BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011146
         (492 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 35.4 bits (80), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 28/141 (19%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGH--NLPWKL---------------KQRTNKEVRKKVYI 106
           + C  C K F R  +L  H+R H    P+K                 QRT+    +K Y 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH--TGEKPYK 79

Query: 107 CPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKI-CGTR 165
           CPE  C      ++      ++ H     G            ++  +  +AH +   G +
Sbjct: 80  CPE--C-----GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132

Query: 166 EYRC-DCGTLFSRKDSFITHR 185
            Y+C +CG  FSR+D+  TH+
Sbjct: 133 PYKCPECGKSFSREDNLHTHQ 153



 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 22/124 (17%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD 123
           + C  C K F +  NL+ H+R H               +K Y CPE  C      ++   
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTH-------------TGEKPYACPE--C-----GKSFSQ 117

Query: 124 LTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSF 181
           L  ++ H     G            ++ + +   H +   G + Y+C +CG  FSR+D+ 
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177

Query: 182 ITHR 185
             H+
Sbjct: 178 NVHQ 181


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
          Nmr, 25 Structures
          Length = 60

 Score = 31.6 bits (70), Expect = 0.97,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 64 FLCEICNKGFQRDQNLQLHRRGH 86
          F+CE+C + F R ++L+ H R H
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSH 25


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 31.6 bits (70), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 64 FLCEICNKGFQRDQNLQLHRRGH 86
          F+CE+C + F R ++L+ H R H
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSH 25


>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 30.8 bits (68), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 64 FLCEICNKGFQRDQNLQLHRRGH 86
          F+CE+C + F R + L+ H R H
Sbjct: 3  FVCEVCTRAFARQEYLKRHYRSH 25


>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 30.8 bits (68), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 64 FLCEICNKGFQRDQNLQLHRRGH 86
          F+CE+C + F R + L+ H R H
Sbjct: 3  FVCEVCTRAFARQEALKRHYRSH 25


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
          Zinc-Binding Domain Of The Zinc Finger Protein 64,
          Isoforms 1 And 2
          Length = 96

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 66 CEICNKGFQRDQNLQLHRRGHN--LPWKLK 93
          CE+C K F R   L+ H R H    P+K K
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCK 40


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 169 CDCGTLFSRKDSFITHR 185
           C+CG +FSRKD  ++H+
Sbjct: 16  CECGKVFSRKDQLVSHQ 32


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 29.3 bits (64), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 64 FLCEICNKGFQRDQNLQLHRRGH 86
          + CE C KG+ R  NL +H+R H
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVH 35


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 28.5 bits (62), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 18/69 (26%)

Query: 67  EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTG 126
           E C K + R +NL+ H R H               +K Y+C  + C     S+A  + + 
Sbjct: 73  EGCRKSYSRLENLKTHLRSH-------------TGEKPYMCEHEGC-----SKAFSNASD 114

Query: 127 IKKHFSRKH 135
             KH +R H
Sbjct: 115 RAKHQNRTH 123


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
          Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 28.5 bits (62), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 64 FLCEICNKGFQRDQNLQLHRRGH 86
          F C +CN+ F R  +L LH + H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 28.5 bits (62), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHN--LPWKLKQRTNKEVRKK 103
           F C +C + F+R   L+LH   H   +P+K    + + ++KK
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,318,100
Number of Sequences: 62578
Number of extensions: 411897
Number of successful extensions: 721
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 31
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)