Query 011147
Match_columns 492
No_of_seqs 245 out of 2099
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:38:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11573 hypothetical protein; 100.0 4.4E-62 9.4E-67 514.4 30.9 355 24-441 2-385 (413)
2 TIGR03520 GldE gliding motilit 100.0 1.5E-60 3.2E-65 502.4 34.6 353 21-440 2-388 (408)
3 COG4536 CorB Putative Mg2+ and 100.0 7.8E-62 1.7E-66 487.9 21.8 368 12-441 1-397 (423)
4 COG1253 TlyC Hemolysins and re 100.0 8.4E-57 1.8E-61 477.1 33.6 365 13-441 3-403 (429)
5 KOG2118 Predicted membrane pro 100.0 2.1E-39 4.5E-44 347.4 5.3 333 4-391 3-338 (498)
6 PRK15094 magnesium/cobalt effl 100.0 1.4E-31 2.9E-36 270.9 15.1 228 152-441 21-263 (292)
7 COG4535 CorC Putative Mg2+ and 100.0 3.7E-31 8.1E-36 252.1 9.1 230 150-441 19-263 (293)
8 PF01595 DUF21: Domain of unkn 100.0 2.3E-27 4.9E-32 222.9 21.7 169 16-192 2-183 (183)
9 TIGR01302 IMP_dehydrog inosine 99.3 2.3E-11 5E-16 130.5 14.2 151 164-380 43-201 (450)
10 TIGR00400 mgtE Mg2+ transporte 99.3 3.1E-11 6.7E-16 129.6 14.1 154 165-381 89-253 (449)
11 COG2524 Predicted transcriptio 99.3 2.2E-11 4.7E-16 118.7 9.7 130 196-382 163-293 (294)
12 COG3620 Predicted transcriptio 99.0 1.2E-09 2.5E-14 99.8 7.7 141 185-381 40-185 (187)
13 COG3448 CBS-domain-containing 99.0 3.1E-08 6.8E-13 98.6 17.6 164 165-381 202-373 (382)
14 COG4109 Predicted transcriptio 99.0 3E-09 6.5E-14 107.9 10.2 130 192-379 170-305 (432)
15 PRK05567 inosine 5'-monophosph 98.9 2.8E-08 6.1E-13 107.8 14.4 150 164-380 50-205 (486)
16 cd04641 CBS_pair_28 The CBS do 98.8 8E-08 1.7E-12 83.1 11.3 117 216-377 2-119 (120)
17 cd04623 CBS_pair_10 The CBS do 98.8 7.2E-08 1.6E-12 81.5 10.6 110 216-377 2-112 (113)
18 cd04630 CBS_pair_17 The CBS do 98.7 1.8E-07 3.9E-12 80.0 11.1 111 216-377 2-113 (114)
19 cd04590 CBS_pair_CorC_HlyC_ass 98.7 1.3E-07 2.8E-12 80.1 9.7 110 215-378 1-111 (111)
20 cd04624 CBS_pair_11 The CBS do 98.7 1.5E-07 3.2E-12 79.9 9.9 109 217-378 3-112 (112)
21 cd04627 CBS_pair_14 The CBS do 98.7 2.6E-07 5.6E-12 80.3 11.3 118 216-376 2-121 (123)
22 PRK10892 D-arabinose 5-phospha 98.7 1.2E-07 2.7E-12 97.3 10.6 123 203-378 200-323 (326)
23 cd04618 CBS_pair_5 The CBS dom 98.7 1.2E-07 2.6E-12 80.2 8.8 94 216-377 2-97 (98)
24 cd04593 CBS_pair_EriC_assoc_ba 98.6 2.3E-07 5E-12 79.4 10.1 109 217-377 3-114 (115)
25 PRK11543 gutQ D-arabinose 5-ph 98.6 1.2E-07 2.6E-12 97.1 9.5 121 204-377 196-317 (321)
26 PRK01862 putative voltage-gate 98.6 1.1E-07 2.4E-12 105.2 9.8 126 202-381 444-572 (574)
27 cd04639 CBS_pair_26 The CBS do 98.6 3.6E-07 7.7E-12 77.4 10.3 108 216-377 2-110 (111)
28 cd04803 CBS_pair_15 The CBS do 98.6 3E-07 6.5E-12 79.2 10.0 119 216-377 2-121 (122)
29 cd04605 CBS_pair_MET2_assoc Th 98.6 5.1E-07 1.1E-11 76.3 11.1 106 216-377 3-109 (110)
30 cd04631 CBS_pair_18 The CBS do 98.6 3.1E-07 6.8E-12 79.4 9.9 120 216-377 2-124 (125)
31 cd04619 CBS_pair_6 The CBS dom 98.6 4.4E-07 9.6E-12 77.8 10.7 111 216-377 2-113 (114)
32 cd04642 CBS_pair_29 The CBS do 98.6 4.2E-07 9.1E-12 79.4 10.7 122 216-377 2-125 (126)
33 cd04596 CBS_pair_DRTGG_assoc T 98.6 5E-07 1.1E-11 76.5 10.4 105 215-377 2-107 (108)
34 cd04600 CBS_pair_HPP_assoc Thi 98.6 4.9E-07 1.1E-11 78.1 10.2 117 216-377 3-123 (124)
35 TIGR01137 cysta_beta cystathio 98.6 2.8E-07 6.1E-12 98.9 10.3 126 196-379 328-453 (454)
36 cd04801 CBS_pair_M50_like This 98.5 3.7E-07 8E-12 78.0 9.0 110 216-377 2-113 (114)
37 cd04637 CBS_pair_24 The CBS do 98.5 7E-07 1.5E-11 77.0 10.7 118 216-377 2-121 (122)
38 cd04603 CBS_pair_KefB_assoc Th 98.5 1.1E-06 2.5E-11 75.0 11.9 108 216-377 2-110 (111)
39 cd04800 CBS_pair_CAP-ED_DUF294 98.5 6E-07 1.3E-11 76.0 10.1 108 216-377 2-110 (111)
40 cd04588 CBS_pair_CAP-ED_DUF294 98.5 6.6E-07 1.4E-11 75.6 10.1 107 216-377 2-109 (110)
41 cd04613 CBS_pair_SpoIVFB_EriC_ 98.5 5.1E-07 1.1E-11 76.4 9.5 110 216-377 2-113 (114)
42 cd04604 CBS_pair_KpsF_GutQ_ass 98.5 5.9E-07 1.3E-11 76.1 9.7 110 216-377 3-113 (114)
43 cd04611 CBS_pair_PAS_GGDEF_DUF 98.5 7.7E-07 1.7E-11 75.1 10.3 108 216-377 2-110 (111)
44 cd04626 CBS_pair_13 The CBS do 98.5 6.2E-07 1.3E-11 76.1 9.8 108 216-377 2-110 (111)
45 cd04595 CBS_pair_DHH_polyA_Pol 98.5 6.8E-07 1.5E-11 75.7 9.9 106 216-377 3-109 (110)
46 cd04635 CBS_pair_22 The CBS do 98.5 7.6E-07 1.7E-11 76.7 10.3 119 216-377 2-121 (122)
47 cd04629 CBS_pair_16 The CBS do 98.5 7.8E-07 1.7E-11 75.5 9.6 111 216-377 2-113 (114)
48 cd04609 CBS_pair_PALP_assoc2 T 98.5 9.8E-07 2.1E-11 74.2 10.0 43 216-261 2-44 (110)
49 cd04622 CBS_pair_9 The CBS dom 98.5 1.3E-06 2.7E-11 74.1 10.5 110 216-377 2-112 (113)
50 cd04615 CBS_pair_2 The CBS dom 98.5 1.3E-06 2.8E-11 74.2 10.6 109 217-377 3-112 (113)
51 cd02205 CBS_pair The CBS domai 98.5 1.7E-06 3.8E-11 71.8 11.0 110 216-377 2-112 (113)
52 cd04589 CBS_pair_CAP-ED_DUF294 98.5 1.2E-06 2.7E-11 74.2 10.2 108 216-377 2-110 (111)
53 cd04591 CBS_pair_EriC_assoc_eu 98.5 1.5E-06 3.3E-11 74.0 10.7 100 215-377 2-104 (105)
54 cd04608 CBS_pair_PALP_assoc Th 98.5 5.8E-07 1.2E-11 79.0 8.2 49 216-266 3-51 (124)
55 cd04621 CBS_pair_8 The CBS dom 98.5 1E-06 2.3E-11 78.6 9.9 46 216-263 2-47 (135)
56 cd04607 CBS_pair_NTP_transfera 98.5 1.6E-06 3.4E-11 73.9 10.6 108 217-377 4-112 (113)
57 PRK07807 inosine 5-monophospha 98.5 9.8E-07 2.1E-11 95.5 11.4 119 202-380 86-205 (479)
58 cd04612 CBS_pair_SpoIVFB_EriC_ 98.5 1.6E-06 3.4E-11 73.1 10.3 108 216-377 2-110 (111)
59 cd04599 CBS_pair_GGDEF_assoc2 98.5 1.1E-06 2.5E-11 73.4 9.4 103 216-378 2-105 (105)
60 cd04636 CBS_pair_23 The CBS do 98.4 1.3E-06 2.7E-11 77.0 10.0 46 216-263 2-47 (132)
61 cd04643 CBS_pair_30 The CBS do 98.4 2.3E-06 4.9E-11 72.9 11.4 113 216-377 2-115 (116)
62 cd04610 CBS_pair_ParBc_assoc T 98.4 2E-06 4.4E-11 72.1 10.5 103 216-377 3-106 (107)
63 cd04587 CBS_pair_CAP-ED_DUF294 98.4 2E-06 4.4E-11 72.8 10.4 109 216-376 2-111 (113)
64 cd04640 CBS_pair_27 The CBS do 98.4 1.2E-06 2.5E-11 76.7 9.1 121 216-377 2-125 (126)
65 PLN02274 inosine-5'-monophosph 98.4 1.7E-06 3.7E-11 94.3 12.4 155 165-380 64-222 (505)
66 cd04614 CBS_pair_1 The CBS dom 98.4 2.6E-06 5.6E-11 71.5 10.8 93 216-377 2-95 (96)
67 cd04602 CBS_pair_IMPDH_2 This 98.4 1.9E-06 4.2E-11 73.7 10.3 108 216-377 3-113 (114)
68 cd04586 CBS_pair_BON_assoc Thi 98.4 1.4E-06 2.9E-11 77.1 9.5 130 216-377 3-134 (135)
69 cd04620 CBS_pair_7 The CBS dom 98.4 1.7E-06 3.6E-11 73.9 9.7 111 216-377 2-114 (115)
70 cd04617 CBS_pair_4 The CBS dom 98.4 1.7E-06 3.6E-11 74.7 9.6 112 216-377 2-117 (118)
71 cd04585 CBS_pair_ACT_assoc2 Th 98.4 2.7E-06 5.8E-11 72.7 10.7 119 216-377 2-121 (122)
72 cd04632 CBS_pair_19 The CBS do 98.4 2.5E-06 5.5E-11 74.4 10.7 121 216-377 2-127 (128)
73 cd04583 CBS_pair_ABC_OpuCA_ass 98.4 4.9E-06 1.1E-10 69.9 11.6 105 216-377 3-108 (109)
74 cd04601 CBS_pair_IMPDH This cd 98.4 3.4E-06 7.3E-11 71.0 10.4 106 216-377 3-109 (110)
75 cd04802 CBS_pair_3 The CBS dom 98.4 3.2E-06 7E-11 71.6 10.3 109 216-377 2-111 (112)
76 cd04638 CBS_pair_25 The CBS do 98.4 3.8E-06 8.3E-11 70.7 10.4 103 216-377 2-105 (106)
77 cd04582 CBS_pair_ABC_OpuCA_ass 98.4 3.4E-06 7.3E-11 70.7 9.9 103 216-377 2-105 (106)
78 cd04633 CBS_pair_20 The CBS do 98.3 3.4E-06 7.3E-11 72.5 9.6 117 216-377 2-120 (121)
79 cd04594 CBS_pair_EriC_assoc_ar 98.3 5.1E-06 1.1E-10 70.0 10.4 98 219-377 5-103 (104)
80 cd04606 CBS_pair_Mg_transporte 98.3 3.2E-06 7E-11 71.6 9.1 102 220-379 2-109 (109)
81 cd04584 CBS_pair_ACT_assoc Thi 98.3 5.6E-06 1.2E-10 71.0 10.5 118 216-377 2-120 (121)
82 PTZ00314 inosine-5'-monophosph 98.3 3.6E-06 7.8E-11 91.6 11.3 150 165-379 60-217 (495)
83 PRK07107 inosine 5-monophospha 98.3 2.7E-06 5.8E-11 92.7 9.9 109 218-379 108-219 (502)
84 cd04634 CBS_pair_21 The CBS do 98.2 8.8E-06 1.9E-10 73.1 9.9 45 216-263 2-46 (143)
85 PF00571 CBS: CBS domain CBS d 98.2 2.7E-06 5.8E-11 64.3 5.1 54 207-264 1-54 (57)
86 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 9.2E-06 2E-10 88.0 10.9 119 202-381 85-204 (475)
87 cd04625 CBS_pair_12 The CBS do 98.1 2.6E-05 5.6E-10 66.0 10.2 109 216-377 2-111 (112)
88 cd04598 CBS_pair_GGDEF_assoc T 98.1 1.3E-05 2.8E-10 68.6 8.3 111 217-377 3-118 (119)
89 COG2239 MgtE Mg/Co/Ni transpor 98.1 3.5E-05 7.5E-10 82.7 13.3 135 187-381 114-254 (451)
90 TIGR00393 kpsF KpsF/GutQ famil 98.0 1.6E-05 3.5E-10 79.1 9.1 113 205-371 155-268 (268)
91 KOG0474 Cl- channel CLC-7 and 98.0 1.5E-05 3.2E-10 86.5 7.2 148 202-381 579-749 (762)
92 COG0517 FOG: CBS domain [Gener 97.9 7.8E-05 1.7E-09 63.3 9.8 113 208-376 2-117 (117)
93 COG2905 Predicted signal-trans 97.8 5.6E-05 1.2E-09 81.5 8.3 126 201-381 145-271 (610)
94 PRK14869 putative manganese-de 97.8 0.0002 4.2E-09 79.0 12.8 60 204-267 67-126 (546)
95 PF00571 CBS: CBS domain CBS d 97.3 0.00057 1.2E-08 51.4 5.3 39 337-381 18-57 (57)
96 KOG1764 5'-AMP-activated prote 97.2 0.0016 3.5E-08 68.8 9.9 120 216-381 238-360 (381)
97 cd04801 CBS_pair_M50_like This 96.9 0.0014 3.1E-08 55.6 5.1 56 204-261 56-111 (114)
98 cd04604 CBS_pair_KpsF_GutQ_ass 96.8 0.002 4.4E-08 54.3 5.4 58 200-261 54-111 (114)
99 cd04603 CBS_pair_KefB_assoc Th 96.8 0.0016 3.5E-08 55.4 4.8 54 204-261 55-108 (111)
100 cd04617 CBS_pair_4 The CBS dom 96.8 0.002 4.3E-08 55.4 5.3 59 202-261 55-115 (118)
101 cd04619 CBS_pair_6 The CBS dom 96.5 0.003 6.6E-08 53.8 4.4 56 203-262 57-112 (114)
102 cd04592 CBS_pair_EriC_assoc_eu 96.5 0.017 3.6E-07 51.7 9.0 48 216-265 2-49 (133)
103 cd04623 CBS_pair_10 The CBS do 96.4 0.0049 1.1E-07 51.7 5.0 53 204-261 58-110 (113)
104 cd04640 CBS_pair_27 The CBS do 96.4 0.0028 6.1E-08 55.1 3.6 58 203-261 62-123 (126)
105 COG3448 CBS-domain-containing 96.4 0.0058 1.3E-07 61.7 6.1 69 198-270 308-376 (382)
106 KOG0475 Cl- channel CLC-3 and 96.3 0.022 4.7E-07 62.7 10.2 62 204-266 542-608 (696)
107 cd04597 CBS_pair_DRTGG_assoc2 96.3 0.0065 1.4E-07 52.5 5.2 50 205-258 58-107 (113)
108 cd04585 CBS_pair_ACT_assoc2 Th 96.3 0.006 1.3E-07 51.8 4.9 56 202-261 64-119 (122)
109 PRK07107 inosine 5-monophospha 96.2 0.0072 1.6E-07 66.2 5.9 58 202-261 158-215 (502)
110 cd04613 CBS_pair_SpoIVFB_EriC_ 96.2 0.0097 2.1E-07 49.9 5.4 55 204-261 57-111 (114)
111 cd04625 CBS_pair_12 The CBS do 96.2 0.0099 2.2E-07 50.0 5.5 53 204-261 57-109 (112)
112 cd04621 CBS_pair_8 The CBS dom 96.2 0.0077 1.7E-07 53.6 4.9 54 202-260 78-131 (135)
113 cd04618 CBS_pair_5 The CBS dom 96.1 0.0097 2.1E-07 50.0 5.2 44 217-261 52-95 (98)
114 cd04636 CBS_pair_23 The CBS do 96.1 0.0078 1.7E-07 52.7 4.7 54 203-261 76-129 (132)
115 cd04630 CBS_pair_17 The CBS do 96.1 0.0075 1.6E-07 51.2 4.4 54 203-261 58-111 (114)
116 cd04607 CBS_pair_NTP_transfera 96.1 0.0098 2.1E-07 50.3 4.9 54 204-261 57-110 (113)
117 cd04802 CBS_pair_3 The CBS dom 96.0 0.012 2.5E-07 49.6 5.1 54 203-261 56-109 (112)
118 cd04633 CBS_pair_20 The CBS do 96.0 0.0093 2E-07 50.9 4.4 55 202-261 64-118 (121)
119 cd04582 CBS_pair_ABC_OpuCA_ass 96.0 0.013 2.8E-07 48.8 5.1 51 206-260 52-102 (106)
120 PRK10892 D-arabinose 5-phospha 95.9 0.014 3.1E-07 60.0 6.4 57 201-262 265-321 (326)
121 cd04610 CBS_pair_ParBc_assoc T 95.9 0.011 2.5E-07 49.1 4.7 54 204-261 51-104 (107)
122 cd04593 CBS_pair_EriC_assoc_ba 95.9 0.013 2.7E-07 49.8 4.9 54 205-261 58-112 (115)
123 cd04587 CBS_pair_CAP-ED_DUF294 95.9 0.014 3E-07 49.1 5.1 52 205-260 58-109 (113)
124 cd04620 CBS_pair_7 The CBS dom 95.9 0.012 2.5E-07 49.9 4.6 55 204-262 57-113 (115)
125 cd04600 CBS_pair_HPP_assoc Thi 95.8 0.012 2.7E-07 50.4 4.6 57 202-262 66-122 (124)
126 PLN02274 inosine-5'-monophosph 95.8 0.012 2.7E-07 64.4 5.7 61 203-265 161-221 (505)
127 cd04584 CBS_pair_ACT_assoc Thi 95.8 0.0097 2.1E-07 50.7 3.9 55 201-260 63-117 (121)
128 KOG2550 IMP dehydrogenase/GMP 95.8 0.031 6.6E-07 58.8 8.1 152 164-378 71-226 (503)
129 smart00116 CBS Domain in cysta 95.8 0.023 5E-07 39.3 5.0 42 217-260 2-43 (49)
130 COG0517 FOG: CBS domain [Gener 95.8 0.024 5.1E-07 47.9 6.0 52 206-260 63-115 (117)
131 PRK10070 glycine betaine trans 95.7 0.11 2.4E-06 55.5 12.1 120 205-381 274-394 (400)
132 cd04601 CBS_pair_IMPDH This cd 95.7 0.018 3.8E-07 48.1 5.0 54 204-261 53-107 (110)
133 cd04615 CBS_pair_2 The CBS dom 95.7 0.017 3.6E-07 48.7 4.7 54 203-260 56-109 (113)
134 cd04622 CBS_pair_9 The CBS dom 95.6 0.019 4E-07 48.3 4.9 55 203-261 56-110 (113)
135 cd04599 CBS_pair_GGDEF_assoc2 95.6 0.018 3.8E-07 47.7 4.7 52 204-260 50-101 (105)
136 cd04586 CBS_pair_BON_assoc Thi 95.6 0.013 2.8E-07 51.5 3.8 55 202-261 78-132 (135)
137 cd04626 CBS_pair_13 The CBS do 95.6 0.018 4E-07 48.3 4.6 52 204-260 56-107 (111)
138 cd04596 CBS_pair_DRTGG_assoc T 95.6 0.019 4.1E-07 48.2 4.6 54 203-260 51-104 (108)
139 cd04589 CBS_pair_CAP-ED_DUF294 95.5 0.02 4.2E-07 48.2 4.6 53 203-260 55-107 (111)
140 PRK11543 gutQ D-arabinose 5-ph 95.5 0.024 5.2E-07 58.0 6.1 55 204-262 262-316 (321)
141 cd04629 CBS_pair_16 The CBS do 95.5 0.019 4E-07 48.4 4.5 53 204-261 59-111 (114)
142 PRK01862 putative voltage-gate 95.5 0.025 5.4E-07 62.9 6.6 59 204-265 511-570 (574)
143 cd04627 CBS_pair_14 The CBS do 95.5 0.026 5.7E-07 48.6 5.3 48 208-259 71-118 (123)
144 cd04602 CBS_pair_IMPDH_2 This 95.4 0.022 4.8E-07 48.3 4.7 54 205-260 57-110 (114)
145 cd04803 CBS_pair_15 The CBS do 95.4 0.024 5.2E-07 48.4 4.9 56 202-261 64-119 (122)
146 cd04631 CBS_pair_18 The CBS do 95.4 0.021 4.5E-07 49.0 4.5 56 202-261 67-122 (125)
147 cd04606 CBS_pair_Mg_transporte 95.3 0.026 5.6E-07 47.5 4.7 55 204-262 52-106 (109)
148 cd04595 CBS_pair_DHH_polyA_Pol 95.3 0.027 5.9E-07 47.2 4.8 54 203-261 54-107 (110)
149 PTZ00314 inosine-5'-monophosph 95.3 0.023 5E-07 62.2 5.4 58 203-262 157-214 (495)
150 cd04594 CBS_pair_EriC_assoc_ar 95.3 0.026 5.6E-07 47.2 4.5 51 205-260 50-100 (104)
151 cd04641 CBS_pair_28 The CBS do 95.3 0.032 7E-07 47.8 5.2 50 208-261 68-117 (120)
152 cd04635 CBS_pair_22 The CBS do 95.3 0.024 5.1E-07 48.4 4.3 55 203-261 65-119 (122)
153 cd04632 CBS_pair_19 The CBS do 95.2 0.027 5.8E-07 48.8 4.6 56 203-261 69-125 (128)
154 TIGR00400 mgtE Mg2+ transporte 95.2 0.028 6E-07 60.8 5.5 61 203-267 193-253 (449)
155 cd04611 CBS_pair_PAS_GGDEF_DUF 95.1 0.035 7.5E-07 46.4 4.9 55 203-261 54-108 (111)
156 cd04800 CBS_pair_CAP-ED_DUF294 95.1 0.03 6.6E-07 46.9 4.5 52 204-260 56-107 (111)
157 cd04583 CBS_pair_ABC_OpuCA_ass 95.1 0.035 7.7E-07 46.1 4.8 52 205-260 54-105 (109)
158 cd04614 CBS_pair_1 The CBS dom 94.9 0.035 7.5E-07 46.2 4.2 43 217-261 51-93 (96)
159 cd04639 CBS_pair_26 The CBS do 94.9 0.039 8.6E-07 46.2 4.5 52 205-260 56-107 (111)
160 cd04612 CBS_pair_SpoIVFB_EriC_ 94.8 0.06 1.3E-06 44.9 5.4 53 205-261 56-108 (111)
161 TIGR01186 proV glycine betaine 94.7 0.39 8.5E-06 50.6 12.3 106 219-381 254-359 (363)
162 smart00116 CBS Domain in cysta 94.7 0.068 1.5E-06 36.9 4.7 37 337-379 11-48 (49)
163 PRK14869 putative manganese-de 94.7 0.038 8.2E-07 61.1 5.0 59 203-264 244-302 (546)
164 cd04643 CBS_pair_30 The CBS do 94.7 0.039 8.5E-07 46.5 4.0 53 203-261 61-113 (116)
165 COG2905 Predicted signal-trans 94.6 0.042 9E-07 60.0 4.9 70 185-261 193-265 (610)
166 cd04634 CBS_pair_21 The CBS do 94.6 0.043 9.4E-07 49.0 4.3 54 203-261 87-140 (143)
167 cd04637 CBS_pair_24 The CBS do 94.6 0.046 1E-06 46.7 4.3 54 204-261 66-119 (122)
168 COG2524 Predicted transcriptio 94.5 0.052 1.1E-06 54.0 4.7 56 203-262 232-287 (294)
169 cd04590 CBS_pair_CorC_HlyC_ass 94.4 0.052 1.1E-06 45.4 4.1 50 206-260 58-107 (111)
170 cd04588 CBS_pair_CAP-ED_DUF294 94.2 0.077 1.7E-06 44.3 4.8 53 205-261 55-107 (110)
171 KOG1764 5'-AMP-activated prote 94.2 0.29 6.3E-06 51.9 10.1 129 211-381 158-287 (381)
172 TIGR00393 kpsF KpsF/GutQ famil 94.2 0.061 1.3E-06 53.4 4.8 51 203-257 218-268 (268)
173 PRK07807 inosine 5-monophospha 94.1 0.066 1.4E-06 58.4 5.3 55 205-263 148-202 (479)
174 cd04642 CBS_pair_29 The CBS do 94.0 0.09 1.9E-06 45.5 4.9 44 215-260 79-122 (126)
175 cd04592 CBS_pair_EriC_assoc_eu 94.0 0.11 2.3E-06 46.5 5.5 39 337-381 12-51 (133)
176 cd04624 CBS_pair_11 The CBS do 94.0 0.084 1.8E-06 44.2 4.5 53 204-260 56-108 (112)
177 cd04591 CBS_pair_EriC_assoc_eu 94.0 0.1 2.2E-06 44.0 5.1 47 210-261 56-102 (105)
178 TIGR03520 GldE gliding motilit 93.9 9.9 0.00021 40.7 21.2 60 204-268 254-313 (408)
179 TIGR01303 IMP_DH_rel_1 IMP deh 93.9 0.076 1.6E-06 57.9 5.2 54 205-262 146-199 (475)
180 cd04605 CBS_pair_MET2_assoc Th 93.8 0.11 2.4E-06 43.3 5.0 51 206-260 56-106 (110)
181 cd04598 CBS_pair_GGDEF_assoc T 93.2 0.13 2.8E-06 43.6 4.5 54 203-260 59-115 (119)
182 TIGR01302 IMP_dehydrog inosine 92.9 0.14 3E-06 55.5 5.1 58 203-263 141-198 (450)
183 cd04638 CBS_pair_25 The CBS do 92.5 0.19 4.2E-06 41.7 4.4 51 205-260 52-102 (106)
184 cd04597 CBS_pair_DRTGG_assoc2 92.3 0.2 4.3E-06 43.1 4.4 35 337-377 77-112 (113)
185 cd04608 CBS_pair_PALP_assoc Th 91.7 0.4 8.8E-06 41.7 5.8 39 337-381 13-52 (124)
186 cd02205 CBS_pair The CBS domai 91.7 0.25 5.5E-06 40.3 4.2 51 207-261 60-110 (113)
187 PRK05567 inosine 5'-monophosph 91.2 0.3 6.4E-06 53.4 5.3 56 204-262 146-201 (486)
188 PRK15094 magnesium/cobalt effl 90.1 0.36 7.8E-06 49.3 4.4 60 206-270 134-193 (292)
189 cd04609 CBS_pair_PALP_assoc2 T 88.7 0.77 1.7E-05 37.9 4.8 38 337-381 12-50 (110)
190 COG3620 Predicted transcriptio 87.6 0.98 2.1E-05 42.2 5.0 59 200-265 125-183 (187)
191 KOG2550 IMP dehydrogenase/GMP 86.4 0.79 1.7E-05 48.6 4.1 69 187-263 157-225 (503)
192 COG2239 MgtE Mg/Co/Ni transpor 84.8 1.2 2.6E-05 48.4 4.7 58 202-263 193-250 (451)
193 TIGR01186 proV glycine betaine 83.3 2 4.3E-05 45.3 5.5 53 205-262 302-354 (363)
194 TIGR01137 cysta_beta cystathio 80.8 2.9 6.2E-05 45.0 5.8 39 337-381 354-393 (454)
195 COG4175 ProV ABC-type proline/ 79.5 6.4 0.00014 41.0 7.3 124 191-381 260-384 (386)
196 COG4109 Predicted transcriptio 77.6 3.3 7.1E-05 43.3 4.7 93 168-269 209-309 (432)
197 PRK10070 glycine betaine trans 73.6 5.6 0.00012 42.6 5.4 57 204-265 336-392 (400)
198 PRK11573 hypothetical protein; 58.2 20 0.00043 38.5 5.9 53 216-270 263-315 (413)
199 KOG3768 DEAD box RNA helicase 56.0 24 0.00051 39.4 5.9 53 384-445 628-681 (888)
200 KOG2118 Predicted membrane pro 55.6 18 0.0004 39.9 5.2 49 362-410 397-445 (498)
201 PF03842 Silic_transp: Silicon 52.9 16 0.00035 38.9 4.0 145 12-161 40-207 (512)
202 PF14147 Spore_YhaL: Sporulati 49.2 16 0.00034 27.7 2.3 19 12-32 2-20 (52)
203 COG1125 OpuBA ABC-type proline 47.2 27 0.00059 35.5 4.4 33 340-378 275-308 (309)
204 TIGR03415 ABC_choXWV_ATP choli 44.4 27 0.00058 37.2 4.2 47 215-265 333-379 (382)
205 TIGR03415 ABC_choXWV_ATP choli 41.5 36 0.00078 36.2 4.6 38 337-381 344-381 (382)
206 PF01595 DUF21: Domain of unkn 41.0 2.8E+02 0.0062 25.3 15.3 10 147-156 133-142 (183)
207 PF03563 Bunya_G2: Bunyavirus 34.9 1.2E+02 0.0025 30.8 6.6 25 134-158 210-234 (285)
208 KOG0476 Cl- channel CLC-2 and 34.7 37 0.0008 39.1 3.5 64 203-269 586-650 (931)
209 PF15284 PAGK: Phage-encoded v 32.1 57 0.0012 25.6 3.1 24 17-40 7-30 (61)
210 COG1253 TlyC Hemolysins and re 30.6 7E+02 0.015 26.7 13.0 71 193-268 259-330 (429)
211 TIGR00811 sit silicon transpor 28.4 76 0.0016 34.6 4.4 53 110-164 369-429 (545)
212 PHA00728 hypothetical protein 26.3 51 0.0011 29.4 2.2 54 189-247 35-88 (151)
213 KOG0058 Peptide exporter, ABC 25.2 1.1E+03 0.024 27.4 15.5 50 106-155 260-309 (716)
214 PF02419 PsbL: PsbL protein; 25.0 1.1E+02 0.0023 21.6 3.1 20 11-30 16-35 (37)
215 PF01036 Bac_rhodopsin: Bacter 23.2 6.8E+02 0.015 24.1 11.6 42 110-153 141-183 (222)
216 CHL00038 psbL photosystem II p 22.8 1.1E+02 0.0024 21.6 2.9 20 11-30 17-36 (38)
217 PF05198 IF3_N: Translation in 22.7 1E+02 0.0022 25.2 3.2 23 351-379 15-37 (76)
218 PF14163 SieB: Superinfection 22.5 2.6E+02 0.0057 25.3 6.4 37 187-238 78-114 (151)
219 PHA02975 hypothetical protein; 21.3 1.6E+02 0.0034 23.7 3.9 23 8-31 39-61 (69)
No 1
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-62 Score=514.36 Aligned_cols=355 Identities=18% Similarity=0.282 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH----HHH---
Q 011147 24 VSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLD----ALL--- 96 (492)
Q Consensus 24 lllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~~~----~l~--- 96 (492)
+++||||||+|+|++|+++.+|+.++++|++ +|++++++++||+++|+|+|+||+++|.+.+.+.. .++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5789999999999999999999999999875 68899999999999999999999999987765432 223
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---hhhCCCCc----cccCHH
Q 011147 97 PAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLD---WLLGKRHS----ALLRRA 169 (492)
Q Consensus 97 ~~~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~---~llg~~~~----~~~s~e 169 (492)
+.+++++++|+++++|||++||++|.+||+++++++++++++++++++|++|+++++.+ +++|.++. ..+|++
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 23446677889999999999999999999999999999999999999999999887765 45676532 468999
Q ss_pred HHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCC
Q 011147 170 ELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTP 249 (492)
Q Consensus 170 EL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~ 249 (492)
||+.+++. +. +.++++|++||+|+|+|++++|+|+||||++|++++.+++++ ++++.+.++||||||||+++.
