Query 011145
Match_columns 492
No_of_seqs 210 out of 1410
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:37:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 4E-138 1E-142 1067.7 40.7 463 20-486 33-511 (524)
2 PLN02998 beta-glucosidase 100.0 1E-131 3E-136 1048.9 45.2 455 19-489 26-493 (497)
3 PLN02814 beta-glucosidase 100.0 2E-131 4E-136 1049.0 45.6 453 19-490 23-489 (504)
4 PLN02849 beta-glucosidase 100.0 2E-131 4E-136 1048.8 45.2 451 17-486 23-485 (503)
5 PRK13511 6-phospho-beta-galact 100.0 4E-129 8E-134 1029.4 45.5 451 22-487 3-469 (469)
6 TIGR01233 lacG 6-phospho-beta- 100.0 3E-128 6E-133 1020.3 45.5 444 23-486 3-466 (467)
7 COG2723 BglB Beta-glucosidase/ 100.0 3E-128 6E-133 989.2 39.7 448 22-486 2-455 (460)
8 PRK09593 arb 6-phospho-beta-gl 100.0 1E-127 3E-132 1016.7 45.8 448 21-486 3-475 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 5E-127 1E-131 1012.3 45.7 446 23-486 3-474 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 1E-128 2E-133 1026.6 33.1 447 22-485 3-454 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 2E-126 4E-131 1007.3 46.4 449 20-487 2-476 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 6E-126 1E-130 1001.2 46.0 446 23-486 3-471 (474)
13 TIGR03356 BGL beta-galactosida 100.0 2E-122 4E-127 968.8 42.5 427 24-477 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.7 1.1E-14 2.4E-19 143.6 23.4 250 98-476 1-253 (254)
15 PF00150 Cellulase: Cellulase 99.5 7.6E-12 1.6E-16 124.1 21.7 109 78-190 22-134 (281)
16 PF07745 Glyco_hydro_53: Glyco 99.3 8E-10 1.7E-14 112.1 24.2 265 80-458 27-319 (332)
17 PF02449 Glyco_hydro_42: Beta- 99.3 1.1E-11 2.4E-16 129.0 9.4 109 77-190 10-141 (374)
18 PF00331 Glyco_hydro_10: Glyco 99.1 1.2E-08 2.7E-13 103.9 23.8 304 24-479 6-318 (320)
19 PF01229 Glyco_hydro_39: Glyco 99.1 1.7E-09 3.7E-14 116.4 16.6 293 78-480 40-359 (486)
20 PRK10150 beta-D-glucuronidase; 99.1 2.9E-08 6.2E-13 109.9 24.3 264 77-483 313-594 (604)
21 COG3693 XynA Beta-1,4-xylanase 99.0 1.2E-07 2.6E-12 93.8 22.8 269 97-483 66-343 (345)
22 COG1874 LacA Beta-galactosidas 98.6 1.1E-07 2.3E-12 104.2 7.5 120 78-202 31-177 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.3 8.7E-06 1.9E-10 82.2 13.2 93 75-187 34-132 (298)
24 COG3867 Arabinogalactan endo-1 98.1 0.00092 2E-08 65.8 22.8 289 80-479 66-393 (403)
25 COG2730 BglC Endoglucanase [Ca 97.9 4.8E-05 1E-09 80.2 8.8 117 72-189 63-193 (407)
26 PF11790 Glyco_hydro_cc: Glyco 97.8 0.00036 7.9E-09 68.2 13.2 64 369-444 152-215 (239)
27 PF01301 Glyco_hydro_35: Glyco 97.6 0.00044 9.6E-09 70.5 10.4 109 78-188 25-151 (319)
28 PF14587 Glyco_hydr_30_2: O-Gl 97.3 0.0087 1.9E-07 61.8 16.4 99 87-188 57-184 (384)
29 PLN03059 beta-galactosidase; P 97.2 0.0042 9E-08 69.9 12.9 110 77-188 59-188 (840)
30 PF03198 Glyco_hydro_72: Gluca 97.1 0.048 1E-06 54.8 18.6 88 78-186 54-144 (314)
31 PRK10340 ebgA cryptic beta-D-g 97.0 0.052 1.1E-06 63.8 20.5 92 75-187 353-450 (1021)
32 PF01373 Glyco_hydro_14: Glyco 96.5 0.0027 5.8E-08 65.8 4.3 107 76-189 15-152 (402)
33 PLN02803 beta-amylase 96.4 0.009 1.9E-07 63.5 7.4 107 77-189 107-252 (548)
34 PLN02161 beta-amylase 96.3 0.011 2.4E-07 62.6 7.6 111 73-189 113-262 (531)
35 PLN00197 beta-amylase; Provisi 96.0 0.023 5E-07 60.7 8.4 107 77-189 127-272 (573)
36 PLN02801 beta-amylase 95.8 0.04 8.7E-07 58.4 9.2 109 76-189 36-183 (517)
37 PF13204 DUF4038: Protein of u 95.6 0.06 1.3E-06 54.2 9.2 104 79-187 32-156 (289)
38 PLN02905 beta-amylase 95.5 0.052 1.1E-06 58.8 8.6 111 73-188 282-431 (702)
39 PLN02705 beta-amylase 95.4 0.071 1.5E-06 57.6 9.1 109 75-188 266-413 (681)
40 KOG0496 Beta-galactosidase [Ca 95.2 0.074 1.6E-06 58.0 8.7 96 78-175 50-156 (649)
41 PF14488 DUF4434: Domain of un 94.3 0.24 5.3E-06 45.6 8.7 102 77-188 20-131 (166)
42 PRK09525 lacZ beta-D-galactosi 93.0 0.35 7.7E-06 57.0 9.1 91 75-188 369-464 (1027)
43 COG3250 LacZ Beta-galactosidas 92.1 0.6 1.3E-05 53.4 9.0 91 72-188 316-408 (808)
44 COG3664 XynB Beta-xylosidase [ 90.1 0.58 1.3E-05 48.6 5.8 99 86-190 14-117 (428)
45 COG3934 Endo-beta-mannanase [C 89.7 0.14 3E-06 53.9 1.1 109 79-189 28-150 (587)
46 PF07488 Glyco_hydro_67M: Glyc 86.5 7.3 0.00016 39.2 10.7 87 76-176 56-150 (328)
47 PF12891 Glyco_hydro_44: Glyco 80.3 11 0.00024 36.8 8.9 73 118-190 24-138 (239)
48 PF10566 Glyco_hydro_97: Glyco 80.1 9 0.0002 38.2 8.5 120 50-173 9-149 (273)
49 PF14871 GHL6: Hypothetical gl 78.2 9.4 0.0002 33.8 7.2 93 81-174 4-123 (132)
50 PF02638 DUF187: Glycosyl hydr 75.8 11 0.00024 38.4 8.0 100 76-175 18-154 (311)
51 smart00642 Aamy Alpha-amylase 75.5 8.7 0.00019 35.3 6.6 65 75-139 17-91 (166)
52 KOG2233 Alpha-N-acetylglucosam 73.6 15 0.00031 39.3 8.1 111 76-187 77-248 (666)
53 PF00332 Glyco_hydro_17: Glyco 73.1 2.8 6E-05 42.7 2.9 80 371-461 213-301 (310)
54 TIGR03581 EF_0839 conserved hy 71.1 13 0.00029 35.5 6.6 78 73-163 131-230 (236)
55 COG3534 AbfA Alpha-L-arabinofu 70.9 72 0.0016 34.0 12.5 86 80-187 52-174 (501)
56 PF12876 Cellulase-like: Sugar 70.7 9 0.0002 31.1 4.9 19 170-188 1-22 (88)
57 PF05089 NAGLU: Alpha-N-acetyl 68.7 35 0.00076 35.0 9.5 109 76-187 18-184 (333)
58 cd07945 DRE_TIM_CMS Leptospira 65.2 17 0.00037 36.4 6.5 83 78-172 75-158 (280)
59 PRK05799 coproporphyrinogen II 63.1 16 0.00034 38.0 6.1 93 79-190 98-195 (374)
60 PLN02361 alpha-amylase 60.6 20 0.00043 37.9 6.3 66 74-139 26-97 (401)
61 PLN02746 hydroxymethylglutaryl 59.4 24 0.00051 36.6 6.5 84 79-172 123-208 (347)
62 TIGR01210 conserved hypothetic 58.8 39 0.00085 34.3 8.0 108 80-202 117-229 (313)
63 cd07948 DRE_TIM_HCS Saccharomy 58.1 16 0.00035 36.2 4.9 59 80-139 74-133 (262)
64 PF02055 Glyco_hydro_30: O-Gly 57.7 2.9E+02 0.0062 30.2 21.9 99 373-482 319-421 (496)
65 PF00128 Alpha-amylase: Alpha 56.8 21 0.00045 35.1 5.6 59 80-139 7-73 (316)
66 TIGR02090 LEU1_arch isopropylm 56.4 25 0.00055 36.5 6.2 60 79-139 73-133 (363)
67 PRK12581 oxaloacetate decarbox 56.0 32 0.0007 37.0 7.0 72 75-172 98-174 (468)
68 PF07071 DUF1341: Protein of u 55.1 14 0.0003 35.0 3.5 71 59-136 115-207 (218)
69 cd06593 GH31_xylosidase_YicI Y 54.6 67 0.0015 32.4 8.9 107 78-188 25-161 (308)
70 cd03174 DRE_TIM_metallolyase D 53.9 31 0.00067 33.6 6.2 64 80-144 77-141 (265)
71 cd07939 DRE_TIM_NifV Streptomy 53.6 17 0.00037 35.7 4.3 58 80-138 72-130 (259)
72 cd06592 GH31_glucosidase_KIAA1 52.8 77 0.0017 32.0 8.9 107 78-188 31-167 (303)
73 PLN00196 alpha-amylase; Provis 52.6 26 0.00057 37.3 5.7 67 75-141 42-117 (428)
74 PRK14041 oxaloacetate decarbox 51.9 40 0.00087 36.4 6.9 72 75-172 88-164 (467)
75 PRK05402 glycogen branching en 51.4 90 0.0019 35.7 10.1 93 76-175 264-397 (726)
76 PF03659 Glyco_hydro_71: Glyco 51.3 58 0.0013 34.2 7.9 51 77-138 17-67 (386)
77 PRK14040 oxaloacetate decarbox 51.2 43 0.00093 37.3 7.2 52 75-140 90-146 (593)
78 TIGR00433 bioB biotin syntheta 51.2 36 0.00079 33.8 6.3 56 79-138 122-178 (296)
79 PRK09058 coproporphyrinogen II 51.1 48 0.001 35.5 7.5 106 79-201 162-270 (449)
80 TIGR02402 trehalose_TreZ malto 50.2 89 0.0019 34.4 9.5 57 76-139 110-181 (542)
81 cd06601 GH31_lyase_GLase GLase 48.7 94 0.002 32.0 8.8 71 120-192 66-139 (332)
82 PRK05692 hydroxymethylglutaryl 48.6 56 0.0012 32.8 7.1 86 78-173 80-167 (287)
83 cd06591 GH31_xylosidase_XylS X 47.9 1E+02 0.0022 31.4 9.0 79 112-191 60-164 (319)
84 PRK12313 glycogen branching en 47.7 1.1E+02 0.0024 34.3 9.9 93 76-175 169-302 (633)
85 cd06543 GH18_PF-ChiA-like PF-C 47.3 75 0.0016 32.1 7.7 84 84-175 19-104 (294)
86 cd06603 GH31_GANC_GANAB_alpha 46.6 97 0.0021 31.8 8.7 72 120-191 66-167 (339)
87 cd06602 GH31_MGAM_SI_GAA This 45.7 1.1E+02 0.0024 31.4 8.9 107 79-189 26-168 (339)
88 cd07938 DRE_TIM_HMGL 3-hydroxy 45.7 54 0.0012 32.7 6.4 83 80-172 76-160 (274)
89 KOG1065 Maltase glucoamylase a 45.6 86 0.0019 35.9 8.4 105 80-191 314-453 (805)
90 PRK09441 cytoplasmic alpha-amy 44.9 50 0.0011 35.6 6.5 66 74-139 19-102 (479)
91 cd06598 GH31_transferase_CtsZ 44.8 1.4E+02 0.003 30.3 9.4 109 79-190 26-168 (317)
92 TIGR03234 OH-pyruv-isom hydrox 44.0 54 0.0012 31.7 6.1 67 75-144 82-150 (254)
93 PRK11858 aksA trans-homoaconit 43.9 67 0.0014 33.6 7.0 58 80-138 78-136 (378)
94 PRK12331 oxaloacetate decarbox 42.9 76 0.0017 34.1 7.4 51 80-144 99-149 (448)
95 TIGR02660 nifV_homocitr homoci 42.7 63 0.0014 33.6 6.6 80 80-175 75-155 (365)
96 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.5 1.1E+02 0.0024 30.5 8.0 68 79-172 93-160 (275)
97 PRK12399 tagatose 1,6-diphosph 42.0 1.3E+02 0.0028 30.8 8.3 91 83-183 111-204 (324)
98 PRK04161 tagatose 1,6-diphosph 41.2 1.3E+02 0.0029 30.8 8.3 91 82-182 112-205 (329)
99 cd07944 DRE_TIM_HOA_like 4-hyd 41.2 89 0.0019 30.9 7.1 65 80-172 85-149 (266)
100 PRK08599 coproporphyrinogen II 40.9 1.1E+02 0.0025 31.6 8.3 95 79-190 99-196 (377)
101 PRK05474 xylose isomerase; Pro 40.3 4.8E+02 0.01 27.9 12.4 90 79-176 81-180 (437)
102 COG1523 PulA Type II secretory 40.2 53 0.0011 37.2 5.8 57 83-139 206-286 (697)
103 PLN02784 alpha-amylase 40.0 66 0.0014 37.3 6.5 65 74-138 518-588 (894)
104 TIGR00612 ispG_gcpE 1-hydroxy- 39.9 89 0.0019 32.1 6.8 86 71-171 76-161 (346)
105 cd06600 GH31_MGAM-like This fa 38.5 1.8E+02 0.0039 29.5 9.1 106 80-189 27-163 (317)
106 cd02742 GH20_hexosaminidase Be 38.4 74 0.0016 32.1 6.2 64 78-148 17-99 (303)
107 TIGR03471 HpnJ hopanoid biosyn 38.2 1.4E+02 0.0029 32.2 8.5 60 80-144 287-348 (472)
108 TIGR02403 trehalose_treC alpha 38.1 59 0.0013 35.8 5.8 64 75-139 25-96 (543)
109 COG1501 Alpha-glucosidases, fa 37.9 83 0.0018 36.2 7.0 99 89-193 294-422 (772)
110 PRK10933 trehalose-6-phosphate 37.6 64 0.0014 35.6 6.0 63 75-139 31-102 (551)
111 TIGR01515 branching_enzym alph 37.3 2.5E+02 0.0054 31.5 10.6 93 76-175 155-288 (613)
112 TIGR02635 RhaI_grampos L-rhamn 36.8 1.4E+02 0.003 31.4 8.0 89 71-176 35-130 (378)
113 PRK00366 ispG 4-hydroxy-3-meth 36.7 1.8E+02 0.0039 30.2 8.5 74 86-171 97-170 (360)
114 cd06604 GH31_glucosidase_II_Ma 36.6 2.1E+02 0.0047 29.2 9.4 68 120-190 66-163 (339)
115 PRK05692 hydroxymethylglutaryl 36.4 4.5E+02 0.0098 26.3 12.3 94 76-189 119-212 (287)
116 TIGR02630 xylose_isom_A xylose 35.8 5.7E+02 0.012 27.3 12.5 71 80-158 81-156 (434)
117 PRK07379 coproporphyrinogen II 35.6 1.5E+02 0.0033 31.1 8.3 104 79-200 114-221 (400)
118 PRK14706 glycogen branching en 35.5 1.7E+02 0.0038 32.9 9.0 88 84-175 175-299 (639)
119 TIGR01108 oadA oxaloacetate de 35.5 1.1E+02 0.0024 34.0 7.4 52 79-144 93-144 (582)
120 PF03511 Fanconi_A: Fanconi an 35.5 27 0.00059 26.5 1.8 38 101-141 19-56 (64)
121 TIGR00539 hemN_rel putative ox 35.4 1.5E+02 0.0033 30.6 8.1 63 79-145 99-163 (360)
122 cd07947 DRE_TIM_Re_CS Clostrid 35.3 1.2E+02 0.0026 30.4 7.0 59 79-138 76-135 (279)
123 cd06545 GH18_3CO4_chitinase Th 35.1 95 0.0021 30.2 6.2 74 96-175 26-99 (253)
124 PF01055 Glyco_hydro_31: Glyco 35.0 1.8E+02 0.004 30.7 8.9 109 78-190 44-184 (441)
125 PF02065 Melibiase: Melibiase; 34.7 5.7E+02 0.012 27.0 14.3 96 78-179 59-188 (394)
126 COG5309 Exo-beta-1,3-glucanase 33.8 1.4E+02 0.0031 29.7 6.9 53 70-139 56-108 (305)
127 PRK06294 coproporphyrinogen II 33.8 1.5E+02 0.0033 30.8 7.8 94 79-190 102-199 (370)
128 TIGR01232 lacD tagatose 1,6-di 33.5 1.8E+02 0.004 29.7 7.9 91 82-182 111-204 (325)
129 PRK12677 xylose isomerase; Pro 33.1 3.2E+02 0.0068 28.7 10.0 71 79-157 33-104 (384)
130 PRK12858 tagatose 1,6-diphosph 33.1 1.2E+02 0.0026 31.3 6.7 53 83-139 112-164 (340)
131 PRK03705 glycogen debranching 32.9 84 0.0018 35.5 6.0 55 83-139 185-263 (658)
132 TIGR01211 ELP3 histone acetylt 32.9 1.3E+02 0.0028 33.0 7.3 107 80-203 206-317 (522)
133 PRK14511 maltooligosyl trehalo 32.8 1.4E+02 0.003 34.9 7.8 57 76-139 19-90 (879)
134 cd06542 GH18_EndoS-like Endo-b 32.6 1.2E+02 0.0027 29.4 6.6 55 117-175 50-104 (255)
135 cd07943 DRE_TIM_HOA 4-hydroxy- 32.1 2.5E+02 0.0054 27.5 8.7 46 80-139 88-133 (263)
136 PRK12568 glycogen branching en 31.7 2.5E+02 0.0054 32.2 9.4 93 76-175 268-401 (730)
137 PLN02389 biotin synthase 31.3 1.2E+02 0.0027 31.7 6.6 59 77-139 175-234 (379)
138 TIGR03217 4OH_2_O_val_ald 4-hy 30.8 2.3E+02 0.005 29.1 8.4 46 80-139 90-135 (333)
139 cd02803 OYE_like_FMN_family Ol 30.7 4.3E+02 0.0093 26.5 10.4 39 102-141 62-100 (327)
140 PRK10785 maltodextrin glucosid 29.9 1E+02 0.0022 34.4 6.0 54 79-139 181-247 (598)
141 cd07941 DRE_TIM_LeuA3 Desulfob 29.2 82 0.0018 31.3 4.7 60 81-141 82-142 (273)
142 PF02057 Glyco_hydro_59: Glyco 28.8 1.2E+02 0.0027 34.0 6.2 64 122-188 116-184 (669)
143 PRK08195 4-hyroxy-2-oxovalerat 28.8 1.6E+02 0.0035 30.3 6.8 68 80-176 91-158 (337)
144 PF10566 Glyco_hydro_97: Glyco 28.7 1.3E+02 0.0028 30.1 5.9 58 79-148 108-165 (273)
145 TIGR00587 nfo apurinic endonuc 28.7 1.5E+02 0.0032 29.4 6.4 59 79-143 13-71 (274)
146 TIGR02456 treS_nterm trehalose 28.3 99 0.0021 34.0 5.5 62 77-139 28-97 (539)
147 TIGR02401 trehalose_TreY malto 28.1 1.3E+02 0.0028 34.8 6.5 57 76-139 15-86 (825)
148 TIGR02159 PA_CoA_Oxy4 phenylac 28.1 84 0.0018 28.3 4.1 56 70-135 35-91 (146)
149 PRK13398 3-deoxy-7-phosphohept 27.9 2E+02 0.0042 28.6 7.1 72 72-147 36-107 (266)
150 TIGR01212 radical SAM protein, 27.9 2.8E+02 0.0061 27.9 8.4 73 117-202 162-234 (302)
151 cd06525 GH25_Lyc-like Lyc mura 27.5 4.2E+02 0.0091 24.3 8.9 50 82-144 13-62 (184)
152 COG0821 gcpE 1-hydroxy-2-methy 27.5 2.1E+02 0.0046 29.4 7.1 73 86-171 91-163 (361)
153 COG3589 Uncharacterized conser 27.4 1.1E+02 0.0023 31.5 5.0 72 80-166 19-90 (360)
154 PRK05628 coproporphyrinogen II 27.3 2.9E+02 0.0063 28.6 8.6 93 79-190 107-204 (375)
155 PRK09249 coproporphyrinogen II 27.2 2.2E+02 0.0048 30.5 7.9 61 79-145 150-214 (453)
156 PRK09432 metF 5,10-methylenete 27.0 1.5E+02 0.0032 30.0 6.1 73 117-189 188-282 (296)
157 PRK09505 malS alpha-amylase; R 26.7 1.3E+02 0.0028 34.2 6.1 61 79-139 232-313 (683)
158 cd06570 GH20_chitobiase-like_1 26.6 1.8E+02 0.0038 29.6 6.6 65 78-148 19-95 (311)
159 cd06568 GH20_SpHex_like A subg 26.6 1.8E+02 0.0039 29.8 6.8 64 78-148 19-102 (329)
160 PLN02447 1,4-alpha-glucan-bran 26.6 1.5E+02 0.0032 34.2 6.5 94 75-175 248-383 (758)
161 PRK14510 putative bifunctional 26.4 96 0.0021 37.7 5.3 65 75-139 183-268 (1221)
162 PRK14705 glycogen branching en 26.1 4E+02 0.0086 32.6 10.2 92 83-175 772-897 (1224)
163 TIGR02631 xylA_Arthro xylose i 26.1 4E+02 0.0087 27.9 9.3 94 76-177 31-130 (382)
164 PRK05660 HemN family oxidoredu 26.1 2.2E+02 0.0049 29.6 7.5 93 79-189 106-202 (378)
165 PRK09856 fructoselysine 3-epim 25.9 89 0.0019 30.5 4.3 61 74-136 87-147 (275)
166 PF01261 AP_endonuc_2: Xylose 25.5 69 0.0015 29.3 3.3 61 75-136 69-130 (213)
167 PTZ00445 p36-lilke protein; Pr 25.3 85 0.0019 30.2 3.7 52 118-172 29-89 (219)
168 PRK14507 putative bifunctional 25.2 1.9E+02 0.0041 36.4 7.5 66 76-148 757-844 (1693)
169 PF04551 GcpE: GcpE protein; 25.2 4.6E+02 0.0099 27.3 9.2 57 80-149 34-91 (359)
170 cd06565 GH20_GcnA-like Glycosy 25.0 1.9E+02 0.0041 29.2 6.5 63 78-148 18-87 (301)
171 cd06419 GH25_muramidase_2 Unch 24.8 2.9E+02 0.0062 25.9 7.3 26 157-182 109-134 (190)
172 TIGR02629 L_rham_iso_rhiz L-rh 24.8 3E+02 0.0065 29.2 7.9 88 80-182 73-171 (412)
173 cd00927 Cyt_c_Oxidase_VIc Cyto 24.7 35 0.00076 26.7 0.8 19 73-91 46-66 (70)
174 cd06599 GH31_glycosidase_Aec37 24.6 2.1E+02 0.0045 29.0 6.8 110 79-189 31-171 (317)
175 PRK01060 endonuclease IV; Prov 24.5 4.2E+02 0.0092 25.8 8.9 51 79-135 14-64 (281)
176 PF13200 DUF4015: Putative gly 24.5 2.7E+02 0.0059 28.5 7.4 95 77-173 13-136 (316)
177 cd00019 AP2Ec AP endonuclease 23.6 3.4E+02 0.0073 26.6 7.9 54 77-136 10-64 (279)
178 PRK00694 4-hydroxy-3-methylbut 23.3 4E+02 0.0086 29.6 8.7 57 80-149 48-105 (606)
179 PRK09997 hydroxypyruvate isome 23.3 1.9E+02 0.0042 28.0 6.1 65 77-144 85-151 (258)
180 PRK09282 pyruvate carboxylase 23.1 2.5E+02 0.0054 31.4 7.5 48 79-140 98-145 (592)
181 TIGR02058 lin0512_fam conserve 23.1 76 0.0016 27.4 2.7 30 386-428 2-31 (116)
182 PF09585 Lin0512_fam: Conserve 22.8 73 0.0016 27.4 2.5 31 386-429 2-32 (113)
183 PRK07094 biotin synthase; Prov 22.0 1.6E+02 0.0035 29.7 5.4 57 78-138 127-185 (323)
184 PTZ00445 p36-lilke protein; Pr 21.9 1.5E+02 0.0033 28.5 4.7 57 82-139 34-99 (219)
185 cd07938 DRE_TIM_HMGL 3-hydroxy 21.8 7.9E+02 0.017 24.3 12.2 93 77-189 114-206 (274)
186 smart00729 Elp3 Elongator prot 21.7 1.8E+02 0.004 26.2 5.3 59 76-138 96-157 (216)
187 PLN03153 hypothetical protein; 21.2 1.3E+02 0.0029 32.8 4.6 69 126-203 326-401 (537)
188 PRK09936 hypothetical protein; 21.1 4.5E+02 0.0098 26.5 8.0 62 78-148 39-100 (296)
189 PLN02925 4-hydroxy-3-methylbut 20.6 5.6E+02 0.012 29.2 9.3 58 79-149 112-170 (733)
190 TIGR00542 hxl6Piso_put hexulos 20.4 1.7E+02 0.0036 28.8 5.0 60 75-136 92-151 (279)
191 COG2100 Predicted Fe-S oxidore 20.4 2.3E+02 0.005 29.2 5.8 83 73-171 197-284 (414)
192 COG5016 Pyruvate/oxaloacetate 20.3 3.5E+02 0.0075 28.7 7.2 72 75-172 91-167 (472)
193 PF13812 PPR_3: Pentatricopept 20.2 1.1E+02 0.0023 19.0 2.4 15 120-134 20-34 (34)
194 PLN02925 4-hydroxy-3-methylbut 20.2 2.9E+02 0.0063 31.4 7.0 56 116-172 204-263 (733)
195 cd07940 DRE_TIM_IPMS 2-isoprop 20.2 3E+02 0.0066 27.0 6.8 58 80-138 72-134 (268)
196 PRK08446 coproporphyrinogen II 20.2 4.1E+02 0.0088 27.3 8.0 91 80-188 98-192 (350)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-138 Score=1067.67 Aligned_cols=463 Identities=56% Similarity=1.045 Sum_probs=425.8
Q ss_pred CCCCCCCCCeeeeecccccccCCcCCCCCCCccceeccc-cCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeecc
Q 011145 20 SKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH-TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (492)
Q Consensus 20 ~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~-~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si 98 (492)
++.+||++|+||+||||||+|||+++|||++|+||.|+| .|+++.+++++|+|||+||||+|||+|||+||+++|||||
T Consensus 33 ~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSI 112 (524)
T KOG0626|consen 33 SRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSI 112 (524)
T ss_pred cccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEe
Confidence 478999999999999999999999999999999999998 5557778889999999999999999999999999999999
Q ss_pred cccccccCCC--CCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 011145 99 SWSRIFPDGL--GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGD 176 (492)
Q Consensus 99 ~Wsri~P~~~--g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd 176 (492)
+||||+|.|+ + .+|++|++||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++|||
T Consensus 113 sWSRIlP~G~~~~-gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGD 191 (524)
T KOG0626|consen 113 SWSRILPNGRLTG-GVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGD 191 (524)
T ss_pred ehHhhCCCCCcCC-CcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999997 4 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEccCccccccccccccccCCCC---------CCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeec
Q 011145 177 RVKNWITINEPLQTAVNGYCTGIFAPGR---------HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVD 247 (492)
Q Consensus 177 ~v~~w~t~NEp~~~~~~gy~~G~~~pg~---------~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~ 247 (492)
+||+|+|||||++++..||..|..|||+ .+++++++|+|+||||+|||+||++||+.++..|+|+|||+++
T Consensus 192 rVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~ 271 (524)
T KOG0626|consen 192 RVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALS 271 (524)
T ss_pred cceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEe
Confidence 9999999999999999999999999998 3678999999999999999999999999998889999999999
Q ss_pred CceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcCCccEEEEccCCcceeccC
Q 011145 248 CEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHA 327 (492)
Q Consensus 248 ~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg~~DFiGiNyY~~~~v~~~ 327 (492)
..|+.|++.+++|.+||+|+.+|..+||++|++.|+||..|++.+++|||.||++|.+++||+.||+|||||++.+|++.
T Consensus 272 ~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~ 351 (524)
T KOG0626|consen 272 ARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHL 351 (524)
T ss_pred eeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhcc
Confidence 99999999889999999999999999999998899999999999999999999999999999999999999999999986
Q ss_pred CCCCC-CCCccchhhhhhhhhcCCC-ccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCC-CCCc
Q 011145 328 TKSPE-EGSFYEAQEMERLVEWEGG-EVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDS-SPLH 404 (492)
Q Consensus 328 ~~~~~-~~~~~~~d~~~~~~~~~~g-~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~-~~~~ 404 (492)
..+.. ..+.+..|..+.. ..++ .+.++.+...|..++|+||+++|++++++|++|||||||||+++. +.+ .+..
T Consensus 352 ~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~-~~~~~~~~ 428 (524)
T KOG0626|consen 352 KPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDL-DGGTKSLE 428 (524)
T ss_pred CCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcc-cccccchh
Confidence 54221 1122333333222 1222 345556667899999999999999999999999999999999986 432 2445
Q ss_pred cccCChhHHHHHHHHHHHHHHHHH-cCCCEEEEeccccccccccCCCCCCccceEEEeCCCCccceecchHHHHHHHHhc
Q 011145 405 EMLDDKLRVRYFKGYLSAVAQAIK-DGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKNGLVRHPKSSAYWFMRFLKG 483 (492)
Q Consensus 405 ~~i~D~~Ri~yl~~~l~~~~~Ai~-dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~~i~~ 483 (492)
..++|..|++|++.||++|++||. +||||+|||+|||||||||..||+.||||++|||+|+++|+||.|+.||+++++.
T Consensus 429 ~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~ 508 (524)
T KOG0626|consen 429 VALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKG 508 (524)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcC
Confidence 677999999999999999999997 8999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 011145 484 NEE 486 (492)
Q Consensus 484 ~~~ 486 (492)
+..
T Consensus 509 ~~~ 511 (524)
T KOG0626|consen 509 KVK 511 (524)
T ss_pred CCC
Confidence 764
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.2e-131 Score=1048.88 Aligned_cols=455 Identities=47% Similarity=0.894 Sum_probs=404.6
Q ss_pred CCCCCCCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeecc
Q 011145 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (492)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si 98 (492)
+.+.+||++|+||+|||||||||+++++|||+|+||.|++ ++. .+..++++||||||||+|||+|||+||+++|||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeec
Confidence 5567899999999999999999999999999999999998 452 22247899999999999999999999999999999
Q ss_pred cccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 011145 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (492)
Q Consensus 99 ~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v 178 (492)
+||||+|+|.| .+|++|++||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||+.|+++|||+|
T Consensus 104 sWsRI~P~G~g-~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 104 SWSRLLPSGRG-PINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred cHHhcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 99999999877 89999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred cEEEEccCccccccccccccccCCCCCC----------CCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecC
Q 011145 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (492)
Q Consensus 179 ~~w~t~NEp~~~~~~gy~~G~~~pg~~~----------~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~ 248 (492)
++|+|||||++++..||..|.+|||... .+.++.++|+||+++|||+|++++|+.++..|+++||++++.
