Query 011148
Match_columns 492
No_of_seqs 138 out of 495
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4160 BPI/LBP/CETP family pr 100.0 9.9E-64 2.1E-68 523.7 52.3 447 32-487 26-485 (492)
2 PF02886 LBP_BPI_CETP_C: LBP / 100.0 1.3E-46 2.7E-51 362.7 25.4 233 249-484 1-238 (238)
3 cd00025 BPI1 BPI/LBP/CETP N-te 100.0 3.7E-44 8E-49 340.8 28.1 220 35-260 1-223 (223)
4 smart00328 BPI1 BPI/LBP/CETP N 100.0 5.6E-44 1.2E-48 340.4 26.0 221 39-264 1-225 (225)
5 smart00329 BPI2 BPI/LBP/CETP C 100.0 7.1E-42 1.5E-46 320.2 26.5 197 284-480 1-202 (202)
6 cd00026 BPI2 BPI/LBP/CETP C-te 100.0 1.3E-41 2.9E-46 317.7 26.0 197 287-483 1-200 (200)
7 PF01273 LBP_BPI_CETP: LBP / B 100.0 7E-27 1.5E-31 212.3 23.4 161 44-216 1-163 (164)
8 cd00264 BPI BPI/LBP/CETP domai 99.9 1.6E-21 3.5E-26 184.0 23.6 201 35-258 1-208 (208)
9 cd00264 BPI BPI/LBP/CETP domai 99.9 2E-20 4.4E-25 176.5 19.4 194 287-483 1-208 (208)
10 PF06585 JHBP: Haemolymph juve 98.4 5.2E-05 1.1E-09 73.5 20.9 182 44-227 42-245 (248)
11 smart00700 JHBP Juvenile hormo 98.2 0.0007 1.5E-08 64.6 24.5 184 42-227 16-220 (225)
12 PF14613 DUF4449: Protein of u 91.7 0.65 1.4E-05 41.6 7.0 55 170-224 2-57 (164)
13 PF14356 DUF4403: Domain of un 63.1 2E+02 0.0043 30.1 14.4 119 136-258 296-419 (427)
14 PF10296 DUF2404: Putative int 60.0 59 0.0013 25.9 7.7 36 47-97 16-51 (91)
15 TIGR02610 PHA_gran_rgn putativ 45.1 1E+02 0.0022 24.8 6.6 30 177-206 61-90 (91)
16 PF09650 PHA_gran_rgn: Putativ 32.4 85 0.0018 25.0 4.3 24 182-205 63-86 (87)
17 PF06597 Clostridium_P47: Clos 30.7 6.7E+02 0.015 26.6 13.6 30 38-69 237-266 (456)
18 smart00328 BPI1 BPI/LBP/CETP N 23.2 6.2E+02 0.014 23.7 11.4 44 186-229 142-186 (225)
19 TIGR03545 conserved hypothetic 21.0 60 0.0013 35.3 2.0 14 136-149 452-465 (555)
No 1
>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]
Probab=100.00 E-value=9.9e-64 Score=523.74 Aligned_cols=447 Identities=29% Similarity=0.455 Sum_probs=408.3
Q ss_pred CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEeeEEEEEEEeCCceeEe-CCCeeEEEE
Q 011148 32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV 110 (492)
Q Consensus 32 ~~pGi~~rit~~gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~~G~~~~~is~i~I~~~~~~~~sv~~-~~~gl~l~i 110 (492)
.+||+++|++++|++|+++++...+++++.++++||+.++++.+++|++.|.++++++.++..+.+.+++ ++.++.|++
T Consensus 26 ~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s~~~~~~~~~~~~~~~ 105 (492)
T KOG4160|consen 26 HNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPSSQLSLVPQAGLSWSI 105 (492)
T ss_pred cCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecceeEEeccccccceeecCCceEEEEE
Confidence 5588999999999999999999999999999999999999999888999999999999999999999999 778999999
Q ss_pred ECceEEEEeEEEEEeccccceeeeeeeEEEEEEecEEEEEEEEEE-e-cCCeeEEEEeeeeEEeceEEEEEeCchhhHHH
Q 011148 111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-E-QGGIVKVILVDCGSHVRDISIKVDGGASWLYQ 188 (492)
Q Consensus 111 ~~~~i~i~~~~~~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~-~-~~G~p~v~~~~C~~~i~~v~i~l~g~~s~l~n 188 (492)
+++++.+.++|.+ .. |.+ ..+|.+++.++|+++.+.+.++ + .+|+|.++...|.+.++++++.+++-.+|+++
T Consensus 106 ~n~~~~~~~~~~~-~~-~~~---~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~~l~~ 180 (492)
T KOG4160|consen 106 TNANISLSGRWKA-RT-RFL---ALGGQVDASVKGMDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLASWLIQ 180 (492)
T ss_pred eeEEEEEeeeeEe-EE-EEE---ecCCeeEEEeecceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcHHHHH
Confidence 9999999999999 43 332 4559999999999999999996 5 78999999999999999999888855999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEEe-ccCcc
Q 011148 189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTA-ISGTS 266 (492)
Q Consensus 189 ~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~g~~~~-~~~~~ 266 (492)
.|.+.+.+.||+.++.++|+.+++.+ .++|.+++++|+..++|+...+||+++++|.+|+++++++++|++++ .++..
