Query 011149
Match_columns 492
No_of_seqs 540 out of 3348
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 7.2E-52 1.6E-56 444.1 45.8 344 1-354 161-547 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 7.2E-44 1.6E-48 362.1 19.7 206 1-206 251-460 (519)
3 KOG0328 Predicted ATP-dependen 100.0 8.1E-42 1.8E-46 314.3 17.9 213 1-216 181-395 (400)
4 COG0513 SrmB Superfamily II DN 100.0 3.9E-41 8.3E-46 354.8 23.2 218 1-219 186-407 (513)
5 KOG0342 ATP-dependent RNA heli 100.0 1.2E-40 2.7E-45 327.9 22.2 228 1-231 242-472 (543)
6 KOG0330 ATP-dependent RNA heli 100.0 1E-40 2.2E-45 319.6 20.0 213 1-216 216-429 (476)
7 KOG0333 U5 snRNP-like RNA heli 100.0 3.4E-40 7.4E-45 326.1 19.0 201 1-204 408-634 (673)
8 PRK11776 ATP-dependent RNA hel 100.0 9.9E-38 2.1E-42 327.7 29.9 285 1-352 159-444 (460)
9 KOG0343 RNA Helicase [RNA proc 100.0 4.1E-38 8.9E-43 312.7 21.3 273 1-275 227-510 (758)
10 KOG0345 ATP-dependent RNA heli 100.0 7.8E-38 1.7E-42 306.1 18.6 219 1-220 169-390 (567)
11 KOG0336 ATP-dependent RNA heli 100.0 7.5E-38 1.6E-42 300.9 17.1 203 1-204 379-582 (629)
12 KOG0326 ATP-dependent RNA heli 100.0 6.5E-37 1.4E-41 286.3 15.6 210 1-214 239-449 (459)
13 KOG0340 ATP-dependent RNA heli 100.0 8E-36 1.7E-40 282.9 22.1 217 1-217 165-384 (442)
14 KOG0338 ATP-dependent RNA heli 100.0 1.7E-36 3.7E-41 298.8 15.7 202 1-205 339-544 (691)
15 KOG0341 DEAD-box protein abstr 100.0 2.1E-36 4.5E-41 289.2 9.5 191 1-195 338-529 (610)
16 KOG0327 Translation initiation 100.0 1.5E-34 3.2E-39 278.1 17.9 211 1-216 181-392 (397)
17 PTZ00110 helicase; Provisional 100.0 5.3E-34 1.1E-38 303.3 23.7 206 1-207 289-497 (545)
18 PRK10590 ATP-dependent RNA hel 100.0 8.9E-34 1.9E-38 296.8 23.1 210 1-213 161-371 (456)
19 KOG0335 ATP-dependent RNA heli 100.0 2E-34 4.3E-39 288.5 16.4 200 1-202 238-452 (482)
20 KOG0332 ATP-dependent RNA heli 100.0 5.7E-34 1.2E-38 271.8 18.7 215 4-221 248-471 (477)
21 PRK04537 ATP-dependent RNA hel 100.0 1.8E-33 3.8E-38 300.4 23.3 209 1-212 171-382 (572)
22 PRK04837 ATP-dependent RNA hel 100.0 1.3E-33 2.8E-38 293.4 21.7 212 1-215 169-383 (423)
23 PLN00206 DEAD-box ATP-dependen 100.0 4.8E-32 1E-36 287.4 22.9 204 1-207 282-488 (518)
24 PRK11192 ATP-dependent RNA hel 100.0 8.4E-32 1.8E-36 280.9 23.9 209 1-212 159-370 (434)
25 KOG0346 RNA helicase [RNA proc 100.0 6.5E-32 1.4E-36 262.5 19.4 206 1-207 182-423 (569)
26 PRK01297 ATP-dependent RNA hel 100.0 6.9E-31 1.5E-35 276.7 24.5 208 1-211 249-459 (475)
27 KOG0339 ATP-dependent RNA heli 100.0 1.8E-31 4E-36 263.0 17.8 197 1-199 382-580 (731)
28 KOG0348 ATP-dependent RNA heli 100.0 1.9E-31 4.2E-36 264.6 14.0 206 1-206 299-566 (708)
29 PTZ00424 helicase 45; Provisio 100.0 4.1E-30 9E-35 265.7 22.1 213 1-216 182-396 (401)
30 KOG0334 RNA helicase [RNA proc 100.0 4.9E-30 1.1E-34 273.7 17.8 204 1-206 527-732 (997)
31 KOG0347 RNA helicase [RNA proc 100.0 9.5E-31 2.1E-35 260.4 9.7 223 1-227 352-603 (731)
32 TIGR03817 DECH_helic helicase/ 100.0 1.6E-28 3.4E-33 268.9 25.2 241 6-254 173-448 (742)
33 KOG0337 ATP-dependent RNA heli 100.0 2.4E-29 5.1E-34 243.6 11.5 211 1-213 176-387 (529)
34 KOG4284 DEAD box protein [Tran 100.0 3.5E-28 7.6E-33 245.7 16.0 196 4-202 183-388 (980)
35 PLN03137 ATP-dependent DNA hel 100.0 6.1E-27 1.3E-31 256.0 24.5 199 1-204 593-797 (1195)
36 TIGR00614 recQ_fam ATP-depende 99.9 1.3E-26 2.9E-31 243.5 23.5 196 2-204 140-343 (470)
37 KOG0344 ATP-dependent RNA heli 99.9 2.7E-27 5.8E-32 238.9 15.9 200 5-207 305-508 (593)
38 PHA02653 RNA helicase NPH-II; 99.9 1.3E-25 2.9E-30 240.7 23.5 181 8-196 308-516 (675)
39 PRK11057 ATP-dependent DNA hel 99.9 1.7E-25 3.7E-30 241.4 22.9 189 6-203 158-352 (607)
40 TIGR01970 DEAH_box_HrpB ATP-de 99.9 7.3E-26 1.6E-30 248.1 19.6 242 1-272 126-395 (819)
