp -----CCCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESS
T ss_pred CCCCCCCCeEEEEc----CCHHHHHHHHHHHHHCCeEEEEeCC
Confidence 56666788898885 4555666778888888998876554
No 295
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=27.31 E-value=55 Score=31.17 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=28.3
Q ss_pred CccEEEEecCCCcC-C---HHHHHHHHHHH-HhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQG-H---MIPMIDIARLL-AQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~G-H---~~p~l~LA~~L-~~rGH~Vt~~~~ 43 (492)
++|||+++..+..+ | +.....+++.| .++||+|+.+..
T Consensus 2 ~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~ 44 (377)
T 1ehi_A 2 TKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAI 44 (377)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEE
T ss_pred CCcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEE
Confidence 36799988755433 3 33568889999 999999999864
No 296
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=27.23 E-value=78 Score=24.20 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCcEEEEcCCCc---cHHHHHHH----cCCCeEEEecch
Q 011142 117 PRPNCIISDMCLP---YTAHIAGK----FNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~D~~~~---~~~~~A~~----lgiP~v~~~~~~ 149 (492)
.+||+||.|.... .+..+++. .++|++.++...
T Consensus 53 ~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 53 LRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCC
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 4799999997543 34444433 478998876654
No 297
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=27.19 E-value=1.9e+02 Score=25.37 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=23.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
-|+++++..+.| + =.++|++|+++|++|.++..
T Consensus 8 ~k~vlVTGas~G-I--G~aia~~la~~G~~V~~~~~ 40 (259)
T 3edm_A 8 NRTIVVAGAGRD-I--GRACAIRFAQEGANVVLTYN 40 (259)
T ss_dssp TCEEEEETTTSH-H--HHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCch-H--HHHHHHHHHHCCCEEEEEcC
Confidence 356777754432 2 35899999999999998854
No 298
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=27.10 E-value=1.7e+02 Score=25.57 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=25.3
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++|.++++..+ |-+ =.++|++|+++|++|+++...
T Consensus 6 ~~k~vlVTGas-~gI--G~~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 6 FVRHALITAGT-KGL--GKQVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp CCCEEEETTTT-SHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred ccCEEEEeCCC-chh--HHHHHHHHHHCCCEEEEEcCC
Confidence 45777777444 222 358999999999999988553
No 299
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=27.07 E-value=91 Score=23.73 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=25.3
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|..+.++.+|+++- .+-.-...|.+.|.+.|++|..+.+
T Consensus 1 Ms~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~ 39 (136)
T 3hdv_A 1 MSLVAARPLVLVVD----DNAVNREALILYLKSRGIDAVGADG 39 (136)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred CCCCCCCCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeCC
Confidence 66666678898885 4555666778888888999887655
No 300
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=27.01 E-value=1.6e+02 Score=26.10 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=23.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
-|+++++..+.| -=.++|++|+++|++|.+...
T Consensus 27 ~k~~lVTGas~G---IG~aia~~la~~G~~Vv~~~~ 59 (267)
T 3u5t_A 27 NKVAIVTGASRG---IGAAIAARLASDGFTVVINYA 59 (267)
T ss_dssp CCEEEEESCSSH---HHHHHHHHHHHHTCEEEEEES
T ss_pred CCEEEEeCCCCH---HHHHHHHHHHHCCCEEEEEcC
Confidence 467777754432 235889999999999998744
No 301
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=26.95 E-value=2.7e+02 Score=24.36 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=23.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++++..+.| -=.++|++|+++|++|+++.-
T Consensus 12 k~vlVTGas~g---IG~aia~~l~~~G~~V~~~~r 43 (264)
T 3ucx_A 12 KVVVISGVGPA---LGTTLARRCAEQGADLVLAAR 43 (264)
T ss_dssp CEEEEESCCTT---HHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEECCCcH---HHHHHHHHHHHCcCEEEEEeC
Confidence 56667654432 235889999999999988765
No 302
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=26.95 E-value=48 Score=30.00 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=23.9
Q ss_pred ccEEEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPF-LAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
||||+|+-. +..| ..+|+.|+++||+|+++..
T Consensus 11 mm~I~iIG~tG~mG-----~~la~~l~~~g~~V~~~~r 43 (286)
T 3c24_A 11 PKTVAILGAGGKMG-----ARITRKIHDSAHHLAAIEI 43 (286)
T ss_dssp CCEEEEETTTSHHH-----HHHHHHHHHSSSEEEEECC
T ss_pred CCEEEEECCCCHHH-----HHHHHHHHhCCCEEEEEEC
Confidence 469999855 4444 4678899999999987654
No 303
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=26.91 E-value=48 Score=29.54 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=26.6
Q ss_pred cEEEEecCCC--cCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLA--QGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~--~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.+|++++.++ .|+- +.+|+.|+++|++|+++..
T Consensus 59 ~~v~VlcG~GNNGGDG---lv~AR~L~~~G~~V~v~~~ 93 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGDG---LVCARHLKLFGYNPVVFYP 93 (246)
T ss_dssp CEEEEEECSSHHHHHH---HHHHHHHHHTTCCEEEECC
T ss_pred CeEEEEECCCCCHHHH---HHHHHHHHHCCCeEEEEEc
Confidence 4899998776 4443 6889999999999999864
No 304
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=26.88 E-value=1.1e+02 Score=23.93 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=24.3
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
+.+++ .+||+||+|.... .+..+++. -++|++.++...
T Consensus 45 ~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 45 RLYRE--TTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHT--TCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 34555 6899999997654 34433332 368888876554
No 305
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=26.87 E-value=3e+02 Score=23.60 Aligned_cols=108 Identities=9% Similarity=0.091 Sum_probs=55.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCEN 84 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 84 (492)
|+||+++.++. | .-+.+|.+...+. ..+|..+.+..-...+..... ..++.+..++. ..+.
T Consensus 2 m~riavl~Sg~-G--snl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~-----~~gIp~~~~~~--------~~~~- 64 (211)
T 3p9x_A 2 MKRVAIFASGS-G--TNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVK-----VHEIPVCALDP--------KTYP- 64 (211)
T ss_dssp -CEEEEECCTT-C--HHHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHH-----TTTCCEEECCG--------GGSS-
T ss_pred CCEEEEEEeCC-c--hHHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHH-----HcCCCEEEeCh--------hhcC-
Confidence 67998887665 3 3366666665443 257777766421112222211 12566554321 1000
Q ss_pred cccccccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCC-ccHHHHHHHcCCCeEEEecc
Q 011142 85 LDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCL-PYTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 148 (492)
. -....+.+.+.+++ .+||+||+=.+. .-...+-......++-+.++
T Consensus 65 -----~----------r~~~d~~~~~~l~~--~~~Dliv~agy~~Il~~~~l~~~~~~~iNiHpS 112 (211)
T 3p9x_A 65 -----S----------KEAYEIEVVQQLKE--KQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPS 112 (211)
T ss_dssp -----S----------HHHHHHHHHHHHHH--TTCCEEEESSCCSCCCHHHHHHHTTSEEEEESS
T ss_pred -----c----------hhhhHHHHHHHHHh--cCCCEEEEeCchhhcCHHHHhhccCCeEEECCc
Confidence 0 01123456677888 899999977653 33344445555556654444
No 306
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=26.86 E-value=45 Score=30.85 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=27.3
Q ss_pred cEEEEecCCC--cCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLA--QGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~--~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.+|++++.++ .|+- +.+|+.|+.+|++|+++...
T Consensus 133 ~~vlVlcG~GNNGGDG---lv~AR~L~~~G~~V~V~~~~ 168 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQG---ISCGRHLANHDVQVILFLPN 168 (306)
T ss_dssp CEEEEEECSSHHHHHH---HHHHHHHHHTTCEEEEECCC
T ss_pred CeEEEEECCCCCHHHH---HHHHHHHHHCCCcEEEEEec
Confidence 4899999776 4443 68999999999999998653
No 307
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=26.83 E-value=1.2e+02 Score=25.15 Aligned_cols=40 Identities=5% Similarity=0.018 Sum_probs=30.2
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++++||+++..++.. ..-+....+.|.+.|++|.+++...
T Consensus 7 ~~~~~v~il~~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~ 46 (190)
T 2vrn_A 7 LTGKKIAILAADGVE-EIELTSPRAAIEAAGGTTELISLEP 46 (190)
T ss_dssp CTTCEEEEECCTTCB-HHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCEEEEEeCCCCC-HHHHHHHHHHHHHCCCEEEEEecCC
Confidence 446899999876554 4456667788889999999998753
No 308
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=26.71 E-value=94 Score=23.61 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=23.8
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
+.++. ..||+||.|...+ .+..+++. -++|.+.++...
T Consensus 41 ~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 41 AKIEN--EFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HHHHH--SCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCC
T ss_pred HHHhc--CCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccc
Confidence 34455 6899999997654 34444433 357777765543
No 309
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=26.61 E-value=65 Score=28.99 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCc------cHHHHHHHcCCCeEEEecc
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLP------YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 148 (492)
..|.+++++ .+||+||+..... -+..+|..+|+|.+.....
T Consensus 102 ~~La~~i~~--~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 102 RILTEVIKK--EAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHH--HCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHh--cCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 445556666 5899999876552 5788999999999987654
No 310
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=26.54 E-value=39 Score=30.96 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=26.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+++||.++-.+..|+ .||..|+++||+|+++...
T Consensus 14 ~~~~I~VIG~G~mG~-----~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGA-----GIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CCCEEEEECCSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred cCCEEEEECCCHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 456899886655554 6889999999999987653
No 311
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=26.54 E-value=1.4e+02 Score=29.56 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=28.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhh
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNG 52 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~ 52 (492)
.++|-+|++. ++-.-+..+|+.|.+.|+++. ++......+++
T Consensus 8 ~~i~~aLISV---sDK~glvelAk~L~~lGfeI~--ATgGTak~L~e 49 (523)
T 3zzm_A 8 RPIRRALISV---YDKTGLVDLAQGLSAAGVEII--STGSTAKTIAD 49 (523)
T ss_dssp CCCCEEEEEE---SSCTTHHHHHHHHHHTTCEEE--ECHHHHHHHHT
T ss_pred ccccEEEEEE---eccccHHHHHHHHHHCCCEEE--EcchHHHHHHH
Confidence 3456666665 455668899999999999885 55444444443
No 312
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=26.54 E-value=63 Score=29.82 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCCcEEEEcCCCc-cHHHHHHHcCCCeEEEe
Q 011142 108 VENFFAQLKPRPNCIISDMCLP-YTAHIAGKFNIPRITFH 146 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~v~~~ 146 (492)
++++++ .+||+||...... ....--+..|||++.+.
T Consensus 77 ~E~i~~---l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~ 113 (326)
T 3psh_A 77 IESLLA---LKPDVVFVTNYAPSEMIKQISDVNIPVVAIS 113 (326)
T ss_dssp HHHHHH---TCCSEEEEETTCCHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHc---cCCCEEEEeCCCChHHHHHHHHcCCCEEEEe
Confidence 444554 4999999875533 23444567899999864
No 313
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=26.30 E-value=94 Score=23.69 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=23.7
Q ss_pred HHHhcCCCCcEEEEcCCCc-------cHHHHHHH-----cCCCeEEEecch
Q 011142 111 FFAQLKPRPNCIISDMCLP-------YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~-------~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
.+++ .+||+||.|.... .+..+.+. -++|++.++...
T Consensus 42 ~l~~--~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 90 (140)
T 2qr3_A 42 VLRE--ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYA 90 (140)
T ss_dssp HHHH--SCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGG
T ss_pred HHHc--CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCC
Confidence 4455 6899999997543 33433332 378888876554
No 314
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=26.23 E-value=31 Score=32.77 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=27.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++|||.++-.+..| ..+|..|++.||+|++....
T Consensus 28 ~~mkI~VIGaG~mG-----~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 28 FKHPIAILGAGSWG-----TALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCSCEEEECCSHHH-----HHHHHHHHTTTCCEEEECSC
T ss_pred cCCeEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 35799999665555 36899999999999998764
No 315
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=26.14 E-value=35 Score=31.02 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=25.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+||.|+-.+..|. .+|+.|+++||+|++...