T Consensus 181 ~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~~~~~ 260 (492)
T KOG4160|consen 181 LFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSLGQVT 260 (492)
T ss_pred HHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEeccCCceecceEEEeeeeeEEeccCCCC
Confidence 99999999999999999999999999 58999999999999999999999999999999999999999999999 44443
Q ss_pred ccCcccCCCCCCcC-CCCCCceEEEEechhhhhhHHHHHHhcCeeeEEe--cccCCCc--ccccc--chhhccHhHHhcC
Q 011148 267 MLNYYHKGFESSAS-CSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLNTS--GWRHIIPQLYTQY 339 (492)
Q Consensus 267 ~~p~~~~~~p~~~~-~~~~~~Ml~i~lSey~~NS~l~~~~~~g~l~~~v--~~iP~~~--~lnTs--~~~~~~P~l~~~y 339 (492)
. |+ ..|...+ ++++++|+++++|||++||+++++|++|.+++.+ ++.|.+. .++|+ |+|+++|+++++|
T Consensus 261 ~-~~---~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l~~~~ 336 (492)
T KOG4160|consen 261 P-PF---PLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPELAEQY 336 (492)
T ss_pred C-cc---cCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHHHHHC
Confidence 3 32 2233333 3446999999999999999999999999999999 3444434 45666 4677999999999
Q ss_pred CCCCeEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEEEEEEEeCCEEEEEEEeeeEEEEee
Q 011148 340 PNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINV-LDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLT 418 (492)
Q Consensus 340 Pn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~v-~~~~~~~~v~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~ 418 (492)
||+++++++++.++|.|.+++++..+...+.+.+++ .++++..+++++++++++.+++++.++++.|++++++++++.+
T Consensus 337 Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~ 416 (492)
T KOG4160|consen 337 PNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVDANVSATLSLSGNKLIGNLSLNKFKIEVK 416 (492)
T ss_pred CCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEEEEEEEEEEEeeeeEEEEEEEeeeEEEEe
Confidence 999999999999999999999999999999998875 5666789999999999999999999999999999999999999
Q ss_pred eeccCCcchHHHHHHHHHHHhhccHHHHhhhccccccCCCCCCeeEeecEEEEECCEEEEEEeeeeecc
Q 011148 419 WSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAALSL 487 (492)
Q Consensus 419 ~S~iG~~~~~~L~~~l~~~l~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~~~~~ 487 (492)
+|++|.++.+.++.+++.+.+.++.|.+|++|++|||||.+.++.+.|+++.+++|++++++||.|.+.
T Consensus 417 ~s~~~~i~~~~l~~~~~~~~~~~l~p~~n~~L~~G~~lp~~~~~~~~~~~i~~~~~~L~l~~D~~~~~~ 485 (492)
T KOG4160|consen 417 FSNIGGISLDSLQALLSTLSKSVLQPLVNSKLRKGFPLPIPDGFKLINPEISIVDGFLLLSADFLYKRT 485 (492)
T ss_pred ecccCCccHHHHHHHHHHHHHHHhHHHHHHHHhcCccccccccceeecceEEEecCeEEEeccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999754
No 2
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=100.00 E-value=1.3e-46 Score=362.68 Aligned_cols=233 Identities=27% Similarity=0.455 Sum_probs=205.0
Q ss_pred ceeEEeEeEEEEeccCccccCcccCCCCCCcCCCCCCceEEEEechhhhhhHHHHHHhcCeeeEEe--cccCCCc--ccc
Q 011148 249 SSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLN 324 (492)
Q Consensus 249 ~~i~~~l~g~~~~~~~~~~~p~~~~~~p~~~~~~~~~~Ml~i~lSey~~NS~l~~~~~~g~l~~~v--~~iP~~~--~ln 324 (492)
+|||+++||+|++.++++++|+ .+|....++++++|+++|+|||++||++|+||++|.|++++ +++|+.+ .+|
T Consensus 1 ~~~e~~~kGe~~~~~~~~~~~~---~~~~~~~~~~~~~Ml~~~iSey~~NS~~~~~~~~g~l~~~it~~~~p~~~~~~l~ 77 (238)
T PF02886_consen 1 NYLETDHKGEFFPLNHHSPPPF---PPPVLPLPNSSSRMLYFWISEYVFNSLLYAAYQAGALDFTITPDMLPKSSPLLLT 77 (238)
T ss_dssp SEEEEEE--EEEETTSB---SS-----EE-GGGS-SSSSEEEEEEHHHHHHHHHHHHHTT-SEEEEEHHHCHCCHCHTTB
T ss_pred CccccccceeEEcCCCCCCCCC---CCCCcCCCCCCCcEEEEEEcHHHHHHHHHHHHHCCceEEEEecCccccccccccc
Confidence 5899999999999998877663 22222224678999999999999999999999999999999 6899874 789
Q ss_pred ccchhhccHhHHhcCCCCCeEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEEEEEEEeCCE
Q 011148 325 TSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINV-LDSSEVIPVACISLVINTSCFPEIKGDN 403 (492)
Q Consensus 325 Ts~~~~~~P~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~v-~~~~~~~~v~~l~~~~~~~~~~~~~~~~ 403 (492)
|.|+|.++|+++++|||+++++++++.++|.++++++++++.+.+++++++ .++++..+++++++++++++++++++++
T Consensus 78 T~~~g~~iP~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 157 (238)
T PF02886_consen 78 TSCIGDLIPELAKKYPNSPVELKIRSTKPPVVTISPGGVTVSLSGSVEVFVVPPNSSKVPLFSLNVDTSADVQLSISNNK 157 (238)
T ss_dssp HCCCCTCCCCHHHCSCC-CEEEEEEESS--EEEEETTEEEEEEEEEEEEEEE-TTCGCEEEEEEEEEEEEEEEEEEETTE
T ss_pred cccHHhhhhhHHhcCCCCeEEEEEEeCCCCEEEEEcCcEEEEEEEEEEEEEecCCCceEEEEEEEEEEEEEEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999999986 5667789999999999999999999999
Q ss_pred EEEEEEeeeEEEEeeeeccCCcchHHHHHHHHHHHhhccHHHHhhhccccccCCCCCCeeEeecEEEEECCEEEEEEeee
Q 011148 404 LAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLA 483 (492)
Q Consensus 404 l~~~l~l~~~~l~l~~S~iG~~~~~~L~~~l~~~l~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~ 483 (492)