41 TIGR02621 cas3_GSU0051 CRISPR- 99.9 6.4E-25 1.4E-29 236.9 19.5 184 2-192 182-389 (844)
42 PRK11664 ATP-dependent RNA hel 99.9 1.1E-24 2.4E-29 239.3 21.2 231 11-271 140-397 (812)
43 TIGR01389 recQ ATP-dependent D 99.9 7.6E-24 1.6E-28 228.9 22.3 191 6-203 146-340 (591)
44 PRK09751 putative ATP-dependen 99.9 4.4E-23 9.6E-28 234.6 25.8 253 6-269 145-461 (1490)
45 KOG0350 DEAD-box ATP-dependent 99.9 1.1E-23 2.4E-28 208.3 16.3 191 17-208 357-554 (620)
46 TIGR00580 mfd transcription-re 99.9 1.2E-22 2.6E-27 225.1 22.2 191 8-205 587-787 (926)
47 PRK11131 ATP-dependent RNA hel 99.9 1.3E-22 2.8E-27 227.1 20.8 239 1-270 199-468 (1294)
48 PRK13767 ATP-dependent helicas 99.9 5.1E-22 1.1E-26 221.9 25.5 251 9-268 196-473 (876)
49 COG0514 RecQ Superfamily II DN 99.9 2.8E-22 6E-27 208.4 20.9 192 6-205 150-348 (590)
50 TIGR01587 cas3_core CRISPR-ass 99.9 2.2E-22 4.7E-27 204.9 17.3 178 10-193 144-335 (358)
51 PRK10689 transcription-repair 99.9 3.5E-22 7.6E-27 225.9 20.5 189 11-206 739-937 (1147)
52 KOG0329 ATP-dependent RNA heli 99.9 3.3E-23 7.1E-28 189.0 6.2 171 4-210 201-372 (387)
53 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.2E-21 4.8E-26 217.9 20.7 240 1-271 192-462 (1283)
54 PRK02362 ski2-like helicase; P 99.9 6.4E-21 1.4E-25 210.8 22.0 190 2-195 150-398 (737)
55 PRK12898 secA preprotein trans 99.9 3.3E-21 7.1E-26 204.1 18.0 169 22-196 410-588 (656)
56 PRK00254 ski2-like helicase; P 99.9 1.7E-20 3.7E-25 206.9 21.7 206 1-212 150-404 (720)
57 PRK04914 ATP-dependent helicas 99.9 9.2E-21 2E-25 209.4 19.4 163 73-236 479-647 (956)
58 PRK10917 ATP-dependent DNA hel 99.9 2.1E-20 4.6E-25 204.1 22.0 176 11-192 400-587 (681)
59 KOG0349 Putative DEAD-box RNA 99.9 4.2E-21 9.2E-26 186.8 13.1 189 1-192 375-613 (725)
60 TIGR00643 recG ATP-dependent D 99.8 9.5E-20 2.1E-24 197.6 21.0 165 20-192 386-564 (630)
61 PRK09401 reverse gyrase; Revie 99.8 2.4E-19 5.1E-24 203.5 17.7 163 4-180 227-430 (1176)
62 PRK01172 ski2-like helicase; P 99.8 5.9E-19 1.3E-23 193.7 20.1 186 3-194 149-378 (674)
63 PRK09200 preprotein translocas 99.8 1.2E-18 2.6E-23 188.4 20.5 169 22-196 365-543 (790)
64 PRK05298 excinuclease ABC subu 99.8 3.5E-18 7.6E-23 185.3 23.2 138 76-214 434-586 (652)
65 TIGR00631 uvrb excinuclease AB 99.8 5.5E-18 1.2E-22 182.6 19.7 128 76-204 430-563 (655)
66 COG1201 Lhr Lhr-like helicases 99.8 2.3E-17 5E-22 177.8 24.2 203 10-217 174-387 (814)
67 TIGR03158 cas3_cyano CRISPR-as 99.8 5.6E-18 1.2E-22 171.8 18.0 157 12-179 173-357 (357)
68 PRK14701 reverse gyrase; Provi 99.8 1.5E-18 3.2E-23 201.1 15.1 187 4-202 226-464 (1638)
69 KOG0351 ATP-dependent DNA heli 99.8 8.5E-18 1.9E-22 184.5 19.0 195 6-206 404-604 (941)
70 COG1111 MPH1 ERCC4-like helica 99.8 3E-18 6.5E-23 171.3 13.6 121 73-194 348-481 (542)
71 PHA02558 uvsW UvsW helicase; P 99.8 1.3E-17 2.9E-22 176.5 19.4 112 74-185 329-443 (501)
72 TIGR03714 secA2 accessory Sec 99.8 1.9E-17 4.1E-22 177.7 19.8 167 22-196 361-539 (762)
73 cd00079 HELICc Helicase superf 99.8 1.1E-17 2.4E-22 144.4 13.3 127 63-190 3-131 (131)
74 TIGR00963 secA preprotein tran 99.8 1.5E-17 3.2E-22 177.4 16.2 168 22-196 342-519 (745)
75 TIGR01054 rgy reverse gyrase. 99.7 4.7E-17 1E-21 185.2 18.3 160 16-203 260-431 (1171)
76 COG1202 Superfamily II helicas 99.7 1E-16 2.2E-21 161.5 14.4 174 14-194 366-553 (830)
77 PRK12906 secA preprotein trans 99.7 7.7E-17 1.7E-21 173.4 14.3 167 22-195 377-554 (796)
78 COG1643 HrpA HrpA-like helicas 99.7 1.5E-16 3.3E-21 172.7 16.5 234 10-271 185-446 (845)
79 PF00271 Helicase_C: Helicase 99.7 4.8E-17 1E-21 127.7 7.1 76 107-182 2-78 (78)
80 KOG0922 DEAH-box RNA helicase 99.7 3.8E-16 8.2E-21 161.0 15.6 225 19-271 194-448 (674)
81 KOG0352 ATP-dependent DNA heli 99.7 9.9E-17 2.2E-21 156.4 10.4 179 19-203 175-371 (641)