T Consensus 158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 99999984 22 259999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhh
Q 011147 250 TNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQS 329 (492)
Q Consensus 250 d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~ 329 (492)
|||+|+|+.+|++ +...+.. .....+. ..+ ..+++++|++++
T Consensus 231 D~IiGiv~~kDll----~~~~~~~--------~~~~~~l-----------~~~--~r~~~~Vpe~~~------------- 272 (413)
T PRK11573 231 DDAISMLRVREAY----RLMTEKK--------EFTKENM-----------LRA--ADEIYFVPEGTP------------- 272 (413)
T ss_pred CceEEEEEHHHHH----HHhhccC--------cCCHHHH-----------Hhh--ccCCeEeCCCCc-------------
Confidence 9999999955543 2211100 0000000 011 123567898875
Q ss_pred hhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccch--hhh----hhhhhcc
Q 011147 330 SMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYV--DVH----RKIKINM 402 (492)
Q Consensus 330 ~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~~--d~~----~~irv~~ 402 (492)
+.+++++|++++.| ++|+ ||||+++||||+|||+|||+| ||.||+|... ++. +.+.|+.
T Consensus 273 -------l~~lL~~~~~~~~~~AiVv------DEyG~~~GiVTleDilEeivG-ei~de~d~~~~~~i~~~~~~~~~v~G 338 (413)
T PRK11573 273 -------LSTQLVKFQRNKKKVGLVV------DEYGDIQGLVTVEDILEEIVG-DFTTSMSPTLAEEVTPQNDGSVIIDG 338 (413)
T ss_pred -------HHHHHHHHHhcCCeEEEEE------ecCCCeEEEeeHHHHHHHHhC-CCCcccCcccccceEEecCCEEEEEe
Confidence 45679999999999 9999 899999999999999999999 9999988521 121 2233332
Q ss_pred cccc-------CCCCCCcccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147 403 LESQ-------KSPSPGAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN 441 (492)
Q Consensus 403 ~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 441 (492)
..+- +..+|...|.|. |+.....|+||..||.+...+|+
T Consensus 339 ~~~l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~~~ 385 (413)
T PRK11573 339 TANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYD 385 (413)
T ss_pred eeEHHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEEEECCEE
Confidence 2211 235677789999 99999999999999999887764
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=1.5e-60 Score=502.37 Aligned_cols=353 Identities=22% Similarity=0.341 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 011147 21 VGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDA----LL 96 (492)
Q Consensus 21 l~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~~~~----l~ 96 (492)
++|+++||||||+|+|++|+++.+++.++++|++ +|+++++++++|+++|+|+|+||+++|++++.++.. ++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999998874 688999999999999999999999999887654332 23
Q ss_pred HH--------HHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh---hCCCCccc
Q 011147 97 PA--------WASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWL---LGKRHSAL 165 (492)
Q Consensus 97 ~~--------~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~~l---lg~~~~~~ 165 (492)
+. .++++++|+++++|||++||++|.+||++++.++++++++++++++|++|+++++++++ +|.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 21 12455677889999999999999999999999999999999999999999999887654 56554 35
Q ss_pred cCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEE
Q 011147 166 LRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIY 245 (492)
Q Consensus 166 ~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~ 245 (492)
+|++||+.+++. ++++| ++++|++||+|+|+|++++|+|+||||+++++++.+++++ ++++.+.++||||+|||
T Consensus 157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 899999999985 33345 6899999999999999999999999999999999999998 99999999999999999
Q ss_pred eCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchh
Q 011147 246 VGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDI 325 (492)
Q Consensus 246 ~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l 325 (492)
+++.|+|+|+|+.+|+ ++.+.+. ..++++ +.+ +++++|++++
T Consensus 231 ~~~~d~ivGiv~~kDl----l~~~~~~---------~~~l~~--------------~~~--~~~~Vpe~~~--------- 272 (408)
T TIGR03520 231 KETIDNITGVLYIKDL----LPHLNKK---------NFDWQS--------------LLR--EPYFVPENKK--------- 272 (408)
T ss_pred cCCCCceEEEEEHHHH----HhHhccC---------CCCHHH--------------HcC--CCeEeCCCCc---------
Confidence 9888999999995554 3222110 001111 222 3456788765
Q ss_pred hhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccchhh-----hhhhh
Q 011147 326 DIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDV-----HRKIK 399 (492)
Q Consensus 326 ~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~~d~-----~~~ir 399 (492)
+.+++++|++++.| ++|+ ||||+++||||+|||+|||+| ||.||+|.-.+. .+.+.
T Consensus 273 -----------l~~ll~~m~~~~~~~aiVv------DE~G~~~GiVT~eDileeivg-ei~de~d~~~~~i~~~~~~~~~ 334 (408)
T TIGR03520 273 -----------LDDLLRDFQEKKNHLAIVV------DEYGGTSGLVTLEDIIEEIVG-DISDEFDDEDLIYSKIDDNNYV 334 (408)
T ss_pred -----------HHHHHHHHHhcCceEEEEE------cCCCCEEEEEEHHHHHHHHhC-CCCCcCCcCccceEEeCCCeEE
Confidence 55679999999999 9999 899999999999999999999 999998843221 12233
Q ss_pred hcccccc-------CCC---CC--Ccccccc-cccCCCCCCCCCCCCCcccCCC
Q 011147 400 INMLESQ-------KSP---SP--GAAFVSR-LRRTPMDSPIPSHHDQTPVSSY 440 (492)
Q Consensus 400 v~~~~~~-------~~~---~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 440 (492)
++...+- +.. .| .+.|.|. |+.+...|+||..||++....|
T Consensus 335 v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~~ 388 (408)
T TIGR03520 335 FEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENF 388 (408)
T ss_pred EEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECCE
Confidence 3211110 112 22 4678888 9999999999999999887655
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-62 Score=487.94 Aligned_cols=368 Identities=21% Similarity=0.328 Sum_probs=303.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 011147 12 MFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIF 91 (492)
Q Consensus 12 ~~w~~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~ 91 (492)
+.|..++++++|+++||||||+|+|+++++|.|++.++++|++ +|+++.+++++|+++++++||||+++|++.+.+
T Consensus 1 ~~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasal 76 (423)
T COG4536 1 PTWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASAL 76 (423)
T ss_pred CcchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHH
Confidence 3588899999999999999999999999999999999999985 799999999999999999999999999876644
Q ss_pred HH----HHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---hhhCCC
Q 011147 92 LD----ALLPA---WASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLD---WLLGKR 161 (492)
Q Consensus 92 ~~----~l~~~---~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~---~llg~~ 161 (492)
.. .++|. .+|+.+.|+++++|+|++||++|..|||+++..++.++.++..+|+|++|+++++++ ++||++
T Consensus 77 aT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 77 ATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 33 34443 357888899999999999999999999999999999999999999999999988765 567875
Q ss_pred C----ccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHc
Q 011147 162 H----SALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISN 237 (492)
Q Consensus 162 ~----~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~ 237 (492)
. +...+.||||.+++.++ ++|...+++++|+-|+|+|++.+|+|||+||.+|..++.|++++ +.++.+..+
T Consensus 157 ~~~~~~~~~s~EElR~~v~~~~----~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s 231 (423)
T COG4536 157 LDQAVSQLSSKEELRTAVNESG----SEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHS 231 (423)
T ss_pred cccccccccCHHHHHHHHHHhh----cccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhC
Confidence 3 35689999999999644 45777788999999999999999999999999999999999998 999999999
Q ss_pred CCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCC
Q 011147 238 GHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNS 317 (492)
Q Consensus 238 ~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~ 317 (492)
.|+|+|||+++.|||+|++| +++.++.+.+.+... -.++ ++-..++||+|+.++
T Consensus 232 ~HtRiplyr~~~DnIiGvlh----~r~llr~l~e~~~~~--------k~d~-------------~~~a~epyFVPe~Tp- 285 (423)
T COG4536 232 PHTRIPLYRDDLDNIIGVLH----VRDLLRLLNEKNEFT--------KEDI-------------LRAADEPYFVPEGTP- 285 (423)
T ss_pred CCCceeeecCChhHhhhhhh----HHHHHHHhhccCccc--------HhHH-------------HHHhcCCeecCCCCc-
Confidence 99999999999999999997 445556655432110 0111 122456899999876
Q ss_pred CCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccchhhhh
Q 011147 318 PSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHR 396 (492)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~~d~~~ 396 (492)
+.+.+.+|++++.| ++|| ||||++.|+||+|||+|||+| ||.||+|...+-..
T Consensus 286 -------------------l~~QL~~F~~~k~hialVV------DEYG~i~GLVTLEDIlEEIVG-dftde~d~~~~ev~ 339 (423)
T COG4536 286 -------------------LSDQLVAFQRNKKHIALVV------DEYGDIQGLVTLEDILEEIVG-DFTDEHDTLAKEVI 339 (423)
T ss_pred -------------------HHHHHHHHHHhcceEEEEE------eccCcEEeeeeHHHHHHHHhc-cccccCcccchhhc
Confidence 34458999999999 9999 899999999999999999999 88899986543211
Q ss_pred h---hhhcccccc---------CCCCC-Ccccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147 397 K---IKINMLESQ---------KSPSP-GAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN 441 (492)
Q Consensus 397 ~---irv~~~~~~---------~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 441 (492)
. ..+....+. .-.+| .+| .|. |.+.-.+-.||..|..+.+.+|+
T Consensus 340 ~q~dgs~iidGs~~iRdlNr~l~W~Lp~e~a-~TinGLvle~le~IP~~~~~~~i~~~~ 397 (423)
T COG4536 340 PQSDGSFIIDGSANVRDLNRALDWNLPDEDA-RTINGLVLEELEEIPEEGQAVRIGGYR 397 (423)
T ss_pred ccCCCcEEEeCCCcHHHHHHhcCCCCCCCcc-hhHHHHHHHHHHhCCCCCeEEEEcCEE
Confidence 1 111111111 11366 344 355 88999999999999999998885
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=8.4e-57 Score=477.06 Aligned_cols=365 Identities=22% Similarity=0.355 Sum_probs=294.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 011147 13 FWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFL 92 (492)
Q Consensus 13 ~w~~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~~ 92 (492)
.++.++++++|+++|||||++|+|++|++|.|+++++++|++ +|..++++.++++.+|+++++|+++++...+++.
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~ 78 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVG 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999999999999999999999999999999764 7889999999999999999999999998776654
Q ss_pred HHHH----HHHH---------HHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh-
Q 011147 93 DALL----PAWA---------SIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLL- 158 (492)
Q Consensus 93 ~~l~----~~~~---------a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~~ll- 158 (492)
...+ ..|. .++++|+++++|||++||++|++||++++++.++++++++++++|++|++++++++++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~ 158 (429)
T COG1253 79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR 158 (429)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 1111 1467788999999999999999999999999999999999999999999999887654
Q ss_pred --CCC----CccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHH
Q 011147 159 --GKR----HSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMG 232 (492)
Q Consensus 159 --g~~----~~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~ 232 (492)
|.+ +....+.++++ +++ ++.+.|.++++|++||+|+|+|++++|+++||||+++++++.+++++ ++.+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~ 232 (429)
T COG1253 159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE 232 (429)
T ss_pred HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence 443 23356778888 776 46678999999999999999999999999999999999999999998 9999
Q ss_pred HHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccC
Q 011147 233 LIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFN 312 (492)
Q Consensus 233 ~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp 312 (492)
.+.+++|||||||+++.|+++|++|.||++....+.-. ....+ .. ..+++++|
T Consensus 233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~------------~~~~~-------------~~--~~~~~~Vp 285 (429)
T COG1253 233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS------------DLDLR-------------VL--VRPPLFVP 285 (429)
T ss_pred HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc------------ccchh-------------hc--ccCCeEec
Confidence 99999999999999999999999985544332222210 00000 01 11567789
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccc
Q 011147 313 AYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDY 391 (492)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~ 391 (492)
++++ +.+++++||+.+.| ++|+ ||||++.|+||+|||+|||+| ||.||+|+-
T Consensus 286 et~~--------------------~~~lL~~~r~~~~hmAiVv------DEyG~~~GlVTleDIiEeIvG-ei~de~d~~ 338 (429)
T COG1253 286 ETLS--------------------LSDLLEEFREERTHMAIVV------DEYGGVEGLVTLEDIIEEIVG-EIPDEHDED 338 (429)
T ss_pred CCCc--------------------HHHHHHHHHHhCCeEEEEE------EcCCCeEEEeEHHHHHHHHhC-CCcCccccc
Confidence 8875 45679999999999 9999 899999999999999999999 999999862
Q ss_pred --hhhhhh----hhhc----ccccc---CCCCC-Ccccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147 392 --VDVHRK----IKIN----MLESQ---KSPSP-GAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN 441 (492)
Q Consensus 392 --~d~~~~----irv~----~~~~~---~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 441 (492)
.++.++ +.+. ..... ..+.+ .+.|.|. ||.....|++|..||.+-...|+
T Consensus 339 ~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~ 403 (429)
T COG1253 339 EEEDIIQRDDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR 403 (429)
T ss_pred ccccceEecCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe
Confidence 233332 1121 11111 11223 4478899 99999999999999999888775
No 5
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=100.00 E-value=2.1e-39 Score=347.38 Aligned_cols=333 Identities=44% Similarity=0.641 Sum_probs=285.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhh-hHHHHHHHHhchhHHHHHHHHHHH
Q 011147 4 NDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRK-NAEKILPIVKNQHLLLCTLLIGNA 82 (492)
Q Consensus 4 ~~~~~~~~~~w~~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~-~A~~il~l~~~~~~lL~tllign~ 82 (492)
+..|||+..+|++..++++|++|+|+|||.++++|+++...++.+.+.|+.++++ .+++++...++.+++|+|++++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~ 82 (498)
T KOG2118|consen 3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS 82 (498)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence 5678999999999888899999999999999999999999999999999988876 788889999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhCCC
Q 011147 83 MAMEA-LPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKR 161 (492)
Q Consensus 83 l~~~~-l~~~~~~l~~~~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~~llg~~ 161 (492)
+++.+ ++++++..++.|.++.++++.++.||||+||++|.+|+..++..+.|++++++++++|+.|+++++ ++.+|..
T Consensus 83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~ 161 (498)
T KOG2118|consen 83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN 161 (498)
T ss_pred hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence 99999 999988888889999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCcc
Q 011147 162 HSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSR 241 (492)
Q Consensus 162 ~~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SR 241 (492)
.+..+.+++++.++..|++|+.+ |.+.++|..||.+++++.++.++|||||..++++++.+..++++.+..+.++||||
T Consensus 162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr 240 (498)
T KOG2118|consen 162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR 240 (498)
T ss_pred cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence 88889999999999999998876 99999999999999999999999999999999999999999989999999999999
Q ss_pred ceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcc
Q 011147 242 VPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVI 321 (492)
Q Consensus 242 iPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~ 321 (492)
||||+++..+++|.++.... ++-+... .+. ...++.+. ..+.. .++|..+.
T Consensus 241 ipv~~~~~~~~i~~~L~~~~----~~~~~~~--~~~---~~~~v~~~-------------~~~~l--~~vp~~~~----- 291 (498)
T KOG2118|consen 241 IPVYEQEPKNKIGGLLVMNL----LRLLQVE--VPL---EPLPVSES-------------ALLRL--PLVPENMP----- 291 (498)
T ss_pred eeeccCcccchhhHHHHhhh----hhhhccc--ccc---ccccchhh-------------hcccc--ccCCCccc-----
Confidence 99999888888888652221 1111100 000 01111111 00111 12355543
Q ss_pred cchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccc
Q 011147 322 SSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDY 391 (492)
Q Consensus 322 ~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~ 391 (492)
+...++.|++++.| +.|. .....+|++|++|+ ||++ .||.||.|.+
T Consensus 292 ---------------~~~~l~~~~~~~~H~~~v~-------~~~~~~~~~~l~~~-~~~~-~ev~de~d~~ 338 (498)
T KOG2118|consen 292 ---------------LLDLLNEFQKGKSHMAVVR-------NGHVDIFVLTLEDL-EEVV-KEVEDEEDKE 338 (498)
T ss_pred ---------------HHHHHHHHhhhhceeEEEe-------cCCcceeeEeccch-hhhc-ceeccccccc
Confidence 33348999999999 6665 47889999999999 9999 6999999876
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.97 E-value=1.4e-31 Score=270.91 Aligned_cols=228 Identities=20% Similarity=0.290 Sum_probs=176.1
Q ss_pred HHhhhhhCCCCccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHH
Q 011147 152 KLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTM 231 (492)
Q Consensus 152 ~il~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~ 231 (492)
.++.+++|.+. .|++||+.+++. +.++|.|+++|++||+|+|+|++++|+++|+||.++++++.+++++ +++
T Consensus 21 ~~~~~~~~~~~---~t~eEl~~l~~~----~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~ 92 (292)
T PRK15094 21 LLLSQLFHGEP---KNRDELLALIRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECL 92 (292)
T ss_pred HHHHHHcCCCC---CCHHHHHHHHHh----HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHH
Confidence 33444566554 489999999984 5567999999999999999999999999999999999999999998 999
Q ss_pred HHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhcccccccccccc
Q 011147 232 GLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQF 311 (492)
Q Consensus 232 ~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~v 311 (492)
+.+.+++|||||||+++.|+++|+|+.+|+++.. ... .....+++ +++. ++++
T Consensus 93 ~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~----~~~-------~~~~~l~~--------------l~r~--~~~V 145 (292)
T PRK15094 93 DVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM----RSD-------AEAFSMDK--------------VLRQ--AVVV 145 (292)
T ss_pred HHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh----hcc-------CCcCCHHH--------------HcCC--CcCc
Confidence 9999999999999987778999999955543211 100 00011111 2222 2345
Q ss_pred CCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCcc
Q 011147 312 NAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDD 390 (492)
Q Consensus 312 p~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~ 390 (492)
|++++ +.+++++|++++.| ++|+ |+||+++||||++||+|+|+| ||.||+|.
T Consensus 146 ~e~~~--------------------l~~~L~~m~~~~~~~a~Vv------De~G~viGiVTleDIle~ivG-ei~de~d~ 198 (292)
T PRK15094 146 PESKR--------------------VDRMLKEFRSQRYHMAIVI------DEFGGVSGLVTIEDILELIVG-EIEDEYDE 198 (292)
T ss_pred CCCCc--------------------HHHHHHHHHhcCCEEEEEE------eCCCCEEEEeEHHHHHHHHhC-CCcccccc
Confidence 76654 56789999999999 9999 899999999999999999999 99999985
Q ss_pred chh--h----hhhhhhcccccc-------CCCCCCcccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147 391 YVD--V----HRKIKINMLESQ-------KSPSPGAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN 441 (492)
Q Consensus 391 ~~d--~----~~~irv~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 441 (492)
..+ + .+.+.|+....- +..+|...|.|. ||.+..+|+||..||.+.+.+|+
T Consensus 199 ~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~~~~ 263 (292)
T PRK15094 199 EDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQ 263 (292)
T ss_pred ccccccEEeCCCeEEEEeccCHHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCCCCEEEECCEE
Confidence 321 2 123444322211 224677789999 99999999999999999887664
No 7
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.7e-31 Score=252.14 Aligned_cols=230 Identities=19% Similarity=0.299 Sum_probs=179.2
Q ss_pred HHHHhhhhhCCCCccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHH
Q 011147 150 ISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEK 229 (492)
Q Consensus 150 is~il~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e 229 (492)
+.++++.+|..++. +++||..+++ +++..+.++++-..|++|++++.+..|+|||+||++|+++..+++++ +
T Consensus 19 fe~L~~~~f~gEpk---nr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGEPK---NREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCCCc---CHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 45555566654443 6899999998 46667999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhcccccccccc
Q 011147 230 TMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNE 309 (492)
Q Consensus 230 ~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 309 (492)
.++.+.++.||||||+.++.|+|.||++.+|+ ++.+... .....++ .+.|+. +
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDL----L~~~~~~-------~~~F~i~--------------~lLRPa--v 143 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDL----LPFMRSD-------AEPFDIK--------------ELLRPA--V 143 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHH----HHHhcCC-------cccccHH--------------Hhcccc--e
Confidence 99999999999999999999999999986655 4433211 0011222 233443 4
Q ss_pred ccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcC
Q 011147 310 QFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDET 388 (492)
Q Consensus 310 ~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEt 388 (492)
++|+++. +...||.|+.++.| ++|+ ||||+|-|+||.|||+|+|+| ||.||+
T Consensus 144 ~VPESKr--------------------vd~lLkeFR~~RnHMAIVi------DEfGgVsGLVTIEDiLEqIVG-dIEDE~ 196 (293)
T COG4535 144 VVPESKR--------------------VDRLLKEFRSQRNHMAIVI------DEFGGVSGLVTIEDILEQIVG-DIEDEY 196 (293)
T ss_pred ecccchh--------------------HHHHHHHHHhhcCceEEEE------eccCCeeeeEEHHHHHHHHhc-cccccc
Confidence 4688765 33458999999999 9999 899999999999999999999 999999
Q ss_pred ccchhhh--h----hhhhcccccc-------CCCCCCcccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147 389 DDYVDVH--R----KIKINMLESQ-------KSPSPGAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN 441 (492)
Q Consensus 389 D~~~d~~--~----~irv~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 441 (492)
|+-.+.. + .++|.++... +...+.--+-|+ |.+|.+.|.+|.-|+.+-+..|.
T Consensus 197 Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDeevDTIGGLVm~afGhLP~RGE~i~i~~~~ 263 (293)
T COG4535 197 DEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGEKIDIGGYQ 263 (293)
T ss_pred chhhhhhhHhhcCCceEEEecccHHHHHHHhcCCCChhhhhhhhHHHHHHhccCCCCCCEEEEcceE
Confidence 9764321 1 1344444332 112444455577 99999999999999999998874
No 8
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.96 E-value=2.3e-27 Score=222.85 Aligned_cols=169 Identities=27% Similarity=0.489 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011147 16 YLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDAL 95 (492)
Q Consensus 16 ~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~~~~l 95 (492)
++++++++++++|||||+|+|++++++.+++.++++|++ +++++.++++||+++++|+++||++++.+.+.+...+
T Consensus 2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778899999999999999999999999999999874 6889999999999999999999999998876543332
Q ss_pred ----H----HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh---hCCCC--
Q 011147 96 ----L----PAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWL---LGKRH-- 162 (492)
Q Consensus 96 ----~----~~~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~~l---lg~~~-- 162 (492)
+ +.+.++++.++++++|||++||++|.+||++++.+.++++++++++++|++|++.++.+++ +|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~ 157 (183)
T PF01595_consen 78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE 157 (183)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 2 3345667788899999999999999999999999999999999999999999998887755 45543
Q ss_pred ccccCHHHHHHHHHhhccccCCCCCCChhH
Q 011147 163 SALLRRAELKTLVDMHGNEAGKGGELTHDE 192 (492)
Q Consensus 163 ~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E 192 (492)
+..+++|||+++++. ++++|.++++|
T Consensus 158 ~~~~s~eel~~lv~~----~~e~G~i~~~E 183 (183)
T PF01595_consen 158 DPAVSEEELRSLVEE----GEEEGVIEEEE 183 (183)
T ss_pred cCCCCHHHHHHHHHh----HHHCCCCCCCC
Confidence 467999999999994 55679999886
No 9
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.30 E-value=2.3e-11 Score=130.51 Aligned_cols=151 Identities=12% Similarity=0.221 Sum_probs=112.2
Q ss_pred cccCHHHHHHHHHhhccccCCCCCCCh-----hHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcC
Q 011147 164 ALLRRAELKTLVDMHGNEAGKGGELTH-----DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG 238 (492)
Q Consensus 164 ~~~s~eEL~~lv~~~~~e~~~~g~L~~-----~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~ 238 (492)
..+|++|+..++... +..|.+.+ +|.+++++++++++. |++ ++++++.++++. ++++.+.+++
T Consensus 43 dtvTe~ema~~ma~~----gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMARE----GGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHhc----CCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 367999999999853 33688884 899999999988775 543 668899999998 9999999999
Q ss_pred CccceEEeCCC--CceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCC
Q 011147 239 HSRVPIYVGTP--TNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMN 316 (492)
Q Consensus 239 ~SRiPV~~~~~--d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~ 316 (492)
++++||++++. ++++|+|+.+|+ ..... .+.+++++ ++.....+++++.+
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL----~~~~~----------~~~~V~dv--------------m~~~~~~~V~~~~s 162 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDI----RFVKD----------KGKPVSEV--------------MTREEVITVPEGID 162 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHH----hhhhc----------CCCCHHHh--------------hCCCCCEEECCCCc
Confidence 99999998754 689999995443 21110 01223332 11011222344432
Q ss_pred CCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147 317 SPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELL 380 (492)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl 380 (492)
+.++++.|++.+.+ ++|+ |++|+++|+||++|+++++-
T Consensus 163 --------------------l~eal~~m~~~~~~~lpVV------De~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 163 --------------------LEEALKVLHEHRIEKLPVV------DKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred --------------------HHHHHHHHHHcCCCeEEEE------cCCCcEEEEEEhHHhhhccc
Confidence 56789999999999 9999 89999999999999999974
No 10
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.29 E-value=3.1e-11 Score=129.56 Aligned_cols=154 Identities=13% Similarity=0.203 Sum_probs=111.4
Q ss_pred ccCHHHHHHHHHhhccccCCC------CCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHH--
Q 011147 165 LLRRAELKTLVDMHGNEAGKG------GELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIIS-- 236 (492)
Q Consensus 165 ~~s~eEL~~lv~~~~~e~~~~------g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~-- 236 (492)
.++.+|+..+++.. .++ +.++++|++.+++++++.+.+|+++|++ ++.+++.+.++. ++++.+.+
T Consensus 89 ~l~~dd~~~ll~~l----~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEEV----PANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHhC----CHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 46778888888742 223 4799999999999999999999999994 889999999998 99999975
Q ss_pred -cCCccceEE-eCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCC
Q 011147 237 -NGHSRVPIY-VGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAY 314 (492)
Q Consensus 237 -~~~SRiPV~-~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~ 314 (492)
.+++++++| .++.++++|+|+.+| ++... .+.+++++ +. .. ...++.+
T Consensus 162 ~~~~~~~~v~Vvd~~~~l~GvV~l~d----Ll~a~-----------~~~~v~~i-------------m~-~~-~~~v~~~ 211 (449)
T TIGR00400 162 KTKEDIYTLYVTNESKHLKGVLSIRD----LILAK-----------PEEILSSI-------------MR-SS-VFSIVGV 211 (449)
T ss_pred CCccceeEEEEECCCCeEEEEEEHHH----HhcCC-----------CCCcHHHH-------------hC-CC-CeeECCC
Confidence 345556655 344578999998333 22211 01123322 11 11 1112322
Q ss_pred CCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 315 MNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
. ++.++++.|++++.. ++|+ |++|+++|+||.+|+++.+..