++|++++.++++++.+|.||.++++.|+.+++.+++.+++|.+|++|++|||||.+++++|.|+++.+++||+++++|++
T Consensus 158 l~~~~~l~~~~~~~~~S~ig~~~~~~l~~~l~~~~~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~D~~ 237 (238)
T PF02886_consen 158 LTGSLSLDKFDLSLVSSSIGPFDVSSLEFLLNSILKEVLLPKLNKKLANGFPLPIPKGINLSNPQISIHDGYLLISTDFQ 237 (238)
T ss_dssp EEEEEEEEEEEEEEEEECTSS--GHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHTTCCCCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEecccEEEEEecCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcccEecccCCCeEEecCEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 011148 484 A 484 (492)
Q Consensus 484 ~ 484 (492)
|
T Consensus 238 ~ 238 (238)
T PF02886_consen 238 Y 238 (238)
T ss_dssp E
T ss_pred C
Confidence 7
No 3
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=100.00 E-value=3.7e-44 Score=340.76 Aligned_cols=220 Identities=30% Similarity=0.477 Sum_probs=212.2
Q ss_pred eEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEeeEEEEEEEeCCceeEe-CCCeeEEEEECc
Q 011148 35 YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGA 113 (492)
Q Consensus 35 Gi~~rit~~gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~~G~~~~~is~i~I~~~~~~~~sv~~-~~~gl~l~i~~~ 113 (492)
|+++|||+|||+|+++++++.+++++.++++||+++..+++++|++.|++++++|+++++|++++++ |++|+.+.++++
T Consensus 1 Gi~~rlt~~gL~y~~~~~~~~~~~~l~~i~iPdi~~~~~~~~iG~v~~~~s~i~I~~~~lp~s~l~~~~~~gi~~~~s~~ 80 (223)
T cd00025 1 GAVARLSPKGLKFAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLPSSSIKLVEVKGLDLSISNV 80 (223)
T ss_pred CeEEEEcHHHHHHHHHHHHHHHHHHhhcCCCCCccCccccccccEEEEEEEeEEEEEEecCCCceEEcCCCceEEEEeCC
Confidence 7999999999999999999999999999999999999999888999999999999999999999999 999999999999
Q ss_pred eEEEEeEEEEEeccccceeeeeeeEEEEEEecEEEEEEEEEE-ecCCeeEEEEeeeeEEeceEEEEEeCchhhHHHHHHH
Q 011148 114 TADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFE 192 (492)
Q Consensus 114 ~i~i~~~~~~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~-~~~G~p~v~~~~C~~~i~~v~i~l~g~~s~l~n~f~~ 192 (492)
++.++++|+|++. + ++++|.+++.++|+++++++.++ ++.|+|+++..+|++++++++++++||.+|+||.|.+
T Consensus 81 si~l~~~w~~~~~---~--i~~~G~~~l~v~gv~i~~~l~l~~d~~G~p~v~~~~C~~~v~~~~i~l~gg~~~l~~~f~~ 155 (223)
T cd00025 81 SIGLSGVWKYNYR---F--ILDGGNVELSVEGMNIQADLRLGRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFMN 155 (223)
T ss_pred eEEEEEEEEEeeE---E--EEecEEEEEEEeEEEEEEEEEEeeCCCCCeEEEeCCCCcccCcEEEEEeCChHHHHHHHHH
Confidence 9999999999975 3 58999999999999999999997 6679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEE
Q 011148 193 AFEGKIKSAVESAVTKKISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFT 260 (492)
Q Consensus 193 ~~~~~I~~~l~~~ic~~i~~~i~-~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~g~~~ 260 (492)
.+++.+++.+++++|+++...++ .+|..|+ +|+..|+|+.+.+||+|+++|.+|++|+++++||+||
T Consensus 156 ~i~~~l~~~l~~~iCp~i~~~i~~~~~~~l~-lp~~~~vd~~~~idysl~~~P~~t~~~l~~~~kg~f~ 223 (223)
T cd00025 156 FIESLLKKVLKGQLCPVIDASLVSMLESLLQ-LPKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223 (223)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhhcC-CceEeccCCcEEEEEEeecCCccccceeeeeeeEEEC
Confidence 99999999999999999999995 7888888 9999999999999999999999999999999999986
No 4
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=100.00 E-value=5.6e-44 Score=340.42 Aligned_cols=221 Identities=22% Similarity=0.379 Sum_probs=213.4
Q ss_pred EechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEeeEEEEEEEeCCceeEe-CCCeeEEEEECceEEE
Q 011148 39 VISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGATADC 117 (492)
Q Consensus 39 rit~~gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~~G~~~~~is~i~I~~~~~~~~sv~~-~~~gl~l~i~~~~i~i 117 (492)
|||++||+|+++++..++++++.++++||++++++++++|+++|++++|+|+++++|++++++ |+.|+.++++++++.+
T Consensus 1 rit~~gL~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~v~~~~~~i~I~~~~~~~s~~~~~p~~Gi~l~is~~si~~ 80 (225)
T smart00328 1 RITQKGLDYAAQEGALALQKELPKITIPDIRGDFAIKLLGIGHYSIYSLSISRLELPSSQLRFQPSKGLRLSISNLSLRV 80 (225)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCCCcCceecccccEEEEEEEEEEEEeccCCCCccccCCCCceEEEEcCceEEE
Confidence 799999999999999999999999999999999999988999999999999999999999999 8999999999999999
Q ss_pred EeEEEEEeccccceeeeeeeEEEEEEecEEEEEEEEEE-ecCCeeEEEEeeeeEEeceEEEEEeCc-hhhHHHHHHHHHH
Q 011148 118 GMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGG-ASWLYQALFEAFE 195 (492)
Q Consensus 118 ~~~~~~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~-~~~G~p~v~~~~C~~~i~~v~i~l~g~-~s~l~n~f~~~~~ 195 (492)
+++|+|++. + |+++|.+++.++++++++.+.+. +.+|+|++++.+|++++++++++++|+ .+|+||.|.+.++
T Consensus 81 ~~~~~~~~~---~--i~~~G~~~~~v~~~~i~~~l~l~~~~~G~p~v~~~~C~~~i~~v~l~~~G~~~swl~n~f~~~i~ 155 (225)
T smart00328 81 SGDLKGSLN---F--IKLEGNFQLSVEGLSISADLRIESNPTGRPTVTLSSCSSSIGDVRLHFSGSVLGWLINLFRKFIE 155 (225)
T ss_pred EEEEEEEEE---E--EEeeeEEEEEEeeEEEEEEEEeccCCCCCeeEEeCCcccCcceEEEEEECCchHHHHHHHHHHHH