T Consensus 1 M~~I~iiG~G~mG~-----~~a~~l~~~G~~V~~~dr 32 (287)
T 3pdu_A 1 MTTYGFLGLGIMGG-----PMAANLVRAGFDVTVWNR 32 (287)
T ss_dssp CCCEEEECCSTTHH-----HHHHHHHHHTCCEEEECS
T ss_pred CCeEEEEccCHHHH-----HHHHHHHHCCCeEEEEcC
Confidence 46899986655553 678999999999998854
No 316
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=26.12 E-value=82 Score=24.39 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEec
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHG 147 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~ 147 (492)
.++. .+||+||.|...+ .+..+++. -++|.+.++.
T Consensus 44 ~~~~--~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 44 IALK--HPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp HHTT--SCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 4455 6899999998654 44544443 2567776543
No 317
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=26.04 E-value=73 Score=28.30 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=24.9
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+.+++. |.++++..+ |-+ =..+++.|+++||+|+++.-.
T Consensus 1 M~~m~~~-k~vlVTGas-~gI--G~~ia~~l~~~G~~V~~~~r~ 40 (267)
T 2gdz_A 1 MAHMVNG-KVALVTGAA-QGI--GRAFAEALLLKGAKVALVDWN 40 (267)
T ss_dssp -CCCCTT-CEEEEETTT-SHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CCcccCC-CEEEEECCC-CcH--HHHHHHHHHHCCCEEEEEECC
Confidence 5554433 445555333 322 357899999999999987643
No 318
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=26.02 E-value=2.3e+02 Score=25.14 Aligned_cols=33 Identities=27% Similarity=0.097 Sum_probs=24.3
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+++++..+.| -=.++|+.|+++|++|+++.-.
T Consensus 11 k~~lVTGas~g---IG~a~a~~l~~~G~~V~~~~r~ 43 (281)
T 3s55_A 11 KTALITGGARG---MGRSHAVALAEAGADIAICDRC 43 (281)
T ss_dssp CEEEEETTTSH---HHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCeEEEEeCC
Confidence 57777755432 2358899999999999988753
No 319
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=25.90 E-value=63 Score=29.75 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=23.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.++|++. ++.|.+- ..|+++|.++||+|+.+.-.
T Consensus 3 ~~~vlVt--GatG~iG--~~l~~~L~~~G~~V~~~~r~ 36 (345)
T 2z1m_A 3 GKRALIT--GIRGQDG--AYLAKLLLEKGYEVYGADRR 36 (345)
T ss_dssp CCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEECC
Confidence 4566665 3444443 47899999999999988653
No 320
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=25.66 E-value=64 Score=28.04 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=31.4
Q ss_pred CccEEEEec--CCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCc
Q 011142 6 NQLHFVLFP--FLAQGHMIPMIDIARLLAQR-GVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~--~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~ 45 (492)
+++|++.+. -++-|-..-..+||..|+++ |++|.++=...
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 355665554 45799999999999999999 99999987643
No 321
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=25.62 E-value=2.5e+02 Score=26.28 Aligned_cols=38 Identities=5% Similarity=0.103 Sum_probs=32.3
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 47 (492)
+++.-.|+.|-..-++.+|..++++|..|.|+..+...
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 56666778999999999999999999999999986543
No 322
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=25.61 E-value=75 Score=23.66 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=21.7
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH-------cCCCeEEEecc
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK-------FNIPRITFHGT 148 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 148 (492)
.+++ .+||+||.|...+ .+..+++. -.+|.+.++..
T Consensus 40 ~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 40 IARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHH--HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECC
Confidence 4444 5799999997654 34544433 25777776443
No 323
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.59 E-value=3.3e+02 Score=23.65 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCc-cHHHHHHHcCCCeEEEe
Q 011142 117 PRPNCIISDMCLP-YTAHIAGKFNIPRITFH 146 (492)
Q Consensus 117 ~~pDlvI~D~~~~-~~~~~A~~lgiP~v~~~ 146 (492)
.++|.||.-.... .....+...|||+|.+.
T Consensus 62 ~~vdgiIi~~~~~~~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 62 RGFDGLILQSFSNPQTVQEILHQQMPVVSVD 92 (276)
T ss_dssp TTCSEEEEESSCCHHHHHHHHTTSSCEEEES
T ss_pred CCCCEEEEecCCcHHHHHHHHHCCCCEEEEe
Confidence 5899999776554 23344556799999863
No 324
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=25.55 E-value=1.8e+02 Score=25.52 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=23.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+++++..+. - -=..+|++|+++|++|.++.-.
T Consensus 30 k~vlITGas~-g--IG~~la~~l~~~G~~V~~~~r~ 62 (262)
T 3rkr_A 30 QVAVVTGASR-G--IGAAIARKLGSLGARVVLTARD 62 (262)
T ss_dssp CEEEESSTTS-H--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCC-h--HHHHHHHHHHHCCCEEEEEECC
Confidence 5677775442 2 3357899999999999887653
No 325
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=25.54 E-value=50 Score=29.66 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=26.7
Q ss_pred cEEEEecCCC--cCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLA--QGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~--~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.+|++++.++ .|+- +.+|+.|+++|++|+++..
T Consensus 86 ~~vlVlcG~GNNGGDG---lv~AR~L~~~G~~V~v~~~ 120 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQG---ISCGRHLANHDVQVILFLP 120 (259)
T ss_dssp CEEEEEECSSHHHHHH---HHHHHHHHHTTCEEEEECC
T ss_pred CeEEEEECCCCCHHHH---HHHHHHHHHCCCeEEEEEe
Confidence 4899999766 4443 6899999999999999864
No 326
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=25.53 E-value=67 Score=29.64 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=22.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
||+|++. ++.|-+- ..|+++|.++||+|+.+.-
T Consensus 1 M~~vlVT--GatG~iG--~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 1 MAKLLIT--GGCGFLG--SNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp -CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEEC
T ss_pred CcEEEEe--CCCchhH--HHHHHHHHhCCCEEEEEeC
Confidence 3566655 3444333 4789999999999999864
No 327
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=25.34 E-value=35 Score=31.78 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=25.2
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.. +++.||.|+-.+..| ..+|..|+++||+|++....
T Consensus 1 m~~-~~~~kI~vIGaG~MG-----~~iA~~la~~G~~V~l~d~~ 38 (319)
T 2dpo_A 1 MAS-PAAGDVLIVGSGLVG-----RSWAMLFASGGFRVKLYDIE 38 (319)
T ss_dssp -------CEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSC
T ss_pred CCC-CCCceEEEEeeCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 533 456789998655444 37899999999999998653
No 328
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=25.33 E-value=65 Score=27.59 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=27.0
Q ss_pred EEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEE
Q 011142 10 FVLFPF-LAQGHMIPMIDIARLLAQRGVIITIV 41 (492)
Q Consensus 10 il~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~ 41 (492)
|+++.. ++-|-..-..+||..|+++|++|.++
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 444443 57999999999999999999999986
No 329
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=25.28 E-value=83 Score=24.24 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=29.1
Q ss_pred cEEEEecCCC-cCCH-HHHHHHHHHHHhCC--CeEEEEeCCcchh
Q 011142 8 LHFVLFPFLA-QGHM-IPMIDIARLLAQRG--VIITIVTTPVNAA 48 (492)
Q Consensus 8 ~~il~~~~~~-~GH~-~p~l~LA~~L~~rG--H~Vt~~~~~~~~~ 48 (492)
+|++|+-+.+ .-.. +..+.+|....++| |+|.++.......
T Consensus 8 ~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~ 52 (117)
T 2fb6_A 8 DKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVK 52 (117)
T ss_dssp SEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHH
T ss_pred CeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeee
Confidence 6887776554 2222 34778899999999 8999998765443
No 330
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=25.10 E-value=1.2e+02 Score=22.74 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=22.6
Q ss_pred HHHhcCC-CCcEEEEcCCCc---cHHHHHHH-----cCCCeEEEecc
Q 011142 111 FFAQLKP-RPNCIISDMCLP---YTAHIAGK-----FNIPRITFHGT 148 (492)
Q Consensus 111 ll~~~~~-~pDlvI~D~~~~---~~~~~A~~-----lgiP~v~~~~~ 148 (492)
.+++ . +||+||.|.... .+..+++. -++|++.++..
T Consensus 44 ~l~~--~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 44 MLKS--GAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHHT--TCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESS
T ss_pred HHHc--CCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4444 4 899999997543 24444433 26888877554
No 331
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=25.10 E-value=28 Score=32.18 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.4
Q ss_pred cccCCCccccccccCchhhHHHHhc----CCCeeccCC
Q 011142 354 ILSHPSIGGFLTHCGWNSTIEGVSA----GLPLLTWPL 387 (492)
Q Consensus 354 lL~~~~~~~~ItHgG~~s~~Eal~~----GvP~v~~P~ 387 (492)
....+++ +|+-||-||+.+++.. ++|+++++.
T Consensus 72 ~~~~~d~--vi~~GGDGT~l~a~~~~~~~~~pvlgi~~ 107 (307)
T 1u0t_A 72 AADGCEL--VLVLGGDGTFLRAAELARNASIPVLGVNL 107 (307)
T ss_dssp ----CCC--EEEEECHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cccCCCE--EEEEeCCHHHHHHHHHhccCCCCEEEEeC
Confidence 3445677 9999999999999754 899999984
No 332
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=25.08 E-value=1.8e+02 Score=25.84 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=24.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.|+++++..+.| -=.++|++|+++|++|.++.-.
T Consensus 24 ~k~~lVTGas~G---IG~aia~~la~~G~~V~~~~r~ 57 (279)
T 3sju_A 24 PQTAFVTGVSSG---IGLAVARTLAARGIAVYGCARD 57 (279)
T ss_dssp -CEEEEESTTSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeCCCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 467777755432 2357899999999999887653
No 333
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=25.07 E-value=59 Score=29.45 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=24.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|++|+++ ++.|.+- ..|+++|.++||+|+.++-.
T Consensus 2 ~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 35 (307)
T 2gas_A 2 ENKILIL--GPTGAIG--RHIVWASIKAGNPTYALVRK 35 (307)
T ss_dssp CCCEEEE--STTSTTH--HHHHHHHHHHTCCEEEEECC
T ss_pred CcEEEEE--CCCchHH--HHHHHHHHhCCCcEEEEECC
Confidence 4567666 4445443 36789999999999988754
No 334
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=25.01 E-value=49 Score=28.40 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=24.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+++||.++-.+..| ..+|..|+++||+|+++..
T Consensus 18 ~~~~I~iiG~G~mG-----~~la~~l~~~g~~V~~~~~ 50 (209)
T 2raf_A 18 QGMEITIFGKGNMG-----QAIGHNFEIAGHEVTYYGS 50 (209)
T ss_dssp --CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECT
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEcC
Confidence 46789988544444 4778999999999998854
No 335
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=24.99 E-value=1.1e+02 Score=26.01 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=28.7
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+.||+++..++.- ..-+....+.|.+.|++|++++..
T Consensus 9 ~~~v~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~ 45 (208)
T 3ot1_A 9 SKRILVPVAHGSE-EMETVIIVDTLVRAGFQVTMAAVG 45 (208)
T ss_dssp CCEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEEECCCCc-HHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4588888877654 455666678889999999999985
No 336
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Probab=24.96 E-value=79 Score=29.23 Aligned_cols=51 Identities=6% Similarity=-0.078 Sum_probs=28.5
Q ss_pred hhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeC
Q 011142 268 HQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIRE 318 (492)
Q Consensus 268 ~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~ 318 (492)
+++...++...-+++-+-..+.....+...+..+.+.+++.+..|++-.+.