T Consensus 212 ~--------------------~~~eal~~m~~~~~~~lpVV------D~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 212 N--------------------DQEEVARLIQKYDFLAVPVV------DNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred C--------------------CHHHHHHHHHHcCCCEEeEE------cCCCeEEEEEEHHHHHHHHHh
Confidence 2 356789999998888 8899 789999999999999999976
No 11
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.25 E-value=2.2e-11 Score=118.74 Aligned_cols=130 Identities=17% Similarity=0.292 Sum_probs=103.5
Q ss_pred HhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhh
Q 011147 196 ITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEI 275 (492)
Q Consensus 196 I~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~ 275 (492)
+.++..+.+.+|+++|++ +..++..|+++. |+.+.+.+++....||.++ |+++|++..+|+++++..+.
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~------ 231 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGN------ 231 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCC------
Confidence 355667889999999996 889999999997 9999999999999999975 59999999887776666542
Q ss_pred HHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEe
Q 011147 276 AEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKE 354 (492)
Q Consensus 276 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv 354 (492)
.+.+|+++ |.+....+ - +..++.+|++.|.+++.. ++|+
T Consensus 232 -----~~~kV~~~-------------M~k~vitI--~--------------------eDe~i~dAir~M~~~nVGRLlV~ 271 (294)
T COG2524 232 -----LDAKVSDY-------------MRKNVITI--N--------------------EDEDIYDAIRLMNKNNVGRLLVT 271 (294)
T ss_pred -----ccccHHHH-------------hccCCceE--c--------------------CchhHHHHHHHHHhcCcceEEEE
Confidence 23455555 22221111 1 123588999999999999 9999
Q ss_pred cccCCCCCCCcEEEEechhHHHHHHccC
Q 011147 355 ELESLPSVDEEVIGIITLEDVMEELLQE 382 (492)
Q Consensus 355 ~~~~~pde~g~vvGIITlEDViEeLlge 382 (492)
|.+|+.+||||..||+.+|.|.
T Consensus 272 ------ds~gkpvGiITrTDIL~~ia~~ 293 (294)
T COG2524 272 ------DSNGKPVGIITRTDILTRIAGL 293 (294)
T ss_pred ------ccCCcEEEEEehHHHHHHhhcc
Confidence 7899999999999999999884
No 12
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.98 E-value=1.2e-09 Score=99.80 Aligned_cols=141 Identities=16% Similarity=0.257 Sum_probs=93.8
Q ss_pred CCCCChhH---HHHHhhcccc--cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEcc
Q 011147 185 GGELTHDE---TTIITGALDM--TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGH 259 (492)
Q Consensus 185 ~g~L~~~E---~~iI~~vl~l--~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~ 259 (492)
.|.+++.= +.|++...+- ...+++.+|+ ++++++.+++++. ++++++.++|||.+||.++ |.+||-|...
T Consensus 40 ~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~ 114 (187)
T COG3620 40 AGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITEN 114 (187)
T ss_pred cCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHH
Confidence 36666532 3444444333 4467899998 6999999999998 9999999999999999976 7899999977
Q ss_pred chHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHH
Q 011147 260 SHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHL 339 (492)
Q Consensus 260 d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~ 339 (492)
++.+.++++.. +. ...+++++ |.+ ++ |.-.... .+|
T Consensus 115 ~iv~~~le~~e----~i----~~~~vr~v-------------M~e---~f--P~Vs~~~-----~l~------------- 150 (187)
T COG3620 115 DIVRALLEGME----SI----RSLRVREV-------------MGE---PF--PTVSPDE-----SLN------------- 150 (187)
T ss_pred HHHHHHhcccc----ch----hhhhHHHH-------------hcC---CC--CcCCCCC-----CHH-------------
Confidence 66555554431 11 12234443 211 11 3322211 121
Q ss_pred HHHHHhHcCcceEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 340 CLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 340 ~l~~~~~~~~~~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
+..++-+++..++|+ ++|+++||||..||+..+-|
T Consensus 151 vI~~LL~~~~AVlV~-------e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 151 VISQLLEEHPAVLVV-------ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHHHHhhCCeEEEE-------eCCceEEEEeHHHHHHHHhc
Confidence 255655655446676 79999999999999998765
No 13
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.97 E-value=3.1e-08 Score=98.56 Aligned_cols=164 Identities=11% Similarity=0.163 Sum_probs=108.2
Q ss_pred ccCHHHHHHHHHhhccccCCCCCCChhHHHHHhh-------cccccccccccccccCcceEEEeCCCChHHHHHHHHHHc
Q 011147 165 LLRRAELKTLVDMHGNEAGKGGELTHDETTIITG-------ALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISN 237 (492)
Q Consensus 165 ~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~-------vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~ 237 (492)
.++.++|...++.. +|.=+++.|+-+-+-+ .-.+.+.+..|||++ +|++++.+++++ ++.+++.++
T Consensus 202 gfs~~Dld~aL~~~----~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQRL----GETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHhc----CceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 47889999988843 2345677766433322 224678899999996 899999999999 999999999
Q ss_pred CCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCC
Q 011147 238 GHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNS 317 (492)
Q Consensus 238 ~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~ 317 (492)
+..-+||.|+ ..+++|+|..+|+ .|.......+.-..-...+++.+ |+.++... -|+
T Consensus 275 ~ikaLPV~d~-~~rl~GiVt~~dl----~~~a~~~p~qrlr~~~~~~vk~i-------------mt~~v~tv-~pd---- 331 (382)
T COG3448 275 RIKALPVLDE-HRRLVGIVTQRDL----LKHARPSPFQRLRFLRPPTVKGI-------------MTTPVVTV-RPD---- 331 (382)
T ss_pred Cccccccccc-ccceeeeeeHHHH----hhccCcchHHHhhccCCCccccc-------------ccCcceee-cCC----
Confidence 9999999975 4789999995543 33221110000000001111111 11111110 011
Q ss_pred CCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 318 PSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
.++.+.+..|-.++.| ++|+ |++|+++||||..|+|-.+.-
T Consensus 332 -----------------tpa~~lvp~lad~g~H~lpvl------d~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 332 -----------------TPAVELVPRLADEGLHALPVL------DAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred -----------------CcHHHHHHHhhcCCcceeeEE------cCCCcEEEEeeHHHHHHHHHH
Confidence 1244558899999999 9999 899999999999999988753
No 14
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.95 E-value=3e-09 Score=107.89 Aligned_cols=130 Identities=22% Similarity=0.319 Sum_probs=94.0
Q ss_pred HHHHHhhcc-----cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147 192 ETTIITGAL-----DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV 266 (492)
Q Consensus 192 E~~iI~~vl-----~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv 266 (492)
-..||.+++ .-+-.+|+|+|+|..+..++..+++++ ++.++..+.|||||||++. ...++|+|. |+++.
T Consensus 170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~-~~kvvGvVt----~rDv~ 243 (432)
T COG4109 170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNR-SMKVVGVVT----MRDVL 243 (432)
T ss_pred HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceecc-cceEEEEEE----ehhhh
Confidence 345555554 456678999999999999999999998 9999999999999999974 467999998 44444
Q ss_pred HhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhH
Q 011147 267 KCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWER 346 (492)
Q Consensus 267 k~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~ 346 (492)
.... +++.+.+ |+++ ++.+-..++ +..+-+.|--
T Consensus 244 ~~~~-----------~t~ieKV-------------Mtkn--p~tv~~~ts--------------------VAsvaq~Miw 277 (432)
T COG4109 244 DKKP-----------STTIEKV-------------MTKN--PITVRAKTS--------------------VASVAQMMIW 277 (432)
T ss_pred cCCC-----------CccHHHH-------------hccC--Ceeecccch--------------------HHHHHHHHHh
Confidence 3322 2233333 2221 111122221 3345677777
Q ss_pred cCcc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147 347 QDVK-ISKEELESLPSVDEEVIGIITLEDVMEEL 379 (492)
Q Consensus 347 ~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeL 379 (492)
.... ++|+ |++..++||||..|+++.|
T Consensus 278 E~iem~PVv------~~n~~llGiitR~dvlk~l 305 (432)
T COG4109 278 EGIEMLPVV------DSNNTLLGIITRQDVLKSL 305 (432)
T ss_pred ccceeeeEE------cCCceEEEEEEHHHHHHHH
Confidence 7778 8999 8999999999999999988
No 15
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.86 E-value=2.8e-08 Score=107.83 Aligned_cols=150 Identities=12% Similarity=0.183 Sum_probs=108.6
Q ss_pred cccCHHHHHHHHHhhccccCCCCCCC-----hhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcC
Q 011147 164 ALLRRAELKTLVDMHGNEAGKGGELT-----HDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG 238 (492)
Q Consensus 164 ~~~s~eEL~~lv~~~~~e~~~~g~L~-----~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~ 238 (492)
..+|++||..++.. ++.-|.|. +++.++++++.++ +++|. .++.+++.++++. ++++.+.+++
T Consensus 50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~--~~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVV--TDPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhccc--CCCeEeCCCCCHH-HHHHHHHHhC
Confidence 36799999999974 33457777 4788999988775 45676 4778899999998 9999999999
Q ss_pred CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCC
Q 011147 239 HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSP 318 (492)
Q Consensus 239 ~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~ 318 (492)
++++||+++ .++++|+|+.+|+ ..... ...+++++ +. ......++.+.
T Consensus 118 ~~~lpVvd~-~g~lvGiVt~~DL----~~~~~----------~~~~V~di-------------m~-~~~~v~v~~~~--- 165 (486)
T PRK05567 118 ISGVPVVDE-NGKLVGIITNRDV----RFETD----------LSQPVSEV-------------MT-KERLVTVPEGT--- 165 (486)
T ss_pred CCEEEEEcc-CCEEEEEEEHHHh----hhccc----------CCCcHHHH-------------cC-CCCCEEECCCC---
Confidence 999999974 5789999995443 11110 01122222 11 00111234433
Q ss_pred CcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147 319 SVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELL 380 (492)
Q Consensus 319 ~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl 380 (492)
++.++++.|.+.+.+ ++|+ |++|+++|+||.+|+++.+.
T Consensus 166 -----------------sl~eal~~m~~~~~~~lpVV------De~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 166 -----------------TLEEALELLHEHRIEKLPVV------DDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred -----------------CHHHHHHHHHHcCCCEEEEE------cCCCcEEEEEEhHHhhhhhh
Confidence 256779999999998 9999 79999999999999998874
No 16
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.76 E-value=8e-08 Score=83.12 Aligned_cols=117 Identities=12% Similarity=0.162 Sum_probs=75.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++.+.+.+++++++||+++ .++++|+++.+|+++...+..... . ...+.+. +
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~---~-----~~~~~~~--~---- 65 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNN---L-----DLTVGEA--L---- 65 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcccc---c-----cCCHHHH--H----
Confidence 567899999998 9999999999999999975 478999999766554322110000 0 0000000 0
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
... ..+.. ....++.+. ++.++++.|.+.+.+ ++|+ |++|+++|+||.+|
T Consensus 66 ~~~-~~~~~--~~~~v~~~~--------------------~l~~~~~~m~~~~~~~l~Vv------d~~~~~~Givt~~d 116 (120)
T cd04641 66 ERR-SQDFE--GVRTCSPDD--------------------CLRTIFDLIVKARVHRLVVV------DENKRVEGIISLSD 116 (120)
T ss_pred hhc-ccCCC--CCeEEcCCC--------------------cHHHHHHHHHhcCccEEEEE------CCCCCEEEEEEHHH
Confidence 000 00000 001122222 366789999999999 9999 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 117 i~~ 119 (120)
T cd04641 117 ILQ 119 (120)
T ss_pred hhc
Confidence 975
No 17
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.76 E-value=7.2e-08 Score=81.55 Aligned_cols=110 Identities=8% Similarity=0.160 Sum_probs=73.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+++++.+.+..... ...++.++
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~--------~~~~~~~~------- 64 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASA--------LDTPVSEI------- 64 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCc--------cccCHHHh-------
Confidence 467789999998 99999999999999999754 78999999666543332110000 01112111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+ ...+++.+. ++.++++.|.+.+.+ ++|+ ++ |+++|+||.+|
T Consensus 65 ------~~~--~~~~v~~~~--------------------~~~~~l~~~~~~~~~~~~Vv------~~-~~~~Gvit~~d 109 (113)
T cd04623 65 ------MTR--NVITVTPDD--------------------TVDEAMALMTERRFRHLPVV------DG-GKLVGIVSIGD 109 (113)
T ss_pred ------cCC--CcEEECCCC--------------------cHHHHHHHHHHcCCCEeEEE------eC-CEEEEEEEHHH
Confidence 111 111123332 255678999998887 8888 44 99999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 110 i~~ 112 (113)
T cd04623 110 VVK 112 (113)
T ss_pred hhc
Confidence 975
No 18
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.69 E-value=1.8e-07 Score=80.02 Aligned_cols=111 Identities=18% Similarity=0.294 Sum_probs=75.6
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++++.+.+++++.+||++++.++++|+++.+|+++.+.+...+. .+.++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~--------~~~~v~~~------- 65 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP--------DRVNVYEI------- 65 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC--------CccCHHHH-------
Confidence 567889999998 99999998999999999753368999999776654443321100 01122222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+ ....++.+. ++.++++.|.+.+.+ ++|+ |+ |+++|+||+.|
T Consensus 66 ------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------d~-~~~~Gvi~~~d 110 (114)
T cd04630 66 ------MTK--PLISVSPDM--------------------DIKYCARLMERTNIRRAPVV------EN-NELIGIISLTD 110 (114)
T ss_pred ------hcC--CCeeECCCC--------------------CHHHHHHHHHHcCCCEeeEe------eC-CEEEEEEEHHH
Confidence 111 111123332 256789999998888 8888 55 99999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
++.
T Consensus 111 l~~ 113 (114)
T cd04630 111 IFL 113 (114)
T ss_pred hhc
Confidence 874
No 19
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.68 E-value=1.3e-07 Score=80.10 Aligned_cols=110 Identities=25% Similarity=0.384 Sum_probs=75.4
Q ss_pred cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147 215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN 294 (492)
Q Consensus 215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~ 294 (492)
+++..++.++++. ++.+.+.+.+++.+||.+++.+.++|++..+++++....... ..++.
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~-----------~~~~~-------- 60 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE-----------DLDLR-------- 60 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC-----------cCCHH--------
Confidence 3678899999998 999999998999999997543689999995554332211100 00111
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
.+.+.. ..++... ++.++++.|.+.+.+ ++|+ |++|+++|+||..
T Consensus 61 ------~~~~~~--~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvit~~ 106 (111)
T cd04590 61 ------DLLRPP--LFVPEST--------------------PLDDLLEEMRKERSHMAIVV------DEYGGTAGLVTLE 106 (111)
T ss_pred ------HHhcCC--eecCCCC--------------------cHHHHHHHHHhcCCcEEEEE------ECCCCEEEEeEHH
Confidence 111111 1112221 366789999999888 8888 6789999999999
Q ss_pred HHHHH
Q 011147 374 DVMEE 378 (492)
Q Consensus 374 DViEe 378 (492)
|+++|
T Consensus 107 di~~~ 111 (111)
T cd04590 107 DILEE 111 (111)
T ss_pred HhhcC
Confidence 99875
No 20
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.67 E-value=1.5e-07 Score=79.94 Aligned_cols=109 Identities=12% Similarity=0.212 Sum_probs=73.1
Q ss_pred eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhh
Q 011147 217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLK 296 (492)
Q Consensus 217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~ 296 (492)
+..++.++++. ++.+.+.+.+++++||++++ +.++|+++.+++++.+..... .+.++.++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~----------~~~~v~~~-------- 62 (112)
T cd04624 3 VVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID----------LDTPVSEI-------- 62 (112)
T ss_pred CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC----------CccCHHHh--------
Confidence 45688999998 99999999999999999754 789999996665433322110 01112111
Q ss_pred hhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHH
Q 011147 297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDV 375 (492)
Q Consensus 297 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDV 375 (492)
+.+. ...++... ++.++++.|.+.+.. ++|+ +++|+++|+||.+|+
T Consensus 63 -----~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~g~~~Gilt~~dl 109 (112)
T cd04624 63 -----MTRD--LVTVDPDE--------------------PVAEAAKLMRKNNIRHHLVV------DKGGELVGVISIRDL 109 (112)
T ss_pred -----ccCC--CEEECCCC--------------------cHHHHHHHHHHcCccEEEEE------cCCCcEEEEEEHHHh
Confidence 1111 11122222 245678999887777 8888 678999999999999
Q ss_pred HHH
Q 011147 376 MEE 378 (492)
Q Consensus 376 iEe 378 (492)
++|
T Consensus 110 ~~~ 112 (112)
T cd04624 110 VRE 112 (112)
T ss_pred ccC
Confidence 875
No 21
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.66 E-value=2.6e-07 Score=80.28 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=74.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++++.+.+++++++||++++.++++|+++.+|+++.+.+..... ...+. .. + .
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~-----------~~~~~-~~-~-~ 66 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSF-----------PGLDP-LY-P-I 66 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhc-----------cchhh-hh-h-h
Confidence 456788999998 99999998899999999754368999999776554332221000 00000 00 0 0
Q ss_pred hhhh-ccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 296 KQRQ-GELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 296 ~~~~-~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
.... ..+.+. ...++.. .++.++++.|.+.+.+ ++|+ |++|+++|+||+.
T Consensus 67 ~~~~~~~~~~~--~~~v~~~--------------------~~l~~a~~~m~~~~~~~lpVv------d~~~~~vGiit~~ 118 (123)
T cd04627 67 PLRDLTIGTSD--VISINGD--------------------QPLIDALHLMHNEGISSVAVV------DNQGNLIGNISVT 118 (123)
T ss_pred hhhhcccCcCC--ceEeCCC--------------------CCHHHHHHHHHHcCCceEEEE------CCCCcEEEEEeHH
Confidence 0000 000000 1111222 2366789999999998 9999 7789999999999
Q ss_pred HHH
Q 011147 374 DVM 376 (492)
Q Consensus 374 DVi 376 (492)
|+-
T Consensus 119 di~ 121 (123)
T cd04627 119 DVR 121 (123)
T ss_pred Hhh
Confidence 974
No 22
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.65 E-value=1.2e-07 Score=97.33 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=85.1
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhcc
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSK 282 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~ 282 (492)
...+|+|+|++..++.+++.++++. ++.+.+.++++..+||.++ .+.++|+|..+|+.+...+... ..+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~~---------~~~ 268 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGID---------LRQ 268 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCCC---------ccc
Confidence 7778999999755888999999998 9999998888877777764 4789999997765432211100 011
Q ss_pred CCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCC
Q 011147 283 APMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPS 361 (492)
Q Consensus 283 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pd 361 (492)
.+++++ +.+. +..+.... ++.++++.|.+++.+ ++|+
T Consensus 269 ~~v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------- 306 (326)
T PRK10892 269 ASIADV-------------MTPG--GIRVRPGI--------------------LAVDALNLMQSRHITSVLVA------- 306 (326)
T ss_pred CCHHHh-------------cCCC--CEEECCCC--------------------CHHHHHHHHHHCCCcEEEEe-------
Confidence 223333 1111 11122222 366789999999998 8887
Q ss_pred CCCcEEEEechhHHHHH
Q 011147 362 VDEEVIGIITLEDVMEE 378 (492)
Q Consensus 362 e~g~vvGIITlEDViEe 378 (492)
++|+++||||..|++..
T Consensus 307 ~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 307 DGDHLLGVLHMHDLLRA 323 (326)
T ss_pred eCCEEEEEEEhHHhHhc
Confidence 46899999999999863
No 23
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.65 E-value=1.2e-07 Score=80.17 Aligned_cols=94 Identities=11% Similarity=0.163 Sum_probs=71.1
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++.+.+.+++++.+||.+++.++++|+++.+|+. +... +
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~----~~~~-----------------~------- 52 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI----LILR-----------------L------- 52 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh----hhee-----------------e-------
Confidence 578899999998 9999999999999999985446899999844321 1110 0
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC-CcEEEEechh
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD-EEVIGIITLE 373 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~-g~vvGIITlE 373 (492)
..+..+. ++.+|++.|.+++.+ ++|+ |++ |+++|+||..
T Consensus 53 -------------~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~~~~~~giit~~ 93 (98)
T cd04618 53 -------------VSIHPER--------------------SLFDAALLLLKNKIHRLPVI------DPSTGTGLYILTSR 93 (98)
T ss_pred -------------EEeCCCC--------------------cHHHHHHHHHHCCCCEeeEE------ECCCCCceEEeehh
Confidence 0012221 366789999999999 9999 566 8999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|++.
T Consensus 94 d~~~ 97 (98)
T cd04618 94 RILK 97 (98)
T ss_pred hhhc
Confidence 9863
No 24
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.63 E-value=2.3e-07 Score=79.37 Aligned_cols=109 Identities=12% Similarity=0.137 Sum_probs=72.2
Q ss_pred eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhh
Q 011147 217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLK 296 (492)
Q Consensus 217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~ 296 (492)
+..++.++++. ++.+.+.+.+++++||+++ .++++|++..+|+...+.+.... .+.++.++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~---------~~~~~~~~-------- 63 (115)
T cd04593 3 PPVLSATTPLR-EAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAG---------EPSAVDEV-------- 63 (115)
T ss_pred CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhccccc---------ccccHHHh--------
Confidence 35678899998 9999999999999999975 37899999855443222111000 00111111
Q ss_pred hhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC--CcEEEEechh
Q 011147 297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD--EEVIGIITLE 373 (492)
Q Consensus 297 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~--g~vvGIITlE 373 (492)
+.+ ....++... ++.++++.|.+.+.+ ++|+ |++ |+++|+||.+
T Consensus 64 -----~~~--~~~~v~~~~--------------------~l~~~l~~~~~~~~~~~~Vv------d~~~~~~~~Gvit~~ 110 (115)
T cd04593 64 -----ATP--PLLTVHPDE--------------------PLAHALDRMASRGLRQLPVV------DRGNPGQVLGLLTRE 110 (115)
T ss_pred -----ccC--CceEECCCC--------------------CHHHHHHHHHHcCCceeeEE------eCCCCCeEEEEEEhH
Confidence 111 111123332 256789999999998 9998 566 8999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 111 di~~ 114 (115)
T cd04593 111 NVLL 114 (115)
T ss_pred Hhhc
Confidence 9986
No 25
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.62 E-value=1.2e-07 Score=97.12 Aligned_cols=121 Identities=11% Similarity=0.115 Sum_probs=84.5
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA 283 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~ 283 (492)
..+|+++|+...++.+++.++++. ++.+.+.+++.+.+||+++ .++++|+|..+|+.+.+.... ..+.
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~----------~~~~ 263 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGG----------ALTT 263 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCC----------CcCC
Confidence 478999998643488899999998 9999998888899999975 478999998555432221110 0112
Q ss_pred CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC
Q 011147 284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV 362 (492)
Q Consensus 284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde 362 (492)
++.++ +.+. +..++... ++.++++.|.+.+.. ++|+ |+
T Consensus 264 ~v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~ 302 (321)
T PRK11543 264 PVNEA-------------MTRG--GTTLQAQS--------------------RAIDAKEILMKRKITAAPVV------DE 302 (321)
T ss_pred cHHHh-------------cCCC--CEEECCCC--------------------CHHHHHHHHHHcCCCEEEEE------cC
Confidence 22222 1111 11122222 366789999999998 9999 67
Q ss_pred CCcEEEEechhHHHH
Q 011147 363 DEEVIGIITLEDVME 377 (492)
Q Consensus 363 ~g~vvGIITlEDViE 377 (492)
+|+++|+||..|+++
T Consensus 303 ~~~lvGvIt~~di~~ 317 (321)
T PRK11543 303 NGKLTGAINLQDFYQ 317 (321)
T ss_pred CCeEEEEEEHHHHHh
Confidence 889999999999986
No 26
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.62 E-value=1.1e-07 Score=105.15 Aligned_cols=126 Identities=5% Similarity=0.062 Sum_probs=86.3
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS 281 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~ 281 (492)
++..+|+|+|++ +...++.++++. |+.+.+.+++++.+||.|+ .++++|+|+.+|..+.+.+... ..
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~---------~~ 510 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD---------TT 510 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc---------cc
Confidence 667899999986 456789999998 9999999999999999975 3689999985554332211100 00
Q ss_pred cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147 282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP 360 (492)
Q Consensus 282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p 360 (492)
+.+++++ +.+.... ++.++ ++.++++.|++.+.+ ++|+
T Consensus 511 ~~~v~di-------------m~~~~~~--v~~d~--------------------~L~~al~~m~~~~~~~lpVV------ 549 (574)
T PRK01862 511 DKTAADY-------------AHTPFPL--LTPDM--------------------PLGDALEHFMAFQGERLPVV------ 549 (574)
T ss_pred cchHHHh-------------ccCCCee--ECCCC--------------------CHHHHHHHHHhcCCCeeeeE------
Confidence 1122222 1111111 12221 366789999999998 9999
Q ss_pred CCC--CcEEEEechhHHHHHHcc
Q 011147 361 SVD--EEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 361 de~--g~vvGIITlEDViEeLlg 381 (492)
|++ ++++|+||..|+++.+..
T Consensus 550 d~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 550 ESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred eCCCCCeEEEEEEHHHHHHHHHh
Confidence 455 579999999999999854
No 27
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=3.6e-07 Score=77.41 Aligned_cols=108 Identities=15% Similarity=0.284 Sum_probs=73.0
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
+...++.++++. ++.+.+.+.+++++||+++ .+.++|+++..++.+.+..... +.++.++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~-----------~~~v~~~------- 61 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGP-----------DAPVRGV------- 61 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCC-----------CCcHHHH-------
Confidence 456788999998 9999988889999999975 3689999986554332221110 1122222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++... ++.++++.|++.+.. ++|+ |++|+++|+||..|
T Consensus 62 ------~~~~--~~~i~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~G~it~~d 107 (111)
T cd04639 62 ------MRRD--FPTVSPSA--------------------TLDAVLRLMQQGGAPAVPVV------DGSGRLVGLVTLEN 107 (111)
T ss_pred ------hcCC--CcEECCCC--------------------cHHHHHHHHHhcCCceeeEE------cCCCCEEEEEEHHH
Confidence 1111 11123332 256778999998878 8888 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+.|
T Consensus 108 l~~ 110 (111)
T cd04639 108 VGE 110 (111)
T ss_pred hhc
Confidence 976
No 28
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=3e-07 Score=79.24 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=73.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++.+.+.+.+++++||++++ +.++|+++..++.+....................++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~------- 72 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEV------- 72 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHh-------
Confidence 456789999998 99999999999999999753 789999985554322211100000000000000111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++.+. .+.++++.|++.+.+ ++|+ |++|+++|+||..|
T Consensus 73 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvit~~d 118 (122)
T cd04803 73 ------MKTD--VLTVTPDT--------------------PLREAAEIMVENKIGCLPVV------DDKGTLVGIITRSD 118 (122)
T ss_pred ------hCCC--CeEeCCCC--------------------cHHHHHHHHHHcCCCeEEEE------cCCCCEEEEEEHHH
Confidence 1111 11123332 256779999998888 8898 67789999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 119 l~~ 121 (122)
T cd04803 119 FLR 121 (122)
T ss_pred hhc
Confidence 975
No 29
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=5.1e-07 Score=76.30 Aligned_cols=106 Identities=17% Similarity=0.316 Sum_probs=72.8
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++++.+.+++++++||.+++ ++++|+++.++++ +.+.+. ..++.++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~----~~~~~~---------~~~~~~~------- 60 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDIS----KAVARD---------KKSVEDI------- 60 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHH----HHHhhC---------ccCHHHh-------
Confidence 567789999998 99999999999999999753 7899999855433 222111 0011111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++..+ ++.++++.|++.+.+ ++|+ +++|+++|+||++|
T Consensus 61 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~G~v~~~d 106 (110)
T cd04605 61 ------MTRN--VITATPDE--------------------PIDVAARKMERHNISALPVV------DAENRVIGIITSED 106 (110)
T ss_pred ------cCCC--CeEECCCC--------------------cHHHHHHHHHHhCCCEEeEE------CCCCcEEEEEEHHH
Confidence 1011 11123222 266789999999888 8888 68899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 107 i~~ 109 (110)
T cd04605 107 ISK 109 (110)
T ss_pred hhh
Confidence 975
No 30
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.59 E-value=3.1e-07 Score=79.44 Aligned_cols=120 Identities=13% Similarity=0.220 Sum_probs=75.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHH--hhhccCCCcccccccc
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAE--MEKSKAPMQHDININS 293 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~--~~~~~~~v~~v~~~~~ 293 (492)
++..++.++++. ++++.+.+.+++.+||++++.+.++|+|+..+++..+.+.......... ......++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSI----- 75 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHH-----
Confidence 456789999998 9999999999999999986447899999966654333211100000000 00000011111
Q ss_pred hhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEech
Q 011147 294 NLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITL 372 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITl 372 (492)
+.+. ...++.+. ++.++++.|++.+.+ ++|+ |++|+++|+||.