Confidence 999999974 3 79999999999999999999996 889999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEEeccC
Q 011148 196 GKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISG 264 (492)
Q Consensus 196 ~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~g~~~~~~~ 264 (492)
+.||..++++||++|++.+ +++|++|+++|+.+++|+...+||+|+++|.++++|++++++|+|++.++
T Consensus 156 ~~i~~~l~~~IC~~i~~~i~~~l~~~L~~lp~~~~vd~~~~idysl~~~p~~t~~~l~~~~kg~f~~~~~ 225 (225)
T smart00328 156 NTLRNVLEGQICPVIDSAVSNKMNDYLQTLPLSISLDSLIGVDYSLVSPPRVTAEFLDVRLKGKFFWKNH 225 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeeecceeEEeeecccCCcccccccccccceeEEeCCC
Confidence 9999999999999999998 68999999999999999999999999999999999999999999998763
No 5
>smart00329 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain
Probab=100.00 E-value=7.1e-42 Score=320.20 Aligned_cols=197 Identities=27% Similarity=0.502 Sum_probs=190.0
Q ss_pred CCceEEEEechhhhhhHHHHHHhcCeeeEEe--cccCCCc--cccccchhhccHhHHhcCCCCCeEEEEeeCCCCeEEEE
Q 011148 284 PAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVS 359 (492)
Q Consensus 284 ~~~Ml~i~lSey~~NS~l~~~~~~g~l~~~v--~~iP~~~--~lnTs~~~~~~P~l~~~yPn~~~~l~i~~~~~P~v~~~ 359 (492)
++||+|+|+|||++||++++||++|.|++++ +++|+.+ ++||+|+|.++|+++++|||++|++++++.++|.++++
T Consensus 1 ~~~Mv~i~lSey~~NS~~~~~~~ag~l~~~it~~~ip~~~~~~lnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~ 80 (202)
T smart00329 1 SDRMVYLALSEYFFNSLLFVYQQAGALKLTITDDMLPKESKFLLTTCCFGTLVPEVAEQYPDSTLQLEISVLSPPRVTLQ 80 (202)
T ss_pred CCeEEEEEecHHHHhHHHHHHHHCCcceEEeccccCCCcCccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEe
Confidence 4799999999999999999999999999999 7999984 99999999999999999999999999999999999999
Q ss_pred eCcEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEEEEEEEeCCEEEEEEEeeeEEEEeeeeccCCcchHHHHHHHHHHH
Q 011148 360 EHDIGGTIDLDMTINV-LDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTIL 438 (492)
Q Consensus 360 ~~~~~v~~~~~v~~~v-~~~~~~~~v~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~~S~iG~~~~~~L~~~l~~~l 438 (492)
++++++.+.+.+++++ .++++..++|.++++++++++++++++++.|+++++++++++++|+||+++++.|+.+++.++
T Consensus 81 ~~~~~v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~~~~~~~~~~~l~g~l~l~~~~l~l~~S~ig~~~~~~L~~~l~~~~ 160 (202)
T smart00329 81 PGGATVYIHASVKVFAILPDSSRASLFLMSVDTNVSAKSSFKTKKLLGELKLDKLQVELKHSNVGGFDAELLEDLLNYLV 160 (202)
T ss_pred cCCEEEEEeEEEEEEEeCCCCCcceEEEEEEEEEEEEEEEEeCCEEEEEEEeccEEEEeeecccCCcCHHHHHHHHHHHH
Confidence 9999999999999986 456678999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHhhhccccccCCCCCCeeEeecEEEEECCEEEEEE
Q 011148 439 KTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCS 480 (492)
Q Consensus 439 ~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~ 480 (492)
+..++|.+|++|++|||||.+.++++.|+++.++|||+++++
T Consensus 161 ~~~~~P~vN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~ 202 (202)
T smart00329 161 PAVLLPKVNEKLRRGVPLPLPCGVQLINPVLQVHDDFLLLGA 202 (202)
T ss_pred HHhhHHHHHHHHcCCcCCCCCCceEEEcCEEEEEcCEEEEeC
Confidence 999999999999999999999999999999999999999985
No 6
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=100.00 E-value=1.3e-41 Score=317.68 Aligned_cols=197 Identities=37% Similarity=0.572 Sum_probs=190.0
Q ss_pred eEEEEechhhhhhHHHHHHhcCeeeEEe--cccCCCccccccchhhccHhHHhcCCCCCeEEEEeeCCCCeEEEEeCcEE
Q 011148 287 MIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIG 364 (492)
Q Consensus 287 Ml~i~lSey~~NS~l~~~~~~g~l~~~v--~~iP~~~~lnTs~~~~~~P~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~ 364 (492)
|+|+|+|||++||++++||++|.|++++ +++|...+|||+.++.++|+++++|||+++.+++++.+||.+++++++++
T Consensus 1 M~~~~~se~~~nSa~~~~~~ag~l~~~it~~~~p~~~~LnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~~~~~~ 80 (200)
T cd00026 1 MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQQLKISVSSPPHLVLSEGGAT 80 (200)
T ss_pred CEEEEEeHHHHhHHHHHHhhCCeEEEEEeCCcCCcccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEecCCEE
Confidence 8999999999999999999999999999 57886679999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEe-CCCceeeEEEEEEEEEEEEEEEEeCCEEEEEEEeeeEEEEeeeeccCCcchHHHHHHHHHHHhhccH
Q 011148 365 GTIDLDMTINVL-DSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFL 443 (492)
Q Consensus 365 v~~~~~v~~~v~-~~~~~~~v~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~~S~iG~~~~~~L~~~l~~~l~~~~~ 443 (492)
+.+.+.+++++. ++++..++|+++++++++++++++++|+.|+++++++++++++|+||+++++.|+.+++.+++..++
T Consensus 81 v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~~~~~~~~~~kL~g~l~l~~~~~~l~~S~ig~~~~~~L~~~l~~vl~~~vl 160 (200)
T cd00026 81 LAQQLDVEIFATLPDSQLRPLFRLGVDTSSSAQLSVSKKKLIGSLNLDRFLLELKSSNIGSFIPELLQAILTTILEITVL 160 (200)
T ss_pred EEEEEEEEEEEeCCCCccceEEEEEEEEEEEEEEEEeCCEEEEEEEeccEEEEEcccccCCcCHHHHHHHHHHHHHhccc
Confidence 999999999875 5556699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccCCCCCCeeEeecEEEEECCEEEEEEeee