T Consensus 127 ~el~~~~~~~g~~Gv~l~~~~~~~~l~d~~~~~~~~~~~e~~lpv~iH~~~ 177 (336)
T 2wm1_A 127 KEMERCVKELGFPGVQIGTHVNEWDLNAQELFPVYAAAERLKCSLFVHPWD 177 (336)
T ss_dssp HHHHHHHHTSCCSEEEEESEETTEETTCGGGHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHccCCeEEEECCcCCCCCCCCccHHHHHHHHHHcCCEEEECCCC
Confidence 556666644323333222111112245567888888888888877766543
No 337
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=24.94 E-value=2.8e+02 Score=22.58 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=68.0
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCCccc
Q 011142 283 VYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGG 362 (492)
Q Consensus 283 Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 362 (492)
|-|-+||.. +-....+....++.++..+=..+.+-.. .|+...+ |.-+. ..++
T Consensus 2 V~Iimgs~S--D~~v~~~a~~~l~~~gi~~dv~V~saHR--------~p~~~~~-----------~~~~a----~~~V-- 54 (157)
T 2ywx_A 2 ICIIMGSES--DLKIAEKAVNILKEFGVEFEVRVASAHR--------TPELVEE-----------IVKNS----KADV-- 54 (157)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTTT--------CHHHHHH-----------HHHHC----CCSE--
T ss_pred EEEEEccHH--HHHHHHHHHHHHHHcCCCeEEEEEcccC--------CHHHHHH-----------HHHhc----CCCE--
Confidence 344566655 4445566777777777776555544332 3432211 11100 0133
Q ss_pred cccccCch----hhHHHHhcCCCeeccCCcccc-chh-HHHHHHH--hcccee-ecccCCcccccccccccccCHHHHHH
Q 011142 363 FLTHCGWN----STIEGVSAGLPLLTWPLFGDQ-FMN-EKLVVQI--LKIGVK-VGVESPMIWGEEQKIGVLMKRDDVRN 433 (492)
Q Consensus 363 ~ItHgG~~----s~~Eal~~GvP~v~~P~~~DQ-~~n-a~rv~e~--~G~G~~-l~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (492)
+|.=+|.. ++.-+ ..-.|+|.+|....- ... -.-+. + .|+.+. +..+ +..+...++.
T Consensus 55 iIa~AG~aa~Lpgvva~-~t~~PVIgVP~~~~l~G~daLlS~v-qmP~gvpVatV~I~------------~~~nAa~lA~ 120 (157)
T 2ywx_A 55 FIAIAGLAAHLPGVVAS-LTTKPVIAVPVDAKLDGLDALLSSV-QMPPGIPVATVGID------------RGENAAILAL 120 (157)
T ss_dssp EEEEEESSCCHHHHHHT-TCSSCEEEEEECSSGGGHHHHHHHH-SCCTTSCCEECCTT------------CHHHHHHHHH
T ss_pred EEEEcCchhhhHHHHHh-ccCCCEEEecCCCccCcHHHHHHHh-cCCCCCeeEEEecC------------CcHHHHHHHH
Confidence 77766653 33333 346899999983211 111 11232 4 353322 2211 2356666666
Q ss_pred HHHHHhccChhhHHHHHHHHHHHHHHHHHH
Q 011142 434 AVEKLMDEGKEGEERRNRAVKLGQMANMAV 463 (492)
Q Consensus 434 ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~ 463 (492)
.|- -+.|+ ..+++.+.+++..++.+
T Consensus 121 ~Il-~~~d~----~l~~kl~~~r~~~~~~v 145 (157)
T 2ywx_A 121 EIL-ALKDE----NIAKKLIEYREKMKKKV 145 (157)
T ss_dssp HHH-TTTCH----HHHHHHHHHHHHHHHHH
T ss_pred HHH-hcCCH----HHHHHHHHHHHHHHHHH
Confidence 664 33455 78888888877766554
No 338
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=24.92 E-value=70 Score=24.26 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=29.5
Q ss_pred CccEEEEecCCCcCCHHHHH-HHHHHHHhCCCe-EEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMI-DIARLLAQRGVI-ITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l-~LA~~L~~rGH~-Vt~~~~ 43 (492)
+|+||+++|..+.|+-.-+. .|-+.+.++|.+ +.+-..
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~ 56 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASC 56 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 46789999999988888777 777788889988 654443
No 339
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=24.89 E-value=2.2e+02 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=23.5
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.++++..+ |- -=..+|++|+++|++|.++.-.
T Consensus 32 k~vlVTGas-~g--IG~~la~~l~~~G~~V~~~~r~ 64 (301)
T 3tjr_A 32 RAAVVTGGA-SG--IGLATATEFARRGARLVLSDVD 64 (301)
T ss_dssp CEEEEETTT-SH--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeCCC-CH--HHHHHHHHHHHCCCEEEEEECC
Confidence 566666444 32 2358899999999999887653
No 340
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=24.80 E-value=74 Score=28.45 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCc------cHHHHHHHcCCCeEEEecc
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLP------YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 148 (492)
..|.+++++ .+||+||+..... -+..+|..+|+|.+.....
T Consensus 106 ~~La~~i~~--~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 106 RVLAKLAEK--EKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHH--HTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHh--cCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 445556666 5799999876542 5788999999999986554
No 341
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=24.79 E-value=90 Score=23.43 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHHc-------CCCeEEEecc
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGKF-------NIPRITFHGT 148 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l-------giP~v~~~~~ 148 (492)
+.++. .+||+||.|...+ .+..+++.+ ++|.+.++..
T Consensus 45 ~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 45 KIMAQ--NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHHT--SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHHc--CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 34555 6899999998654 455555433 4566655443
No 342
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.78 E-value=1.2e+02 Score=22.72 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=23.7
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHHc-------CCCeEEEecc
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGKF-------NIPRITFHGT 148 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l-------giP~v~~~~~ 148 (492)
+.++. .+||+||.|...+ .+..+++.+ .+|.+.++..
T Consensus 43 ~~~~~--~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 43 NKLQA--GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp HHHTT--CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESS
T ss_pred HHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecC
Confidence 34555 6899999998664 455444432 4677776554
No 343
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=24.69 E-value=54 Score=30.52 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEEe
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITFH 146 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 146 (492)
.++++++ .+||+||..........-.+..|||++.+.
T Consensus 108 n~E~i~a---l~PDLIi~~~~~~~~~~~L~~~gipvv~~~ 144 (335)
T 4hn9_A 108 NTEACVA---ATPDVVFLPMKLKKTADTLESLGIKAVVVN 144 (335)
T ss_dssp CHHHHHH---TCCSEEEEEGGGHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHh---cCCCEEEEeCcchhHHHHHHHcCCCEEEEc
Confidence 3455555 499999987543233444567899999874
No 344
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=24.66 E-value=99 Score=27.14 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=25.2
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|...++. |.++++.. .|-+ =..+|+.|+++|++|+++.-.
T Consensus 1 m~~~~~~-k~vlITGa-sggi--G~~la~~l~~~G~~V~~~~r~ 40 (264)
T 2pd6_A 1 MQNRLRS-ALALVTGA-GSGI--GRAVSVRLAGEGATVAACDLD 40 (264)
T ss_dssp CCCCCTT-CEEEEETT-TSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CccccCC-CEEEEECC-CChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4444433 34455533 3322 257899999999999988653
No 345
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=24.61 E-value=37 Score=31.37 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCC-eEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGV-IITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~ 43 (492)
+++|||.|+-.+..| ..+|+.|++.|| +|+++..
T Consensus 22 ~~~~~I~iIG~G~mG-----~~~A~~L~~~G~~~V~~~dr 56 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAA-----SAIASGLRQAGAIDMAAYDA 56 (312)
T ss_dssp ---CEEEEECCSHHH-----HHHHHHHHHHSCCEEEEECS
T ss_pred CCCCEEEEECccHHH-----HHHHHHHHHCCCCeEEEEcC
Confidence 346899999555444 478999999999 8988765
No 346
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=24.52 E-value=47 Score=29.73 Aligned_cols=33 Identities=21% Similarity=0.125 Sum_probs=25.5
Q ss_pred EEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 11 VLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 11 l~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+++.++..|+..-+..+|+.|+++|++|...--
T Consensus 54 VlllHG~~~s~~~~~~la~~La~~Gy~Via~Dl 86 (281)
T 4fbl_A 54 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRL 86 (281)
T ss_dssp EEEECCTTCCGGGGHHHHHHHHHTTCEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEECC
Confidence 344567677877788999999999999876543
No 347
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=24.51 E-value=61 Score=29.22 Aligned_cols=33 Identities=21% Similarity=0.022 Sum_probs=26.7
Q ss_pred cEEEEecCCC--cCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLA--QGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~--~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.+|++++.++ .|+- +.+|+.|+++|++|+++..
T Consensus 80 ~~VlVlcG~GNNGGDG---lv~AR~L~~~G~~V~V~~~ 114 (265)
T 2o8n_A 80 PTVLVICGPGNNGGDG---LVCARHLKLFGYQPTIYYP 114 (265)
T ss_dssp CEEEEEECSSHHHHHH---HHHHHHHHHTTCEEEEECC
T ss_pred CeEEEEECCCCCHHHH---HHHHHHHHHCCCcEEEEEe
Confidence 4899998776 4443 6889999999999999865
No 348
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=24.47 E-value=1.1e+02 Score=26.55 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=28.4
Q ss_pred CCccEEEEecCCCcCC----HHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGH----MIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH----~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.+|.+|.+++....+- ..-...|++.|+++|+.|+.-...
T Consensus 11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg~ 54 (215)
T 2a33_A 11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGS 54 (215)
T ss_dssp CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCCh
Confidence 3455799997555442 235678899999999999776664
No 349
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=24.45 E-value=67 Score=24.75 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=21.2
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-------cCCCeEEEecc
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-------FNIPRITFHGT 148 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 148 (492)
+.+++ .+||+||.|.... .+..+++. -++|++.++..
T Consensus 40 ~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 40 EQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHH--HCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 34455 5899999997654 22222221 46788876554
No 350
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=24.40 E-value=81 Score=24.72 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 107 PVENFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
...+.+++ .+||+||.|.... .+..+.+. -++|++.++...
T Consensus 52 ~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 52 AALELIKA--HLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 34445566 6899999997654 34444433 357777765543
No 351
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.31 E-value=87 Score=24.08 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=21.1
Q ss_pred CCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 117 PRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
.+||+||.|...+ .+..+++. ..+|.+.++...
T Consensus 47 ~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~ 86 (137)
T 3cfy_A 47 SKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHG 86 (137)
T ss_dssp HCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecC
Confidence 5899999997654 34444433 356777765543
No 352
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.31 E-value=1.1e+02 Score=23.51 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=21.9
Q ss_pred CCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 117 PRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 117 ~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
.+||+||.|.... .+..+++. -++|++.++...
T Consensus 48 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp TTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCC
Confidence 6899999998654 34444433 267888776544
No 353
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=24.31 E-value=28 Score=31.30 Aligned_cols=30 Identities=10% Similarity=0.301 Sum_probs=25.2
Q ss_pred cCCCccccccccCchhhHHHHhc---CCCeeccCC
Q 011142 356 SHPSIGGFLTHCGWNSTIEGVSA---GLPLLTWPL 387 (492)
Q Consensus 356 ~~~~~~~~ItHgG~~s~~Eal~~---GvP~v~~P~ 387 (492)
..+++ +|+-||=||+.+++.. ++|+++++.
T Consensus 40 ~~~D~--vv~~GGDGTll~~a~~~~~~~PilGIn~ 72 (258)
T 1yt5_A 40 VTADL--IVVVGGDGTVLKAAKKAADGTPMVGFKA 72 (258)
T ss_dssp BCCSE--EEEEECHHHHHHHHTTBCTTCEEEEEES
T ss_pred CCCCE--EEEEeCcHHHHHHHHHhCCCCCEEEEEC
Confidence 34566 9999999999999876 889998873
No 354
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=24.30 E-value=96 Score=27.19 Aligned_cols=41 Identities=27% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCCCCC-ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 1 MDTQAN-QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 1 m~~~~~-~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|..+++ .-|+++++..+. - -=.++|+.|+++|++|.++...
T Consensus 1 M~~~~~l~gk~~lVTGas~-g--IG~a~a~~l~~~G~~V~~~~r~ 42 (248)
T 3op4_A 1 MSQFMNLEGKVALVTGASR-G--IGKAIAELLAERGAKVIGTATS 42 (248)
T ss_dssp -CCTTCCTTCEEEESSCSS-H--HHHHHHHHHHHTTCEEEEEESS
T ss_pred CccccCCCCCEEEEeCCCC-H--HHHHHHHHHHHCCCEEEEEeCC
Confidence 454433 236777775543 2 2358899999999999887653
No 355
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=24.28 E-value=78 Score=26.47 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=22.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+||+++. ++.|-+- ..++++|+ +||+|+.+.-
T Consensus 3 kM~vlVt--Gasg~iG--~~~~~~l~-~g~~V~~~~r 34 (202)
T 3d7l_A 3 AMKILLI--GASGTLG--SAVKERLE-KKAEVITAGR 34 (202)
T ss_dssp SCEEEEE--TTTSHHH--HHHHHHHT-TTSEEEEEES
T ss_pred CcEEEEE--cCCcHHH--HHHHHHHH-CCCeEEEEec
Confidence 4676555 3444433 57899999 9999998764
No 356
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=24.27 E-value=33 Score=31.39 Aligned_cols=29 Identities=3% Similarity=-0.002 Sum_probs=0.0
Q ss_pred CCccccccccCchhhHHHHhc----CCCeeccCCc
Q 011142 358 PSIGGFLTHCGWNSTIEGVSA----GLPLLTWPLF 388 (492)
Q Consensus 358 ~~~~~~ItHgG~~s~~Eal~~----GvP~v~~P~~ 388 (492)
+++ +|+-||-||+.+++.. ++|+++++..