T Consensus 183 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~ 262 (497)
T PLN02998 183 SHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYT 262 (497)
T ss_pred CEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Confidence 9999999999999999999999999521 123457999999999999999999998655688999999999
Q ss_pred ceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcCCccEEEEccCCcceeccCC
Q 011145 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHAT 328 (492)
Q Consensus 249 ~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg~~DFiGiNyY~~~~v~~~~ 328 (492)
.+++|.+++++|++||++.+++.++||+||+++|+||..|++.+++++|.|+++|+++|++++||||||||++.+|+...
T Consensus 263 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~ 342 (497)
T PLN02998 263 YGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNS 342 (497)
T ss_pred CeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred CC-CCCCCccchhhhhhhhhcCCCccccCccC-CCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccc
Q 011145 329 KS-PEEGSFYEAQEMERLVEWEGGEVIGEKAA-SEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEM 406 (492)
Q Consensus 329 ~~-~~~~~~~~~d~~~~~~~~~~g~~~~~~~~-~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~ 406 (492)
.. ......+..+..... ...+..+. ++| +|+|+||+.+|+++++||++|||||||||+++. + +++
T Consensus 343 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~-~-----~g~ 409 (497)
T PLN02998 343 SSLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTP-H-----SSS 409 (497)
T ss_pred CcCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccC-C-----CCc
Confidence 21 000011111110000 01122232 566 999999999999999999998899999999875 2 468
Q ss_pred cCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCccceEEEeCCC-CccceecchHHHHHHHHhcCC
Q 011145 407 LDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKN-GLVRHPKSSAYWFMRFLKGNE 485 (492)
Q Consensus 407 i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~R~pK~S~~~y~~~i~~~~ 485 (492)
++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+|||+| +++|+||+|++||+++|+++.
T Consensus 410 v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~~~ 489 (497)
T PLN02998 410 LVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKGTL 489 (497)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999997 379999999999999999885
Q ss_pred CCCC
Q 011145 486 EKNG 489 (492)
Q Consensus 486 ~~~~ 489 (492)
.+|+
T Consensus 490 ~~~~ 493 (497)
T PLN02998 490 HHPS 493 (497)
T ss_pred CCCc
Confidence 5554
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.9e-131 Score=1049.00 Aligned_cols=453 Identities=43% Similarity=0.826 Sum_probs=405.2
Q ss_pred CCCCCCCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeecc
Q 011145 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (492)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si 98 (492)
+.+.+||++|+||+|||||||||+++++|||+|+||.+++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 45568999999999999999999999999999999999872 23468899999999999999999999999999999
Q ss_pred cccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 011145 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (492)
Q Consensus 99 ~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v 178 (492)
+||||+|+|.| .+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+|
T Consensus 99 sWsRI~P~G~g-~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrV 177 (504)
T PLN02814 99 SWSRLIPNGRG-LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDV 177 (504)
T ss_pred cHhhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcC
Confidence 99999999878 89999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred cEEEEccCccccccccccccccCCCCCC----------CCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecC
Q 011145 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (492)
Q Consensus 179 ~~w~t~NEp~~~~~~gy~~G~~~pg~~~----------~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~ 248 (492)
++|+|||||++++..||..|.. ||... ++.++.++|+||+++|||+|++++|++++..|+++||++++.
T Consensus 178 k~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~ 256 (504)
T PLN02814 178 KLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFA 256 (504)
T ss_pred CEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeC
Confidence 9999999999999999999884 76421 123468999999999999999999998665689999999999
Q ss_pred ceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcCCccEEEEccCCcceeccCC
Q 011145 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHAT 328 (492)
Q Consensus 249 ~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg~~DFiGiNyY~~~~v~~~~ 328 (492)
.+++|.+++++|++||++++++.++||+||++.|+||..|++.+++++|.|+++|+++|++++||||||||++.+|+...
T Consensus 257 ~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~ 336 (504)
T PLN02814 257 FGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRP 336 (504)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred CCC---CCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCcc
Q 011145 329 KSP---EEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHE 405 (492)
Q Consensus 329 ~~~---~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~ 405 (492)
... .....+..+.+.. ..+.++.++++| +|+|+||+.+|+++++||++|||||||||++.. + ++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~-~-----~g 403 (504)
T PLN02814 337 APSIFPSMNEGFFTDMGAY------IISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMK-H-----DS 403 (504)
T ss_pred CCCcccccCCCcccccccc------cCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCC-C-----CC
Confidence 110 0000111010000 012235667889 899999999999999999998899999999975 2 56
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCccceEEEeCCC-CccceecchHHHHHHHHhcC
Q 011145 406 MLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKN-GLVRHPKSSAYWFMRFLKGN 484 (492)
Q Consensus 406 ~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~R~pK~S~~~y~~~i~~~ 484 (492)
+++|++||+||++||++|++||+|||||+|||+|||||||||.+||++|||||+|||+| +++|+||+|++||+++|+++
T Consensus 404 ~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~ 483 (504)
T PLN02814 404 TLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGT 483 (504)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999997 36999999999999999988
Q ss_pred CCCCCC
Q 011145 485 EEKNGK 490 (492)
Q Consensus 485 ~~~~~~ 490 (492)
..++++
T Consensus 484 ~~~~~~ 489 (504)
T PLN02814 484 IDVASQ 489 (504)
T ss_pred CChhcc
Confidence 776654
No 4
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.9e-131 Score=1048.79 Aligned_cols=451 Identities=44% Similarity=0.872 Sum_probs=406.5
Q ss_pred CCCCCCCCCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeee
Q 011145 17 RNVSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRF 96 (492)
Q Consensus 17 ~~~~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~ 96 (492)
..+++.+||++|+||+|||||||||++++||||+|+||.|++.+ ++.++++||||||||+|||+|||+||+++|||
T Consensus 23 ~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRf 98 (503)
T PLN02849 23 SDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYKEDVKLMVETGLDAFRF 98 (503)
T ss_pred CCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHHHHHHHHHHcCCCeEEE
Confidence 34667789999999999999999999999999999999998854 24588999999999999999999999999999
Q ss_pred cccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 011145 97 SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGD 176 (492)
Q Consensus 97 si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd 176 (492)
||+||||+|+|.| .+|++|++||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||+.|+++|||
T Consensus 99 SIsWsRI~P~G~g-~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgD 177 (503)
T PLN02849 99 SISWSRLIPNGRG-SVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGN 177 (503)
T ss_pred eccHHhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 9999999999877 899999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CccEEEEccCccccccccccccccCCCCCC---------CCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeec
Q 011145 177 RVKNWITINEPLQTAVNGYCTGIFAPGRHQ---------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVD 247 (492)
Q Consensus 177 ~v~~w~t~NEp~~~~~~gy~~G~~~pg~~~---------~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~ 247 (492)
+|++|+|||||++++..||..|.+|||... ++.++.++|+||+++|||+||+++|++++..|+++||++++
T Consensus 178 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~ 257 (503)
T PLN02849 178 HVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLF 257 (503)
T ss_pred cCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 999999999999999999999999999631 12346899999999999999999999764457899999999
Q ss_pred CceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcCCccEEEEccCCcceeccC
Q 011145 248 CEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHA 327 (492)
Q Consensus 248 ~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg~~DFiGiNyY~~~~v~~~ 327 (492)
..+++|.+++++|++||++++++.++||+||++.|+||..|++.+++++|.|+++|++++++++||||||||++.+|+..
T Consensus 258 ~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~ 337 (503)
T PLN02849 258 ALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNI 337 (503)
T ss_pred CceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCCC--CCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCcc
Q 011145 328 TKSPE--EGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHE 405 (492)
Q Consensus 328 ~~~~~--~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~ 405 (492)
..... ..+.+.. ..+.+....++.+| +|+|+||+.+|+++++||++|||||||||++.. ++ .++
T Consensus 338 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~-d~---~~~ 403 (503)
T PLN02849 338 KIKPSLSGNPDFYS---------DMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMK-QD---LQL 403 (503)
T ss_pred CCCCCCCCCCcccc---------ccCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCcc-CC---CCC
Confidence 21110 0000100 00112223456788 999999999999999999998899999999986 42 466
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCccceEEEeCCC-CccceecchHHHHHHHHhcC
Q 011145 406 MLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKN-GLVRHPKSSAYWFMRFLKGN 484 (492)
Q Consensus 406 ~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~R~pK~S~~~y~~~i~~~ 484 (492)
+++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+|||+| +++|+||+|++||+++|++|
T Consensus 404 ~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~ 483 (503)
T PLN02849 404 QQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGN 483 (503)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999999999998 36999999999999999998
Q ss_pred CC
Q 011145 485 EE 486 (492)
Q Consensus 485 ~~ 486 (492)
+.
T Consensus 484 ~~ 485 (503)
T PLN02849 484 ST 485 (503)
T ss_pred CC
Confidence 63
No 5
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=3.9e-129 Score=1029.39 Aligned_cols=451 Identities=35% Similarity=0.613 Sum_probs=395.8
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeeccccc
Q 011145 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (492)
Q Consensus 22 ~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~Ws 101 (492)
.+||++|+||+|||||||||++++||||+|+||+|++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 359999999999999999999999999999999999866653 6889999999999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCccEE
Q 011145 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNW 181 (492)
Q Consensus 102 ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w 181 (492)
||+|+|+| .+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.|+++||| |++|
T Consensus 79 RI~P~G~g-~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W 155 (469)
T PRK13511 79 RIFPDGYG-EVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYW 155 (469)
T ss_pred hcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 99999877 8999999999999999999999999999999999999976 9999999999999999999999999 9999
Q ss_pred EEccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeCC-CCHHH
Q 011145 182 ITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIED 260 (492)
Q Consensus 182 ~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~-~~~~D 260 (492)
+|||||++++..||..|.+|||... ..+..++++||+++|||+||+++|++. |+++||++++..+++|.+ ++++|
T Consensus 156 ~T~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d 231 (469)
T PRK13511 156 TTFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPED 231 (469)
T ss_pred EEccchhhhhhcchhhcccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHH
Confidence 9999999999999999999999642 234689999999999999999999974 789999999999999999 99999
Q ss_pred HHHHHHHHHHhhhcccccccccCCcHHHHHhhcc------cCCCCCHHhHHhhcC---CccEEEEccCCcceeccCCCCC
Q 011145 261 KSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD------QLPKFMQKDKELVRN---SLDFVGLNHYTSRFIAHATKSP 331 (492)
Q Consensus 261 ~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~------rlp~ft~ee~~~ikg---~~DFiGiNyY~~~~v~~~~~~~ 331 (492)
++||++++++.++||+||+++|+||..|++.++. ..|.|+++|++++++ ++||||||||++.+|+......
T Consensus 232 ~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~ 311 (469)
T PRK13511 232 VRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGET 311 (469)
T ss_pred HHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCcc
Confidence 9999999999999999999999999999987741 124799999999964 6899999999999997532110
Q ss_pred CCCCccchhhhhh---h--hhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCC-CCEEEeecCCCCCCCCCCCCcc
Q 011145 332 EEGSFYEAQEMER---L--VEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNN-PPIYVTENGMDDEENDSSPLHE 405 (492)
Q Consensus 332 ~~~~~~~~d~~~~---~--~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~-ppI~ITENG~~~~~~~~~~~~~ 405 (492)
........+.... . .......+..+.++++| +|+|+||+.+|++++++|++ |||||||||++.. ++ .+.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~-d~-~~~~~ 388 (469)
T PRK13511 312 EIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYK-DE-FVDGK 388 (469)
T ss_pred ccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCC-CC-cCCCC
Confidence 0000000000000 0 00000011224567888 89999999999999999998 6799999999976 43 34456
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCccceEEEeCCCCccceecchHHHHHHHHhcCC
Q 011145 406 MLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKNGLVRHPKSSAYWFMRFLKGNE 485 (492)
Q Consensus 406 ~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~~i~~~~ 485 (492)
+++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+|||+| ++|+||+|++||+++|++|+
T Consensus 389 ~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~-~~R~pK~S~~wy~~~i~~~~ 467 (469)
T PRK13511 389 TVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFET-QERYPKKSAYWYKKLAETKV 467 (469)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCc-CccccccHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred CC
Q 011145 486 EK 487 (492)
Q Consensus 486 ~~ 487 (492)
++
T Consensus 468 ~~ 469 (469)
T PRK13511 468 IK 469 (469)
T ss_pred CC
Confidence 74
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.9e-128 Score=1020.33 Aligned_cols=444 Identities=32% Similarity=0.583 Sum_probs=393.4
Q ss_pred CCCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeecccccc
Q 011145 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSR 102 (492)
Q Consensus 23 ~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~Wsr 102 (492)
+||++|+||+|||||||||+++++|||+|+||.+.+.+++ .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999999875554 367899999999999999999999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCccEEE
Q 011145 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWI 182 (492)
Q Consensus 103 i~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~ 182 (492)
|+|++.| .+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.||++||+ |++|+
T Consensus 79 I~P~g~~-~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 79 IFPTGYG-EVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred ccCCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 9999877 8999999999999999999999999999999999999976 9999999999999999999999998 99999
Q ss_pred EccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeCC-CCHHHH
Q 011145 183 TINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIEDK 261 (492)
Q Consensus 183 t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~-~~~~D~ 261 (492)
||||||+++..||..|.+|||.. ...++.++++||+++|||+||+++|++. ++++||++++..+++|.+ ++++|+
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~-~~~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D~ 231 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIK-YDLAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPADV 231 (467)
T ss_pred EecchhhhhhccchhcccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHHH
Confidence 99999999999999999999963 1235689999999999999999999974 789999999999999998 899999
Q ss_pred HHHHHHHHHhhhcccccccccCCcHHHHHhhccc------CCCCCHHhHHhh---cCCccEEEEccCCcceeccCCCCCC
Q 011145 262 SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ------LPKFMQKDKELV---RNSLDFVGLNHYTSRFIAHATKSPE 332 (492)
Q Consensus 262 ~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~r------lp~ft~ee~~~i---kg~~DFiGiNyY~~~~v~~~~~~~~ 332 (492)
+||++++++.++||+||+++|+||..|+..++.+ .|.|+++|+++| ++++||||||||++.+|+.......
T Consensus 232 ~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~ 311 (467)
T TIGR01233 232 RAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETE 311 (467)
T ss_pred HHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccc
Confidence 9999999999999999999999999999987632 377999999999 5899999999999999975311100
Q ss_pred ---CCC---c--cchhhhhhhhhcCCCcccc-CccCCCCcccChHHHHHHHHHHHHHcCC-CCEEEeecCCCCCCCCCCC
Q 011145 333 ---EGS---F--YEAQEMERLVEWEGGEVIG-EKAASEWLYVVPWGLRKVLNYIAKTYNN-PPIYVTENGMDDEENDSSP 402 (492)
Q Consensus 333 ---~~~---~--~~~d~~~~~~~~~~g~~~~-~~~~~~w~~i~P~Gl~~~L~~~~~rY~~-ppI~ITENG~~~~~~~~~~ 402 (492)
... . ........ ....+.+ +.++++| +|+|+||+.+|++++++|++ |||||||||++.. ++ .
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~-d~-~- 383 (467)
T TIGR01233 312 IIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYK-DE-F- 383 (467)
T ss_pred cccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCC-CC-C-
Confidence 000 0 00000000 0001111 4567888 89999999999999999997 6799999999986 43 3
Q ss_pred CccccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCccceEEEeCCCCccceecchHHHHHHHHh
Q 011145 403 LHEMLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKNGLVRHPKSSAYWFMRFLK 482 (492)
Q Consensus 403 ~~~~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~~i~ 482 (492)
.++.++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|++|||++|+
T Consensus 384 ~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t-~~R~~K~S~~wy~~ii~ 462 (467)
T TIGR01233 384 VDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDT-QERYPKKSAHWYKKLAE 462 (467)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCC-CccccccHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCC
Q 011145 483 GNEE 486 (492)
Q Consensus 483 ~~~~ 486 (492)
+|-+
T Consensus 463 ~~~~ 466 (467)
T TIGR01233 463 TQVI 466 (467)
T ss_pred hcCC
Confidence 9754
No 7
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-128 Score=989.17 Aligned_cols=448 Identities=41% Similarity=0.761 Sum_probs=402.9
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCCCccceeccc--cCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeeccc
Q 011145 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH--TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSIS 99 (492)
Q Consensus 22 ~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~--~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~ 99 (492)
.+||++|+||+||||+|+|||+++||||+|+||.|.+ .|+++..+..++.||||||||+|||+|||+||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 56777778899999999999999999999999999999999
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 011145 100 WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVK 179 (492)
Q Consensus 100 Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~ 179 (492)
||||+|++++.++|++|++||+++||+|+++||+|+|||+|||+|+||++++|||.|+++++.|++||+.||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999998544799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeCCCCHH
Q 011145 180 NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIE 259 (492)
Q Consensus 180 ~w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~~~~~ 259 (492)
+|+||||||+++.+||+.|.+||+.. +...++||+||+++|||+|++++|++. ++.+||++++..+.+|.+++|+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~--~~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p~YP~s~~p~ 236 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIV--DPKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTPAYPLSDKPE 236 (460)
T ss_pred EEEEecchhhhhcccccccccCCCcc--CHHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCcCCCCCCCHH
Confidence 99999999999999999999999975 377889999999999999999999986 3449999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCcHHHHHhhccc--CCCCCHHhHHhhcC-CccEEEEccCCc-ceeccCCCCCCCCC
Q 011145 260 DKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRN-SLDFVGLNHYTS-RFIAHATKSPEEGS 335 (492)
Q Consensus 260 D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~r--lp~ft~ee~~~ikg-~~DFiGiNyY~~-~~v~~~~~~~~~~~ 335 (492)
|+.||+.++.+.+.+|+||+++|.||..+...+++. +|.++++|+++||. ++||||||||++ .+++.......
T Consensus 237 dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~--- 313 (460)
T COG2723 237 DVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYVS--- 313 (460)
T ss_pred HHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcCC---
Confidence 999999999999999999999999999999999765 79999999999975 699999999994 44444332100
Q ss_pred ccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccccCChhHHHH
Q 011145 336 FYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEMLDDKLRVRY 415 (492)
Q Consensus 336 ~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~y 415 (492)
.+....... ..-.|..+.++.|| +|+|+||+.+|+++++||+. ||||||||++.. +. ...++ |+|++||+|
T Consensus 314 ~~~~~~~~~----~~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~~-p~fItENG~G~~-d~-~~~~~-i~DdyRI~Y 384 (460)
T COG2723 314 GYGPGGFFT----SVPNPGLEVSDWGW-EIYPKGLYDILEKLYERYGI-PLFITENGLGVK-DE-VDFDG-INDDYRIDY 384 (460)
T ss_pred ccccccccc----ccCCCCCcccCCCc-eeChHHHHHHHHHHHHHhCC-CeEEecCCCCcc-cc-cccCC-cCchHHHHH
Confidence 011000000 00123345678899 99999999999999999995 599999999987 43 33334 999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCccceEEEeCCCCccceecchHHHHHHHHhcCCC
Q 011145 416 FKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKNGLVRHPKSSAYWFMRFLKGNEE 486 (492)
Q Consensus 416 l~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~~i~~~~~ 486 (492)
|++||.+|++||+|||+|+|||+||++||+||.+||++||||++||++|.++|+||+|++|||++|++||.
T Consensus 385 l~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sng~ 455 (460)
T COG2723 385 LKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESNGI 455 (460)
T ss_pred HHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999996699999999999999999993
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.4e-127 Score=1016.73 Aligned_cols=448 Identities=31% Similarity=0.550 Sum_probs=393.7
Q ss_pred CCCCCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccc--c----------C--CCCCcccchhhchHHHHHHH
Q 011145 21 KTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII--D----------K--SNGDVAVDHYHRYKEDIDLI 86 (492)
Q Consensus 21 ~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~y~ry~eDi~l~ 86 (492)
+.+||++|+||+|||||||||++++||||+|+||+|++.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 45799999999999999999999999999999999988655441 1 1 15789999999999999999
Q ss_pred HHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHH
Q 011145 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIY 166 (492)
Q Consensus 87 ~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~y 166 (492)
|+||+++|||||+||||+|+|.+..+|++|++||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 99999999999999999999743269999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhCCCccEEEEccCcccccccccc-ccc-cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEE
Q 011145 167 ADTCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGL 244 (492)
Q Consensus 167 a~~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~G~-~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi 244 (492)
|+.|+++|||+|++|+|||||++++..||. .|. +|||. .+.++.++|+||+++|||+|+++||+.. |+++||+
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~--~~~~~~~~a~h~~llAHa~A~~~~~~~~---~~g~VGi 237 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGE--NKEQVKYQAAHHELVASAIATKIAHEVD---PENKVGC 237 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCC--chhhhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEE
Confidence 999999999999999999999999888886 454 47774 2446689999999999999999999864 7899999
Q ss_pred eecCceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcc--cCCCCCHHhHHhhc-CCccEEEEccCCc
Q 011145 245 VVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD--QLPKFMQKDKELVR-NSLDFVGLNHYTS 321 (492)
Q Consensus 245 ~~~~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~--rlp~ft~ee~~~ik-g~~DFiGiNyY~~ 321 (492)
+++..+++|.+++++|++||++++ +.+.||+||+++|+||..|+..+++ .+|.|+++|+++++ +++||||||||++
T Consensus 238 ~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~ 316 (478)
T PRK09593 238 MLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSS 316 (478)
T ss_pred EEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccC
Confidence 999999999999999999999887 5578999999999999999999975 46889999999996 9999999999999
Q ss_pred ceeccCCCCCCCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCC
Q 011145 322 RFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSS 401 (492)
Q Consensus 322 ~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~ 401 (492)
.+|+....... .. .... ... .. .|..+.++++| +|+|+||+.+|+++++||++| |||||||++.. ++ .
T Consensus 317 ~~v~~~~~~~~--~~-~~~~-~~~--~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~-d~-~ 384 (478)
T PRK09593 317 RVASGDPKVNE--KT-AGNI-FAS--LK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQKP-MFIVENGLGAV-DK-P 384 (478)
T ss_pred cccccCCCCCC--CC-CCCc-ccc--cc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcCCC-EEEEcCCCCCC-CC-C
Confidence 99975321100 00 0000 000 01 13334667889 999999999999999999986 99999999986 43 4
Q ss_pred CCccccCChhHHHHHHHHHHHHHHHHH-cCCCEEEEeccccccccccCCC-CCCccceEEEeCCC----CccceecchHH
Q 011145 402 PLHEMLDDKLRVRYFKGYLSAVAQAIK-DGADVRGYFVWSLLDNFEWAQG-YTKRFGLVYVDYKN----GLVRHPKSSAY 475 (492)
Q Consensus 402 ~~~~~i~D~~Ri~yl~~~l~~~~~Ai~-dGv~v~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~~~R~pK~S~~ 475 (492)
+.+++++|++||+||++||++|++||+ |||||+|||+|||+|||||.+| |++|||||+|||+| +++|+||+|++
T Consensus 385 ~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~ 464 (478)
T PRK09593 385 DENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFD 464 (478)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHH
Confidence 567889999999999999999999996 9999999999999999999999 99999999999996 37999999999
Q ss_pred HHHHHHhcCCC
Q 011145 476 WFMRFLKGNEE 486 (492)
Q Consensus 476 ~y~~~i~~~~~ 486 (492)
||+++|++|+.
T Consensus 465 wy~~ii~~~~~ 475 (478)
T PRK09593 465 WYKKVIASNGE 475 (478)
T ss_pred HHHHHHHhCCc
Confidence 99999998875
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.8e-127 Score=1012.30 Aligned_cols=446 Identities=31% Similarity=0.578 Sum_probs=389.3
Q ss_pred CCCCCCeeeeecccccccCCcCCCCCCCccceecc---c-cCCccc----cCC--CCCcccchhhchHHHHHHHHHcCCC
Q 011145 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DKS--NGDVAVDHYHRYKEDIDLIAKLGFD 92 (492)
Q Consensus 23 ~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~y~ry~eDi~l~~~lG~~ 92 (492)
+||++|+||+|||||||||++++||||+|+||.|+ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 4 345443 222 5789999999999999999999999
Q ss_pred eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 011145 93 AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFA 172 (492)
Q Consensus 93 ~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 172 (492)
+|||||+||||+|+|.+..+|++|++||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||++||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999753268999999999999999999999999999999999999989999999999999999999999
Q ss_pred HhCCCccEEEEccCccccccc-----ccc-ccc-cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEe
Q 011145 173 SFGDRVKNWITINEPLQTAVN-----GYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (492)
Q Consensus 173 ~~gd~v~~w~t~NEp~~~~~~-----gy~-~G~-~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~ 245 (492)
+|||+|++|+||||||+++.. ||. .|. +|||.. ..+..++|+||+++|||+|++++|++. ++++||++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~--~~~~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~ 237 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED--REQIMYQAAHYELVASALAVKTGHEIN---PDFQIGCM 237 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEE
Confidence 999999999999999998766 444 444 377642 235579999999999999999999975 68899999
Q ss_pred ecCceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhccc--CCCCCHHhHHhh-cCCccEEEEccCCcc
Q 011145 246 VDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELV-RNSLDFVGLNHYTSR 322 (492)
Q Consensus 246 ~~~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~r--lp~ft~ee~~~i-kg~~DFiGiNyY~~~ 322 (492)
++..+++|.+++++|++||++++.+ +.||+||+++|+||..|+..++++ .|.|+++|++++ ++++||||||||++.
T Consensus 238 ~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~ 316 (476)
T PRK09589 238 IAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSF 316 (476)
T ss_pred EeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCc
Confidence 9999999999999999999998854 679999999999999999999864 478999999988 689999999999999
Q ss_pred eeccCCCCCCCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCC
Q 011145 323 FIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSP 402 (492)
Q Consensus 323 ~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~ 402 (492)
+|+.....+. ..+..+. .. .. .|..+.++++| +|+|+||+.+|++++++|++| |||||||++.. ++ .+
T Consensus 317 ~v~~~~~~~~--~~~~~~~--~~--~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~P-i~ItENG~~~~-d~-~~ 384 (476)
T PRK09589 317 ATKFHEDNPQ--LDYVETR--DL--VS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQLP-LFIVENGFGAI-DQ-RE 384 (476)
T ss_pred ccccCCCCCC--CCccccc--cc--cc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCCC-EEEEeCCcccC-CC-CC
Confidence 9875321100 0000000 00 01 12334567888 999999999999999999987 99999999986 43 45
Q ss_pred CccccCChhHHHHHHHHHHHHHHHH-HcCCCEEEEeccccccccccCCC-CCCccceEEEeCCC----CccceecchHHH
Q 011145 403 LHEMLDDKLRVRYFKGYLSAVAQAI-KDGADVRGYFVWSLLDNFEWAQG-YTKRFGLVYVDYKN----GLVRHPKSSAYW 476 (492)
Q Consensus 403 ~~~~i~D~~Ri~yl~~~l~~~~~Ai-~dGv~v~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~~~R~pK~S~~~ 476 (492)
.+++|+|++||+||++||++|++|| +|||||+|||+|||+|||||.+| |++|||||+|||+| +++|+||+|++|
T Consensus 385 ~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~w 464 (476)
T PRK09589 385 ADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYW 464 (476)
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHH
Confidence 6788999999999999999999999 79999999999999999999999 99999999999996 269999999999
Q ss_pred HHHHHhcCCC
Q 011145 477 FMRFLKGNEE 486 (492)
Q Consensus 477 y~~~i~~~~~ 486 (492)
|+++|++|+.
T Consensus 465 y~~~i~~ng~ 474 (476)
T PRK09589 465 YRDVIANNGE 474 (476)
T ss_pred HHHHHHhcCC
Confidence 9999998875
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.1e-128 Score=1026.62 Aligned_cols=447 Identities=52% Similarity=0.951 Sum_probs=390.2
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeeccccc
Q 011145 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (492)
Q Consensus 22 ~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~Ws 101 (492)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 47999999999999999999999999999999999998888888889999999999999999999999999999999999
Q ss_pred ccccCC-CCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCccE
Q 011145 102 RIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKN 180 (492)
Q Consensus 102 ri~P~~-~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~ 180 (492)
||+|+| .| .+|++|+++|+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++
T Consensus 83 Ri~P~g~~g-~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 83 RIFPDGFEG-KVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHSTTSSSS-SS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred heeeccccc-ccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 999997 68 999999999999999999999999999999999999997 699999999999999999999999999999
Q ss_pred EEEccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeCCCCHHH
Q 011145 181 WITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIED 260 (492)
Q Consensus 181 w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~~~~~D 260 (492)
|+|||||++++..||..|.+|||. .+.++.++++||+++|||+|++++|++. ++++||++++..+++|.+++++|
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~--~~~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d 235 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGR--DSLKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPED 235 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCS--STHHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHH
T ss_pred EEeccccceeeccccccccccccc--cccchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchh
Confidence 999999999999999999999995 4678899999999999999999999987 79999999999999999988877
Q ss_pred H-HHHHHHHHHhhhcccccccccCCcHHHHHhhccc--CCCCCHHhHHhhcCCccEEEEccCCcceeccCCCCCCCCCcc
Q 011145 261 K-SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSPEEGSFY 337 (492)
Q Consensus 261 ~-~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~r--lp~ft~ee~~~ikg~~DFiGiNyY~~~~v~~~~~~~~~~~~~ 337 (492)
. +||++.+++.++||+||+++|+||..|+.+++++ +|.||++|++.|++++||||||||++..|+........ ...
