Query 011143
Match_columns 492
No_of_seqs 289 out of 2230
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 1.7E-54 3.7E-59 458.9 34.2 284 29-317 63-356 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 2.1E-51 4.6E-56 418.4 32.2 277 83-465 1-278 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 4.8E-51 1E-55 414.5 30.5 232 79-310 1-232 (317)
4 cd05478 pepsin_A Pepsin A, asp 100.0 1.9E-50 4.1E-55 410.1 31.6 275 79-462 1-275 (317)
5 cd05486 Cathespin_E Cathepsin 100.0 1.1E-50 2.4E-55 411.6 29.4 267 89-463 1-267 (316)
6 cd05485 Cathepsin_D_like Cathe 100.0 4.2E-50 9E-55 409.7 31.7 281 79-466 2-283 (329)
7 cd05487 renin_like Renin stimu 100.0 6.3E-50 1.4E-54 407.9 32.2 276 81-464 1-277 (326)
8 cd05488 Proteinase_A_fungi Fun 100.0 9.2E-50 2E-54 405.6 31.1 274 79-462 1-274 (320)
9 cd05477 gastricsin Gastricsins 100.0 2.1E-49 4.6E-54 402.5 31.3 270 86-462 1-270 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 1.8E-48 3.9E-53 410.1 32.0 235 74-317 125-361 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.9E-47 1.3E-51 397.9 31.3 235 74-317 124-360 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 8.5E-45 1.8E-49 367.0 24.1 270 88-466 1-271 (317)
13 KOG1339 Aspartyl protease [Pos 100.0 8.8E-43 1.9E-47 364.4 28.0 284 77-472 35-356 (398)
14 cd06097 Aspergillopepsin_like 100.0 3.4E-42 7.4E-47 343.2 26.3 219 89-315 1-225 (278)
15 cd05473 beta_secretase_like Be 100.0 5.4E-41 1.2E-45 347.2 28.3 223 87-317 2-240 (364)
16 PLN03146 aspartyl protease fam 100.0 1.7E-40 3.6E-45 349.7 31.9 217 85-317 81-336 (431)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 5E-40 1.1E-44 335.0 25.2 215 87-312 2-255 (326)
18 cd05474 SAP_like SAPs, pepsin- 100.0 6.7E-39 1.5E-43 321.6 26.7 233 88-463 2-248 (295)
19 cd05471 pepsin_like Pepsin-lik 100.0 3.2E-38 7E-43 313.4 29.4 227 89-317 1-231 (283)
20 cd05472 cnd41_like Chloroplast 100.0 1.3E-38 2.8E-43 320.7 24.5 191 88-317 1-200 (299)
21 cd05476 pepsin_A_like_plant Ch 100.0 4.7E-36 1E-40 297.1 22.5 177 88-304 1-192 (265)
22 cd05475 nucellin_like Nucellin 100.0 5.6E-35 1.2E-39 290.7 27.0 184 87-305 1-194 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 2E-32 4.3E-37 282.4 24.5 212 95-317 2-258 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 7.4E-22 1.6E-26 168.8 12.4 108 91-199 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.8 2.5E-20 5.4E-25 171.5 16.5 136 89-247 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.0 6.2E-10 1.3E-14 102.1 8.4 119 267-474 1-128 (161)
27 PF05184 SapB_1: Saposin-like 98.1 2E-06 4.2E-11 59.4 2.6 38 386-423 2-39 (39)
28 cd05483 retropepsin_like_bacte 97.9 3.1E-05 6.8E-10 63.7 7.3 92 88-201 2-94 (96)
29 TIGR02281 clan_AA_DTGA clan AA 97.2 0.0028 6E-08 55.3 9.1 101 79-201 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.5 0.016 3.5E-07 46.7 8.4 88 91-200 1-89 (90)
31 PF11925 DUF3443: Protein of u 95.3 0.22 4.7E-06 51.0 11.7 195 90-305 25-272 (370)
32 cd05479 RP_DDI RP_DDI; retrope 95.0 0.16 3.5E-06 44.3 8.9 92 85-201 13-107 (124)
33 smart00741 SapB Saposin (B) Do 94.0 0.058 1.3E-06 41.9 3.3 47 387-436 2-48 (76)
34 cd05484 retropepsin_like_LTR_2 93.3 0.39 8.4E-06 39.2 7.3 75 89-181 1-78 (91)
35 COG3577 Predicted aspartyl pro 93.2 0.57 1.2E-05 44.1 8.9 91 75-180 92-183 (215)
36 PF03489 SapB_2: Saposin-like 91.2 0.053 1.1E-06 36.2 -0.3 33 323-355 3-35 (35)
37 cd06095 RP_RTVL_H_like Retrope 90.6 1.5 3.3E-05 35.4 7.8 81 92-201 2-84 (86)
38 PF07966 A1_Propeptide: A1 Pro 90.1 0.14 3.1E-06 32.7 1.0 24 30-53 1-24 (29)
39 PF13975 gag-asp_proteas: gag- 82.4 2.3 5E-05 33.2 4.3 33 86-120 6-38 (72)
40 TIGR02281 clan_AA_DTGA clan AA 81.0 3.1 6.8E-05 36.0 5.1 37 264-310 8-44 (121)
41 KOG1340 Prosaposin [Lipid tran 79.5 1.9 4.1E-05 41.4 3.4 98 323-438 78-177 (218)
42 PF13650 Asp_protease_2: Aspar 78.5 2.5 5.5E-05 33.5 3.5 29 275-310 3-31 (90)
43 PF13975 gag-asp_proteas: gag- 75.9 4.2 9.2E-05 31.7 4.0 30 274-310 12-41 (72)
44 cd05484 retropepsin_like_LTR_2 74.0 4.3 9.4E-05 32.9 3.7 31 274-311 4-34 (91)
45 PF00077 RVP: Retroviral aspar 72.5 5.6 0.00012 32.7 4.1 29 90-120 7-35 (100)
46 cd05483 retropepsin_like_bacte 68.5 7.6 0.00017 31.1 4.1 30 274-310 6-35 (96)
47 cd06095 RP_RTVL_H_like Retrope 67.0 6.2 0.00013 31.8 3.1 29 275-310 3-31 (86)
48 cd05479 RP_DDI RP_DDI; retrope 60.2 9.8 0.00021 33.0 3.4 29 275-310 21-49 (124)
49 PF07172 GRP: Glycine rich pro 57.3 5.9 0.00013 32.9 1.3 8 1-8 1-8 (95)
50 PF09668 Asp_protease: Asparty 53.3 28 0.0006 30.5 4.9 90 87-200 23-114 (124)
51 cd05482 HIV_retropepsin_like R 52.8 17 0.00038 29.6 3.4 27 92-120 2-28 (87)
52 COG3577 Predicted aspartyl pro 51.9 28 0.00061 33.0 5.1 38 265-312 103-140 (215)
53 PF12384 Peptidase_A2B: Ty3 tr 47.9 22 0.00048 32.6 3.5 29 90-118 34-62 (177)
54 PF08284 RVP_2: Retroviral asp 47.2 1.2E+02 0.0026 26.7 8.2 30 87-118 20-49 (135)
55 PF00077 RVP: Retroviral aspar 46.4 16 0.00034 29.9 2.3 27 274-307 9-35 (100)
56 cd05481 retropepsin_like_LTR_1 42.8 26 0.00057 28.7 3.1 23 289-311 11-33 (93)
57 TIGR03698 clan_AA_DTGF clan AA 41.4 19 0.0004 30.5 2.0 23 288-310 16-39 (107)
58 PF09668 Asp_protease: Asparty 41.1 30 0.00066 30.2 3.3 30 274-310 28-57 (124)
59 smart00741 SapB Saposin (B) Do 38.2 10 0.00023 28.8 -0.0 37 319-355 40-76 (76)
60 PRK02710 plastocyanin; Provisi 37.3 43 0.00093 28.8 3.7 35 1-35 1-35 (119)
61 PF14201 DUF4318: Domain of un 32.6 74 0.0016 25.2 3.9 46 406-458 15-60 (74)
62 COG5550 Predicted aspartyl pro 30.0 31 0.00068 30.0 1.6 22 291-312 29-51 (125)
63 cd05470 pepsin_retropepsin_lik 29.4 43 0.00094 27.5 2.4 20 287-306 10-29 (109)
64 KOG0141 Isovaleryl-CoA dehydro 27.6 1.4E+02 0.0031 30.3 5.8 22 399-420 133-154 (421)
65 TIGR03698 clan_AA_DTGF clan AA 22.0 1E+02 0.0022 25.9 3.3 66 91-172 2-73 (107)
66 cd05471 pepsin_like Pepsin-lik 21.1 1.3E+02 0.0027 29.2 4.3 44 77-120 170-221 (283)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.7e-54 Score=458.93 Aligned_cols=284 Identities=36% Similarity=0.634 Sum_probs=234.8
Q ss_pred ceEEEeeeecCcchhhhcccCcccchhhhcccccccccCCCCCCCCCcceEeccccCCceEEEEEEEcCCCceEEEEEeC
Q 011143 29 GLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDT 108 (492)
Q Consensus 29 ~~~ripL~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDT 108 (492)
.++||||+|.++.|+...+.+...-..+++. .+.+.........+...+||.|+.|.+|+++|+||||||+|+|++||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DT 140 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLT--KHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDT 140 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhh--ccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEeC
Confidence 6899999998877765544311100001111 11111000000013467999999999999999999999999999999
Q ss_pred CCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeE--CCe---eEEEEecCCeeEEEEEEeEeEeeeeeeecceEEEEEec
Q 011143 109 GSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR--NGT---SAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKE 183 (492)
Q Consensus 109 GSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~--~~~---~~~~~Yg~Gsv~G~~~~Dtv~lg~~~v~~~~Fg~a~~~ 183 (492)
||+++||++..|. ..+|..++.|||++|+||+. .+. .+.+.||+|++.|.++.|+|++|+.++++|.||++...