T Consensus 76 --------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~V~------~~~~~~~Gvit~ 119 (125)
T cd04631 76 --------MTRN--VITITPDD--------------------SIKDAAELMLEKRVGGLPVV------DDDGKLVGIVTE 119 (125)
T ss_pred --------hcCC--ceEeCCCC--------------------cHHHHHHHHHHcCCceEEEE------cCCCcEEEEEEH
Confidence 1111 11123332 255678999999988 8888 677999999999
Q ss_pred hHHHH
Q 011147 373 EDVME 377 (492)
Q Consensus 373 EDViE 377 (492)
.|+++
T Consensus 120 ~di~~ 124 (125)
T cd04631 120 RDLLK 124 (125)
T ss_pred HHhhc
Confidence 99975
No 31
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.59 E-value=4.4e-07 Score=77.83 Aligned_cols=111 Identities=14% Similarity=0.262 Sum_probs=74.8
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++.+.+.++++..+||.++ .++++|++..+|+.+.+.+... . ....++.++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~-~-------~~~~~v~~~------- 64 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGG-P-------GCTAPVENV------- 64 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCC-C-------cccCCHHHH-------
Confidence 466789999998 9999999999999999975 3789999996665433221000 0 011222222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+.... ++... ++.++++.|.+.+.+ ++|+ |++|+++|+||..|
T Consensus 65 ------~~~~~~~--v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~~~~~Gvi~~~d 110 (114)
T cd04619 65 ------MTRAVVS--CRPGD--------------------LLHDVWQVMKQRGLKNIPVV------DENARPLGVLNARD 110 (114)
T ss_pred ------hcCCCee--ECCCC--------------------CHHHHHHHHHHcCCCeEEEE------CCCCcEEEEEEhHh
Confidence 1111101 12221 266789999999998 9999 77899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 111 l~~ 113 (114)
T cd04619 111 ALK 113 (114)
T ss_pred hcc
Confidence 975
No 32
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.59 E-value=4.2e-07 Score=79.38 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=74.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.+.++. ++.+.+.+++++.+||++++ +.++|+++..|+++...... .. ...+......+ ..
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~-----~~----~~~~~~~~~~~--~~ 68 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPD-----DL----LLYRTITFKEL--SE 68 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcc-----hh----hcccchhhhhh--hh
Confidence 677899999998 99999989999999999754 78999999665433221100 00 00000000000 00
Q ss_pred hhh-hccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 296 KQR-QGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 296 ~~~-~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
... ..... ......++.+ .++.++++.|.+.+.+ ++|+ |++|+++|+||..
T Consensus 69 ~~~~~~~~~-~~~~~~v~~~--------------------~~l~~a~~~~~~~~~~~l~Vv------d~~~~~~Giit~~ 121 (126)
T cd04642 69 KFTDSDGVK-SRPLITCTPS--------------------STLKEVITKLVANKVHRVWVV------DEEGKPIGVITLT 121 (126)
T ss_pred hcccccccc-cCCCeEECCC--------------------CcHHHHHHHHHHhCCcEEEEE------CCCCCEEEEEEHH
Confidence 000 00000 0011112222 2366789999999888 9999 7789999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 122 dil~ 125 (126)
T cd04642 122 DIIS 125 (126)
T ss_pred HHhc
Confidence 9974
No 33
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.57 E-value=5e-07 Score=76.48 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=73.9
Q ss_pred cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147 215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN 294 (492)
Q Consensus 215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~ 294 (492)
.++.+++.++++. ++.+.+.+++++++||+++ .+.++|+++.++++ .... +.++.++
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~----~~~~-----------~~~v~~~------ 58 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVA----GKDP-----------DTTIEKV------ 58 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECC-CCeEEEEecHHHHh----cccc-----------cccHHHH------
Confidence 4678899999998 9999999999999999974 47899999844432 1110 1112222
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
+.+ ...+++... ++.++++.|.+.+.+ ++|+ |++|+++|+||..
T Consensus 59 -------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~G~it~~ 103 (108)
T cd04596 59 -------MTK--NPITVNPKT--------------------SVASVAHMMIWEGIEMLPVV------DDNKKLLGIISRQ 103 (108)
T ss_pred -------hcC--CCeEECCCC--------------------CHHHHHHHHHHcCCCeeeEE------cCCCCEEEEEEHH
Confidence 100 111123332 256779999998888 8999 7889999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 104 di~~ 107 (108)
T cd04596 104 DVLK 107 (108)
T ss_pred Hhhc
Confidence 9986
No 34
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.56 E-value=4.9e-07 Score=78.11 Aligned_cols=117 Identities=9% Similarity=0.148 Sum_probs=73.7
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhh---hccCCCccccccc
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEME---KSKAPMQHDININ 292 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~---~~~~~v~~v~~~~ 292 (492)
++.+++.++++. ++.+.+.+.+++++||++++ +.++|+|..++++..+....... ..... ....++.++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~i~~~---- 74 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRP--LRGRLRGRDKPETVGDI---- 74 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccch--hhhhhhcccccccHHHh----
Confidence 567789999998 99999999999999999754 78999999555432221100000 00000 000011111
Q ss_pred chhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEec
Q 011147 293 SNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIIT 371 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIIT 371 (492)
+.+. ...++.+. ++.++++.|.+.+.+ ++|+ |++|+++|+||
T Consensus 75 ---------~~~~--~~~~~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~g~~~Gvit 117 (124)
T cd04600 75 ---------MSPP--VVTVRPDT--------------------PIAELVPLLADGGHHHVPVV------DEDRRLVGIVT 117 (124)
T ss_pred ---------ccCC--CeeeCCCC--------------------cHHHHHHHHHhcCCCceeEE------cCCCCEEEEEE
Confidence 1111 11123222 366789999999888 9999 67899999999
Q ss_pred hhHHHH
Q 011147 372 LEDVME 377 (492)
Q Consensus 372 lEDViE 377 (492)
..|++.
T Consensus 118 ~~di~~ 123 (124)
T cd04600 118 QTDLIA 123 (124)
T ss_pred hHHhhc
Confidence 999874
No 35
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.55 E-value=2.8e-07 Score=98.85 Aligned_cols=126 Identities=13% Similarity=0.191 Sum_probs=83.9
Q ss_pred HhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhh
Q 011147 196 ITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEI 275 (492)
Q Consensus 196 I~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~ 275 (492)
..++ |+..+|+++|.+ ++.++..++++. ++++.+.+.+++++||+++ .++++|+|+.+|+++.+.+...
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----- 396 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKA----- 396 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCC-----
Confidence 4444 788999999985 678899999998 9999999999999999975 3689999996655433322100
Q ss_pred HHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEec
Q 011147 276 AEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEE 355 (492)
Q Consensus 276 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~ 355 (492)
..+.++.++ +.+. ...++... ++.++++.|++. +.++|
T Consensus 397 ----~~~~~v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~~~~~--~~~vV- 434 (454)
T TIGR01137 397 ----NPDDAVSKV-------------MSKK--FIQIGEGE--------------------KLSDLSKFLEKN--SSAIV- 434 (454)
T ss_pred ----CcCCCHHHh-------------cCCC--CeEECCcC--------------------cHHHHHHHHHHC--CeeEE-
Confidence 001122222 1111 11123332 255678888764 33334
Q ss_pred ccCCCCCCCcEEEEechhHHHHHH
Q 011147 356 LESLPSVDEEVIGIITLEDVMEEL 379 (492)
Q Consensus 356 ~~~~pde~g~vvGIITlEDViEeL 379 (492)
+++|+++|+||+.|+++.|
T Consensus 435 -----~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 435 -----TEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred -----EECCEEEEEEEHHHHHHhh
Confidence 3578999999999999986
No 36
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.55 E-value=3.7e-07 Score=77.96 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=72.0
Q ss_pred ceEEEeCCCChHHHHHHHHHHcC-CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNG-HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN 294 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~-~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~ 294 (492)
++.+++.++++. ++.+.+.+++ ++++||+++ .++++|+++.+|+++...+. ..+.++.++
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~-----------~~~~~v~~~------ 62 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQ-----------WAQTTVIQV------ 62 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhh-----------ccccchhhh------
Confidence 456789999998 8998887664 889999974 47899999966543322100 001122222
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
+........+... .++.++++.|++.+.+ ++|+ |++|+++|+||..
T Consensus 63 -------~~~~~~~~~v~~~--------------------~~l~~a~~~~~~~~~~~l~Vv------~~~~~~~Gvl~~~ 109 (114)
T cd04801 63 -------MTPAAKLVTVLSE--------------------ESLAEVLKLLEEQGLDELAVV------EDSGQVIGLITEA 109 (114)
T ss_pred -------hcccccceEECCC--------------------CcHHHHHHHHHHCCCCeeEEE------cCCCcEEEEEecc
Confidence 1000000011222 2367789999999998 9999 6779999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 110 di~~ 113 (114)
T cd04801 110 DLLR 113 (114)
T ss_pred ceec
Confidence 9875
No 37
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=7e-07 Score=77.04 Aligned_cols=118 Identities=10% Similarity=0.208 Sum_probs=75.9
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHh-hhccCCCcccccccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEM-EKSKAPMQHDININSN 294 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~-~~~~~~v~~v~~~~~~ 294 (492)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.+++++.+.+........... .....++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 72 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQI------ 72 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHh------
Confidence 567789999998 9999999999999999985 78999999777655443221100000000 0000011111
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
+.+ ....++.+. ++.++++.|.+.+.. ++|+ |++|+++|++|+.
T Consensus 73 -------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~vv------~~~~~~~Gvit~~ 117 (122)
T cd04637 73 -------MTR--DPITVSPDT--------------------PVDEASKLLLENSISCLPVV------DENGQLIGIITWK 117 (122)
T ss_pred -------hcC--CCeeeCCCC--------------------cHHHHHHHHHHcCCCeEeEE------CCCCCEEEEEEHH
Confidence 111 111123332 255678999998888 8888 6789999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 118 dll~ 121 (122)
T cd04637 118 DLLK 121 (122)
T ss_pred Hhhh
Confidence 9986
No 38
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.54 E-value=1.1e-06 Score=75.03 Aligned_cols=108 Identities=9% Similarity=0.128 Sum_probs=72.5
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.+.++. ++++.+.+.+++++||.++ .++++|++...|+ .+...+. ..+.++.++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl----~~~~~~~-------~~~~~v~~~------- 61 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDE-ENKVLGQVTLSDL----LEIGPND-------YETLKVCEV------- 61 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHH----Hhhcccc-------ccccChhhe-------
Confidence 456789999998 9999998899999999974 3689999984442 2211000 011223322
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.... ..++... ++.++++.|.+++.+ ++|+ |++|+++|+||..|
T Consensus 62 ------~~~~~--~~v~~~~--------------------~l~~al~~m~~~~~~~lpVv------d~~~~~~Giit~~d 107 (111)
T cd04603 62 ------YIVPV--PIVYCDS--------------------KVTDLLRIFRETEPPVVAVV------DKEGKLVGTIYERE 107 (111)
T ss_pred ------eecCC--cEECCCC--------------------cHHHHHHHHHHcCCCeEEEE------cCCCeEEEEEEhHH
Confidence 11000 0012221 356789999999998 9999 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 108 i~~ 110 (111)
T cd04603 108 LLR 110 (111)
T ss_pred hhc
Confidence 975
No 39
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.54 E-value=6e-07 Score=76.00 Aligned_cols=108 Identities=9% Similarity=0.139 Sum_probs=72.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++.+.+.+.+++++||.++ +.++|++..+++++.....-. ..+.++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~---------~~~~~i~~~------- 62 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGL---------DPDTPVSEV------- 62 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCC---------CccCCHHHH-------
Confidence 456788999998 9999998889999999975 899999996664432221100 001111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++... ++.++++.|++.+.+ ++|+ ++ |+++|+||.+|
T Consensus 63 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~Giit~~d 107 (111)
T cd04800 63 ------MTAP--PITIPPDA--------------------TVFEALLLMLERGIHHLPVV------DD-GRLVGVISATD 107 (111)
T ss_pred ------hCCC--CeEECCCC--------------------cHHHHHHHHHHcCCCeeeEe------EC-CEEEEEEEHHH
Confidence 1111 11123322 366789999999988 8888 44 89999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 108 i~~ 110 (111)
T cd04800 108 LLR 110 (111)
T ss_pred hhc
Confidence 974
No 40
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.54 E-value=6.6e-07 Score=75.64 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=72.5
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.+++++ ..... ....++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~----~~~~~-------~~~~~v~~~------- 60 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAH----AIARG-------LELAKVKDV------- 60 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHH----HHhcc-------ccccCHHHH-------
Confidence 456788999998 9999999999999999975 78999998555432 21110 000112111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+ ...+++...+ +.++++.|++.+.+ ++|+ +++|+++|+||..|
T Consensus 61 ------~~~--~~~~v~~~~~--------------------~~~~~~~~~~~~~~~~~V~------~~~~~~~G~i~~~d 106 (110)
T cd04588 61 ------MTK--DVITIDEDEQ--------------------LYDAIRLMNKHNVGRLIVT------DDEGRPVGIITRTD 106 (110)
T ss_pred ------hcC--CceEECCCCC--------------------HHHHHHHHHhcCCCEEEEE------CCCCCEEEEEEhHH
Confidence 111 1112343332 55678999999888 8888 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 107 l~~ 109 (110)
T cd04588 107 ILR 109 (110)
T ss_pred hhc
Confidence 975
No 41
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.54 E-value=5.1e-07 Score=76.42 Aligned_cols=110 Identities=12% Similarity=0.205 Sum_probs=73.1
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++.+.+.+.+++++||++++ ++++|+++..++.+...+.. .. ...++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~-----~~----~~~~v~~~------- 63 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPS-----LY----DLVVASDI------- 63 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhccc-----cc----ccEEHHHh-------
Confidence 456788999998 99999999999999999754 78999999665433221100 00 00111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC-CCcEEEEechh
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV-DEEVIGIITLE 373 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde-~g~vvGIITlE 373 (492)
+.+. ...++... ++.++++.|++.+.+ ++|+ |+ +|+++|+||..
T Consensus 64 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~~Gvvt~~ 109 (114)
T cd04613 64 ------MTKP--PVVVYPED--------------------SLEDALKKFEDSDYEQLPVV------DDDPGKLLGILSRS 109 (114)
T ss_pred ------ccCC--CcEEcCCC--------------------CHHHHHHHHhhCCccEeeEE------eCCCCEEEEEEEhH
Confidence 1111 11123332 256679999999888 8888 56 79999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 110 di~~ 113 (114)
T cd04613 110 DLLS 113 (114)
T ss_pred Hhhc
Confidence 9874
No 42
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.53 E-value=5.9e-07 Score=76.15 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=73.0
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..+..++++. ++++.+.+.+++++||++++ +.++|+++..++++.+.+.... ...++.++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~---------~~~~v~~~------- 64 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDI---------LTLPVADV------- 64 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCcc---------ccCCHHHh-------
Confidence 455678899998 99999988899999999753 6899999866554433221100 00122222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+.. ..++.+. .+.++++.|.+.+.+ ++|+ +++|+++|+||..|
T Consensus 65 ------~~~~~--~~v~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~iG~it~~d 110 (114)
T cd04604 65 ------MTRNP--KTIDPDA--------------------LAAEALELMEENKITALPVV------DDNGRPVGVLHIHD 110 (114)
T ss_pred ------hccCC--eEECCCC--------------------cHHHHHHHHHHcCCCEEEEE------CCCCCEEEEEEHHH
Confidence 11111 1123332 256678999988887 8888 67899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 111 i~~ 113 (114)
T cd04604 111 LLR 113 (114)
T ss_pred hhc
Confidence 975
No 43
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.53 E-value=7.7e-07 Score=75.08 Aligned_cols=108 Identities=10% Similarity=0.176 Sum_probs=72.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++.+.+.+.++..+||+++ ++++|+++.+++++....... .+.++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~----------~~~~v~~~------- 61 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD----------LQTPVGEV------- 61 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC----------CCcCHHHh-------
Confidence 556789999998 9999999889999999976 789999985543222111100 01111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+ ....++... ++.++++.|++.+.+ ++|+ |++|+++|+||..|
T Consensus 62 ------~~~--~~~~~~~~~--------------------~l~~~l~~~~~~~~~~~~Vv------~~~~~~~Gvi~~~d 107 (111)
T cd04611 62 ------MSS--PLLTVPADT--------------------SLYDARQLMREHGIRHLVVV------DDDGELLGLLSQTD 107 (111)
T ss_pred ------cCC--CceEECCCC--------------------CHHHHHHHHHHcCCeEEEEE------CCCCcEEEEEEhHH
Confidence 111 111123322 255679999988888 8888 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 108 i~~ 110 (111)
T cd04611 108 LLQ 110 (111)
T ss_pred hhc
Confidence 975
No 44
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=6.2e-07 Score=76.06 Aligned_cols=108 Identities=6% Similarity=0.115 Sum_probs=71.8
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++++.+.+++++++||+++ .++++|+++.+|+++...... ..+.++.+.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----------~~~~~v~~~------- 62 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----------FLEKKVFNI------- 62 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----------cccCcHHHH-------
Confidence 456789999998 8999999999999999975 368999998555432111000 001112111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ..+++.+. .+.++++.|.+.+.. ++|+ |+ |+++|+||..|
T Consensus 63 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~G~it~~d 107 (111)
T cd04626 63 ------VSQD--VFYVNEED--------------------TIDEALDIMREKQIGRLPVV------DD-NKLIGVVRTKD 107 (111)
T ss_pred ------hcCC--cEEEcCCC--------------------cHHHHHHHHHHcCCCeeeEe------EC-CEEEEEEEhHH
Confidence 1111 11123332 256789999999888 8888 55 89999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 108 i~~ 110 (111)
T cd04626 108 ILD 110 (111)
T ss_pred hcc
Confidence 975
No 45
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.52 E-value=6.8e-07 Score=75.69 Aligned_cols=106 Identities=15% Similarity=0.292 Sum_probs=72.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++.+.+.+.+++++||+++ ++++|++...|+.+ .+... ..+.++.++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~----~~~~~-------~~~~~~~~~------- 61 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEK----ALRHG-------LGHAPVKDY------- 61 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHH----HHhcc-------cccCcHHHH-------
Confidence 567789999998 9999998889999999986 78999998555432 11100 001122222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+ .+..++.+. .+.++++.|++.+.+ ++|+ + +|+++|+||+.|
T Consensus 62 ------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~V~------~-~~~~~Gvvt~~d 106 (110)
T cd04595 62 ------MST--DVVTVPPDT--------------------PLSEVQELMVEHDIGRVPVV------E-DGRLVGIVTRTD 106 (110)
T ss_pred ------hcC--CCEEECCCC--------------------cHHHHHHHHHHcCCCeeEEE------e-CCEEEEEEEhHH
Confidence 111 111123332 255678999999888 8888 5 899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 107 i~~ 109 (110)
T cd04595 107 LLR 109 (110)
T ss_pred hhc
Confidence 985
No 46
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=7.6e-07 Score=76.67 Aligned_cols=119 Identities=11% Similarity=0.195 Sum_probs=73.9
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.++..++++. ++.+.+.+.+++++||+++ .++++|++...++++....................++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 72 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI------- 72 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH-------
Confidence 567889999998 9999999899999999964 4789999997665432100000000000000000111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+ .+..++..+ ++.++++.|.+.+.+ ++|+ |++|+++|+||.+|
T Consensus 73 ------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------d~~g~~~Gvit~~d 118 (122)
T cd04635 73 ------MST--PVYSVTPDD--------------------SIATAVELMLEHDIGRLPVV------NEKDQLVGIVDRHD 118 (122)
T ss_pred ------hcC--CCeeECCCC--------------------CHHHHHHHHHHcCCCeeeEE------cCCCcEEEEEEhHH
Confidence 100 111123332 255678999999988 8888 67899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 119 l~~ 121 (122)
T cd04635 119 VLK 121 (122)
T ss_pred hhc
Confidence 985
No 47
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=7.8e-07 Score=75.53 Aligned_cols=111 Identities=9% Similarity=0.111 Sum_probs=73.1
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++.+.+.+.+++++||+++ .++++|+++.+++.+.+.+..... ..+.++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~-------~~~~~v~~~------- 65 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHC-------DGVATVRDI------- 65 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhcc-------CCCccHHHH-------
Confidence 356788999998 9999998889999999974 368999999666544443221000 001122222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+ ....++... ++.++++.|.+.+.+ ++|+ |+ |.++|+||..|
T Consensus 66 ------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~Gvit~~d 110 (114)
T cd04629 66 ------MTT--EVLTVSPDD--------------------SIVDLAQLMLKAKPKRYPVV------DD-GKLVGQISRRD 110 (114)
T ss_pred ------hcc--CceEECCCC--------------------cHHHHHHHHHHhCCCccCEE------EC-CEEEEEEEHHH
Confidence 110 111123332 256779999999888 8888 45 89999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 111 i~~ 113 (114)
T cd04629 111 VLR 113 (114)
T ss_pred Hhc
Confidence 975
No 48
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.49 E-value=9.8e-07 Score=74.15 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=36.6
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
++.+++.++++. ++.+.+.+.+++++||+++ ++++|+++..++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl 44 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDL 44 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHH
Confidence 456788999998 9999999999999999975 789999985543
No 49
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.48 E-value=1.3e-06 Score=74.11 Aligned_cols=110 Identities=9% Similarity=0.229 Sum_probs=72.7
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++.+.+.+.+++.+||+++ ++++|++...+++. +.+.+. ... ...++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~---~~~~~~-~~~----~~~~~~~~------- 63 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVV---RAVAEG-RDP----DTTTVGDV------- 63 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHH---HHhhcc-CCc----ccCCHHHh-------
Confidence 456789999998 9999999999999999975 89999999666431 111110 000 00012211
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++... ++.++++.|++.+.+ ++|+ |++|+++|+||.+|
T Consensus 64 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~V~------~~~~~~~G~it~~d 109 (113)
T cd04622 64 ------MTRG--VVTVTEDD--------------------DVDEAARLMREHQVRRLPVV------DDDGRLVGIVSLGD 109 (113)
T ss_pred ------ccCC--ccEECCCC--------------------CHHHHHHHHHHcCCCeeeEE------CCCCcEEEEEEHHH
Confidence 1111 11122222 256678999988887 8888 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 110 i~~ 112 (113)
T cd04622 110 LAR 112 (113)
T ss_pred hhc
Confidence 975
No 50
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.48 E-value=1.3e-06 Score=74.15 Aligned_cols=109 Identities=11% Similarity=0.189 Sum_probs=72.6
Q ss_pred eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhh
Q 011147 217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLK 296 (492)
Q Consensus 217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~ 296 (492)
...++.++++. ++++.+.+.+++++||+++ .+.++|+++.+++++...+.- . ..+.++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~-----~----~~~~~i~~~-------- 63 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESE-----E----LKDAKVREV-------- 63 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhh-----h----hcCCcHHHh--------
Confidence 35688999998 9999999999999999975 378999999665443222110 0 001122221
Q ss_pred hhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHH
Q 011147 297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDV 375 (492)
Q Consensus 297 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDV 375 (492)
+... ...++.+. ++.++++.|.+.+.+ ++|+ |++|+++|+||..|+
T Consensus 64 -----~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------d~~g~~~Gvvt~~dl 110 (113)
T cd04615 64 -----MNSP--VITIDAND--------------------SIAKARWLMSNNNISRLPVL------DDKGKVGGIVTEDDI 110 (113)
T ss_pred -----ccCC--ceEECCCC--------------------cHHHHHHHHHHcCCCeeeEE------CCCCeEEEEEEHHHh
Confidence 1111 11123222 255678999998887 8888 678999999999999
Q ss_pred HH
Q 011147 376 ME 377 (492)
Q Consensus 376 iE 377 (492)
++
T Consensus 111 ~~ 112 (113)
T cd04615 111 LR 112 (113)
T ss_pred hc
Confidence 75
No 51
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.47 E-value=1.7e-06 Score=71.78 Aligned_cols=110 Identities=10% Similarity=0.243 Sum_probs=73.5
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.+.++. ++++.+.+.+++++||++++ ++++|++..++++....+..... ...+.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~---------~~~~~~~------- 63 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDP---------LVTVGDV------- 63 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCc---------cccHHHH-------
Confidence 456788999998 99999999899999999754 78999998655443222211100 0001111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.. ....++... ++.++++.|++.+.+ ++|+ |++|+++|++|..|
T Consensus 64 ------~~~--~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~V~------~~~~~~~G~i~~~d 109 (113)
T cd02205 64 ------MTR--DVVTVSPDT--------------------SLEEAAELMLEHGIRRLPVV------DDEGRLVGIVTRSD 109 (113)
T ss_pred ------hcC--CceecCCCc--------------------CHHHHHHHHHHcCCCEEEEE------cCCCcEEEEEEHHH
Confidence 110 111123222 256779999998888 8898 67899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 110 l~~ 112 (113)
T cd02205 110 ILR 112 (113)
T ss_pred hhc
Confidence 975
No 52
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.47 E-value=1.2e-06 Score=74.20 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=71.0
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
+...++.+.++. ++++.+.+.++..+||+++ ++++|+++.+++.+...+.... .+.++.+.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~---------~~~~i~~~------- 62 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLP---------SSTPVGEI------- 62 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCC---------CCCCHHHH-------
Confidence 345788999998 9999999999999999975 6899999855543222111000 01112111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+... ...++... .+.++++.|.+.+.+ ++|+ | +|+++|+||.+|
T Consensus 63 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~-~~~~~G~it~~d 107 (111)
T cd04589 63 ------ATFP--LITVDPDD--------------------FLFNALLLMTRHRIHRVVVR------E-GGEVVGVLEQTD 107 (111)
T ss_pred ------hCCC--cEEECCCC--------------------cHHHHHHHHHHhCccEEEEe------e-CCEEEEEEEhHH
Confidence 1111 11123332 256679999999999 8888 4 589999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 108 l~~ 110 (111)
T cd04589 108 LLS 110 (111)
T ss_pred hhc
Confidence 975
No 53
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.47 E-value=1.5e-06 Score=73.96 Aligned_cols=100 Identities=14% Similarity=0.251 Sum_probs=71.1
Q ss_pred cceEEEeCCCChHHHHHHHHHHcCCccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCccccccc
Q 011147 215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININ 292 (492)
Q Consensus 215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~ 292 (492)
.++..++.+++++ ++.+.+.+.+++++||+++. .++++|+|+.+++++.... +
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------~---- 56 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------Y---- 56 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------------------h----
Confidence 4677899999998 99999999999999999753 4689999985543221110 0
Q ss_pred chhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEec
Q 011147 293 SNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIIT 371 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIIT 371 (492)
+.+. ...++... ++.++++.|++.+.+ ++|+ ++|+++|+||
T Consensus 57 ---------m~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~pVv-------~~~~~~Gvvt 98 (105)
T cd04591 57 ---------IDPS--PFTVSPRT--------------------SLEKVHQLFRKLGLRHLLVV-------DEGRLVGIIT 98 (105)
T ss_pred ---------ccCC--CceECCCC--------------------cHHHHHHHHHHcCCCEEEEE-------ECCeEEEEEE
Confidence 1000 11123332 255678999999988 8887 4789999999
Q ss_pred hhHHHH
Q 011147 372 LEDVME 377 (492)
Q Consensus 372 lEDViE 377 (492)
..|+++
T Consensus 99 ~~dl~~ 104 (105)
T cd04591 99 RKDLLK 104 (105)
T ss_pred hhhhhc
Confidence 999975
No 54
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.46 E-value=5.8e-07 Score=79.03 Aligned_cols=49 Identities=8% Similarity=0.193 Sum_probs=40.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV 266 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv 266 (492)
++.+++.++++. ++++.+.+++++.+||++++ ++++|++..+++++.+.
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~ 51 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLS 51 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHH
Confidence 567899999998 99999999999999999753 68999999666554443
No 55
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.46 E-value=1e-06 Score=78.63 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=38.8
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA 263 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~ 263 (492)
++.+++.++++. ++++.+.+.+++++||+++ .++++|+++..++++
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~ 47 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAF 47 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHH
Confidence 466789999998 9999999999999999974 478999999666544
No 56
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.46 E-value=1.6e-06 Score=73.90 Aligned_cols=108 Identities=12% Similarity=0.153 Sum_probs=72.5
Q ss_pred eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhh
Q 011147 217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLK 296 (492)
Q Consensus 217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~ 296 (492)
.+.++.++++. ++.+.+.+.++..+||+++ .++++|+++.+|+++.+.+... .+.++.++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~----------~~~~v~~~-------- 63 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS----------LDDPVSEV-------- 63 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC----------cCCCHHHh--------
Confidence 35688999998 9999998888889999965 3689999996664433221110 01122222
Q ss_pred hhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHH
Q 011147 297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDV 375 (492)
Q Consensus 297 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDV 375 (492)
+..... .++... ++.++++.|.+.+.+ ++|+ |++|+++|+||.+|+
T Consensus 64 -----~~~~~~--~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvit~~di 110 (113)
T cd04607 64 -----MNRNPI--TAKVGS--------------------SREEILALMRERSIRHLPIL------DEEGRVVGLATLDDL 110 (113)
T ss_pred -----hcCCCE--EEcCCC--------------------CHHHHHHHHHHCCCCEEEEE------CCCCCEEEEEEhHHh
Confidence 100110 123322 256789999999888 9999 678999999999998
Q ss_pred HH
Q 011147 376 ME 377 (492)
Q Consensus 376 iE 377 (492)
+.