T Consensus 236 ~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~-~~~ 314 (455)
T PF00232_consen 236 DVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSP-PSY 314 (455)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSS-TTH
T ss_pred hHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcccccc-ccc
Confidence 6 8999999999999999999999999999999988 99999999999999999999999999999987643211 111
Q ss_pred chhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccccCChhHHHHHH
Q 011145 338 EAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEMLDDKLRVRYFK 417 (492)
Q Consensus 338 ~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~ 417 (492)
........ .. .+.++.++++| +++|+||+.+|++++++|++|||||||||+++. ++ .+ +++++|+.|++||+
T Consensus 315 ~~~~~~~~--~~--~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~-~~-~~-~~~v~D~~Ri~yl~ 386 (455)
T PF00232_consen 315 DSDAPFGQ--PY--NPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDP-DE-VD-DGKVDDDYRIDYLQ 386 (455)
T ss_dssp EEEESEEE--EC--ETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EE-TT-CT-TSHBSHHHHHHHHH
T ss_pred cCCccccc--cc--cccccccccCc-ccccchHhhhhhhhccccCCCcEEEeccccccc-cc-cc-ccCcCcHHHHHHHH
Confidence 10000000 00 22345678899 899999999999999999988899999999987 43 22 38999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCccceEEEe-CCCCccceecchHHHHHHHHhcCC
Q 011145 418 GYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVD-YKNGLVRHPKSSAYWFMRFLKGNE 485 (492)
Q Consensus 418 ~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD-~~~~~~R~pK~S~~~y~~~i~~~~ 485 (492)
+||++|++||+|||||+|||+|||||||||.+||++|||||+|| ++| ++|+||+|++||+++|++||
T Consensus 387 ~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~-~~R~pK~S~~~y~~~i~~ng 454 (455)
T PF00232_consen 387 DHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDT-LKRTPKKSAYWYKDFIRSNG 454 (455)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTT-TEEEEBHHHHHHHHHHHHTE
T ss_pred HHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCC-cCeeeccHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999 555 99999999999999999997
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.7e-126 Score=1007.28 Aligned_cols=449 Identities=30% Similarity=0.562 Sum_probs=391.1
Q ss_pred CCCCCCCCCeeeeecccccccCCcCCCCCCCccceecc---c-cCCccc----cC--CCCCcccchhhchHHHHHHHHHc
Q 011145 20 SKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DK--SNGDVAVDHYHRYKEDIDLIAKL 89 (492)
Q Consensus 20 ~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~---~-~~~~~~----~~--~~~~~a~d~y~ry~eDi~l~~~l 89 (492)
++.+||++|+||+|||||||||++++||||+|+||+|+ + .++++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 4 344442 22 26789999999999999999999
Q ss_pred CCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHH
Q 011145 90 GFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT 169 (492)
Q Consensus 90 G~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~ 169 (492)
|+++|||||+||||+|+|.+..+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 99999999999999999753269999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHhCCCccEEEEccCcccc-----ccccccc-ccc-CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeE
Q 011145 170 CFASFGDRVKNWITINEPLQT-----AVNGYCT-GIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNI 242 (492)
Q Consensus 170 ~~~~~gd~v~~w~t~NEp~~~-----~~~gy~~-G~~-~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~v 242 (492)
||++|||+|++|+||||||++ +..||.. |.+ ||+. ...++.++|+||+++|||+|++++|+.. ++++|
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~--~~~~~~~~~~h~~llAHa~A~~~~~~~~---~~~~I 236 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHE--NPEETMYQVLHHQFVASALAVKAARRIN---PEMKV 236 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeE
Confidence 999999999999999999987 6678874 665 5543 2335689999999999999999999975 68999
Q ss_pred EEeecCceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccC--CCCCHHhHHhh-cCCccEEEEccC
Q 011145 243 GLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQL--PKFMQKDKELV-RNSLDFVGLNHY 319 (492)
Q Consensus 243 Gi~~~~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rl--p~ft~ee~~~i-kg~~DFiGiNyY 319 (492)
|+++++.+++|.+++++|++||++++. ...+|+||+++|+||..|++.++++. |.++++|++++ ++++||||||||
T Consensus 237 Gi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyY 315 (477)
T PRK15014 237 GCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYY 315 (477)
T ss_pred EEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcce
Confidence 999999999999999999999998773 22359999999999999999998764 78999999988 589999999999
Q ss_pred CcceeccCCCCCCCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCC
Q 011145 320 TSRFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEEND 399 (492)
Q Consensus 320 ~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~ 399 (492)
++.+|+...........+. .. .. .+..+.++++| +|+|+||+.+|+++++||++| |||||||++.. ++
T Consensus 316 t~~~v~~~~~~~~~~~~~~-----~~--~~--~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~-d~ 383 (477)
T PRK15014 316 MTNAVKAEGGTGDAISGFE-----GS--VP--NPYVKASDWGW-QIDPVGLRYALCELYERYQKP-LFIVENGFGAY-DK 383 (477)
T ss_pred eCeeeccCCCCCCCccccc-----cc--cC--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCCC-EEEeCCCCCCC-CC
Confidence 9999975321100000000 00 01 12224566888 899999999999999999987 99999999986 43
Q ss_pred CCCCccccCChhHHHHHHHHHHHHHHHHH-cCCCEEEEeccccccccccCCC-CCCccceEEEeCCC----Cccceecch
Q 011145 400 SSPLHEMLDDKLRVRYFKGYLSAVAQAIK-DGADVRGYFVWSLLDNFEWAQG-YTKRFGLVYVDYKN----GLVRHPKSS 473 (492)
Q Consensus 400 ~~~~~~~i~D~~Ri~yl~~~l~~~~~Ai~-dGv~v~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~~~R~pK~S 473 (492)
.+.+++|+|++||+||++||++|++||+ |||||+|||+|||||||||.+| |++|||||+|||+| +++|+||+|
T Consensus 384 -~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S 462 (477)
T PRK15014 384 -VEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKS 462 (477)
T ss_pred -cCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccH
Confidence 4567889999999999999999999996 9999999999999999999999 99999999999997 279999999
Q ss_pred HHHHHHHHhcCCCC
Q 011145 474 AYWFMRFLKGNEEK 487 (492)
Q Consensus 474 ~~~y~~~i~~~~~~ 487 (492)
++||+++|++|+..
T Consensus 463 ~~wy~~ii~~ng~~ 476 (477)
T PRK15014 463 FNWYKEVIASNGEK 476 (477)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999998753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=6.4e-126 Score=1001.16 Aligned_cols=446 Identities=32% Similarity=0.585 Sum_probs=395.5
Q ss_pred CCCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccc------------cCC--CCCcccchhhchHHHHHHHHH
Q 011145 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII------------DKS--NGDVAVDHYHRYKEDIDLIAK 88 (492)
Q Consensus 23 ~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~------------~~~--~~~~a~d~y~ry~eDi~l~~~ 88 (492)
+||++|+||+|||||||||++++||||+|+||.+++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999998666542 122 578999999999999999999
Q ss_pred cCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHH
Q 011145 89 LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (492)
Q Consensus 89 lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 168 (492)
||+++|||||+||||+|++.+..+|++|+++|+++|++|+++||+|||||+|||+|+||++++|||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975326899999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHhCCCccEEEEccCcccccccccc-ccc-cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEee
Q 011145 169 TCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (492)
Q Consensus 169 ~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~G~-~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~ 246 (492)
.|+++|||+|++|+||||||+++..||. .|. +|||.. ..+..++|+||+++|||+|++++|++. ++++||+++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~--~~~~~~~~~hn~llAHa~A~~~~~~~~---~~~~IGi~~ 237 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGEN--QDQVKYQAAHHELVASALATKIAHEVN---PQNQVGCML 237 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCC--chHhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEE
Confidence 9999999999999999999999999996 564 588752 345679999999999999999999975 689999999
Q ss_pred cCceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhccc--CCCCCHHhHHhhcCCccEEEEccCCccee
Q 011145 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRNSLDFVGLNHYTSRFI 324 (492)
Q Consensus 247 ~~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~r--lp~ft~ee~~~ikg~~DFiGiNyY~~~~v 324 (492)
+..+++|.+++++|++||++++ +.+.||+||+++|+||..|++.++++ +|.|+++|+++|++++||||||||++.+|
T Consensus 238 ~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v 316 (474)
T PRK09852 238 AGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCA 316 (474)
T ss_pred eCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeec
Confidence 9999999999999999998877 55789999999999999999999864 79999999999999999999999999999
Q ss_pred ccCCCCCCCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCc
Q 011145 325 AHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLH 404 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~ 404 (492)
+....... .. . ...... .. .|..+.++++| +|+|+||+.+|+++++||++| |||||||++.. ++ .+.+
T Consensus 317 ~~~~~~~~--~~-~-~~~~~~--~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~-d~-~~~~ 384 (474)
T PRK09852 317 SAEMNANN--SS-A-ANVVKS--LR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQKP-LFLVENGLGAK-DE-IAAN 384 (474)
T ss_pred ccCCCCCC--CC-c-CCceec--cc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcCCC-EEEeCCCCCCC-CC-cCCC
Confidence 75321100 00 0 000000 01 13335667889 999999999999999999987 99999999976 43 4567
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccccCCC-CCCccceEEEeCCC----CccceecchHHHHHH
Q 011145 405 EMLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQG-YTKRFGLVYVDYKN----GLVRHPKSSAYWFMR 479 (492)
Q Consensus 405 ~~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~~~R~pK~S~~~y~~ 479 (492)
++|+|.+||+||++||++|++||+|||||+|||+|||||||||.+| |++|||||+|||+| +++|+||+|++||++
T Consensus 385 g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ 464 (474)
T PRK09852 385 GEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKK 464 (474)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHH
Confidence 8899999999999999999999999999999999999999999999 99999999999996 379999999999999
Q ss_pred HHhcCCC
Q 011145 480 FLKGNEE 486 (492)
Q Consensus 480 ~i~~~~~ 486 (492)
+|++|+.
T Consensus 465 ii~~ng~ 471 (474)
T PRK09852 465 VIASNGE 471 (474)
T ss_pred HHHhCCc
Confidence 9999885
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=1.7e-122 Score=968.84 Aligned_cols=427 Identities=47% Similarity=0.861 Sum_probs=392.6
Q ss_pred CCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeeccccccc
Q 011145 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRI 103 (492)
Q Consensus 24 fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri 103 (492)
||++|+||+|||||||||+++++|||+|+||.+.+.++++.++.++++||||||||+|||++|++||+++|||||+||||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998777776667889999999999999999999999999999999999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCccEEEE
Q 011145 104 FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWIT 183 (492)
Q Consensus 104 ~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t 183 (492)
+|+|.| .+|++++++|+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.|+++||++|++|+|
T Consensus 81 ~p~g~~-~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGTG-PVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCCC-CcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 999767 8999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred ccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeCCCCHHHHHH
Q 011145 184 INEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSA 263 (492)
Q Consensus 184 ~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~~~~~D~~A 263 (492)
|||||+++..||..|.+||+.. +....++++||+++|||+|++++|++. |+++||++++..+++|.+++++|+.|
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~--~~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~a 233 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLR--DLRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAA 233 (427)
T ss_pred ecCcceecccchhhccCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHH
Confidence 9999999999999999999853 235578999999999999999999975 68999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcCCccEEEEccCCcceeccCCCCCCCCCccchhhhh
Q 011145 264 AARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSPEEGSFYEAQEME 343 (492)
Q Consensus 264 a~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~ 343 (492)
|++++++.++||+||++.|+||..|++.++ .+|.||++|++++++++||||||||++.+|+...... ... . .
T Consensus 234 a~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~~~---~-~ 305 (427)
T TIGR03356 234 ARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---AGF---V-E 305 (427)
T ss_pred HHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---CCc---c-c
Confidence 999999999999999999999999999997 4799999999999999999999999999997632110 000 0 0
Q ss_pred hhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccccCChhHHHHHHHHHHHH
Q 011145 344 RLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEMLDDKLRVRYFKGYLSAV 423 (492)
Q Consensus 344 ~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~~l~~~ 423 (492)
..+..+.++++| +|+|+||+.+|+++++||++|||||||||++.. +. .+ +++++|++||+||++||++|
T Consensus 306 -------~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~-d~-~~-~g~~~D~~Ri~yl~~hl~~~ 374 (427)
T TIGR03356 306 -------VPEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFD-DE-VT-DGEVHDPERIAYLRDHLAAL 374 (427)
T ss_pred -------cCCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcC-CC-Cc-CCCcCCHHHHHHHHHHHHHH
Confidence 011224566889 999999999999999999998899999999986 43 34 77899999999999999999
Q ss_pred HHHHHcCCCEEEEeccccccccccCCCCCCccceEEEeCCCCccceecchHHHH
Q 011145 424 AQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKNGLVRHPKSSAYWF 477 (492)
Q Consensus 424 ~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y 477 (492)
++||+|||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|++||
T Consensus 375 ~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~-~~R~~K~S~~wy 427 (427)
T TIGR03356 375 ARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYET-QKRTPKDSAKWY 427 (427)
T ss_pred HHHHHCCCCEEEEEecccccccchhcccccccceEEECCCC-CcccccceeeeC
Confidence 99999999999999999999999999999999999999999 999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.67 E-value=1.1e-14 Score=143.60 Aligned_cols=250 Identities=16% Similarity=0.239 Sum_probs=162.0
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcc--eEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 011145 98 ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP--YVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 98 i~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g 175 (492)
+.|++++|++ | .+| ++..+++++.|+++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~-G-~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR-G-QFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC-C-ccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhC
Confidence 3699999998 8 999 677789999999999994 5567788999999742 2 56888999999999999999
Q ss_pred CCccEEEEccCccccccccccccccCCCCCCCCCChHHHHH-HHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeC
Q 011145 176 DRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVA-HHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEAN 254 (492)
Q Consensus 176 d~v~~w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~-~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~ 254 (492)
++|..|.++|||......|+....|. .++ ...+ ..|.++.|+.. |+.++-+ |-....
T Consensus 72 g~i~~wdV~NE~~~~~~~~~~~~~w~------------~~~G~~~i---~~af~~ar~~~---P~a~l~~--Ndy~~~-- 129 (254)
T smart00633 72 GKIYAWDVVNEALHDNGSGLRRSVWY------------QILGEDYI---EKAFRYAREAD---PDAKLFY--NDYNTE-- 129 (254)
T ss_pred CcceEEEEeeecccCCCcccccchHH------------HhcChHHH---HHHHHHHHHhC---CCCEEEE--eccCCc--
Confidence 99999999999985321111111111 111 1111 24667777764 5666633 311000
Q ss_pred CCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcCCccEEEEccCCcceeccCCCCCCCC
Q 011145 255 SDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSPEEG 334 (492)
Q Consensus 255 ~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg~~DFiGiNyY~~~~v~~~~~~~~~~ 334 (492)
+. .... ....++. + ++..-..++|-||++.... ..
T Consensus 130 ~~-~~k~---~~~~~~v------------------~------------~l~~~g~~iDgiGlQ~H~~---~~-------- 164 (254)
T smart00633 130 EP-NAKR---QAIYELV------------------K------------KLKAKGVPIDGIGLQSHLS---LG-------- 164 (254)
T ss_pred Cc-cHHH---HHHHHHH------------------H------------HHHHCCCccceeeeeeeec---CC--------
Confidence 00 0111 1111111 0 0111123589999963210 00
Q ss_pred CccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccccCChhHHH
Q 011145 335 SFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEMLDDKLRVR 414 (492)
Q Consensus 335 ~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~ 414 (492)
...|..|..+|+.+.+. +.| |+|||.++... +. ...+.+
T Consensus 165 -----------------------------~~~~~~~~~~l~~~~~~-g~p-i~iTE~dv~~~-~~---------~~~qA~ 203 (254)
T smart00633 165 -----------------------------SPNIAEIRAALDRFASL-GLE-IQITELDISGY-PN---------PQAQAA 203 (254)
T ss_pred -----------------------------CCCHHHHHHHHHHHHHc-CCc-eEEEEeecCCC-Cc---------HHHHHH
Confidence 01244688999998765 776 99999999875 21 256677
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCccceEEEeCCCCccceecchHHH
Q 011145 415 YFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFGLVYVDYKNGLVRHPKSSAYW 476 (492)
Q Consensus 415 yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~ 476 (492)
++++.+..+.+. . .|.|.+.|.+.|..+|..+ .+.||+. ..-+|||++.+
T Consensus 204 ~~~~~l~~~~~~---p-~v~gi~~Wg~~d~~~W~~~--~~~~L~d------~~~~~kpa~~~ 253 (254)
T smart00633 204 DYEEVFKACLAH---P-AVTGVTVWGVTDKYSWLDG--GAPLLFD------ANYQPKPAYWA 253 (254)
T ss_pred HHHHHHHHHHcC---C-CeeEEEEeCCccCCcccCC--CCceeEC------CCCCCChhhhc
Confidence 777777665542 2 7899999999999999875 5678873 33467888764
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.46 E-value=7.6e-12 Score=124.10 Aligned_cols=109 Identities=22% Similarity=0.333 Sum_probs=91.6
Q ss_pred chHHHHHHHHHcCCCeeeecccccccc-cCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCC-
Q 011145 78 RYKEDIDLIAKLGFDAYRFSISWSRIF-PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL- 155 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~Wsri~-P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~- 155 (492)
-.++|++.|+++|+|++|+.|.|..++ |...+ .++...+++++++|+.|.++||.+||+||+. |.|.... +++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~-~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY-NYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT-SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc-cccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 579999999999999999999998888 55534 6999999999999999999999999999975 7775433 3333
Q ss_pred CHHHHHHHHHHHHHHHHHhCC--CccEEEEccCcccc
Q 011145 156 NKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQT 190 (492)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~~ 190 (492)
.....+.|.++++.++++|++ .|..|.++|||+..
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 356788899999999999954 78899999999854
No 16
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.30 E-value=8e-10 Score=112.10 Aligned_cols=265 Identities=17% Similarity=0.280 Sum_probs=149.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEecc---CCcchhhhhhcCCCCC
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH---WDLPLHLHESMGGWLN 156 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~~gg~~~ 156 (492)
++=+++||+.|+|++|+-+ | +.|...| .-| ++.-.++..+++++||+.++++|- |.=|.--. ..-+|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g-~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~-~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGG-YND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN-KPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTT-TTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccc-cCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-CCccCCC
Confidence 4567999999999999988 5 5565435 555 778899999999999999999984 33333211 2367988
Q ss_pred ---HHHHHHHHHHHHHHHHHhCC---CccEEEEccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 011145 157 ---KEIVKYFEIYADTCFASFGD---RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVY 230 (492)
Q Consensus 157 ---~~~~~~f~~ya~~~~~~~gd---~v~~w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~ 230 (492)
.+..+.-.+|.+.+.+.+++ .++.+++=||.+.- . .||.|.. .-+.-.-.++.| +++++
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~G----m---lwp~g~~-----~~~~~~a~ll~a---g~~AV 163 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNG----M---LWPDGKP-----SNWDNLAKLLNA---GIKAV 163 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGE----S---TBTTTCT-----T-HHHHHHHHHH---HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccc----c---cCcCCCc-----cCHHHHHHHHHH---HHHHH
Confidence 67778888899888888764 68999999998832 1 1555542 123444456665 45555
Q ss_pred HHhhccCCCCeEEEeecCceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcCC
Q 011145 231 QRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNS 310 (492)
Q Consensus 231 ~~~~~~~~~g~vGi~~~~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg~ 310 (492)
|+.. ++.+|.+.+.. | .|.... .||.+-+. .....
T Consensus 164 r~~~---p~~kV~lH~~~----~-----~~~~~~--------~~~f~~l~-------------------------~~g~d 198 (332)
T PF07745_consen 164 REVD---PNIKVMLHLAN----G-----GDNDLY--------RWFFDNLK-------------------------AAGVD 198 (332)
T ss_dssp HTHS---STSEEEEEES-----T-----TSHHHH--------HHHHHHHH-------------------------HTTGG
T ss_pred HhcC---CCCcEEEEECC----C-----CchHHH--------HHHHHHHH-------------------------hcCCC
Confidence 6553 67777554431 1 121111 12222111 11235
Q ss_pred ccEEEEccCCcceeccCCCCCCCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEee
Q 011145 311 LDFVGLNHYTSRFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTE 390 (492)
Q Consensus 311 ~DFiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITE 390 (492)
.|.||++||.- | .-....|...|+.+.+||++| |+|+|
T Consensus 199 ~DviGlSyYP~----------------------------------------w-~~~l~~l~~~l~~l~~ry~K~-V~V~E 236 (332)
T PF07745_consen 199 FDVIGLSYYPF----------------------------------------W-HGTLEDLKNNLNDLASRYGKP-VMVVE 236 (332)
T ss_dssp -SEEEEEE-ST----------------------------------------T-ST-HHHHHHHHHHHHHHHT-E-EEEEE
T ss_pred cceEEEecCCC----------------------------------------C-cchHHHHHHHHHHHHHHhCCe-eEEEe
Confidence 69999999941 1 113347899999999999986 99999
Q ss_pred cCCCCCCCCCCCCcccc-----------CChhHHHHHHHHHHHHHHHHHc--CCCEEEEecccccccc-----ccCCCCC
Q 011145 391 NGMDDEENDSSPLHEML-----------DDKLRVRYFKGYLSAVAQAIKD--GADVRGYFVWSLLDNF-----EWAQGYT 452 (492)
Q Consensus 391 NG~~~~~~~~~~~~~~i-----------~D~~Ri~yl~~~l~~~~~Ai~d--Gv~v~GY~~WSl~Dn~-----EW~~Gy~ 452 (492)
.|++...++.......+ .-.-...|| ..+.+++.+ |-...|.|+|-..-.- +|..|.+
T Consensus 237 t~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l----~~l~~~v~~~p~~~g~GvfYWeP~w~~~~~~~~~~~g~~ 312 (332)
T PF07745_consen 237 TGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFL----RDLINAVKNVPNGGGLGVFYWEPAWIPVENGWDWGGGSS 312 (332)
T ss_dssp E---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHH----HHHHHHHHTS--TTEEEEEEE-TT-GGGTTHHHHTTTSS
T ss_pred ccccccccccccccccCccccccCCCCCCHHHHHHHH----HHHHHHHHHhccCCeEEEEeeccccccCCcccccCCCCC
Confidence 99875411100000000 112234444 555556654 6899999999654332 3445544
Q ss_pred C-ccceE
Q 011145 453 K-RFGLV 458 (492)
Q Consensus 453 ~-rfGL~ 458 (492)
. .-+|+
T Consensus 313 w~n~~lF 319 (332)
T PF07745_consen 313 WDNQALF 319 (332)
T ss_dssp SSBGSSB
T ss_pred ccccccC
Confidence 3 22555
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.27 E-value=1.1e-11 Score=129.02 Aligned_cols=109 Identities=23% Similarity=0.439 Sum_probs=89.6
Q ss_pred hchHHHHHHHHHcCCCeeee-cccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhc----
Q 011145 77 HRYKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---- 151 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~-si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~---- 151 (492)
..+++|+++|+++|+|++|+ .++|++|||++ | ++| +..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G-~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-G-QYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-T-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-C-eee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 46899999999999999997 58999999999 8 999 77889999999999999999999999999998541
Q ss_pred -----------CC-----CCCHHHHHHHHHHHHHHHHHhCC--CccEEEEccCcccc
Q 011145 152 -----------GG-----WLNKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQT 190 (492)
Q Consensus 152 -----------gg-----~~~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~~ 190 (492)
|+ ..+|...+.+.++++.++++|++ .|-.|.+.|||...
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 22 34578899999999999999997 58899999999753
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.14 E-value=1.2e-08 Score=103.93 Aligned_cols=304 Identities=20% Similarity=0.267 Sum_probs=179.2
Q ss_pred CCCCCeeeeecccccccCCcCCCCCCCccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeeccccccc
Q 011145 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRI 103 (492)
Q Consensus 24 fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri 103 (492)
...+|.+|+|.++.++++.. +|++-+ .+.-+.=+..-.+-|..+
T Consensus 6 ~~~~f~~G~av~~~~~~~~~----------------------------------~~~~~~--~~~Fn~~t~eN~~Kw~~~ 49 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP----------------------------------RYRELF--AKHFNSVTPENEMKWGSI 49 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH----------------------------------HHHHHH--HHH-SEEEESSTTSHHHH
T ss_pred HhccCCEEEEechhHcCCcH----------------------------------HHHHHH--HHhCCeeeeccccchhhh
Confidence 45788999999999888831 011111 112222223335789999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE--EeccCCcchhhhhhcCCCCCHH---HHHHHHHHHHHHHHHhCC--
Q 011145 104 FPDGLGTKINMEGITFYNNIIDALLQKGIQPYV--TLYHWDLPLHLHESMGGWLNKE---IVKYFEIYADTCFASFGD-- 176 (492)
Q Consensus 104 ~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~~gd-- 176 (492)
+|.. | .+| ++..+++++.++++||++-. -+.|--.|.|+... ..+...+ ......+|.+.+++||++
T Consensus 50 e~~~-g-~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g 123 (320)
T PF00331_consen 50 EPEP-G-RFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKG 123 (320)
T ss_dssp ESBT-T-BEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCC-C-ccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcccc
Confidence 9998 8 899 66779999999999999873 44577899999753 1234333 788999999999999994
Q ss_pred CccEEEEccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeCCC
Q 011145 177 RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSD 256 (492)
Q Consensus 177 ~v~~w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~~ 256 (492)
+|..|=++|||-.-.. .+-+. .....++++-. ---..|.+..|+.. |+.+.=+.-... .
T Consensus 124 ~i~~WDVvNE~i~~~~-------~~~~~---r~~~~~~~lG~--~yi~~aF~~A~~~~---P~a~L~~NDy~~-~----- 182 (320)
T PF00331_consen 124 RIYAWDVVNEAIDDDG-------NPGGL---RDSPWYDALGP--DYIADAFRAAREAD---PNAKLFYNDYNI-E----- 182 (320)
T ss_dssp TESEEEEEES-B-TTS-------SSSSB---CTSHHHHHHTT--CHHHHHHHHHHHHH---TTSEEEEEESST-T-----
T ss_pred ceEEEEEeeecccCCC-------ccccc---cCChhhhcccH--hHHHHHHHHHHHhC---CCcEEEeccccc-c-----
Confidence 9999999999863221 11111 11112222210 01134666666665 566654322111 1
Q ss_pred CHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcC-CccEEEEccCCcceeccCCCCCCCCC
Q 011145 257 KIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRN-SLDFVGLNHYTSRFIAHATKSPEEGS 335 (492)
Q Consensus 257 ~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg-~~DFiGiNyY~~~~v~~~~~~~~~~~ 335 (492)
.+ +++ ..+. .|...+ .. +| ++|=||++-.-..
T Consensus 183 ~~-----~k~-~~~~---------------~lv~~l------------~~-~gvpIdgIG~Q~H~~~------------- 215 (320)
T PF00331_consen 183 SP-----AKR-DAYL---------------NLVKDL------------KA-RGVPIDGIGLQSHFDA------------- 215 (320)
T ss_dssp ST-----HHH-HHHH---------------HHHHHH------------HH-TTHCS-EEEEEEEEET-------------
T ss_pred ch-----HHH-HHHH---------------HHHHHH------------Hh-CCCccceechhhccCC-------------
Confidence 11 111 0010 011111 11 22 5899998754210
Q ss_pred ccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccccCChhHHHH
Q 011145 336 FYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEMLDDKLRVRY 415 (492)
Q Consensus 336 ~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~y 415 (492)
+. . |..|...|+++.+ .+.| |.|||.-+... +. ..+ .-.+..+.++
T Consensus 216 -------------------------~~-~--~~~i~~~l~~~~~-~Gl~-i~ITElDv~~~-~~--~~~-~~~~~~qA~~ 261 (320)
T PF00331_consen 216 -------------------------GY-P--PEQIWNALDRFAS-LGLP-IHITELDVRDD-DN--PPD-AEEEEAQAEY 261 (320)
T ss_dssp -------------------------TS-S--HHHHHHHHHHHHT-TTSE-EEEEEEEEESS-ST--TSC-HHHHHHHHHH
T ss_pred -------------------------CC-C--HHHHHHHHHHHHH-cCCc-eEEEeeeecCC-CC--Ccc-hHHHHHHHHH
Confidence 00 1 6789999999854 5766 99999998875 21 000 1124566777
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCCCcc-ceEEEeCCCCccceecchHHHHHH
Q 011145 416 FKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRF-GLVYVDYKNGLVRHPKSSAYWFMR 479 (492)
Q Consensus 416 l~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rf-GL~~VD~~~~~~R~pK~S~~~y~~ 479 (492)
+++.+..+.+.-.. .|.|.+.|.+.|+.+|.....+.. +|+. ..-+|||+++.+.+
T Consensus 262 ~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd------~~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 262 YRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFD------EDYQPKPAYDAIVD 318 (320)
T ss_dssp HHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB-------TTSBB-HHHHHHHH
T ss_pred HHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeEC------CCcCCCHHHHHHHh
Confidence 77777665554222 899999999999999987633333 5552 34578999887765
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.10 E-value=1.7e-09 Score=116.43 Aligned_cols=293 Identities=21% Similarity=0.299 Sum_probs=139.7
Q ss_pred chHHHHHHHH-HcCCCeeeec--c--ccccccc-CCCCC-CCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhh
Q 011145 78 RYKEDIDLIA-KLGFDAYRFS--I--SWSRIFP-DGLGT-KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (492)
Q Consensus 78 ry~eDi~l~~-~lG~~~~R~s--i--~Wsri~P-~~~g~-~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 150 (492)
.+++.+..++ ++|++.+||- + +..-... ++.|. .+| +...|+++|.|+++||+|+|.|.. +|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 3667777765 9999999985 3 2222222 23231 278 788899999999999999999984 77776421
Q ss_pred ------cCCCC-CHHHHHHHHHHHHHHH----HHhCC-Ccc--EEEEccCccccccccccccccCCCCCCCCCChHHHHH
Q 011145 151 ------MGGWL-NKEIVKYFEIYADTCF----ASFGD-RVK--NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVA 216 (492)
Q Consensus 151 ------~gg~~-~~~~~~~f~~ya~~~~----~~~gd-~v~--~w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~ 216 (492)
+.|+. .|+..+.|.++++.++ +|||. .|. +|.+||||++..+ |..+. ..+ |
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~----~~e-y--- 179 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT----PEE-Y--- 179 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-----HHH-H---
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC----HHH-H---
Confidence 11222 3566677777665555 55552 465 5689999996421 11111 111 1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccC
Q 011145 217 HHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQL 296 (492)
Q Consensus 217 ~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rl 296 (492)
..+. ..+++++|+.. |..+||-.-. +... . ..+....++ +.++
T Consensus 180 ~~ly---~~~~~~iK~~~---p~~~vGGp~~-----~~~~-~---~~~~~~l~~---------------------~~~~- 222 (486)
T PF01229_consen 180 FELY---DATARAIKAVD---PELKVGGPAF-----AWAY-D---EWCEDFLEF---------------------CKGN- 222 (486)
T ss_dssp HHHH---HHHHHHHHHH----TTSEEEEEEE-----ETT--T---HHHHHHHHH---------------------HHHC-
T ss_pred HHHH---HHHHHHHHHhC---CCCcccCccc-----cccH-H---HHHHHHHHH---------------------HhcC-
Confidence 1222 33566777765 6889985410 1110 0 111111111 1111
Q ss_pred CCCCHHhHHhhcCCccEEEEccCCcceeccCCCCCCCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHH
Q 011145 297 PKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNY 376 (492)
Q Consensus 297 p~ft~ee~~~ikg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~ 376 (492)
.-++|||+++.|.......... .... .... -..+.| .|..+.+.