T Consensus 141 GSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~ 219 (482)
T PTZ00165 141 GSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEE 219 (482)
T ss_pred CCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEec
Confidence 9999999999996 56899999999999999998 655 67899999999999999999999999999999999987
Q ss_pred ccccccccccceEEeccccccc---cCccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCeeEEECccCCCCc--ccccE
Q 011143 184 ASITFLAAKFDGILGLGFQEIS---IGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDHY--KGEHT 258 (492)
Q Consensus 184 ~~~~~~~~~~dGILGLG~~~~s---~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G~L~fGgiD~~~y--~G~l~ 258 (492)
.+..|....+|||||||++..+ .....|++++|++||+|++++||+||.++.+ .+|+|+|||+|++++ .|++.
T Consensus 220 s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~ 297 (482)
T PTZ00165 220 SLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIW 297 (482)
T ss_pred cccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceE
Confidence 6656666788999999998773 3457889999999999999999999986532 379999999999877 57899
Q ss_pred EEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCC
Q 011143 259 YVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (492)
Q Consensus 259 ~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~ 317 (492)
|+|+.+.+||++.+++|+||++.+..+...+.||+||||+++++|++++++|.+++++.
T Consensus 298 ~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~ 356 (482)
T PTZ00165 298 WFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE 356 (482)
T ss_pred EEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc
Confidence 99999999999999999999988776667789999999999999999999999998765
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.1e-51 Score=418.45 Aligned_cols=277 Identities=51% Similarity=0.931 Sum_probs=245.5
Q ss_pred ccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCC-CcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEEEEE
Q 011143 83 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFS 161 (492)
Q Consensus 83 n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~~ 161 (492)
|+.|.+|+++|.||||||+|.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 5678999999999999999999999999999999999953 247888899999999999999999999999999999999
Q ss_pred EeEeEeeeeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCe
Q 011143 162 QDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGG 241 (492)
Q Consensus 162 ~Dtv~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G 241 (492)
+|+|++++..++++.||++....+..+....++||||||++..+.....|++++|++||.|++++||+||.++.+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998765544555678999999999887777789999999999999999999998754333479
Q ss_pred eEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCCccee
Q 011143 242 EIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVIS 321 (492)
Q Consensus 242 ~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~~~~ 321 (492)
+|+|||+|+++|.|++.|+|+.+..+|.|.+++|+||+... .+.....++|||||+++++|.+++++|.+++++..
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~--- 236 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAVP--- 236 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCcc---
Confidence 99999999999999999999998899999999999988743 23456789999999999999999999999987641
Q ss_pred cccccccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHHHHHH
Q 011143 322 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNK 401 (492)
Q Consensus 322 ~~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (492)
T Consensus 237 -------------------------------------------------------------------------------- 236 (325)
T cd05490 237 -------------------------------------------------------------------------------- 236 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEecCC
Q 011143 402 LRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYADFE 465 (492)
Q Consensus 402 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~~~~ 465 (492)
...+.|.++|+....+|+|+|.|+|+.|+|+|++|+++....
T Consensus 237 ----------------------~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~ 278 (325)
T cd05490 237 ----------------------LIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQR 278 (325)
T ss_pred ----------------------ccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCC
Confidence 123567889999889999999999999999999999986543
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.8e-51 Score=414.54 Aligned_cols=232 Identities=82% Similarity=1.398 Sum_probs=210.9
Q ss_pred EeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEE
Q 011143 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 158 (492)
Q Consensus 79 ~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G 158 (492)
+||.|+.|.+|+++|.||||||+++|+|||||+++||++..|.....|..++.|+|++|+|++..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 58899999999999999999999999999999999999999964568999999999999999999999999999999999
Q ss_pred EEEEeEeEeeeeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCC
Q 011143 159 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 238 (492)
Q Consensus 159 ~~~~Dtv~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~ 238 (492)
.+++|+|++++.+++++.||++....+..+....++||||||++..+..+..|++++|++||+|++++||+||++..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998766555556678999999999887777788999999999999999999998754333
Q ss_pred CCeeEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHH
Q 011143 239 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 239 ~~G~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
..|+|+|||+|+++|.|++.|+|+...+||.+.+++|.||++.+..+.....++|||||+++++|++++++|
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i 232 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQI 232 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhh
Confidence 479999999999999999999999988999999999999999876666678899999999999999876544
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.9e-50 Score=410.14 Aligned_cols=275 Identities=47% Similarity=0.842 Sum_probs=246.9
Q ss_pred EeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEE
Q 011143 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 158 (492)
Q Consensus 79 ~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G 158 (492)
.||.|+.|.+|+++|.||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G 79 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTG 79 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEE
Confidence 3899999999999999999999999999999999999999996 457988899999999999999999999999999999
Q ss_pred EEEEeEeEeeeeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCC
Q 011143 159 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 238 (492)
Q Consensus 159 ~~~~Dtv~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~ 238 (492)
.+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+..+
T Consensus 80 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~-- 157 (317)
T cd05478 80 ILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ-- 157 (317)
T ss_pred EEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--
Confidence 999999999999999999999987654323334579999999988876677889999999999999999999988632
Q ss_pred CCeeEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCCc
Q 011143 239 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 318 (492)
Q Consensus 239 ~~G~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~ 318 (492)
.+|+|+|||+|+++|.|++.|+|+....+|.|.++++.||++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 158 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~ 236 (317)
T cd05478 158 QGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ 236 (317)
T ss_pred CCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999989999999999999999875 2346789999999999999999999999997651
Q ss_pred ceecccccccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHHH
Q 011143 319 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 398 (492)
Q Consensus 319 ~~~~~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (492)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcccHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEe
Q 011143 399 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYA 462 (492)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~ 462 (492)
...+.|.++|+....+|.|+|.|+|+.|.|+|++|+.+.
T Consensus 237 -------------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~ 275 (317)
T cd05478 237 -------------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD 275 (317)
T ss_pred -------------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC
Confidence 124567889999889999999999999999999999874
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.1e-50 Score=411.57 Aligned_cols=267 Identities=47% Similarity=0.881 Sum_probs=240.5
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEEEEEEeEeEee
Q 011143 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVG 168 (492)
Q Consensus 89 Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~~~Dtv~lg 168 (492)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 4589989999999999999999999999999999999999999999
Q ss_pred eeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCeeEEECcc
Q 011143 169 DLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGV 248 (492)
Q Consensus 169 ~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G~L~fGgi 248 (492)
+.+++++.||++....+..+....++||||||++..+.....|++++|++||+|++++||+||.++++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877655445556789999999998877677889999999999999999999987644344799999999
Q ss_pred CCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCCcceeccccccc
Q 011143 249 DPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLV 328 (492)
Q Consensus 249 D~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~~~~~~C~~~~ 328 (492)
|+++|.|++.|+|+.+.++|.|.+++|+||++.+. +.....++|||||+++++|++++++|.+.+++..
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~---------- 228 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATA---------- 228 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcc----------
Confidence 99999999999999999999999999999998764 3446789999999999999999999999887651
Q ss_pred ccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHHHHHHhhhcccH
Q 011143 329 DQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETA 408 (492)
Q Consensus 329 ~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (492)
T Consensus 229 -------------------------------------------------------------------------------- 228 (316)
T cd05486 229 -------------------------------------------------------------------------------- 228 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEec
Q 011143 409 DQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYAD 463 (492)
Q Consensus 409 ~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~~ 463 (492)
..+.|.++|+....+|+|+|.|+|+.|+|+|++|+++..
T Consensus 229 ----------------~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~ 267 (316)
T cd05486 229 ----------------TDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQ 267 (316)
T ss_pred ----------------cCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecc
Confidence 135688999988899999999999999999999999753
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.2e-50 Score=409.67 Aligned_cols=281 Identities=54% Similarity=0.998 Sum_probs=250.2
Q ss_pred EeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCC-CcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeE
Q 011143 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAIS 157 (492)
Q Consensus 79 ~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~ 157 (492)
.||.|+.|.+|+++|.||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999952 23688888999999999999999999999999999
Q ss_pred EEEEEeEeEeeeeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCC
Q 011143 158 GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEG 237 (492)
Q Consensus 158 G~~~~Dtv~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~ 237 (492)
|.+++|++++++..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+.++.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876554455567899999999988766778899999999999999999999876543
Q ss_pred CCCeeEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCC
Q 011143 238 EEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (492)
Q Consensus 238 ~~~G~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~ 317 (492)
...|+|+|||+|+++|.|+++|+|+...++|.|.++++.++++.+. ..+..++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 4479999999999999999999999989999999999999998763 45678999999999999999999999999765
Q ss_pred cceecccccccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHH
Q 011143 318 GVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIW 397 (492)
Q Consensus 318 ~~~~~~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (492)
..
T Consensus 240 ~~------------------------------------------------------------------------------ 241 (329)
T cd05485 240 PI------------------------------------------------------------------------------ 241 (329)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred HHHHhhhcccHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEecCCc
Q 011143 398 MQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYADFEG 466 (492)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~~~~~ 466 (492)
..+.|.++|+....+|+|+|.|+|+.|.|+|++|+++....+
T Consensus 242 ---------------------------~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~ 283 (329)
T cd05485 242 ---------------------------IGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMG 283 (329)
T ss_pred ---------------------------cCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCC
Confidence 135678999988889999999999999999999999876443
No 7
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.3e-50 Score=407.86 Aligned_cols=276 Identities=46% Similarity=0.872 Sum_probs=245.7
Q ss_pred ccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCC-CcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEEE
Q 011143 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGF 159 (492)
Q Consensus 81 l~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~ 159 (492)
|.|+.|.+|+++|.||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 568889999999999999999999999999999999999963 2478888999999999999999999999999999999
Q ss_pred EEEeEeEeeeeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCCC
Q 011143 160 FSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 239 (492)
Q Consensus 160 ~~~Dtv~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~ 239 (492)
+++|+|++++..+. +.||++.......+....++||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998875 88999887644445556789999999988776677899999999999999999999987643345
Q ss_pred CeeEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCCcc
Q 011143 240 GGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGV 319 (492)
Q Consensus 240 ~G~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~~ 319 (492)
.|+|+|||+|+++|.|+++|+|+...++|+|.++++.|+++.+. +..+..++|||||+++++|.++++++++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999999999999999999998764 3456789999999999999999999999998761
Q ss_pred eecccccccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHHHH
Q 011143 320 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQ 399 (492)
Q Consensus 320 ~~~~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (492)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcccHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEecC
Q 011143 400 NKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYADF 464 (492)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~~~ 464 (492)
..+.|.++|+....+|+|+|+|+|++|+|+|++|+++...