Q 011148 444 PYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLA 483 (492)
Q Consensus 444 P~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~ 483 (492)
|.+|++|++|||||.++++++.|+++.++|||+.+++|++
T Consensus 161 p~~N~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~d~~ 200 (200)
T cd00026 161 PNVNDKLRRGFPLPLPKNFTLYDAEIQVHKDFLLLGADVQ 200 (200)
T ss_pred HHHHHHhcCCcCCCCCCcceEEccEEEEECCEEEEecCCC
Confidence 9999999999999999999999999999999999999984
No 7
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=99.96 E-value=7e-27 Score=212.30 Aligned_cols=161 Identities=29% Similarity=0.547 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEeeEEEEEEEeCCceeEe-CCCeeEEEEECceEEEEeEEE
Q 011148 44 GLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGATADCGMNWE 122 (492)
Q Consensus 44 gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~~G~~~~~is~i~I~~~~~~~~sv~~-~~~gl~l~i~~~~i~i~~~~~ 122 (492)
||+|+++++.+++++++.+++|||++++.+.+++|++.|++++|+|+++++|++++++ |+.++.+.+.+++++++++|.
T Consensus 1 gL~y~~~~~~~~l~~~l~~~~ipdi~~~~~~~~~g~~~~~i~~i~I~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 80 (164)
T PF01273_consen 1 GLDYANQVGIQILQKELQKIQIPDISGSFSSPFIGSVKYNISNIKISNFRLPQSSLELSPDGGIVLSIIPASASLSGNWP 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----EEEEECETTTCCEEEEEEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhhcCCCCCcccccccccccceEEEEEeEEEEEeecCCccceECCCCceEEEEeeeEEEEEEEEe
Confidence 8999999999999999999999999999998888999999999999999999999999 999999999999999999999
Q ss_pred EEeccccceeeeeeeEEEEEEecEEEEEEEEEE-ecCCeeEEEEeeeeEEeceEEEEEeCchhhHHHHHHHHHHHHHHHH
Q 011148 123 YSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSA 201 (492)
Q Consensus 123 ~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~-~~~G~p~v~~~~C~~~i~~v~i~l~g~~s~l~n~f~~~~~~~I~~~ 201 (492)
++.. + +.. +.++++++.+.+. +++|+|++++.+|++++++++++++|+.+|+||.|.+.+++.|++.
T Consensus 81 ~~~~--~---i~~-------~~~v~i~~~i~l~~~~~G~~~v~~~~C~~~i~~v~i~~~gg~~~l~~~~~~~l~~~i~~~ 148 (164)
T PF01273_consen 81 YKGG--F---IKI-------AVGVDISVTIRLERDESGRPTVVVGSCSSDIGSVDIKLHGGASWLYNLFINFLSKSIRSL 148 (164)
T ss_dssp EEEC--C---EEE-------EEEEEEEEEEEEEEECCTEEEEEEEEEEEEEEEEEEEETTCGCCHHHHHHHHTHHHHHHH
T ss_pred cCCC--h---hhh-------eeeEEEEEEEEEEEcCCCCeEEEECCCccCcceEEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence 9853 2 232 5678888899996 7789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011148 202 VESAVTKKISELITK 216 (492)
Q Consensus 202 l~~~ic~~i~~~i~~ 216 (492)
+++++|+++++.++.
T Consensus 149 l~~~iC~~i~~~l~~ 163 (164)
T PF01273_consen 149 LQKKICPVINSLLSN 163 (164)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhcchHhHHhhcC
Confidence 999999999887754
No 8
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.89 E-value=1.6e-21 Score=184.03 Aligned_cols=201 Identities=21% Similarity=0.290 Sum_probs=182.6
Q ss_pred eEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeec-----eeeeEEEEEeeEEEEEEEeCCceeEe-CCCeeEE
Q 011148 35 YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIP-----LIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLL 108 (492)
Q Consensus 35 Gi~~rit~~gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~-----~~G~~~~~is~i~I~~~~~~~~sv~~-~~~gl~l 108 (492)
|+++|+++++|+|+++.+.+..+. +..++.|++++..+++ ..|...|..++++++.+..+..++++ | .|+.+
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~-~g~~~ 78 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGAL-LLTLTIPDIPKALKLKLSGIIPLGAKKYPDMNLQLKILSLSSPTLKLSP-KGLDL 78 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHh-hcCcccCCCCCccccccccccceEEEEeeCCceEEEEEecCCCeEEEec-CCEEE
Confidence 589999999999999999999998 8889999999988764 36999999999999999999999999 6 89999
Q ss_pred EEECceEEEEeEEEEEeccccceeeeeeeEEEEEEecEEEEEEEEEEecCCeeEEEEeeeeEEeceEEEEEeCchhhHHH
Q 011148 109 AVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQ 188 (492)
Q Consensus 109 ~i~~~~i~i~~~~~~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~~~~G~p~v~~~~C~~~i~~v~i~l~g~~s~l~n 188 (492)
.++ +++++.+.|.++ ++|.+++.++ +++++++++..++|++.++..+|++++++++.+++|
T Consensus 79 ~~~-~~i~~~~~~~~~----------~~~~~~~~l~-v~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g------- 139 (208)
T cd00264 79 SQS-VSIELFVTWPAS----------DGGNPLFSLE-VEISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGG------- 139 (208)
T ss_pred EEE-EEEEEEEEeccC----------CCCCEEEEEE-EEEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEec-------
Confidence 999 999999998863 4677788887 888888888744499999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEE
Q 011148 189 ALFEAFEGKIKSAVESAVTKKISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGL 258 (492)
Q Consensus 189 ~f~~~~~~~I~~~l~~~ic~~i~~~i~-~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~g~ 258 (492)
|.+.+.+.+++.+++++|+.+...++ .+++.++.+|+ +|++....+||+++..|.++++|++++++|.