T Consensus 223 -----------~~~~DfiS~H~y~~~~~~~~~~------~~~~----------------~~~~--~~~~~~-~~~~~~~~ 266 (486)
T PF01229_consen 223 -----------NCPLDFISFHSYGTDSAEDINE------NMYE----------------RIED--SRRLFP-ELKETRPI 266 (486)
T ss_dssp -----------T---SEEEEEEE-BESESE-SS-------EEE----------------EB----HHHHHH-HHHHHHHH
T ss_pred -----------CCCCCEEEEEecccccccccch------hHHh----------------hhhh--HHHHHH-HHHHHHHH
Confidence 1257999999997532211000 0000 0000 001122 24444333
Q ss_pred HHHH-cCCCCEEEeecCCCCCCCCCCCCccccCC-hhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccccCC----C
Q 011145 377 IAKT-YNNPPIYVTENGMDDEENDSSPLHEMLDD-KLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQ----G 450 (492)
Q Consensus 377 ~~~r-Y~~ppI~ITENG~~~~~~~~~~~~~~i~D-~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~----G 450 (492)
+.+. +.+.|+++||=..... . ...++| ..+..|+... +++. .|..+-++.+|++.|.||=.. -
T Consensus 267 ~~~e~~p~~~~~~tE~n~~~~-~-----~~~~~dt~~~aA~i~k~---lL~~--~~~~l~~~sywt~sD~Fee~~~~~~p 335 (486)
T PF01229_consen 267 INDEADPNLPLYITEWNASIS-P-----RNPQHDTCFKAAYIAKN---LLSN--DGAFLDSFSYWTFSDRFEENGTPRKP 335 (486)
T ss_dssp HHTSSSTT--EEEEEEES-SS-T-----T-GGGGSHHHHHHHHH----HHHH--GGGT-SEEEES-SBS---TTSS-SSS
T ss_pred HhhccCCCCceeecccccccC-C-----CcchhccccchhhHHHH---HHHh--hhhhhhhhhccchhhhhhccCCCCCc
Confidence 3332 3444699999554433 1 124455 3455555322 2222 466666688899999998322 1
Q ss_pred CCCccceEEEeCCCCccceecchHHHHHHH
Q 011145 451 YTKRFGLVYVDYKNGLVRHPKSSAYWFMRF 480 (492)
Q Consensus 451 y~~rfGL~~VD~~~~~~R~pK~S~~~y~~~ 480 (492)
+.--|||+. ...++|||++.|.-+
T Consensus 336 f~ggfGLlt------~~gI~KPa~~A~~~L 359 (486)
T PF01229_consen 336 FHGGFGLLT------KLGIPKPAYYAFQLL 359 (486)
T ss_dssp SSS-S-SEE------CCCEE-HHHHHHHHH
T ss_pred eecchhhhh------ccCCCchHHHHHHHH
Confidence 455689997 446999999888643
No 20
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.06 E-value=2.9e-08 Score=109.86 Aligned_cols=264 Identities=20% Similarity=0.238 Sum_probs=153.7
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhh-------
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE------- 149 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~------- 149 (492)
..+..|+++||++|+|++|+| ..|. + ..+++.|=+.||-++.-+.-+....|+..
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s-----h~p~------~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS-----HYPY------S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec-----cCCC------C-------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 457889999999999999995 2332 2 35788889999987765433322222210
Q ss_pred hcCCCC----CHHHHHHHHHHHHHHHHHhCC--CccEEEEccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHH
Q 011145 150 SMGGWL----NKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAH 223 (492)
Q Consensus 150 ~~gg~~----~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Ah 223 (492)
....|. +++..+.+.+-++.+++|+++ -|-.|.+-||+..- .+ ..... +
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~------------~~~~~---~ 429 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQ------------GAREY---F 429 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------ch------------hHHHH---H
Confidence 001222 357788899999999999987 57899999996310 00 00111 2
Q ss_pred HHHHHHHHHhhccCCCCeEEEeecCceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHh
Q 011145 224 AAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKD 303 (492)
Q Consensus 224 a~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee 303 (492)
...++.+|+.. +.-.|..+.+... .+ .
T Consensus 430 ~~l~~~~k~~D---ptR~vt~~~~~~~-~~-~------------------------------------------------ 456 (604)
T PRK10150 430 APLAELTRKLD---PTRPVTCVNVMFA-TP-D------------------------------------------------ 456 (604)
T ss_pred HHHHHHHHhhC---CCCceEEEecccC-Cc-c------------------------------------------------
Confidence 23456667764 3434443322100 00 0
Q ss_pred HHhhcCCccEEEEccCCcceeccCCCCCCCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCC
Q 011145 304 KELVRNSLDFVGLNHYTSRFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNN 383 (492)
Q Consensus 304 ~~~ikg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ 383 (492)
.......+|++|+|.|..-+.... +. . .+ -..|...+....+.|+.
T Consensus 457 ~~~~~~~~Dv~~~N~Y~~wy~~~~------------~~--~-------------------~~-~~~~~~~~~~~~~~~~k 502 (604)
T PRK10150 457 TDTVSDLVDVLCLNRYYGWYVDSG------------DL--E-------------------TA-EKVLEKELLAWQEKLHK 502 (604)
T ss_pred cccccCcccEEEEcccceecCCCC------------CH--H-------------------HH-HHHHHHHHHHHHHhcCC
Confidence 000112369999998864321110 00 0 00 01244455555556666
Q ss_pred CCEEEeecCCCCCCCCC-CCCccccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccccCCCCC----CccceE
Q 011145 384 PPIYVTENGMDDEENDS-SPLHEMLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFEWAQGYT----KRFGLV 458 (492)
Q Consensus 384 ppI~ITENG~~~~~~~~-~~~~~~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~----~rfGL~ 458 (492)
| |+|||.|.+.. ... ...+..-..++...|+..|+.. +++==-|.|-|+|.+.| |.+..|.. ...||+
T Consensus 503 P-~~isEyg~~~~-~~~h~~~~~~~~ee~q~~~~~~~~~~----~~~~p~~~G~~iW~~~D-~~~~~g~~~~~g~~~Gl~ 575 (604)
T PRK10150 503 P-IIITEYGADTL-AGLHSMYDDMWSEEYQCAFLDMYHRV----FDRVPAVVGEQVWNFAD-FATSQGILRVGGNKKGIF 575 (604)
T ss_pred C-EEEEccCCccc-cccccCCCCCCCHHHHHHHHHHHHHH----HhcCCceEEEEEEeeec-cCCCCCCcccCCCcceeE
Confidence 5 99999996542 110 0011122345666666666664 44445899999999999 33332311 356887
Q ss_pred EEeCCCCccceecchHHHHHHHHhc
Q 011145 459 YVDYKNGLVRHPKSSAYWFMRFLKG 483 (492)
Q Consensus 459 ~VD~~~~~~R~pK~S~~~y~~~i~~ 483 (492)
. ..|+||+++++||++.+.
T Consensus 576 ~------~dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 576 T------RDRQPKSAAFLLKKRWTG 594 (604)
T ss_pred c------CCCCChHHHHHHHHHhhc
Confidence 4 678999999999999854
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=1.2e-07 Score=93.83 Aligned_cols=269 Identities=18% Similarity=0.265 Sum_probs=161.4
Q ss_pred cccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE-E-eccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011145 97 SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV-T-LYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASF 174 (492)
Q Consensus 97 si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~v-t-L~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~ 174 (492)
-+-|.-|+|+. | .+| ++.-|.+.+-++++||..-- | +.|--.|.|+.. --+..+...+...++...|++||
T Consensus 66 emKwe~i~p~~-G-~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 66 EMKWEAIEPER-G-RFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred ccccccccCCC-C-ccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 46799999987 8 899 55568999999999997543 2 346788999863 23777899999999999999999
Q ss_pred CCCccEEEEccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeecCceeeeC
Q 011145 175 GDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEAN 254 (492)
Q Consensus 175 gd~v~~w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~g~vGi~~~~~~~~P~ 254 (492)
++.|..|=+.|||-- ...++-.-.|--+.. +.+. + ..|.+..|+.. |+++.-+. ... .
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~---gpd~------I----~~aF~~Aread---P~AkL~~N-DY~----i 196 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT---GPDY------I----KLAFHIAREAD---PDAKLVIN-DYS----I 196 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC---ccHH------H----HHHHHHHHhhC---CCceEEee-ccc----c
Confidence 999999999999864 222222222222111 1111 1 23556666654 67776432 111 1
Q ss_pred CCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHHhhcC-CccEEEEccCCcceeccCCCCCCC
Q 011145 255 SDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRN-SLDFVGLNHYTSRFIAHATKSPEE 333 (492)
Q Consensus 255 ~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~~ikg-~~DFiGiNyY~~~~v~~~~~~~~~ 333 (492)
..+|..... +. -|++.|. -|| ++|=||++.= ++.
T Consensus 197 e~~~~kr~~------~~---------------nlI~~Lk-------------ekG~pIDgiG~QsH----~~~------- 231 (345)
T COG3693 197 EGNPAKRNY------VL---------------NLIEELK-------------EKGAPIDGIGIQSH----FSG------- 231 (345)
T ss_pred cCChHHHHH------HH---------------HHHHHHH-------------HCCCCccceeeeee----ecC-------
Confidence 222321111 10 0111111 145 4899998753 110
Q ss_pred CCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccccCChhHH
Q 011145 334 GSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEMLDDKLRV 413 (492)
Q Consensus 334 ~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri 413 (492)
+| ...-.....+++.. +. +.| |+|||--|... . + .. +..|-
T Consensus 232 ---------------------------~~-~~~~~~~~a~~~~~-k~-Gl~-i~VTELD~~~~-~-P--~~----~~p~~ 272 (345)
T COG3693 232 ---------------------------DG-PSIEKMRAALLKFS-KL-GLP-IYVTELDMSDY-T-P--DS----GAPRL 272 (345)
T ss_pred ---------------------------CC-CCHHHHHHHHHHHh-hc-CCC-ceEEEeeeecc-C-C--CC----ccHHH
Confidence 01 11111223333333 33 776 99999988874 1 1 11 22332
Q ss_pred HHHHHHH--HHHHHHHHcCCCEEEEeccccccccccCCCCCCccc----eEEEeCCCCccceecchHHHHHHHHhc
Q 011145 414 RYFKGYL--SAVAQAIKDGADVRGYFVWSLLDNFEWAQGYTKRFG----LVYVDYKNGLVRHPKSSAYWFMRFLKG 483 (492)
Q Consensus 414 ~yl~~~l--~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfG----L~~VD~~~~~~R~pK~S~~~y~~~i~~ 483 (492)
.-.++.. +.-..+..-+-+|.+.+.|.++|+++|..|..++++ |.. |- .=+|||..++...+.+.
T Consensus 273 ~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~-D~----n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 273 YLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLF-DD----NYQPKPAYKAIAEVLAP 343 (345)
T ss_pred HHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCccc-CC----CCCcchHHHHHHHHhcC
Confidence 2222221 112222335777999999999999999999888885 221 22 34799999999877654
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=1.1e-07 Score=104.18 Aligned_cols=120 Identities=22% Similarity=0.391 Sum_probs=96.1
Q ss_pred chHHHHHHHHHcCCCeeeec-ccccccccCCCCCCCChhHHHHHHHH-HHHHHHcCCcceEEe-ccCCcchhhhhh----
Q 011145 78 RYKEDIDLIAKLGFDAYRFS-ISWSRIFPDGLGTKINMEGITFYNNI-IDALLQKGIQPYVTL-YHWDLPLHLHES---- 150 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~s-i~Wsri~P~~~g~~~n~~g~~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~---- 150 (492)
-|++||++||++|+|++|.+ ++|++++|+. | .+|. .+.|.. ++.+.+.||.+++.- .....|.|+..+
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G-~fdf---~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-G-KFDF---TWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-c-ccCc---ccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 37899999999999999995 7999999999 8 9994 566777 999999999999988 778999999865
Q ss_pred -----------cCCCCCHHHHH-HHHHHHHH----HHHH-hCC--CccEEEEccCccc-cccccccccccCC
Q 011145 151 -----------MGGWLNKEIVK-YFEIYADT----CFAS-FGD--RVKNWITINEPLQ-TAVNGYCTGIFAP 202 (492)
Q Consensus 151 -----------~gg~~~~~~~~-~f~~ya~~----~~~~-~gd--~v~~w~t~NEp~~-~~~~gy~~G~~~p 202 (492)
.|+|.+-.... .+.+|++. +.+| ||+ .|--|.+-||-.. .+.+.|+...|++
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~ 177 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRL 177 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHH
Confidence 46775532222 35555555 8888 876 6899999999876 6777777776663
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.30 E-value=8.7e-06 Score=82.17 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=63.5
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcC--
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG-- 152 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g-- 152 (492)
....++.||.+||++|+|++|++- .|. + .++++.|-+.||-++.-+.....-.|-. .|
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~------~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~ 93 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP------S-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNC 93 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCT
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC------c-------HHHHHHHhhcCCEEEEeccccccCcccc--CCcc
Confidence 457889999999999999999943 222 2 3577888899998887654322111110 11
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHhCC--CccEEEEccCc
Q 011145 153 --GWLNKEIVKYFEIYADTCFASFGD--RVKNWITINEP 187 (492)
Q Consensus 153 --g~~~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp 187 (492)
--.+++..+.+.+-++.+++++.+ -|-.|.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 94 NYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp SCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 013578888898899999999987 68999999997
No 24
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=0.00092 Score=65.75 Aligned_cols=289 Identities=17% Similarity=0.250 Sum_probs=158.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCC-CC----CCChhHHHHHHHHHHHHHHcCCcceEEec---cCCcchhhhhhc
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGL-GT----KINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESM 151 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~----~~n~~g~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~ 151 (492)
++=++.||+.|+|.+|+-| |. -|... |. .-|. ++---++-..++++||++++.+| ||.=|.-- .+.
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wn--dP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kP 139 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WN--DPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKP 139 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ec--CCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCc
Confidence 4446899999999999965 31 23211 10 1221 44445677788999999999997 46666543 233
Q ss_pred CCCCCH---HHHHHHHHHHHHHHHHh---CCCccEEEEccCccccccccccccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 011145 152 GGWLNK---EIVKYFEIYADTCFASF---GDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAA 225 (492)
Q Consensus 152 gg~~~~---~~~~~f~~ya~~~~~~~---gd~v~~w~t~NEp~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~l~Aha~ 225 (492)
-.|.+- .--.+.-+|.+.++..+ |-....-++=||-| .|+ .||-|..+ -+.-+-.|+.+
T Consensus 140 kaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn----~gf---lwp~Ge~~-----~f~k~a~L~n~--- 204 (403)
T COG3867 140 KAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETN----GGF---LWPDGEGR-----NFDKMAALLNA--- 204 (403)
T ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccC----Cce---eccCCCCc-----ChHHHHHHHHH---
Confidence 567663 23333445555555555 44667777999976 222 26655432 12223334444
Q ss_pred HHHHHHHhhccCCCCeEEEeecCceeeeCCCCHHHHHHHHHHHHHhhhcccccccccCCcHHHHHhhcccCCCCCHHhHH
Q 011145 226 AFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKE 305 (492)
Q Consensus 226 a~~~~~~~~~~~~~g~vGi~~~~~~~~P~~~~~~D~~Aa~r~~~~~~~~f~dpl~~G~YP~~~~~~~~~rlp~ft~ee~~ 305 (492)
+++++|+.. +.-+|-+.+. .|.+++. ..|+.|-+.
T Consensus 205 g~~avrev~---p~ikv~lHla----~g~~n~~-------------y~~~fd~lt------------------------- 239 (403)
T COG3867 205 GIRAVREVS---PTIKVALHLA----EGENNSL-------------YRWIFDELT------------------------- 239 (403)
T ss_pred HhhhhhhcC---CCceEEEEec----CCCCCch-------------hhHHHHHHH-------------------------
Confidence 566677753 5666644332 2333221 122222111
Q ss_pred hhcCCccEEEEccCCcceeccCCCCCCCCCccchhhhhhhhhcCCCccccCccCCCCcccChHHHHHHHHHHHHHcCCCC
Q 011145 306 LVRNSLDFVGLNHYTSRFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPP 385 (492)
Q Consensus 306 ~ikg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~~~~rY~~pp 385 (492)
.-+-.+|.||.+||.- .. | + -..|...|+.+..||++.
T Consensus 240 k~nvdfDVig~SyYpy--Wh-------------------------g----t----------l~nL~~nl~dia~rY~K~- 277 (403)
T COG3867 240 KRNVDFDVIGSSYYPY--WH-------------------------G----T----------LNNLTTNLNDIASRYHKD- 277 (403)
T ss_pred HcCCCceEEeeecccc--cc-------------------------C----c----------HHHHHhHHHHHHHHhcCe-
Confidence 1123569999999951 00 0 0 125778899999999986
Q ss_pred EEEeecCCCCCCCC--------C---CCCccccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccc-cCCCCCC
Q 011145 386 IYVTENGMDDEEND--------S---SPLHEMLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDNFE-WAQGYTK 453 (492)
Q Consensus 386 I~ITENG~~~~~~~--------~---~~~~~~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn~E-W~~Gy~~ 453 (492)
+||.|.+.+...++ + .+..-.+.=+-...++++-++.|... -+-+=.|.|+|-.-=+-- -.+|+..
T Consensus 278 VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~wipv~~g~gwat 355 (403)
T COG3867 278 VMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPAWIPVVLGSGWAT 355 (403)
T ss_pred EEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEecccceeccCCCcccc
Confidence 99999876332111 0 01011111133566777776665443 355678999996543322 2234555
Q ss_pred ccceEEEeCCC-------------CccceecchHHHHHH
Q 011145 454 RFGLVYVDYKN-------------GLVRHPKSSAYWFMR 479 (492)
Q Consensus 454 rfGL~~VD~~~-------------~~~R~pK~S~~~y~~ 479 (492)
.||.-|.. ++ +..-.|-||...|.-
T Consensus 356 ~~~~~y~~-e~w~~gsavdNqaLfdf~G~~LPSl~vFn~ 393 (403)
T COG3867 356 SYAAKYDP-ENWGEGSAVDNQALFDFNGHPLPSLNVFNY 393 (403)
T ss_pred chhhccCc-ccccCCCccchhhhhhccCCcCcchhhhhh
Confidence 45444321 11 123467777777754
No 25
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=4.8e-05 Score=80.25 Aligned_cols=117 Identities=20% Similarity=0.172 Sum_probs=85.3
Q ss_pred ccchhhch-----HHHHHHHHHcCCCeeeecccccccccCC--CCCCCC-hhHHHHHHHHHHHHHHcCCcceEEeccCCc
Q 011145 72 AVDHYHRY-----KEDIDLIAKLGFDAYRFSISWSRIFPDG--LGTKIN-MEGITFYNNIIDALLQKGIQPYVTLYHWDL 143 (492)
Q Consensus 72 a~d~y~ry-----~eDi~l~~~lG~~~~R~si~Wsri~P~~--~g~~~n-~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~ 143 (492)
..-....| ++|+..||++|+|++|+.|.|..+.+.. .. .+. ...+...+++|+.+++.||.+++.||+..-
T Consensus 63 ~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p-~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~ 141 (407)
T COG2730 63 QGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNP-YLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG 141 (407)
T ss_pred cccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCC-CeecchHHHHHHHHHHHHHhcCeeEEEEecccCC
Confidence 33445556 8999999999999999999866655532 12 233 344558999999999999999999998663
Q ss_pred chhhhhhc---CCCC-CHHHHHHHHHHHHHHHHHhCC--CccEEEEccCccc
Q 011145 144 PLHLHESM---GGWL-NKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQ 189 (492)
Q Consensus 144 P~~l~~~~---gg~~-~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~ 189 (492)
..--.+.. +.+. ...+++.+.+-.++++.+|++ .|-...++|||+.
T Consensus 142 ~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 142 GNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 23222221 1222 357779999999999999997 3555789999994
No 26
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.79 E-value=0.00036 Score=68.25 Aligned_cols=64 Identities=16% Similarity=0.361 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccccc
Q 011145 369 GLRKVLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEMLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLLDN 444 (492)
Q Consensus 369 Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~Dn 444 (492)
++...|..++++|++| |+|||.|+... .. .-.+....+||++.+..+ +.---|.+|+..+.++.
T Consensus 152 ~~~~~i~~~~~~~~kP-IWITEf~~~~~-~~------~~~~~~~~~fl~~~~~~l----d~~~~VeryawF~~~~~ 215 (239)
T PF11790_consen 152 DFKDYIDDLHNRYGKP-IWITEFGCWNG-GS------QGSDEQQASFLRQALPWL----DSQPYVERYAWFGFMND 215 (239)
T ss_pred HHHHHHHHHHHHhCCC-EEEEeecccCC-CC------CCCHHHHHHHHHHHHHHH----hcCCCeeEEEecccccc
Confidence 5778899999999977 99999998642 11 112455666666555554 44478999998884443
No 27
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.56 E-value=0.00044 Score=70.54 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=76.9
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec--------cCCcchhhhh
Q 011145 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--------HWDLPLHLHE 149 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~~ 149 (492)
.|++-++.||++|+|++-+-+.|.-.||.+ | ++|..|..-.+.+|+.++++|+.+++-.- .-++|.||..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g-~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-G-QFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-T-B---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-C-cccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 478899999999999999999999999998 8 99999988899999999999999777532 2459999986
Q ss_pred hcCC---CCCHHHHHHHHHHHHHHHHHhCC-------CccEEEEccCcc
Q 011145 150 SMGG---WLNKEIVKYFEIYADTCFASFGD-------RVKNWITINEPL 188 (492)
Q Consensus 150 ~~gg---~~~~~~~~~f~~ya~~~~~~~gd-------~v~~w~t~NEp~ 188 (492)
+.+. -.++.+.+...+|.+.+++...+ -|-.-++=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 5333 23367777777777777777754 355566777743
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.33 E-value=0.0087 Score=61.76 Aligned_cols=99 Identities=19% Similarity=0.334 Sum_probs=55.6
Q ss_pred HHcCCCeeeecc---c------------ccccc--cCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhh
Q 011145 87 AKLGFDAYRFSI---S------------WSRIF--PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (492)
Q Consensus 87 ~~lG~~~~R~si---~------------Wsri~--P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 149 (492)
+.+|++.+||.| + |.|.+ +...| .+|..+=+-=+.++++++++|+.-++ ++-+..|.|+..
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg-~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~ 134 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADG-SYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTK 134 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS--B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCC-CcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhc
Confidence 358999999977 3 33332 12225 56654434446689999999999766 667889998864
Q ss_pred hcC----C-----CCCHHHHHHHHHHHHHHHHHhCC---CccEEEEccCcc
Q 011145 150 SMG----G-----WLNKEIVKYFEIYADTCFASFGD---RVKNWITINEPL 188 (492)
Q Consensus 150 ~~g----g-----~~~~~~~~~f~~ya~~~~~~~gd---~v~~w~t~NEp~ 188 (492)
- | + =+.++..+.|++|-..|+++|.. .+++-.++|||+
T Consensus 135 N-G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 135 N-GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQ 184 (384)
T ss_dssp S-SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TT
T ss_pred C-CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCC
Confidence 2 2 1 25578899999999999999943 689999999998
No 29
>PLN03059 beta-galactosidase; Provisional
Probab=97.17 E-value=0.0042 Score=69.95 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=89.3
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec--------cCCcchhhh
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--------HWDLPLHLH 148 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~ 148 (492)
..|++=|+.||++|+|++-.=+.|.-.||.+ | ++|.+|..=..++|+.+.+.|+-+|+-.- .-++|.||.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G-~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~ 136 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-G-NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLK 136 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC-C-eeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhh
Confidence 3588889999999999999999999999998 9 99999999999999999999998887542 468999997
Q ss_pred hhcCC---CCCHHHHHHHHHHHHHHHHHhC---------CCccEEEEccCcc
Q 011145 149 ESMGG---WLNKEIVKYFEIYADTCFASFG---------DRVKNWITINEPL 188 (492)
Q Consensus 149 ~~~gg---~~~~~~~~~f~~ya~~~~~~~g---------d~v~~w~t~NEp~ 188 (492)
...|- -.++.+.++-.+|.+.+++..+ .-|-..++=||-.
T Consensus 137 ~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 137 YVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred cCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 54221 2357788888888888888773 2356667778843
No 30
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.13 E-value=0.048 Score=54.79 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=48.9
Q ss_pred chHHHHHHHHHcCCCeeee-cccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCC
Q 011145 78 RYKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~-si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~ 156 (492)
-.+.||.+||+||+|+.|+ +|. |+ .| .+..+..|.++||-+++.|. .|.--.++...|..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~vd-----p~-----~n------Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~~P~~s 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYSVD-----PS-----KN------HDECMSAFADAGIYVILDLN---TPNGSINRSDPAPS 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES--------TT-----S--------HHHHHHHHHTT-EEEEES----BTTBS--TTS----
T ss_pred HHHHhHHHHHHcCCCEEEEEEeC-----CC-----CC------HHHHHHHHHhCCCEEEEecC---CCCccccCCCCcCC
Confidence 6799999999999999998 343 33 23 36788999999999999995 44211122111111
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CccEEEEccC
Q 011145 157 KEIVKYFEIYADTCFASFGD--RVKNWITINE 186 (492)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NE 186 (492)
=....|.+|.. +++.|.. .+-....=||
T Consensus 115 -w~~~l~~~~~~-vid~fa~Y~N~LgFf~GNE 144 (314)
T PF03198_consen 115 -WNTDLLDRYFA-VIDAFAKYDNTLGFFAGNE 144 (314)
T ss_dssp ---HHHHHHHHH-HHHHHTT-TTEEEEEEEES
T ss_pred -CCHHHHHHHHH-HHHHhccCCceEEEEecce
Confidence 12344555544 4455553 4555555566
No 31
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.00 E-value=0.052 Score=63.84 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=63.2
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec---c-CCcchhhhhh
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---H-WDLPLHLHES 150 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~---H-~~~P~~l~~~ 150 (492)
....+++||++||++|+|++|+| ..|.. ..+.+.|=+.||-++--.. | |.....+.
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~-- 412 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND-------------PRFYELCDIYGLFVMAETDVESHGFANVGDIS-- 412 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHCCCEEEECCcccccCcccccccc--
Confidence 35678999999999999999996 34443 2467888899998766431 1 11110000
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC--CccEEEEccCc
Q 011145 151 MGGWLNKEIVKYFEIYADTCFASFGD--RVKNWITINEP 187 (492)
Q Consensus 151 ~gg~~~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp 187 (492)
+ ...++...+.|.+=++.+++|.++ -|-.|..-||.
T Consensus 413 ~-~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 413 R-ITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred c-ccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 0 012355667777778899999987 57899999995
No 32
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.48 E-value=0.0027 Score=65.75 Aligned_cols=107 Identities=17% Similarity=0.322 Sum_probs=82.1
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-c-----------CCc
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDL 143 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~ 143 (492)
+.-.+..++.||.+||..+-+.+=|..+|+.+++ ++| |..|+++++.+++.|++..+.|. | ..+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~-~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQ-QYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTT-B------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCC-ccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 4478999999999999999999999999999767 999 88999999999999999888763 3 478
Q ss_pred chhhhhh-----------cCC--------CCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 144 PLHLHES-----------MGG--------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 144 P~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
|.|+.+. .|. |....+++.+.+|-+...++|.+.. -||-|..+
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~v 152 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQV 152 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEEE
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEEe
Confidence 9998642 232 5555559999999999999998765 56666543
No 33
>PLN02803 beta-amylase
Probab=96.36 E-value=0.009 Score=63.52 Aligned_cols=107 Identities=18% Similarity=0.255 Sum_probs=83.5
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-c-----------CCcc
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDLP 144 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P 144 (492)
.-.+..++.||.+||..+-+.+=|--+|+.+.+ ++| |..|+++++.+++.|++..+.|. | -.+|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPM-KYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 447789999999999999999999999998877 999 88899999999999999777765 3 3599
Q ss_pred hhhhhh-----------cCCC----------------CCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 145 LHLHES-----------MGGW----------------LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 145 ~~l~~~-----------~gg~----------------~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
.|+.+. ..|- ..+.-++.+.+|-+.....|.+... -||.|..+
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 998753 0121 2233457788888888888877654 47777654
No 34
>PLN02161 beta-amylase
Probab=96.31 E-value=0.011 Score=62.55 Aligned_cols=111 Identities=15% Similarity=0.260 Sum_probs=86.8
Q ss_pred cchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-cC----------
Q 011145 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HW---------- 141 (492)
Q Consensus 73 ~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~-H~---------- 141 (492)
..+..-.+..++.||.+||..+-+.+=|--+|+.+.+ ++| |..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPL-EFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 4566678889999999999999999999999998877 999 88999999999999999777765 32
Q ss_pred -Ccchhhhhh-----------cCC----------------CCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 142 -DLPLHLHES-----------MGG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 142 -~~P~~l~~~-----------~gg----------------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
.+|.|+.+. ..| +..+.-++.+.+|-+-....|.+... -||.|..+
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998752 112 12233457888888888888877664 37777654
No 35
>PLN00197 beta-amylase; Provisional
Probab=96.04 E-value=0.023 Score=60.71 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=84.0
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-c-----------CCcc
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDLP 144 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P 144 (492)
.-.+..++.||.+||..+-+.+=|--+|+.+++ ++| |..|+++++.+++.|++..+.|. | -.+|
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~-~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPG-VYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 347889999999999999999999999998877 999 78899999999999999777765 3 3599
Q ss_pred hhhhhh-----------cCC----------------CCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 145 LHLHES-----------MGG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 145 ~~l~~~-----------~gg----------------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
.|+.+. ..| +..+.-++.+.+|-+-.-..|.+... -||.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 998753 112 12223367888888888888877655 36777654
No 36
>PLN02801 beta-amylase
Probab=95.84 E-value=0.04 Score=58.43 Aligned_cols=109 Identities=12% Similarity=0.255 Sum_probs=83.0
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-c-----------CCc
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDL 143 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~ 143 (492)
-.-.+..++.||.+||..+-+.+=|--+|+.+.+ ++| |..|+++++.++++|++..+.|. | ..+
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 111 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPK-QYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPI 111 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-ccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 3447889999999999999999999999998867 999 88899999999999999777664 3 359
Q ss_pred chhhhhh-----------cCC----------------CCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 144 PLHLHES-----------MGG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 144 P~~l~~~-----------~gg----------------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
|.|+.+. ..| +..+.-++.+.+|-+-...+|.+...- -||.|..+
T Consensus 112 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~V 183 (517)
T PLN02801 112 PQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIEV 183 (517)
T ss_pred CHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEEE
Confidence 9998753 012 122335688888888888888775421 24555443
No 37
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=95.61 E-value=0.06 Score=54.23 Aligned_cols=104 Identities=19% Similarity=0.303 Sum_probs=62.7
Q ss_pred hHHHHHHHHHcCCCeeeecc--ccccc-c-------c--CCCC-----CCCChhHHHHHHHHHHHHHHcCCcceEEeccC
Q 011145 79 YKEDIDLIAKLGFDAYRFSI--SWSRI-F-------P--DGLG-----TKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si--~Wsri-~-------P--~~~g-----~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~ 141 (492)
++.=++..++-|+|.+|+.+ .|... . | ..++ +.+|++=+++.+++|+.|.+.||+|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447788999999999986 44433 1 1 1101 1379999999999999999999999877665
Q ss_pred CcchhhhhhcCCCCC---HHHHHHHHHHHHHHHHHhCCC-ccEEEEccCc
Q 011145 142 DLPLHLHESMGGWLN---KEIVKYFEIYADTCFASFGDR-VKNWITINEP 187 (492)
Q Consensus 142 ~~P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~gd~-v~~w~t~NEp 187 (492)
+.|.. + |.|-. .-..+.-.+|.+.|++||+.. =-.|++-||-
T Consensus 111 g~~~~---~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPYV---P-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHHH-----------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCccc---c-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 22321 1 43432 334666778999999999998 4779998884
No 38
>PLN02905 beta-amylase
Probab=95.50 E-value=0.052 Score=58.78 Aligned_cols=111 Identities=12% Similarity=0.184 Sum_probs=83.5
Q ss_pred cchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-c-----------
Q 011145 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H----------- 140 (492)
Q Consensus 73 ~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~-H----------- 140 (492)
..+..-.+..++.||.+||..+-+.+=|--+|+.+.+ ++| |..|+++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~-~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQ-EYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 3556668899999999999999999999999998877 999 88899999999999999777765 3
Q ss_pred CCcchhhhhh-----------cCCC----------------CCHHHHHHHHHHHHHHHHHhCCCccEEEEccCcc
Q 011145 141 WDLPLHLHES-----------MGGW----------------LNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (492)
Q Consensus 141 ~~~P~~l~~~-----------~gg~----------------~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 188 (492)
-.||.|+.+. ..|- ..+.-++.+.+|.+-....|.+.+.- -||.|..