T Consensus 64 ~D~--vi~~GGDGT~l~a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 64 ADL--AVVVGGDGNMLGAARTLARYDINVIGINRG 96 (292)
T ss_dssp CSE--EEECSCHHHHHHHHHHHTTSSCEEEEBCSS
T ss_pred CCE--EEEEcCcHHHHHHHHHhhcCCCCEEEEECC
No 357
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=24.22 E-value=28 Score=30.07 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=24.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+++-. |.+ -..+|+.|.++||+|+++...
T Consensus 1 M~iiIiG~---G~~--G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGG---ETT--AYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEECC---HHH--HHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECC---CHH--HHHHHHHHHhCCCeEEEEECC
Confidence 56777743 433 457899999999999999864
No 358
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=24.17 E-value=82 Score=26.85 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=23.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLA-QRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~ 44 (492)
|||.++++ ++.|-+ =..++++|+ ++||+|+.+.-.
T Consensus 4 mmk~vlVt-Gasg~i--G~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 4 MYXYITIL-GAAGQI--AQXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp SCSEEEEE-STTSHH--HHHHHHHHHHHCCCEEEEEESS
T ss_pred eEEEEEEE-eCCcHH--HHHHHHHHHhcCCceEEEEecC
Confidence 56744444 333333 258899999 899999988754
No 359
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=24.15 E-value=2.7e+02 Score=24.59 Aligned_cols=32 Identities=28% Similarity=0.177 Sum_probs=23.7
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++++..+.| -=..+|++|+++|++|+++.-
T Consensus 11 k~vlVTGas~g---IG~~ia~~l~~~G~~V~~~~~ 42 (287)
T 3pxx_A 11 KVVLVTGGARG---QGRSHAVKLAEEGADIILFDI 42 (287)
T ss_dssp CEEEEETTTSH---HHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeCCCCh---HHHHHHHHHHHCCCeEEEEcc
Confidence 57777755432 235899999999999998864
No 360
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=23.94 E-value=50 Score=29.73 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=24.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+++-.+..| ..+|..|+++||+|+++...
T Consensus 1 m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 1 MKITVLGCGALG-----QLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEECcCHHH-----HHHHHHHHhCCCCEEEEEcC
Confidence 478888544444 37899999999999998653
No 361
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=23.94 E-value=38 Score=32.01 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=26.9
Q ss_pred CccEEEEecCCCcC-CH---HHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQG-HM---IPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~G-H~---~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+++||+++..+..+ |- .....+++.|.++||+|+.+..
T Consensus 2 ~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~ 43 (364)
T 2i87_A 2 TKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYI 43 (364)
T ss_dssp -CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEE
T ss_pred CCcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEE
Confidence 46789888754322 32 3447889999999999998864
No 362
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=23.93 E-value=97 Score=23.76 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHc-----CCCeEEEecch
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLP--YTAHIAGKF-----NIPRITFHGTC 149 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 149 (492)
....+.++. .+||+||.|...+ .+..+++.+ ++|.+.++...
T Consensus 34 ~~a~~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 34 EAAIAILEE--EWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp HHHHHHHHH--SCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCT
T ss_pred HHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCC
No 363
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=23.83 E-value=1.2e+02 Score=25.24 Aligned_cols=41 Identities=5% Similarity=-0.007 Sum_probs=25.5
Q ss_pred CCCccEEEEec-CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 4 QANQLHFVLFP-FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 4 ~~~~~~il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|.+..|++++- ..++= -.=+..-.+.|.+.|++|++++...
T Consensus 4 m~~t~~~v~il~~~gFe-~~E~~~p~~~l~~ag~~V~~~s~~~ 45 (177)
T 4hcj_A 4 MGKTNNILYVMSGQNFQ-DEEYFESKKIFESAGYKTKVSSTFI 45 (177)
T ss_dssp -CCCCEEEEECCSEEEC-HHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cccCCCEEEEECCCCcc-HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 44444555544 33332 2335566788889999999999754
No 364
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=23.83 E-value=2.5e+02 Score=27.13 Aligned_cols=141 Identities=8% Similarity=0.043 Sum_probs=71.9
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCC
Q 011142 279 PKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHP 358 (492)
Q Consensus 279 ~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~ 358 (492)
..+.|-|-+||.+ +-....+....++.++..+-..+.+-.. .|+...+ |+-+..- ...
T Consensus 264 ~~~~V~Ii~gs~S--D~~~~~~a~~~l~~~gi~~~v~V~saHR--------~p~~~~~-----------~~~~~~~-~g~ 321 (425)
T 2h31_A 264 SQCRVVVLMGSTS--DLGHCEKIKKACGNFGIPCELRVTSAHK--------GPDETLR-----------IKAEYEG-DGI 321 (425)
T ss_dssp CCCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCTTT--------CHHHHHH-----------HHHHHHT-TCC
T ss_pred CCCeEEEEecCcc--cHHHHHHHHHHHHHcCCceEEeeeeccC--------CHHHHHH-----------HHHHHHH-CCC
Confidence 3456777788866 4445666777777888776665544332 3332211 1111000 011
Q ss_pred -CccccccccCc----hhhHHHHhcCCCeeccCCccccchhHHH--HHHH--hccceeecccCCcccccccccccccCHH
Q 011142 359 -SIGGFLTHCGW----NSTIEGVSAGLPLLTWPLFGDQFMNEKL--VVQI--LKIGVKVGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 359 -~~~~~ItHgG~----~s~~Eal~~GvP~v~~P~~~DQ~~na~r--v~e~--~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
.+ +|.=+|. .++..++ .-+|+|.+|....-.....- ++ + .|+.+..-.. ..++.
T Consensus 322 ~~v--iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~G~daLls~v-qmp~g~pvatv~~-------------~~nAa 384 (425)
T 2h31_A 322 PTV--FVAVAGRSNGLGPVMSGN-TAYPVISCPPLTPDWGVQDVWSSL-RLPSGLGCSTVLS-------------PEGSA 384 (425)
T ss_dssp CEE--EEEECCSSCCHHHHHHHH-CSSCEEECCCCCTTTHHHHGGGTS-SCCSSCCCEECCC-------------HHHHH
T ss_pred CeE--EEEEcCcccchHhHHhcc-CCCCEEEeeCccccccHHHHHHHh-cCCCCCceEEecC-------------chHHH
Confidence 23 6666664 3555444 57999999975211111111 21 3 3444322111 24566
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHH
Q 011142 430 DVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAV 463 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~ 463 (492)
-++..|- -+.|+ ..+++.+..+......+
T Consensus 385 ~~A~~Il-~~~~~----~l~~kl~~~~~~~~~~v 413 (425)
T 2h31_A 385 QFAAQIF-GLSNH----LVWSKLRASILNTWISL 413 (425)
T ss_dssp HHHHHHH-HTTCH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-ccCCH----HHHHHHHHHHHHHHHHH
Confidence 6666665 34455 67777777666655443
No 365
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=23.70 E-value=76 Score=28.54 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=38.2
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHH--------HHhC-CCeEEEEeCCcchhhhhh
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARL--------LAQR-GVIITIVTTPVNAARFNG 52 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~--------L~~r-GH~Vt~~~~~~~~~~v~~ 52 (492)
++.||++.+.++-.|-....-++.- |... |++|+.++..--.+.+.+
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~ 174 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIK 174 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 4578999999999999999999987 9999 999999887544443433
No 366
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=23.70 E-value=42 Score=26.24 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=24.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+.||+++-. |.+- ..+++.|.+.|++|+++...
T Consensus 6 ~~~v~I~G~---G~iG--~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGL---GRFG--GSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECC---SHHH--HHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECC---CHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 457887743 4443 46789999999999988653
No 367
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.63 E-value=93 Score=26.72 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=33.6
Q ss_pred hhhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEE
Q 011142 268 HQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWV 315 (492)
Q Consensus 268 ~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~ 315 (492)
+-+.+|+.+...+.++||..+|......+.+..+.++|++++..+.+.
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 334556644445669999888765444567888999999999876654
No 368
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=23.52 E-value=97 Score=27.96 Aligned_cols=38 Identities=8% Similarity=-0.074 Sum_probs=27.5
Q ss_pred ccEEEEecCCC-cCCHH---HHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLA-QGHMI---PMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~-~GH~~---p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++||+++..+. .-|-. ....++++|.++||+|.++...
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 36898887543 22323 4468999999999999988765
No 369
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.51 E-value=77 Score=28.11 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=30.4
Q ss_pred CccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+++|++.+. -++-|=..-...||..|+ +|++|.++=...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 456776665 346888999999999999 999999986543
No 370
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=23.50 E-value=27 Score=32.18 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=24.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhC-----C-CeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQR-----G-VIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~r-----G-H~Vt~~~~ 43 (492)
+|||+|+-.+..| ..+|..|++. | |+|+++..
T Consensus 8 ~m~I~iiG~G~mG-----~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 8 PIKIAVFGLGGVG-----GYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CEEEEEECCSHHH-----HHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCEEEEECcCHHH-----HHHHHHHHhCccccCCCCCEEEEEc
Confidence 4799999555555 3668888888 9 99999875
No 371
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.42 E-value=1e+02 Score=22.33 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=22.3
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH-------cCCCeEEEecc
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK-------FNIPRITFHGT 148 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 148 (492)
.+++ .+||+||.|.... .+..+.+. -++|++.++..
T Consensus 40 ~l~~--~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 40 QLDL--LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHH--HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHh--cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 4445 5899999997543 33333322 46888877554
No 372
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=23.41 E-value=95 Score=28.21 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=29.7
Q ss_pred CccEEEEecCCCcCCHHH--HHHHHHHHHhCC-CeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIP--MIDIARLLAQRG-VIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p--~l~LA~~L~~rG-H~Vt~~~~~ 44 (492)
++.|||++. +..+|-.+ .-.|++.|.+.| ++|++...+
T Consensus 3 ~~~kvLiv~-G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 3 KPIKTLLIT-GQNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCEEEEEEE-SCCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CceEEEEEc-CCCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 578999995 44588654 367888888898 999999874
No 373
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.33 E-value=69 Score=26.42 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=24.5
Q ss_pred HHHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 110 NFFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 110 ~ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
+.+++ .+||+||.|...+ .+..+++. -++|++.++...
T Consensus 45 ~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 45 KLAGA--EKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHHTT--SCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHhh--CCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 34555 6899999997654 34444432 367887776553
No 374
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=23.15 E-value=44 Score=30.98 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcc
Q 011142 23 PMIDIARLLAQRGVIITIVTTPVN 46 (492)
Q Consensus 23 p~l~LA~~L~~rGH~Vt~~~~~~~ 46 (492)
.=.+||+.+.++|++|+|+..+..
T Consensus 67 mG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 67 RGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTS
T ss_pred HHHHHHHHHHHCCCEEEEEecCCC
Confidence 445789999999999999987643
No 375
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=23.11 E-value=42 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+.||+++-.+..| ..+|+.|.++||+|+++....
T Consensus 7 ~~~viIiG~G~~G-----~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVG-----SLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHH-----HHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHH-----HHHHHHHHHCCCCEEEEECCH
Confidence 3578888544333 478999999999999998753
No 376
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=23.10 E-value=67 Score=28.33 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCcEEEEcCCCc--cHHHHHHHcCCCeEEEe
Q 011142 108 VENFFAQLKPRPNCIISDMCLP--YTAHIAGKFNIPRITFH 146 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~ 146 (492)
++++++ .+||+||+..... ....--+..|||++.+.