T Consensus 111 ~~ 112 (113)
T cd04607 111 LS 112 (113)
T ss_pred cc
Confidence 73
No 57
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.46 E-value=9.8e-07 Score=95.48 Aligned_cols=119 Identities=12% Similarity=0.161 Sum_probs=85.1
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS 281 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~ 281 (492)
++..+++++|++ ++++++.++++. ++.+.+.+++++.+||.++ .+.++|+|+.+| +... + .
T Consensus 86 l~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rD--------L~~~--~-----~ 146 (479)
T PRK07807 86 VAWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDE-EGRPVGVVTEAD--------CAGV--D-----R 146 (479)
T ss_pred Hhhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECC-CCeEEEEEeHHH--------HhcC--c-----c
Confidence 446677899974 778899999998 9999999999999999974 467999998443 2211 0 0
Q ss_pred cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147 282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP 360 (492)
Q Consensus 282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p 360 (492)
..++.++ +.+.. ..++... .+.++++.|.+++.+ ++|+
T Consensus 147 ~~~V~di-------------Mt~~~--itV~~d~--------------------sL~eAl~lM~~~~i~~LPVV------ 185 (479)
T PRK07807 147 FTQVRDV-------------MSTDL--VTLPAGT--------------------DPREAFDLLEAARVKLAPVV------ 185 (479)
T ss_pred CCCHHHh-------------ccCCc--eEECCCC--------------------cHHHHHHHHHhcCCCEEEEE------
Confidence 1223333 11111 1123332 266789999999999 9999
Q ss_pred CCCCcEEEEechhHHHHHHc
Q 011147 361 SVDEEVIGIITLEDVMEELL 380 (492)
Q Consensus 361 de~g~vvGIITlEDViEeLl 380 (492)
|++|+++|+||..||++..-
T Consensus 186 D~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 186 DADGRLVGVLTRTGALRATI 205 (479)
T ss_pred cCCCeEEEEEEHHHHHHHhh
Confidence 77899999999999987543
No 58
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.45 E-value=1.6e-06 Score=73.14 Aligned_cols=108 Identities=12% Similarity=0.247 Sum_probs=71.7
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++++.+.+.+++++||+++ +.++|+++.+|+.+ ..... ... ..++.+.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~----~~~~~-~~~-----~~~~~~~------- 61 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRR----VPAEG-REA-----TVLVGDV------- 61 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHH----HHhcC-ccc-----ccCHHHh-------
Confidence 456789999998 9999999889999999976 88999999555322 11110 000 0001111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++.+. ++.++++.|++.+.+ ++|+ |++|+++|+||..|
T Consensus 62 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~V~------~~~~~~~G~it~~d 107 (111)
T cd04612 62 ------MTRD--PVTASPDE--------------------TLRDALKRMAERDIGRLPVV------DDSGRLVGIVSRSD 107 (111)
T ss_pred ------ccCC--CeEECCCC--------------------CHHHHHHHHHhCCCCeeeEE------cCCCCEEEEEEHHH
Confidence 1111 11123332 255678999998888 9998 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 108 i~~ 110 (111)
T cd04612 108 LLR 110 (111)
T ss_pred hhh
Confidence 975
No 59
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.45 E-value=1.1e-06 Score=73.39 Aligned_cols=103 Identities=12% Similarity=0.193 Sum_probs=70.5
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++++.+.+++++++||.++ ++++|+++.+++ .+... +.++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l----~~~~~-----------~~~~~~~------- 56 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDV----RRAHP-----------NRLVADA------- 56 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHh----hcccc-----------cCCHHHH-------
Confidence 456788999998 8999998889999999973 789999984432 21110 1112222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+. . ....++... ++.++++.|.+.+.. ++|+ |+ |+++|+||..|
T Consensus 57 ------~~-~-~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~G~it~~~ 101 (105)
T cd04599 57 ------MT-R-EVVTISPEA--------------------SLLEAKRLMEEKKIERLPVL------RE-RKLVGIITKGT 101 (105)
T ss_pred ------cc-C-CCEEECCCC--------------------CHHHHHHHHHHcCCCEeeEE------EC-CEEEEEEEHHH
Confidence 10 0 111123332 256779999999998 8898 55 99999999999
Q ss_pred HHHH
Q 011147 375 VMEE 378 (492)
Q Consensus 375 ViEe 378 (492)
+++|
T Consensus 102 l~~~ 105 (105)
T cd04599 102 IALE 105 (105)
T ss_pred hccC
Confidence 9854
No 60
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.45 E-value=1.3e-06 Score=76.99 Aligned_cols=46 Identities=11% Similarity=0.309 Sum_probs=38.3
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA 263 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~ 263 (492)
++.++..++++. ++++.+.+.+++++||+++ .++++|++...++++
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~ 47 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIR 47 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHH
Confidence 456789999998 9999999899999999975 478999998665544
No 61
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.45 E-value=2.3e-06 Score=72.89 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=70.6
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchh-hHHhhhccCCCcccccccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKE-IAEMEKSKAPMQHDININSN 294 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~-~~~~~~~~~~v~~v~~~~~~ 294 (492)
++.+++.++++. ++.+.+.+.+++++||+++ .++++|+++.++++ +.+..... .... -.+.++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~----~~~~~~~~~~~~~-~~~~~v~~~------ 68 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDK-EGKYVGTISLTDIL----WKLKGLENLDLER-LVDLKVIDV------ 68 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHH----HHhhccCchhHHH-HhCCcHHHH------
Confidence 678899999998 9999999999999999974 46899999865543 33221100 0000 001111111
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCCCCCCcEEEEechhH
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~pde~g~vvGIITlED 374 (492)
++.. ...++.+. ++.++++.|.+.+ .++|+ |++|+++|+||+.|
T Consensus 69 --------~~~~-~~~v~~~~--------------------~l~~a~~~~~~~~-~~~Vv------~~~~~~~Gvit~~d 112 (116)
T cd04643 69 --------MNTD-VPVIIDDA--------------------DIEEILHLLIDQP-FLPVV------DDDGIFIGIITRRE 112 (116)
T ss_pred --------hcCC-CceecCCC--------------------CHHHHHHHHhcCC-ceeEE------eCCCeEEEEEEHHH
Confidence 1110 11122222 2567788997643 37788 68899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 113 il~ 115 (116)
T cd04643 113 ILK 115 (116)
T ss_pred hhc
Confidence 975
No 62
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.43 E-value=2e-06 Score=72.11 Aligned_cols=103 Identities=15% Similarity=0.278 Sum_probs=71.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.+.++. ++++.+.+.+++++||+++ ++++|+++.++++ +. .. +.++.++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~----~~-~~----------~~~~~~~------- 57 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLL----GK-DP----------DETVEEI------- 57 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhh----cc-Cc----------cccHHHh-------
Confidence 567789999998 9999998888999999974 7899999844432 11 00 1112222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+. . ....++... ++.++++.|++.+.+ ++|+ +++|+++|+||..|
T Consensus 58 ------~~-~-~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~g~~~Gvi~~~d 103 (107)
T cd04610 58 ------MS-K-DLVVAVPEM--------------------DIMDAARVMFRTGISKLPVV------DENNNLVGIITNTD 103 (107)
T ss_pred ------CC-C-CCeEECCCC--------------------CHHHHHHHHHHhCCCeEeEE------CCCCeEEEEEEHHH
Confidence 10 0 011123322 256678999998888 8898 68899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 104 i~~ 106 (107)
T cd04610 104 VIR 106 (107)
T ss_pred hhc
Confidence 975
No 63
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.43 E-value=2e-06 Score=72.85 Aligned_cols=109 Identities=11% Similarity=0.114 Sum_probs=72.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..+..++++. ++.+.+.+++++++||.++ ++++|+|...+++..+... .. .. ...++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~-~~---~~----~~~~v~~i------- 63 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQ-GL---DP----ESTLVERV------- 63 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhc-CC---Cc----CcCCHHHh-------
Confidence 566788999998 8999998889999999975 8899999966654322211 00 00 00111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++... ++.++++.|.+.+.+ ++|+ +++|+++|+||..|
T Consensus 64 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~l~Vv------~~~~~~~Gvvs~~d 109 (113)
T cd04587 64 ------MTPN--PVCATSDT--------------------PVLEALHLMVQGKFRHLPVV------DKSGQVVGLLDVTK 109 (113)
T ss_pred ------cCCC--CeEEcCCC--------------------CHHHHHHHHHHcCCCcccEE------CCCCCEEEEEEHHH
Confidence 1111 11123332 255679999998887 8888 67899999999999
Q ss_pred HH
Q 011147 375 VM 376 (492)
Q Consensus 375 Vi 376 (492)
++
T Consensus 110 l~ 111 (113)
T cd04587 110 LT 111 (113)
T ss_pred hc
Confidence 86
No 64
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=1.2e-06 Score=76.69 Aligned_cols=121 Identities=13% Similarity=0.192 Sum_probs=71.9
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH-HhhccchhhHHhhhccCCCcccccccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV-KCKNDSKEIAEMEKSKAPMQHDININSN 294 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv-k~l~~~~~~~~~~~~~~~v~~v~~~~~~ 294 (492)
++.++..++++. ++++.+.++++..+||.++ .++++|+++.+|+.+... +..... .....+.++.++
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~v~~i------ 69 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEG----GISRSELTVADV------ 69 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHc----CCCchheEHHHh------
Confidence 356788999998 9999998888889999974 378999999555432100 000000 000001112222
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC-CcEEEEech
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD-EEVIGIITL 372 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~-g~vvGIITl 372 (492)
+.+......++.+.. ...++.+++++|.+++.+ ++|+ |++ |.++|+||+
T Consensus 70 -------m~~~~~~~~~~~~~~----------------~~~~l~~~l~~m~~~~~~~lpVv------d~~~~~~~G~it~ 120 (126)
T cd04640 70 -------MTPKEDLKALDLEEL----------------ENASVGDVVETLKASGRQHALVV------DREHHQIRGIIST 120 (126)
T ss_pred -------cCchhhhccccHHHh----------------ccCcHHHHHHHHHHCCCceEEEE------ECCCCEEEEEEeH
Confidence 110000000010000 012366789999999998 9999 565 789999999
Q ss_pred hHHHH
Q 011147 373 EDVME 377 (492)
Q Consensus 373 EDViE 377 (492)
+|+++
T Consensus 121 ~di~~ 125 (126)
T cd04640 121 SDIAR 125 (126)
T ss_pred HHHhh
Confidence 99986
No 65
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.42 E-value=1.7e-06 Score=94.27 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=99.8
Q ss_pred ccCHHHHHHHHHhhccccCCCCCCC-hhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccce
Q 011147 165 LLRRAELKTLVDMHGNEAGKGGELT-HDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVP 243 (492)
Q Consensus 165 ~~s~eEL~~lv~~~~~e~~~~g~L~-~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiP 243 (492)
..++.++-..+...|--+-=....+ ++....++.+++.+ ..|+ .++++++.++++. ++++.+.+++++.+|
T Consensus 64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi--~dpvtV~pd~tV~-dA~~lm~~~~~~~lp 135 (505)
T PLN02274 64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFV--SDPVVKSPSSTIS-SLDELKASRGFSSVC 135 (505)
T ss_pred ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc-----cccc--CCCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence 4667777766653210000000123 34467788887553 2366 3778899999998 999999999999999
Q ss_pred EEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcc
Q 011147 244 IYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVI 321 (492)
Q Consensus 244 V~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~ 321 (492)
|.+++ .+.++|+|+.+|+. .... .+.++.++ +++......++...
T Consensus 136 VvD~~~~~GklvGIVT~~DL~-----~v~~---------~~~~V~eI-------------Mt~~~~lvtv~~~~------ 182 (505)
T PLN02274 136 VTETGTMGSKLLGYVTKRDWD-----FVND---------RETKLSEV-------------MTSDDDLVTAPAGI------ 182 (505)
T ss_pred EEeCCCcCCeEEEEEEHHHHh-----hccc---------cCCcHHHH-------------hccCCCcEEECCCC------
Confidence 99753 36899999955431 1110 12233333 11110001123322
Q ss_pred cchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147 322 SSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELL 380 (492)
Q Consensus 322 ~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl 380 (492)
++.++++.|++.+.+ ++|+ |++|.++|+||++|+++.+.
T Consensus 183 --------------sL~eAl~~m~~~~~~~LPVV------D~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 183 --------------DLEEAEAVLKDSKKGKLPLV------NEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred --------------CHHHHHHHHHHcCCCEEEEE------cCCCeEEEEEEHHHHHHHhh
Confidence 366789999999999 9999 78899999999999998874
No 66
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.42 E-value=2.6e-06 Score=71.46 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=69.0
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.+.++. ++++.+.+++++.+||.++ .++++|+++.+ ++.... .
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~--------dl~~~~-------------~-------- 50 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDD-DGKLSGIITER--------DLIAKS-------------E-------- 50 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECC-CCCEEEEEEHH--------HHhcCC-------------C--------
Confidence 567789999998 9999998899999999974 37899999833 322100 0
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
...++...+ +.++++.|++.+.+ ++|+ |++|+++|+||..|
T Consensus 51 ------------~~~v~~~~~--------------------l~~a~~~m~~~~~~~lpVv------~~~~~~~Giit~~d 92 (96)
T cd04614 51 ------------VVTATKRTT--------------------VSECAQKMKRNRIEQIPII------NGNDKLIGLLRDHD 92 (96)
T ss_pred ------------cEEecCCCC--------------------HHHHHHHHHHhCCCeeeEE------CCCCcEEEEEEHHH
Confidence 011122222 55679999999998 9998 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
++.
T Consensus 93 i~~ 95 (96)
T cd04614 93 LLK 95 (96)
T ss_pred hhc
Confidence 974
No 67
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.42 E-value=1.9e-06 Score=73.69 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=72.1
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccc
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININS 293 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~ 293 (492)
++..+..++++. ++++.+.+.+++++||+++. .++++|++..+++ ..... . ..+++++
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl----~~~~~-~---------~~~v~~~----- 62 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDI----DFLTD-S---------ETPLSEV----- 62 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHh----hhhhc-c---------CCCHHHh-----
Confidence 556788999998 99999988899999999752 4789999984442 11100 0 1112222
Q ss_pred hhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEech
Q 011147 294 NLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITL 372 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITl 372 (492)
+......+..+.. .++.++++.|++.+.+ ++|+ |++|.++|+||.
T Consensus 63 --------~~~~~~~~~~~~~--------------------~~l~~~l~~~~~~~~~~~pVv------~~~~~~~Gvit~ 108 (114)
T cd04602 63 --------MTPREVLVVAPTG--------------------ITLEEANEILRESKKGKLPIV------NDDGELVALVTR 108 (114)
T ss_pred --------cCCCceEEECCCC--------------------CCHHHHHHHHHhcCCCceeEE------CCCCeEEEEEEH
Confidence 1001111101111 1356789999999998 9999 788999999999
Q ss_pred hHHHH
Q 011147 373 EDVME 377 (492)
Q Consensus 373 EDViE 377 (492)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04602 109 SDLKK 113 (114)
T ss_pred HHhhc
Confidence 99975
No 68
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.42 E-value=1.4e-06 Score=77.08 Aligned_cols=130 Identities=10% Similarity=0.132 Sum_probs=74.0
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCccc-ccccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHD-ININSN 294 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v-~~~~~~ 294 (492)
++.+++.++++. ++++.+.+.++.++||+++ .+.++|++..+++++.+....... ...........++. +.+...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERR--RARWLDLLAGAEELAAAFVRS 78 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcch--hhhHHHHhcchHHHHHHHHHh
Confidence 567789999998 9999999999999999974 478999999666543221110000 00000000000000 000000
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
.......+++. ....++.+. ++.++++.|++.+.+ ++|+ | +|+++|+||..
T Consensus 79 ~~~~v~~~~~~-~~~~v~~~~--------------------~~~~~~~~~~~~~~~~l~Vv------d-~g~~~Gvit~~ 130 (135)
T cd04586 79 HGRKVADVMTR-PVVTVGEDT--------------------PLAEVAELMEEHRIKRVPVV------R-GGRLVGIVSRA 130 (135)
T ss_pred cCCCHHHHhCC-CceEeCCCC--------------------cHHHHHHHHHHcCCCccCEe------c-CCEEEEEEEhH
Confidence 00000111111 111123332 256779999999998 9998 6 89999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 131 di~~ 134 (135)
T cd04586 131 DLLR 134 (135)
T ss_pred hhhc
Confidence 9975
No 69
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.42 E-value=1.7e-06 Score=73.89 Aligned_cols=111 Identities=14% Similarity=0.260 Sum_probs=70.6
Q ss_pred ceEEEeCCCChHHHHHHHHHHcC-CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNG-HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN 294 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~-~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~ 294 (492)
++..++.+.++. ++.+.+.+++ +..+||.++ ++++|++..+|+++....... ..+.++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~---------~~~~~i~~~------ 63 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKD---------LSDLPIGEV------ 63 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCC---------ccccCHHHh------
Confidence 345688999998 9999998888 667788763 789999986554332211100 001122221
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
+.+.... ++.... .++.++++.|.+.+.+ ++|+ |++|.++|+||.+
T Consensus 64 -------~~~~~~~--v~~~~~------------------~~l~~a~~~~~~~~~~~~pVv------d~~~~~~Gvit~~ 110 (115)
T cd04620 64 -------MTQPVVT--LQESEI------------------QDIFTALSLFRQHQIRHLPVL------DDQGQLIGLVTAE 110 (115)
T ss_pred -------cCCCcEE--Eecccc------------------cCHHHHHHHHHHhCCceEEEE------cCCCCEEEEEEhH
Confidence 1111111 122110 1356789999999988 9999 6789999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 111 dl~~ 114 (115)
T cd04620 111 SIRQ 114 (115)
T ss_pred Hhhc
Confidence 9975
No 70
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.41 E-value=1.7e-06 Score=74.70 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=72.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
+..+++.++++. ++++.+..++.+.+||.++ .++++|+|...++.+..... .+ . ...++.++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~-~~----~----~~~~~~~~------- 63 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGG-AD----L----QKVPVGVI------- 63 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcC-CC----c----cCCCHHHH-------
Confidence 457889999998 8999998899999999974 36799999966543332211 00 0 01111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC---CcEEEEec
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD---EEVIGIIT 371 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~---g~vvGIIT 371 (492)
+.+......++.. .++.++++.|.+++.+ ++|+ |++ |+++|+||
T Consensus 64 ------~~~~~~~~~v~~~--------------------~~l~~~~~~~~~~~~~~lpVv------d~~~~~~~l~Gvit 111 (118)
T cd04617 64 ------MTRMPNITTTTPE--------------------ESVLEAAKKLIEHQVDSLPVV------EKVDEGLEVIGRIT 111 (118)
T ss_pred ------hCCCCCcEEECCC--------------------CcHHHHHHHHHHcCCCEeeEE------eCCCccceEEEEEE
Confidence 1100001112222 2366789999999988 9999 555 68999999
Q ss_pred hhHHHH
Q 011147 372 LEDVME 377 (492)
Q Consensus 372 lEDViE 377 (492)
.+|+++
T Consensus 112 ~~~l~~ 117 (118)
T cd04617 112 KTNITK 117 (118)
T ss_pred hhheec
Confidence 999864
No 71
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.40 E-value=2.7e-06 Score=72.69 Aligned_cols=119 Identities=10% Similarity=0.131 Sum_probs=73.1
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++++.+.+.++..+||+++ ++++|+++..++.......... ....+. .+...
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~-----------~~~~~~-~~~~~- 65 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATT-----------LDIWEL-YYLLS- 65 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccc-----------ccchhh-hhhhc-
Confidence 456789999998 9999999999999999975 8999999965543322110000 000000 00000
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
......+++. ....++.+. ++.++++.|++.+.. ++|+ |++|+++|+||..|
T Consensus 66 ~~~~~~~~~~-~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvvt~~d 118 (122)
T cd04585 66 KIKVSDIMTR-DPITVSPDA--------------------SVEEAAELMLERKISGLPVV------DDQGRLVGIITESD 118 (122)
T ss_pred ccCHHHhccC-CCeEeCCCC--------------------cHHHHHHHHHHcCCCceeEE------CCCCcEEEEEEHHH
Confidence 0000011100 111123322 256778999999888 9898 67799999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 119 i~~ 121 (122)
T cd04585 119 LFR 121 (122)
T ss_pred hhh
Confidence 985
No 72
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.40 E-value=2.5e-06 Score=74.41 Aligned_cols=121 Identities=15% Similarity=0.272 Sum_probs=73.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccc--hhhH--HhhhccCCCcccccc
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDS--KEIA--EMEKSKAPMQHDINI 291 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~--~~~~--~~~~~~~~v~~v~~~ 291 (492)
++..++.++++. ++.+.+.+.+++.+||++++ +.++|+++.+|+++.+.+.-... ...+ .....+.++.++
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 76 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA--- 76 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH---
Confidence 456788999998 99999999999999999754 78999999776554332211000 0000 000000111111
Q ss_pred cchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEe
Q 011147 292 NSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGII 370 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGII 370 (492)
+.+. ..+++... .+.++++.|.+.+.+ ++|++. |++|+++|+|
T Consensus 77 ----------~~~~--~~~v~~~~--------------------~l~~~l~~~~~~~~~~~~V~~~----~~~~~~~Gvi 120 (128)
T cd04632 77 ----------MSSP--VITASPND--------------------SVRDAVDRMLENDDSSVVVVTP----DDDTKVVGIL 120 (128)
T ss_pred ----------hcCC--CceECCCC--------------------cHHHHHHHHHhCCCCeEeEecc----CCCCcEEEEE
Confidence 1111 11123332 256678999988877 766620 2458999999
Q ss_pred chhHHHH
Q 011147 371 TLEDVME 377 (492)
Q Consensus 371 TlEDViE 377 (492)
|.+|+++
T Consensus 121 t~~di~~ 127 (128)
T cd04632 121 TKKDVLR 127 (128)
T ss_pred EhHhhhc
Confidence 9999986
No 73
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.38 E-value=4.9e-06 Score=69.86 Aligned_cols=105 Identities=10% Similarity=0.147 Sum_probs=71.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++.+.+.+.++.++||++++ ++++|+++.+|+ .+.... ..++.++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl----~~~~~~----------~~~v~~~------- 59 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESL----EQAYKE----------AKSLEDI------- 59 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHH----HHHhhc----------CCcHhHh-------
Confidence 556789999998 99999988999999999753 689999984443 221110 1112222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++.+. ++.++++.|++.+.+ ++|+ +++|+++|+||.+|
T Consensus 60 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~vv------~~~g~~~Gvit~~~ 105 (109)
T cd04583 60 ------MLED--VFTVQPDA--------------------SLRDVLGLVLKRGPKYVPVV------DEDGKLVGLITRSS 105 (109)
T ss_pred ------hcCC--ceEECCCC--------------------cHHHHHHHHHHcCCceeeEE------CCCCeEEEEEehHH
Confidence 1100 11123332 255678999888877 9998 67899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 106 l~~ 108 (109)
T cd04583 106 LVD 108 (109)
T ss_pred hhc
Confidence 975
No 74
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.37 E-value=3.4e-06 Score=70.99 Aligned_cols=106 Identities=11% Similarity=0.203 Sum_probs=71.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.+.++. ++.+.+.+.+++++||++++ ++++|+++.+++. +... .+.++.++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~----~~~~----------~~~~v~~~------- 59 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLR----FETD----------LDKPVSEV------- 59 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHee----eccc----------CCCCHHHh-------
Confidence 456788999998 99999988999999999754 7899999844321 1100 01122222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+. .......+.. .++.++++.|++.+.+ ++|+ |++|+++|+||.+|
T Consensus 60 ------~~-~~~~~~~~~~--------------------~~l~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvi~~~d 106 (110)
T cd04601 60 ------MT-PENLLTTVEG--------------------TSLEEALELLHEHKIEKLPVV------DDEGKLKGLITVKD 106 (110)
T ss_pred ------cc-cCceEEecCC--------------------CCHHHHHHHHHHhCCCeeeEE------cCCCCEEEEEEhhh
Confidence 10 0000001112 1356789999999988 8888 67899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 107 il~ 109 (110)
T cd04601 107 IEK 109 (110)
T ss_pred hhc
Confidence 985
No 75
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.37 E-value=3.2e-06 Score=71.61 Aligned_cols=109 Identities=16% Similarity=0.257 Sum_probs=71.6
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++++.+.+++++.+||+++ ++++|+++..|+++.+...-.. ..+..+.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~--------~~~~~~~~~------- 63 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLK--------PREVPVGEV------- 63 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCC--------cccCCHHHh-------
Confidence 456788999998 9999999999999999985 3899999966554333211000 001111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ...++... ++.++++.|.+.+.+ ++|+ |++ +++|+||.+|
T Consensus 64 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~-~~~Gvi~~~d 108 (112)
T cd04802 64 ------MSTP--LITIDPNA--------------------SLNEAAKLMAKHGIKRLPVV------DDD-ELVGIVTTTD 108 (112)
T ss_pred ------cCCC--cEEECCCC--------------------CHHHHHHHHHHcCCCeeEEe------eCC-EEEEEEEhhh
Confidence 1111 11123332 256779999999988 8888 444 8999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 109 i~~ 111 (112)
T cd04802 109 IVM 111 (112)
T ss_pred hhc
Confidence 985
No 76
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.36 E-value=3.8e-06 Score=70.67 Aligned_cols=103 Identities=13% Similarity=0.271 Sum_probs=70.5
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.++++ +... +.++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~----~~~~-----------~~~~~~~------- 57 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLL----RNPE-----------EEQLALL------- 57 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHH----hccc-----------cchHHHH-------
Confidence 577899999997 89999988899999999754 7899999844432 1110 0011111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.+. ..+++..++ +.++++.|.+.+.+ ++|+ | +|+++|+||.+|
T Consensus 58 ------~~~~--~~~v~~~~~--------------------l~~~~~~~~~~~~~~~~Vv------d-~~~~~G~it~~d 102 (106)
T cd04638 58 ------MTRD--PPTVSPDDD--------------------VKEAAKLMVENNIRRVPVV------D-DGKLVGIVTVAD 102 (106)
T ss_pred ------hcCC--CceECCCCC--------------------HHHHHHHHHHcCCCEEEEE------E-CCEEEEEEEHHH
Confidence 1111 111233322 55678999999988 8888 4 579999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 103 ~~~ 105 (106)
T cd04638 103 IVR 105 (106)
T ss_pred hhc
Confidence 875
No 77
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.35 E-value=3.4e-06 Score=70.75 Aligned_cols=103 Identities=11% Similarity=0.175 Sum_probs=70.6
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++++.+.+.++.++||+++ .++++|+++..|++ +... ..+.++
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~----~~~~------------~~~~~~------- 56 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDA-DGQPLGFVTRREAA----RASG------------GCCGDH------- 56 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHH----Hhcc------------cchhhh-------
Confidence 456788999997 9999998889999999964 37899999854432 2111 011111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+ +.... .++... .+.++++.|.+.+.. ++|+ |++|+++|+||..|
T Consensus 57 ------~-~~~~~-~~~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvi~~~~ 102 (106)
T cd04582 57 ------A-EPFKV-TVSVDD--------------------DLRIVLSRMFAHDMSWLPCV------DEDGRYVGEVTQRS 102 (106)
T ss_pred ------c-ccCCE-EECCCC--------------------CHHHHHHHHHHCCCCeeeEE------CCCCcEEEEEEHHH
Confidence 1 00001 012222 256779999999988 8999 78899999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
++.
T Consensus 103 l~~ 105 (106)
T cd04582 103 IAD 105 (106)
T ss_pred hhc
Confidence 875
No 78
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=3.4e-06 Score=72.49 Aligned_cols=117 Identities=11% Similarity=0.216 Sum_probs=72.8
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccc-hhhHHhhhccCCCcccccccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDS-KEIAEMEKSKAPMQHDININSN 294 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~-~~~~~~~~~~~~v~~v~~~~~~ 294 (492)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.+++++.+....... ...........++.++
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 72 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDI------ 72 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHH------
Confidence 456789999998 9999998889999999985 89999999766543322110000 0000000000111111
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
+.+ ....++... ++.++++.|.+.+.+ ++|+ |+ |+++|+||..
T Consensus 73 -------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~Gvi~~~ 116 (121)
T cd04633 73 -------MTR--PVITIEPDT--------------------SVSDVASLMLENNIGGLPVV------DD-GKLVGIVTRT 116 (121)
T ss_pred -------ccC--CceEECCCC--------------------cHHHHHHHHHHcCCCcccEE------EC-CEEEEEEEHH
Confidence 111 111123322 256789999998888 8888 56 9999999999
Q ss_pred HHHH
Q 011147 374 DVME 377 (492)
Q Consensus 374 DViE 377 (492)
|+++
T Consensus 117 dl~~ 120 (121)
T cd04633 117 DILR 120 (121)
T ss_pred Hhhc
Confidence 9985
No 79
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.32 E-value=5.1e-06 Score=69.99 Aligned_cols=98 Identities=10% Similarity=0.137 Sum_probs=67.8
Q ss_pred EEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhh
Q 011147 219 SLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQR 298 (492)
Q Consensus 219 ~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 298 (492)
.++.++++. ++++.+.+.+++++||+++ ++++|++...++ .+.. ..++.+.