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~ 431 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVE 431 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEE
Confidence 2599998753 0121 22345577888877777777664321 1445544
No 39
>PLN02705 beta-amylase
Probab=95.39 E-value=0.071 Score=57.56 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=81.8
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-c-----------CC
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WD 142 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 142 (492)
+-.-.+..++.||.+||..+-+.+=|--+|+.+.+ ++| |..|+++++.+++.|++..+.|. | -.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~-~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQ-KYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 34557889999999999999999999999998867 999 88899999999999999777664 3 25
Q ss_pred cchhhhhh-----------cCCC----------------CCHHHHHHHHHHHHHHHHHhCCCccEEEEccCcc
Q 011145 143 LPLHLHES-----------MGGW----------------LNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (492)
Q Consensus 143 ~P~~l~~~-----------~gg~----------------~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 188 (492)
||.|+.+. .-|- ..+.-++.+.+|.+..-..|.+.+.- -||.|..
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~ 413 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVE 413 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEE
Confidence 99998753 0121 22334577888888777777665311 1455544
No 40
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.21 E-value=0.074 Score=58.01 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=80.8
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEe--------ccCCcchhhhh
Q 011145 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--------YHWDLPLHLHE 149 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~ 149 (492)
.|++=|+.+|++|+|+.-.=+.|.-++|.+ | +++.+|.-=...+|..+.++|+-+++-+ .|-++|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g-~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-G-KYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-C-cccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 478889999999999999999999999999 8 8999998778889999999998766643 36789999987
Q ss_pred hcCC---CCCHHHHHHHHHHHHHHHHHhC
Q 011145 150 SMGG---WLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 150 ~~gg---~~~~~~~~~f~~ya~~~~~~~g 175 (492)
..|. =.|+.+..++.+|.+.++...+
T Consensus 128 ~pg~~~Rt~nepfk~~~~~~~~~iv~~mk 156 (649)
T KOG0496|consen 128 VPGIVFRTDNEPFKAEMERWTTKIVPMMK 156 (649)
T ss_pred CCceEEecCChHHHHHHHHHHHHHHHHHH
Confidence 6454 3468899999999999998553
No 41
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.34 E-value=0.24 Score=45.63 Aligned_cols=102 Identities=21% Similarity=0.399 Sum_probs=68.1
Q ss_pred hchHHHHHHHHHcCCCeeeeccccccc-----ccCCC--CCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhh
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRI-----FPDGL--GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri-----~P~~~--g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 149 (492)
.+|+++++.|+++|++++=+- |+.. .|+.- + .+.....+....+++++.+.||++++.|+. -|.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~-~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~ 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPG-GFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCc-cccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc
Confidence 369999999999999988433 3333 22210 1 233344578899999999999999999984 4556552
Q ss_pred hcCCCCCHH-HHHHHHHHHHHHHHHhCC--CccEEEEccCcc
Q 011145 150 SMGGWLNKE-IVKYFEIYADTCFASFGD--RVKNWITINEPL 188 (492)
Q Consensus 150 ~~gg~~~~~-~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~ 188 (492)
.+.+ -++.=..-++.+.++||. -+..|=+-.|+.
T Consensus 95 -----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 -----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 2211 233334567778888987 356677767765
No 42
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.03 E-value=0.35 Score=56.97 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=64.2
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec---cCCcchhhhhhc
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESM 151 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~ 151 (492)
...+++.||++||++|+|++|+| ..|.. .++.+.|=+.||-++--+. |.-.|..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------------p~fydlcDe~GilV~dE~~~e~hg~~~~~----- 425 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------------PLWYELCDRYGLYVVDEANIETHGMVPMN----- 425 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHcCCEEEEecCccccCCcccc-----
Confidence 45678999999999999999995 33432 2456788889998776542 2111110
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCC--CccEEEEccCcc
Q 011145 152 GGWLNKEIVKYFEIYADTCFASFGD--RVKNWITINEPL 188 (492)
Q Consensus 152 gg~~~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~ 188 (492)
-...+++..+.+.+=++.+++|.++ -|-.|...||+.
T Consensus 426 ~~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 426 RLSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 0113467777788888899999987 578999999964
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.09 E-value=0.6 Score=53.37 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=68.6
Q ss_pred ccchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhc
Q 011145 72 AVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM 151 (492)
Q Consensus 72 a~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 151 (492)
.+-.+..+.+|+++||++|+|++|.| ..|.. ..+.+.|-+.||-++=-..+ +- +
T Consensus 316 ~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-------------~~~ydLcDelGllV~~Ea~~-----~~---~ 369 (808)
T COG3250 316 RVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-------------EEFYDLCDELGLLVIDEAMI-----ET---H 369 (808)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-------------HHHHHHHHHhCcEEEEecch-----hh---c
Confidence 35566779999999999999999998 55654 24566777889987764432 11 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCC--CccEEEEccCcc
Q 011145 152 GGWLNKEIVKYFEIYADTCFASFGD--RVKNWITINEPL 188 (492)
Q Consensus 152 gg~~~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~ 188 (492)
|+...++..+...+=++.+++|-++ -|-.|+.=||.+
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 4446677777778888899999887 588999999965
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=90.07 E-value=0.58 Score=48.57 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=72.1
Q ss_pred HHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhc-CCCCCH-HHHHHH
Q 011145 86 IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM-GGWLNK-EIVKYF 163 (492)
Q Consensus 86 ~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~-gg~~~~-~~~~~f 163 (492)
-+|+|++..|+---|.-++-.- -++ +.+++++++.+.+.|+.-+.+-+||..+.-....+ +.-..+ ...+.+
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~---~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL---FYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhhceeeehhcceeeeeeccc---cCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 4689999999988888333332 456 78999999999999955555667777776544322 223333 589999
Q ss_pred HHHHHHHHHHhCCC---ccEEEEccCcccc
Q 011145 164 EIYADTCFASFGDR---VKNWITINEPLQT 190 (492)
Q Consensus 164 ~~ya~~~~~~~gd~---v~~w~t~NEp~~~ 190 (492)
+++++.|+.+||-+ .-....+||||..
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 99999999999962 3445689999954
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.73 E-value=0.14 Score=53.94 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=79.7
Q ss_pred hHHHHHHHHHcCCCeeeecccc-cccccCCCCCCCChhH-HHHHHHHHHHHHHcCCcceEEec----cCCcchhhhhhcC
Q 011145 79 YKEDIDLIAKLGFDAYRFSISW-SRIFPDGLGTKINMEG-ITFYNNIIDALLQKGIQPYVTLY----HWDLPLHLHESMG 152 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W-sri~P~~~g~~~n~~g-~~~y~~~i~~l~~~gi~p~vtL~----H~~~P~~l~~~~g 152 (492)
.+.|++.|+.+|++..|++|-= ... -+..| ..|.+. +.+.+.+++.+...+|++++||. |++--.|...=.|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~~G-~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDKEG-YRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhhhc-eecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 4678999999999999999533 221 12226 566665 88999999999999999999987 4222222110002
Q ss_pred C------CCCHHHHHHHHHHHHHHHHHhCC--CccEEEEccCccc
Q 011145 153 G------WLNKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQ 189 (492)
Q Consensus 153 g------~~~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~ 189 (492)
+ ...+.+..-|.+|++.+++.|+- .+--|+.-|||.+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 45578888999999999998886 5688999999765
No 46
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=86.52 E-value=7.3 Score=39.21 Aligned_cols=87 Identities=22% Similarity=0.438 Sum_probs=62.6
Q ss_pred hhchHHHHHHHHHcCCCeeeec-c--cccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcC
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFS-I--SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~s-i--~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g 152 (492)
..||.+--++++++|||..-+. + .-..+ ..+-++-+.++-+.++..||++.+++. |..|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~L---------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLL---------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGG---------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhc---------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 4578888899999999998764 2 22222 222267778999999999999999995 7888765 5
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHHhCC
Q 011145 153 G-----WLNKEIVKYFEIYADTCFASFGD 176 (492)
Q Consensus 153 g-----~~~~~~~~~f~~ya~~~~~~~gd 176 (492)
| -++++++.+|.+=++.+.++.-|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5 46789999999999999998855
No 47
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=80.28 E-value=11 Score=36.78 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCcceEEecc--------------CCcchhhhh----------------hcCC----CCCHH---HH
Q 011145 118 TFYNNIIDALLQKGIQPYVTLYH--------------WDLPLHLHE----------------SMGG----WLNKE---IV 160 (492)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~H--------------~~~P~~l~~----------------~~gg----~~~~~---~~ 160 (492)
+.++.+|+.-+++|.++|+||-= ...|.|-.. +.+| ..+|. ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 68899999999999999999862 112222100 0111 11333 11
Q ss_pred HHHHHHHHHHHHHhCCC-----ccEEEEccCcccc
Q 011145 161 KYFEIYADTCFASFGDR-----VKNWITINEPLQT 190 (492)
Q Consensus 161 ~~f~~ya~~~~~~~gd~-----v~~w~t~NEp~~~ 190 (492)
..-.+++..+..+||.. |++|..=|||.+.
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW 138 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLW 138 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhh
Confidence 23345577778888765 9999999999864
No 48
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=80.07 E-value=9 Score=38.22 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=73.1
Q ss_pred CccceeccccCCccccCCCCCcccchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHH
Q 011145 50 ASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQ 129 (492)
Q Consensus 50 ~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~ 129 (492)
.+.|+.|....+. ..+..+.-.+.++++=|+.++++|+..+=+.-.|+.-.............-....++++..++
T Consensus 9 k~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 5667766552221 122345557888999999999999999999999987433221001111112455899999999
Q ss_pred cCCcceEEeccCC------cchhhhhh------cC------C---CCCHHHHHHHHHHHHHHHHH
Q 011145 130 KGIQPYVTLYHWD------LPLHLHES------MG------G---WLNKEIVKYFEIYADTCFAS 173 (492)
Q Consensus 130 ~gi~p~vtL~H~~------~P~~l~~~------~g------g---~~~~~~~~~f~~ya~~~~~~ 173 (492)
+|+.+++-.+|-+ +=.-+.+. .| + -.+...++.+.+.++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999988755 11111111 12 2 34467888888888888874
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=78.17 E-value=9.4 Score=33.78 Aligned_cols=93 Identities=13% Similarity=0.253 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCeeeeccc--cc-ccccCCCCC-CCChhHHHHHHHHHHHHHHcCCcceEEecc-------CCcchhhhh
Q 011145 81 EDIDLIAKLGFDAYRFSIS--WS-RIFPDGLGT-KINMEGITFYNNIIDALLQKGIQPYVTLYH-------WDLPLHLHE 149 (492)
Q Consensus 81 eDi~l~~~lG~~~~R~si~--Ws-ri~P~~~g~-~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H-------~~~P~~l~~ 149 (492)
+=++.||++|+|+.-+... +- --.|+..|. ....+ -+...++|++|.++||++++-+-. -..|.|+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 3468899999999998332 11 113333220 22223 478899999999999999986543 246777652
Q ss_pred hc-C-----------CC----CCHHHHHHHHHHHHHHHHHh
Q 011145 150 SM-G-----------GW----LNKEIVKYFEIYADTCFASF 174 (492)
Q Consensus 150 ~~-g-----------g~----~~~~~~~~f~~ya~~~~~~~ 174 (492)
.- | || .|....+...+-.+.++++|
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 21 1 23 34456677777777777777
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=75.78 E-value=11 Score=38.39 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=67.2
Q ss_pred hhchHHHHHHHHHcCCCeeeecccc-------cccccCCC---CCCCChhHHHHHHHHHHHHHHcCCcceEEe-cc----
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSISW-------SRIFPDGL---GTKINMEGITFYNNIIDALLQKGIQPYVTL-YH---- 140 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~W-------sri~P~~~---g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL-~H---- 140 (492)
-...++-++.|+++|+|++=+.+.+ |.++|... |.+....|.+....+|+++.++||++..-+ +.
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3456888999999999987654433 33344221 111122367888999999999999988654 11
Q ss_pred ------CCcchhhhhh-------c----CC--CCC---HHHHHHHHHHHHHHHHHhC
Q 011145 141 ------WDLPLHLHES-------M----GG--WLN---KEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 141 ------~~~P~~l~~~-------~----gg--~~~---~~~~~~f~~ya~~~~~~~g 175 (492)
-..|.|+... + |+ |+| |++.+...+-++.|+++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1346664311 1 22 555 6999999999999999995
No 51
>smart00642 Aamy Alpha-amylase domain.
Probab=75.53 E-value=8.7 Score=35.29 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=44.0
Q ss_pred hhhchHHHHHHHHHcCCCeeeeccccccccc--CCCC------CCCCh--hHHHHHHHHHHHHHHcCCcceEEec
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFP--DGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P--~~~g------~~~n~--~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.+....+-++.+++||++++-++--+..... ...| ..+++ -..+-++++|++|.++||++|+.+.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3555677788999999999998755444421 1101 01111 1246679999999999999999874
No 52
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.56 E-value=15 Score=39.32 Aligned_cols=111 Identities=18% Similarity=0.344 Sum_probs=72.6
Q ss_pred hhchHHHHHHHHHcCCCeeeec----ccccccccCC----------------------------CCCCCChhH----HHH
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFS----ISWSRIFPDG----------------------------LGTKINMEG----ITF 119 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~s----i~Wsri~P~~----------------------------~g~~~n~~g----~~~ 119 (492)
|.||+..|+-|+=.|+|..=.. +-|.+|+-.- .| ....+. +-.
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgG-pLs~aw~~~ql~L 155 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGG-PLSPAWMLNQLLL 155 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCC-CCCHHHHHHHHHH
Confidence 6899999999999999965432 2344443321 02 222221 222
Q ss_pred HHHHHHHHHHcCCcceEEeccCCcchhhhhhc--------CCC---------------CCHHHHHHHHHHHHHHHHHhCC
Q 011145 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGW---------------LNKEIVKYFEIYADTCFASFGD 176 (492)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------gg~---------------~~~~~~~~f~~ya~~~~~~~gd 176 (492)
=.++|+.+++-||+|++.-+--..|..|..-+ +-| ..|-+.+-=..|-+...+.||.
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 35899999999999999988878888886431 222 2344555566778889999996
Q ss_pred CccEE--EEccCc
Q 011145 177 RVKNW--ITINEP 187 (492)
Q Consensus 177 ~v~~w--~t~NEp 187 (492)
--..+ =||||.
T Consensus 236 ~tniy~~DpFNE~ 248 (666)
T KOG2233|consen 236 VTNIYSADPFNEI 248 (666)
T ss_pred cccccccCccccc
Confidence 32222 288884
No 53
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=73.06 E-value=2.8 Score=42.69 Aligned_cols=80 Identities=19% Similarity=0.423 Sum_probs=36.8
Q ss_pred HHHHHHHHHH--cCCCCEEEeecCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHcCCCE-----EEEecccccc
Q 011145 371 RKVLNYIAKT--YNNPPIYVTENGMDDEENDSSPLHEMLDDKLRVRYFKGYLSAVAQAIKDGADV-----RGYFVWSLLD 443 (492)
Q Consensus 371 ~~~L~~~~~r--Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v-----~GY~~WSl~D 443 (492)
.+.+...-++ +++.+|+|||.|++.. .+ .... ..=-+.+.+.+.+.+.+|.+. .-+|+-+++|
T Consensus 213 ~da~~~a~~~~g~~~~~vvv~ETGWPs~-G~---~~a~------~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~Fd 282 (310)
T PF00332_consen 213 VDAVYAAMEKLGFPNVPVVVGETGWPSA-GD---PGAT------PENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFD 282 (310)
T ss_dssp HHHHHHHHHTTT-TT--EEEEEE---SS-SS---TTCS------HHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB-
T ss_pred HHHHHHHHHHhCCCCceeEEeccccccC-CC---CCCC------cchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEec
Confidence 3344444444 4455799999999986 32 0001 111234445555555566554 2467778887
Q ss_pred ccccCCC--CCCccceEEEe
Q 011145 444 NFEWAQG--YTKRFGLVYVD 461 (492)
Q Consensus 444 n~EW~~G--y~~rfGL~~VD 461 (492)
- .|..| .++.|||++-|
T Consensus 283 E-~~K~~~~~E~~wGlf~~d 301 (310)
T PF00332_consen 283 E-NWKPGPEVERHWGLFYPD 301 (310)
T ss_dssp --TTSSSSGGGGG--SB-TT
T ss_pred C-cCCCCCcccceeeeECCC
Confidence 4 56655 58899999744
No 54
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=71.07 E-value=13 Score=35.54 Aligned_cols=78 Identities=18% Similarity=0.345 Sum_probs=53.2
Q ss_pred cchhhchHHHHHHHHHcCCCeeeec----------------------ccccccccCCCCCCCChhHHHHHHHHHHHHHHc
Q 011145 73 VDHYHRYKEDIDLIAKLGFDAYRFS----------------------ISWSRIFPDGLGTKINMEGITFYNNIIDALLQK 130 (492)
Q Consensus 73 ~d~y~ry~eDi~l~~~lG~~~~R~s----------------------i~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~ 130 (492)
.+---.-+.=|+||++||.++..|. + | +||.| | ++ ++.+..++..++++
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG-G--Id---l~Nf~~I~~i~lda 201 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG-G--ID---LDNFEEIVQIALDA 201 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC-C--cc---HHhHHHHHHHHHHc
Confidence 3344566788999999999998852 3 3 68887 5 88 78889999999999
Q ss_pred CCcceEEeccCCcchhhhhhcCCCCCHHHHHHH
Q 011145 131 GIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYF 163 (492)
Q Consensus 131 gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f 163 (492)
|++-++-=. |+. - .++--|-+.++-+...
T Consensus 202 Gv~kviPHI-Yss--i-IDk~tG~TrpedV~~l 230 (236)
T TIGR03581 202 GVEKVIPHV-YSS--I-IDKETGNTRVEDVKQL 230 (236)
T ss_pred CCCeecccc-cee--c-cccccCCCCHHHHHHH
Confidence 998664211 111 1 2333566666555443
No 55
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=70.87 E-value=72 Score=34.04 Aligned_cols=86 Identities=20% Similarity=0.359 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCeeee-------------------------cccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcc
Q 011145 80 KEDIDLIAKLGFDAYRF-------------------------SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP 134 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~-------------------------si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p 134 (492)
++=++++|+|.+...|+ .+.|-..|+.+.| . .++++.|...|.+|
T Consensus 52 kDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G-------t---~EF~~~~e~iGaep 121 (501)
T COG3534 52 KDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG-------T---HEFMDWCELIGAEP 121 (501)
T ss_pred HHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc-------H---HHHHHHHHHhCCce
Confidence 44468999999999985 2334333333322 2 58999999999999
Q ss_pred eEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHH--------HHHHhCC----CccEEEEccCc
Q 011145 135 YVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT--------CFASFGD----RVKNWITINEP 187 (492)
Q Consensus 135 ~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~--------~~~~~gd----~v~~w~t~NEp 187 (492)
++.+.= | -...+....|.+||.. .=...|. .|++|.+=||-
T Consensus 122 ~~avN~-----------G-srgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 122 YIAVNL-----------G-SRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred EEEEec-----------C-CccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 999851 2 1334566667777653 2233343 69999999995
No 56
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=70.68 E-value=9 Score=31.08 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=14.3
Q ss_pred HHHHhCC--CccEEEEccC-cc
Q 011145 170 CFASFGD--RVKNWITINE-PL 188 (492)
Q Consensus 170 ~~~~~gd--~v~~w~t~NE-p~ 188 (492)
++++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677885 8999999999 66
No 57
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=68.74 E-value=35 Score=34.99 Aligned_cols=109 Identities=18% Similarity=0.352 Sum_probs=57.8
Q ss_pred hhchHHHHHHHHHcCCCeee---------------ec---------------ccccccccCC--CCCCCCh----hHHHH
Q 011145 76 YHRYKEDIDLIAKLGFDAYR---------------FS---------------ISWSRIFPDG--LGTKINM----EGITF 119 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R---------------~s---------------i~Wsri~P~~--~g~~~n~----~g~~~ 119 (492)
|.||++.|+-|+=-|||..= |+ +.|.|.---. .| .+.. +-.+.
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgG-PLp~~w~~~q~~L 96 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGG-PLPQSWIDQQAEL 96 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT-----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCC-CCCHHHHHHHHHH
Confidence 67899999999999998432 11 2344432111 02 2222 22344
Q ss_pred HHHHHHHHHHcCCcceEEeccCCcchhhhhhc--------CC--------CCCHHHHHHHHHHHH----HHHHHhCCCcc
Q 011145 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GG--------WLNKEIVKYFEIYAD----TCFASFGDRVK 179 (492)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------gg--------~~~~~~~~~f~~ya~----~~~~~~gd~v~ 179 (492)
=+++++.+++-||+|++--+---.|..+.+++ |. |+.| .-..|.+.++ .-.+.|| .-+
T Consensus 97 q~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~ 174 (333)
T PF05089_consen 97 QKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDH 174 (333)
T ss_dssp HHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----S
T ss_pred HHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCc
Confidence 57899999999999999888777888887664 22 2332 2245555554 4556788 445
Q ss_pred EEE--EccCc
Q 011145 180 NWI--TINEP 187 (492)
Q Consensus 180 ~w~--t~NEp 187 (492)
++. +|||-
T Consensus 175 ~Y~~D~FnE~ 184 (333)
T PF05089_consen 175 IYAADPFNEG 184 (333)
T ss_dssp EEE--TTTTS
T ss_pred eeCCCccCCC
Confidence 555 78884
No 58
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=65.15 E-value=17 Score=36.40 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=61.4
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCC
Q 011145 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~ 156 (492)
+-+.|++++++.|++.++++++=|...-... + .--++.++...++|+.+++.|+++.+++-+|+.|.-
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~-~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r---------- 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR-KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMR---------- 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC-cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCc----------
Confidence 3466999999999999999986555544321 3 234667889999999999999999999988776641
Q ss_pred HHHHHHHHHHHHHHHH
Q 011145 157 KEIVKYFEIYADTCFA 172 (492)
Q Consensus 157 ~~~~~~f~~ya~~~~~ 172 (492)
..++.+.++++.+.+
T Consensus 144 -~~~~~~~~~~~~~~~ 158 (280)
T cd07945 144 -DSPDYVFQLVDFLSD 158 (280)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 124566677777654
No 59
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=63.09 E-value=16 Score=38.01 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=56.1
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC---CCCCChhHHHHHHHHHHHHHHcCCcce-EEeccCCcchhhhhhcCCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGL---GTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGW 154 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~---g~~~n~~g~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~ 154 (492)
=++.++.|+++|++ |+||.-..+-++-- |...+ .+-+.+.|+.+++.|+..+ +.| =+++|.
T Consensus 98 t~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg--------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIHT---FEEFLENYKLARKLGFNNINVDL-MFGLPN--------- 162 (374)
T ss_pred CHHHHHHHHHcCCC--EEEEECccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEe-ecCCCC---------
Confidence 46889999999999 55554444433211 31223 4566788999999999744 444 346664
Q ss_pred CCHHHHHHHHHHHHHHHHHhC-CCccEEEEccCcccc
Q 011145 155 LNKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQT 190 (492)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~~~ 190 (492)
++.+.|.+-.+.+.+ ++ +.|..+...-+|+..
T Consensus 163 ---qt~e~~~~~l~~~~~-l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 ---QTLEDWKETLEKVVE-LNPEHISCYSLIIEEGTP 195 (374)
T ss_pred ---CCHHHHHHHHHHHHh-cCCCEEEEeccEecCCCH
Confidence 234555555555554 34 455555544577643
No 60
>PLN02361 alpha-amylase
Probab=60.62 E-value=20 Score=37.89 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=46.4
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCC----CCCChh--HHHHHHHHHHHHHHcCCcceEEec
Q 011145 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 74 d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g----~~~n~~--g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.+|....+-++-|++||++++=++-......+.|-. ..+|.. ..+=++++|++|.++||++|+.+.
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 478999999999999999999887544333332210 011111 134578999999999999999753
No 61
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=59.43 E-value=24 Score=36.57 Aligned_cols=84 Identities=13% Similarity=0.024 Sum_probs=62.1
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEEecc-CCcchhhhhhcCCCCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWLN 156 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~ 156 (492)
=.+|++++.++|+..+.+.++=|...-... + .=-++.++.+.++|+.++++|+++.+++.. |+.|. .|-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNIN-CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC-
Confidence 589999999999999999987666554431 3 334677899999999999999999888764 55543 2222
Q ss_pred HHHHHHHHHHHHHHHH
Q 011145 157 KEIVKYFEIYADTCFA 172 (492)
Q Consensus 157 ~~~~~~f~~ya~~~~~ 172 (492)
.++.+.++++.+.+
T Consensus 195 --~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 --PPSKVAYVAKELYD 208 (347)
T ss_pred --CHHHHHHHHHHHHH
Confidence 35667777777655
No 62
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=58.85 E-value=39 Score=34.34 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCC-eeeeccc-c-cccc-cC-CCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCC
Q 011145 80 KEDIDLIAKLGFD-AYRFSIS-W-SRIF-PD-GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (492)
Q Consensus 80 ~eDi~l~~~lG~~-~~R~si~-W-sri~-P~-~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~ 154 (492)
+|.+++|+++|++ .+=++++ - .++. .. ..| .+ .+-+.+.++.++++||.+.+.+. +++|..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg--~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~~-------- 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG--ST---FEDFIRAAELARKYGAGVKAYLL-FKPPFL-------- 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC--CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCCC--------
Confidence 7899999999988 4555552 1 1122 11 112 23 45677899999999999776654 345521
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccccccccccccccCC
Q 011145 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAP 202 (492)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~p 202 (492)
...++++.+.+.++.+.. +++.|+...+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 123678888888887765 45778777766666654333345566655
No 63
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=58.06 E-value=16 Score=36.16 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.+|++++.+.|++.+|+.++=|...-... + .=-++.++...+++..+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~-~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHG-KSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 67999999999999999886554433321 2 22256688999999999999999999885
No 64
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=57.68 E-value=2.9e+02 Score=30.18 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCCCEEEeecCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeccccc-cc---cccC
Q 011145 373 VLNYIAKTYNNPPIYVTENGMDDEENDSSPLHEMLDDKLRVRYFKGYLSAVAQAIKDGADVRGYFVWSLL-DN---FEWA 448 (492)
Q Consensus 373 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~~l~~~~~Ai~dGv~v~GY~~WSl~-Dn---~EW~ 448 (492)
.|..++++|+.-.|+-||...+.. .. +....+-.-.|. ..+...+...+..| +.||..|-|+ |. --|.
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~-~~--~~~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~ 390 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSW-NW--DTSVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWV 390 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-S-TT--S-SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT
T ss_pred HHHHHHHHCCCcEEEeeccccCCC-Cc--ccccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCccc
Confidence 567788999877799999876653 11 000001011232 23344455566666 5899999984 42 1233
Q ss_pred CCCCCccceEEEeCCCCccceecchHHHHHHHHh
Q 011145 449 QGYTKRFGLVYVDYKNGLVRHPKSSAYWFMRFLK 482 (492)
Q Consensus 449 ~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~~i~ 482 (492)
.++.. ..+-||-++ .+-+..+.++.++++-+
T Consensus 391 ~n~~d--~~iivd~~~-~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 391 GNFCD--APIIVDSDT-GEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp ---B----SEEEEGGG-TEEEE-HHHHHHHHHHT
T ss_pred CCCCC--ceeEEEcCC-CeEEEcHHHHHHHHHhc
Confidence 33322 335578766 55556677888777654
No 65
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=56.78 E-value=21 Score=35.06 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCC------CCC--hhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGT------KIN--MEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~------~~n--~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.+-|+-+|+|||+++-++--+..-. ...|. .+| .-..+=+++||++|.++||++|+.+.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999999885443110 11120 111 11356679999999999999999875
No 66
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=56.41 E-value=25 Score=36.54 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=47.5
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.++||+++.+.|++.+|++++-|.+.-... + .-.++.++...+.|+.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK-KSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 489999999999999999988777654321 2 22345678889999999999999888774
No 67
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=55.99 E-value=32 Score=37.02 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=53.3
Q ss_pred hhhchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhh
Q 011145 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (492)
Q Consensus 75 ~y~ry~eD-----i~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 149 (492)
.|..|.+| ++++++.|++.+|+.-. .|. ++-....|+.+++.|....++++|=+.|.
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~------------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~---- 159 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDA------------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSPV---- 159 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEccc------------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCc----
Confidence 47788889 99999999999998643 221 45557788899999999888988866662
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q 011145 150 SMGGWLNKEIVKYFEIYADTCFA 172 (492)
Q Consensus 150 ~~gg~~~~~~~~~f~~ya~~~~~ 172 (492)
.+++.+.+.|+.+.+
T Consensus 160 --------~t~~y~~~~a~~l~~ 174 (468)
T PRK12581 160 --------HTLNYYLSLVKELVE 174 (468)
T ss_pred --------CcHHHHHHHHHHHHH
Confidence 245566666666553
No 68
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=55.12 E-value=14 Score=35.02 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=39.1
Q ss_pred cCCccccCCCCCcccc---hhhchHHHHHHHHHcCCCeeeec-cc-c-----------------cccccCCCCCCCChhH
Q 011145 59 TEGKIIDKSNGDVAVD---HYHRYKEDIDLIAKLGFDAYRFS-IS-W-----------------SRIFPDGLGTKINMEG 116 (492)
Q Consensus 59 ~~~~~~~~~~~~~a~d---~y~ry~eDi~l~~~lG~~~~R~s-i~-W-----------------sri~P~~~g~~~n~~g 116 (492)
++|.++ -++|..+++ -.-.-+.=|+||++||.++..|- +. = =.+||.| | +|
T Consensus 115 ~~G~Vk-IsTGp~Ss~~~~~~V~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTG-G--Id--- 187 (218)
T PF07071_consen 115 TPGKVK-ISTGPLSSQGPDAIVPVETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTG-G--ID--- 187 (218)
T ss_dssp STTEEE----STTHHGSS--EEEHHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBS-S-------
T ss_pred CceEEE-eccCCccccCCCccccHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcC-C--cC---
Confidence 345443 345544333 33456788999999999999973 32 0 0137776 4 77
Q ss_pred HHHHHHHHHHHHHcCCcceE
Q 011145 117 ITFYNNIIDALLQKGIQPYV 136 (492)
Q Consensus 117 ~~~y~~~i~~l~~~gi~p~v 136 (492)
++.+..++..|+++|++-++
T Consensus 188 l~N~~~I~~i~l~aGv~~vi 207 (218)
T PF07071_consen 188 LDNFEEIVKICLDAGVEKVI 207 (218)
T ss_dssp TTTHHHHHHHHHHTT-S-B-
T ss_pred HHHHHHHHHHHHHcCCCeec
Confidence 67778888888888887554
No 69
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=54.55 E-value=67 Score=32.35 Aligned_cols=107 Identities=15% Similarity=0.223 Sum_probs=68.5
Q ss_pred chHHHHHHHHHcCC--CeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccC---Ccchhhhhh--
Q 011145 78 RYKEDIDLIAKLGF--DAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES-- 150 (492)
Q Consensus 78 ry~eDi~l~~~lG~--~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~-- 150 (492)
...+-++.+++.|+ +++=+.+.|.+-.-.+ .-.+|++-+---..+|+.|+++|+++++.+.-+ +.|..-+.+
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~-~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~ 103 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWC-DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEK 103 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCcce-eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHC
Confidence 35677888999994 4566777887533211 124565555556899999999999988876533 223221110
Q ss_pred -------------------cCC---CCCHHHHHHHHHHHHHHHHHhCCCcc-EEEEccCcc
Q 011145 151 -------------------MGG---WLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPL 188 (492)
Q Consensus 151 -------------------~gg---~~~~~~~~~f~~ya~~~~~~~gd~v~-~w~t~NEp~ 188 (492)
.++ ++||++.+.|.+..+.+.+ .| |+ +|+=+||+.