T Consensus 52 ~E~i~~---l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 52 AEGILA---MKPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHHHHT---TCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc---cCCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 445554 5999999887653 23445567899999863
No 377
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=23.02 E-value=80 Score=30.85 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|..+| |.||+++- .|. -.+.+++++++.|++|+.+.+..
T Consensus 1 m~~~~-~k~ILI~g---~g~--~~~~i~~a~~~~G~~vv~v~~~~ 39 (461)
T 2dzd_A 1 METRR-IRKVLVAN---RGE--IAIRVFRACTELGIRTVAIYSKE 39 (461)
T ss_dssp --CCC-CSEEEECS---CHH--HHHHHHHHHHHHTCEEEEEECGG
T ss_pred CCCCc-CcEEEEEC---CcH--HHHHHHHHHHHcCCEEEEEECCc
Confidence 55554 45788873 232 25678999999999999887643
No 378
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=22.97 E-value=74 Score=28.39 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCc------cHHHHHHHcCCCeEEEecc
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLP------YTAHIAGKFNIPRITFHGT 148 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 148 (492)
..|.+++++ .+||+||+..... -+..+|..+|+|.+.....
T Consensus 103 ~~La~~i~~--~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 103 KILAAVARA--EGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHH--HTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHh--cCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 344555666 5799999876542 5788999999999986544
No 379
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=22.96 E-value=1e+02 Score=25.99 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=28.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
..++++.++..|...-+..+++.|+++|+.|..+-.
T Consensus 28 ~p~vv~~hG~~~~~~~~~~~~~~l~~~g~~v~~~d~ 63 (236)
T 1zi8_A 28 APVIVIAQDIFGVNAFMRETVSWLVDQGYAAVCPDL 63 (236)
T ss_dssp EEEEEEECCTTBSCHHHHHHHHHHHHTTCEEEEECG
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHhCCcEEEeccc
Confidence 345666667777777889999999999999877664
No 380
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=22.95 E-value=53 Score=32.41 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=26.0
Q ss_pred CCCccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeC
Q 011142 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTT 43 (492)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~ 43 (492)
|++||||.++-.+..| ..+|..|+++ ||+|+++..
T Consensus 2 M~~~mkI~VIG~G~mG-----~~lA~~La~~g~G~~V~~~d~ 38 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVG-----GPTCSVIAHMCPEIRVTVVDV 38 (467)
T ss_dssp CCCCCEEEEECCSTTH-----HHHHHHHHHHCTTSEEEEECS
T ss_pred CCCccEEEEECCCHHH-----HHHHHHHHhcCCCCEEEEEEC
Confidence 3456899999655554 4678889998 899998854
No 381
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=22.92 E-value=82 Score=28.68 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=23.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++++|++. ++.|-+- ..|+++|.++||+|+.+.-.
T Consensus 11 ~~~~vlVT--GatG~iG--~~l~~~L~~~G~~V~~~~r~ 45 (321)
T 2pk3_A 11 GSMRALIT--GVAGFVG--KYLANHLTEQNVEVFGTSRN 45 (321)
T ss_dssp --CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CcceEEEE--CCCChHH--HHHHHHHHHCCCEEEEEecC
Confidence 34566555 3444443 47899999999999998753
No 382
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=22.92 E-value=60 Score=32.22 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 106 EPVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 106 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
..+.+++++ .+||++|... ....+|+.+|||++.+
T Consensus 391 ~el~~~i~~--~~pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 391 RVLLKTVDE--YQADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHH--TTCSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHHh--cCCCEEEECC---chhHHHHHcCCCEEEe
Confidence 456677888 8999999864 3567899999999853
No 383
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=22.83 E-value=1.4e+02 Score=22.73 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=16.5
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK 137 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~ 137 (492)
.+++ .+||+||.|...+ .+..+++.
T Consensus 49 ~l~~--~~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 49 AYQN--RQFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHH--SCCSEEEECTTCCSSCHHHHHHH
T ss_pred HHhc--CCCCEEEEeCCCCCCcHHHHHHH
Confidence 4455 6899999998654 45544443
No 384
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=22.65 E-value=81 Score=27.74 Aligned_cols=36 Identities=3% Similarity=-0.083 Sum_probs=24.8
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+|.|.++++..+. - -=..||++|+++|++|+++.-.
T Consensus 20 ~m~k~vlITGas~-g--IG~~la~~l~~~G~~V~~~~r~ 55 (251)
T 3orf_A 20 HMSKNILVLGGSG-A--LGAEVVKFFKSKSWNTISIDFR 55 (251)
T ss_dssp --CCEEEEETTTS-H--HHHHHHHHHHHTTCEEEEEESS
T ss_pred ccCCEEEEECCCC-H--HHHHHHHHHHHCCCEEEEEeCC
Confidence 3557777775442 2 2358999999999999888753
No 385
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.63 E-value=78 Score=31.08 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
.+.+++++ .+||++|.+.. ...+|+.+|||++.+
T Consensus 376 ~l~~~i~~--~~pDl~ig~~~---~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 376 DVHQWIKN--EGVDLLISNTY---GKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHH--SCCSEEEESGG---GHHHHHHHTCCEEEC
T ss_pred HHHHHHHh--cCCCEEEeCcc---hHHHHHHcCCCEEEe
Confidence 46677777 79999998854 566889999999974
No 386
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=22.53 E-value=1.2e+02 Score=25.63 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=24.7
Q ss_pred HHHhcCCCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecch
Q 011142 111 FFAQLKPRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTC 149 (492)
Q Consensus 111 ll~~~~~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 149 (492)
.++. .+||+||.|...+ .+..+++. -++|++.++...
T Consensus 41 ~~~~--~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 84 (225)
T 1kgs_A 41 MALN--EPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALS 84 (225)
T ss_dssp HHHH--SCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred HHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4455 6899999998654 34444433 368888876654
No 387
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=22.51 E-value=1e+02 Score=24.07 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=22.4
Q ss_pred ccEEEEecCCCcCCHH--------HHHHHHHHHHhCCCeEE
Q 011142 7 QLHFVLFPFLAQGHMI--------PMIDIARLLAQRGVIIT 39 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~--------p~l~LA~~L~~rGH~Vt 39 (492)
+||.++++.|-.|... .+-..|..|.++||.+.
T Consensus 7 ~M~~IYIagPysg~~~n~~~~n~~~~~r~A~~l~~~G~ip~ 47 (125)
T 1t1j_A 7 HMRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAGHVVF 47 (125)
T ss_dssp CCCEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhheeEECCCCCCcchHHHHHHHHHHHHHHHHHHCCCeee
Confidence 5667777777766632 34556777889999654
No 388
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=22.44 E-value=78 Score=29.40 Aligned_cols=35 Identities=6% Similarity=-0.005 Sum_probs=25.0
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++++|+++ ++.|-+- ..|+++|.++||+|+.+.-.
T Consensus 26 ~~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 60 (352)
T 1sb8_A 26 QPKVWLIT--GVAGFIG--SNLLETLLKLDQKVVGLDNF 60 (352)
T ss_dssp SCCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEECC
T ss_pred cCCeEEEE--CCCcHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 45677666 3444432 47899999999999998753
No 389
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=22.40 E-value=82 Score=26.39 Aligned_cols=37 Identities=5% Similarity=-0.073 Sum_probs=24.0
Q ss_pred ccEEEEecCCCc---CCHHHHH-HHHHHHHhCC--CeEEEEeC
Q 011142 7 QLHFVLFPFLAQ---GHMIPMI-DIARLLAQRG--VIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~---GH~~p~l-~LA~~L~~rG--H~Vt~~~~ 43 (492)
||||+++..... |+..-+. .+++.|.++| ++|.++--
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 468877764433 6666554 3567777776 88887764
No 390
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.40 E-value=78 Score=24.94 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCCcEEEEcCCCc--cHHHHHHH-----cCCCeEEEecchH
Q 011142 117 PRPNCIISDMCLP--YTAHIAGK-----FNIPRITFHGTCC 150 (492)
Q Consensus 117 ~~pDlvI~D~~~~--~~~~~A~~-----lgiP~v~~~~~~~ 150 (492)
.+||+||.|.... .+..+++. -++|++.++....
T Consensus 46 ~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp TCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 6899999997654 34444433 3789888866543
No 391
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=22.23 E-value=1.3e+02 Score=26.07 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=30.6
Q ss_pred CccEEEEecCCCcC----CHHHHHHHHHHHHhCCCeEEEEeCC-cchhhh
Q 011142 6 NQLHFVLFPFLAQG----HMIPMIDIARLLAQRGVIITIVTTP-VNAARF 50 (492)
Q Consensus 6 ~~~~il~~~~~~~G----H~~p~l~LA~~L~~rGH~Vt~~~~~-~~~~~v 50 (492)
+|.+|.+++....+ +..-...|++.|+++|+.|..-... .....+
T Consensus 8 ~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa 57 (216)
T 1ydh_A 8 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLI 57 (216)
T ss_dssp SCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHH
T ss_pred CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHH
Confidence 35579998755543 2346788899999999998776665 433333
No 392
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=22.19 E-value=1.4e+02 Score=22.88 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=18.3
Q ss_pred HHHHHhcCCCCcEEEEcCCCc--cHHHHHHHc
Q 011142 109 ENFFAQLKPRPNCIISDMCLP--YTAHIAGKF 138 (492)
Q Consensus 109 ~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~l 138 (492)
.+.+++ .+||+||.|.... .+..+++.+
T Consensus 48 l~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 48 LKFLQH--NKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHH--CCCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHHh--CCCCEEEEecCCCCCCHHHHHHHH
Confidence 344555 6899999997654 455555543
No 393
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=22.16 E-value=57 Score=30.35 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=26.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.|||.|+-.+..| ..+|..|++.||+|++....
T Consensus 14 ~~kI~iIG~G~mG-----~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 14 EMRFFVLGAGSWG-----TVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 4789998655555 47899999999999988753
No 394
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=22.14 E-value=1.2e+02 Score=26.66 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=25.2
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|....+. |.++++..+ |-+ =..+|+.|+++|++|+++.-.
T Consensus 1 m~~~l~~-k~vlVTGas-~gI--G~~ia~~l~~~G~~V~~~~r~ 40 (263)
T 3ai3_A 1 MDMGISG-KVAVITGSS-SGI--GLAIAEGFAKEGAHIVLVARQ 40 (263)
T ss_dssp CCCCCTT-CEEEEESCS-SHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCCC-CEEEEECCC-chH--HHHHHHHHHHCCCEEEEEcCC
Confidence 4433333 455555333 322 358999999999999987653
No 395
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=22.13 E-value=88 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=24.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+|.++++.++. - -=..+|++|+++|++|.++.-.
T Consensus 2 ~k~vlITGas~-g--IG~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGASR-G--IGEAIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESCSS-H--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCc-H--HHHHHHHHHHHCCCEEEEEeCC
Confidence 45666664432 2 2358899999999999888753
No 396
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=22.06 E-value=1.2e+02 Score=27.81 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=29.4
Q ss_pred CCccEEEEecCCCcCC--H-HHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPFLAQGH--M-IPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH--~-~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.+|+|++++..|..|. . .-...+.+.|.++|+++.+..+..
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~ 49 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKE 49 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCS
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccC
Confidence 3477888888776443 2 334577888999999999887654
No 397
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=22.03 E-value=2.8e+02 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=24.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
-|+++++..+.| -=.++|++|+++|++|.+...
T Consensus 28 ~k~vlVTGas~g---IG~aia~~la~~G~~V~~~~~ 60 (269)
T 4dmm_A 28 DRIALVTGASRG---IGRAIALELAAAGAKVAVNYA 60 (269)
T ss_dssp TCEEEETTCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 367777755432 235789999999999988765
No 398
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=22.02 E-value=61 Score=32.23 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCccHHHHHHHcCCCeEEE
Q 011142 107 PVENFFAQLKPRPNCIISDMCLPYTAHIAGKFNIPRITF 145 (492)
Q Consensus 107 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 145 (492)
.+.+++++ .+||++|... ....+|+.+|||++.+
T Consensus 408 el~~~i~~--~~pDL~ig~~---~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 408 EFEEFVKR--IKPDLIGSGI---KEKFIFQKMGIPFREM 441 (492)
T ss_dssp HHHHHHHH--HCCSEEEECH---HHHHHHHHTTCCEEES
T ss_pred HHHHHHHh--cCCcEEEeCc---chhHHHHHcCCCEEec
Confidence 45667777 7999999973 3567899999999963
No 399
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=22.00 E-value=60 Score=28.70 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCcEEEEcCCCc-cHHHHHHHcCCCeEEEec
Q 011142 108 VENFFAQLKPRPNCIISDMCLP-YTAHIAGKFNIPRITFHG 147 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~v~~~~ 147 (492)
+++++. .+||+||+..... ......+..|||++.+..