82 TIGR00603 rad25 DNA repair hel 99.7 8.6E-16 1.9E-20 164.9 17.7 118 73-194 480-607 (732)
83 PRK09694 helicase Cas3; Provis 99.7 1.5E-15 3.3E-20 167.3 19.7 107 74-183 546-664 (878)
84 PRK12900 secA preprotein trans 99.7 4.9E-16 1.1E-20 168.3 14.1 168 23-196 536-713 (1025)
85 PRK13766 Hef nuclease; Provisi 99.7 1E-15 2.2E-20 171.1 15.0 121 72-193 346-478 (773)
86 KOG0923 mRNA splicing factor A 99.6 1.3E-15 2.8E-20 155.8 13.4 243 18-287 408-681 (902)
87 KOG0354 DEAD-box like helicase 99.6 1.9E-15 4.1E-20 159.6 14.6 123 72-196 394-531 (746)
88 COG1204 Superfamily II helicas 99.6 5.9E-15 1.3E-19 161.0 17.4 173 18-192 178-406 (766)
89 COG1200 RecG RecG-like helicas 99.6 5.5E-14 1.2E-18 146.6 22.3 177 13-195 403-592 (677)
90 TIGR00595 priA primosomal prot 99.6 4.6E-14 9.9E-19 148.8 16.5 95 101-195 271-382 (505)
91 COG0556 UvrB Helicase subunit 99.6 2.2E-13 4.8E-18 137.1 20.3 165 20-193 386-556 (663)
92 KOG0353 ATP-dependent DNA heli 99.5 6.5E-14 1.4E-18 135.0 13.4 188 6-197 234-470 (695)
93 PRK05580 primosome assembly pr 99.5 1.8E-13 3.8E-18 149.4 18.1 102 100-201 438-556 (679)
94 COG4098 comFA Superfamily II D 99.5 4.9E-13 1.1E-17 127.9 18.7 175 18-197 231-419 (441)
95 KOG0924 mRNA splicing factor A 99.5 5.1E-14 1.1E-18 144.5 12.8 225 19-270 499-755 (1042)
96 smart00490 HELICc helicase sup 99.5 2.4E-14 5.1E-19 112.8 7.9 80 103-182 2-82 (82)
97 KOG0920 ATP-dependent RNA heli 99.5 6.5E-13 1.4E-17 144.3 18.8 245 4-268 303-602 (924)
98 COG1205 Distinct helicase fami 99.5 4.3E-13 9.3E-18 148.5 17.3 194 10-207 222-437 (851)
99 KOG0950 DNA polymerase theta/e 99.5 2.6E-13 5.6E-18 144.9 14.2 118 87-204 459-621 (1008)
100 KOG0925 mRNA splicing factor A 99.5 2.3E-12 5.1E-17 128.1 17.3 228 11-271 183-446 (699)
101 COG1203 CRISPR-associated heli 99.5 7.9E-13 1.7E-17 145.7 15.2 172 20-194 370-550 (733)
102 KOG0947 Cytoplasmic exosomal R 99.4 3.3E-12 7.1E-17 135.8 17.9 106 89-194 568-723 (1248)
103 COG1197 Mfd Transcription-repa 99.4 2.5E-12 5.5E-17 141.4 17.4 187 11-204 733-929 (1139)
104 PRK12904 preprotein translocas 99.4 1.5E-12 3.3E-17 141.1 15.5 167 22-195 367-574 (830)
105 KOG0951 RNA helicase BRR2, DEA 99.4 9.1E-12 2E-16 135.5 17.7 179 19-202 473-710 (1674)
106 KOG0952 DNA/RNA helicase MER3/ 99.4 2.2E-11 4.8E-16 131.0 20.1 176 18-197 273-494 (1230)
107 PRK13104 secA preprotein trans 99.4 1.5E-11 3.2E-16 133.7 18.9 167 22-195 381-588 (896)
108 KOG4150 Predicted ATP-dependen 99.4 7.2E-11 1.6E-15 119.4 22.1 200 19-222 450-670 (1034)
109 PRK13107 preprotein translocas 99.4 2.1E-11 4.6E-16 132.2 18.2 166 22-195 386-592 (908)
110 KOG0926 DEAH-box RNA helicase 99.3 8.6E-12 1.9E-16 130.4 13.4 204 20-243 414-740 (1172)
111 KOG0331 ATP-dependent RNA heli 99.3 7.5E-12 1.6E-16 128.7 12.1 250 88-350 165-458 (519)
112 PLN03142 Probable chromatin-re 99.3 2.6E-11 5.6E-16 135.5 12.7 135 72-206 470-613 (1033)
113 KOG0948 Nuclear exosomal RNA h 99.3 2.7E-11 5.8E-16 126.1 11.5 107 88-194 383-539 (1041)
114 PRK10590 ATP-dependent RNA hel 99.2 5E-11 1.1E-15 125.2 12.4 255 90-352 77-363 (456)
115 COG1061 SSL2 DNA or RNA helica 99.2 8.2E-11 1.8E-15 122.6 12.9 93 87-180 282-375 (442)
116 KOG0921 Dosage compensation co 99.1 5E-09 1.1E-13 111.2 21.5 105 88-193 643-773 (1282)
117 PRK11448 hsdR type I restricti 99.1 5.6E-10 1.2E-14 127.0 15.2 93 88-182 698-801 (1123)
118 PF08152 GUCT: GUCT (NUC152) d 99.1 2.1E-10 4.7E-15 92.9 6.0 95 269-370 1-97 (97)
119 COG0513 SrmB Superfamily II DN 99.0 1.5E-10 3.2E-15 122.9 5.0 239 91-341 102-380 (513)
120 KOG0339 ATP-dependent RNA heli 99.0 2.4E-09 5.2E-14 107.5 13.1 250 90-353 298-588 (731)
121 COG4581 Superfamily II RNA hel 99.0 7.5E-09 1.6E-13 114.3 17.3 104 89-192 380-535 (1041)