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l----~~~~------------~~~~~~~---------- 55 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDI----ENAT------------YGDVVDY---------- 55 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHH----hhhc------------ccchhhh----------
Confidence 578899998 9999999999999999985 889999983332 2111 0011111
Q ss_pred hccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHH
Q 011147 299 QGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVME 377 (492)
Q Consensus 299 ~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViE 377 (492)
+.. ...+++.+. ++.++++.|++.+.. ++|+ | +|.++|+||.+|+++
T Consensus 56 ---~~~--~~~~v~~~~--------------------~l~~a~~~~~~~~~~~~~Vv------~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 56 ---IVR--GIPYVRLTS--------------------TAEEAWEVMMKNKTRWCPVV------D-DGKFKGIVTLDSILD 103 (104)
T ss_pred ---hhc--CCcEEcCCC--------------------CHHHHHHHHHHcCcceEEEE------E-CCEEEEEEEHHHhhc
Confidence 100 011123332 256679999999998 8888 4 689999999999875
No 80
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.32 E-value=3.2e-06 Score=71.62 Aligned_cols=102 Identities=13% Similarity=0.232 Sum_probs=66.8
Q ss_pred EeCCCChHHHHHHHHHHcCC-----ccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147 220 LDINSRLDEKTMGLIISNGH-----SRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN 294 (492)
Q Consensus 220 l~~~~tl~~e~~~~i~~~~~-----SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~ 294 (492)
++.++++. ++++.+.++++ ..+||+++ .++++|+++.+++ .+. . .+.++.++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l----~~~-~----------~~~~v~~~------ 58 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDL----LLA-D----------PDTPVSDI------ 58 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHH----hcC-C----------CcchHHHH------
Confidence 46788897 89998887774 57898864 3789999984332 211 0 01122222
Q ss_pred hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147 295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE 373 (492)
+.+. ...++... ++.++++.|.+.+.+ ++|+ |++|+++|+||.+
T Consensus 59 -------~~~~--~~~i~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvit~~ 103 (109)
T cd04606 59 -------MDTD--VISVSADD--------------------DQEEVARLFEKYDLLALPVV------DEEGRLVGIITVD 103 (109)
T ss_pred -------hCCC--CeEEcCCC--------------------CHHHHHHHHHHcCCceeeeE------CCCCcEEEEEEhH
Confidence 1101 11123222 255678999998888 8998 6789999999999
Q ss_pred HHHHHH
Q 011147 374 DVMEEL 379 (492)
Q Consensus 374 DViEeL 379 (492)
|+++.+
T Consensus 104 dll~~~ 109 (109)
T cd04606 104 DVIDVI 109 (109)
T ss_pred HhhhhC
Confidence 999864
No 81
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.31 E-value=5.6e-06 Score=70.99 Aligned_cols=118 Identities=9% Similarity=0.124 Sum_probs=71.9
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+++++..-.........-.......++.++
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~------- 72 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEI------- 72 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHH-------
Confidence 456788999998 99999999999999999764 789999996654332111110000000000000111111
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+.. ....++.+. ++.++++.|.+++.+ ++|+ ++ |+++|+||..|
T Consensus 73 ------~~~--~~~~i~~~~--------------------~l~~~~~~~~~~~~~~~~V~------~~-~~~~Gvv~~~d 117 (121)
T cd04584 73 ------MTK--DVITVHPLD--------------------TVEEAALLMREHRIGCLPVV------ED-GRLVGIITETD 117 (121)
T ss_pred ------hhC--CCeEECCCC--------------------cHHHHHHHHHHcCCCeEEEe------eC-CEEEEEEEHHH
Confidence 110 111123322 256678999998887 8888 44 89999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 118 i~~ 120 (121)
T cd04584 118 LLR 120 (121)
T ss_pred hhc
Confidence 985
No 82
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.30 E-value=3.6e-06 Score=91.61 Aligned_cols=150 Identities=10% Similarity=0.156 Sum_probs=97.0
Q ss_pred ccCHHHHHHHHHhhccccCCCCCC----Ch-hHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCC
Q 011147 165 LLRRAELKTLVDMHGNEAGKGGEL----TH-DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH 239 (492)
Q Consensus 165 ~~s~eEL~~lv~~~~~e~~~~g~L----~~-~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~ 239 (492)
.+++.++-..+...|- -|.+ +. ++.+.++.+-+.+ +.|++ +.+++++++++. ++++.+.++++
T Consensus 60 ~vt~~~ma~a~a~~Gg----lGvi~~~~~~e~~~~~v~kvk~~e-----~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~ 127 (495)
T PTZ00314 60 TVTEHKMAIAMALMGG----IGVIHNNCSIEEQVEEVRKVKRFE-----NGFIM--DPYVLSPNHTVA-DVLEIKEKKGF 127 (495)
T ss_pred ccccHHHHHHHHHCCC----eEEecCCCCHHHHHHHHhhccccc-----ccccc--CCeecCCCCCHH-HHHHHHHHcCC
Confidence 4667777766653221 1222 22 3456666665444 46653 557899999998 99999999999
Q ss_pred ccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCC
Q 011147 240 SRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNS 317 (492)
Q Consensus 240 SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~ 317 (492)
+++||.+++ .++++|+|+.+|+. ...+ .+.++.++ +++......++...
T Consensus 128 s~vpVvd~~~~~gkLvGIVt~~DL~-----~~~~---------~~~~V~di-------------Mt~~~~lvtv~~~~-- 178 (495)
T PTZ00314 128 SSILITVDGKVGGKLLGIVTSRDID-----FVKD---------KSTPVSEV-------------MTPREKLVVGNTPI-- 178 (495)
T ss_pred cEEEEEeCCccCCeEEEEEEHHHHh-----hccc---------CCCCHHHh-------------hCCcCCceEeCCCC--
Confidence 999999753 26799999955421 1110 12223333 11000011122222
Q ss_pred CCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147 318 PSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEEL 379 (492)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeL 379 (492)
++.++++.|++.+.+ ++|+ |++++++|+||..|+++..
T Consensus 179 ------------------sl~eAl~lm~e~~i~~LPVV------d~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 179 ------------------SLEEANEVLRESRKGKLPIV------NDNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------------------CHHHHHHHHHHcCCCeEEEE------cCCCcEEEEEEehHhhhcc
Confidence 266789999999999 9999 7889999999999999875
No 83
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.29 E-value=2.7e-06 Score=92.68 Aligned_cols=109 Identities=10% Similarity=0.066 Sum_probs=76.2
Q ss_pred EEEeCCCChHHHHHHHHHHcCCccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 218 FSLDINSRLDEKTMGLIISNGHSRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 218 ~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
.++++++++. ++++.+.+++++.+||.+++ .+.++|+|+.+|+. .... ..+.+++++
T Consensus 108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr----~~~~---------~~~~~V~dI------- 166 (502)
T PRK07107 108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR----ISRM---------SLDTKVKDF------- 166 (502)
T ss_pred CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh----cccc---------CCCCCHHHH-------
Confidence 4789999998 99999999999999999852 46899999966531 1100 112233333
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
|++......++.. .++.++++.|++++.. ++|+ |++|+++|+||..|
T Consensus 167 ------Mt~~~~~itv~~d--------------------~~l~eAl~lM~e~~i~~LPVV------D~~g~LvGIIT~~D 214 (502)
T PRK07107 167 ------MTPFEKLVTANEG--------------------TTLKEANDIIWDHKLNTLPIV------DKNGNLVYLVFRKD 214 (502)
T ss_pred ------hCCCCCeEEECCC--------------------CcHHHHHHHHHHcCCCEEEEE------cCCCeEEEEEEhHH
Confidence 1110011111222 1367789999999999 9999 78899999999999
Q ss_pred HHHHH
Q 011147 375 VMEEL 379 (492)
Q Consensus 375 ViEeL 379 (492)
+++..
T Consensus 215 ilk~~ 219 (502)
T PRK07107 215 YDSHK 219 (502)
T ss_pred HHhcc
Confidence 98864
No 84
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=8.8e-06 Score=73.09 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=38.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA 263 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~ 263 (492)
++++++.++++. ++.+.+.+.+++.+||+++ +.++|+++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~ 46 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILK 46 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHH
Confidence 457789999998 9999999999999999985 78999999666543
No 85
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.18 E-value=2.7e-06 Score=64.33 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=47.3
Q ss_pred cccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147 207 AKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV 264 (492)
Q Consensus 207 V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~ 264 (492)
|+|+|++ ++.+++.++++. ++++.+.+++++++||++++ +.++|+++.+|+++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence 5789997 889999999998 99999999999999999754 899999996665443
No 86
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.18 E-value=9.2e-06 Score=87.96 Aligned_cols=119 Identities=11% Similarity=0.124 Sum_probs=84.8
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS 281 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~ 281 (492)
++..++.++|+. +.+++..++++. ++.+.+.+++++.+||.++ +.++|+|..+| +... ..
T Consensus 85 v~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rD--------L~~~-------~~ 144 (475)
T TIGR01303 85 VAFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSD--------LLGV-------DR 144 (475)
T ss_pred Hhhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHH--------hhcC-------CC
Confidence 446778889975 667899999998 9999999999999999874 58999999544 2211 00
Q ss_pred cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147 282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP 360 (492)
Q Consensus 282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p 360 (492)
..+++++ +++. ...++... ++.++++.|.+++.+ ++|+
T Consensus 145 ~~~V~dI-------------Mt~~--litv~~~~--------------------sL~eAl~lM~~~~i~~LPVV------ 183 (475)
T TIGR01303 145 FTQVRDI-------------MSTD--LVTAPADT--------------------EPRKAFDLLEHAPRDVAPLV------ 183 (475)
T ss_pred CCCHHHH-------------ccCC--ceEeCCCC--------------------cHHHHHHHHHHcCCCEEEEE------
Confidence 1223332 1111 11123332 266789999999999 9999
Q ss_pred CCCCcEEEEechhHHHHHHcc
Q 011147 361 SVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 361 de~g~vvGIITlEDViEeLlg 381 (492)
|++|+++|+||..|+++..-.
T Consensus 184 D~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 184 DADGTLAGILTRTGALRATIY 204 (475)
T ss_pred cCCCeEEEEEEHHHHHHHHhC
Confidence 788999999999999985543
No 87
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.10 E-value=2.6e-05 Score=65.99 Aligned_cols=109 Identities=6% Similarity=0.134 Sum_probs=69.9
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
++..++.++++. ++.+.+.+.++..++|.++ ++++|++...++++.+... .. .. .+.++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~-~~---~~----~~~~v~~~------- 63 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQH-GA---GV----LDTTVRAI------- 63 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhc-CC---ch----hcCCHHHH-------
Confidence 567789999998 8999988888878877753 7899999966543322211 00 00 01122222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED 374 (492)
+. .. ...++... ++.++++.|.+.+.. ++|+ + +|+++|+||..|
T Consensus 64 ------~~-~~-~~~v~~~~--------------------~l~~a~~~m~~~~~~~l~Vv------~-~~~~~Gvvt~~d 108 (112)
T cd04625 64 ------MN-PE-PIVASPDD--------------------SIDEVRRLMVERHLRYLPVL------D-GGTLLGVISFHD 108 (112)
T ss_pred ------hC-CC-CeEECCCC--------------------CHHHHHHHHHHcCCCeeeEE------E-CCEEEEEEEHHH
Confidence 11 00 01112221 366789999998888 8888 4 589999999999
Q ss_pred HHH
Q 011147 375 VME 377 (492)
Q Consensus 375 ViE 377 (492)
+++
T Consensus 109 l~~ 111 (112)
T cd04625 109 VAK 111 (112)
T ss_pred hhc
Confidence 975
No 88
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.10 E-value=1.3e-05 Score=68.62 Aligned_cols=111 Identities=12% Similarity=0.105 Sum_probs=68.8
Q ss_pred eEEEeCCCChHHHHHHHHHHcC-CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147 217 IFSLDINSRLDEKTMGLIISNG-HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL 295 (492)
Q Consensus 217 v~~l~~~~tl~~e~~~~i~~~~-~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~ 295 (492)
+..++.++++. ++++.+.+.+ ++++||.++ ++++|++..+++++.+.+.. ..+. ..+..+.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~-----~~~~-~~~~~v~~~------- 66 (119)
T cd04598 3 APTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPY-----GRAL-YGKKPVSEV------- 66 (119)
T ss_pred cCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchh-----hHHH-HcCCcHHHh-------
Confidence 44678899998 9999988877 899999986 89999998655433222110 0000 001122222
Q ss_pred hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCc----ceEEecccCCCCCCCcEEEEec
Q 011147 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDV----KISKEELESLPSVDEEVIGIIT 371 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~----~~lVv~~~~~pde~g~vvGIIT 371 (492)
+... ...++.+. .+.++++.|.+.+. ..+|+ +++|+++|+||
T Consensus 67 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~~~~vv------~~~~~~~Gvvs 112 (119)
T cd04598 67 ------MDPD--PLIVEADT--------------------PLEEVSRLATGRDSQNLYDGFIV------TEEGRYLGIGT 112 (119)
T ss_pred ------cCCC--cEEecCCC--------------------CHHHHHHHHHcCCcccccccEEE------eeCCeEEEEEE
Confidence 1111 11123322 24567888887764 24567 67899999999
Q ss_pred hhHHHH
Q 011147 372 LEDVME 377 (492)
Q Consensus 372 lEDViE 377 (492)
..|+++
T Consensus 113 ~~di~~ 118 (119)
T cd04598 113 VKDLLR 118 (119)
T ss_pred HHHHhc
Confidence 999986
No 89
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.10 E-value=3.5e-05 Score=82.71 Aligned_cols=135 Identities=17% Similarity=0.255 Sum_probs=96.7
Q ss_pred CCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCC---ccceEE--eCCCCceEEEEEccch
Q 011147 187 ELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH---SRVPIY--VGTPTNIIGAILGHSH 261 (492)
Q Consensus 187 ~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~---SRiPV~--~~~~d~IvGiv~~~d~ 261 (492)
.++++|++.++..+...+-+++.+|+. +.+++..+.|++ ++++.+++.+. +++.+| +. .+.++|++.
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvs---- 185 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDE-KGKLLGVVS---- 185 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECC-ccceEEEee----
Confidence 378899999999999999999999995 889999999998 99999995543 455555 43 356999998
Q ss_pred HHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHH
Q 011147 262 MAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCL 341 (492)
Q Consensus 262 m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l 341 (492)
++++--.+ + +.+++++ |. .. +..++..+ |.+++.
T Consensus 186 ----l~~Ll~a~--~-----~~~i~~i-------------m~-~~-~~~V~~~~--------------------dqeevA 219 (451)
T COG2239 186 ----LRDLLTAE--P-----DELLKDL-------------ME-DD-VVSVLADD--------------------DQEEVA 219 (451)
T ss_pred ----HHHHhcCC--c-----HhHHHHH-------------hc-cc-ceeecccC--------------------CHHHHH
Confidence 33332111 1 1122222 11 11 11122221 345678
Q ss_pred HHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 342 KKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 342 ~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
+.|++.+.- ++|| |+++..+|+||.+||++.+-.
T Consensus 220 ~~~~~ydl~a~PVV------d~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 220 RLFEKYDLLAVPVV------DEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HHHHHhCCeecceE------CCCCceeeeeeHHHHHHHHHH
Confidence 899999888 9999 899999999999999988843
No 90
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.05 E-value=1.6e-05 Score=79.10 Aligned_cols=113 Identities=11% Similarity=0.126 Sum_probs=77.8
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP 284 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~ 284 (492)
.+|+|+|.+. ++..++.++++. ++++.+.+.+++.+||.+++ ++++|++...|+.+...... ..+.+
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~----------~~~~~ 221 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGG----------SLKSE 221 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCC----------cccCc
Confidence 6899999864 267899999998 99999988999999999753 78999999766543211100 01122
Q ss_pred CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147 285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD 363 (492)
Q Consensus 285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~ 363 (492)
++++ +.+.... ++... ++.++++.|.+.+.+ ++|+ |++
T Consensus 222 v~~i-------------m~~~~~~--v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~ 260 (268)
T TIGR00393 222 VRDF-------------MTLGPKT--FKLDA--------------------LLLEALEFLERRKITSLVVV------DDH 260 (268)
T ss_pred HHHh-------------CCCCCeE--ECCCC--------------------cHHHHHHHHHHcCCcEEEEE------CCC
Confidence 3332 1111111 12222 366789999999988 9999 778
Q ss_pred CcEEEEec
Q 011147 364 EEVIGIIT 371 (492)
Q Consensus 364 g~vvGIIT 371 (492)
|+++|+|+
T Consensus 261 g~l~GvI~ 268 (268)
T TIGR00393 261 NKVLGVLH 268 (268)
T ss_pred CeEEEEEC
Confidence 99999985
No 91
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.96 E-value=1.5e-05 Score=86.51 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=91.2
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCC----ceEEEEEccchHHHHHHhhccchhhHH
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPT----NIIGAILGHSHMAVVVKCKNDSKEIAE 277 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d----~IvGiv~~~d~m~~vvk~l~~~~~~~~ 277 (492)
+++.+|+|+|.+ ++++++.-+.+. .+++.+..+.|..|||+|+..+ .+.|++.++ |+-.++|.....++.+.
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRs-hl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRS-HLLVLLKKRVFVEESRS 654 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHH-HHHHHHHhhhhhccCcc
Confidence 578899999997 999999999998 8999999999999999987554 467777643 44444444322211111
Q ss_pred hhhccCCCcccccc---cchhh------hhhcc--cc------ccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHH
Q 011147 278 MEKSKAPMQHDINI---NSNLK------QRQGE--LK------GNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLC 340 (492)
Q Consensus 278 ~~~~~~~v~~v~~~---~~~~~------~~~~~--~~------~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~ 340 (492)
.+ +.+.++.-+. .++.. .+..+ +. -+..|+.+|++++ +..+
T Consensus 655 ~~--~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mS--------------------l~k~ 712 (762)
T KOG0474|consen 655 TF--DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMS--------------------LAKA 712 (762)
T ss_pred cc--CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccc--------------------hHHH
Confidence 11 1111100000 00000 00000 00 1122333343332 5567
Q ss_pred HHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHH-HHHcc
Q 011147 341 LKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVM-EELLQ 381 (492)
Q Consensus 341 l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDVi-EeLlg 381 (492)
+..|++-.-+ .+|+ +....++||+|..|++ ++.+|
T Consensus 713 ~~lFR~lGLRhLlVv------~~~~~~~gilTR~D~~~~~~l~ 749 (762)
T KOG0474|consen 713 FILFRQLGLRHLLVV------PKTNRVVGILTRKDLARYRILG 749 (762)
T ss_pred HHHHHHhcceeEEEe------cCCCceeEEEehhhhhhHHHhc
Confidence 8999998888 9999 5667789999999999 66666
No 92
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.92 E-value=7.8e-05 Score=63.30 Aligned_cols=113 Identities=19% Similarity=0.336 Sum_probs=75.1
Q ss_pred ccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcc
Q 011147 208 KDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQH 287 (492)
Q Consensus 208 ~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~ 287 (492)
+++|. .++.++..+.++. ++...+.+++++++||.++ +.++|++..+|+++.+....... .++.+
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~----------~~v~~ 66 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRL----------LPVKE 66 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCcc----------ccHHH
Confidence 34555 5778999999998 9999999999999999975 36999999666544333221100 01221
Q ss_pred cccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhH-cCcc-eEEecccCCCCCCC-
Q 011147 288 DININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWER-QDVK-ISKEELESLPSVDE- 364 (492)
Q Consensus 288 v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~-~~~~-~lVv~~~~~pde~g- 364 (492)
+ +.++ ...+... .++.++.+.|.+ .+.+ ++|+ ++++
T Consensus 67 v-------------~~~~--~~~~~~~--------------------~~~~~~~~~m~~~~~~~~lpVv------~~~~~ 105 (117)
T COG0517 67 V-------------MTKP--VVTVDPD--------------------TPLEEALELMVERHKIRRLPVV------DDDGG 105 (117)
T ss_pred h-------------ccCC--cEEECCC--------------------CCHHHHHHHHHHHcCcCeEEEE------ECCCC
Confidence 1 1100 0111111 125567899998 5777 9999 5665
Q ss_pred cEEEEechhHHH
Q 011147 365 EVIGIITLEDVM 376 (492)
Q Consensus 365 ~vvGIITlEDVi 376 (492)
+++||||..|++
T Consensus 106 ~lvGivt~~di~ 117 (117)
T COG0517 106 KLVGIITLSDIL 117 (117)
T ss_pred eEEEEEEHHHcC
Confidence 999999999974
No 93
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.80 E-value=5.6e-05 Score=81.51 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=92.9
Q ss_pred cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147 201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK 280 (492)
Q Consensus 201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~ 280 (492)
+|--.+|.++|+- +.+.+++..++. ++..++.+.|.|-+-|.++ .+...|||+.+|.+..|+.+-.+.
T Consensus 145 e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~~-------- 212 (610)
T COG2905 145 EFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRSK-------- 212 (610)
T ss_pred hHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCCc--------
Confidence 3445678888884 667899999997 9999999999997777764 477899999999998888764432
Q ss_pred ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCC
Q 011147 281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESL 359 (492)
Q Consensus 281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~ 359 (492)
..+|.++ |+.+... +... .-+.+|+-.|-+++.| ++|.
T Consensus 213 -~~~V~ev-------------mT~p~~s--vd~~--------------------~~~feAml~m~r~~I~hl~V~----- 251 (610)
T COG2905 213 -TQKVSEV-------------MTSPVIS--VDRG--------------------DFLFEAMLMMLRNRIKHLPVT----- 251 (610)
T ss_pred -ccchhhh-------------hccCcee--ecCc--------------------chHHHHHHHHHHhCCceeeee-----
Confidence 2345544 2211111 1111 2367788899999999 8888
Q ss_pred CCCCCcEEEEechhHHHHHHcc
Q 011147 360 PSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 360 pde~g~vvGIITlEDViEeLlg 381 (492)
++|.++||||+.||+.-.-+
T Consensus 252 --e~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 252 --EDGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred --cCCeeeEEeeHHHHHHhhCC
Confidence 89999999999999876654
No 94
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.80 E-value=0.0002 Score=79.03 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=50.9
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK 267 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk 267 (492)
..+|+|+|++ ++.+++.++++. ++++.+.+++++++||++++ ++++|+|..+|+.+.+.+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~ 126 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMD 126 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHh
Confidence 4689999985 778899999998 99999999999999999753 789999998776665554
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=97.27 E-value=0.00057 Score=51.41 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=35.5
Q ss_pred HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
+.++++.|++.+.+ ++|+ |++|+++|+||..|+++.+.+
T Consensus 18 l~~~~~~~~~~~~~~~~V~------d~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 18 LEEALEIMRKNGISRLPVV------DEDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HHHHHHHHHHHTSSEEEEE------STTSBEEEEEEHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCcEEEEE------ecCCEEEEEEEHHHHHhhhhC
Confidence 66789999999999 9999 799999999999999998864
No 96
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.22 E-value=0.0016 Score=68.82 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=79.0
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC-Ccccccccch
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP-MQHDININSN 294 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~-v~~v~~~~~~ 294 (492)
.+..++.+.++. ++++.+...+.|.+||++.. ++.+|+....|.+ ....+..+... +.. +.+.
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~----~l~~~~~~~~~----~~~~l~~~------ 301 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVI----HLAREGTYNNL----DLSCLSEA------ 301 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-Cceecceehhhhh----hhhhcCccCcc----chhHHHHH------
Confidence 588899999997 99999999999999999754 6669999865532 22111111110 000 1111
Q ss_pred hhhhhccccccccccccC-CCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEech
Q 011147 295 LKQRQGELKGNVQNEQFN-AYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITL 372 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~vp-~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITl 372 (492)
...|+... -+ -+...++ .|+.++.++.+++.| +.|| |++|.++|+||+
T Consensus 302 ------~~~~~~~~--~~vvtc~~~s----------------sL~~vi~~lv~~~vHRl~VV------d~~~~l~GvvSL 351 (381)
T KOG1764|consen 302 ------LSHRPIRF--EGVVTCRPTS----------------TLAEVIDKLVAHRVHRLWVV------DEDGVLVGVISL 351 (381)
T ss_pred ------hhhccccc--CccEEEeecc----------------hHHHHHHHHHhcCceEEEEE------cCCCcEEEEeeH
Confidence 00011100 00 0011111 267789999999999 9999 789999999999
Q ss_pred hHHHHHHcc
Q 011147 373 EDVMEELLQ 381 (492)
Q Consensus 373 EDViEeLlg 381 (492)
.|++.-++.
T Consensus 352 sDil~~l~~ 360 (381)
T KOG1764|consen 352 SDILSYLVL 360 (381)
T ss_pred HHHHHHHHh
Confidence 999999986
No 97
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.92 E-value=0.0014 Score=55.56 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=47.7
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.++.++|.|..++..++.++++. ++++.+.+++.+++||+++ .++++|+++.+|+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di 111 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVED-SGQVIGLITEADL 111 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcC-CCcEEEEEeccce
Confidence 467899998766677899999998 9999999999999999975 3689999996654
No 98
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.84 E-value=0.002 Score=54.25 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=47.2
Q ss_pred ccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 200 LDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 200 l~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
.+....++.++|.+ ++.+++.++++. ++++.+.+++.+++||++++ ++++|+|+..|+
T Consensus 54 ~~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di 111 (114)
T cd04604 54 LDILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDL 111 (114)
T ss_pred CccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHh
Confidence 34455679999986 456799999998 99999999999999999743 789999985543
No 99
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.84 E-value=0.0016 Score=55.38 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=45.6
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.++.++|.. +..++..++++. ++++.+.+++.+++||++++ ++++|+|+.+|+
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di 108 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYEREL 108 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHh
Confidence 3468899964 567899999997 99999999999999999754 689999996654
No 100
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.83 E-value=0.002 Score=55.37 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=48.2
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCC--CceEEEEEccch
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTP--TNIIGAILGHSH 261 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~--d~IvGiv~~~d~ 261 (492)
+.+.+++++|+.-.++.+++.++++. ++++.+.++++.++||++++. ++++|+|+..|+
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l 115 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNI 115 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhe
Confidence 34667889997434678999999997 999999999999999998643 579999985543
No 101
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.54 E-value=0.003 Score=53.84 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=46.5
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
.+.+++++|.. ++.+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|++
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~ 112 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDAL 112 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhc
Confidence 34578899964 677899999998 99999999999999999753 6899999966543
No 102
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.49 E-value=0.017 Score=51.70 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=40.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV 265 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v 265 (492)
++..++.++++. ++++.+.+++++.+||+++ .++++|+|..+|+++..
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~ 49 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFL 49 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHH
Confidence 567899999998 9999999999999999975 37899999977655443
No 103
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.44 E-value=0.0049 Score=51.66 Aligned_cols=53 Identities=15% Similarity=0.356 Sum_probs=45.3
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.+++++|.+ ++.+++.++++. ++++.+.+.+++++||+++ ++++|+|...|+
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di 110 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDV 110 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHh
Confidence 5678999965 678899999998 9999999999999999975 789999985543
No 104
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.43 E-value=0.0028 Score=55.11 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=44.4
Q ss_pred cccccccccccCcceEEEe----CCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLD----INSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~----~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
.+.+++++|.+...+..++ .++++. ++++.+.+++.+++||++++.++++|+|+.+|+
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di 123 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDI 123 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHH
Confidence 4567899997644444443 578887 999999999999999998643579999985543
No 105
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=96.42 E-value=0.0058 Score=61.67 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=59.7
Q ss_pred hcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhc
Q 011147 198 GALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKN 270 (492)
Q Consensus 198 ~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~ 270 (492)
+.-.+.+-+||.+|++ .+.++.++++.. |++-.+.+.|+..+||.|+ .+.++|||...|+|+++.+...
T Consensus 308 rlr~~~~~~vk~imt~--~v~tv~pdtpa~-~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 308 RLRFLRPPTVKGIMTT--PVVTVRPDTPAV-ELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred HhhccCCCcccccccC--cceeecCCCcHH-HHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHHHHH
Confidence 3344678899999996 678999999997 9999999999999999985 4899999999999999988753
No 106
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.022 Score=62.70 Aligned_cols=62 Identities=13% Similarity=0.237 Sum_probs=44.1
Q ss_pred ccccccccccCc---ceEEEeCC-CChHHHHHHHHHHcCCccceEE-eCCCCceEEEEEccchHHHHH
Q 011147 204 QKTAKDAMTAMS---KIFSLDIN-SRLDEKTMGLIISNGHSRVPIY-VGTPTNIIGAILGHSHMAVVV 266 (492)
Q Consensus 204 ~~~V~diMtPr~---~v~~l~~~-~tl~~e~~~~i~~~~~SRiPV~-~~~~d~IvGiv~~~d~m~~vv 266 (492)
+....++|-|+. ....+..+ .+++ |....+.++.|+.|||. +++.+..+|++.++++.-.+.