T Consensus 53 ~E~i~~---l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 53 VEAVKK---LKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HHHHHH---TCCSEEEEEGGGHHHHHHHHHHHTSCCEEECC
T ss_pred HHHHHh---cCCCEEEecCccCHHHHHHHHHcCCcEEEecC
Confidence 444544 4999999865322 223455678999998643
No 400
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=21.95 E-value=76 Score=29.54 Aligned_cols=38 Identities=8% Similarity=-0.072 Sum_probs=22.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.+|.+.++|..|+-+....++..|.+-|.+|++++++.
T Consensus 169 l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~ 206 (324)
T 1js1_X 169 VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEG 206 (324)
T ss_dssp EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTT
T ss_pred EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcc
Confidence 45555555555654555555666666666666666654
No 401
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=21.94 E-value=35 Score=31.33 Aligned_cols=36 Identities=11% Similarity=0.011 Sum_probs=26.3
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+++.+|+++=.+..| +..|..|+++|++|+++-...
T Consensus 5 ~~~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~~ 40 (332)
T 3lzw_A 5 TKVYDITIIGGGPVG-----LFTAFYGGMRQASVKIIESLP 40 (332)
T ss_dssp EEEEEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSSS
T ss_pred CccceEEEECCCHHH-----HHHHHHHHHCCCCEEEEEcCC
Confidence 345678888544333 578888999999999997643
No 402
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=21.76 E-value=3.4e+02 Score=22.38 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=73.9
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCeEEEEeCCCcchhhhhccchhhHHHHhcCCCeeeecCCchhhcccCCC
Q 011142 280 KSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPS 359 (492)
Q Consensus 280 ~~~Vyvs~Gs~~~~~~~~~~~~~~a~~~~~~~vv~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~ 359 (492)
+|.|-|-+||.. +-....+....++.++..+-..+.+-.. .|+...+ |+-... -...+
T Consensus 6 ~~~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~SaHR--------~p~~~~~-----------~~~~a~-~~g~~ 63 (169)
T 3trh_A 6 KIFVAILMGSDS--DLSTMETAFTELKSLGIPFEAHILSAHR--------TPKETVE-----------FVENAD-NRGCA 63 (169)
T ss_dssp CCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCTTT--------SHHHHHH-----------HHHHHH-HTTEE
T ss_pred CCcEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcccC--------CHHHHHH-----------HHHHHH-hCCCc
Confidence 345777788866 4445666777778888777666554332 3332211 111000 01123
Q ss_pred ccccccccCch----hhHHHHhcCCCeeccCCcc-c--cchhHHHHHHH--hcccee-ecccCCcccccccccccccCHH
Q 011142 360 IGGFLTHCGWN----STIEGVSAGLPLLTWPLFG-D--QFMNEKLVVQI--LKIGVK-VGVESPMIWGEEQKIGVLMKRD 429 (492)
Q Consensus 360 ~~~~ItHgG~~----s~~Eal~~GvP~v~~P~~~-D--Q~~na~rv~e~--~G~G~~-l~~~~~~~~~~~~~~~~~~~~~ 429 (492)
+ +|.=+|.. ++.-+ ..-+|+|.+|... + -.+--.-++ + .|+.+. +..+ +.+..++.
T Consensus 64 V--iIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~dsLlS~v-qmp~GvPVatV~I~----------~a~~~nAa 129 (169)
T 3trh_A 64 V--FIAAAGLAAHLAGTIAA-HTLKPVIGVPMAGGSLGGLDALLSTV-QMPGGVPVACTAIG----------KAGAKNAA 129 (169)
T ss_dssp E--EEEEECSSCCHHHHHHH-TCSSCEEEEECCCSTTTTHHHHHHHH-CCCTTSCCEECCST----------HHHHHHHH
T ss_pred E--EEEECChhhhhHHHHHh-cCCCCEEEeecCCCCCCCHHHHHHhh-cCCCCCceEEEecC----------CccchHHH
Confidence 3 77777754 33333 3468999999863 2 222223332 4 343211 1111 00124555
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHH
Q 011142 430 DVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAV 463 (492)
Q Consensus 430 ~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~ 463 (492)
.++..|-.+ .|+ ..+++.+.+++..++.+
T Consensus 130 ~lAa~Il~~-~d~----~l~~kl~~~r~~~~~~v 158 (169)
T 3trh_A 130 ILAAQIIAL-QDK----SIAQKLVQQRTAKRETL 158 (169)
T ss_dssp HHHHHHHHT-TCH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCH----HHHHHHHHHHHHHHHHH
Confidence 666555443 455 78888888888777554
No 403
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=21.75 E-value=92 Score=31.12 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=31.1
Q ss_pred ccEEEEecCC---CcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFL---AQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
++|.+|++.+ +.|-=.-.-.|+.-|..||++||..=-
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~ 41 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKI 41 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEec
Confidence 4699999965 467778889999999999999999753
No 404
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=21.71 E-value=2.1e+02 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.050 Sum_probs=22.5
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVT 42 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 42 (492)
|+++++..+.| -=..+|+.|+++|++|....
T Consensus 6 k~vlVTGas~G---IG~aia~~L~~~G~~V~~~~ 36 (324)
T 3u9l_A 6 KIILITGASSG---FGRLTAEALAGAGHRVYASM 36 (324)
T ss_dssp CEEEESSCSSH---HHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcH---HHHHHHHHHHHCCCEEEEec
Confidence 56777754432 23589999999999998765
No 405
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=21.70 E-value=55 Score=30.54 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=27.1
Q ss_pred CccEEEEecCCCcC-CH---HHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQG-HM---IPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~G-H~---~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+++||+++..+..+ |- .....+++.|.+.||+|+.+..
T Consensus 2 ~~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~ 43 (343)
T 1e4e_A 2 NRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGI 43 (343)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEE
Confidence 36788888743222 22 2566789999999999998864
No 406
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=21.68 E-value=76 Score=29.33 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=23.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQR--GVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~ 43 (492)
|++|+++ ++.|.+- ..|+++|.++ ||+|+.+.-
T Consensus 4 m~~vlVT--GatG~iG--~~l~~~L~~~~~g~~V~~~~r 38 (348)
T 1oc2_A 4 FKNIIVT--GGAGFIG--SNFVHYVYNNHPDVHVTVLDK 38 (348)
T ss_dssp CSEEEEE--TTTSHHH--HHHHHHHHHHCTTCEEEEEEC
T ss_pred CcEEEEe--CCccHHH--HHHHHHHHHhCCCCEEEEEeC
Confidence 4577665 3444443 4688999998 899998875
No 407
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=21.63 E-value=1.2e+02 Score=24.42 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=24.0
Q ss_pred CCccEEEEecCCCcCCH-HHH-HHHHHHHHhCCCeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHM-IPM-IDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~-~p~-l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|++|||.+-+ -|. ..+ -.|.+.|.++||+|+=+++.
T Consensus 5 m~~mkI~igs----DhaG~~lK~~i~~~L~~~G~eV~D~G~~ 42 (148)
T 4em8_A 5 MVVKRVFLSS----DHAGVELRLFLSAYLRDLGCEVFDCGCD 42 (148)
T ss_dssp CSCSEEEEEE----CGGGHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred ceeeEEEEEE----CchhHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 3467888765 232 222 35678888999999877663
No 408
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=21.59 E-value=2.3e+02 Score=25.13 Aligned_cols=32 Identities=28% Similarity=0.161 Sum_probs=23.8
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++++..+.| -=.++|+.|+++|++|+++.-
T Consensus 12 k~~lVTGas~g---IG~aia~~la~~G~~V~~~~~ 43 (286)
T 3uve_A 12 KVAFVTGAARG---QGRSHAVRLAQEGADIIAVDI 43 (286)
T ss_dssp CEEEEESTTSH---HHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCeEEEEec
Confidence 67777755432 235899999999999998754
No 409
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=21.57 E-value=58 Score=30.05 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCCCCC--ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 1 MDTQAN--QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 1 m~~~~~--~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|++.++ +++|++. ++.|-+- ..|+++|.++||+|+.+.-
T Consensus 1 ~~~~~~~~~~~vlVT--GatGfIG--~~l~~~Ll~~G~~V~~~~r 41 (338)
T 2rh8_A 1 MATQHPIGKKTACVV--GGTGFVA--SLLVKLLLQKGYAVNTTVR 41 (338)
T ss_dssp --------CCEEEEE--CTTSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CCcCcCCCCCEEEEE--CCchHHH--HHHHHHHHHCCCEEEEEEc
Confidence 665544 2455544 3444443 3688999999999987653
No 410
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=21.56 E-value=86 Score=26.17 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=28.7
Q ss_pred CccEEEEecCCCcCCHHHHH-HHHHHHHh-CCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMI-DIARLLAQ-RGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l-~LA~~L~~-rGH~Vt~~~~~~ 45 (492)
.||||+++-....|+..-+. .+++.|.+ .|++|.++.-..
T Consensus 3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~ 44 (188)
T 2ark_A 3 AMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE 44 (188)
T ss_dssp CCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh
Confidence 36788888766678776544 46777777 899998886543
No 411
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=21.54 E-value=89 Score=30.91 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=28.4
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC-CC-eEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR-GV-IITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r-GH-~Vt~~~~~ 44 (492)
+++|||.++-.+..| +.+|..|++. || +|+++-..
T Consensus 16 ~~~mkIaVIGlG~mG-----~~lA~~la~~~G~~~V~~~D~~ 52 (478)
T 3g79_A 16 GPIKKIGVLGMGYVG-----IPAAVLFADAPCFEKVLGFQRN 52 (478)
T ss_dssp CSCCEEEEECCSTTH-----HHHHHHHHHSTTCCEEEEECCC
T ss_pred CCCCEEEEECcCHHH-----HHHHHHHHHhCCCCeEEEEECC
Confidence 557899999666666 4789999999 99 99998654
No 412
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.52 E-value=92 Score=28.46 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=31.4
Q ss_pred ccEEEEecC--CCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPF--LAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~--~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.+|+++++. ++.|-..-..+||..|+++|.+|.++-...
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456655553 578999999999999999999999986543
No 413
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=21.50 E-value=4.1e+02 Score=23.24 Aligned_cols=40 Identities=8% Similarity=-0.193 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEcCCCccH-HHHHHHcCCCeEEE
Q 011142 103 MLQEPVENFFAQLKPRPNCIISDMCLPYT-AHIAGKFNIPRITF 145 (492)
Q Consensus 103 ~~~~~l~~ll~~~~~~pDlvI~D~~~~~~-~~~A~~lgiP~v~~ 145 (492)
.+.+.++++-+ .++|+||.-=++..+ ..+-+.+++|++-+
T Consensus 57 ~l~~~~~~l~~---~g~d~iviaCnt~~~l~~lr~~~~iPvigi 97 (245)
T 3qvl_A 57 GVLEQIRAGRE---QGVDGHVIASFGDPGLLAARELAQGPVIGI 97 (245)
T ss_dssp HHHHHHHHHHH---HTCSEEEEC-CCCTTHHHHHHHCSSCEEEH
T ss_pred HHHHHHHHHHH---CCCCEEEEeCCChhHHHHHHHHcCCCEECc
Confidence 33444444433 389999966544433 34556689999864
No 414
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=21.45 E-value=1e+02 Score=28.90 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=20.8
Q ss_pred CCCccccccccCchhh---HHHHhcCCCeec
Q 011142 357 HPSIGGFLTHCGWNST---IEGVSAGLPLLT 384 (492)
Q Consensus 357 ~~~~~~~ItHgG~~s~---~Eal~~GvP~v~ 384 (492)
+|++ +|++||.-+. .-|-..|+|+++
T Consensus 92 ~PDv--Vi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 92 RPVC--VLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp CCSE--EEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred CCCE--EEEcCCcchHHHHHHHHHcCCCEEE
Confidence 6777 9999998664 556778999985
No 415
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=21.38 E-value=98 Score=28.76 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=29.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|.|++++..|..|.-.-...+.+.|.++|+++.+..+.