122 PRK04537 ATP-dependent RNA hel 98.9 2.6E-08 5.6E-13 107.3 15.4 244 89-340 85-363 (572)
123 KOG0341 DEAD-box protein abstr 98.9 7.8E-09 1.7E-13 100.6 9.1 242 88-343 246-530 (610)
124 KOG0953 Mitochondrial RNA heli 98.9 1.1E-08 2.5E-13 103.9 10.1 114 77-193 347-476 (700)
125 PRK12903 secA preprotein trans 98.8 9.8E-08 2.1E-12 103.3 17.3 166 22-195 363-540 (925)
126 COG1198 PriA Primosomal protei 98.8 7.8E-08 1.7E-12 104.0 16.1 183 18-202 347-611 (730)
127 KOG0336 ATP-dependent RNA heli 98.8 1.4E-08 3.1E-13 99.5 9.1 252 88-353 294-585 (629)
128 PRK12326 preprotein translocas 98.8 8.5E-08 1.9E-12 102.3 14.2 168 22-195 364-548 (764)
129 PF00098 zf-CCHC: Zinc knuckle 98.7 3.8E-09 8.2E-14 57.4 1.5 17 476-492 2-18 (18)
130 KOG0330 ATP-dependent RNA heli 98.7 9.7E-09 2.1E-13 100.3 4.4 248 75-340 117-406 (476)
131 COG1110 Reverse gyrase [DNA re 98.7 2.8E-07 6.1E-12 100.0 15.2 131 19-165 275-416 (1187)
132 KOG0338 ATP-dependent RNA heli 98.7 1.3E-07 2.8E-12 95.4 11.0 255 89-351 253-544 (691)
133 TIGR01407 dinG_rel DnaQ family 98.7 5.8E-07 1.3E-11 101.4 17.3 119 87-206 673-828 (850)
134 PRK12899 secA preprotein trans 98.6 3E-07 6.4E-12 100.7 13.4 167 22-195 505-682 (970)
135 PF06862 DUF1253: Protein of u 98.6 3.4E-06 7.4E-11 86.3 19.1 182 21-202 216-423 (442)
136 KOG0335 ATP-dependent RNA heli 98.6 5.9E-08 1.3E-12 98.7 6.2 253 89-352 153-456 (482)
137 KOG0385 Chromatin remodeling c 98.6 7.4E-07 1.6E-11 94.0 14.2 137 71-207 469-614 (971)
138 PRK12901 secA preprotein trans 98.6 1.8E-06 4E-11 95.0 17.4 166 23-195 566-742 (1112)
139 PRK13103 secA preprotein trans 98.6 1.2E-06 2.5E-11 96.0 15.8 168 22-195 386-592 (913)
140 PRK11634 ATP-dependent RNA hel 98.5 4.2E-08 9E-13 106.4 3.7 241 88-342 74-353 (629)
141 PF03880 DbpA: DbpA RNA bindin 98.5 1.1E-07 2.4E-12 73.4 4.6 61 287-354 1-61 (74)
142 PRK11776 ATP-dependent RNA hel 98.5 1.3E-07 2.7E-12 99.8 4.8 255 89-351 73-359 (460)
143 KOG0384 Chromodomain-helicase 98.4 8.2E-07 1.8E-11 97.9 10.5 121 74-194 684-811 (1373)
144 KOG0390 DNA repair protein, SN 98.4 2.9E-06 6.3E-11 91.7 12.6 119 72-190 577-701 (776)
145 PRK11192 ATP-dependent RNA hel 98.4 4.6E-07 1E-11 94.8 5.9 245 89-343 74-354 (434)
146 CHL00122 secA preprotein trans 98.3 2E-05 4.4E-10 86.1 18.1 126 22-154 361-491 (870)
147 PRK04837 ATP-dependent RNA hel 98.3 9E-07 2E-11 92.3 7.4 241 89-341 84-362 (423)
148 KOG0333 U5 snRNP-like RNA heli 98.3 7.4E-07 1.6E-11 90.4 6.0 242 88-342 322-625 (673)
149 KOG0387 Transcription-coupled 98.3 3.4E-06 7.3E-11 89.5 11.0 122 72-193 529-657 (923)
150 KOG0347 RNA helicase [RNA proc 98.3 1.3E-06 2.8E-11 89.1 6.5 244 91-341 266-570 (731)
151 KOG0392 SNF2 family DNA-depend 98.2 9.2E-06 2E-10 89.7 11.8 122 72-193 1309-1453(1549)
152 PRK08074 bifunctional ATP-depe 98.2 3.3E-05 7.2E-10 87.9 16.8 80 87-166 751-835 (928)
153 KOG0391 SNF2 family DNA-depend 98.2 1.6E-05 3.6E-10 87.2 13.3 124 71-194 1258-1387(1958)
154 PTZ00110 helicase; Provisional 98.2 9.7E-07 2.1E-11 94.7 3.6 254 89-351 204-495 (545)
155 PTZ00368 universal minicircle 98.2 3.2E-06 7E-11 74.7 6.2 68 415-492 27-95 (148)
156 PTZ00368 universal minicircle 98.2 6.2E-06 1.3E-10 72.9 7.5 69 415-492 52-121 (148)
157 KOG0949 Predicted helicase, DE 98.1 1E-05 2.2E-10 87.5 10.2 91 114-206 965-1058(1330)
158 COG5082 AIR1 Arginine methyltr 98.1 1.6E-06 3.5E-11 77.3 2.8 53 416-491 61-115 (190)
159 PRK12902 secA preprotein trans 98.1 0.00015 3.3E-09 79.4 17.0 126 22-154 376-506 (939)
160 KOG1000 Chromatin remodeling p 98.1 1.5E-05 3.3E-10 80.5 8.7 102 87-188 491-595 (689)
161 PRK07246 bifunctional ATP-depe 98.0 4.7E-05 1E-09 85.3 13.5 77 86-165 645-724 (820)
162 KOG0345 ATP-dependent RNA heli 98.0 1.5E-05 3.3E-10 80.1 7.9 244 90-351 81-374 (567)
163 PRK11747 dinG ATP-dependent DN 98.0 0.00012 2.6E-09 80.8 15.0 78 86-166 532-616 (697)