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 104 GYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred CeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 011 7889999999888776554 33 43 555688863
No 70
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.90 E-value=31 Score=33.58 Aligned_cols=64 Identities=19% Similarity=0.060 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcc
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (492)
+++++++++.|+..+|++++-+.+.-... + .=.+..++...+.|+.+++.|+++.+.+....-|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLN-KSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 89999999999999999998663211110 1 1112246778899999999999999999654443
No 71
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=53.63 E-value=17 Score=35.74 Aligned_cols=58 Identities=26% Similarity=0.256 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~-~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
.+|++++.+.|++.+|+.++.|.+.-.. .+ .=.+++++-..++++.++++|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLG-KDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999887764332 12 2235668889999999999999877555
No 72
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.78 E-value=77 Score=31.97 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=72.1
Q ss_pred chHHHHHHHHHcCCC--eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCc---chhhh----
Q 011145 78 RYKEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLH---- 148 (492)
Q Consensus 78 ry~eDi~l~~~lG~~--~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~---- 148 (492)
...+-++.+++.|+. ++=+.+.|..-. + ...+|.+-+---.++|+.|+++|+++++.+.-+-. +..-+
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g-~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~ 107 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCY--G-DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEK 107 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccC--C-ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhC
Confidence 346667888899965 666666785432 2 22556555555689999999999998887653211 11111
Q ss_pred -----hhcC----------C------CCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCcc
Q 011145 149 -----ESMG----------G------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (492)
Q Consensus 149 -----~~~g----------g------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 188 (492)
+..| | ++||++++.|.+..+.++...|= --+|+=+|||.
T Consensus 108 g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 108 GYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred CeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 1111 1 78999999999999888877643 35788899997
No 73
>PLN00196 alpha-amylase; Provisional
Probab=52.63 E-value=26 Score=37.35 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=46.0
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCC----CCCCh---hHHHHHHHHHHHHHHcCCcceEEe--ccC
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINM---EGITFYNNIIDALLQKGIQPYVTL--YHW 141 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g----~~~n~---~g~~~y~~~i~~l~~~gi~p~vtL--~H~ 141 (492)
+|....+.+.-+++||++++=++-......+.|-. ..+|. -..+=++++|++|.++||++|+.+ .|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 46778899999999999999988654433222210 01221 012457999999999999999974 453
No 74
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=51.86 E-value=40 Score=36.38 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=50.3
Q ss_pred hhhchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhh
Q 011145 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (492)
Q Consensus 75 ~y~ry~eD-----i~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 149 (492)
.|..|.+| |+++.+.|++.+|+.++-+. ++-....|+.++++|+.+..++.+-..|.
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~---- 149 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHGAHVQGAISYTVSPV---- 149 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCCCEEEEEEEeccCCC----
Confidence 46668888 99999999999999876443 23346677888899998888887644451
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q 011145 150 SMGGWLNKEIVKYFEIYADTCFA 172 (492)
Q Consensus 150 ~~gg~~~~~~~~~f~~ya~~~~~ 172 (492)
...+.+.+.|+.+.+
T Consensus 150 --------~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 150 --------HTLEYYLEFARELVD 164 (467)
T ss_pred --------CCHHHHHHHHHHHHH
Confidence 225556666665544
No 75
>PRK05402 glycogen branching enzyme; Provisional
Probab=51.38 E-value=90 Score=35.73 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=59.7
Q ss_pred hhchHHHH-HHHHHcCCCeeeec-c-c------c-------cccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 76 YHRYKEDI-DLIAKLGFDAYRFS-I-S------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 76 y~ry~eDi-~l~~~lG~~~~R~s-i-~------W-------sri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
|.-..+.+ +-+|+||++++=+. | + | -.|.|.- | ..+-.+++|++|.++||++|+.+.
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-G------t~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-G------TPDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 33334453 77899999999875 3 1 1 1122222 3 144578999999999999999854
Q ss_pred --cCCc-----------chhhhh-----hcC-------CCCCHHHHHHHHHHHHHHHHHhC
Q 011145 140 --HWDL-----------PLHLHE-----SMG-------GWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 140 --H~~~-----------P~~l~~-----~~g-------g~~~~~~~~~f~~ya~~~~~~~g 175 (492)
|+.. |.+... .+. .+.++++.+.+.+-++.-+++||
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 5422 111110 001 24578999999999998888886
No 76
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=51.25 E-value=58 Score=34.23 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=40.3
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
..|++||++++++||+.|=+.|- .. . .++ .+....+++++.+.|.+.++++
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d-~~~---~~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-D-SWQ---PDQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-C-ccc---HHHHHHHHHHHHhcCCEEEEEe
Confidence 35899999999999999998886 11 2 344 3566788899999998888877
No 77
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=51.20 E-value=43 Score=37.30 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=35.0
Q ss_pred hhhchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEecc
Q 011145 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (492)
Q Consensus 75 ~y~ry~eD-----i~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H 140 (492)
.|.+|.+| +++.++.|++.+|++.+.+.+ +-....|+.++++|....+++++
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 46666666 999999999999998654332 23345566666666665555544
No 78
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=51.20 E-value=36 Score=33.85 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCeeeeccccc-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Ws-ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
-+|.++.||++|++.+-++++-+ .+.+.-.+ ..+ ++.+.+.++.++++||.+.+++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~-~~s---~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIIS-THT---YDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccC-CCC---HHHHHHHHHHHHHcCCEEEEeE
Confidence 38999999999999999998821 12332111 223 6777889999999999865443
No 79
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=51.13 E-value=48 Score=35.53 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=61.9
Q ss_pred hHHHHHHHHHcCCCeeeecc-cccc-cccCCCCCCCChhHHHHHHHHHHHHHHcC-CcceEEeccCCcchhhhhhcCCCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSI-SWSR-IFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWL 155 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si-~Wsr-i~P~~~g~~~n~~g~~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~gg~~ 155 (492)
=+|.+++|+++|+|-+-+++ +-+. +...- |...+ .+-..+.|+.+++.| +.+.+.|. +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~~---~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------- 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKDD---REEVLARLEELVARDRAAVVCDLI-FGLPG---------- 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCCC---HHHHHHHHHHHHhCCCCcEEEEEE-eeCCC----------
Confidence 37889999999999777776 3221 11111 21222 344567888999999 55555654 46663
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccEEEEccCccccccccccccccC
Q 011145 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (492)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~ 201 (492)
++.+.|.+=.+.+.+-=-+.|..+...-+|+......+..|.++
T Consensus 227 --qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 --QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 22344444444444432367888888888876433223334444
No 80
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=50.25 E-value=89 Score=34.44 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=40.0
Q ss_pred hhchHHHHHHHHHcCCCeeeec-c-c------c-------cccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFS-I-S------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~s-i-~------W-------sri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
+.-..+-|+-+|+||++++-+. | + | -.+.|.- | ..+=++++|++|.++||++|+.+.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G------~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-G------GPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-C------CHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4445667899999999999875 3 1 2 1122221 2 245579999999999999999854
No 81
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=48.69 E-value=94 Score=31.95 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCcceEEeccCCc-chhhhhh--cCCCCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCcccccc
Q 011145 120 YNNIIDALLQKGIQPYVTLYHWDL-PLHLHES--MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAV 192 (492)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~~~-P~~l~~~--~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~ 192 (492)
-+++++.|.+.|++.++.+.-+-. -..+... +=-|+||++.+.|.+..+.+.+ .| -.-+|+=+|||.+++.
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~ 139 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccC
Confidence 367999999999987765532100 0000000 1137889999988777655443 23 2358999999997754
No 82
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=48.57 E-value=56 Score=32.80 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=61.7
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHHcCCcceEEecc-CCcchhhhhhcCCCC
Q 011145 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWL 155 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~Wsri~P~~-~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~ 155 (492)
+-.+|+++..+.|++.+++.++=|...-.. .+ .=-++.++...+.|+.++++|+++.+++.. |+.|. .|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~-~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNIN-CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC
Confidence 358999999999999999998655443222 13 234466888999999999999999888774 55552 3333
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 011145 156 NKEIVKYFEIYADTCFAS 173 (492)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~ 173 (492)
..+.+.++++.+.+.
T Consensus 153 ---~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 ---PPEAVADVAERLFAL 167 (287)
T ss_pred ---CHHHHHHHHHHHHHc
Confidence 356777777777653
No 83
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=47.91 E-value=1e+02 Score=31.36 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCcceEEeccC---Ccchhhhhh---------c---------C--C---CCCHHHHHHHHH
Q 011145 112 INMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES---------M---------G--G---WLNKEIVKYFEI 165 (492)
Q Consensus 112 ~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~---------~---------g--g---~~~~~~~~~f~~ 165 (492)
+|.+-+---.++|+.|+++|+++++.+.-+ +.+.+-+-+ . | + |+||++++.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 454444445789999999999988866432 122111100 0 1 1 788999998877
Q ss_pred HHHHHHHHhCCCccEEEEccCccccc
Q 011145 166 YADTCFASFGDRVKNWITINEPLQTA 191 (492)
Q Consensus 166 ya~~~~~~~gd~v~~w~t~NEp~~~~ 191 (492)
..+..+...| ---+|+=+|||..+.
T Consensus 140 ~~~~~~~~~G-vdg~w~D~~Ep~~~~ 164 (319)
T cd06591 140 QLKKNYYDKG-VDAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHhhcCC-CcEEEecCCCCCccC
Confidence 6655444443 246888999998653
No 84
>PRK12313 glycogen branching enzyme; Provisional
Probab=47.65 E-value=1.1e+02 Score=34.35 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=60.3
Q ss_pred hhchHHH-HHHHHHcCCCeeeec-c-------cc-------cccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 76 YHRYKED-IDLIAKLGFDAYRFS-I-------SW-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 76 y~ry~eD-i~l~~~lG~~~~R~s-i-------~W-------sri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
|.-..+. |+-+|+||++++=+. | +| -.|.|.- | ..+=++++|++|.++||++|+.+.
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-G------t~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-G------TPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4444566 489999999999865 3 12 1122222 3 134579999999999999999854
Q ss_pred --cCCcch----hhh--------hh----cC-------CCCCHHHHHHHHHHHHHHHHHhC
Q 011145 140 --HWDLPL----HLH--------ES----MG-------GWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 140 --H~~~P~----~l~--------~~----~g-------g~~~~~~~~~f~~ya~~~~~~~g 175 (492)
|..... ++. +. +. .+.++++.+.+.+-++.-++.||
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 543111 110 00 01 23468899999999999888886
No 85
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=47.26 E-value=75 Score=32.09 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=51.8
Q ss_pred HHHHHcCCCeeeeccc--ccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHH
Q 011145 84 DLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (492)
Q Consensus 84 ~l~~~lG~~~~R~si~--Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~ 161 (492)
..+++.|++.+=+++- -..-.|.-.| .............|..|+++|++++|++-.+.-.... .+...++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g-~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~-------~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGG-SYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLA-------TSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCC-CCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCccc-------cCcccHH
Confidence 5677889998887642 1222222101 1110012344678999999999999988544332110 1446788
Q ss_pred HHHHHHHHHHHHhC
Q 011145 162 YFEIYADTCFASFG 175 (492)
Q Consensus 162 ~f~~ya~~~~~~~g 175 (492)
.|++....++++|+
T Consensus 91 ~~~~a~~~~i~~y~ 104 (294)
T cd06543 91 QLAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888889887
No 86
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=46.64 E-value=97 Score=31.79 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCcceEEeccCCc-----chhhhhh---------c----------C-----CCCCHHHHHHHHHHHHHH
Q 011145 120 YNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES---------M----------G-----GWLNKEIVKYFEIYADTC 170 (492)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~---------~----------g-----g~~~~~~~~~f~~ya~~~ 170 (492)
-..+|+.|+++|++.++.+.-+-. |..-+.. - | -+.||++++.|.+..+.+
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 367999999999998887764422 2221110 0 1 278999999999988877
Q ss_pred HHHhC-CCccEEEEccCccccc
Q 011145 171 FASFG-DRVKNWITINEPLQTA 191 (492)
Q Consensus 171 ~~~~g-d~v~~w~t~NEp~~~~ 191 (492)
....+ +-+-.|+=+|||.++.
T Consensus 146 ~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 146 KYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hhcccCCCceEEeccCCccccC
Confidence 65433 3457889999998654
No 87
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=45.73 E-value=1.1e+02 Score=31.42 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=63.7
Q ss_pred hHHHHHHHHHcCCCe--eeecccccccccCCCCCCCChhHHHHH--HHHHHHHHHcCCcceEEeccCCcc--------hh
Q 011145 79 YKEDIDLIAKLGFDA--YRFSISWSRIFPDGLGTKINMEGITFY--NNIIDALLQKGIQPYVTLYHWDLP--------LH 146 (492)
Q Consensus 79 y~eDi~l~~~lG~~~--~R~si~Wsri~P~~~g~~~n~~g~~~y--~~~i~~l~~~gi~p~vtL~H~~~P--------~~ 146 (492)
..+-++.+++.|+.. +=+.+.|..-. + ...+|++-+--- .++|+.|+++|++.++.+.-+-.+ .+
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~~--~-~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~ 102 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDRR--R-DFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPY 102 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccCc--c-ceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHH
Confidence 345555666666553 33344554221 1 113333333333 789999999999988887654333 12
Q ss_pred hhh-h------------------cC-----CCCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 147 LHE-S------------------MG-----GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 147 l~~-~------------------~g-----g~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
-+. + .| -++||++++.|.+..+.++..+|- .-+|+=+|||..
T Consensus 103 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 103 DRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 110 0 01 288999999998877776665432 367888999964
No 88
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=45.68 E-value=54 Score=32.66 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHHcCCcceEEecc-CCcchhhhhhcCCCCCH
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWLNK 157 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~-~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~~ 157 (492)
.+|++++.+.|++.+++.++=|...-.. .+ .=-++.++...+.++.++++|+++.+++.. |+.|. +|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~-- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNIN-CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV-- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC--
Confidence 7899999999999999998665543222 12 223566888999999999999999988873 55552 2222
Q ss_pred HHHHHHHHHHHHHHH
Q 011145 158 EIVKYFEIYADTCFA 172 (492)
Q Consensus 158 ~~~~~f~~ya~~~~~ 172 (492)
..+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35667777777655
No 89
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=45.59 E-value=86 Score=35.92 Aligned_cols=105 Identities=18% Similarity=0.294 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCC--eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec---cCCcc----------
Q 011145 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLP---------- 144 (492)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~---H~~~P---------- 144 (492)
++-++.+.++|+. ..=..|.|-.-..+ -.+|..+.-...++++.|.++|++.++++. +-+..
T Consensus 314 ~dvv~~~~~agiPld~~~~DiDyMd~ykD---FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~ 390 (805)
T KOG1065|consen 314 RDVVENYRAAGIPLDVIVIDIDYMDGYKD---FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAK 390 (805)
T ss_pred HHHHHHHHHcCCCcceeeeehhhhhcccc---eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhh
Confidence 3456778888887 43334444322222 256777777788999999999999999886 22222
Q ss_pred -----------hhhhhhcCC------CCCHHHHHHHHHHHHHHHHHhCCCc---cEEEEccCccccc
Q 011145 145 -----------LHLHESMGG------WLNKEIVKYFEIYADTCFASFGDRV---KNWITINEPLQTA 191 (492)
Q Consensus 145 -----------~~l~~~~gg------~~~~~~~~~f~~ya~~~~~~~gd~v---~~w~t~NEp~~~~ 191 (492)
.-+.+-.-| ++|+++++++.+ .+++|.+.| .+|+-+|||.-++
T Consensus 391 ~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 391 DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred ceeeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCC
Confidence 101110112 788877777665 556888877 4899999997655
No 90
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=44.91 E-value=50 Score=35.62 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=42.8
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccc--------ccCCC---CC-----CCChh--HHHHHHHHHHHHHHcCCcce
Q 011145 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRI--------FPDGL---GT-----KINME--GITFYNNIIDALLQKGIQPY 135 (492)
Q Consensus 74 d~y~ry~eDi~l~~~lG~~~~R~si~Wsri--------~P~~~---g~-----~~n~~--g~~~y~~~i~~l~~~gi~p~ 135 (492)
+.|.-..+-++-+++||++++=++-...-. .|..- +. .+|.. ..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 445556777899999999999887533322 11100 00 11111 23457999999999999999
Q ss_pred EEec
Q 011145 136 VTLY 139 (492)
Q Consensus 136 vtL~ 139 (492)
+.+.
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9854
No 91
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.83 E-value=1.4e+02 Score=30.29 Aligned_cols=109 Identities=15% Similarity=0.207 Sum_probs=65.3
Q ss_pred hHHHHHHHHHcCCC--eeeecccccccccCC--C-CCCCChhHHHHHHHHHHHHHHcCCcceEEeccC---Ccchhhhhh
Q 011145 79 YKEDIDLIAKLGFD--AYRFSISWSRIFPDG--L-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES 150 (492)
Q Consensus 79 y~eDi~l~~~lG~~--~~R~si~Wsri~P~~--~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~ 150 (492)
..+-++.+++.|+. ++=+.+.|....... . ...+|.+-+---+++|+.|+++|++.++.+.-+ +.|..-+..
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 34555666666654 455555674432211 0 113444444445789999999999998887644 334321100
Q ss_pred ---c-------------------C---CCCCHHHHHHHHHHHHHHHHHhCCCc-cEEEEccCcccc
Q 011145 151 ---M-------------------G---GWLNKEIVKYFEIYADTCFASFGDRV-KNWITINEPLQT 190 (492)
Q Consensus 151 ---~-------------------g---g~~~~~~~~~f~~ya~~~~~~~gd~v-~~w~t~NEp~~~ 190 (492)
+ + -++||++.+.|.+..+.+ +..-| -+|+=+|||..+
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 1 267999999998877765 32334 468889999754
No 92
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=43.97 E-value=54 Score=31.72 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=42.0
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCC-CCCChhHHHHHHHHHHHHHHcCCcceEE-eccCCcc
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVT-LYHWDLP 144 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g-~~~n~~g~~~y~~~i~~l~~~gi~p~vt-L~H~~~P 144 (492)
+-.++++-|+++++||.+.+++..... |.... .+..+..++..+++.+.+.+.||...+= +.|++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 446677889999999999998654321 21100 0122334466788888888899886663 3444444
No 93
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=43.87 E-value=67 Score=33.62 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~-~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
++||+.+.+.|++.+|++++-|.+.-.. .+ .--++.++...+.|+.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 8899999999999999999877664332 13 2345678889999999999999988764
No 94
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.90 E-value=76 Score=34.08 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcc
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (492)
++||+.+.+.|++.+|+.++-+.+ .-....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV--------------RNLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 567799999999999998764433 124568899999999988888765545
No 95
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=42.67 E-value=63 Score=33.61 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHH
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE 158 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 158 (492)
++||+.+.+.|++.+|+.++-|.+.-... + .=.++.++...+.|+.++++|+++.+++- + ++..+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~i~~ak~~g~~v~~~~e---------d--~~r~~-- 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLR-KDRAWVLERLARLVSFARDRGLFVSVGGE---------D--ASRAD-- 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCEEEEeec---------C--CCCCC--
Confidence 89999999999999999998776543321 2 22345688889999999999998776542 1 22233
Q ss_pred HHHHHHHHHHHHHHHhC
Q 011145 159 IVKYFEIYADTCFASFG 175 (492)
Q Consensus 159 ~~~~f~~ya~~~~~~~g 175 (492)
.+.+.++++.+.+ .|
T Consensus 141 -~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 -PDFLVELAEVAAE-AG 155 (365)
T ss_pred -HHHHHHHHHHHHH-cC
Confidence 5556666666554 44
No 96
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.48 E-value=1.1e+02 Score=30.45 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHH
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE 158 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 158 (492)
-++|+++..+.|++.+|+++.-+. ++.....++.+++.|+++.+++.--+ ++ +.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~~---~~ 146 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG---------SP---VH 146 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC---------CC---CC
Confidence 488999999999999999875432 45567899999999999887663111 11 22
Q ss_pred HHHHHHHHHHHHHH
Q 011145 159 IVKYFEIYADTCFA 172 (492)
Q Consensus 159 ~~~~f~~ya~~~~~ 172 (492)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (275)
T cd07937 147 TLEYYVKLAKELED 160 (275)
T ss_pred CHHHHHHHHHHHHH
Confidence 34556666666655
No 97
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.04 E-value=1.3e+02 Score=30.81 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=63.7
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHH
Q 011145 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKY 162 (492)
Q Consensus 83 i~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~ 162 (492)
.+.+|++|.++..|=+=|. |++.. .+|..-.++.+++.++|++++|--++=+..++.+. .+. .+.++...
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~-~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~--~d~----~~~~yak~ 180 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPD-EINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI--ADN----GSVEYAKV 180 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc--ccc----ccHHHHhh
Confidence 6889999999999988876 66533 68888899999999999999999998888665443 221 12233333
Q ss_pred HHHHHHHHHHHhCC---CccEEEE
Q 011145 163 FEIYADTCFASFGD---RVKNWIT 183 (492)
Q Consensus 163 f~~ya~~~~~~~gd---~v~~w~t 183 (492)
.-+.+-..++.|++ .|+.|=+
T Consensus 181 kP~~V~~a~kefs~~~~gvDVlKv 204 (324)
T PRK12399 181 KPHKVNEAMKVFSKPRFGVDVLKV 204 (324)
T ss_pred ChHHHHHHHHHhccCCCCCcEEEE
Confidence 33444446677765 4555543
No 98
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.23 E-value=1.3e+02 Score=30.76 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHH
Q 011145 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (492)
Q Consensus 82 Di~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~ 161 (492)
+.+.+|++|.++..|=+=|. |++.. .+|..-.++.+++.++|++++|--++=+..++.+. .+. .+++...
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~--~d~----~~~eyak 181 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDE-EINDQKQAYIERIGSECTAEDIPFFLELLTYDERI--SDN----NSAAYAK 181 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc--ccc----ccHHHHh
Confidence 56889999999999988776 66533 68888899999999999999999999888765433 211 2333333
Q ss_pred HHHHHHHHHHHHhCC---CccEEE
Q 011145 162 YFEIYADTCFASFGD---RVKNWI 182 (492)
Q Consensus 162 ~f~~ya~~~~~~~gd---~v~~w~ 182 (492)
..-+.+-..++.|++ .|+.|=
T Consensus 182 ~kP~~V~~amkefs~~~~gvDVlK 205 (329)
T PRK04161 182 LKPHKVNGAMKVFSDKRFGVDVLK 205 (329)
T ss_pred hChHHHHHHHHHhccCCCCCcEEE
Confidence 333445556677775 455554
No 99
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=41.20 E-value=89 Score=30.95 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHH
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEI 159 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 159 (492)
.+|++...+.|++.+|+++..+ .++-..+.++.++++|+++.+++.+-.. ..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~~ 136 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------YS 136 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------CC
Confidence 5899999999999999987432 2667789999999999999999875211 23
Q ss_pred HHHHHHHHHHHHH
Q 011145 160 VKYFEIYADTCFA 172 (492)
Q Consensus 160 ~~~f~~ya~~~~~ 172 (492)
.+.+.++++.+.+
T Consensus 137 ~~~~~~~~~~~~~ 149 (266)
T cd07944 137 DEELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHHh
Confidence 5566777777654
No 100
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=40.94 E-value=1.1e+02 Score=31.63 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=54.4
Q ss_pred hHHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W-sri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~ 156 (492)
-++.+++|+++|++.+-+++. = .++...- +...+ .+-..+.|+.+++.|+..+-.-.=+++|..
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~---~~~~~~~i~~l~~~g~~~v~~dli~GlPgq---------- 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHN---EEDVYEAIANAKKAGFDNISIDLIYALPGQ---------- 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEeeecCCCCC----------
Confidence 478999999999996666652 1 2222221 21233 456678999999999975432223566642
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCccEEEEccCcccc
Q 011145 157 KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQT 190 (492)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~~~ 190 (492)
+.+.|.+=.+.+.+ ++ +.|..+...-+|...
T Consensus 165 --t~~~~~~~l~~~~~-l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 165 --TIEDFKESLAKALA-LDIPHYSAYSLILEPKTV 196 (377)
T ss_pred --CHHHHHHHHHHHHc-cCCCEEeeeceeecCCCh
Confidence 23344444444433 33 345444444566643
No 101
>PRK05474 xylose isomerase; Provisional
Probab=40.33 E-value=4.8e+02 Score=27.88 Aligned_cols=90 Identities=19% Similarity=0.310 Sum_probs=55.1
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHH----HHHHcCCc-ceEEeccCCcchhhhhhcCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIID----ALLQKGIQ-PYVTLYHWDLPLHLHESMGG 153 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~----~l~~~gi~-p~vtL~H~~~P~~l~~~~gg 153 (492)
.+.=++.|.+||+..|=|- =..|.|.+. ...+. .+..+++++ .+.+.||+ +++|..-|..|.... |+
T Consensus 81 ~d~afe~~~kLg~~~~~FH--D~D~~peg~--s~~E~-~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA 152 (437)
T PRK05474 81 ADAAFEFFTKLGVPYYCFH--DVDVAPEGA--SLKEY-NANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GA 152 (437)
T ss_pred HHHHHHHHHHhCCCeeccC--ccccCCCCC--CHHHH-HHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---Cc
Confidence 3444677999999998764 334788872 33322 233344444 45667888 466788899999864 99
Q ss_pred CCCHH--HHHHHHHHHHH---HHHHhCC
Q 011145 154 WLNKE--IVKYFEIYADT---CFASFGD 176 (492)
Q Consensus 154 ~~~~~--~~~~f~~ya~~---~~~~~gd 176 (492)
++||+ +...=++-++. +.+++|.
T Consensus 153 ~Tnpd~~Vra~A~~qvk~alD~~~eLGg 180 (437)
T PRK05474 153 ATNPDPDVFAYAAAQVKTALDATKRLGG 180 (437)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99963 33333333333 3455664
No 102
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=40.20 E-value=53 Score=37.25 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=40.0
Q ss_pred HHHHHHcCCCeeee----cccccccccCC-C----C------------CCCCh---hHHHHHHHHHHHHHHcCCcceEEe
Q 011145 83 IDLIAKLGFDAYRF----SISWSRIFPDG-L----G------------TKINM---EGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 83 i~l~~~lG~~~~R~----si~Wsri~P~~-~----g------------~~~n~---~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
|+-+|+|||+++.+ ++.+-+...+. . | +.-+. ..+.=++++|++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999995 34444444322 0 1 01122 246778999999999999999975
Q ss_pred c
Q 011145 139 Y 139 (492)
Q Consensus 139 ~ 139 (492)
.
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 4
No 103
>PLN02784 alpha-amylase
Probab=39.96 E-value=66 Score=37.27 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=46.1
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCC----CCCChh--HHHHHHHHHHHHHHcCCcceEEe
Q 011145 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 74 d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g----~~~n~~--g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
.+|....+.++-+++||++++=++-.-....+.|-. ..+|.. ..+-++.+|++|.++||++|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 468889999999999999999887544433332210 011111 13457999999999999999974
No 104
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=39.88 E-value=89 Score=32.12 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=59.7
Q ss_pred cccchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhh
Q 011145 71 VAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (492)
Q Consensus 71 ~a~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 150 (492)
+|.=||+ |+--+. ..+.|+..+|+. | | .+- .-+..+.+++.++++|+-.=+...|-.++.-+.++
T Consensus 76 VADIHFd-~~lAl~-a~~~g~dkiRIN-------P---G-Nig--~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~k 140 (346)
T TIGR00612 76 VADIHFD-YRLAAL-AMAKGVAKVRIN-------P---G-NIG--FRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEK 140 (346)
T ss_pred EEeeCCC-cHHHHH-HHHhccCeEEEC-------C---C-CCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHH
Confidence 3444554 343332 335677777753 3 4 232 14678999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 011145 151 MGGWLNKEIVKYFEIYADTCF 171 (492)
Q Consensus 151 ~gg~~~~~~~~~f~~ya~~~~ 171 (492)
||+-+....++--.++++.|-
T Consensus 141 yg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 141 YGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 877555566666666665543
No 105
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=38.53 E-value=1.8e+02 Score=29.52 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCC--eeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCc-----chhhhhh--
Q 011145 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES-- 150 (492)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~-- 150 (492)
.+-++.+++.++. ++=+.+.|.. ..+ ...+|++-+---.++|+.|.++|++.++.+.-+-. |...+..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~-~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~ 103 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMD--SYR-LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDK 103 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhC--CCC-ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHC
Confidence 3444555555554 3333444432 111 11344444444568999999999997776653321 2221100
Q ss_pred -----------------cC-----CCCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 151 -----------------MG-----GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 151 -----------------~g-----g~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
.| -|+||++++.|.+..+.+....| -.-+|+=+|||..
T Consensus 104 ~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~Ep~~ 163 (317)
T cd06600 104 GKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNEPSD 163 (317)
T ss_pred CEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCCCcc
Confidence 01 27899999999988877765443 2358889999864
No 106
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=38.42 E-value=74 Score=32.09 Aligned_cols=64 Identities=23% Similarity=0.495 Sum_probs=46.8
Q ss_pred chHHHHHHHHHcCCCeeeeccc----ccc---cccC------------CCCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 78 RYKEDIDLIAKLGFDAYRFSIS----WSR---IFPD------------GLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~----Wsr---i~P~------------~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
..++-|+.|+..++|.+.+-++ |+- ..|. ..| .+.++ =++++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~-~yT~~---di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGG-FYTYA---QLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCC-eECHH---HHHHHHHHHHHcCCEEEEec
Confidence 3677899999999999988876 522 1221 113 56644 45899999999999988877
Q ss_pred ccCCcchhhh
Q 011145 139 YHWDLPLHLH 148 (492)
Q Consensus 139 ~H~~~P~~l~ 148 (492)
|+|....