T Consensus 238 -------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~ 277 (326)
T cd05487 238 -------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSD 277 (326)
T ss_pred -------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccC
Confidence 1356788999988999999999999999999999998654
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=9.2e-50 Score=405.62 Aligned_cols=274 Identities=49% Similarity=0.897 Sum_probs=246.4
Q ss_pred EeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEE
Q 011143 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 158 (492)
Q Consensus 79 ~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G 158 (492)
+||.|+.|.+|+++|+||||+|++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5899999999999999999999999999999999999999996 458988899999999999999999999999999999
Q ss_pred EEEEeEeEeeeeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCC
Q 011143 159 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 238 (492)
Q Consensus 159 ~~~~Dtv~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~ 238 (492)
.+++|++++++..++++.|+++....+..+.....+||||||++..+.....|.+.+|++||+|++++||+||++.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544445567999999999887666778888999999999999999999753 2
Q ss_pred CCeeEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCCc
Q 011143 239 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 318 (492)
Q Consensus 239 ~~G~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~ 318 (492)
..|+|+|||+|+++|.|++.|+|+...++|.+.+++|+||++.+.. ....++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987653 35679999999999999999999999997651
Q ss_pred ceecccccccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHHH
Q 011143 319 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 398 (492)
Q Consensus 319 ~~~~~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (492)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcccHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEe
Q 011143 399 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYA 462 (492)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~ 462 (492)
...+.|.++|+....+|.|+|.|+|++|.|+|++|+++.
T Consensus 236 -------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~ 274 (320)
T cd05488 236 -------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV 274 (320)
T ss_pred -------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC
Confidence 124567889998888999999999999999999999853
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.1e-49 Score=402.54 Aligned_cols=270 Identities=45% Similarity=0.880 Sum_probs=243.2
Q ss_pred CceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEEEEEEeEe
Q 011143 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNV 165 (492)
Q Consensus 86 d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~~~Dtv 165 (492)
|.+|+++|.||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++.|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 4579988999999999999999999999999999999999999
Q ss_pred EeeeeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCeeEEE
Q 011143 166 KVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 245 (492)
Q Consensus 166 ~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G~L~f 245 (492)
++|+.+++++.||++....+..+.....+||||||++..+.....+++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765444444567999999998887777789999999999999999999998753 223799999
Q ss_pred CccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCCcceecccc
Q 011143 246 GGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECK 325 (492)
Q Consensus 246 GgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~~~~~~C~ 325 (492)
||+|++++.|++.|+|+.+.++|.|.++++.||++....+..+..++|||||+++++|++++++|++.+++..
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~------- 231 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ------- 231 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc-------
Confidence 9999999999999999999999999999999999887655566789999999999999999999999998761
Q ss_pred cccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHHHHHHhhhc
Q 011143 326 TLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRN 405 (492)
Q Consensus 326 ~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (492)
T Consensus 232 -------------------------------------------------------------------------------- 231 (318)
T cd05477 232 -------------------------------------------------------------------------------- 231 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEe
Q 011143 406 ETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYA 462 (492)
Q Consensus 406 ~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~ 462 (492)
...+.|.++|+....+|+|+|.|+|+++.++|++|+.+.
T Consensus 232 ------------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~ 270 (318)
T cd05477 232 ------------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN 270 (318)
T ss_pred ------------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC
Confidence 124567899999889999999999999999999999874
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.8e-48 Score=410.08 Aligned_cols=235 Identities=36% Similarity=0.690 Sum_probs=208.9
Q ss_pred CCcceEeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecC
Q 011143 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGT 153 (492)
Q Consensus 74 ~~~~~~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~ 153 (492)
+....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 356789999999999999999999999999999999999999999996 5689999999999999999999999999999
Q ss_pred CeeEEEEEEeEeEeeeeeeecceEEEEEecccc--cccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEe
Q 011143 154 GAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL 231 (492)
Q Consensus 154 Gsv~G~~~~Dtv~lg~~~v~~~~Fg~a~~~~~~--~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L 231 (492)
|++.|.++.|+|++|+.+++ ..|+++....+. .+....+|||||||++..+.....|++++|++||.|++++||+||
T Consensus 204 GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L 282 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL 282 (453)
T ss_pred CCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEe
Confidence 99999999999999999988 568887755432 233456899999999988777788999999999999999999999
Q ss_pred cCCCCCCCCeeEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHH
Q 011143 232 NRDIEGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (492)
Q Consensus 232 ~~~~~~~~~G~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~ 311 (492)
++... ..|.|+|||+|+++|.|++.|+|+.+..||.|.++ +.+++... ....++|||||+++++|+++++++.
T Consensus 283 ~~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~----~~~~aIiDSGTsli~lP~~~~~ai~ 355 (453)
T PTZ00147 283 PPEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS----EKANVIVDSGTSVITVPTEFLNKFV 355 (453)
T ss_pred cCCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEec----CceeEEECCCCchhcCCHHHHHHHH
Confidence 86532 37999999999999999999999998899999998 57776432 4678999999999999999999999
Q ss_pred HHhCCC
Q 011143 312 HAIGAS 317 (492)
Q Consensus 312 ~~i~a~ 317 (492)
+++++.
T Consensus 356 ~~l~~~ 361 (453)
T PTZ00147 356 ESLDVF 361 (453)
T ss_pred HHhCCe
Confidence 999765
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.9e-47 Score=397.89 Aligned_cols=235 Identities=35% Similarity=0.718 Sum_probs=207.4
Q ss_pred CCcceEeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecC
Q 011143 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGT 153 (492)
Q Consensus 74 ~~~~~~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~ 153 (492)
.....+||.|+.+.+|+++|.||||||++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++
T Consensus 124 ~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~ 202 (450)
T PTZ00013 124 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGS 202 (450)
T ss_pred cCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECC
Confidence 356789999999999999999999999999999999999999999996 4689999999999999999999999999999
Q ss_pred CeeEEEEEEeEeEeeeeeeecceEEEEEeccc--ccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEe
Q 011143 154 GAISGFFSQDNVKVGDLVVKNQDFIEATKEAS--ITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL 231 (492)
Q Consensus 154 Gsv~G~~~~Dtv~lg~~~v~~~~Fg~a~~~~~--~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L 231 (492)
|++.|.+++|+|++|+.+++ ..|+++..... ..+....++||||||++..+.....|++++|++||+|++++||+||
T Consensus 203 Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L 281 (450)
T PTZ00013 203 GTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 281 (450)
T ss_pred ceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEe
Confidence 99999999999999999887 57887765432 2233456799999999988776778999999999999999999999
Q ss_pred cCCCCCCCCeeEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHH
Q 011143 232 NRDIEGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (492)
Q Consensus 232 ~~~~~~~~~G~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~ 311 (492)
++.. ...|+|+|||+|+++|.|++.|+|+....||.|.++ +.+|.... ....+++||||+++++|++++++++
T Consensus 282 ~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~ 354 (450)
T PTZ00013 282 PVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFF 354 (450)
T ss_pred cCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHH
Confidence 8653 237999999999999999999999998899999998 66665432 3567999999999999999999999
Q ss_pred HHhCCC
Q 011143 312 HAIGAS 317 (492)
Q Consensus 312 ~~i~a~ 317 (492)
+++++.
T Consensus 355 ~~l~~~ 360 (450)
T PTZ00013 355 ANLNVI 360 (450)
T ss_pred HHhCCe
Confidence 999765
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=8.5e-45 Score=366.99 Aligned_cols=270 Identities=38% Similarity=0.703 Sum_probs=240.3
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEEEEEEeEeEe
Q 011143 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKV 167 (492)
Q Consensus 88 ~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~~~Dtv~l 167 (492)
+|+++|.||||+|+++|++||||+++||++..|..+..|..+..|++.+|+|++..++.+.+.|++|+++|.++.|+|++
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999963335788899999999999999999999999999999999999999
Q ss_pred eeeeeecceEEEEEecccccccccccceEEeccccccccCc-cCchhhhhhhcCCCCCCeEEEEecCCCCCCCCeeEEEC
Q 011143 168 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGK-AIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 246 (492)
Q Consensus 168 g~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~-~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G~L~fG 246 (492)
++..++++.||.+....+..+....++||||||++..+... ..+++++|+++|+|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999865555566788999999988776554 788999999999999999999999875 347999999
Q ss_pred ccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCCcceeccccc
Q 011143 247 GVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKT 326 (492)
Q Consensus 247 giD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~~~~~~C~~ 326 (492)
|+|+++|+|++.|+|+...++|.+.+++|.+++... .......++||||++++++|.+++++|++++++...
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~------- 230 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS------- 230 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE-------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhccccc-------
Confidence 999999999999999999999999999999999932 234557899999999999999999999999988721
Q ss_pred ccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHHHHHHhhhcc
Q 011143 327 LVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNE 406 (492)
Q Consensus 327 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (492)
T Consensus 231 -------------------------------------------------------------------------------- 230 (317)
T PF00026_consen 231 -------------------------------------------------------------------------------- 230 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEecCCc
Q 011143 407 TADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYADFEG 466 (492)
Q Consensus 407 ~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~~~~~ 466 (492)
.+.|.++|+....+|.|+|.|++.+|+|+|++|+.+.....