164 COG1199 DinG Rad3-related DNA 97.9 0.00031 6.7E-09 77.5 17.6 102 88-192 479-615 (654)
165 TIGR00348 hsdR type I site-spe 97.9 0.00015 3.3E-09 79.7 14.3 93 88-181 514-634 (667)
166 COG4096 HsdR Type I site-speci 97.9 5E-05 1.1E-09 81.7 9.9 92 88-181 426-525 (875)
167 COG0553 HepA Superfamily II DN 97.9 9.3E-05 2E-09 84.2 12.9 118 73-190 692-816 (866)
168 TIGR02562 cas3_yersinia CRISPR 97.9 0.00022 4.7E-09 79.4 15.0 89 92-183 760-881 (1110)
169 KOG0334 RNA helicase [RNA proc 97.9 4.3E-05 9.2E-10 83.9 9.2 249 89-352 439-732 (997)
170 KOG1123 RNA polymerase II tran 97.9 9E-05 1.9E-09 75.2 10.3 106 73-182 527-635 (776)
171 KOG1002 Nucleotide excision re 97.8 0.0001 2.2E-09 74.6 10.4 121 73-193 620-748 (791)
172 KOG0340 ATP-dependent RNA heli 97.8 1.9E-05 4E-10 76.9 4.6 247 79-339 63-359 (442)
173 PF13307 Helicase_C_2: Helicas 97.8 7.7E-05 1.7E-09 67.4 7.7 105 87-193 8-149 (167)
174 KOG0389 SNF2 family DNA-depend 97.8 0.00016 3.6E-09 77.0 10.6 122 73-194 761-888 (941)
175 KOG0388 SNF2 family DNA-depend 97.7 0.00016 3.5E-09 76.1 10.1 121 72-192 1027-1152(1185)
176 KOG0386 Chromatin remodeling c 97.7 0.00036 7.9E-09 76.3 12.9 121 71-191 708-833 (1157)
177 TIGR00580 mfd transcription-re 97.7 7.9E-05 1.7E-09 84.0 7.2 89 73-161 484-579 (926)
178 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.0014 3.1E-08 70.7 16.0 78 87-166 469-561 (636)
179 PRK10689 transcription-repair 97.5 4.7E-05 1E-09 87.7 3.3 231 86-332 647-910 (1147)
180 TIGR00614 recQ_fam ATP-depende 97.5 0.00022 4.8E-09 75.4 7.9 249 87-340 50-332 (470)
181 PF13696 zf-CCHC_2: Zinc knuck 97.5 2.8E-05 6.2E-10 48.3 0.7 17 476-492 10-26 (32)
182 KOG3973 Uncharacterized conser 97.5 0.0012 2.6E-08 63.8 11.9 13 338-350 284-296 (465)
183 PRK10917 ATP-dependent DNA hel 97.5 0.00013 2.9E-09 80.4 5.7 89 73-161 294-389 (681)
184 TIGR00604 rad3 DNA repair heli 97.5 0.0048 1E-07 68.6 17.6 78 88-166 522-615 (705)
185 PRK01297 ATP-dependent RNA hel 97.4 8E-05 1.7E-09 78.9 3.2 245 89-340 163-441 (475)
186 KOG4400 E3 ubiquitin ligase in 97.4 0.00014 3E-09 70.7 4.5 66 416-491 93-160 (261)
187 KOG1015 Transcription regulato 97.4 0.0015 3.2E-08 71.1 11.8 119 72-190 1125-1271(1567)
188 KOG0921 Dosage compensation co 97.4 0.0012 2.5E-08 71.6 11.0 22 322-347 1075-1097(1282)
189 PLN00206 DEAD-box ATP-dependen 97.4 0.00019 4.1E-09 76.8 5.3 250 88-351 196-486 (518)
190 TIGR00596 rad1 DNA repair prot 97.3 0.00084 1.8E-08 74.6 9.8 40 71-110 268-317 (814)
191 KOG0328 Predicted ATP-dependen 97.3 0.00016 3.4E-09 68.4 3.5 246 87-340 94-369 (400)
192 KOG4284 DEAD box protein [Tran 97.3 0.0015 3.2E-08 68.6 9.6 248 88-343 93-381 (980)
193 TIGR03817 DECH_helic helicase/ 97.2 0.0009 2E-08 74.5 8.5 236 87-332 80-377 (742)
194 COG0653 SecA Preprotein transl 97.2 0.0014 3E-08 71.7 9.3 119 75-195 416-546 (822)
195 PF13917 zf-CCHC_3: Zinc knuck 97.1 0.00018 3.9E-09 48.2 1.0 17 476-492 6-22 (42)
196 KOG0951 RNA helicase BRR2, DEA 97.1 0.015 3.2E-07 65.6 15.6 184 10-202 1279-1502(1674)
197 KOG0342 ATP-dependent RNA heli 97.0 0.0012 2.6E-08 67.2 6.1 235 89-343 155-438 (543)
198 COG4889 Predicted helicase [Ge 97.0 0.00059 1.3E-08 73.6 3.7 93 89-181 461-572 (1518)
199 PRK14873 primosome assembly pr 97.0 0.011 2.3E-07 64.8 13.5 69 127-202 462-546 (665)
200 PF14787 zf-CCHC_5: GAG-polypr 96.9 0.00041 9E-09 44.0 1.3 17 475-491 3-19 (36)
201 PLN03137 ATP-dependent DNA hel 96.9 0.0025 5.4E-08 72.2 8.2 59 87-145 499-560 (1195)
202 KOG0337 ATP-dependent RNA heli 96.9 0.015 3.2E-07 58.4 12.1 232 89-338 91-365 (529)
203 smart00343 ZnF_C2HC zinc finge 96.8 0.00051 1.1E-08 41.3 0.9 15 477-491 2-16 (26)
204 PF13871 Helicase_C_4: Helicas 96.8 0.0058 1.3E-07 59.2 8.4 79 128-206 52-142 (278)