T Consensus 542 ~t~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~ 608 (696)
T KOG0475|consen 542 STLAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAIL 608 (696)
T ss_pred cchhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHh
Confidence 344556666643 24444444 7897 99999999999999998 556677999999777654443
No 107
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.32 E-value=0.0065 Score=52.47 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=43.4
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEc
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILG 258 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~ 258 (492)
.+|+|+|.+ ++..++.++++. ++++.+.+.++..+||+++ .++++|+|..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~-~~~l~Givt~ 107 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDD-DGTPAGIITL 107 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEH
Confidence 679999986 667799999998 9999999999999999975 3689999983
No 108
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=96.32 E-value=0.006 Score=51.76 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=47.0
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.+.++.++|.+ +..+++.++++. ++++.+.+.+++++||+++ .++++|+|+.+|+
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di 119 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDD-QGRLVGIITESDL 119 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECC-CCcEEEEEEHHHh
Confidence 456789999975 678899999998 9999999999999999975 3689999985543
No 109
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.20 E-value=0.0072 Score=66.15 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=50.5
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
..+.+|+|+|+|..++++++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Di 215 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDY 215 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHH
Confidence 45678999999877889999999998 9999999999999999974 3689999996654
No 110
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.18 E-value=0.0097 Score=49.92 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=46.3
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
..++.++|.+ ++.+++.++++. ++++.+.+.++.++||++++.++++|++..+|+
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di 111 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDL 111 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHh
Confidence 4789999986 567899999998 999999999999999997424789999996554
No 111
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.17 E-value=0.0099 Score=49.98 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=44.6
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.+++++|.+ ++.+++.++++. ++++.+.+++..++||.++ ++++|+++.+|+
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl 109 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDV 109 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHh
Confidence 4578999964 567899999997 9999999999999999973 789999995554
No 112
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.16 E-value=0.0077 Score=53.57 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=45.9
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
..+.+++++|++ ++.+++.++++. ++++.+.+.++.++||.++ ++++|+|...+
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~d 131 (135)
T cd04621 78 EVPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTD 131 (135)
T ss_pred cccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHH
Confidence 346689999975 567899999998 9999999999999999975 78999998544
No 113
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.14 E-value=0.0097 Score=50.02 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=38.7
Q ss_pred eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.++.+++++. ++++.|.+++..++||.+++.++++|++..+|+
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~ 95 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRI 95 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhh
Confidence 67899999998 999999999999999998654789999996654
No 114
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.12 E-value=0.0078 Score=52.68 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=45.5
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
...++.++|.+ ++..++.++++. ++++.+.+.+++++||.++ +.++|++..+|+
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl 129 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDI 129 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHh
Confidence 34478899974 678899999998 9999999999999999975 789999986553
No 115
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.10 E-value=0.0075 Score=51.21 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=45.3
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
.+.+++++|.. ++.+++.++++. ++++.+.+.+..++||+++ +.++|+|..+|+
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl 111 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDI 111 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHh
Confidence 34578899953 678899999998 9999999999999999975 789999985543
No 116
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.07 E-value=0.0098 Score=50.29 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=44.8
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.+++++|.+ .+.+++.++++. ++++.+.+++.+++||+++ .++++|+|...|+
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di 110 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDE-EGRVVGLATLDDL 110 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHh
Confidence 3568899965 567899999998 9999999999999999974 3789999985543
No 117
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.01 E-value=0.012 Score=49.56 Aligned_cols=54 Identities=17% Similarity=0.401 Sum_probs=45.2
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
.+.+++++|.+ ++.++..++++. ++++.+.+++...+||++++ +++|+++..|+
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di 109 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDI 109 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhh
Confidence 45578899975 577889999998 99999999999999999753 89999996554
No 118
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.98 E-value=0.0093 Score=50.91 Aligned_cols=55 Identities=13% Similarity=0.334 Sum_probs=46.5
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.+.++.++|.+ +..+++.++++. ++++.+.+.+.+++||+++ ++++|++..+|+
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl 118 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDI 118 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHh
Confidence 456678899964 677899999998 9999999999999999975 789999985543
No 119
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=95.95 E-value=0.013 Score=48.77 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=42.6
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.+.++|.+ ...+++.++++. ++++.+.+.+++.+||++++ ++++|+++.++
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~ 102 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRS 102 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHH
Confidence 47888976 346789999997 99999999999999999753 68999998544
No 120
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=95.94 E-value=0.014 Score=59.95 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=48.5
Q ss_pred cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
.+.+.+|+|+|++ ++.+++.++++. ++++.+.+++..++||.++ ++++|+|...|++
T Consensus 265 ~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil 321 (326)
T PRK10892 265 DLRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLL 321 (326)
T ss_pred CcccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhH
Confidence 3456789999986 678899999998 9999999999999999974 6899999966543
No 121
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.93 E-value=0.011 Score=49.06 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=44.4
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+..++++|.+ ...+++.++++. ++++.+.+++..++||++++ +.++|++..+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di 104 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDV 104 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHh
Confidence 3568999975 457789999998 99999999999999999753 689999985543
No 122
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=95.90 E-value=0.013 Score=49.76 Aligned_cols=54 Identities=13% Similarity=0.332 Sum_probs=44.4
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC-CCceEEEEEccch
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT-PTNIIGAILGHSH 261 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~-~d~IvGiv~~~d~ 261 (492)
.++.++|.+ ++.+++.++++. ++++.+.+++..++||.+++ .++++|+|+..|+
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di 112 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENV 112 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHh
Confidence 347788864 677899999998 99999999999999999754 2579999985554
No 123
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=95.90 E-value=0.014 Score=49.08 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=44.0
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.++.++|.+ ...+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~d 109 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTK 109 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHH
Confidence 678899965 567799999998 99999999999999999754 78999998554
No 124
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.88 E-value=0.012 Score=49.92 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=44.0
Q ss_pred ccccccccccCcceEEEeCC--CChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 204 QKTAKDAMTAMSKIFSLDIN--SRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~--~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
+.++.++|.+ ++.+++.+ +++. ++++.+.+++..++||++++ ++++|+|+..|++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~ 113 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIR 113 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhh
Confidence 4678899965 56677776 6786 89999999999999999753 7899999966543
No 125
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.84 E-value=0.012 Score=50.38 Aligned_cols=57 Identities=16% Similarity=0.350 Sum_probs=47.5
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
....++.++|.. .+.+++.++++. ++++.+.+.+.+++||.++ .++++|+++.+|++
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~ 122 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLI 122 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhh
Confidence 456679999975 678899999998 9999999999999999974 47899999966543
No 126
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.84 E-value=0.012 Score=64.42 Aligned_cols=61 Identities=8% Similarity=0.185 Sum_probs=51.7
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV 265 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v 265 (492)
.+.+|+++|++..++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.+
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVK 221 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence 4678999999876788999999998 9999999999999999974 36899999976654433
No 127
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=95.83 E-value=0.0097 Score=50.68 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=46.7
Q ss_pred cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.....+++++|.+ .+.+++.+++++ ++++.+.+.+++.+||+++ ++++|+++.+|
T Consensus 63 ~~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~d 117 (121)
T cd04584 63 LLLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETD 117 (121)
T ss_pred hhcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHH
Confidence 3556779999976 668899999998 9999999999999999975 78999998544
No 128
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.031 Score=58.80 Aligned_cols=152 Identities=9% Similarity=0.113 Sum_probs=95.1
Q ss_pred cccCHHHHHHHHHhhccccCCCCCC-ChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccc
Q 011147 164 ALLRRAELKTLVDMHGNEAGKGGEL-THDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV 242 (492)
Q Consensus 164 ~~~s~eEL~~lv~~~~~e~~~~g~L-~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRi 242 (492)
..+++.|.-..+..++--+-=...- .+++..+++.+=.|++--+ + +.+.++++.++. ++++.-..+||+.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~---~----~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFI---N----NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcccc---c----CCcccCCcccch-hhhhhccccccccc
Confidence 3567888777666543111001111 4567788888877766433 2 335588899997 99999999999999
Q ss_pred eEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCc
Q 011147 243 PIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSV 320 (492)
Q Consensus 243 PV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~ 320 (492)
||-++. ...++|+|..+|+ +.+.+. ...+.++ ++ +.. +..|....
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi-----~f~~~~---------~~~~~~v-------------mt-~~~-~~~~~gi~---- 189 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDI-----QFLEDN---------SLLVSDV-------------MT-KNP-VTGAQGIT---- 189 (503)
T ss_pred ccccCCcccceeEEEEehhhh-----hhhhcc---------cchhhhh-------------cc-ccc-cccccccc----
Confidence 999632 2569999997763 333211 1223332 11 111 21243322
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHH
Q 011147 321 ISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEE 378 (492)
Q Consensus 321 ~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEe 378 (492)
+.++-+.+++.+-. ++|| |++|+++-||+..|+++.
T Consensus 190 ----------------l~~~neiL~~~kkGkl~iv------~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 190 ----------------LKEANEILKKIKKGKLPVV------DDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ----------------HHHHHHHHHhhhcCCccee------ccCCceeeeeehhhhhhh
Confidence 34445566666666 8888 799999999999999764
No 129
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=95.76 E-value=0.023 Score=39.31 Aligned_cols=42 Identities=14% Similarity=0.426 Sum_probs=35.1
Q ss_pred eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
+.+++.++++. ++++.+.+.+++++||++++ ++++|++..++
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~ 43 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRD 43 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHH
Confidence 35678889997 99999999999999999754 68999998444
No 130
>COG0517 FOG: CBS domain [General function prediction only]
Probab=95.76 E-value=0.024 Score=47.85 Aligned_cols=52 Identities=19% Similarity=0.406 Sum_probs=44.3
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHH-cCCccceEEeCCCCceEEEEEccc
Q 011147 206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIIS-NGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~-~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.++++|+. ++.++..+.++. ++.+.+.+ +++.++||.+++..+++|+++.+|
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~d 115 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSD 115 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHH
Confidence 79999985 778899999998 99999999 799999999863238999998544
No 131
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.11 Score=55.48 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=75.4
Q ss_pred cccccccccCcc-eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147 205 KTAKDAMTAMSK-IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA 283 (492)
Q Consensus 205 ~~V~diMtPr~~-v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~ 283 (492)
.++.++|.+... ......+.... ++++.+...+.+.+.|.++ .++++|++..+++ .+..... .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~----~~~~~~~----------~ 337 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIER-GNKFVGAVSIDSL----KTALTQQ----------Q 337 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHH----HhhhhcC----------C
Confidence 567788853221 12233555666 8899999999999999975 4789999984332 2211110 0
Q ss_pred CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCCCCC
Q 011147 284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVD 363 (492)
Q Consensus 284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~pde~ 363 (492)
.+.+. +...... ++.. +++.+++..+.+....++|+ |++
T Consensus 338 ~~~~~-------------~~~~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~v~------~~~ 376 (400)
T PRK10070 338 GLDAA-------------LIDAPLA--VDAQ--------------------TPLSELLSHVGQAPCAVPVV------DED 376 (400)
T ss_pred chhhh-------------hccCCce--eCCC--------------------CCHHHHHHHHHhCCCcEEEE------CCC
Confidence 11111 0000000 1222 23667788888755448888 789
Q ss_pred CcEEEEechhHHHHHHcc
Q 011147 364 EEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 364 g~vvGIITlEDViEeLlg 381 (492)
|.++|+||..+++..|-+
T Consensus 377 ~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 377 QQYVGIISKGMLLRALDR 394 (400)
T ss_pred CcEEEEEEHHHHHHHHHh
Confidence 999999999999999976
No 132
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=95.72 E-value=0.018 Score=48.07 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=42.6
Q ss_pred ccccccccccCcceEEEeC-CCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDI-NSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~-~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.++.++|... ...+.. ++++. ++++.+.+.++.++||+++ .++++|+|+.+|+
T Consensus 53 ~~~v~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di 107 (110)
T cd04601 53 DKPVSEVMTPE--NLLTTVEGTSLE-EALELLHEHKIEKLPVVDD-EGKLKGLITVKDI 107 (110)
T ss_pred CCCHHHhcccC--ceEEecCCCCHH-HHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhh
Confidence 45788999643 344556 88997 9999999999999999975 3689999985543
No 133
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.66 E-value=0.017 Score=48.66 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=44.8
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.+.++.++|.+ ++.+++.++++. ++++.+.+.+..++||+++ .++++|+++.++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~d 109 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDD-KGKVGGIVTEDD 109 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEEHHH
Confidence 44578889974 678899999998 9999999999999999974 368999998544
No 134
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.65 E-value=0.019 Score=48.28 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=44.8
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
....+.++|.+ +..+++.++++. ++++.+.+.+..++||.+++ ++++|+++..|+
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di 110 (113)
T cd04622 56 DTTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDL 110 (113)
T ss_pred ccCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHh
Confidence 33458899975 567799999998 99999999999999999743 789999985543
No 135
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.64 E-value=0.018 Score=47.73 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=44.6
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
+..+.++|.+ +..+++.++++. ++++.+.+++..++||.++ +.++|+++.++
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~ 101 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGT 101 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHH
Confidence 4568899975 677899999998 9999999999999999975 78999998554
No 136
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.58 E-value=0.013 Score=51.48 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=46.8
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
....+++++|.+ +..+++.++++. ++++.+.+.+.+++||++ .+.++|+++.+|+
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di 132 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR--GGRLVGIVSRADL 132 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec--CCEEEEEEEhHhh
Confidence 456789999965 678899999998 999999999999999997 3789999996554
No 137
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.58 E-value=0.018 Score=48.33 Aligned_cols=52 Identities=13% Similarity=0.386 Sum_probs=44.4
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
+.++.++|. .++.++..++++. ++++.+.+++..++||+++ +.++|+|+..|
T Consensus 56 ~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~d 107 (111)
T cd04626 56 EKKVFNIVS--QDVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKD 107 (111)
T ss_pred cCcHHHHhc--CCcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHH
Confidence 457888896 4677899999997 9999999999999999975 78999998544
No 138
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.55 E-value=0.019 Score=48.19 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=45.2
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.+..++++|.+ +..+++.++++. ++++.+.+++...+||+++ .++++|++...|
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~d 104 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDD-NKKLLGIISRQD 104 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHH
Confidence 35679999975 567899999998 9999999999999999974 368999998444
No 139
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=95.54 E-value=0.02 Score=48.17 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=44.9
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.+.+++++|.+ ++..++.++++. ++++.+.+++..++||.++ ++++|+|...+
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~d 107 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTD 107 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHH
Confidence 35578899975 678899999997 9999999999999999974 78999998544
No 140
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=95.53 E-value=0.024 Score=58.04 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=46.8
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
+.+|+|+|++ +..+++.++++. ++++.+.+++..++||++++ ++++|+|..+|++
T Consensus 262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~ 316 (321)
T PRK11543 262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFY 316 (321)
T ss_pred CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHH
Confidence 4568999986 677899999998 99999999999999999753 5899999966644
No 141
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.53 E-value=0.019 Score=48.37 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=45.0
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+..+.++|.+ +..+++.++++. ++++.+.+++..++||.++ +.++|+++.+|+
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di 111 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDV 111 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHH
Confidence 4578899975 567899999998 9999999999999999985 789999985543
No 142
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=95.49 E-value=0.025 Score=62.93 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=48.6
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCC-CceEEEEEccchHHHH
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTP-TNIIGAILGHSHMAVV 265 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~-d~IvGiv~~~d~m~~v 265 (492)
+.+++|+|++ ++.+++.++++. ++++.+.+++.+++||+|++. ++++|+|+.+|+++.+
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999975 567899999998 999999999999999998653 4699999977655443
No 143
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.46 E-value=0.026 Score=48.59 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=40.4
Q ss_pred ccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEcc
Q 011147 208 KDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGH 259 (492)
Q Consensus 208 ~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~ 259 (492)
.++|. .++.+++.++++. ++++.+.+++.+++||++++ ++++|+|+.+
T Consensus 71 ~~~~~--~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~ 118 (123)
T cd04627 71 LTIGT--SDVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVT 118 (123)
T ss_pred cccCc--CCceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHH
Confidence 45675 4678899999997 99999999999999999754 6899999844
No 144
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=95.45 E-value=0.022 Score=48.33 Aligned_cols=54 Identities=9% Similarity=0.201 Sum_probs=42.6
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
..++++|.+....+..+.++++. ++++.+.+++..++||++++ +.++|+|..++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~d 110 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSD 110 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHH
Confidence 45889997655444444489997 99999999999999999743 68999998554
No 145
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.42 E-value=0.024 Score=48.37 Aligned_cols=56 Identities=11% Similarity=0.285 Sum_probs=46.2
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
....++.++|. .++.+++.++++. ++++.+.+.+..++||++++ ++++|+++.+|+
T Consensus 64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl 119 (122)
T cd04803 64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDF 119 (122)
T ss_pred ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHh
Confidence 45667888885 4677899999998 99999999999999999753 689999985543
No 146
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.40 E-value=0.021 Score=48.97 Aligned_cols=56 Identities=9% Similarity=0.289 Sum_probs=46.2
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
..+..++++|.+ .+.+++.++++. ++++.+.+.+..++||.+++ ++++|+|+..|+
T Consensus 67 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di 122 (125)
T cd04631 67 AINEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDL 122 (125)
T ss_pred hhhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHh
Confidence 345678899864 678899999997 99999999999999999753 689999995543
No 147
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.34 E-value=0.026 Score=47.45 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=45.7
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
+.+++++|.+ +...++.++++. ++++.+.+.+...+||++++ ++++|+|...|++
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll 106 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVI 106 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhh
Confidence 4578999975 578899999997 99999999999999999753 7899999965543
No 148
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.31 E-value=0.027 Score=47.18 Aligned_cols=54 Identities=17% Similarity=0.352 Sum_probs=45.2
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
.+..++++|.+ ...+++.++++. ++++.+.+.+.+++||.+ .++++|+|+.+|+
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di 107 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE--DGRLVGIVTRTDL 107 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHh
Confidence 45678899975 577899999997 999999999999999997 3689999995543
No 149
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.30 E-value=0.023 Score=62.17 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=50.6
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
.+.+|+|+|+|+.++++++.+.++. ++++++.+++..++||++++ ++++|+|+.+|++
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl 214 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLK 214 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhh
Confidence 3568999999888899999999998 99999999999999999753 6899999966643
No 150
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=95.28 E-value=0.026 Score=47.17 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=42.8
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.++.++|.+ +..+++.++++. ++++.+.+++.+++||.++ ++++|+++..|
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~d 100 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDS 100 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHH
Confidence 357888875 467899999997 9999999999999999973 78999998444
No 151
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.27 E-value=0.032 Score=47.78 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=41.0
Q ss_pred ccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 208 KDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 208 ~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+++|. .++.++..++++. ++++.+.+++.+++||++++ ++++|+|+.+|+
T Consensus 68 ~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di 117 (120)
T cd04641 68 RSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDI 117 (120)
T ss_pred cccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHh
Confidence 34454 3667899999998 99999999999999999754 789999996553
No 152
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.26 E-value=0.024 Score=48.42 Aligned_cols=55 Identities=15% Similarity=0.382 Sum_probs=45.6
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
...++.++|.. ++.+++.++++. ++++.+.+.+.+++||++++ +.++|++..+|+
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl 119 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDV 119 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHh
Confidence 45678889963 568899999997 99999999999999999753 789999985554
No 153
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.22 E-value=0.027 Score=48.79 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=46.1
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeC-CCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVG-TPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~-~~d~IvGiv~~~d~ 261 (492)
.+..++++|++ ++.+++.++++. ++++.+.+.++..+||.++ +.+.++|+|..+|+
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di 125 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDV 125 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhh
Confidence 45678999974 678899999997 9999999999999999853 44689999996654
No 154
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=95.17 E-value=0.028 Score=60.77 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=50.8
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK 267 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk 267 (492)
.+.+++++|+| ++++++.++++. ++++.+.++++..+||+++ .++++|+|+.+|++..+.+
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHh
Confidence 55689999986 677899999997 9999999999999999974 4689999997776655543
No 155
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=95.13 E-value=0.035 Score=46.35 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=45.1
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
.+..+.++|.+ ++.+++.++++. ++++.+.+.+...+||+++ .++++|+++.+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di 108 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDD-DGELLGLLSQTDL 108 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHh
Confidence 35668889864 678899999998 9999999999889999975 3689999985543
No 156
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=95.12 E-value=0.03 Score=46.90 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=44.3
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
+.++.++|.. ++.+++.++++. ++++.+.+++.+++||.++ +.++|+++..|
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~d 107 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATD 107 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHH
Confidence 3568888864 678899999998 9999999999999999975 78999998544
No 157
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=95.08 E-value=0.035 Score=46.13 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=43.4
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
..+.++|.+ ++.+++.++++. ++++.+.+.+.+++||++++ ++++|+++.+|
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~ 105 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSS 105 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHH
Confidence 457888975 567899999997 99999999999999999743 68999998554
No 158
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.92 E-value=0.035 Score=46.22 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=37.4
Q ss_pred eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.+++.++++. ++++.+.+++..++||.+++ ++++|+|..+|+
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di 93 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDL 93 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHh
Confidence 67899999998 99999999999999999753 689999996554
No 159
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.86 E-value=0.039 Score=46.19 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=43.7
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
..+.++|. .++.+++.++++. ++++.+.+++..++||++++ +.++|+++.+|
T Consensus 56 ~~v~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~d 107 (111)
T cd04639 56 APVRGVMR--RDFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLEN 107 (111)
T ss_pred CcHHHHhc--CCCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHH
Confidence 46888896 3678899999998 99999999999999999753 68999998544
No 160
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=94.80 E-value=0.06 Score=44.87 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=43.9
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
..+.++|.+ ++.+++.++++. ++++.+.+.+...+||.++ .++++|++..+|+
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di 108 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDD-SGRLVGIVSRSDL 108 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHh
Confidence 457788875 678899999998 9999999999999999975 4689999985553
No 161
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.69 E-value=0.39 Score=50.61 Aligned_cols=106 Identities=13% Similarity=0.228 Sum_probs=68.1
Q ss_pred EEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhh
Q 011147 219 SLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQR 298 (492)
Q Consensus 219 ~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 298 (492)
....+.+.. ++++.+...+.....|+++ .++..|++...+ +.+..... ..+.+.
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~----~~~~~~~~----------~~~~~~---------- 307 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDR-QNKLVGVVDVES----IKQARKKA----------QGLQDV---------- 307 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcC-CCCEEEEEeHHH----HHHHhhcC----------Cchhhh----------
Confidence 344566676 8888888888888888874 468999998332 22221110 011111
Q ss_pred hccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCCCCCCcEEEEechhHHHHH
Q 011147 299 QGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEE 378 (492)
Q Consensus 299 ~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~pde~g~vvGIITlEDViEe 378 (492)
+...... ++.+ .++.+++..|.+....++|+ |++|.++|+||.+++++.
T Consensus 308 ---~~~~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~v~------~~~~~~~g~i~~~~~~~~ 356 (363)
T TIGR01186 308 ---LIDDIYT--VDAG--------------------TLLRETVRKVLKAGIKVPVV------DEDQRLVGIVTRGSLVDA 356 (363)
T ss_pred ---hccCCce--ECCC--------------------CcHHHHHHHHHhCCCCEEEE------CCCCcEEEEEEHHHHHHH
Confidence 0000000 1222 23667788888876668888 789999999999999999
Q ss_pred Hcc
Q 011147 379 LLQ 381 (492)
Q Consensus 379 Llg 381 (492)
|.+
T Consensus 357 ~~~ 359 (363)
T TIGR01186 357 LYD 359 (363)
T ss_pred HHh
Confidence 976
No 162
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=94.69 E-value=0.068 Score=36.85 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=30.4
Q ss_pred HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147 337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEEL 379 (492)
Q Consensus 337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeL 379 (492)
+.++++.|++.+.+ ++|+ +++++++|++|.+|+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~v~------~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 11 LEEALELLREHGIRRLPVV------DEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred HHHHHHHHHHhCCCcccEE------CCCCeEEEEEEHHHHHHhh
Confidence 44568899888877 8888 6678999999999998754
No 163
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=94.69 E-value=0.038 Score=61.08 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=49.9
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV 264 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~ 264 (492)
...+|+++|+ +.++.+++.+++++ ++.+.+.++++.++||.+++ ++++|+++.+|+++.
T Consensus 244 ~~~~V~~iM~-~~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~ 302 (546)
T PRK14869 244 QSIPVSYIMT-TEDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSP 302 (546)
T ss_pred cCCCHHHhcc-CCCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhcc
Confidence 3578999998 24788899999998 99999999999999999753 789999997776553
No 164
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.67 E-value=0.039 Score=46.51 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=42.2
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
.+.+++++|.+ ...+++.++++. ++++.+.+.+ .+||+++ .++++|+++.+|+
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~di 113 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDD-DGIFIGIITRREI 113 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHh
Confidence 46789999986 467789999998 9999997754 5999974 3689999985543
No 165
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=94.62 E-value=0.042 Score=59.98 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCCCChhHHHHHhhccc---ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 185 GGELTHDETTIITGALD---MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 185 ~g~L~~~E~~iI~~vl~---l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
.|.++ ++++..+++. =...+|+++|| .++.+++..+-+ .|++-.|.+.+..|+||.++ ++++|+|+..|+
T Consensus 193 ~GIvT--~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~-feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dI 265 (610)
T COG2905 193 LGIVT--RKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFL-FEAMLMMLRNRIKHLPVTED--GQPLGILTLTDI 265 (610)
T ss_pred cceee--hHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchH-HHHHHHHHHhCCceeeeecC--CeeeEEeeHHHH
Confidence 45554 5566666655 34568999999 699999999998 59999999999999999976 799999984443
No 166
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.61 E-value=0.043 Score=49.00 Aligned_cols=54 Identities=15% Similarity=0.373 Sum_probs=45.6
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
....+.++|.+ +..+++.++++. ++++.+.+.+++++||++. ++++|++..+|+
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl 140 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDI 140 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHh
Confidence 45678899975 567899999998 9999999999999999975 789999985543
No 167
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.60 E-value=0.046 Score=46.70 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=44.4
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+..++++|.. +..+++.++++. ++++.+.+++..++||++++ ++++|++..+|+
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dl 119 (122)
T cd04637 66 NRRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDL 119 (122)
T ss_pred HhHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHh
Confidence 3468888863 678899999998 99999999999999999643 689999985543
No 168
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=94.45 E-value=0.052 Score=54.03 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=49.3
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
-+.+|+|+|.+ ++++++.|..+- |++++|..++..|+-|.+ +.+..+|++++-|++
T Consensus 232 ~~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL 287 (294)
T COG2524 232 LDAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDIL 287 (294)
T ss_pred ccccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHH
Confidence 45789999985 889999999997 999999999999999997 358999999977654
No 169
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=94.39 E-value=0.052 Score=45.44 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=40.9
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.+.++|. ++.+++.++++. ++++.+.+++.+++||+++ .++++|+++.+|
T Consensus 58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~d 107 (111)
T cd04590 58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDE-YGGTAGLVTLED 107 (111)
T ss_pred CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHH
Confidence 4666664 457789999997 9999999999999999975 367999998554
No 170
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=94.20 E-value=0.077 Score=44.31 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=43.6
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
..+.++|.+ +...++.++++. ++++.+.+.+...+||.+++ +.++|++..+|+
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl 107 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDI 107 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHh
Confidence 457788863 677899999998 99999999999999999753 689999986554
No 171
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=94.19 E-value=0.29 Score=51.93 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=80.6
Q ss_pred cccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCccccc
Q 011147 211 MTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDIN 290 (492)
Q Consensus 211 MtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~ 290 (492)
++++...+++.+...+- +....+.++++.|+||.+.+..+++.++..+-+ ++.+.... ...+....+.
T Consensus 158 ~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rI----l~~l~~~~-------~~~~~~~~l~ 225 (381)
T KOG1764|consen 158 ETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRI----LKFLWLNG-------RLLPLPSLLS 225 (381)
T ss_pred cccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHH----HHHHHHhh-------cccccHHHhh
Confidence 34444547788888876 788899999999999998656799999984433 44432211 0111111100
Q ss_pred ccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEE
Q 011147 291 INSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGI 369 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGI 369 (492)
....++. .-.| -.-... +...++.+|+++|..++.. ++|| |++|+.+|+
T Consensus 226 ------~s~~dl~--ig~~--~~i~~i--------------~~~~~v~~al~~m~~~~is~lpvV------~~~g~~v~~ 275 (381)
T KOG1764|consen 226 ------KSLSDLG--IGTW--SNIASI--------------SEDTPVIEALKIMSERRISALPVV------DENGKKVGN 275 (381)
T ss_pred ------CCHHHhC--cchh--hhheee--------------cCCCcHHHHHHHHHhcCcCcceEE------cCCCceecc
Confidence 0000000 0000 000000 1123466789999999999 9999 789999999
Q ss_pred echhHHHHHHcc
Q 011147 370 ITLEDVMEELLQ 381 (492)
Q Consensus 370 ITlEDViEeLlg 381 (492)
+++-|++-.+..