T Consensus 29 ~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~ 66 (332)
T 2bon_A 29 FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW 66 (332)
T ss_dssp -CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec
Confidence 56788888887665455667889999999999888764
No 416
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=21.35 E-value=1.9e+02 Score=24.21 Aligned_cols=39 Identities=5% Similarity=-0.050 Sum_probs=29.5
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
+++||+++..++..- .-+....+.|.+.|++|++++...
T Consensus 22 ~~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~ 60 (193)
T 1oi4_A 22 LSKKIAVLITDEFED-SEFTSPADEFRKAGHEVITIEKQA 60 (193)
T ss_dssp CCCEEEEECCTTBCT-HHHHHHHHHHHHTTCEEEEEESST
T ss_pred cCCEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 357899998876543 345567778888999999999754
No 417
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=21.28 E-value=73 Score=27.49 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=22.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
||+++++.++ |- -=..+|++|+++|++|.++.-.
T Consensus 1 Mk~vlVTGas-~g--IG~~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVITGAS-SG--LGAELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEESTT-SH--HHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEecCC-ch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4566666443 22 2358899999999999888753
No 418
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=21.27 E-value=92 Score=28.53 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=24.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+++||++. ++.|-+- ..|++.|.++||+|+.+.-.
T Consensus 13 ~~~~vlVT--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 47 (335)
T 1rpn_A 13 MTRSALVT--GITGQDG--AYLAKLLLEKGYRVHGLVAR 47 (335)
T ss_dssp --CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEECC
T ss_pred cCCeEEEE--CCCChHH--HHHHHHHHHCCCeEEEEeCC
Confidence 35777666 4445443 47899999999999998754
No 419
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=21.26 E-value=99 Score=28.38 Aligned_cols=34 Identities=3% Similarity=0.085 Sum_probs=24.7
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhC-C-CeEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQR-G-VIITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~r-G-H~Vt~~~~~ 44 (492)
|++|||+++..+.. ..|++.|++. | ++|..+...
T Consensus 2 m~~~~Ili~g~g~~------~~l~~~l~~~~~~~~v~~~d~~ 37 (331)
T 2pn1_A 2 MQKPHLLITSAGRR------AKLVEYFVKEFKTGRVSTADCS 37 (331)
T ss_dssp TTCCEEEEESCTTC------HHHHHHHHHHCCSSEEEEEESC
T ss_pred CccceEEEecCCch------HHHHHHHHHhcCCCEEEEEeCC
Confidence 34679999854443 4789999987 7 888887654
No 420
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=21.25 E-value=2.1e+02 Score=25.67 Aligned_cols=33 Identities=21% Similarity=0.051 Sum_probs=23.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+++++..+.| -=.++|++|+++|++|+++...
T Consensus 50 k~vlVTGas~G---IG~aia~~la~~G~~V~~~~~~ 82 (294)
T 3r3s_A 50 RKALVTGGDSG---IGRAAAIAYAREGADVAINYLP 82 (294)
T ss_dssp CEEEEETTTSH---HHHHHHHHHHHTTCEEEEECCG
T ss_pred CEEEEeCCCcH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 56777754432 2358999999999999887654
No 421
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=21.22 E-value=87 Score=28.33 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=22.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|||++. ++.|.+- ..|++.|.++||+|+.+.-
T Consensus 1 m~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~r 32 (312)
T 3ko8_A 1 MRIVVT--GGAGFIG--SHLVDKLVELGYEVVVVDN 32 (312)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEECC
T ss_pred CEEEEE--CCCChHH--HHHHHHHHhCCCEEEEEeC
Confidence 466655 3444443 3789999999999998864
No 422
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=21.21 E-value=2.6e+02 Score=24.46 Aligned_cols=34 Identities=26% Similarity=0.145 Sum_probs=24.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.|.++++..+. -+ =..+|++|+++|++|+++...
T Consensus 26 ~k~vlVTGas~-gI--G~~la~~l~~~G~~v~i~~~r 59 (267)
T 4iiu_A 26 SRSVLVTGASK-GI--GRAIARQLAADGFNIGVHYHR 59 (267)
T ss_dssp CCEEEETTTTS-HH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCCC-hH--HHHHHHHHHHCCCEEEEEeCC
Confidence 46777775442 22 358999999999999887653
No 423
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=21.14 E-value=1.4e+02 Score=25.78 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCCCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 1 MDTQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|+..++. |.++++. +.|-+ =..++++|+++|++|+++.-.
T Consensus 1 m~~~~~~-~~vlVtG-asggi--G~~la~~l~~~G~~V~~~~r~ 40 (248)
T 2pnf_A 1 MEIKLQG-KVSLVTG-STRGI--GRAIAEKLASAGSTVIITGTS 40 (248)
T ss_dssp CCCCCTT-CEEEETT-CSSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CccccCC-CEEEEEC-CCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 5543333 4455553 33322 357899999999999988753
No 424
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Probab=21.13 E-value=1.2e+02 Score=26.19 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=26.9
Q ss_pred EEEEecCCCcCC--HHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGH--MIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH--~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
..+++.++..|+ ..-+..+++.|.++|++|..+--
T Consensus 28 p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~ 64 (251)
T 2wtm_A 28 PLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADM 64 (251)
T ss_dssp EEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecC
Confidence 456666677777 66778899999999999877654
No 425
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=21.11 E-value=93 Score=26.57 Aligned_cols=37 Identities=3% Similarity=-0.085 Sum_probs=23.2
Q ss_pred ccEEEEecCCCcC---CHHHH-HHHHHHHHhC--CCeEEEEeC
Q 011142 7 QLHFVLFPFLAQG---HMIPM-IDIARLLAQR--GVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~G---H~~p~-l~LA~~L~~r--GH~Vt~~~~ 43 (492)
||||+++...-.+ +..-+ ..+++.|.++ ||+|.++--
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 5788777644333 33333 3456777776 899888754
No 426
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.08 E-value=1.3e+02 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcEEEEcCCCc--cHHHHHHH----cCCCeEEEecch
Q 011142 108 VENFFAQLKPRPNCIISDMCLP--YTAHIAGK----FNIPRITFHGTC 149 (492)
Q Consensus 108 l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~----lgiP~v~~~~~~ 149 (492)
..+.++. .+||+||.|...+ .+..+++. -++|++.++...
T Consensus 73 al~~~~~--~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 73 GLIKARE--DHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHH--SCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 3445566 6899999998765 34444433 368888775543
No 427
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=21.06 E-value=97 Score=19.92 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=32.4
Q ss_pred cccccCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 011142 422 IGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDIMK 482 (492)
Q Consensus 422 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (492)
+++.++.+++...+..+-.. -....+.+.++.. +..++..-..++|+.-+..
T Consensus 13 ~~G~i~~~e~~~~l~~~~~~--------~~~~~~~~~~~~~-D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 13 GDGAVSYEEVKAFVSKKRAI--------KNEQLLQLIFKSI-DADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp CSSSCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-CTTCSSSCCHHHHHHHHTC
T ss_pred CCCcccHHHHHHHHHHccCC--------CcHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHh
Confidence 45689999999888876321 1223455555544 5555556677777776543
No 428
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=21.04 E-value=1.2e+02 Score=27.84 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=23.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
.|.++++..+ |-+ -..||++|+++|++|.++.-.
T Consensus 8 ~k~vlVTGas-~gI--G~~la~~l~~~G~~Vv~~~r~ 41 (319)
T 3ioy_A 8 GRTAFVTGGA-NGV--GIGLVRQLLNQGCKVAIADIR 41 (319)
T ss_dssp TCEEEEETTT-STH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEcCCc-hHH--HHHHHHHHHHCCCEEEEEECC
Confidence 3566666444 323 357899999999999887653
No 429
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Probab=21.04 E-value=1.3e+02 Score=25.88 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=27.4
Q ss_pred cEEEEecCCCcCC--HHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGH--MIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH--~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
..++++.++..|+ ...+..+++.|.++|+.|..+-.+
T Consensus 46 ~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 84 (270)
T 3pfb_A 46 YDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFN 84 (270)
T ss_dssp EEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccc
Confidence 3455566666655 666889999999999998877654
No 430
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.96 E-value=86 Score=26.58 Aligned_cols=37 Identities=5% Similarity=0.066 Sum_probs=23.1
Q ss_pred ccEEEEec-CCC---cCCHHHHH-HHHHHHHhCC--CeEEEEeC
Q 011142 7 QLHFVLFP-FLA---QGHMIPMI-DIARLLAQRG--VIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~-~~~---~GH~~p~l-~LA~~L~~rG--H~Vt~~~~ 43 (492)
||||+++. ++- .|+..-+. .+++.|.++| ++|.++--
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL 44 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDV 44 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeC
Confidence 46887766 333 26555544 4567777777 88888754
No 431
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=20.95 E-value=1.3e+02 Score=25.51 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=29.5
Q ss_pred ccEEEEecCCCcCC----HHHHHHHHHHHHhCCCeEEEEeCC-cchhhh
Q 011142 7 QLHFVLFPFLAQGH----MIPMIDIARLLAQRGVIITIVTTP-VNAARF 50 (492)
Q Consensus 7 ~~~il~~~~~~~GH----~~p~l~LA~~L~~rGH~Vt~~~~~-~~~~~v 50 (492)
+++|.+++... +. ..-...|++.|+++|+.|..-..+ .....+
T Consensus 13 ~~~I~Vfg~s~-~~~~~~~~~A~~lg~~la~~g~~lv~GGG~~GlM~a~ 60 (189)
T 3sbx_A 13 RWTVAVYCAAA-PTHPELLELAGAVGAAIAARGWTLVWGGGHVSAMGAV 60 (189)
T ss_dssp CCEEEEECCSS-CCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHH
T ss_pred CeEEEEEEeCC-CCChHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHH
Confidence 47899888655 43 334678888999999988776554 433333
No 432
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=20.85 E-value=1.1e+02 Score=26.76 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=22.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
||.++++..+ |- -=..+|+.|+++|++|+++.-
T Consensus 1 mk~vlVTGas-~g--IG~~~a~~l~~~G~~V~~~~r 33 (257)
T 1fjh_A 1 MSIIVISGCA-TG--IGAATRKVLEAAGHQIVGIDI 33 (257)
T ss_dssp CCEEEEETTT-SH--HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCC-CH--HHHHHHHHHHHCCCEEEEEeC
Confidence 3555666433 32 235789999999999988764
No 433
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=20.84 E-value=28 Score=34.40 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=26.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
..|||+++-.+-.| ..||+.|.+.||+|+++-..
T Consensus 2 ~~M~iiI~G~G~vG-----~~la~~L~~~~~~v~vId~d 35 (461)
T 4g65_A 2 NAMKIIILGAGQVG-----GTLAENLVGENNDITIVDKD 35 (461)
T ss_dssp CCEEEEEECCSHHH-----HHHHHHTCSTTEEEEEEESC
T ss_pred CcCEEEEECCCHHH-----HHHHHHHHHCCCCEEEEECC
Confidence 36899998555444 36899999999999998654
No 434
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=20.82 E-value=1.2e+02 Score=22.79 Aligned_cols=34 Identities=6% Similarity=0.025 Sum_probs=22.2
Q ss_pred cCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHhcCC
Q 011142 426 MKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGG 467 (492)
Q Consensus 426 ~~~~~l~~ai~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~gg 467 (492)
++++++.+....+- ..+.++.-|.+++..+ .+|+
T Consensus 3 ~~~eq~~k~~~el~-------~v~~n~~lL~EML~~~-~p~~ 36 (103)
T 1wrd_A 3 LGSEQIGKLRSELE-------MVSGNVRVMSEMLTEL-VPTQ 36 (103)
T ss_dssp SSSTTHHHHHHHHH-------HHHHHHHHHHHHHHHS-CTTT
T ss_pred CCHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc-CCCC
Confidence 56666665554443 6777888888887765 5554
No 435
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=20.74 E-value=99 Score=28.43 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=24.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
+||+|+++ ++.|-+- ..|+++|.++||+|+.+.-.
T Consensus 20 ~~~~vlVT--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 20 HMKKVFIT--GICGQIG--SHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp -CCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEe--CCccHHH--HHHHHHHHHCCCEEEEEECC
Confidence 45677666 3334332 47889999999999998753
No 436
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=20.66 E-value=3.1e+02 Score=23.66 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=23.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
.|.++++..+. - -=.++|++|+++|++|+++..