T Consensus 231 -------------------~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~ 271 (317)
T PF00026_consen 231 -------------------DGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGN 271 (317)
T ss_dssp -------------------CSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTT
T ss_pred -------------------ceeEEEecccccccceEEEeeCCEEEEecchHhcccccccc
Confidence 16788999998899999999999999999999999987664
No 13
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-43 Score=364.38 Aligned_cols=284 Identities=40% Similarity=0.729 Sum_probs=235.3
Q ss_pred ceEeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCC-CCC-CCCCCCCceeECCee--------
Q 011143 77 DIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYF-HSK-YKSSHSSTYKRNGTS-------- 146 (492)
Q Consensus 77 ~~~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~-~~~-y~p~~SsT~~~~~~~-------- 146 (492)
...++..+.+.+|+++|.||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3466777788899999999999999999999999999999999952 7874 455 999999999997743
Q ss_pred ----------EEEEecCC-eeEEEEEEeEeEeee---eeeecceEEEEEecccccccc-cccceEEeccccccccCccCc
Q 011143 147 ----------AAIQYGTG-AISGFFSQDNVKVGD---LVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAIP 211 (492)
Q Consensus 147 ----------~~~~Yg~G-sv~G~~~~Dtv~lg~---~~v~~~~Fg~a~~~~~~~~~~-~~~dGILGLG~~~~s~~~~~~ 211 (492)
|.+.|++| +++|.+++|+|++++ ..++++.|||+....+. +.. .+++||||||+...+...+.+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 99999995 589999999999998 78888999999988765 444 678999999999988655544
Q ss_pred hhhhhhhcCCCCCCeEEEEecCCCCCC-CCeeEEECccCCCCcccccEEEeccccc--ceEEEeeeEEEcCee----eee
Q 011143 212 VWYNMLDQGLVKEPVFSFWLNRDIEGE-EGGEIVFGGVDPDHYKGEHTYVPVTKKG--YWQFEMGDVLIDGET----TGY 284 (492)
Q Consensus 212 ~~~~L~~qg~I~~~~FSl~L~~~~~~~-~~G~L~fGgiD~~~y~G~l~~~pv~~~~--~w~v~l~~i~vgg~~----~~~ 284 (492)
.+.++. ++||+||.+..... .+|.|+||++|+.++.+++.|+|+.... ||.+.+++|.||++. ..+
T Consensus 192 ~~~~~~-------~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SFYNAI-------NVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cccCCc-------eeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 443332 38999999875332 4899999999999999999999998877 999999999999843 222
Q ss_pred cCCCceEEEcCCcccccccHHHHHHHHHHhCCCcceecccccccccchhhHHHHHHhhcCcccccccccccccCCCcCcc
Q 011143 285 CSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFS 364 (492)
Q Consensus 285 ~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~~~~~~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 364 (492)
+.+...+|+||||++++||+++|++|.+++++.-
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 3335889999999999999999999999999860
Q ss_pred cccceeeccCCCCCCCCCCCCccchhhHHHHHHHHHHhhhcccHHHHHHHHHhhcCCCCCCcccccccccccCC----CC
Q 011143 365 MGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSS----MP 440 (492)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~----~p 440 (492)
+.....+.+.+.|..... +|
T Consensus 299 --------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P 322 (398)
T KOG1339|consen 299 --------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLP 322 (398)
T ss_pred --------------------------------------------------------eccccCCceeeecccCCCCcccCC
Confidence 001246677889988877 99
Q ss_pred cEEEEEC-CEEEeeCccceEEEecCCcc-eEEee
Q 011143 441 NVSFTIG-GKVFDLAPNEVWLYADFEGS-MLHLV 472 (492)
Q Consensus 441 ~i~~~~~-g~~~~l~~~~y~~~~~~~~~-~~~~~ 472 (492)
.|+|+|+ |+.|.++|++|+++...... |+..+
T Consensus 323 ~i~~~f~~g~~~~l~~~~y~~~~~~~~~~Cl~~~ 356 (398)
T KOG1339|consen 323 DITFHFGGGAVFSLPPKNYLVEVSDGGGVCLAFF 356 (398)
T ss_pred cEEEEECCCcEEEeCccceEEEECCCCCceeeEE
Confidence 9999999 89999999999999876654 44333
No 14
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.4e-42 Score=343.25 Aligned_cols=219 Identities=36% Similarity=0.541 Sum_probs=192.0
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeE-CCeeEEEEecCCe-eEEEEEEeEeE
Q 011143 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR-NGTSAAIQYGTGA-ISGFFSQDNVK 166 (492)
Q Consensus 89 Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~-~~~~~~~~Yg~Gs-v~G~~~~Dtv~ 166 (492)
|+++|+||||||++.|++||||+++||+++.|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.++.|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 33455677899999999987 4689999999997 79999999999
Q ss_pred eeeeeeecceEEEEEecccccccccccceEEeccccccccC---ccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCeeE
Q 011143 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIG---KAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEI 243 (492)
Q Consensus 167 lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~---~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G~L 243 (492)
+++.+++++.||++.......+....++||||||++..+.. ...+++++|.+++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999876543455567899999999876542 35678999999865 79999999863 27999
Q ss_pred EECccCCCCcccccEEEeccc-ccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhC
Q 011143 244 VFGGVDPDHYKGEHTYVPVTK-KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 315 (492)
Q Consensus 244 ~fGgiD~~~y~G~l~~~pv~~-~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~ 315 (492)
+|||+|+++|.|++.|+|+.+ .++|.|.+++|.||++... ...+..++|||||+++++|++++++|.++++
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 999999999999999999987 7899999999999998442 3457889999999999999999999999994
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=5.4e-41 Score=347.18 Aligned_cols=223 Identities=29% Similarity=0.488 Sum_probs=184.5
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEEEEEEeEeE
Q 011143 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK 166 (492)
Q Consensus 87 ~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~~~Dtv~ 166 (492)
..|+++|.||||+|+|.|+|||||+++||++..| |..++.|+|++|+|++..++.|++.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 3699999999999999999999999999999876 23467899999999999999999999999999999999999
Q ss_pred eeeeeeecce----EEEEEecccccccccccceEEecccccccc--CccCchhhhhhhcCCCCCCeEEEEecCCC-----
Q 011143 167 VGDLVVKNQD----FIEATKEASITFLAAKFDGILGLGFQEISI--GKAIPVWYNMLDQGLVKEPVFSFWLNRDI----- 235 (492)
Q Consensus 167 lg~~~v~~~~----Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~--~~~~~~~~~L~~qg~I~~~~FSl~L~~~~----- 235 (492)
+++. .++. |+++....+.......++||||||++.++. ....|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344433322211223579999999988764 2457899999999987 579999986421
Q ss_pred --CCCCCeeEEECccCCCCcccccEEEecccccceEEEeeeEEEcCeeeeecCC---CceEEEcCCcccccccHHHHHHH
Q 011143 236 --EGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST---GCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 236 --~~~~~G~L~fGgiD~~~y~G~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~---~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
.....|+|+|||+|+++|.|++.|+|+.+..+|.|.+++|+|+++.+..... ...+||||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999988754221 24699999999999999999999
Q ss_pred HHHhCCC
Q 011143 311 NHAIGAS 317 (492)
Q Consensus 311 ~~~i~a~ 317 (492)
.+++++.
T Consensus 234 ~~~l~~~ 240 (364)
T cd05473 234 VDAIKAA 240 (364)
T ss_pred HHHHHhh
Confidence 9999876
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=349.73 Aligned_cols=217 Identities=24% Similarity=0.415 Sum_probs=175.6
Q ss_pred CCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCC--CCCCCCCCCCCceeECC------------------
Q 011143 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRNG------------------ 144 (492)
Q Consensus 85 ~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~--~~~~y~p~~SsT~~~~~------------------ 144 (492)
.+.+|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4678999999999999999999999999999999995 676 45799999999998742
Q ss_pred --eeEEEEecCCe-eEEEEEEeEeEeee-----eeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhh
Q 011143 145 --TSAAIQYGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNM 216 (492)
Q Consensus 145 --~~~~~~Yg~Gs-v~G~~~~Dtv~lg~-----~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L 216 (492)
|.|.+.|++|+ ..|.+++|+++|++ ..++++.|||+....+. +. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 48999999999987 46889999999876542 32 257899999998765 55566
Q ss_pred hhcCCCCCCeEEEEecCCCC-CCCCeeEEECccCCCCccc-ccEEEeccc---ccceEEEeeeEEEcCeeeeecCC----
Q 011143 217 LDQGLVKEPVFSFWLNRDIE-GEEGGEIVFGGVDPDHYKG-EHTYVPVTK---KGYWQFEMGDVLIDGETTGYCST---- 287 (492)
Q Consensus 217 ~~qg~I~~~~FSl~L~~~~~-~~~~G~L~fGgiD~~~y~G-~l~~~pv~~---~~~w~v~l~~i~vgg~~~~~~~~---- 287 (492)
..+ +. ++||+||.+..+ ....|.|+||+. .++.| .+.|+|+.. ..+|.|.+++|+||++.+..+..
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 442 44 599999975322 234799999984 45554 488999974 47999999999999988764322
Q ss_pred --CceEEEcCCcccccccHHHHHHHHHHhCCC
Q 011143 288 --GCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (492)
Q Consensus 288 --~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~ 317 (492)
...+||||||++++||+++|+++.+++...