T Consensus 140 -~~~~~~~~l~~~l~~~lc~~v~~~~n~~l~~~l~l~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 208 (208)
T cd00264 140 -FGNFIVSLLQKVLNTILCPVVLPALNSKLRSGLPLLPV-PPVPSPAGVDYSLTAEPVLSASFLLLDADVT 208 (208)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcCCc-cCCCceeEEEEEEccCCceeccEEEEccccC
Confidence 55678889999999999999999994 78999999999 9999999999999999999999999999873
No 9
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.86 E-value=2e-20 Score=176.53 Aligned_cols=194 Identities=28% Similarity=0.422 Sum_probs=177.6
Q ss_pred eEEEEechhhhhhHHHHHHhcCeeeEEe--cccCCCccccccchhhccHhHHhcCCCCCeEEEEeeCCCCeEEEEeCcEE
Q 011148 287 MIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIG 364 (492)
Q Consensus 287 Ml~i~lSey~~NS~l~~~~~~g~l~~~v--~~iP~~~~lnTs~~~~~~P~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~ 364 (492)
|+++++|||++|++.++++++|.+...+ .++|....+.++ .++|+++.+||+.+++++.....+|.+.+.++++.
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~~g~~ 77 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGALLLTLTIPDIPKALKLKLS---GIIPLGAKKYPDMNLQLKILSLSSPTLKLSPKGLD 77 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHhhcCcccCCCCCccccccc---cccceEEEEeeCCceEEEEEecCCCeEEEecCCEE
Confidence 8999999999999999999999986666 566665444444 79999999999999999999999999999999999
Q ss_pred EEEEEEEEEEE-eCCC-ceeeEEEEEEEEEEEEEEEEeCCEEEEEEEeeeEEEEeeeecc---CCcchHHHHHHHHHHHh
Q 011148 365 GTIDLDMTINV-LDSS-EVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRI---GNLNMHIFQSMMSTILK 439 (492)
Q Consensus 365 v~~~~~v~~~v-~~~~-~~~~v~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~~S~i---G~~~~~~L~~~l~~~l~ 439 (492)
+.+.+++++.+ .+++ +..+.+.+++++++++++..+++++++.++..+.++...++++ |.+....|+..++..+.
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~~~~l~v~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g~~~~~~~~l~~~l~~~lc 157 (208)
T cd00264 78 LSQSVSIELFVTWPASDGGNPLFSLEVEISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGGFGNFIVSLLQKVLNTILC 157 (208)
T ss_pred EEEEEEEEEEEEeccCCCCCEEEEEEEEEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEeccchhHHHHHHHHHHHHHH
Confidence 99999999975 4554 6678899999999999999999999999999999999999999 99999999999999999
Q ss_pred hccHHHHhhhccccccC------CCCCCeeEee-cEEEEECCEEEEEEeee
Q 011148 440 TGFLPYINAHLRRGFPL------PLPSGFTLEN-AEIFCTNSWVVVCSDLA 483 (492)
Q Consensus 440 ~~~~P~lN~~L~~G~pL------P~~~~~~l~n-~~l~~~~~~l~i~~D~~ 483 (492)
..+.|.+|.++++|+|+ |.+.++++.+ +++.++++|+.+++|+.
T Consensus 158 ~~v~~~~n~~l~~~l~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 208 (208)
T cd00264 158 PVVLPALNSKLRSGLPLLPVPPVPSPAGVDYSLTAEPVLSASFLLLDADVT 208 (208)
T ss_pred HHHHHHHHHHHHccCCcCCccCCCceeEEEEEEccCCceeccEEEEccccC
Confidence 99999999999999999 9999999999 99999999999999863
No 10
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=98.40 E-value=5.2e-05 Score=73.47 Aligned_cols=182 Identities=15% Similarity=0.209 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeeece--------eeeEEEEEeeEEEEEEE---eCCceeEeCCCeeEEEEEC
Q 011148 44 GLDFFKNYLINKATSSIIPLELPDIEKSKKIPL--------IGKVHMALSNIIIYSVE---IDSSYVETGDPDLLLAVSG 112 (492)
Q Consensus 44 gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~--------~G~~~~~is~i~I~~~~---~~~~sv~~~~~gl~l~i~~ 112 (492)
-+....+...+.+.+-++.+.+|.+.- ..++. ..++...++|+++++++ +.+.++.+....+.+.+.-
T Consensus 42 cl~~~~~~~~~~l~~Gip~l~ip~ldP-l~i~~~~~~~~~~~~~~~~~~~n~~i~Gls~~~v~~~~~d~~~~~~~~~~~~ 120 (248)
T PF06585_consen 42 CLRESIENFRPYLAKGIPELGIPPLDP-LYIPEIDINFNSGPINLKANFKNVKIYGLSNFEVNKVSVDLKKLKLNFDLTF 120 (248)
T ss_dssp HHHHHHHHHHHHHTCEBGGGTBEETTT-EEEEEEEEEE-TTCTTEEEEEEEEEEESGGG-EEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCcccCCCCCCC-EEecceEEEeecCCceEEEEEEeEEEeccCCcEEEEEEEcCCCcEEEEEEEE
Confidence 333444555666666655555555421 11110 12355678888887543 2333333344566666665
Q ss_pred ceEEEEeEEEEEeccccceeeeeeeEEEEEEecEEEEEEEEEE--ecCC--eeEEEEeeeeEEeceEEEEEeCc------
Q 011148 113 ATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK--EQGG--IVKVILVDCGSHVRDISIKVDGG------ 182 (492)
Q Consensus 113 ~~i~i~~~~~~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~--~~~G--~p~v~~~~C~~~i~~v~i~l~g~------ 182 (492)
-.+.+.|+|+..-....+| |+.+|.+++.+++++++..+... ..+| +++++..++..+++++++++.+-
T Consensus 121 P~l~i~g~Y~~~g~i~~~p-i~g~G~~~~~l~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~~~~~~~~~~nl~~g~~~ 199 (248)
T PF06585_consen 121 PKLSIKGKYEIDGKILLLP-ISGKGDFNITLENVRATGTIKGEVYKKNGKTYLRITNFKIDFDLGNVKFDLENLFNGNKE 199 (248)
T ss_dssp -EEEEEEEEEEEEEECCEC-CCTEEEEEEEEEEEEEEEEEEEEEEEETS-EEEEEEEEEEEEEECEEEEEESHHHHHHHH
T ss_pred EEEEEEEEEEEeeeeeeeE-EeccceEEEEeeeEEEEEEEEEEEeecCCccEEEEEEEEEEEEeceEEEEeeccCCCCHH
Confidence 5788889888875433365 78899999999999998888884 3444 56666666677779999998753
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCc
Q 011148 183 ASWLYQALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQ 227 (492)
Q Consensus 183 ~s~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~ 227 (492)
.+...|-+.+..-..+-+.++..+-+.+.+.+ ..+|+.|..+|..