205 PRK11057 ATP-dependent DNA hel 96.7 0.0014 3.1E-08 71.5 4.5 59 87-145 64-123 (607)
206 COG5082 AIR1 Arginine methyltr 96.7 0.0022 4.8E-08 57.6 4.8 73 416-491 98-171 (190)
207 TIGR01389 recQ ATP-dependent D 96.7 0.0015 3.3E-08 71.1 4.3 74 87-160 52-132 (591)
208 PTZ00424 helicase 45; Provisio 96.7 0.0015 3.2E-08 67.6 3.9 240 88-339 96-372 (401)
209 KOG0326 ATP-dependent RNA heli 96.6 0.0036 7.9E-08 60.4 5.9 249 89-351 154-439 (459)
210 KOG0343 RNA Helicase [RNA proc 96.6 0.00037 8E-09 71.7 -0.8 237 89-343 142-423 (758)
211 KOG0109 RNA-binding protein LA 96.5 0.00093 2E-08 63.2 1.0 17 476-492 162-178 (346)
212 PRK05580 primosome assembly pr 96.5 0.013 2.7E-07 64.8 9.9 91 72-163 173-266 (679)
213 TIGR00595 priA primosomal prot 96.5 0.014 2.9E-07 62.2 9.6 88 73-161 9-99 (505)
214 KOG4439 RNA polymerase II tran 96.4 0.042 9.2E-07 58.6 12.4 118 73-190 729-852 (901)
215 KOG0329 ATP-dependent RNA heli 96.4 0.014 3E-07 54.8 7.7 121 90-217 112-249 (387)
216 PF02399 Herpes_ori_bp: Origin 96.3 0.13 2.8E-06 56.5 16.1 110 75-191 269-385 (824)
217 KOG0348 ATP-dependent RNA heli 96.3 0.0087 1.9E-07 61.7 6.6 121 89-214 212-360 (708)
218 PRK14873 primosome assembly pr 96.2 0.026 5.6E-07 61.9 10.4 91 72-163 171-265 (665)
219 TIGR00643 recG ATP-dependent D 96.2 0.015 3.4E-07 63.7 8.7 89 73-161 268-363 (630)
220 KOG0346 RNA helicase [RNA proc 96.1 0.033 7.2E-07 56.3 9.6 108 89-207 94-223 (569)
221 TIGR02621 cas3_GSU0051 CRISPR- 96.1 0.0097 2.1E-07 66.1 6.4 53 89-145 62-143 (844)
222 KOG4400 E3 ubiquitin ligase in 96.1 0.007 1.5E-07 58.8 4.5 16 477-492 167-182 (261)
223 KOG0344 ATP-dependent RNA heli 96.0 0.0016 3.4E-08 67.7 -0.1 246 88-339 209-493 (593)
224 KOG2340 Uncharacterized conser 95.8 0.05 1.1E-06 56.3 9.3 182 21-202 470-676 (698)
225 KOG0350 DEAD-box ATP-dependent 95.7 0.0063 1.4E-07 62.2 2.6 72 279-352 476-552 (620)
226 PRK09401 reverse gyrase; Revie 95.6 0.011 2.3E-07 68.9 4.4 73 87-160 122-206 (1176)
227 COG1200 RecG RecG-like helicas 95.5 0.026 5.7E-07 60.3 6.1 85 77-161 300-390 (677)
228 PF00098 zf-CCHC: Zinc knuckle 95.3 0.013 2.8E-07 31.7 1.8 17 417-433 2-18 (18)
229 KOG0332 ATP-dependent RNA heli 95.3 0.0033 7.1E-08 62.0 -1.2 92 247-341 342-443 (477)
230 smart00492 HELICc3 helicase su 95.1 0.13 2.8E-06 44.9 8.5 46 121-166 31-79 (141)
231 PRK09751 putative ATP-dependen 95.0 0.089 1.9E-06 62.2 9.1 69 89-161 38-130 (1490)
232 COG1110 Reverse gyrase [DNA re 95.0 0.11 2.4E-06 57.9 9.1 60 87-146 124-190 (1187)
233 PRK13767 ATP-dependent helicas 94.9 0.1 2.2E-06 59.6 9.0 69 89-161 85-178 (876)
234 COG1198 PriA Primosomal protei 94.6 0.13 2.7E-06 56.7 8.6 92 69-161 225-319 (730)
235 smart00491 HELICc2 helicase su 94.5 0.15 3.3E-06 44.5 7.4 42 125-166 32-80 (142)
236 KOG0327 Translation initiation 94.2 0.072 1.6E-06 53.0 5.0 245 88-344 94-370 (397)
237 KOG0701 dsRNA-specific nucleas 94.0 0.036 7.9E-07 65.0 3.0 94 89-182 293-399 (1606)
238 KOG3973 Uncharacterized conser 93.9 0.45 9.7E-06 46.5 9.7 10 471-480 453-462 (465)
239 COG1111 MPH1 ERCC4-like helica 93.8 0.52 1.1E-05 48.9 10.4 69 88-161 58-137 (542)
240 KOG1016 Predicted DNA helicase 93.7 0.25 5.4E-06 53.5 8.1 105 88-192 719-845 (1387)
241 PRK14701 reverse gyrase; Provi 93.6 0.2 4.2E-06 60.3 8.1 60 87-146 121-187 (1638)
242 TIGR01054 rgy reverse gyrase. 93.4 0.18 3.9E-06 59.0 7.3 59 87-145 120-186 (1171)
243 KOG0119 Splicing factor 1/bran 93.3 0.065 1.4E-06 54.7 3.1 42 416-492 262-303 (554)
244 PHA02653 RNA helicase NPH-II; 93.2 0.13 2.7E-06 56.6 5.3 68 88-161 222-297 (675)
245 PF14392 zf-CCHC_4: Zinc knuck 92.9 0.037 8E-07 38.7 0.5 16 477-492 34-49 (49)
246 PF15288 zf-CCHC_6: Zinc knuck 92.5 0.062 1.3E-06 35.4 1.0 16 476-491 3-20 (40)
247 COG1197 Mfd Transcription-repa 92.1 0.58 1.3E-05 53.4 8.7 88 74-161 628-722 (1139)