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~ 336 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEA 336 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHH
Confidence 246999999999999999999988887543
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=5e-40 Score=335.03 Aligned_cols=215 Identities=30% Similarity=0.472 Sum_probs=179.1
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCC--CCCCCCCCCCCceeEC----------------CeeEE
Q 011143 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRN----------------GTSAA 148 (492)
Q Consensus 87 ~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~--~~~~y~p~~SsT~~~~----------------~~~~~ 148 (492)
++|+++|+||||||+++|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .+.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999996 454 4578999999999863 56899
Q ss_pred EEecCCe-eEEEEEEeEeEeeeeeee-------cceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcC
Q 011143 149 IQYGTGA-ISGFFSQDNVKVGDLVVK-------NQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQG 220 (492)
Q Consensus 149 ~~Yg~Gs-v~G~~~~Dtv~lg~~~v~-------~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg 220 (492)
+.|++|+ +.|.+++|+|++++..++ ++.||++....+ .+.....+||||||++..+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999986653 467999876653 24455679999999986542 233455577777
Q ss_pred CCCC--CeEEEEecCCCCCCCCeeEEECccCCCCcc----------cccEEEecccccceEEEeeeEEEcCee-eeecCC
Q 011143 221 LVKE--PVFSFWLNRDIEGEEGGEIVFGGVDPDHYK----------GEHTYVPVTKKGYWQFEMGDVLIDGET-TGYCST 287 (492)
Q Consensus 221 ~I~~--~~FSl~L~~~~~~~~~G~L~fGgiD~~~y~----------G~l~~~pv~~~~~w~v~l~~i~vgg~~-~~~~~~ 287 (492)
.+.. ++||+||++. .|.|+|||+|++++. +++.|+|+....+|.|.+++|+|+++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7664 9999999864 799999999999987 889999999889999999999999886 112345
Q ss_pred CceEEEcCCcccccccHHHHHHHHH
Q 011143 288 GCNAIADSGTSLLAGPTTIITQINH 312 (492)
Q Consensus 288 ~~~aiiDTGTt~i~lP~~~~~~l~~ 312 (492)
...++|||||++++||++++++|.+
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~ 255 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINN 255 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHh
Confidence 7789999999999999999988764
No 18
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=6.7e-39 Score=321.60 Aligned_cols=233 Identities=33% Similarity=0.557 Sum_probs=202.9
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCC-eeEEEEEEeEeE
Q 011143 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDNVK 166 (492)
Q Consensus 88 ~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~G-sv~G~~~~Dtv~ 166 (492)
.|+++|.||||+|++.|++||||+++||+ .|.+.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 578899995 589999999999
Q ss_pred eeeeeeecceEEEEEecccccccccccceEEecccccccc-----CccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCe
Q 011143 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI-----GKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGG 241 (492)
Q Consensus 167 lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~-----~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G 241 (492)
+++..++++.||++... ...+||||||++..+. ...++++++|.+||+|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 99999999999999873 2358999999988743 23457999999999999999999998753 2379
Q ss_pred eEEECccCCCCcccccEEEecccc------cceEEEeeeEEEcCeeee--ecCCCceEEEcCCcccccccHHHHHHHHHH
Q 011143 242 EIVFGGVDPDHYKGEHTYVPVTKK------GYWQFEMGDVLIDGETTG--YCSTGCNAIADSGTSLLAGPTTIITQINHA 313 (492)
Q Consensus 242 ~L~fGgiD~~~y~G~l~~~pv~~~------~~w~v~l~~i~vgg~~~~--~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~ 313 (492)
.|+|||+|+++|.|++.|+|+... .+|.|.+++|.++++... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hCCCcceecccccccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHH
Q 011143 314 IGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEM 393 (492)
Q Consensus 314 i~a~~~~~~~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (492)
+++...
T Consensus 204 ~~~~~~-------------------------------------------------------------------------- 209 (295)
T cd05474 204 LGATYD-------------------------------------------------------------------------- 209 (295)
T ss_pred hCCEEc--------------------------------------------------------------------------
Confidence 987610
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccceEEEec
Q 011143 394 AVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEVWLYAD 463 (492)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y~~~~~ 463 (492)
...+.|.++|+.... |+|+|.|+|.+|+|++++|+++..
T Consensus 210 ------------------------------~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~ 248 (295)
T cd05474 210 ------------------------------SDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPAS 248 (295)
T ss_pred ------------------------------CCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccc
Confidence 113567789998777 999999999999999999999865
No 19
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.2e-38 Score=313.42 Aligned_cols=227 Identities=48% Similarity=0.868 Sum_probs=199.2
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCC--CCCCCCCceeECCeeEEEEecCCeeEEEEEEeEeE
Q 011143 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSK--YKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK 166 (492)
Q Consensus 89 Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~--y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~~~Dtv~ 166 (492)
|+++|.||||+|++.|++||||+++||++..|. ...|..... |++..|+++....+.+.+.|++|++.|.++.|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999996 223333333 89999999999999999999999999999999999
Q ss_pred eeeeeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCeeEEEC
Q 011143 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 246 (492)
Q Consensus 167 lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G~L~fG 246 (492)
+++..++++.||++..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999997754 234567899999999887666678899999999999999999999885322348999999
Q ss_pred ccCCCCcccccEEEeccc--ccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHHHhCCC
Q 011143 247 GVDPDHYKGEHTYVPVTK--KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (492)
Q Consensus 247 giD~~~y~G~l~~~pv~~--~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~ 317 (492)
|+|++++.+++.|+|+.. ..+|.+.+++|.+++...........++|||||+++++|.+++++|++++++.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999988 78999999999999974222356788999999999999999999999999887
No 20
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.3e-38 Score=320.71 Aligned_cols=191 Identities=25% Similarity=0.426 Sum_probs=160.9
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCe-eEEEEEEeEeE
Q 011143 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 166 (492)
Q Consensus 88 ~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gs-v~G~~~~Dtv~ 166 (492)
+|+++|.||||||++.|++||||+++||+|..| +.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976543 57899999998 48999999999
Q ss_pred eeee-eeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCeeEEE
Q 011143 167 VGDL-VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 245 (492)
Q Consensus 167 lg~~-~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G~L~f 245 (492)
+++. .++++.||++....+. + ...+||||||++..+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999866542 2 267999999987665 44455443 2589999998743 133799999
Q ss_pred CccCCCCcccccEEEecccc----cceEEEeeeEEEcCeeeeec---CCCceEEEcCCcccccccHHHHHHHHHHhCCC
Q 011143 246 GGVDPDHYKGEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC---STGCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (492)
Q Consensus 246 GgiD~~~y~G~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~---~~~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~ 317 (492)
||+|++ .|++.|+|+.++ .+|.|++++|+||++.+... .....++|||||+++++|++++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~ 200 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAA 200 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHH
Confidence 999998 999999999753 68999999999999887542 23567999999999999999999999999765
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4.7e-36 Score=297.09 Aligned_cols=177 Identities=29% Similarity=0.438 Sum_probs=152.0
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCe-eEEEEEEeEeE
Q 011143 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 166 (492)
Q Consensus 88 ~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gs-v~G~~~~Dtv~ 166 (492)
+|+++|+||||||++.|+|||||+++||+| |.+.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999975 35788999775 79999999999
Q ss_pred eeee--eeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCCCCeeEE
Q 011143 167 VGDL--VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIV 244 (492)
Q Consensus 167 lg~~--~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~~G~L~ 244 (492)
+++. .++++.||++..... +.....+||||||++..+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999997754 445678999999987654 667787776 89999998753233489999
Q ss_pred ECccCCCCcccccEEEeccc----ccceEEEeeeEEEcCeeeee--------cCCCceEEEcCCcccccccH
Q 011143 245 FGGVDPDHYKGEHTYVPVTK----KGYWQFEMGDVLIDGETTGY--------CSTGCNAIADSGTSLLAGPT 304 (492)
Q Consensus 245 fGgiD~~~y~G~l~~~pv~~----~~~w~v~l~~i~vgg~~~~~--------~~~~~~aiiDTGTt~i~lP~ 304 (492)
|||+|++ +.|++.|+|+.. .++|.+++++|+|+++.+.+ ......+++||||+++++|+
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~ 192 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPD 192 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCc
Confidence 9999999 999999999976 57999999999999987642 24567899999999999984
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.6e-35 Score=290.65 Aligned_cols=184 Identities=25% Similarity=0.410 Sum_probs=153.4
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCC-CCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCC-eeEEEEEEeE
Q 011143 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSA-KCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDN 164 (492)
Q Consensus 87 ~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~-~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~G-sv~G~~~~Dt 164 (492)
++|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.++|++| ++.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999984 564 45 36799999965 5799999999
Q ss_pred eEeee----eeeecceEEEEEeccccc-ccccccceEEeccccccccCccCchhhhhhhcCCCCCCeEEEEecCCCCCCC
Q 011143 165 VKVGD----LVVKNQDFIEATKEASIT-FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 239 (492)
Q Consensus 165 v~lg~----~~v~~~~Fg~a~~~~~~~-~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~L~~~~~~~~ 239 (492)
|+++. ..++++.|||+....+.. ......+||||||+...+ ++++|.+++.| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----C
Confidence 99964 477889999997654321 234567999999997654 78899999999 89999999763 2
Q ss_pred CeeEEECccCCCCcccccEEEecccc---cceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHH
Q 011143 240 GGEIVFGGVDPDHYKGEHTYVPVTKK---GYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTT 305 (492)
Q Consensus 240 ~G~L~fGgiD~~~y~G~l~~~pv~~~---~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~ 305 (492)
+|.|+|| |..++.|++.|+|+.++ .+|.|++.+|+||++... .....++|||||+++++|++
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCc
Confidence 6999998 45667899999999864 799999999999998643 45678999999999999954
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2e-32 Score=282.42 Aligned_cols=212 Identities=17% Similarity=0.224 Sum_probs=163.3
Q ss_pred EcCCCce-EEEEEeCCCCceeeeCCC----------CCCCcCCCCCCCCCCCC------CCceeECCeeEEEE-ecCCe-
Q 011143 95 IGTPSQT-FTVIFDTGSSNLWVPSAK----------CYFSVSCYFHSKYKSSH------SSTYKRNGTSAAIQ-YGTGA- 155 (492)
Q Consensus 95 IGTP~Q~-~~v~lDTGSs~~WV~s~~----------C~~~~~C~~~~~y~p~~------SsT~~~~~~~~~~~-Yg~Gs- 155 (492)
+|||-.+ +.|++||||+++||+|.+ |. +..|..+..|++.+ ++......|.+... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5788777 999999999999996664 43 56777666676542 22222234666544 77885
Q ss_pred eEEEEEEeEeEeee--------eeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcCCCCCCeE
Q 011143 156 ISGFFSQDNVKVGD--------LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 227 (492)
Q Consensus 156 v~G~~~~Dtv~lg~--------~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg~I~~~~F 227 (492)
..|.+++|+++|+. .+++++.|||+.......+ ...++||||||+..++ +..+|..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 68999999999973 3688999999986532112 2347999999999887 4556666554 46999
Q ss_pred EEEecCCCCCCCCeeEEECccCCCCcc------cccEEEecccc----cceEEEeeeEEEcCeeeeec--------CCCc
Q 011143 228 SFWLNRDIEGEEGGEIVFGGVDPDHYK------GEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC--------STGC 289 (492)
Q Consensus 228 Sl~L~~~~~~~~~G~L~fGgiD~~~y~------G~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~--------~~~~ 289 (492)
|+||.+... .+|.|+||+.++.++. +++.|+|+..+ .||.|++++|+||++.+.++ .+..