T Consensus 4 ~k~~lVTGas~-g--IG~~ia~~l~~~G~~V~~~~~ 36 (246)
T 3osu_A 4 TKSALVTGASR-G--IGRSIALQLAEEGYNVAVNYA 36 (246)
T ss_dssp SCEEEETTCSS-H--HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCC-h--HHHHHHHHHHHCCCEEEEEeC
Confidence 36777774442 2 235889999999999988765
No 437
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A
Probab=20.64 E-value=75 Score=26.92 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=27.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+.+++.++..|+..-+..+++.|.++|+.|..+-.
T Consensus 23 ~~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~ 57 (251)
T 3dkr_A 23 TGVVLLHAYTGSPNDMNFMARALQRSGYGVYVPLF 57 (251)
T ss_dssp EEEEEECCTTCCGGGGHHHHHHHHHTTCEEEECCC
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 45666677778888889999999999998876544
No 438
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=20.55 E-value=88 Score=29.62 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=24.2
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
..+++|++. ++.|-+- ..|+++|+++||+|+.+.-
T Consensus 9 ~~~~~vlVT--G~tGfIG--~~l~~~L~~~G~~V~~~~r 43 (404)
T 1i24_A 9 HHGSRVMVI--GGDGYCG--WATALHLSKKNYEVCIVDN 43 (404)
T ss_dssp ---CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEEC
T ss_pred cCCCeEEEe--CCCcHHH--HHHHHHHHhCCCeEEEEEe
Confidence 456788876 4455443 4678999999999998864
No 439
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=20.53 E-value=54 Score=30.63 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=25.0
Q ss_pred CCccEEEEecCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCC
Q 011142 5 ANQLHFVLFPFLAQGHMIPMIDIARLLAQRGV-IITIVTTP 44 (492)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~ 44 (492)
+++|||.++-. |++--. ||..|+..|| +|+++-..
T Consensus 7 ~~~~kI~VIGa---G~vG~~--lA~~la~~g~~~V~L~D~~ 42 (331)
T 1pzg_A 7 QRRKKVAMIGS---GMIGGT--MGYLCALRELADVVLYDVV 42 (331)
T ss_dssp SCCCEEEEECC---SHHHHH--HHHHHHHHTCCEEEEECSS
T ss_pred CCCCEEEEECC---CHHHHH--HHHHHHhCCCCeEEEEECC
Confidence 33579998843 555443 8899999999 97777543
No 440
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=20.53 E-value=83 Score=27.77 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=30.6
Q ss_pred ccEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFP--FLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~--~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
++|++.+. -++-|-..-...||..|+++|++|.++=...
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45555554 4468888999999999999999999986543
No 441
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=20.52 E-value=53 Score=30.27 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=25.1
Q ss_pred CCCCccEEEEecCCCcCCHHHHHHHHHHHHhCCC--eEEEEeCC
Q 011142 3 TQANQLHFVLFPFLAQGHMIPMIDIARLLAQRGV--IITIVTTP 44 (492)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH--~Vt~~~~~ 44 (492)
+..++|||+++-. |.+--. +|..|++.|| +|+++...
T Consensus 3 ~~~~~mkI~IiGa---G~vG~~--~a~~l~~~g~~~~V~l~d~~ 41 (319)
T 1lld_A 3 TTVKPTKLAVIGA---GAVGST--LAFAAAQRGIAREIVLEDIA 41 (319)
T ss_dssp ----CCEEEEECC---SHHHHH--HHHHHHHTTCCSEEEEECSS
T ss_pred cCCCCCEEEEECC---CHHHHH--HHHHHHhCCCCCEEEEEeCC
Confidence 3445689999843 555443 7778999999 99988764
No 442
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=20.40 E-value=1e+02 Score=28.90 Aligned_cols=34 Identities=6% Similarity=-0.231 Sum_probs=25.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|.||+++..+ .....++++|+++||+|.++.+..
T Consensus 1 M~~Ililg~g-----~~~~~~~~a~~~~G~~v~~~~~~~ 34 (365)
T 2z04_A 1 MLTVGILGGG-----QLGWMTILEGRKLGFKFHVLEDKE 34 (365)
T ss_dssp -CEEEEECCS-----HHHHHHHHHHGGGTCEEEEECSSS
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4578888533 446788999999999999887643
No 443
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=20.39 E-value=1e+02 Score=27.90 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=23.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
|||+++ ++.|-+- ..|++.|.++||+|+.++-.
T Consensus 3 ~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 3 LKIAVT--GGTGFLG--QYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHhCCCEEEEEeCC
Confidence 567666 3444433 36789999999999998764
No 444
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=20.38 E-value=1.1e+02 Score=27.26 Aligned_cols=34 Identities=18% Similarity=0.001 Sum_probs=24.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 8 LHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
-|.++++..+.| -=.++|++|+++|++|+++.-.
T Consensus 30 ~k~vlVTGas~G---IG~aia~~l~~~G~~Vi~~~r~ 63 (281)
T 3ppi_A 30 GASAIVSGGAGG---LGEATVRRLHADGLGVVIADLA 63 (281)
T ss_dssp TEEEEEETTTSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeCC
Confidence 367777755433 2358999999999999887653
No 445
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=20.37 E-value=1.3e+02 Score=28.36 Aligned_cols=34 Identities=3% Similarity=-0.163 Sum_probs=25.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
|.||+++-.+ ..-..++++|++.||+|.++.+..
T Consensus 1 M~~Ililg~g-----~~g~~~~~a~~~~G~~v~~~~~~~ 34 (380)
T 3ax6_A 1 MKKIGIIGGG-----QLGKMMTLEAKKMGFYVIVLDPTP 34 (380)
T ss_dssp CCEEEEECCS-----HHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3578888643 235678888999999999888743
No 446
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=20.36 E-value=96 Score=26.13 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=24.8
Q ss_pred ccEEEEecCCC--cCCHHHHHH-HHHH-HHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLA--QGHMIPMID-IARL-LAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~--~GH~~p~l~-LA~~-L~~rGH~Vt~~~~ 43 (492)
||||+++.... .|+..-+.. +++. |.++|++|.++--
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl 42 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHV 42 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 57888777443 466655554 4566 7788998887753
No 447
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=20.30 E-value=63 Score=27.85 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=23.1
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
++|||+++- .|.+- ..+|+.|++.||+|+++..
T Consensus 27 ~~~~I~iiG---~G~~G--~~la~~l~~~g~~V~~~~r 59 (215)
T 2vns_A 27 EAPKVGILG---SGDFA--RSLATRLVGSGFKVVVGSR 59 (215)
T ss_dssp --CCEEEEC---CSHHH--HHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEc---cCHHH--HHHHHHHHHCCCEEEEEeC
Confidence 467898884 34333 3678899999999988764
No 448
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=20.26 E-value=82 Score=29.10 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=23.4
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTP 44 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 44 (492)
++++|+++ ++.|.+- ..|++.|.++||+|+.+.-.
T Consensus 18 ~~~~vlVt--GatG~iG--~~l~~~L~~~G~~V~~~~r~ 52 (347)
T 4id9_A 18 GSHMILVT--GSAGRVG--RAVVAALRTQGRTVRGFDLR 52 (347)
T ss_dssp ---CEEEE--TTTSHHH--HHHHHHHHHTTCCEEEEESS
T ss_pred CCCEEEEE--CCCChHH--HHHHHHHHhCCCEEEEEeCC
Confidence 34667666 4455444 36889999999999998753
No 449
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=20.19 E-value=1e+02 Score=28.22 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=24.6
Q ss_pred CccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 6 NQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+.|+|++. ++.|.+- ..|+++|+++||+|+.+.-
T Consensus 19 ~~~~vlVT--GasG~iG--~~l~~~L~~~g~~V~~~~r 52 (330)
T 2pzm_A 19 SHMRILIT--GGAGCLG--SNLIEHWLPQGHEILVIDN 52 (330)
T ss_dssp TCCEEEEE--TTTSHHH--HHHHHHHGGGTCEEEEEEC
T ss_pred CCCEEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEEC
Confidence 34677666 3444443 5789999999999998875
No 450
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A
Probab=20.18 E-value=86 Score=27.62 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=25.4
Q ss_pred cEEEEecCCCcCCH--HHHHHHHHHHHhCCCeEEEEeCCc
Q 011142 8 LHFVLFPFLAQGHM--IPMIDIARLLAQRGVIITIVTTPV 45 (492)
Q Consensus 8 ~~il~~~~~~~GH~--~p~l~LA~~L~~rGH~Vt~~~~~~ 45 (492)
.-++++.+++.+|- ..+..+|+.|+++|+.|..+-.+.
T Consensus 56 ~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG 95 (259)
T 4ao6_A 56 DRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPG 95 (259)
T ss_dssp SEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC
T ss_pred CCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCC
Confidence 45778888877774 357889999999999988876543
No 451
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=20.18 E-value=2.4e+02 Score=24.69 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=24.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 9 ~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
|+++++..+.+ --==.++|+.|+++|++|.+..-
T Consensus 7 K~alVTGaa~~-~GIG~aiA~~la~~Ga~Vvi~~r 40 (256)
T 4fs3_A 7 KTYVIMGIANK-RSIAFGVAKVLDQLGAKLVFTYR 40 (256)
T ss_dssp CEEEEECCCST-TCHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCC-chHHHHHHHHHHHCCCEEEEEEC
Confidence 67888753321 11236899999999999998865
No 452
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=20.14 E-value=96 Score=27.18 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=24.7
Q ss_pred ccEEEEecCCC--cCCHHHHHH-HHHHHHhC-CCeEEEEeC
Q 011142 7 QLHFVLFPFLA--QGHMIPMID-IARLLAQR-GVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~--~GH~~p~l~-LA~~L~~r-GH~Vt~~~~ 43 (492)
||||+++.... .|+..-+.. +++.|.++ |++|.++..
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl 41 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTP 41 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46888776443 266665544 56777777 999987753
No 453
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=20.04 E-value=4.7e+02 Score=30.44 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhhhHHHhhhhcCCceEEEEecCCccccCCCCCCCcccccc
Q 011142 10 FVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVA 89 (492)
Q Consensus 10 il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (492)
+++.-.|+.|-..-++.++...+++|..|.|++.+...+.+... .+--.........
T Consensus 386 ilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~-----------------------~lGvd~~~L~i~~ 442 (1706)
T 3cmw_A 386 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR-----------------------KLGVDIDNLLCSQ 442 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHH-----------------------HTTCCGGGCEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHH-----------------------HcCCCHHHeEEcC
Q ss_pred ccchHHHHHHHHhhhhHHHHHHHHhcCCCCcEEEEcCCCccH----------------------------HHHHHHcCCC
Q 011142 90 SLGLAFDFFTAADMLQEPVENFFAQLKPRPNCIISDMCLPYT----------------------------AHIAGKFNIP 141 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~----------------------------~~~A~~lgiP 141 (492)
.... ......+..++++ .++|+||.|+..... ..+|+.+|+|
T Consensus 443 ~~~~--------e~~l~~l~~lv~~--~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~ 512 (1706)
T 3cmw_A 443 PDTG--------EQALEICDALARS--GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 512 (1706)
T ss_dssp CSSH--------HHHHHHHHHHHHH--TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCH--------HHHHHHHHHHHHh--cCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCE
Q ss_pred eEEEe
Q 011142 142 RITFH 146 (492)
Q Consensus 142 ~v~~~ 146 (492)
++.+.
T Consensus 513 VI~in 517 (1706)
T 3cmw_A 513 LIFIN 517 (1706)
T ss_dssp EEEEE
T ss_pred EEEEe
No 454
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=20.03 E-value=70 Score=29.17 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=23.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011142 7 QLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTT 43 (492)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 43 (492)
+|||+++ ++.|.+- ..|+++|.++||+|+.+..
T Consensus 3 ~~~ilVt--GatG~iG--~~l~~~L~~~g~~v~~~~r 35 (321)
T 1e6u_A 3 KQRVFIA--GHRGMVG--SAIRRQLEQRGDVELVLRT 35 (321)
T ss_dssp CEEEEEE--TTTSHHH--HHHHHHHTTCTTEEEECCC
T ss_pred CCEEEEE--CCCcHHH--HHHHHHHHhCCCeEEEEec
Confidence 4677666 4455443 3678999999999888653
Done!