248 COG5222 Uncharacterized conser 90.7 0.094 2E-06 50.0 0.7 18 474-491 176-193 (427)
249 cd00268 DEADc DEAD-box helicas 89.5 2.1 4.6E-05 39.3 8.8 70 88-161 69-149 (203)
250 PF00270 DEAD: DEAD/DEAH box h 89.2 2.5 5.5E-05 37.3 8.8 69 89-161 45-125 (169)
251 KOG1513 Nuclear helicase MOP-3 88.4 0.72 1.6E-05 50.3 5.2 53 130-182 850-910 (1300)
252 KOG1001 Helicase-like transcri 88.3 0.17 3.7E-06 55.4 0.6 118 72-189 521-643 (674)
253 PRK13766 Hef nuclease; Provisi 87.9 7 0.00015 44.2 13.2 70 87-161 57-137 (773)
254 KOG0107 Alternative splicing f 86.2 0.62 1.3E-05 41.4 2.7 16 477-492 103-118 (195)
255 PRK11664 ATP-dependent RNA hel 85.7 1.5 3.2E-05 49.6 6.2 36 278-315 257-292 (812)
256 TIGR01970 DEAH_box_HrpB ATP-de 85.1 1.3 2.8E-05 50.0 5.3 37 278-316 254-290 (819)
257 PF12683 DUF3798: Protein of u 84.9 6.8 0.00015 37.7 9.2 157 21-218 3-174 (275)
258 PF10593 Z1: Z1 domain; Inter 84.5 7.6 0.00016 37.1 9.5 87 111-202 110-201 (239)
259 KOG0107 Alternative splicing f 82.6 18 0.0004 32.4 10.2 58 285-351 9-67 (195)
260 COG1205 Distinct helicase fami 81.4 11 0.00024 42.9 10.8 103 88-194 115-241 (851)
261 smart00487 DEXDc DEAD-like hel 80.4 3.1 6.8E-05 37.1 5.2 46 5-50 145-190 (201)
262 PF05918 API5: Apoptosis inhib 79.8 0.57 1.2E-05 49.9 0.0 18 196-213 263-280 (556)
263 TIGR00963 secA preprotein tran 77.3 9.9 0.00021 42.2 8.5 61 79-146 89-154 (745)
264 COG4907 Predicted membrane pro 75.0 2.5 5.5E-05 43.2 3.0 43 306-348 490-532 (595)
265 PF13917 zf-CCHC_3: Zinc knuck 73.9 1.7 3.7E-05 29.2 1.0 18 416-433 5-22 (42)
266 PF14617 CMS1: U3-containing 9 72.5 22 0.00049 34.1 8.7 84 89-175 127-233 (252)
267 PRK12898 secA preprotein trans 71.8 14 0.0003 40.6 7.9 53 87-145 143-200 (656)
268 KOG1133 Helicase of the DEAD s 70.7 1.7E+02 0.0037 32.3 15.3 76 88-166 629-720 (821)
269 smart00493 TOPRIM topoisomeras 70.5 12 0.00026 28.1 5.3 59 91-150 2-60 (76)
270 smart00487 DEXDc DEAD-like hel 69.7 37 0.00079 30.0 9.3 85 72-160 35-134 (201)
271 PHA00370 III attachment protei 69.5 23 0.0005 33.5 7.6 7 361-367 75-81 (297)
272 PRK13104 secA preprotein trans 69.5 16 0.00034 41.5 7.8 62 78-146 114-180 (896)
273 COG4907 Predicted membrane pro 69.4 3.8 8.3E-05 41.9 2.8 15 19-33 116-130 (595)
274 COG2519 GCD14 tRNA(1-methylade 68.3 30 0.00064 33.2 8.3 43 69-111 169-211 (256)
275 TIGR00631 uvrb excinuclease AB 67.6 46 0.00099 36.9 10.9 106 69-176 37-174 (655)
276 KOG0389 SNF2 family DNA-depend 67.6 18 0.00039 40.0 7.4 68 81-150 441-512 (941)
277 cd00046 DEXDc DEAD-like helica 67.1 29 0.00062 28.6 7.6 70 73-146 12-88 (144)
278 PRK00254 ski2-like helicase; P 66.2 15 0.00032 41.2 7.0 68 87-161 67-144 (720)
279 PRK12899 secA preprotein trans 66.1 21 0.00045 40.7 7.8 53 88-146 135-192 (970)
280 KOG0314 Predicted E3 ubiquitin 65.8 12 0.00027 38.6 5.7 21 472-492 156-176 (448)
281 COG0514 RecQ Superfamily II DN 64.4 21 0.00046 38.6 7.3 58 88-145 57-115 (590)
282 COG1512 Beta-propeller domains 63.1 9.1 0.0002 37.2 3.9 18 165-182 76-93 (271)
283 cd01523 RHOD_Lact_B Member of 62.4 21 0.00046 28.4 5.6 41 82-122 55-96 (100)
284 KOG0298 DEAD box-containing he 62.4 13 0.00029 43.0 5.6 95 87-185 1220-1315(1394)
285 PRK02362 ski2-like helicase; P 62.4 13 0.00028 41.9 5.6 75 80-161 59-143 (737)
286 cd01524 RHOD_Pyr_redox Member 62.0 19 0.00041 28.1 5.1 41 82-122 45-86 (90)
287 COG4098 comFA Superfamily II D 61.9 99 0.0021 31.1 10.7 133 23-181 91-231 (441)
288 KOG0116 RasGAP SH3 binding pro 61.9 53 0.0012 34.0 9.4 23 300-322 298-320 (419)
289 PLN03134 glycine-rich RNA-bind 61.8 1.1E+02 0.0023 26.6 12.7 59 286-353 34-97 (144)
290 COG1201 Lhr Lhr-like helicases 61.1 19 0.00041 40.5 6.4 68 90-161 75-155 (814)
291 PRK09200 preprotein translocas 59.8 30 0.00066 38.9 7.8 60 79-145 111-176 (790)