T Consensus 200 l~~~~n~~in~~~~~~~~~~~p~i~~~~~~~i~~~~N~~l~~~p~~ 245 (248)
T PF06585_consen 200 LSDFINKFINENWPELLNEVKPDIEEILSKIITDIINKILSKVPYD 245 (248)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 24444444444444444555555666666656 5689999998863
No 11
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=98.25 E-value=0.0007 Score=64.58 Aligned_cols=184 Identities=16% Similarity=0.231 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCccceeeece----ee----eEEEEEeeEEEEEEEeCCc-eeEe--CCCeeEEEE
Q 011148 42 KKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPL----IG----KVHMALSNIIIYSVEIDSS-YVET--GDPDLLLAV 110 (492)
Q Consensus 42 ~~gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~----~G----~~~~~is~i~I~~~~~~~~-sv~~--~~~gl~l~i 110 (492)
.+-+.-+.+.+.+.+.+-++.+.||.+.- ..++. .| .+...++|++++.++--.. +++. ....+.+.+
T Consensus 16 ~~Ci~~~~~~~~~~~~~G~Pe~gip~ldP-l~i~~~~i~~~~~~~~~~~~~~n~~i~Gl~~~~i~~~~~~~~~~~~~~~~ 94 (225)
T smart00700 16 SECLRDAIEALLPQLKNGIPEYGIPPLDP-LEIDDLKISIGSGVIGLRLTFKNVKIYGLSNFEITKFKMDLKDKKIELKI 94 (225)
T ss_pred hHHHHHHHHHHHHHHhcCCCccCCCCcCC-EEeeeEEEecCCCceEEEEEEEEeEEEcCcceEEEEEEecCCCcEEEEEE
Confidence 44555555666667777777666666531 11110 12 3567788888887642211 2333 345677777
Q ss_pred ECceEEEEeEEEEEeccccceeeeeeeEEEEEEecEEEEEEEEEE-ecCC--eeEEEEeeeeEEeceEEEEEeCc-----
Q 011148 111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGG--IVKVILVDCGSHVRDISIKVDGG----- 182 (492)
Q Consensus 111 ~~~~i~i~~~~~~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~-~~~G--~p~v~~~~C~~~i~~v~i~l~g~----- 182 (492)
.--.+.+.|+|+.+-....+| |+.+|.+++.++++++.+.+... ..+| ++.++...+...++++++++++-
T Consensus 95 ~~p~l~~~g~Y~~~g~ll~lp-i~g~G~~~~~l~n~~~~~~~~~~~~~~g~~yl~i~~~~~~~~~~~~~~~~~NLfngn~ 173 (225)
T smart00700 95 EFPKLNVKGDYKLDGRLLGLP-LNGKGDANFTLENVKIRGTLKLKLGPDGKTYLKIKSLKVNFEVGDVKSHLDNLFNGNK 173 (225)
T ss_pred ECCcEEEEeeeEeeeEEEEEE-ecCCCcEEEEEEeeEEEEEEEEEEccCCeEEEEEEEEEEEEEeceEEEEeeccCCCCH
Confidence 766688899988874334465 88899999999999988887774 3366 67788888899999999988753
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCc
Q 011148 183 -ASWLYQALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQ 227 (492)
Q Consensus 183 -~s~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~ 227 (492)
++...|.|.+.--..+-+.++..+.+.+.+.+ ..+|+.+..+|..