T Consensus 153 S~CL~~~~~--~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSPG--GPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCCC--CCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 999987532 3799999999988775 78999999754 79999999999999987542 2345
Q ss_pred eEEEcCCcccccccHHHHHHHHHHhCCC
Q 011143 290 NAIADSGTSLLAGPTTIITQINHAIGAS 317 (492)
Q Consensus 290 ~aiiDTGTt~i~lP~~~~~~l~~~i~a~ 317 (492)
.+||||||++++||+++|++|.+++.+.
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~ 258 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKA 258 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHH
Confidence 7999999999999999999999998754
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=7.4e-22 Score=168.79 Aligned_cols=108 Identities=57% Similarity=0.887 Sum_probs=95.0
Q ss_pred EEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCC-CCCCCCceeECCeeEEEEecCCeeEEEEEEeEeEeee
Q 011143 91 GEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKY-KSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGD 169 (492)
Q Consensus 91 ~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y-~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~~~Dtv~lg~ 169 (492)
++|.||||||++.|+|||||+++||++..|. ...|..+..| +|..|++++...+.+.+.|++|++.|.++.|+|++++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 2344455666 9999999999999999999999999999999999999
Q ss_pred eeeecceEEEEEecccccccccccceEEec
Q 011143 170 LVVKNQDFIEATKEASITFLAAKFDGILGL 199 (492)
Q Consensus 170 ~~v~~~~Fg~a~~~~~~~~~~~~~dGILGL 199 (492)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999876644445678999997
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.85 E-value=2.5e-20 Score=171.53 Aligned_cols=136 Identities=34% Similarity=0.523 Sum_probs=106.0
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeEC----------------------Cee
Q 011143 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRN----------------------GTS 146 (492)
Q Consensus 89 Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~----------------------~~~ 146 (492)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2478888889888762 168
Q ss_pred EEEEecCCe-eEEEEEEeEeEeee-----eeeecceEEEEEecccccccccccceEEeccccccccCccCchhhhhhhcC
Q 011143 147 AAIQYGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQG 220 (492)
Q Consensus 147 ~~~~Yg~Gs-v~G~~~~Dtv~lg~-----~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~~~~s~~~~~~~~~~L~~qg 220 (492)
|.+.|++++ ..|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 58999999999986 46788999999987643 2277999999998877 78888887
Q ss_pred CCCCCeEEEEecCCCCCCCCeeEEECc
Q 011143 221 LVKEPVFSFWLNRDIEGEEGGEIVFGG 247 (492)
Q Consensus 221 ~I~~~~FSl~L~~~~~~~~~G~L~fGg 247 (492)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 57899999998 2233489999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.04 E-value=6.2e-10 Score=102.05 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=77.3
Q ss_pred ceEEEeeeEEEcCeeeeecCC-------CceEEEcCCcccccccHHHHHHHHHHhCCCcceecccccccccchhhHHHHH
Q 011143 267 YWQFEMGDVLIDGETTGYCST-------GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEML 339 (492)
Q Consensus 267 ~w~v~l~~i~vgg~~~~~~~~-------~~~aiiDTGTt~i~lP~~~~~~l~~~i~a~~~~~~~C~~~~~~fg~~~~~~~ 339 (492)
+|.|++.+|+||++.+.++.. ...++|||||++++||+++|+++.+++.+.- .
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~--------------------~ 60 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQM--------------------G 60 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHH--------------------H
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHh--------------------h
Confidence 588999999999999886544 4679999999999999999999999997650 0
Q ss_pred Hhhc-CcccccccccccccCCCcCcccccceeeccCCCCCCCCCCCCccchhhHHHHHHHHHHhhhcccHHHHHHHHHhh
Q 011143 340 IAET-QPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQL 418 (492)
Q Consensus 340 ~~~~-~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (492)
.... ++........+||..
T Consensus 61 ~~~~~~~~~~~~~~~~Cy~~------------------------------------------------------------ 80 (161)
T PF14541_consen 61 APGVSREAPPFSGFDLCYNL------------------------------------------------------------ 80 (161)
T ss_dssp TCT--CEE---TT-S-EEEG------------------------------------------------------------
T ss_pred hcccccccccCCCCCceeec------------------------------------------------------------
Confidence 0000 001122334455542
Q ss_pred cCCCCCCcccccccccccCCCCcEEEEEC-CEEEeeCccceEEEecCCcceEEeecc
Q 011143 419 CDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEVWLYADFEGSMLHLVKK 474 (492)
Q Consensus 419 c~~~~~~~~~~~~~c~~~~~~p~i~~~~~-g~~~~l~~~~y~~~~~~~~~~~~~~~~ 474 (492)
+... .=.....+|+|+|+|. |+.++|+|++|+++...+..|+.+...
T Consensus 81 ----~~~~-----~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~ 128 (161)
T PF14541_consen 81 ----SSFG-----VNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPS 128 (161)
T ss_dssp ----GCS------EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEE
T ss_pred ----cccc-----cccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEcc
Confidence 2110 0012347999999996 899999999999999877777777766
No 27
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=98.11 E-value=2e-06 Score=59.35 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=36.3
Q ss_pred ccchhhHHHHHHHHHHhhhcccHHHHHHHHHhhcCCCC
Q 011143 386 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 423 (492)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (492)
..|.+|+++|.+++++|..|.|.+||.++|++.|..+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 47999999999999999999999999999999999886
No 28
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.93 E-value=3.1e-05 Score=63.66 Aligned_cols=92 Identities=21% Similarity=0.368 Sum_probs=64.9
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCee-EEEEEEeEeE
Q 011143 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAI-SGFFSQDNVK 166 (492)
Q Consensus 88 ~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv-~G~~~~Dtv~ 166 (492)
.|++++.|+ ++++++++|||++.+|+...... .+.. . ........+...+|.. ......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~~--~---------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLGL--P---------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcCC--C---------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 589999999 69999999999999999764321 1110 0 1112345566677764 4555688999
Q ss_pred eeeeeeecceEEEEEecccccccccccceEEeccc
Q 011143 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (492)
Q Consensus 167 lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~ 201 (492)
+|+..++++.+........ ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999888877754321 4689999863
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.15 E-value=0.0028 Score=55.27 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=66.8
Q ss_pred EeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeE-
Q 011143 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAIS- 157 (492)
Q Consensus 79 ~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~- 157 (492)
+++.-..++.|++++.|. ++++.+++|||++.+-++...-. .-..++.. ......+.-..|...
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 455556688999999998 58999999999999987543211 00111111 112333444556653
Q ss_pred EEEEEeEeEeeeeeeecceEEEEEecccccccccccceEEeccc
Q 011143 158 GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (492)
Q Consensus 158 G~~~~Dtv~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~ 201 (492)
..+.-|.+++|+..++|..+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 456889999999999999977664321 1279999974
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.50 E-value=0.016 Score=46.66 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=53.3
Q ss_pred EEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCee-EEEEEEeEeEeee
Q 011143 91 GEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAI-SGFFSQDNVKVGD 169 (492)
Q Consensus 91 ~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv-~G~~~~Dtv~lg~ 169 (492)
+++.|+ ++++++++|||++.+.+...... .-...+... .....+.-.+|.. ......+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~-------~l~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK-------KLGLKPRPK------SVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH-------HcCCCCcCC------ceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 356777 58999999999998887654331 000111111 1112333344443 3455666899999
Q ss_pred eeeecceEEEEEecccccccccccceEEecc
Q 011143 170 LVVKNQDFIEATKEASITFLAAKFDGILGLG 200 (492)
Q Consensus 170 ~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG 200 (492)
..+.+..|.... .....+||||+-
T Consensus 66 ~~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 888888776655 123568999974
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.26 E-value=0.22 Score=50.98 Aligned_cols=195 Identities=20% Similarity=0.244 Sum_probs=100.5
Q ss_pred EEEEEEcCCC----ceEE-EEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEEEEEEeE
Q 011143 90 FGEVSIGTPS----QTFT-VIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDN 164 (492)
Q Consensus 90 ~~~I~IGTP~----Q~~~-v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~~~Dt 164 (492)
++.|+|=.|+ |++. |++||||.-+-|..+.-... ..+......+..-.-.+ -..|++|..=|-+.+..
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~----l~~~Lp~~t~~g~~laE---C~~F~sgytWGsVr~Ad 97 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS----LAGSLPQQTGGGAPLAE---CAQFASGYTWGSVRTAD 97 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh----hhccCCcccCCCcchhh---hhhccCcccccceEEEE
Confidence 4444443332 4554 99999999888765432100 00011111111001111 13577777678899999
Q ss_pred eEeeeeeeecceEEEEEecc-----------c---ccccccccceEEeccccccccC----------------cc---Cc
Q 011143 165 VKVGDLVVKNQDFIEATKEA-----------S---ITFLAAKFDGILGLGFQEISIG----------------KA---IP 211 (492)
Q Consensus 165 v~lg~~~v~~~~Fg~a~~~~-----------~---~~~~~~~~dGILGLG~~~~s~~----------------~~---~~ 211 (492)
|+|++....+..+-+..+.. + .......++||||+|.-..... .. ++
T Consensus 98 V~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sCt~ 177 (370)
T PF11925_consen 98 VTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSCTS 177 (370)
T ss_pred EEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCeec
Confidence 99998765555554443210 0 0112456799999996533220 01 01
Q ss_pred hhhhhhhcCCCCCCeEEEEecCCC------------CCCCCeeEEECccCCCC---cccccEEEecccccceEEEeeeEE
Q 011143 212 VWYNMLDQGLVKEPVFSFWLNRDI------------EGEEGGEIVFGGVDPDH---YKGEHTYVPVTKKGYWQFEMGDVL 276 (492)
Q Consensus 212 ~~~~L~~qg~I~~~~FSl~L~~~~------------~~~~~G~L~fGgiD~~~---y~G~l~~~pv~~~~~w~v~l~~i~ 276 (492)
.-..+-+ .+..|+..|-.+++. .....|.|+||= ++.. ..+.....+..+.++..- .