T Consensus 93 ---D~PGH~~ 99 (303)
T cd02742 93 ---DMPGHST 99 (303)
T ss_pred ---cchHHHH
Confidence 7887654
No 107
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=38.22 E-value=1.4e+02 Score=32.19 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcc
Q 011145 80 KEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-Ws-ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (492)
+|.+++|+++|++.+-++++ -+ ++.-.- +...+ .+.+.+.++.|+++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 57789999999998888773 22 111111 11223 45677899999999999888775 2455
No 108
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=38.12 E-value=59 Score=35.80 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=40.9
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCC------CCCCh--hHHHHHHHHHHHHHHcCCcceEEec
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g------~~~n~--~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.+.-..+-++-+++||++++=++--...-.-. .| ..+++ -..+-++++|++|.++||++|+.+.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34445677889999999998775322211000 01 01111 1245679999999999999999864
No 109
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=37.88 E-value=83 Score=36.24 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=63.2
Q ss_pred cCCCeeeeccc-ccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEecc---CCcchhhhhh---------c----
Q 011145 89 LGFDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH---WDLPLHLHES---------M---- 151 (492)
Q Consensus 89 lG~~~~R~si~-Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~---------~---- 151 (492)
+=+.++++.+. |.+ .-. .-.+|..-+---+.+|+.|.+.||+.++.+.. -+.|..-+.. -
T Consensus 294 IP~d~~~lD~~~~~~--~~~-~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG-DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--ccc-ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 45678999995 876 222 11344444444468999999999998887763 2333321111 0
Q ss_pred --------C---CCCCHHHHHHHHHHHHHHHHHhCC--CccEEEEccCccccccc
Q 011145 152 --------G---GWLNKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQTAVN 193 (492)
Q Consensus 152 --------g---g~~~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~~~~~ 193 (492)
+ -++||+++++|.+ .+.+.+-| -.-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~---~~~~~l~d~Gv~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWAS---DKKKNLLDLGVDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHH---HHHhHHHhcCccEEEccCCCCcccccc
Confidence 1 2889999999997 33333333 34688999999976543
No 110
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=37.64 E-value=64 Score=35.63 Aligned_cols=63 Identities=17% Similarity=0.332 Sum_probs=41.7
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCC-CCC------CCCh--hHHHHHHHHHHHHHHcCCcceEEec
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGT------KINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~-~g~------~~n~--~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
-+.-..+.++-+++||++++=++--+.. |.. .|. .+|+ -..+-++++|++|.++||++|+.+.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3445668899999999999987643311 211 010 0111 1245679999999999999999864
No 111
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=37.27 E-value=2.5e+02 Score=31.47 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=60.7
Q ss_pred hhchHHHH-HHHHHcCCCeeeec-ccccc--------------cccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 76 YHRYKEDI-DLIAKLGFDAYRFS-ISWSR--------------IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 76 y~ry~eDi-~l~~~lG~~~~R~s-i~Wsr--------------i~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
|.-..+.+ +-+|+||++++=+. |..+. +.|.- | ..+=++++|++|.++||++|+.+.
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-G------t~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-G------TPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 33344564 88999999999884 54321 11111 2 134578999999999999999865
Q ss_pred --cCC-----------cchhhhhh-----c---C----CCCCHHHHHHHHHHHHHHHHHhC
Q 011145 140 --HWD-----------LPLHLHES-----M---G----GWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 140 --H~~-----------~P~~l~~~-----~---g----g~~~~~~~~~f~~ya~~~~~~~g 175 (492)
|.. .|.+.... + | .+.++++.+.+.+-++.-++.|+
T Consensus 228 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 228 PGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred ccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 532 12121100 0 1 13568999999999999999986
No 112
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=36.82 E-value=1.4e+02 Score=31.37 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=58.2
Q ss_pred cccchhhchHHHHHHHHHc-CCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EEeccCCcchhhh
Q 011145 71 VAVDHYHRYKEDIDLIAKL-GFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLH 148 (492)
Q Consensus 71 ~a~d~y~ry~eDi~l~~~l-G~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~ 148 (492)
.+.+-.++ .+|++.+..+ ++. .++++ ..|.. . . ..+.++.+.|.++||++. ++...|..|.+
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~l----H~~~d-~-~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~-- 98 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVAL----HIPWD-R-V------EDYEELARYAEELGLKIGAINPNLFQDDDY-- 98 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-Cceee----ccCCc-c-c------cCHHHHHHHHHHcCCceeeeeCCccCCccc--
Confidence 33333343 6788888877 555 66665 12222 1 1 236778888999999987 78777766665
Q ss_pred hhcCCCCCH--HHHHHHHHHHHHHH---HHhCC
Q 011145 149 ESMGGWLNK--EIVKYFEIYADTCF---ASFGD 176 (492)
Q Consensus 149 ~~~gg~~~~--~~~~~f~~ya~~~~---~~~gd 176 (492)
++|.+.|+ ++.+.-.++++.|. +.+|.
T Consensus 99 -~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 99 -KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34788885 66677777777665 66666
No 113
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=36.75 E-value=1.8e+02 Score=30.19 Aligned_cols=74 Identities=23% Similarity=0.166 Sum_probs=55.0
Q ss_pred HHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHH
Q 011145 86 IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEI 165 (492)
Q Consensus 86 ~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ 165 (492)
..+.|+..+|+ -| | .+-. --+..+.+++.++++|+-.=+..+|-.++.-+.++||+-.....++--.+
T Consensus 97 a~~~G~~~iRI-------NP---G-Nig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~ 164 (360)
T PRK00366 97 AAEAGADALRI-------NP---G-NIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164 (360)
T ss_pred HHHhCCCEEEE-------CC---C-CCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHH
Confidence 34778999864 45 4 3421 02577999999999999999999999999999999876455566666666
Q ss_pred HHHHHH
Q 011145 166 YADTCF 171 (492)
Q Consensus 166 ya~~~~ 171 (492)
+++.+-
T Consensus 165 ~~~~le 170 (360)
T PRK00366 165 HAKILE 170 (360)
T ss_pred HHHHHH
Confidence 666543
No 114
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=36.60 E-value=2.1e+02 Score=29.20 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCcceEEeccC-----Ccchhhhhh---------------------cC---CCCCHHHHHHHHHHHHHH
Q 011145 120 YNNIIDALLQKGIQPYVTLYHW-----DLPLHLHES---------------------MG---GWLNKEIVKYFEIYADTC 170 (492)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~-----~~P~~l~~~---------------------~g---g~~~~~~~~~f~~ya~~~ 170 (492)
-.++|+.|+++|++.++.+.-+ +.|..-+.. .+ -|+||++++.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 3689999999999987654322 122221110 01 378999999988776665
Q ss_pred HHHhCCCc-cEEEEccCcccc
Q 011145 171 FASFGDRV-KNWITINEPLQT 190 (492)
Q Consensus 171 ~~~~gd~v-~~w~t~NEp~~~ 190 (492)
+ ..-| -+|+=+|||..+
T Consensus 146 ~---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred h---hCCCceEeecCCCcccc
Confidence 4 2334 577889999865
No 115
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=36.41 E-value=4.5e+02 Score=26.29 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=62.0
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCC
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL 155 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~ 155 (492)
..+.++-|+.+++.|+. ++.+|+=+---|.. | ..+ .+++.++++.+.+.|.. .++|. |- .|..
T Consensus 119 l~~~~~~v~~ak~~g~~-v~~~i~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~G~d-~i~l~---------DT-~G~~ 181 (287)
T PRK05692 119 LERFEPVAEAAKQAGVR-VRGYVSCVLGCPYE-G-EVP---PEAVADVAERLFALGCY-EISLG---------DT-IGVG 181 (287)
T ss_pred HHHHHHHHHHHHHcCCE-EEEEEEEEecCCCC-C-CCC---HHHHHHHHHHHHHcCCc-EEEec---------cc-cCcc
Confidence 44566778999999974 66666544334555 5 666 68999999999999987 45553 22 5666
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
+|.- ..+.++.+.+++++.--....-|-..+
T Consensus 182 ~P~~---v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 182 TPGQ---VRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred CHHH---HHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 6543 445666666778753334556666543
No 116
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=35.84 E-value=5.7e+02 Score=27.27 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHH----HHHHHcCCcc-eEEeccCCcchhhhhhcCCC
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNII----DALLQKGIQP-YVTLYHWDLPLHLHESMGGW 154 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i----~~l~~~gi~p-~vtL~H~~~P~~l~~~~gg~ 154 (492)
+.=++.|.+||+..|=|- =..|.|++. ...+. .+..++++ +.+.+.||+. ++|..-|..|.+.. |++
T Consensus 81 daaFef~~kLg~~~~~FH--D~D~~peg~--~~~E~-~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~ 152 (434)
T TIGR02630 81 DAAFEFFEKLGVPYYCFH--DRDIAPEGA--SLRET-NANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAA 152 (434)
T ss_pred HHHHHHHHHhCCCeeccC--ccccCCCCC--CHHHH-HHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcC
Confidence 334567999999987664 335888872 33321 12233343 4456679884 56788899999864 999
Q ss_pred CCHH
Q 011145 155 LNKE 158 (492)
Q Consensus 155 ~~~~ 158 (492)
+||+
T Consensus 153 TnPd 156 (434)
T TIGR02630 153 TSPD 156 (434)
T ss_pred CCCC
Confidence 9963
No 117
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=35.61 E-value=1.5e+02 Score=31.10 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=59.3
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC---CCCCCChhHHHHHHHHHHHHHHcCCc-ceEEeccCCcchhhhhhcCCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~---~g~~~n~~g~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~ 154 (492)
-++.+++|+++|+|.+-+++ ...-++- -|...+ .+-..+.++.+++.|+. +-+.|. +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGv--QS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg--------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGV--QAFQDELLALCGRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH--------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEc--ccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 46889999999999655555 2222211 021233 34456788899999998 455654 46663
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccEEEEccCcccccccccccccc
Q 011145 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF 200 (492)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~ 200 (492)
++.+.+.+=++.+.+-=-+.|..+...-||+.....-+..|.+
T Consensus 179 ---qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 ---QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred ---CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2233444444444432225677777777887544333444443
No 118
>PRK14706 glycogen branching enzyme; Provisional
Probab=35.54 E-value=1.7e+02 Score=32.91 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=54.2
Q ss_pred HHHHHcCCCeeeec-c-cccccccCCC--CC------CCC--hhHHHHHHHHHHHHHHcCCcceEEec--cCC-------
Q 011145 84 DLIAKLGFDAYRFS-I-SWSRIFPDGL--GT------KIN--MEGITFYNNIIDALLQKGIQPYVTLY--HWD------- 142 (492)
Q Consensus 84 ~l~~~lG~~~~R~s-i-~Wsri~P~~~--g~------~~n--~~g~~~y~~~i~~l~~~gi~p~vtL~--H~~------- 142 (492)
+-+|+||++++-+. | +- |... |. .++ --..+=.+.+|++|.++||.+|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e~----~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~ 250 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEH----PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLA 250 (639)
T ss_pred HHHHHcCCCEEEccchhcC----CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhh
Confidence 56899999998764 2 11 1110 10 000 00134578999999999999998754 432
Q ss_pred ----cchh-hhhhcCC-----------CCCHHHHHHHHHHHHHHHHHhC
Q 011145 143 ----LPLH-LHESMGG-----------WLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 143 ----~P~~-l~~~~gg-----------~~~~~~~~~f~~ya~~~~~~~g 175 (492)
.|.+ ..+...| ..++++.+.+.+=|+.-++.|+
T Consensus 251 ~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 251 HFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred ccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2221 0110011 2368899999999999999886
No 119
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.53 E-value=1.1e+02 Score=34.04 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcc
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (492)
-++|++++.+.|++.+|+..+.+.+ +-....|+.++++|+.+.+++.+-+.|
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 144 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSP 144 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCC
Confidence 3556899999999999998765432 224567788888888888887765555
No 120
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=35.48 E-value=27 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.453 Sum_probs=31.5
Q ss_pred cccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccC
Q 011145 101 SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (492)
Q Consensus 101 sri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~ 141 (492)
|++-|.. + .=..++++...+++..|.+++| +++.|++-
T Consensus 19 s~l~p~~-~-~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE-G-ADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc-c-cccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5778887 4 4567889999999999999999 78888764
No 121
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=35.43 E-value=1.5e+02 Score=30.56 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=39.8
Q ss_pred hHHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcch
Q 011145 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-Ws-ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 145 (492)
-++.++.|+++|++.+-+++. -+ ++...- |...+ .+-+.+.|+.+++.|+.++-.-.=+++|.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 378899999999986666552 22 222221 31223 56677899999999998553322356664
No 122
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=35.25 E-value=1.2e+02 Score=30.40 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=47.4
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
-++|++.+.++|++.+-+.++=|...-... + .=-++.++.+.++++.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLK-MTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-cCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 479999999999999988876665544321 3 3355678999999999999999988888
No 123
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=35.07 E-value=95 Score=30.24 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=47.2
Q ss_pred ecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 011145 96 FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 96 ~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g 175 (492)
+.+.|..+.++|.- .... .......+++.++++|+++++++..++...... -..++..++.|++=+-..+++|+
T Consensus 26 v~~~f~~i~~~G~l-~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGTL-NANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCeE-EecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 45567666666531 2211 124567889999999999999997765443221 22467777777776666666665
No 124
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=34.98 E-value=1.8e+02 Score=30.72 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=67.5
Q ss_pred chHHHHHHHHHcCCCeee--ecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEecc---CCcc---hhhhh
Q 011145 78 RYKEDIDLIAKLGFDAYR--FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH---WDLP---LHLHE 149 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R--~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H---~~~P---~~l~~ 149 (492)
...+-++.+++.|+..== +...|..-... - .+|++-+.-.+++++.|+++|++.++.++- -+.+ ..-..
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~--f-~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~ 120 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGD--F-TWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEA 120 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBT--T--B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHH
T ss_pred HHHHHHHHHHHcCCCccceeccccccccccc--c-ccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhH
Confidence 456777888888876444 44456553332 2 567666666789999999999998776653 2222 11110
Q ss_pred h--------cCC----------------CCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCcccc
Q 011145 150 S--------MGG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (492)
Q Consensus 150 ~--------~gg----------------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 190 (492)
+ ..| |.|+++.+.|.+..+.+++.+| ---+|+=+|||..+
T Consensus 121 ~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 121 KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 112 8899999999888888776643 23578899999864
No 125
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=34.68 E-value=5.7e+02 Score=26.96 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=63.1
Q ss_pred chHHHHHHHHHcCCCeeeecccccc-----------cccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-------
Q 011145 78 RYKEDIDLIAKLGFDAYRFSISWSR-----------IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY------- 139 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~Wsr-----------i~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~------- 139 (492)
...+-++.++++|++.+=+.=-|.. ..|+. . ++ +.| ...+++.+.+.||++-+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~-kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-K-KF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-T-TS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-h-hh-CCc---HHHHHHHHHHCCCeEEEEeccccccch
Confidence 3456678899999999888889964 33433 1 22 124 47899999999999765321
Q ss_pred ---cCCcchhhhhhcC------------CCCCHHHHHHHHHHHHHHHHHhC-CCcc
Q 011145 140 ---HWDLPLHLHESMG------------GWLNKEIVKYFEIYADTCFASFG-DRVK 179 (492)
Q Consensus 140 ---H~~~P~~l~~~~g------------g~~~~~~~~~f~~ya~~~~~~~g-d~v~ 179 (492)
.-.+|.|+....+ ...+|++.++..+-...+++.+| +.+|
T Consensus 133 S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK 188 (394)
T PF02065_consen 133 SDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIK 188 (394)
T ss_dssp SCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred hHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1357888753211 15678999999988888888886 4443
No 126
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=33.82 E-value=1.4e+02 Score=29.72 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=39.7
Q ss_pred CcccchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 70 DVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 70 ~~a~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
|-+|-.=..|..|+++++.-+. ..|.= | -+ ..-...+..++.+.|++.++.++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-----------~--sD---Cn~le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRTY-----------G--SD---CNTLENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEEe-----------e--cc---chhhhhhHHHHHhcCceEEEEEe
Confidence 3478888999999999998886 55531 1 11 22346788899999999999885
No 127
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=33.81 E-value=1.5e+02 Score=30.79 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=58.7
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC---CCCCChhHHHHHHHHHHHHHHcCCcc-eEEeccCCcchhhhhhcCCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGL---GTKINMEGITFYNNIIDALLQKGIQP-YVTLYHWDLPLHLHESMGGW 154 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~---g~~~n~~g~~~y~~~i~~l~~~gi~p-~vtL~H~~~P~~l~~~~gg~ 154 (492)
-++.++.|+++|+|.+.+++ ..+-++-- |...+ .+-..+.|+.+++.|+.. -+.|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg--------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLI-YGLPT--------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 36889999999999554444 33333210 21222 344567888999999974 45543 46663
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccEEEEccCcccc
Q 011145 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (492)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 190 (492)
++.+.|.+-++.+.+-==+.|..+...-||+..
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 345566666666665323578888888888753
No 128
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=33.46 E-value=1.8e+02 Score=29.73 Aligned_cols=91 Identities=15% Similarity=0.265 Sum_probs=62.8
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHH
Q 011145 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (492)
Q Consensus 82 Di~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~ 161 (492)
+.+.+|++|.++..|=+=|. |++.. .+|..-.++.+++.++|++++|--++=+..++.+. .+. ++ .++..
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~--~~~-~~---~~yak 180 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAE-EINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI--PDN-GS---VEFAK 180 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCCh-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC--CCC-Cc---HHHHH
Confidence 36889999999999988764 44423 68888899999999999999999999888776554 122 22 22222
Q ss_pred HHHHHHHHHHHHhCC---CccEEE
Q 011145 162 YFEIYADTCFASFGD---RVKNWI 182 (492)
Q Consensus 162 ~f~~ya~~~~~~~gd---~v~~w~ 182 (492)
.--+.+-..++.|++ .|+.|=
T Consensus 181 ~kP~~V~~a~kefs~~~~gvDVlK 204 (325)
T TIGR01232 181 VKPRKVNEAMKLFSEPRFNVDVLK 204 (325)
T ss_pred hChHHHHHHHHHhccCCCCCcEEE
Confidence 223344456666766 455554
No 129
>PRK12677 xylose isomerase; Provisional
Probab=33.14 E-value=3.2e+02 Score=28.72 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=45.9
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EEeccCCcchhhhhhcCCCCCH
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~~~ 157 (492)
..|-++.++++|+..+=+.. ..+.|-.. ...+. -...+++-+.+.++||++. +|...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~~--~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFGA--TDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCCC--Chhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 68999999999999886632 22444331 11111 1246778888899999965 55555656654 23888884
No 130
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=33.08 E-value=1.2e+02 Score=31.34 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=43.7
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 83 i~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
++.++++|.+++-+-+-|. |+... .+|..-+++..++.++|.+.||..++-+.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~-~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDD-AINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcch-HHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 5779999999999999886 55322 45777889999999999999999888643
No 131
>PRK03705 glycogen debranching enzyme; Provisional
Probab=32.94 E-value=84 Score=35.52 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=37.5
Q ss_pred HHHHHHcCCCeeeec-c-cc----------------------cccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 83 IDLIAKLGFDAYRFS-I-SW----------------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 83 i~l~~~lG~~~~R~s-i-~W----------------------sri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
|+-+|+|||+++=+. | +- -.+.|.- |+..+ ..++=+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~-~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPE-TALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCc-chHHHHHHHHHHHHHCCCEEEEEE
Confidence 889999999998764 2 11 1222222 21111 235678999999999999999975
Q ss_pred c
Q 011145 139 Y 139 (492)
Q Consensus 139 ~ 139 (492)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 4
No 132
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=32.92 E-value=1.3e+02 Score=33.04 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCeeeeccc--ccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCH
Q 011145 80 KEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~--Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 157 (492)
++.+++|+++|++.+-+++. -.++.-.- +...+ .+-..+.++.++++|+++.+.|. +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~i-nRght---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERT-KRGHT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 68899999999987766662 11222111 11122 34456778889999998665553 46663
Q ss_pred HHHHHHHHHHHHHHH--HhC-CCccEEEEccCccccccccccccccCCC
Q 011145 158 EIVKYFEIYADTCFA--SFG-DRVKNWITINEPLQTAVNGYCTGIFAPG 203 (492)
Q Consensus 158 ~~~~~f~~ya~~~~~--~~g-d~v~~w~t~NEp~~~~~~gy~~G~~~pg 203 (492)
++.+.+.+=++.+++ .++ |.|+.+.+.=.|+.....-|..|.|.|.
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 223455555566665 355 5777777666666544444566777665
No 133
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=32.80 E-value=1.4e+02 Score=34.85 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=42.5
Q ss_pred hhchHHHHHHHHHcCCCeeeeccc---------------ccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSIS---------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~---------------Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
+....+-+.-+++||++++=+|-- +.+|.|.- | +.+-+++++++|.++||.+|+.+.
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G------GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 445788889999999999876632 33444443 3 245679999999999999999754
No 134
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=32.56 E-value=1.2e+02 Score=29.37 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 011145 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 117 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g 175 (492)
.+...+.|..|+++|+++++++.-+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3556789999999999999999765543221 112456667777777777777776
No 135
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.08 E-value=2.5e+02 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.+|++.+.+.|++.+|+.++-+.+ .-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998765532 1236688888999999888874
No 136
>PRK12568 glycogen branching enzyme; Provisional
Probab=31.72 E-value=2.5e+02 Score=32.21 Aligned_cols=93 Identities=22% Similarity=0.326 Sum_probs=59.8
Q ss_pred hhchHHH-HHHHHHcCCCeeeec-c-------ccc-------ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 76 YHRYKED-IDLIAKLGFDAYRFS-I-------SWS-------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 76 y~ry~eD-i~l~~~lG~~~~R~s-i-------~Ws-------ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
|.-..+. |+-+|+||++++=+. | +|- .+.|.- | ..+-++.+|++|.++||.+|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G------~~~dfk~lV~~~H~~Gi~VIlD~V 340 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-G------SPDGFAQFVDACHRAGIGVILDWV 340 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 4444444 688999999998764 2 231 111111 3 145679999999999999999865
Q ss_pred --cCCcc-----------hhhh-h-hcC----------CCCCHHHHHHHHHHHHHHHHHhC
Q 011145 140 --HWDLP-----------LHLH-E-SMG----------GWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 140 --H~~~P-----------~~l~-~-~~g----------g~~~~~~~~~f~~ya~~~~~~~g 175 (492)
|+..- .+.. + ..| .+.++++.+.+.+=|..-+++|+
T Consensus 341 ~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 341 SAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 43211 1100 0 001 24568889999999999999886
No 137
>PLN02389 biotin synthase
Probab=31.27 E-value=1.2e+02 Score=31.71 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=43.5
Q ss_pred hchHHHHHHHHHcCCCeeeecccccc-cccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSR-IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsr-i~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
..-+|.++.||++|++.|-.+++=++ ++|.-.. .-+ ++..-+.++.+++.||++..++.
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~s---~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TRS---YDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CCC---HHHHHHHHHHHHHcCCeEeEEEE
Confidence 35789999999999999998875233 4554311 123 67778999999999999876653
No 138
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.77 E-value=2.3e+02 Score=29.08 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.+|++.+.+.|++.+|+....+.. +-..+.|+.+++.|+++.+++.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999988753221 2346899999999999988875
No 139
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.68 E-value=4.3e+02 Score=26.55 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=32.5
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccC
Q 011145 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (492)
Q Consensus 102 ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~ 141 (492)
+..|...| -++++-+..++++++.+.++|-..++=|.|-
T Consensus 62 ~~~~~~~~-~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 62 KGYPGQLG-IYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred cCCCCCcC-cCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 44554446 6888899999999999999999999999984
No 140
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.94 E-value=1e+02 Score=34.45 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCCCeeeecccc-------------cccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 79 YKEDIDLIAKLGFDAYRFSISW-------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W-------------sri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
..+-|+-+++|||+++=++--. -+|.|.= | ..+=++++|++|.++||++|+.+.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G------t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G------GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4566888999999999886321 1222221 2 235578999999999999999764
No 141
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=29.24 E-value=82 Score=31.29 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHHcCCcceEEeccC
Q 011145 81 EDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (492)
Q Consensus 81 eDi~l~~~lG~~~~R~si~Wsri~P~~-~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~ 141 (492)
.+++++++.|++.+|+.++=|...-.. .| .-.++.++...+.++.+++.|+++.++..+|
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALG-TTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 689999999999999987655443221 13 2235668899999999999999998877665
No 142
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=28.78 E-value=1.2e+02 Score=34.04 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCH-----HHHHHHHHHHHHHHHHhCCCccEEEEccCcc
Q 011145 122 NIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK-----EIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (492)
Q Consensus 122 ~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~-----~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 188 (492)
.|+.++++++=..-+....|..|.|+. +||..+ .++.+..++..-+.+.+|-.++|-=++||=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~ 184 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERG 184 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS-
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccC
Confidence 688999999888888888999999996 444332 3444556777778888888888877889943
No 143
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.77 E-value=1.6e+02 Score=30.31 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHH
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEI 159 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 159 (492)
.+|++.+.+.|++.+|+....++. +--.+.|+.+++.|+++.+++..-. ...
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~~ 142 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMSH--------------MAP 142 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CCC
Confidence 589999999999999998754332 2247899999999999999987421 123
Q ss_pred HHHHHHHHHHHHHHhCC
Q 011145 160 VKYFEIYADTCFASFGD 176 (492)
Q Consensus 160 ~~~f~~ya~~~~~~~gd 176 (492)
.+.+.+.++.+. .+|-
T Consensus 143 ~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 143 PEKLAEQAKLME-SYGA 158 (337)
T ss_pred HHHHHHHHHHHH-hCCC
Confidence 456667777664 4554
No 144
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=28.75 E-value=1.3e+02 Score=30.09 Aligned_cols=58 Identities=19% Similarity=0.325 Sum_probs=42.8
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhh
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 148 (492)
-++=+++++++||..+.+.+= + .=++..+++|+++++.+.+++| +|.+|--..|.=++
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~-~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~ 165 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------D-RDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLR 165 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------S-STSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHH
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------C-CCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCccc
Confidence 377789999999999999863 2 3468889999999999999988 77887655665444
No 145
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.75 E-value=1.5e+02 Score=29.38 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCc
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL 143 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~ 143 (492)
..+=++.++++|.+++-+.+..+|..... .+++..+ +.+-+.+.++++.......|-.+
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~---~~~~~~~---~~~~~~~~~~~~~~~~i~~Hapy 71 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP---MLEEEVI---DWFKAALETNKNLSQIVLVHAPY 71 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC---CCCHHHH---HHHHHHHHHcCCCCcceeccCCe
Confidence 46678999999999999999888877655 4554333 34445578888874444555333
No 146
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=28.32 E-value=99 Score=33.98 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=39.2
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCC------CCCChh--HHHHHHHHHHHHHHcCCcceEEec
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g------~~~n~~--g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
.-..+-++-+++||++++=++--.+.-.- ..| ..++++ ..+-++++|++|.++||++|+.+.
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~-~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLR-DDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCC-CCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 33456688999999999877632111000 001 011211 245679999999999999999754
No 147
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=28.14 E-value=1.3e+02 Score=34.85 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=42.1
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccc---------------ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~Ws---------------ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
+....+-+.-+++||++++=+|--+. +|.|.- | +.+-+++++++|.++||.+|+.+.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G------GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 34468889999999999997764332 233332 2 255679999999999999999753
No 148
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=28.06 E-value=84 Score=28.30 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=40.4
Q ss_pred CcccchhhchHHHHHH-HHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce
Q 011145 70 DVAVDHYHRYKEDIDL-IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (492)
Q Consensus 70 ~~a~d~y~ry~eDi~l-~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~ 135 (492)
..+|......++||+. |+++|+..+++.+.|+--.-. + .+.++| -..|++.||.|=
T Consensus 35 y~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~--d-~it~~g-------r~~l~~~giapp 91 (146)
T TIGR02159 35 YSGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT--D-WITEDA-------REKLREYGIAPP 91 (146)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh--H-HCCHHH-------HHHHHhcCccCC
Confidence 3467788888999865 777899999988877543332 3 566554 467899999874
No 149
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.91 E-value=2e+02 Score=28.64 Aligned_cols=72 Identities=10% Similarity=-0.009 Sum_probs=51.3
Q ss_pred ccchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhh
Q 011145 72 AVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (492)
Q Consensus 72 a~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 147 (492)
+.+......+--+.+|++|+..+|-+..=+|--|.+.- .+-+ +.+..+-+.+.+.||..+.+.++-..+..+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~-G~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQ-GLGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccC-CcHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 45667777888899999999999998765777765421 1334 455667777899999988888754444333
No 150
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=27.88 E-value=2.8e+02 Score=27.89 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCcccccccccc
Q 011145 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYC 196 (492)
Q Consensus 117 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~ 196 (492)
++-+.+.++.++++||++.+.+. +++|. ++.+.+.+=++.+.+-=-+.|+.....-.|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45567889999999999777654 35553 234566666666554333678888777788765544455
Q ss_pred ccccCC
Q 011145 197 TGIFAP 202 (492)
Q Consensus 197 ~G~~~p 202 (492)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 565554
No 151
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=27.52 E-value=4.2e+02 Score=24.31 Aligned_cols=50 Identities=14% Similarity=0.398 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcc
Q 011145 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (492)
Q Consensus 82 Di~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (492)
|.+.+|+.|++..=+=+. +|.+ ..| ..|..-++.++++|| .+..+||..|
T Consensus 13 d~~~~k~~gi~fviiKat------eG~~-y~D----~~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EGTT-FVD----SYFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CCCc-ccC----HhHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 567777777664322221 2323 456 467888888888998 4688887665
No 152
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=27.46 E-value=2.1e+02 Score=29.42 Aligned_cols=73 Identities=25% Similarity=0.251 Sum_probs=53.7
Q ss_pred HHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHH
Q 011145 86 IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEI 165 (492)
Q Consensus 86 ~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ 165 (492)
..+.|+..+|+ -| | .+-. -+....+++.++++||-.=+..+|-.+..-+.++||+-+....++--.+
T Consensus 91 ~~~~g~~k~RI-------NP---G-Nig~--~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~ 157 (361)
T COG0821 91 AAECGVDKVRI-------NP---G-NIGF--KDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALE 157 (361)
T ss_pred hhhcCcceEEE-------CC---c-ccCc--HHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHH
Confidence 34556777764 34 4 2322 2378999999999999999999999999999999987766666665555
Q ss_pred HHHHHH
Q 011145 166 YADTCF 171 (492)
Q Consensus 166 ya~~~~ 171 (492)
+|+.+-
T Consensus 158 ~a~~~e 163 (361)
T COG0821 158 HAELLE 163 (361)
T ss_pred HHHHHH
Confidence 555543
No 153
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=27.38 E-value=1.1e+02 Score=31.55 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHH
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEI 159 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 159 (492)
..-|++|.+.|++-+=.|+ +.|++ .....+..+.++++.+.+.|+++||.. .|.-|.. -||. .+.
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~----~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S-~~~ 83 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE----DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNIS-LDN 83 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCC-hHH
Confidence 3447888899987666655 34443 344578999999999999999999998 5887764 3333 234
Q ss_pred HHHHHHH
Q 011145 160 VKYFEIY 166 (492)
Q Consensus 160 ~~~f~~y 166 (492)
++.|.+.
T Consensus 84 l~~f~e~ 90 (360)
T COG3589 84 LSRFQEL 90 (360)
T ss_pred HHHHHHh
Confidence 5555443
No 154
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=27.30 E-value=2.9e+02 Score=28.61 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=54.0
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC---CCCCCChhHHHHHHHHHHHHHHcCCc-ceEEeccCCcchhhhhhcCCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~---~g~~~n~~g~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~ 154 (492)
-++.+++|+++|++.+-+++ ...-++- -|...+ .+...+.++.+++.|+. +.+.|. +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGv--QS~~~~~L~~l~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg--------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGM--QSAAPHVLAVLDRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG--------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC---------
Confidence 46889999999999555555 2222221 021223 45567889999999998 545553 45553
Q ss_pred CCHHHHHHHHHHHHHHHHHhC-CCccEEEEccCcccc
Q 011145 155 LNKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQT 190 (492)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~~~ 190 (492)
++.+.|.+=.+.+.+ ++ +.|..+...-+|+..