T Consensus 174 ~L~~~~n~~lNen~~~i~~e~~p~i~~~~~~~~~~~~n~~~~~vp~~ 220 (225)
T smart00700 174 DLNDAINKFLNENWKALINELLPAIVEKLESIFLDLVNKVFAKVPID 220 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 34556666666666677777777888887777 6789999998863
No 12
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=91.68 E-value=0.65 Score=41.63 Aligned_cols=55 Identities=18% Similarity=0.379 Sum_probs=48.5
Q ss_pred EEeceEEEEEeCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011148 170 SHVRDISIKVDGG-ASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSL 224 (492)
Q Consensus 170 ~~i~~v~i~l~g~-~s~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i~~ln~~L~~l 224 (492)
+++.++++++... ...||.+|...+-+.+|..|++.|-++|+..++.++..|-.+
T Consensus 2 V~i~~L~ikikkSkHklL~~~fKPll~~~vR~alqKalE~qIr~~~~~~D~~l~~i 57 (164)
T PF14613_consen 2 VDIDNLKIKIKKSKHKLLFKLFKPLLLKVVRPALQKALEKQIRDAFEKLDRFLYDI 57 (164)
T ss_pred cccccceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5678899999876 889999999999999999999999999999998888777554
No 13
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=63.12 E-value=2e+02 Score=30.15 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred eeEEEEEEe-cEEEEEEEEEEecCCeeEEEEeeeeEEeceEEEEEeCchhhHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 011148 136 SGAATVLVE-GLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESA----VTKKI 210 (492)
Q Consensus 136 ~G~~~~~v~-~~~i~~~l~l~~~~G~p~v~~~~C~~~i~~v~i~l~g~~s~l~n~f~~~~~~~I~~~l~~~----ic~~i 210 (492)
++.+-+.+. .-++..++.+ .|+|......=...+.|++..+.... ++.+.-...+++.|++.|+++ +-+.+
T Consensus 296 ~~rl~i~~~~~g~~~G~i~l---~G~P~yD~~~~~l~l~dld~~~~t~~-~l~~~a~wl~~~~i~~~i~~~~~~~l~~~l 371 (427)
T PF14356_consen 296 GDRLVIALDVTGSLNGTIYL---SGRPVYDPATQTLRLEDLDFDLDTKN-FLLKTAAWLLHGRIRKAIEEKLVFDLGPQL 371 (427)
T ss_pred CCcEEEEEEEEEEEEEEEEE---EEEEEECCCCCEEEEEeeEEEecccc-hHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Q ss_pred HHHHHHHHHHhhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEE
Q 011148 211 SELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGL 258 (492)
Q Consensus 211 ~~~i~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~g~ 258 (492)
.++-+.+++.|......--+.=.+.++=-=.....++++.|.+....+
T Consensus 372 ~~~~~~i~~~l~~~~~~~gv~l~g~~~~l~~~~i~~~~~~l~~~~~a~ 419 (427)
T PF14356_consen 372 EEAKKKINAALANYKPAPGVRLNGKVDSLRLDDIQVTPDGLVVQVNAE 419 (427)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEEceeEEeeEEEcCCEEEEEEEEe
No 14
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=60.05 E-value=59 Score=25.93 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEeeEEEEEEEeCCc
Q 011148 47 FFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSS 97 (492)
Q Consensus 47 y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~~G~~~~~is~i~I~~~~~~~~ 97 (492)
..++...+.|++++.+++.|.+- ..++|+++++++.
T Consensus 16 ~~~~~i~~~L~~kL~~i~~P~fl---------------~~i~v~~~~lG~~ 51 (91)
T PF10296_consen 16 AFRDKIKEKLQKKLNKIKLPSFL---------------DEISVTELDLGDS 51 (91)
T ss_pred HHHHHHHHHHHHHHccccCCCcc---------------CcEEEEEEECCCC
Confidence 45666778899999988877653 4455666666543
No 15
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=45.11 E-value=1e+02 Score=24.85 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=21.9
Q ss_pred EEEeCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011148 177 IKVDGGASWLYQALFEAFEGKIKSAVESAV 206 (492)
Q Consensus 177 i~l~g~~s~l~n~f~~~~~~~I~~~l~~~i 206 (492)
+++.-.++|+...|.+.+++.|++.+.+.+
T Consensus 61 v~v~v~Lg~Ll~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 61 IRVTAELGMLLSAMSGTIKSEIERALDKAL 90 (91)
T ss_pred EEEEEEhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445789999888888888888777654
No 16
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=32.36 E-value=85 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 011148 182 GASWLYQALFEAFEGKIKSAVESA 205 (492)
Q Consensus 182 ~~s~l~n~f~~~~~~~I~~~l~~~ 205 (492)
.++|+...|.+.+++.|++.+.+.
T Consensus 63 ~Lg~Ll~~f~~~Ie~~I~~~Ld~~ 86 (87)
T PF09650_consen 63 KLGFLLSPFKGKIEQEIEKNLDKL 86 (87)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHhh
Confidence 468898888888877777777654
No 17
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=30.72 E-value=6.7e+02 Score=26.58 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEechhHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 011148 38 AVISKKGLDFFKNYLINKATSSIIPLELPDIE 69 (492)
Q Consensus 38 ~rit~~gl~y~~~~~~~~l~~~l~~~~iPd~~ 69 (492)
+-|+++. ++++.++|.|...+++.+.-|++
T Consensus 237 flIS~~~--Flk~~llP~L~~~f~~~t~~dF~ 266 (456)
T PF06597_consen 237 FLISEEL--FLKHVLLPALPSAFKGATADDFE 266 (456)
T ss_pred EEecHHH--HHHHHHhhhhHhhcccCCccceE
Confidence 4454443 46777888888777666655544
No 18
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=23.19 E-value=6.2e+02 Score=23.66 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCccc
Q 011148 186 LYQALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIP 229 (492)
Q Consensus 186 l~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~ 229 (492)
...++.+.|.+.|.+.++..+.++|++.+ +.++..+...-..+|
T Consensus 142 ~~swl~n~f~~~i~~~i~~~l~~~IC~~i~~~i~~~l~~~L~~lp 186 (225)
T smart00328 142 VLGWLINLFRKFIENTLRNVLEGQICPVIDSAVSNKMNDYLQTLP 186 (225)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 46778899999999999999999999998 567877777544443
No 19
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.01 E-value=60 Score=35.30 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=6.0
Q ss_pred eeEEEEEEecEEEE
Q 011148 136 SGAATVLVEGLEVG 149 (492)
Q Consensus 136 ~G~~~~~v~~~~i~ 149 (492)
+|++++.+.++.++
T Consensus 452 ~~~~~~~~~~~~l~ 465 (555)
T TIGR03545 452 EGNIDNKYTQVDLS 465 (555)
T ss_pred EEEeeecccceeEe
Confidence 34444444444433
Done!