T Consensus 178 t~v~~~~--QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGI-gTQsNN~l~~~~~~~~~~~~G~~tt-----~ 249 (370)
T PF11925_consen 178 TTVPLAQ--QVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGI-GTQSNNALPSGATVLTTDSNGDFTT-----T 249 (370)
T ss_pred ccchhhh--cccCcccccCccCCeEEEecCCCCCCCCccceEEEEEec-CCcccCcccccceEEeecCCceEEE-----E
Confidence 1111222 244566555433321 223479999993 2221 223245556666665322 3
Q ss_pred EcCeeeeecCCCceEEEcCCcccccccHH
Q 011143 277 IDGETTGYCSTGCNAIADSGTSLLAGPTT 305 (492)
Q Consensus 277 vgg~~~~~~~~~~~aiiDTGTt~i~lP~~ 305 (492)
.+|.... ...||||+.-.++|..
T Consensus 250 ~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 250 FNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred ecCceee------eeeEecCCceeeccCC
Confidence 4444332 2499999999988854
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.00 E-value=0.16 Score=44.26 Aligned_cols=92 Identities=21% Similarity=0.286 Sum_probs=57.4
Q ss_pred CCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEE-EEecCCe--eEEEEE
Q 011143 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAA-IQYGTGA--ISGFFS 161 (492)
Q Consensus 85 ~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~-~~Yg~Gs--v~G~~~ 161 (492)
....+++++.|+ ++++++++|||++..++...-+. .+.-. .... ..+. ...+.|. ..|...
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl~----~~~~-------~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGLM----RLID-------KRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCCc----cccC-------cceEEEEecCCCcEEEeEEE
Confidence 345789999999 68999999999999988654321 11110 0011 1111 1233232 457777
Q ss_pred EeEeEeeeeeeecceEEEEEecccccccccccceEEeccc
Q 011143 162 QDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (492)
Q Consensus 162 ~Dtv~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~ 201 (492)
.+.+.+++...+ ..|.+... ...|+|||+-+
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~ 107 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLED--------DDVDFLIGLDM 107 (124)
T ss_pred EEEEEECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence 788999998764 55554421 24689999863
No 33
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=93.98 E-value=0.058 Score=41.85 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=40.6
Q ss_pred cchhhHHHHHHHHHHhhhcccHHHHHHHHHhhcCCCCCCccccccccccc
Q 011143 387 MCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNL 436 (492)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~ 436 (492)
.|.+|+.+|..+++.+..+.+.+++.++++..|..++. .+.-.|..+
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~~---~~~~~C~~~ 48 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLPK---SLSDQCKEF 48 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCH---HHHHHHHHH
Confidence 69999999999999999999999999999999999982 333467654
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.29 E-value=0.39 Score=39.22 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=46.1
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCe---eEEEEEEeEe
Q 011143 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA---ISGFFSQDNV 165 (492)
Q Consensus 89 Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gs---v~G~~~~Dtv 165 (492)
|++++.|+ ++++.+++||||+..++....+. ....+.. ......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~~------~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPPL------KPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCcc------ccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889998 69999999999999999765442 1111101 1122333334444 35766 7889
Q ss_pred EeeeeeeecceEEEEE
Q 011143 166 KVGDLVVKNQDFIEAT 181 (492)
Q Consensus 166 ~lg~~~v~~~~Fg~a~ 181 (492)
++++.+. ...|-...
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998763 34444443
No 35
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=93.22 E-value=0.57 Score=44.13 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=66.4
Q ss_pred CcceEeccccCCceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCC
Q 011143 75 DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG 154 (492)
Q Consensus 75 ~~~~~pl~n~~d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~G 154 (492)
+...+.|....++.|.++..|- +|+++.++|||-+.+-++...-. .--++.... +.++.+.-.+|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~l------~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNSL------DYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCcccc------CCceEEEccCC
Confidence 3457888888999999999998 79999999999999888654321 123444322 34455666788
Q ss_pred eeE-EEEEEeEeEeeeeeeecceEEEE
Q 011143 155 AIS-GFFSQDNVKVGDLVVKNQDFIEA 180 (492)
Q Consensus 155 sv~-G~~~~Dtv~lg~~~v~~~~Fg~a 180 (492)
... -.+-.|.|.||+..+.|+.--++
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhhee
Confidence 764 46788999999998888764433
No 36
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=91.18 E-value=0.053 Score=36.18 Aligned_cols=33 Identities=52% Similarity=1.148 Sum_probs=31.1
Q ss_pred ccccccccchhhHHHHHHhhcCccccccccccc
Q 011143 323 ECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355 (492)
Q Consensus 323 ~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c 355 (492)
.|+..+..|++.+++.+.+...|+.+|...|+|
T Consensus 3 ~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 3 ECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 488889999999999999999999999999998
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.59 E-value=1.5 Score=35.39 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=46.3
Q ss_pred EEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCeeEEEE-EEe-EeEeee
Q 011143 92 EVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFF-SQD-NVKVGD 169 (492)
Q Consensus 92 ~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gsv~G~~-~~D-tv~lg~ 169 (492)
.+.|. ++++++++|||++.+-+...... .... ..+...+.=..|...-.+ ..+ .+.+++
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~--------~~~~---------~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP--------KQEL---------STTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh--------hccC---------CCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 45565 69999999999999999765542 0010 112223333333321111 122 699999
Q ss_pred eeeecceEEEEEecccccccccccceEEeccc
Q 011143 170 LVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (492)
Q Consensus 170 ~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG~ 201 (492)
..+.+ .|...... .++|||+-+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 88875 34443221 278999854
No 38
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=90.13 E-value=0.14 Score=32.74 Aligned_cols=24 Identities=33% Similarity=0.221 Sum_probs=17.0
Q ss_pred eEEEeeeecCcchhhhcccCcccc
Q 011143 30 LVRIGLRKKKLDQINRLVGQTVSK 53 (492)
Q Consensus 30 ~~ripL~r~~~~~~~~~~~~~~~~ 53 (492)
++||||+|.++.|+.+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999999999888765
No 39
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.38 E-value=2.3 Score=33.16 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=28.8
Q ss_pred CceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCC
Q 011143 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 120 (492)
Q Consensus 86 d~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C 120 (492)
...+++++.|| ++.+..++|||++...|+.+.+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 56899999999 5999999999999998876554
No 40
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=80.97 E-value=3.1 Score=36.04 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=28.6
Q ss_pred cccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHH
Q 011143 264 KKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 264 ~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
..+++.+. +.|||+.+ .++||||++.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 44555544 57888754 489999999999999988775
No 41
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=79.51 E-value=1.9 Score=41.39 Aligned_cols=98 Identities=28% Similarity=0.552 Sum_probs=69.4
Q ss_pred ccccccccchhhHHHHHHhhcCcccccccccccccCCCcCcccccce-eeccCCCCCCCCCCCCccchhhHHHHHHHHHH
Q 011143 323 ECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIES-VIDKSSDKSSDGVHDSAMCSACEMAVIWMQNK 401 (492)
Q Consensus 323 ~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (492)
.|...+..|+..+++.+.+.+.|+.+|.-+++|.- +...-+ +.... .+ ..+|-+|..+|..++..
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~------~~~~~~~~~~~~-------~~-~~~C~~C~~~V~~~~~~ 143 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSA------SAGPVSEVFASQ-------PA-AGECELCRETVTEADTK 143 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCc------ccchhhhhhhhc-------cc-ccccHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999973 111111 11111 12 67999999999999999
Q ss_pred hhh-cccHHHHHHHHHhhcCCCCCCcccccccccccCC
Q 011143 402 LRR-NETADQILNYVNQLCDRLPSPNGESAVDCDNLSS 438 (492)
Q Consensus 402 ~~~-~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~ 438 (492)
|.. +++...+-.-....|..++ .|.=.|+++..