T Consensus 172 ---qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 172 ---ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTA 204 (375)
T ss_pred ---CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCCh
Confidence 233445554444443 44 455555544566643
No 155
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.21 E-value=2.2e+02 Score=30.46 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC---CCCCCChhHHHHHHHHHHHHHHcCCc-ceEEeccCCcch
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPL 145 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~---~g~~~n~~g~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~ 145 (492)
-+|.+++|+++|++.+.+++. ..-++- -+...+ .+-..+.|+.|++.||. +.++| =+++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvq--S~~~~~L~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQ--DFDPEVQKAVNRIQP---FEFTFALVEAARELGFTSINIDL-IYGLPK 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCC--CCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCcEEEEE-EccCCC
Confidence 479999999999996666652 222211 021222 45567889999999995 44444 346664
No 156
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=26.97 E-value=1.5e+02 Score=29.96 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCc-ceE----------------EeccCCcchhhhhhcCCCCCH-H-HHHHHHHHHHHHHHHhCCC
Q 011145 117 ITFYNNIIDALLQKGIQ-PYV----------------TLYHWDLPLHLHESMGGWLNK-E-IVKYFEIYADTCFASFGDR 177 (492)
Q Consensus 117 ~~~y~~~i~~l~~~gi~-p~v----------------tL~H~~~P~~l~~~~gg~~~~-~-~~~~f~~ya~~~~~~~gd~ 177 (492)
.+.|.++++.|++.||+ |++ .+++-.+|.|+.++.-..... + ..+.=.+||...++++-+.
T Consensus 188 ~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 188 VESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred hHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 45667899999999965 322 345789999998876666442 2 2223344555555554332
Q ss_pred -c--cEEEEccCccc
Q 011145 178 -V--KNWITINEPLQ 189 (492)
Q Consensus 178 -v--~~w~t~NEp~~ 189 (492)
| -|..|+|-+..
T Consensus 268 gv~GvH~yt~n~~~~ 282 (296)
T PRK09432 268 GVKDFHFYTLNRAEL 282 (296)
T ss_pred CCCEEEEecCCChHH
Confidence 2 23346776654
No 157
>PRK09505 malS alpha-amylase; Reviewed
Probab=26.67 E-value=1.3e+02 Score=34.21 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=40.9
Q ss_pred hHHHHHHHHHcCCCeeeecccccccc-----------c--CCCC------CCCChh--HHHHHHHHHHHHHHcCCcceEE
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIF-----------P--DGLG------TKINME--GITFYNNIIDALLQKGIQPYVT 137 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~-----------P--~~~g------~~~n~~--g~~~y~~~i~~l~~~gi~p~vt 137 (492)
..+-|+-+++||++++=++--...+. | ...| ..+|+. ..+=++++|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999999875443321 1 0001 011211 3556899999999999999997
Q ss_pred ec
Q 011145 138 LY 139 (492)
Q Consensus 138 L~ 139 (492)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 158
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.62 E-value=1.8e+02 Score=29.65 Aligned_cols=65 Identities=15% Similarity=0.333 Sum_probs=46.8
Q ss_pred chHHHHHHHHHcCCCeeeecc----cccc---cccCCC-----CCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcch
Q 011145 78 RYKEDIDLIAKLGFDAYRFSI----SWSR---IFPDGL-----GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si----~Wsr---i~P~~~-----g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 145 (492)
..++=|+.|+..++|.+-+-+ +|.- -.|.-+ |..+.+ +-++++++.++++||++|.-+ |+|.
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PG 92 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPG 92 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCcc
Confidence 356778999999999888876 5642 233311 114554 345899999999999999887 7887
Q ss_pred hhh
Q 011145 146 HLH 148 (492)
Q Consensus 146 ~l~ 148 (492)
...
T Consensus 93 H~~ 95 (311)
T cd06570 93 HAS 95 (311)
T ss_pred chH
Confidence 654
No 159
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=26.58 E-value=1.8e+02 Score=29.76 Aligned_cols=64 Identities=22% Similarity=0.391 Sum_probs=45.6
Q ss_pred chHHHHHHHHHcCCCeeeeccc----c-------cccccCC---------CCCCCChhHHHHHHHHHHHHHHcCCcceEE
Q 011145 78 RYKEDIDLIAKLGFDAYRFSIS----W-------SRIFPDG---------LGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~----W-------sri~P~~---------~g~~~n~~g~~~y~~~i~~l~~~gi~p~vt 137 (492)
..++-|+.|+..++|.+-+-++ | +.+-..+ .| .+.+ +=++++++.++++||++|--
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~-~YT~---~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGG-YYTQ---EDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCC-cCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 4678899999999998887763 3 2221111 02 3553 34589999999999998887
Q ss_pred eccCCcchhhh
Q 011145 138 LYHWDLPLHLH 148 (492)
Q Consensus 138 L~H~~~P~~l~ 148 (492)
+ |+|....
T Consensus 95 i---D~PGH~~ 102 (329)
T cd06568 95 I---DMPGHTN 102 (329)
T ss_pred c---CCcHHHH
Confidence 7 8888764
No 160
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=26.56 E-value=1.5e+02 Score=34.16 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=59.4
Q ss_pred hhhch-HHHHHHHHHcCCCeeeeccccc---------------ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 75 HYHRY-KEDIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 75 ~y~ry-~eDi~l~~~lG~~~~R~si~Ws---------------ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
.|.-+ ++-|..+|+||++++-+.--.. .+.|.- | ..+-++++|++|.++||.+|+.+
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-G------tp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-G------TPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-C------CHHHHHHHHHHHHHCCCEEEEEe
Confidence 34443 3448999999999998763221 111111 2 13457899999999999999987
Q ss_pred cc--CCc-------------chhhhhhcC-----------CCCCHHHHHHHHHHHHHHHHHhC
Q 011145 139 YH--WDL-------------PLHLHESMG-----------GWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 139 ~H--~~~-------------P~~l~~~~g-----------g~~~~~~~~~f~~ya~~~~~~~g 175 (492)
.+ ..- +.|+..... .+.++++...+.+-++.-+++|+
T Consensus 321 V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 321 VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 64 211 122221101 13357888888888888888885
No 161
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=26.37 E-value=96 Score=37.75 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=40.0
Q ss_pred hhhchH--HHHHHHHHcCCCeeeecccccccc-c----CC-C---CC------CCCh----hHHHHHHHHHHHHHHcCCc
Q 011145 75 HYHRYK--EDIDLIAKLGFDAYRFSISWSRIF-P----DG-L---GT------KINM----EGITFYNNIIDALLQKGIQ 133 (492)
Q Consensus 75 ~y~ry~--eDi~l~~~lG~~~~R~si~Wsri~-P----~~-~---g~------~~n~----~g~~~y~~~i~~l~~~gi~ 133 (492)
-|.... +.|+-+|+|||+++=+.--..... . .+ . |+ .++. ...+=+++||++|.++||+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~ 262 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIA 262 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCE
Confidence 344444 668899999999998752111110 0 00 0 00 0111 1456689999999999999
Q ss_pred ceEEec
Q 011145 134 PYVTLY 139 (492)
Q Consensus 134 p~vtL~ 139 (492)
+|+.+.
T Consensus 263 VILDvV 268 (1221)
T PRK14510 263 VILDVV 268 (1221)
T ss_pred EEEEEc
Confidence 999743
No 162
>PRK14705 glycogen branching enzyme; Provisional
Probab=26.15 E-value=4e+02 Score=32.56 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=56.5
Q ss_pred HHHHHHcCCCeeeec-c-------cccccccCCCC-CCCChhHHHHHHHHHHHHHHcCCcceEEec--cCCcchhhhhhc
Q 011145 83 IDLIAKLGFDAYRFS-I-------SWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTLY--HWDLPLHLHESM 151 (492)
Q Consensus 83 i~l~~~lG~~~~R~s-i-------~Wsri~P~~~g-~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~--H~~~P~~l~~~~ 151 (492)
|+-+|+||++++=+. | +|- -.|.+-- ....--..+=++.+|++|.++||.+|+.+. |+..=.|....+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 688999999999764 3 231 1111100 000001244578999999999999999854 542111110000
Q ss_pred -------------------C----CCCCHHHHHHHHHHHHHHHHHhC
Q 011145 152 -------------------G----GWLNKEIVKYFEIYADTCFASFG 175 (492)
Q Consensus 152 -------------------g----g~~~~~~~~~f~~ya~~~~~~~g 175 (492)
| .+.++++.+.+.+=|..-+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 14568889999999999999987
No 163
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.09 E-value=4e+02 Score=27.93 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=53.4
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE-EeccCCcchhhhhhcCCC
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV-TLYHWDLPLHLHESMGGW 154 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~v-tL~H~~~P~~l~~~~gg~ 154 (492)
.-...+-|+.++++|+..+=| ....+.|-+ - ...+.. ...+++-+.|.++||++.. |..-+..|.+. .||+
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~-~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~---~g~l 102 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTF--HDDDLIPFG-A-PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK---DGGF 102 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEe--cccccCCCC-C-ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc---CCCC
Confidence 335688899999999998854 334455654 1 111111 3367788889999999654 43223334332 2788
Q ss_pred CCH--HHHHHHHHHHHH---HHHHhCCC
Q 011145 155 LNK--EIVKYFEIYADT---CFASFGDR 177 (492)
Q Consensus 155 ~~~--~~~~~f~~ya~~---~~~~~gd~ 177 (492)
.++ +..+.=.++.+. ++..+|-.
T Consensus 103 as~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 103 TSNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 875 333332233332 35666653
No 164
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.08 E-value=2.2e+02 Score=29.61 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=56.3
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC---CCCCCChhHHHHHHHHHHHHHHcCCcce-EEeccCCcchhhhhhcCCC
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGW 154 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~---~g~~~n~~g~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~ 154 (492)
-++.++.|+++|++-+-+++. ..-|+- -|..-+ .+-..+.|+.+++.|+.++ +.| =+++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvq--S~~~~~L~~l~r~~~---~~~~~~ai~~~~~~G~~~v~~dl-i~Glpg--------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQ--SFSEEKLKRLGRIHG---PDEAKRAAKLAQGLGLRSFNLDL-MHGLPD--------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccC--cCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCeEEEEe-ecCCCC---------
Confidence 359999999999996666652 222211 021222 3445677899999999875 545 356664
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
++.+.|.+-.+.+.+-==+.|..+...=||+.
T Consensus 171 ---qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 ---QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred ---CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23445555555555533356777766666653
No 165
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.89 E-value=89 Score=30.52 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=40.1
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE
Q 011145 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (492)
Q Consensus 74 d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~v 136 (492)
....+++.-|++++.+|.+++++........+.. . ..-+...+.++.+.+.+.++||+..+
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-N-VIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-H-HHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3456778889999999999999964322111111 1 11234466778888889999986433
No 166
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.55 E-value=69 Score=29.34 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=39.7
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceE
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYV 136 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~v 136 (492)
.....++-+++++.+|++.+++...+-...+... . .--....+.++.+.+.+.+.|+.+.+
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE-ENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHH-HHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHH-HHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 3567889999999999999999876411111110 0 11123356777888888889976443
No 167
>PTZ00445 p36-lilke protein; Provisional
Probab=25.29 E-value=85 Score=30.21 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHH---------HHHHHHHHHHHHHH
Q 011145 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE---------IVKYFEIYADTCFA 172 (492)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~---------~~~~f~~ya~~~~~ 172 (492)
+.-+.+++.|++.||+.+++=+--++=. ..-|||.++. ....|..+...+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~---~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMIT---KHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhh---hhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 4457889999999999888644222211 1249999997 45556665555543
No 168
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=25.24 E-value=1.9e+02 Score=36.37 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=47.2
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccc---------------ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEec-
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY- 139 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~Ws---------------ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~- 139 (492)
+....+-+.-+++||++++=+|--+. +|.|.- | +.+-+++++++|.++||.+|+.+.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G------GEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44567788999999999997764443 333332 2 355679999999999999999864
Q ss_pred -cCC-----cchhhh
Q 011145 140 -HWD-----LPLHLH 148 (492)
Q Consensus 140 -H~~-----~P~~l~ 148 (492)
|.. .|.|..
T Consensus 830 NH~~~~~~~n~w~~d 844 (1693)
T PRK14507 830 NHMGVGGADNPWWLD 844 (1693)
T ss_pred cccCCCccCCHHHHH
Confidence 653 555543
No 169
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=25.22 E-value=4.6e+02 Score=27.28 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCc-ceEEeccCCcchhhhh
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHE 149 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~ 149 (492)
-+.|..+.++|...+|+++. +.++.+-..++.+.|++.|.. |+|.=.|||+=..|..
T Consensus 34 v~QI~~L~~aGceivRvavp-------------~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a 91 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAVP-------------DMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA 91 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE--------------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCC-------------CHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH
Confidence 47789999999999999864 455567778899999998886 8888899998888764
No 170
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.01 E-value=1.9e+02 Score=29.15 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=45.6
Q ss_pred chHHHHHHHHHcCCCeeeeccc----ccccccCC---CCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhh
Q 011145 78 RYKEDIDLIAKLGFDAYRFSIS----WSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~----Wsri~P~~---~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 148 (492)
-.++=|++|+.+|+|.+-+-++ +.. .|.- .| .+.++. ++++++.++++||++|.-+ ++|..+.
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~-~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRG-AYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCC-CcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 3688899999999998887443 221 1221 14 677544 4899999999999998877 6777664
No 171
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=24.83 E-value=2.9e+02 Score=25.88 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccEEE
Q 011145 157 KEIVKYFEIYADTCFASFGDRVKNWI 182 (492)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~gd~v~~w~ 182 (492)
.+..+...+|++.|-+++|-++-.++
T Consensus 109 ~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 109 KKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 45556667777777776665544333
No 172
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=24.80 E-value=3e+02 Score=29.20 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCCeeeec--ccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EEeccCCcchh--hhhhcCCC
Q 011145 80 KEDIDLIAKLGFDAYRFS--ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLH--LHESMGGW 154 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~s--i~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~--l~~~~gg~ 154 (492)
.+|++.+.++.--..|++ +.|. .+|.+.++ +.++++||..- ++..-|..|+- -.-++|..
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd---------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSL 137 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD---------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSL 137 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC---------cCCHHHHH------HHHHHcCCccceeccccccCccccccccccccc
Confidence 678888888887777776 5881 24655554 88899999988 77766777732 12245778
Q ss_pred CCH--HHHHHHHHHHHHHH---HHhCCC-ccEEE
Q 011145 155 LNK--EIVKYFEIYADTCF---ASFGDR-VKNWI 182 (492)
Q Consensus 155 ~~~--~~~~~f~~ya~~~~---~~~gd~-v~~w~ 182 (492)
.|| .+.+...+.+..|. +..|.. |..|+
T Consensus 138 tnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 138 SHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 884 67777777776665 555543 34443
No 173
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=24.72 E-value=35 Score=26.73 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=16.6
Q ss_pred cchhhchH--HHHHHHHHcCC
Q 011145 73 VDHYHRYK--EDIDLIAKLGF 91 (492)
Q Consensus 73 ~d~y~ry~--eDi~l~~~lG~ 91 (492)
.|||..|+ +|.+.|+++|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 78888876 89999999997
No 174
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.59 E-value=2.1e+02 Score=29.05 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=61.7
Q ss_pred hHHHHHHHHHcCCCeeee--cccccccccCCC-CCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCc---chhhhhh--
Q 011145 79 YKEDIDLIAKLGFDAYRF--SISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLHES-- 150 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~--si~Wsri~P~~~-g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~~~-- 150 (492)
..+-++.+++.||..==+ .+.|........ ...+|.+-+---+++|+.|+++|++.++.+.-+-. |..-+..
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 344555666666653333 334443211000 01233333333468999999999999887664422 2211100
Q ss_pred -------cC----------------CCCCHHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 151 -------MG----------------GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 151 -------~g----------------g~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
-| -++||++.+.|.+..+..+...| -.-+|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 01 15789999999887765555443 2357888999974
No 175
>PRK01060 endonuclease IV; Provisional
Probab=24.54 E-value=4.2e+02 Score=25.80 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~ 135 (492)
+++-++.++++|++.+=+.+.-++..... ..+.+ ..+++-+.+.++||++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~---~~~~~---~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRK---PLEEL---NIEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCC---CCCHH---HHHHHHHHHHHcCCCCC
Confidence 78889999999999999987655544322 34533 34556667789999853
No 176
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=24.48 E-value=2.7e+02 Score=28.46 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=60.1
Q ss_pred hchHHHHHHHHHcCCCeeeecc--cccccc-cCCC------CCCCChhHHHHHHHHHHHHHHcCCcceEEeccCC-----
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSI--SWSRIF-PDGL------GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD----- 142 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si--~Wsri~-P~~~------g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~----- 142 (492)
.+.++=++++++.|+|++=+.+ .+-.|- +... | -....+.-..++++.|+++||.||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~g--a~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIG--AVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcc--cccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 4578889999999999998876 343331 1110 2 1111134467899999999999998766432
Q ss_pred --cchhhhhhcC----------CCCCH---HHHHHHHHHHHHHHHH
Q 011145 143 --LPLHLHESMG----------GWLNK---EIVKYFEIYADTCFAS 173 (492)
Q Consensus 143 --~P~~l~~~~g----------g~~~~---~~~~~f~~ya~~~~~~ 173 (492)
.|.|....-+ .|.|| ++.++-.+-|+.+++.
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 3444331112 27775 6677777777777643
No 177
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.60 E-value=3.4e+02 Score=26.57 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=37.1
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHc-CCcceE
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYV 136 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~-gi~p~v 136 (492)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 6689999999999999998887665444432 2233 3456677777777 665443
No 178
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.34 E-value=4e+02 Score=29.61 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCc-ceEEeccCCcchhhhh
Q 011145 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHE 149 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~ 149 (492)
-+.|..+.++|...+|+.+. +.+..+-...+.+.|++.|+. |+|.=.||+.-..+..
T Consensus 48 v~Qi~~L~~aGceiVRvtvp-------------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a 105 (606)
T PRK00694 48 VRQICALQEWGCDIVRVTVQ-------------GLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHV 105 (606)
T ss_pred HHHHHHHHHcCCCEEEEcCC-------------CHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHH
Confidence 46788999999999999764 344566778899999999987 8888899999887653
No 179
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.30 E-value=1.9e+02 Score=27.98 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=38.1
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCC-CCCChhHHHHHHHHHHHHHHcCCcceEE-eccCCcc
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVT-LYHWDLP 144 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g-~~~n~~g~~~y~~~i~~l~~~gi~p~vt-L~H~~~P 144 (492)
...++=|++++++|.+.+++...+ + |.+.. .+.-....+..+++.+.+.+.||...+= +.|++.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 446777899999999998864332 1 22100 0111223455567777778899875553 3455444
No 180
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=23.14 E-value=2.5e+02 Score=31.35 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=33.3
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEecc
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H 140 (492)
-++|++++.+.|++.+|+..+-+.+ +-....|+.++++|....+++..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 4567889999999999998654433 12245566677777777666654
No 181
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=23.10 E-value=76 Score=27.42 Aligned_cols=30 Identities=33% Similarity=0.315 Sum_probs=25.7
Q ss_pred EEEeecCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHHHH
Q 011145 386 IYVTENGMDDEENDSSPLHEMLDDKLRVRYFKGYLSAVAQAIK 428 (492)
Q Consensus 386 I~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~~l~~~~~Ai~ 428 (492)
.+|+|.|++. |..+.+|-+....+++.||.
T Consensus 2 rl~iEmGmG~-------------DlhGqD~TkAA~RAvrDAI~ 31 (116)
T TIGR02058 2 ILFIEMGMGV-------------DQHGQNITKAAMRAVRNAIA 31 (116)
T ss_pred eEEEEecccc-------------cccCccHHHHHHHHHHHHHh
Confidence 5899999986 45788999999999999986
No 182
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=22.82 E-value=73 Score=27.40 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=25.9
Q ss_pred EEEeecCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHc
Q 011145 386 IYVTENGMDDEENDSSPLHEMLDDKLRVRYFKGYLSAVAQAIKD 429 (492)
Q Consensus 386 I~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~~l~~~~~Ai~d 429 (492)
.+|+|.|++. |..+.+|-+....+++.||..
T Consensus 2 r~~iE~GmG~-------------DlhGqD~TkAA~RAv~DAI~~ 32 (113)
T PF09585_consen 2 RLFIEMGMGN-------------DLHGQDYTKAAVRAVRDAISH 32 (113)
T ss_pred eEEEEecccc-------------cccCCcHHHHHHHHHHHHHhh
Confidence 6899999986 446778999999999999864
No 183
>PRK07094 biotin synthase; Provisional
Probab=22.04 E-value=1.6e+02 Score=29.70 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCCeeeecccc--cccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 78 RYKEDIDLIAKLGFDAYRFSISW--SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~W--sri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
.-+|.++.|+++|++.+-++++= .++...-.. ..+ .+.+.+.|+.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCC---HHHHHHHHHHHHHcCCeecceE
Confidence 45899999999999999888742 233333211 222 5667889999999999765544
No 184
>PTZ00445 p36-lilke protein; Provisional
Probab=21.91 E-value=1.5e+02 Score=28.51 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCChh---------HHHHHHHHHHHHHHcCCcceEEec
Q 011145 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINME---------GITFYNNIIDALLQKGIQPYVTLY 139 (492)
Q Consensus 82 Di~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~---------g~~~y~~~i~~l~~~gi~p~vtL~ 139 (492)
=++++++.|++++=+.+.=.-|---..| .++.. +-.....++.+|+++||.++|..+
T Consensus 34 ~v~~L~~~GIk~Va~D~DnTlI~~HsgG-~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 34 FVDLLNECGIKVIASDFDLTMITKHSGG-YIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHHcCCeEEEecchhhhhhhhccc-ccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 3678999999999888765544311113 33332 334567899999999999888765
No 185
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.77 E-value=7.9e+02 Score=24.32 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=62.6
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCC
Q 011145 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (492)
Q Consensus 77 ~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~ 156 (492)
.+..+-++.+|+.|+. ++++|+.+---|.. + ..+ .+++.++++.+.+.|.. .++|. |+ .|...
T Consensus 114 ~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~-~-~~~---~~~~~~~~~~~~~~Ga~-~i~l~--DT--------~G~~~ 176 (274)
T cd07938 114 ERFEPVAELAKAAGLR-VRGYVSTAFGCPYE-G-EVP---PERVAEVAERLLDLGCD-EISLG--DT--------IGVAT 176 (274)
T ss_pred HHHHHHHHHHHHCCCe-EEEEEEeEecCCCC-C-CCC---HHHHHHHHHHHHHcCCC-EEEEC--CC--------CCccC
Confidence 4455668899999985 77777766555665 5 666 78899999999999986 34443 22 55566
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccEEEEccCccc
Q 011145 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (492)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 189 (492)
|.- +.++.+.+.+++++..-.+.+-|-..+
T Consensus 177 P~~---v~~lv~~l~~~~~~~~i~~H~Hnd~Gl 206 (274)
T cd07938 177 PAQ---VRRLLEAVLERFPDEKLALHFHDTRGQ 206 (274)
T ss_pred HHH---HHHHHHHHHHHCCCCeEEEEECCCCCh
Confidence 543 445566666777654445667776654
No 186
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=21.66 E-value=1.8e+02 Score=26.23 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=39.7
Q ss_pred hhchHHHHHHHHHcCCCeeeeccc-ccccccC-CCCCCCChhHHHHHHHHHHHHHHcC-CcceEEe
Q 011145 76 YHRYKEDIDLIAKLGFDAYRFSIS-WSRIFPD-GLGTKINMEGITFYNNIIDALLQKG-IQPYVTL 138 (492)
Q Consensus 76 y~ry~eDi~l~~~lG~~~~R~si~-Wsri~P~-~~g~~~n~~g~~~y~~~i~~l~~~g-i~p~vtL 138 (492)
...-++.++.|+++|++.+.+|+. ++.-.-+ -.. ..+ .+.+.+.|+.+.++| +.+.+.+
T Consensus 96 ~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~-~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 96 GTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR-GHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred ccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 344478899999999999999985 5432111 101 122 577889999999999 6554443
No 187
>PLN03153 hypothetical protein; Provisional
Probab=21.17 E-value=1.3e+02 Score=32.78 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=40.9
Q ss_pred HHHHcC-CcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHH----HHHHHh--CCCccEEEEccCcccccccccccc
Q 011145 126 ALLQKG-IQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD----TCFASF--GDRVKNWITINEPLQTAVNGYCTG 198 (492)
Q Consensus 126 ~l~~~g-i~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~----~~~~~~--gd~v~~w~t~NEp~~~~~~gy~~G 198 (492)
.+.+.| +.|+|+||||+.=.-+ |-+-...+.++.|..=|+ .++.+. +|+...|... ...||..-
T Consensus 326 G~les~p~~P~vSlHH~~~~~p~---fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~ 396 (537)
T PLN03153 326 GLLSSHPIAPFVSIHHVEAVDPF---YPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQ 396 (537)
T ss_pred hHhhcCCCCCceeeeeccccccc---cCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEE
Confidence 346766 9999999999971111 112234466777665442 233444 5666677654 55788776
Q ss_pred ccCCC
Q 011145 199 IFAPG 203 (492)
Q Consensus 199 ~~~pg 203 (492)
.++-+
T Consensus 397 ~y~~~ 401 (537)
T PLN03153 397 VFPSI 401 (537)
T ss_pred EecCC
Confidence 66554
No 188
>PRK09936 hypothetical protein; Provisional
Probab=21.10 E-value=4.5e+02 Score=26.55 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=44.2
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhh
Q 011145 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (492)
Q Consensus 78 ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 148 (492)
.|++=++.++.+|++++ -+-|++.--+..| .-+ .+..+.++.+.+.||+++|.|+ + =|.|.+
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~yG~~~fg-~~~----g~La~~l~~A~~~Gl~v~vGL~-~-Dp~y~q 100 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRYGDADFG-GQR----GWLAKRLAAAQQAGLKLVVGLY-A-DPEFFM 100 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeeccCCCcc-cch----HHHHHHHHHHHHcCCEEEEccc-C-ChHHHH
Confidence 35666789999999985 4678888221112 122 4678999999999999999997 3 455554
No 189
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=20.56 E-value=5.6e+02 Score=29.20 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=46.4
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCc-ceEEeccCCcchhhhh
Q 011145 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHE 149 (492)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~ 149 (492)
--+.|..+.++|...+|+.+. +.+..+-...+.+.|++.|+. |+|.=.||+.-..+..
T Consensus 112 tv~Qi~~l~~aGceiVRvtv~-------------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a 170 (733)
T PLN02925 112 TVDQVMRIADKGADIVRITVQ-------------GKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRV 170 (733)
T ss_pred HHHHHHHHHHcCCCEEEEcCC-------------CHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHHH
Confidence 346788999999999999764 344456678888889998876 7888889999888764
No 190
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.44 E-value=1.7e+02 Score=28.82 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=38.3
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceE
Q 011145 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (492)
Q Consensus 75 ~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~v 136 (492)
.-.+++.-+++++++|.+.++++-. +..+.....+.-...++.++++++.+.+.||...+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4456888899999999999998521 11111100011223456677888888999997555
No 191
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.38 E-value=2.3e+02 Score=29.17 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=59.3
Q ss_pred cchhhchHHHHHHHHHcCCCeeeecccccccccCCC----C-CCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhh
Q 011145 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL----G-TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (492)
Q Consensus 73 ~d~y~ry~eDi~l~~~lG~~~~R~si~Wsri~P~~~----g-~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 147 (492)
+..+-.=++=++.+.++|++-+-+|+ +.+-|.-. | ..+| +++..++.+.+.+.||.+++ .|.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv--~aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlI------aPv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSV--DALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLI------APVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeec--ccCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEE------eeeec
Confidence 44455667778999999999666665 34555421 2 1344 77888999999999999887 47787
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHH
Q 011145 148 HESMGGWLNKEIVKYFEIYADTCF 171 (492)
Q Consensus 148 ~~~~gg~~~~~~~~~f~~ya~~~~ 171 (492)
-. .|.+-...+.+||+.+-
T Consensus 266 PG-----~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 PG-----VNDDEMPKIIEWAREIG 284 (414)
T ss_pred CC-----cChHHHHHHHHHHHHhC
Confidence 42 56667777888888764
No 192
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=20.32 E-value=3.5e+02 Score=28.74 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=52.5
Q ss_pred hhhchHHHH-----HHHHHcCCCeeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHcCCcceEEeccCCcchhhhh
Q 011145 75 HYHRYKEDI-----DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (492)
Q Consensus 75 ~y~ry~eDi-----~l~~~lG~~~~R~si~Wsri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 149 (492)
.|.+|.+|| ++..+-|++.+|+. -. .|. ..-...-|++.+++|-....+++.-..|.
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF-------DA-----lND--~RNl~~ai~a~kk~G~h~q~~i~YT~sPv---- 152 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF-------DA-----LND--VRNLKTAIKAAKKHGAHVQGTISYTTSPV---- 152 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec-------hh-----ccc--hhHHHHHHHHHHhcCceeEEEEEeccCCc----
Confidence 577778774 78889999999964 21 221 34456788899999999999998655553
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q 011145 150 SMGGWLNKEIVKYFEIYADTCFA 172 (492)
Q Consensus 150 ~~gg~~~~~~~~~f~~ya~~~~~ 172 (492)
.+++.|.++|+.+.+
T Consensus 153 --------Ht~e~yv~~akel~~ 167 (472)
T COG5016 153 --------HTLEYYVELAKELLE 167 (472)
T ss_pred --------ccHHHHHHHHHHHHH
Confidence 457778888877765
No 193
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.23 E-value=1.1e+02 Score=19.01 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCcc
Q 011145 120 YNNIIDALLQKGIQP 134 (492)
Q Consensus 120 y~~~i~~l~~~gi~p 134 (492)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467888889999988
No 194
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=20.20 E-value=2.9e+02 Score=31.38 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=44.3
Q ss_pred HHHHHH----HHHHHHHHcCCcceEEeccCCcchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 011145 116 GITFYN----NIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFA 172 (492)
Q Consensus 116 g~~~y~----~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 172 (492)
++++.+ .+|+.|+++|+..=+...|-.++.-+..+||. .....++--.+|++.|-+
T Consensus 204 Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 204 ELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred hHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 355555 49999999999999999999999999988875 555667766777776654
No 195
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.17 E-value=3e+02 Score=27.00 Aligned_cols=58 Identities=22% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHHHHcC----CCeeeecccccccccCC-CCCCCChhHHHHHHHHHHHHHHcCCcceEEe
Q 011145 80 KEDIDLIAKLG----FDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (492)
Q Consensus 80 ~eDi~l~~~lG----~~~~R~si~Wsri~P~~-~g~~~n~~g~~~y~~~i~~l~~~gi~p~vtL 138 (492)
.+|++++.+.| ++.+|+.++-|.+.-.. .+ .=-++.++-..+.++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLK-KTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 78999999999 99999987665553222 12 1123457778899999999999866544
No 196
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=20.16 E-value=4.1e+02 Score=27.31 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCChhHHHHHHHHHHHHHHcCCcce-EEeccCCcchhhhhhcCCCCC
Q 011145 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (492)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~Ws-ri~P~~~g~~~n~~g~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~~ 156 (492)
++.+++|+++|+|-+-+++ +-+ .+...- |...+ .+-..+.|+.+++.|+..+ +.|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~~---~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIHS---QKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 6899999999999666665 332 222221 31233 4566788999999999855 5553 46663
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCccEEEEccCcc
Q 011145 157 KEIVKYFEIYADTCFASFG-DRVKNWITINEPL 188 (492)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~ 188 (492)
++.+.|.+-.+.+.+ .+ +.|..+...=||+
T Consensus 162 -qt~~~~~~~l~~~~~-l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 -DNKKLLKEELKLAKE-LPINHLSAYSLTIEEN 192 (350)
T ss_pred -CCHHHHHHHHHHHHh-cCCCEEEeccceecCC
Confidence 234455555555544 33 3444444433444
Done!