T Consensus 276 ~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 276 YSRFDVIHLARE 287 (381)
T ss_pred eehhhhhhhhhc
Confidence 999999998876
No 172
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=94.18 E-value=0.061 Score=53.41 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=43.7
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEE
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAIL 257 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~ 257 (492)
.+.+++|+|.+ ++.+++.++++. ++++.+.+++..++||++++ ++++|+|+
T Consensus 218 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTL--GPKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCC--CCeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 35679999975 567899999998 99999999999999999743 58999985
No 173
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.14 E-value=0.066 Score=58.38 Aligned_cols=55 Identities=11% Similarity=0.274 Sum_probs=47.3
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA 263 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~ 263 (492)
..++|+|++ ++.+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|+++
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~ 202 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALR 202 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHH
Confidence 569999985 788999999998 99999999999999999753 68999999666543
No 174
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.02 E-value=0.09 Score=45.48 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=37.7
Q ss_pred cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.++.+++.++++. ++++.+.+++.+++||++++ ++++|+|+..|
T Consensus 79 ~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~d 122 (126)
T cd04642 79 RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTD 122 (126)
T ss_pred CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHH
Confidence 4678899999998 99999999999999999754 78999998443
No 175
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=94.00 E-value=0.11 Score=46.47 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
+.++++.|.+.+.+ ++|+ |++|+++|+||.+|++..+..
T Consensus 12 l~ea~~~m~~~~~~~~~Vv------D~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 12 LKEALNLMLDEKQSCVLVV------DSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred HHHHHHHHHHcCCCEEEEE------CCCCeEEEEEEHHHHHHHHhh
Confidence 56788999888877 9999 788999999999999998864
No 176
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.96 E-value=0.084 Score=44.22 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=43.4
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
+..+.++|.+ ++.++..++++. ++++.+.+++...+||++++ +.++|+++.+|
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~d 108 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRD 108 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHH
Confidence 3468888864 577899999997 89999999899999999754 67999998544
No 177
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=93.95 E-value=0.1 Score=44.02 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=39.9
Q ss_pred ccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 210 AMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 210 iMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+|.+ +..+++.++++. ++++.+.+++...+||.++ ++++|+|..+|+
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl 102 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDL 102 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhh
Confidence 7864 667899999998 9999999999999999953 689999996554
No 178
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=93.95 E-value=9.9 Score=40.71 Aligned_cols=60 Identities=8% Similarity=0.005 Sum_probs=48.2
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC 268 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~ 268 (492)
+..++++|. ++.+++.+.++. ++++.+.+++....+|+|+ .+.++|+|+..|++..++..
T Consensus 254 ~~~l~~~~~---~~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 254 NFDWQSLLR---EPYFVPENKKLD-DLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred CCCHHHHcC---CCeEeCCCCcHH-HHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhCC
Confidence 345778886 467899999998 9999999999889999974 57899999977666665544
No 179
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.94 E-value=0.076 Score=57.88 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=46.8
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
..++++|++ ++.+++.++++. ++++.+.+++...+||+++ .++++|+|..+|++
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl 199 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGAL 199 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHH
Confidence 579999985 778999999998 9999999999999999974 36899999966653
No 180
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.81 E-value=0.11 Score=43.33 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=42.1
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
.++++|.+ ++.+++.++++. ++++.+.+.+..++||++++ +.++|++...|
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~d 106 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSED 106 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHH
Confidence 47788864 567899999998 99999999998999999753 78999998444
No 181
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.23 E-value=0.13 Score=43.62 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=42.2
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCC---ccceEEeCCCCceEEEEEccc
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH---SRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~---SRiPV~~~~~d~IvGiv~~~d 260 (492)
.+.++.++|.+ +...++.++++. ++++.+.+++. ..+||++++ +.++|+|...|
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~d 115 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKD 115 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHH
Confidence 45679999975 677899999998 99999988875 345777643 78999998544
No 182
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.87 E-value=0.14 Score=55.53 Aligned_cols=58 Identities=12% Similarity=0.265 Sum_probs=49.1
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA 263 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~ 263 (492)
.+.+++++|++ .++.+++.++++. ++++.+.+++...+||+++ .++++|+|+.+|+++
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~ 198 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVK 198 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhh
Confidence 35679999985 4788999999998 9999999999999999975 478999999666543
No 183
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.47 E-value=0.19 Score=41.73 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=41.8
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS 260 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d 260 (492)
..+.++|.. +..+++.++++. ++++.+.+.+..++||.++ ++++|+++.+|
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d 102 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVAD 102 (106)
T ss_pred chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHH
Confidence 356777864 567789999997 9999999999999999974 58999998554
No 184
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=92.30 E-value=0.2 Score=43.11 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=29.9
Q ss_pred HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHH
Q 011147 337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVME 377 (492)
Q Consensus 337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViE 377 (492)
+.++++.|.+.+.. ++|+ |++|+++|+||..|+.+
T Consensus 77 l~~a~~~~~~~~~~~lpVv------d~~~~l~Givt~~dl~~ 112 (113)
T cd04597 77 LREALNLMHEHNIRTLPVV------DDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHHHHHHHHcCCCEEEEE------CCCCeEEEEEEHHHhhc
Confidence 56678999888877 8899 78899999999999864
No 185
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=91.70 E-value=0.4 Score=41.69 Aligned_cols=39 Identities=10% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
+.++++.|++.+.. ++|+ |++|+++|+||.+|++..+..
T Consensus 13 v~~a~~~m~~~~~~~~~Vv------d~~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 13 CAEAIEILKEKGFDQLPVV------DESGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred HHHHHHHHHHcCCCEEEEE------cCCCCEEEEEEHHHHHHHHHH
Confidence 55678899888777 8888 778999999999999987764
No 186
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=91.68 E-value=0.25 Score=40.30 Aligned_cols=51 Identities=18% Similarity=0.415 Sum_probs=42.0
Q ss_pred cccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147 207 AKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261 (492)
Q Consensus 207 V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~ 261 (492)
+.++|.. +..++..++++. ++++.+.+.+.+.+||.+++ +.++|++..+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl 110 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDI 110 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHh
Confidence 5677764 677888999997 99999999999999999764 789999985543
No 187
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=91.22 E-value=0.3 Score=53.45 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=47.0
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
+.+++++|++ .++++++.++++. ++++.+.+++++.+||+++ .++++|+|+.+|++
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl 201 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDD-NGRLKGLITVKDIE 201 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhh
Confidence 4579999983 4678899999998 9999999999999999975 37899999855543
No 188
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=90.08 E-value=0.36 Score=49.31 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=48.5
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhc
Q 011147 206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKN 270 (492)
Q Consensus 206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~ 270 (492)
.++++|.| +++++.+.++. ++++.+.+.+....||+++ .+.++|+|+..|++..++..+.
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivGei~ 193 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVGEIE 193 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhCCCc
Confidence 36788864 45799999998 9999999999999999975 4679999997777666665443
No 189
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=88.67 E-value=0.77 Score=37.87 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=32.0
Q ss_pred HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
+.++++.|.+.+.+ ++|+ |+ |+.+|+||..|+...+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~V~------~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 12 VSQAIERMREYGVSQLPVV------DD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred HHHHHHHHHHcCCceeeEe------eC-CeeEEEEeHHHHHHHHhc
Confidence 56678899888877 8888 56 999999999999997764
No 190
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=87.62 E-value=0.98 Score=42.18 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=42.4
Q ss_pred ccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147 200 LDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV 265 (492)
Q Consensus 200 l~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v 265 (492)
=++.+.+|+++|---. -.++.|.+++ . +..+++ +|..+-|.++ ++++||++.+|+|+.+
T Consensus 125 e~i~~~~vr~vM~e~f--P~Vs~~~~l~-v-I~~LL~-~~~AVlV~e~--G~~vGIITk~DI~k~~ 183 (187)
T COG3620 125 ESIRSLRVREVMGEPF--PTVSPDESLN-V-ISQLLE-EHPAVLVVEN--GKVVGIITKADIMKLL 183 (187)
T ss_pred cchhhhhHHHHhcCCC--CcCCCCCCHH-H-HHHHHh-hCCeEEEEeC--CceEEEEeHHHHHHHH
Confidence 3478899999997433 3588999997 4 444444 4567888854 8999999988776543
No 191
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=86.43 E-value=0.79 Score=48.56 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=53.5
Q ss_pred CCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147 187 ELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA 263 (492)
Q Consensus 187 ~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~ 263 (492)
.++..+.+.+ +=..+.+.|+||++. ++...+.+++ ++-+.+.++.--++||+++ .|+.|-+|.+.|+++
T Consensus 157 ~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 157 IITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMK 225 (503)
T ss_pred EEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceecc-CCceeeeeehhhhhh
Confidence 3444444444 456778999999977 7788899997 8888888888889999974 589999999776543
No 192
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=84.85 E-value=1.2 Score=48.36 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=49.1
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA 263 (492)
Q Consensus 202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~ 263 (492)
-.+..++|+|.++ ++++..+++.+ ++.+.+.++...-.||+++ .++.+|+++..|++.
T Consensus 193 ~~~~~i~~im~~~--~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiid 250 (451)
T COG2239 193 EPDELLKDLMEDD--VVSVLADDDQE-EVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIID 250 (451)
T ss_pred CcHhHHHHHhccc--ceeecccCCHH-HHHHHHHHhCCeecceECC-CCceeeeeeHHHHHH
Confidence 4667799999874 78999999997 9999999999999999975 478999999665543
No 193
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=83.32 E-value=2 Score=45.35 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=43.6
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM 262 (492)
Q Consensus 205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m 262 (492)
..+.+.|.+ ++.+++.++++. +++..+.++++. +||.++ .+.++|+|...+++
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~ 354 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLV 354 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHH
Confidence 458888864 567799999998 999999999999 999975 47899999855443
No 194
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=80.77 E-value=2.9 Score=44.98 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=33.2
Q ss_pred HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
+.++++.|.+.+.. ++|+ |++|+++|+||.+|+++.+..
T Consensus 354 l~ea~~~m~~~~~~~~~Vv------d~~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 354 VGDAIEILREYGFDQLPVV------TEAGKVLGSVTLRELLSALFA 393 (454)
T ss_pred HHHHHHHHHHcCCCEEEEE------cCCCeEEEEEEHHHHHHHHhc
Confidence 66778999887777 8888 678999999999999987765
No 195
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.48 E-value=6.4 Score=40.98 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=73.2
Q ss_pred hHHHHHhhcccccccccccccccCcceEEEeCCC-ChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147 191 DETTIITGALDMTQKTAKDAMTAMSKIFSLDINS-RLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK 269 (492)
Q Consensus 191 ~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~-tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l 269 (492)
.-++.++++=...=.++++||.+ .+.-....+. .-+ ...+.+...+-+-+-+++ ...+.+|++...+. ++..
T Consensus 260 YV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~----~~~~ 332 (386)
T COG4175 260 YVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVD-RGNKFVGVVSIDSL----VKAA 332 (386)
T ss_pred HHHHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHh-ccCceeeEEeccch----hccc
Confidence 34677888888888899999985 2222111111 222 456666666655555555 34568999974432 1110
Q ss_pred ccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCc
Q 011147 270 NDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDV 349 (492)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~ 349 (492)
. ...+ ..++.++. +.+.+....+...
T Consensus 333 ~-----------~~~~-----------------------~~v~~d~~--------------------~~~~~~~~~~~~~ 358 (386)
T COG4175 333 L-----------IDDV-----------------------LTVDADTP--------------------LSEILARIRQAPC 358 (386)
T ss_pred c-----------cccc-----------------------cccCccch--------------------HHHHHHHHhcCCC
Confidence 0 0000 00122221 2233566666665
Q ss_pred ceEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 350 KISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 350 ~~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
.+.|+ ||+|..+|+|+...+++.|.+
T Consensus 359 p~aVv------de~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 359 PVAVV------DEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ceeEE------cCCCcEEEEecHHHHHHHHhc
Confidence 67888 899999999999999999976
No 196
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=77.59 E-value=3.3 Score=43.35 Aligned_cols=93 Identities=14% Similarity=0.273 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhccccCCCCCCCh-hHHHHHhhcccc-------cccccccccccCcceEEEeCCCChHHHHHHHHHHcCC
Q 011147 168 RAELKTLVDMHGNEAGKGGELTH-DETTIITGALDM-------TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH 239 (492)
Q Consensus 168 ~eEL~~lv~~~~~e~~~~g~L~~-~E~~iI~~vl~l-------~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~ 239 (492)
-+++.++++..+ .+.+.- ++..-+.|+... .+.++..+||. ..+++....++. .+...+.-.|+
T Consensus 209 v~d~~~l~~kt~-----~sRfPVvn~~~kvvGvVt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~i 280 (432)
T COG4109 209 VEDWLDLVEKTG-----HSRFPVVNRSMKVVGVVTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGI 280 (432)
T ss_pred HHHHHHHHHHcC-----CCccceecccceEEEEEEehhhhcCCCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccc
Confidence 467777776322 122222 344445566555 45677889984 467899999998 88888889999
Q ss_pred ccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147 240 SRVPIYVGTPTNIIGAILGHSHMAVVVKCK 269 (492)
Q Consensus 240 SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l 269 (492)
.-+||.++ ..+.+|+|.+.|.|+.+-...
T Consensus 281 em~PVv~~-n~~llGiitR~dvlk~lq~~q 309 (432)
T COG4109 281 EMLPVVDS-NNTLLGIITRQDVLKSLQMIQ 309 (432)
T ss_pred eeeeEEcC-CceEEEEEEHHHHHHHHHHhc
Confidence 99999985 468999999998877665443
No 197
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=73.57 E-value=5.6 Score=42.56 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=43.9
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV 265 (492)
Q Consensus 204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v 265 (492)
+..+.++|.+ +..+++.++++. +++..+.++.+. +||+++ .++++|+|...++++.+
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~ 392 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRAL 392 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHH
Confidence 4467788864 467799999998 999999987766 999974 48999999855544333
No 198
>PRK11573 hypothetical protein; Provisional
Probab=58.20 E-value=20 Score=38.52 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=40.6
Q ss_pred ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhc
Q 011147 216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKN 270 (492)
Q Consensus 216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~ 270 (492)
++.+++.+.+++ ++++.+.+++..-.-|+| +.+.++|+|+..|++..++-+..
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivGei~ 315 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVGDFT 315 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhCCCC
Confidence 578899999998 999999887755555665 46899999997766666665543
No 199
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=55.95 E-value=24 Score=39.44 Aligned_cols=53 Identities=25% Similarity=0.279 Sum_probs=34.9
Q ss_pred cCCcCccchhhhhhhhhccccccCCCCCCcccccc-cccCCCCCCCCCCCCCcccCCCCCCCc
Q 011147 384 ILDETDDYVDVHRKIKINMLESQKSPSPGAAFVSR-LRRTPMDSPIPSHHDQTPVSSYNHSPI 445 (492)
Q Consensus 384 I~DEtD~~~d~~~~irv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (492)
.+||-|+.+. -..+.. .+|+||=-+. -.|---+||||..+++-|.+..|++++
T Consensus 628 mvdead~~va--------gp~~~~-~~pg~p~m~gmpkrkr~~~pl~r~~e~~~~~~d~~~~~ 681 (888)
T KOG3768|consen 628 MVDEADLSVA--------GPSSPG-SSPGGPGMPGMPKRKRKAGPLPRSFEFRRSSTDRSSSS 681 (888)
T ss_pred eeeccccccc--------CCCCCC-CCCCCCCCCCCcccccccCCCccchhcCcccccccCCC
Confidence 4577776643 111222 3677764444 445566899999999999999877663
No 200
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=55.60 E-value=18 Score=39.86 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=41.4
Q ss_pred CCCcEEEEechhHHHHHHccCccCCcCccchhhhhhhhhccccccCCCC
Q 011147 362 VDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPS 410 (492)
Q Consensus 362 e~g~vvGIITlEDViEeLlgeeI~DEtD~~~d~~~~irv~~~~~~~~~~ 410 (492)
.+.-..|+.|+||+++++.+++|.|+.+.+...++.+|.+.+++....+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~ 445 (498)
T KOG2118|consen 397 LGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLASLMESL 445 (498)
T ss_pred ccccCccceehhhhhccccchhhhccccceechhhhhhhHhhhhhhccC
Confidence 3455778899999999999999999999999999999988776665433
No 201
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=52.86 E-value=16 Score=38.92 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHH---hchhHHHHHHHHHH-------
Q 011147 12 MFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIV---KNQHLLLCTLLIGN------- 81 (492)
Q Consensus 12 ~~w~~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~---~~~~~lL~tllign------- 81 (492)
..|+-++++.+++++-+++=|.-.|++.+...+-+.++++.. ++-+..++. +|.+|+|..=|+..
T Consensus 40 ~pa~al~i~~~~I~WLaM~EGgQ~slVGL~pvd~~lYkeSHp-----~tyk~~~la~~GdNLdRYl~GRQfmVvlvvFvI 114 (512)
T PF03842_consen 40 HPAVALFIMWVGIVWLAMMEGGQGSLVGLPPVDRELYKESHP-----RTYKNTSLAHKGDNLDRYLMGRQFMVVLVVFVI 114 (512)
T ss_pred chHHHHHHHHHHHHHHHHhhccceeeecCCCCCHHHHhhcCc-----hHhhhchhhcccccHHHHhhcceeEEEEEEEEh
Confidence 457777788888888788888889999999999888887765 244444443 56788887755332
Q ss_pred HHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHhhhhHHHHHHHhhHHHHHHH-hHH-HHHHHHHH----HHHHH
Q 011147 82 AMAMEALPIFLDA-LLPAWASI------VISVTLILAFGEIIPQAVCSRYGLSVGAKL-SVL-VRLIVIVL----FPIAY 148 (492)
Q Consensus 82 ~l~~~~l~~~~~~-l~~~~~a~------li~t~lilifGEiiPK~ia~~~~e~ia~~~-a~~-v~~~~~ll----~Pi~~ 148 (492)
+++...+.--.+- .++.|+.. +..+++..+.|.+.+|.-|.+--..+.... +.+ ++..+.+= .=-+|
T Consensus 115 N~cgspl~~a~~vlGlP~~v~~IFL~~GlaMil~t~~lGQLttQVNAshcMlDyINnyFalFTlyvam~IEfsGvmHssY 194 (512)
T PF03842_consen 115 NLCGSPLDPAVDVLGLPDWVKFIFLDIGLAMILFTCVLGQLTTQVNASHCMLDYINNYFALFTLYVAMAIEFSGVMHSSY 194 (512)
T ss_pred hhcCCCCCCccccccCchHHHHHhhccchHHHHHHHhhccccHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2221111000000 02333321 223455678899999988876443332211 111 11111110 11256
Q ss_pred HHHHHhhhhhCCC
Q 011147 149 PISKLLDWLLGKR 161 (492)
Q Consensus 149 ~is~il~~llg~~ 161 (492)
++..++.++-|+.
T Consensus 195 LIq~i~~~~sGKP 207 (512)
T PF03842_consen 195 LIQNILSALSGKP 207 (512)
T ss_pred HHHHHHHHHcCCC
Confidence 6777777777764
No 202
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=49.22 E-value=16 Score=27.70 Aligned_cols=19 Identities=42% Similarity=0.880 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 011147 12 MFWVYLVICVGLVSFAGLMSG 32 (492)
Q Consensus 12 ~~w~~l~iil~LlllsgffSg 32 (492)
.+|+|+++ +.++|||+++.
T Consensus 2 PwWvY~vi--~gI~~S~ym~v 20 (52)
T PF14147_consen 2 PWWVYFVI--AGIIFSGYMAV 20 (52)
T ss_pred cchHHHHH--HHHHHHHHHHH
Confidence 58988764 45778888763
No 203
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=47.22 E-value=27 Score=35.47 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHH
Q 011147 340 CLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEE 378 (492)
Q Consensus 340 ~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEe 378 (492)
++..+-..+.. +.|+ |++|+++|+||.+|++.+
T Consensus 275 ~ls~~~~~~~~~~~Vv------d~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 275 ALSDFLARGRSVLPVV------DEDGRPLGTVTRADLLDE 308 (309)
T ss_pred HHHHHHhcCCceeEEE------CCCCcEeeEEEHHHHhhh
Confidence 45555555555 8999 899999999999998764
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=44.44 E-value=27 Score=37.17 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=36.9
Q ss_pred cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147 215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV 265 (492)
Q Consensus 215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v 265 (492)
.++.+++.++++. +++..+.++++. +||.++ ++++|+|...++++.+
T Consensus 333 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 333 AAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred ccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 4667889999998 999988887765 788763 8999999866654443
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=41.48 E-value=36 Score=36.24 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHHHHHhHcCcceEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147 337 LHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQ 381 (492)
Q Consensus 337 l~~~l~~~~~~~~~~lVv~~~~~pde~g~vvGIITlEDViEeLlg 381 (492)
+.+++....+...-+.|+ |+ |.++|+||..+++..|.+
T Consensus 344 ~~~~~~~~~~~~~~~~v~------~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 344 MRDVLAARHRTGGAILLV------EN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred HHHHHHHHhcCCCCeEEe------eC-CeEEEEEeHHHHHHHHhc
Confidence 556677665544338887 54 999999999999999875
No 206
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=41.00 E-value=2.8e+02 Score=25.28 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=4.0
Q ss_pred HHHHHHHhhh
Q 011147 147 AYPISKLLDW 156 (492)
Q Consensus 147 ~~~is~il~~ 156 (492)
.+|+..++++
T Consensus 133 ~~P~~~~l~~ 142 (183)
T PF01595_consen 133 LYPLVWLLSF 142 (183)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 207
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=34.93 E-value=1.2e+02 Score=30.82 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 011147 134 VLVRLIVIVLFPIAYPISKLLDWLL 158 (492)
Q Consensus 134 ~~v~~~~~ll~Pi~~~is~il~~ll 158 (492)
++.++++=+|+|++|+-+++.++-.
T Consensus 210 Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 210 YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999888888754
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=34.72 E-value=37 Score=39.11 Aligned_cols=64 Identities=6% Similarity=0.123 Sum_probs=47.9
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCC-ceEEEEEccchHHHHHHhh
Q 011147 203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPT-NIIGAILGHSHMAVVVKCK 269 (492)
Q Consensus 203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d-~IvGiv~~~d~m~~vvk~l 269 (492)
..+.|+++|+ ++|+++..+.++. |+.+.+......-+|+++.... -++|.|.++.+.+.+-+.+
T Consensus 586 h~v~VE~iMV--~dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 586 HTVKVEHIMV--TDVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eEEEeeeecc--ccceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence 4567999998 5999999999997 8877666655788999974322 2689998776655555543
No 209
>PF15284 PAGK: Phage-encoded virulence factor
Probab=32.14 E-value=57 Score=25.60 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 011147 17 LVICVGLVSFAGLMSGLTLGLMSL 40 (492)
Q Consensus 17 l~iil~LlllsgffSg~E~Al~Sl 40 (492)
+++.++|++.++.||++.+|--+-
T Consensus 7 ifL~l~~~LsA~~FSasamAa~~~ 30 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMAADSS 30 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhC
Confidence 456677888899999998775443
No 210
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=30.56 E-value=7e+02 Score=26.74 Aligned_cols=71 Identities=7% Similarity=-0.014 Sum_probs=45.2
Q ss_pred HHHHhhcccccc-cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147 193 TTIITGALDMTQ-KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC 268 (492)
Q Consensus 193 ~~iI~~vl~l~~-~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~ 268 (492)
++++....+-.. ...+..+. ++..++...++. ++++.+++.+-.-.-|.| +.+.+.|+|+..|++..++-.
T Consensus 259 Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~-~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 259 KDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLS-DLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred HHHHHHHhcCccccchhhccc---CCeEecCCCcHH-HHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhCC
Confidence 455555555443 22222222 677899999998 999999876643344445 568999999955555444433
No 211
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=28.35 E-value=76 Score=34.59 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHhhhhhCCCCcc
Q 011147 110 LAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPI--------AYPISKLLDWLLGKRHSA 164 (492)
Q Consensus 110 lifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi--------~~~is~il~~llg~~~~~ 164 (492)
.+.|-|..|-.|..+|..+... |+.+++.++..=+ +|++..+..++.|.+.+.
T Consensus 369 TIlasitwQ~aASafpiaFlNN--p~ty~lL~~aL~LE~TGlchgawvi~~i~k~vaG~q~de 429 (545)
T TIGR00811 369 TILASIAWQLVASAFPIAFLSN--PIVYIVLRIVLLIEATGICAGAWFLGMIHKKVAGFQLDE 429 (545)
T ss_pred HHHHHHHHHHHHHhCcHHHhcC--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcce
Confidence 3789999999999999887664 3333333332222 566777767777776543
No 212
>PHA00728 hypothetical protein
Probab=26.35 E-value=51 Score=29.38 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=43.2
Q ss_pred ChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeC
Q 011147 189 THDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVG 247 (492)
Q Consensus 189 ~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~ 247 (492)
++++-+-|.|-....++.+.+..-|+.-||+++-++ ++ -.+....+.|+|.|-|
T Consensus 35 ~~e~lqEiEnPYTVTNRaIsElV~PkDTMfYLsgnq-is----LILtAfEfarLP~YFg 88 (151)
T PHA00728 35 EDEELQEIENPYTVTNRAISELVEPKDTMFYLSGNQ-IS----LILTAFEFARLPAYFG 88 (151)
T ss_pred hhhhHHHhcCCceehhHHHHHhcCCccceEEecCCc-hh----hHHHHHHHhhchhhhC
Confidence 445667899999999999999999999999998764 33 2333568899999965
No 213
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.24 E-value=1.1e+03 Score=27.36 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=34.7
Q ss_pred HHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 011147 106 VTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLD 155 (492)
Q Consensus 106 t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~ 155 (492)
-.+-.-....+.-.+..--...+..+++|-+..+..+..|++..+.++..
T Consensus 260 ~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG 309 (716)
T KOG0058|consen 260 NSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYG 309 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHH
Confidence 33444444555555555556667788889999999999999887776644
No 214
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=24.96 E-value=1.1e+02 Score=21.64 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 011147 11 PMFWVYLVICVGLVSFAGLM 30 (492)
Q Consensus 11 ~~~w~~l~iil~Llllsgff 30 (492)
.-+|..++++++-++||.+|
T Consensus 16 SLY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 16 SLYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhh
Confidence 44566666666667777765
No 215
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=23.20 E-value=6.8e+02 Score=24.11 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHhhhhHHHHHHHhhHH-HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011147 110 LAFGEIIPQAVCSRYGLS-VGAKLSVLVRLIVIVLFPIAYPISKL 153 (492)
Q Consensus 110 lifGEiiPK~ia~~~~e~-ia~~~a~~v~~~~~ll~Pi~~~is~i 153 (492)
.++++. -|.. .+.+.+ -+.......-++.|.+||++|.++..
T Consensus 141 ~l~~~~-~~~a-~~~~~~~~~~~~l~~~~~~~W~~YPi~w~l~~~ 183 (222)
T PF01036_consen 141 LLFGPL-RRAA-SAVSPSVGLYNKLRNLTVVLWILYPIVWLLSEG 183 (222)
T ss_dssp HHHTHH-HHHH-TTSTHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHH-HHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444 3443 344554 44444556667778899999977643
No 216
>CHL00038 psbL photosystem II protein L
Probab=22.82 E-value=1.1e+02 Score=21.61 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 011147 11 PMFWVYLVICVGLVSFAGLM 30 (492)
Q Consensus 11 ~~~w~~l~iil~Llllsgff 30 (492)
.-+|-.+++.++.++||.+|
T Consensus 17 SLy~GLLlifvl~vlfssyf 36 (38)
T CHL00038 17 SLYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34566666666667777665
No 217
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=22.72 E-value=1e+02 Score=25.15 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=18.4
Q ss_pred eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147 351 ISKEELESLPSVDEEVIGIITLEDVMEEL 379 (492)
Q Consensus 351 ~lVv~~~~~pde~g~vvGIITlEDViEeL 379 (492)
+.++ |++|+.+|+++.++.++.-
T Consensus 15 VrlI------~~~g~~lGv~~~~eAl~~A 37 (76)
T PF05198_consen 15 VRLI------DEDGEQLGVMSLREALRLA 37 (76)
T ss_dssp EEEE-------TTS-EEEEEEHHHHHHHH
T ss_pred EEEE------CCCCcEeceEEHHHHHHHH
Confidence 7777 7999999999999998765
No 218
>PF14163 SieB: Superinfection exclusion protein B
Probab=22.54 E-value=2.6e+02 Score=25.35 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=23.3
Q ss_pred CCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcC
Q 011147 187 ELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG 238 (492)
Q Consensus 187 ~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~ 238 (492)
.|+++|+.++...+.-++.+ +.++.+++ ++..+.+.|
T Consensus 78 ~Lt~~EkavL~~~~~~~~~~-----------~~lp~~~~----~v~~L~~~g 114 (151)
T PF14163_consen 78 SLTPEEKAVLREFYIQGNNT-----------LTLPYNNP----AVKSLLQKG 114 (151)
T ss_pred hCCHHHHHHHHHHHHCCCCe-----------EEecCCCH----HHHHHHHCC
Confidence 48999999988777655433 35666653 334555555
No 219
>PHA02975 hypothetical protein; Provisional
Probab=21.26 E-value=1.6e+02 Score=23.75 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=10.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHH
Q 011147 8 CCEPMFWVYLVICVGLVSFAGLMS 31 (492)
Q Consensus 8 ~~~~~~w~~l~iil~LlllsgffS 31 (492)
||+..+| .++++++.+++..+|.
T Consensus 39 ~~~~~~~-~~ii~i~~v~~~~~~~ 61 (69)
T PHA02975 39 KKSSLSI-ILIIFIIFITCIAVFT 61 (69)
T ss_pred cCCchHH-HHHHHHHHHHHHHHHH
Confidence 4444443 3344455555555543
Done!