T Consensus 144 l~d~~~~k~~~~~~~~~~ck~l~----~~~~~Ck~fV~ 177 (218)
T KOG1340|consen 144 LQDKPKTKGKIVSLLLKSCKSLP----NYEQKCKQFVH 177 (218)
T ss_pred cccchhHHHHHHHHHHhhccCCc----cchhHHHHHHH
Confidence 999 4454445555556674333 23335887653
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=78.53 E-value=2.5 Score=33.55 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=23.8
Q ss_pred EEEcCeeeeecCCCceEEEcCCcccccccHHHHHHH
Q 011143 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 275 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
+.|||+.+ .+++|||++...++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56777654 589999999999999888776
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=75.91 E-value=4.2 Score=31.66 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=25.4
Q ss_pred eEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHH
Q 011143 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
.+.|+|..+ .+++|||++-.+++.+..+++
T Consensus 12 ~~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 357788665 399999999999999999887
No 44
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=73.95 E-value=4.3 Score=32.93 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=25.8
Q ss_pred eEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHH
Q 011143 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (492)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~ 311 (492)
.+.|||+.+. +++|||++...++++.+.++-
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHhC
Confidence 3678888764 899999999999999988763
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=72.46 E-value=5.6 Score=32.67 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=23.6
Q ss_pred EEEEEEcCCCceEEEEEeCCCCceeeeCCCC
Q 011143 90 FGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 120 (492)
Q Consensus 90 ~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C 120 (492)
+.+|.|. ++++++++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5677777 5899999999999988876544
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=68.51 E-value=7.6 Score=31.07 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.8
Q ss_pred eEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHH
Q 011143 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
.+.||++.+ .+++|||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 356776554 589999999999999887765
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.97 E-value=6.2 Score=31.80 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=24.7
Q ss_pred EEEcCeeeeecCCCceEEEcCCcccccccHHHHHHH
Q 011143 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 275 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
+.|||+.+ .+++|||.+.+.++++..+++
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 56778765 489999999999999999876
No 48
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=60.24 E-value=9.8 Score=32.95 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=23.6
Q ss_pred EEEcCeeeeecCCCceEEEcCCcccccccHHHHHHH
Q 011143 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 275 i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
+.|||..+ .+++|||++...++++..+++
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHHc
Confidence 46777654 489999999999999988763
No 49
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.26 E-value=5.9 Score=32.95 Aligned_cols=8 Identities=25% Similarity=0.276 Sum_probs=5.5
Q ss_pred CCcccchH
Q 011143 1 MGTKFTAI 8 (492)
Q Consensus 1 M~~~~~~~ 8 (492)
|+++..++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 88776555
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=53.32 E-value=28 Score=30.46 Aligned_cols=90 Identities=21% Similarity=0.341 Sum_probs=48.3
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCe--eEEEEEEeE
Q 011143 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA--ISGFFSQDN 164 (492)
Q Consensus 87 ~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gs--v~G~~~~Dt 164 (492)
...|+++.|+ +++++.++|||...+-+.. .|. ..|.-...-+.. .-...+|-|+ +.|.+..-.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~-~~a--~r~gL~~lid~r----------~~g~a~GvG~~~i~G~Ih~~~ 87 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSK-SCA--ERCGLMRLIDKR----------FAGVAKGVGTQKILGRIHSVQ 87 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEH-HHH--HHTTGGGGEEGG----------G-EE-------EEEEEEEEEE
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCH-HHH--HHcCChhhcccc----------ccccccCCCcCceeEEEEEEE
Confidence 4689999999 5999999999999987754 331 345422211110 0112344454 678888888
Q ss_pred eEeeeeeeecceEEEEEecccccccccccceEEecc
Q 011143 165 VKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200 (492)
Q Consensus 165 v~lg~~~v~~~~Fg~a~~~~~~~~~~~~~dGILGLG 200 (492)
+.+|+..++ ..|-+... ...+=+|||-
T Consensus 88 l~ig~~~~~-~s~~Vle~--------~~~d~llGld 114 (124)
T PF09668_consen 88 LKIGGLFFP-CSFTVLED--------QDVDLLLGLD 114 (124)
T ss_dssp EEETTEEEE-EEEEEETT--------SSSSEEEEHH
T ss_pred EEECCEEEE-EEEEEeCC--------CCcceeeeHH
Confidence 999886554 34433331 2235667763
No 51
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=52.84 E-value=17 Score=29.62 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.9
Q ss_pred EEEEcCCCceEEEEEeCCCCceeeeCCCC
Q 011143 92 EVSIGTPSQTFTVIFDTGSSNLWVPSAKC 120 (492)
Q Consensus 92 ~I~IGTP~Q~~~v~lDTGSs~~WV~s~~C 120 (492)
++.|+ +|.+.+++|||+.++-+.....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccccc
Confidence 45666 6999999999999999975443
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=51.95 E-value=28 Score=33.03 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=29.3
Q ss_pred ccceEEEeeeEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHHHH
Q 011143 265 KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINH 312 (492)
Q Consensus 265 ~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~ 312 (492)
+|++.+ ...|||+.+. .++|||.|.+.++++..+++-=
T Consensus 103 ~GHF~a---~~~VNGk~v~-------fLVDTGATsVal~~~dA~RlGi 140 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD-------FLVDTGATSVALNEEDARRLGI 140 (215)
T ss_pred CCcEEE---EEEECCEEEE-------EEEecCcceeecCHHHHHHhCC
Confidence 344443 3588998875 7999999999999998877643
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=47.94 E-value=22 Score=32.56 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=22.8
Q ss_pred EEEEEEcCCCceEEEEEeCCCCceeeeCC
Q 011143 90 FGEVSIGTPSQTFTVIFDTGSSNLWVPSA 118 (492)
Q Consensus 90 ~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~ 118 (492)
...+.++.-+.+++++|||||+..++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555556679999999999999888754
No 54
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=47.15 E-value=1.2e+02 Score=26.70 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.9
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeeeCC
Q 011143 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSA 118 (492)
Q Consensus 87 ~~Y~~~I~IGTP~Q~~~v~lDTGSs~~WV~s~ 118 (492)
..-.+.+.|.+ ++..+++|+|++..+|...
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 34678888885 9999999999999988653
No 55
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=46.44 E-value=16 Score=29.88 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=21.5
Q ss_pred eEEEcCeeeeecCCCceEEEcCCcccccccHHHH
Q 011143 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTII 307 (492)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~ 307 (492)
.|.++|+.+ .++||||+....+|.+.+
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccc
Confidence 467777765 499999999999997644
No 56
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=42.77 E-value=26 Score=28.72 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.1
Q ss_pred ceEEEcCCcccccccHHHHHHHH
Q 011143 289 CNAIADSGTSLLAGPTTIITQIN 311 (492)
Q Consensus 289 ~~aiiDTGTt~i~lP~~~~~~l~ 311 (492)
..+.+|||++...+|...++.+-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 45899999999999999888775
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=41.41 E-value=19 Score=30.46 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.8
Q ss_pred CceEEEcCCccccc-ccHHHHHHH
Q 011143 288 GCNAIADSGTSLLA-GPTTIITQI 310 (492)
Q Consensus 288 ~~~aiiDTGTt~i~-lP~~~~~~l 310 (492)
...+++|||.+... +|.++++++
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHc
Confidence 45689999999886 999888763
No 58
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=41.14 E-value=30 Score=30.21 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=23.4
Q ss_pred eEEEcCeeeeecCCCceEEEcCCcccccccHHHHHHH
Q 011143 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (492)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 310 (492)
.+++||+.+. |+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 4678888764 99999999999999988873
No 59
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=38.24 E-value=10 Score=28.77 Aligned_cols=37 Identities=41% Similarity=0.996 Sum_probs=32.6
Q ss_pred ceecccccccccchhhHHHHHHhhcCccccccccccc
Q 011143 319 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355 (492)
Q Consensus 319 ~~~~~C~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~c 355 (492)
.+...|...+..|++..++...+...|+.+|...|+|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 3456799999999999999999988899999999988
No 60
>PRK02710 plastocyanin; Provisional
Probab=37.29 E-value=43 Score=28.78 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=19.2
Q ss_pred CCcccchHHHHHHHHHHHHhhhhhcCCCceEEEee
Q 011143 1 MGTKFTAIRVALFLFLILSPAAFALPNDGLVRIGL 35 (492)
Q Consensus 1 M~~~~~~~~~~l~~~~ll~~~~~a~s~~~~~ripL 35 (492)
|++++++++++++++++.+++.+..+.+..++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 77777776434444444444444444555666655
No 61
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=32.59 E-value=74 Score=25.18 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHhhcCCCCCCcccccccccccCCCCcEEEEECCEEEeeCccce
Q 011143 406 ETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEV 458 (492)
Q Consensus 406 ~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~i~~~~~g~~~~l~~~~y 458 (492)
.|.++++..+|..|..- +. +|.-+++--.++|.|+|..+.+.-..+
T Consensus 15 Ps~e~i~~aIE~YC~~~----~~---~l~Fisr~~Pi~~~idg~lYev~i~~~ 60 (74)
T PF14201_consen 15 PSKEEICEAIEKYCIKN----GE---SLEFISRDKPITFKIDGVLYEVEIDEE 60 (74)
T ss_pred CCHHHHHHHHHHHHHHc----CC---ceEEEecCCcEEEEECCeEEEEEEEee
Confidence 58999999999999733 32 666666544499999999887765443
No 62
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=31 Score=30.00 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.6
Q ss_pred EEEcCCcc-cccccHHHHHHHHH
Q 011143 291 AIADSGTS-LLAGPTTIITQINH 312 (492)
Q Consensus 291 aiiDTGTt-~i~lP~~~~~~l~~ 312 (492)
.+||||.+ ++.+|.++++++..
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCC
Confidence 48999988 99999999887643
No 63
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=29.42 E-value=43 Score=27.54 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=16.5
Q ss_pred CCceEEEcCCcccccccHHH
Q 011143 287 TGCNAIADSGTSLLAGPTTI 306 (492)
Q Consensus 287 ~~~~aiiDTGTt~i~lP~~~ 306 (492)
....+++|||++.+++|...
T Consensus 10 q~~~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 10 QTFNVLLDTGSSNLWVPSVD 29 (109)
T ss_pred ceEEEEEeCCCCCEEEeCCC
Confidence 45679999999999998653
No 64
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=27.65 E-value=1.4e+02 Score=30.33 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.3
Q ss_pred HHHhhhcccHHHHHHHHHhhcC
Q 011143 399 QNKLRRNETADQILNYVNQLCD 420 (492)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~ 420 (492)
-|+|.+|++++|+..||-++|+
T Consensus 133 inqlvrnGseeQkekylPkl~s 154 (421)
T KOG0141|consen 133 INQLVRNGSEEQKEKYLPKLIS 154 (421)
T ss_pred HHHHHhcCCHHHHHhhhhhhhc
Confidence 4899999999999999999985
No 65
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=21.96 E-value=1e+02 Score=25.92 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=38.7
Q ss_pred EEEEEcCCC----ceEEEEEeCCCCcee-eeCCCCCCCcCCCCCCCCCCCCCCceeECCeeEEEEecCCe-eEEEEEEeE
Q 011143 91 GEVSIGTPS----QTFTVIFDTGSSNLW-VPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDN 164 (492)
Q Consensus 91 ~~I~IGTP~----Q~~~v~lDTGSs~~W-V~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Yg~Gs-v~G~~~~Dt 164 (492)
+++.|..|. -++.+++|||.+..- ++...-. .-..++.. .....-++|. +.-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 567777772 368899999999764 4432210 01112211 1234456665 455667888
Q ss_pred eEeeeeee
Q 011143 165 VKVGDLVV 172 (492)
Q Consensus 165 v~lg~~~v 172 (492)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998755
No 66
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=21.11 E-value=1.3e+02 Score=29.16 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=31.3
Q ss_pred ceEeccccCCceEEEE---EEEcC-----CCceEEEEEeCCCCceeeeCCCC
Q 011143 77 DIVALNNFMDAQYFGE---VSIGT-----PSQTFTVIFDTGSSNLWVPSAKC 120 (492)
Q Consensus 77 ~~~pl~n~~d~~Y~~~---I~IGT-----P~Q~~~v~lDTGSs~~WV~s~~C 120 (492)
..+|+.......|.+. |.+|. ......+++|||++.+++|...+
T Consensus 170 ~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 170 TYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred EEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 4566666445566654 56775 24678999999999999987644
Done!