292 PRK01172 ski2-like helicase; P 59.5 20 0.00043 39.9 6.4 73 81-160 58-140 (674)
293 PF11496 HDA2-3: Class II hist 59.1 1.1E+02 0.0024 30.2 10.8 123 71-193 94-244 (297)
294 PRK06958 single-stranded DNA-b 58.5 39 0.00085 30.7 6.9 9 286-294 28-36 (182)
295 PF12353 eIF3g: Eukaryotic tra 56.8 5.6 0.00012 34.0 1.2 17 475-492 107-123 (128)
296 KOG2044 5'-3' exonuclease HKE1 56.1 5 0.00011 43.9 0.9 15 477-491 263-277 (931)
297 PRK05298 excinuclease ABC subu 55.9 1E+02 0.0022 34.1 11.1 107 69-177 40-178 (652)
298 PRK05728 DNA polymerase III su 55.7 39 0.00084 29.4 6.3 82 70-164 10-94 (142)
299 TIGR01648 hnRNP-R-Q heterogene 55.5 2.2E+02 0.0047 31.0 13.1 56 287-353 234-290 (578)
300 COG0353 RecR Recombinational D 55.1 23 0.00049 32.4 4.8 64 87-150 77-149 (198)
301 TIGR01659 sex-lethal sex-letha 54.7 2.4E+02 0.0053 28.5 13.8 59 287-354 194-257 (346)
302 KOG0352 ATP-dependent DNA heli 53.9 24 0.00052 36.3 5.2 80 65-145 39-121 (641)
303 PF12689 Acid_PPase: Acid Phos 52.1 49 0.0011 29.7 6.5 122 4-135 44-168 (169)
304 TIGR00696 wecB_tagA_cpsF bacte 51.2 83 0.0018 28.5 7.9 64 75-138 34-101 (177)
305 COG0052 RpsB Ribosomal protein 49.3 47 0.001 31.6 6.1 37 74-110 49-85 (252)
306 PF03808 Glyco_tran_WecB: Glyc 49.2 84 0.0018 28.1 7.7 67 75-141 34-105 (172)
307 PRK12904 preprotein translocas 48.5 63 0.0014 36.6 7.9 61 78-145 113-178 (830)
308 KOG2560 RNA splicing factor - 47.6 4.6 0.0001 41.3 -0.9 15 476-490 114-128 (529)
309 COG4359 Uncharacterized conser 45.9 1.1E+02 0.0025 27.8 7.6 48 2-52 74-123 (220)
310 COG2927 HolC DNA polymerase II 45.8 1.2E+02 0.0025 26.5 7.5 79 77-166 17-97 (144)
311 COG0610 Type I site-specific r 45.8 1.3E+02 0.0029 34.9 10.3 84 125-209 579-667 (962)
312 PRK14086 dnaA chromosomal repl 45.2 46 0.00099 36.3 6.1 22 301-322 523-544 (617)
313 cd06533 Glyco_transf_WecG_TagA 45.1 1.1E+02 0.0024 27.4 7.8 65 75-139 32-101 (171)
314 PRK06646 DNA polymerase III su 44.8 83 0.0018 27.8 6.7 83 69-164 9-93 (154)
315 COG3587 Restriction endonuclea 44.8 41 0.00088 37.7 5.6 71 137-207 483-566 (985)
316 PF13245 AAA_19: Part of AAA d 44.8 50 0.0011 25.2 4.7 51 69-119 18-74 (76)
317 COG1512 Beta-propeller domains 44.4 29 0.00063 33.7 4.0 6 140-145 103-108 (271)
318 COG1204 Superfamily II helicas 44.1 45 0.00098 37.6 6.0 77 77-160 64-151 (766)
319 PF04364 DNA_pol3_chi: DNA pol 44.0 70 0.0015 27.6 6.0 79 75-164 15-95 (137)
320 KOG0105 Alternative splicing f 43.3 92 0.002 28.3 6.6 42 302-348 18-62 (241)
321 KOG2673 Uncharacterized conser 42.2 13 0.00027 38.3 1.2 16 477-492 131-146 (485)
322 PTZ00240 60S ribosomal protein 40.9 2.4E+02 0.0052 28.2 10.0 37 152-189 122-161 (323)
323 PF01751 Toprim: Toprim domain 39.6 21 0.00045 28.7 2.0 61 91-151 1-74 (100)
324 KOG0385 Chromatin remodeling c 38.1 1.2E+02 0.0026 33.9 7.7 57 87-145 216-275 (971)
325 cd01535 4RHOD_Repeat_4 Member 37.8 72 0.0016 27.7 5.2 45 77-121 38-84 (145)
326 KOG0109 RNA-binding protein LA 37.7 17 0.00038 35.1 1.3 20 416-435 161-180 (346)
327 cd01444 GlpE_ST GlpE sulfurtra 37.7 69 0.0015 24.9 4.8 42 80-121 48-91 (96)
328 smart00450 RHOD Rhodanese Homo 37.1 45 0.00097 25.7 3.6 36 87-122 55-92 (100)
329 TIGR02329 propionate_PrpR prop 36.8 3.3E+02 0.0072 29.3 11.0 136 6-145 15-153 (526)
330 PF12614 RRF_GI: Ribosome recy 35.6 1.5E+02 0.0032 25.2 6.4 84 168-267 9-96 (128)
331 PF11019 DUF2608: Protein of u 34.7 3.9E+02 0.0084 25.6 10.1 53 66-118 155-209 (252)
332 cd01518 RHOD_YceA Member of th 34.0 2.1E+02 0.0046 22.5 7.2 37 86-122 59-97 (101)
333 KOG0351 ATP-dependent DNA heli 33.7 79 0.0017 36.4 5.9 57 89-145 305-364 (941)
334 PRK15483 type III restriction- 33.5 1.1E+02 0.0025 35.2 7.1 70 137-206 501-580 (986)
335 KOG3293 Small nuclear ribonucl 33.0 99 0.0021 25.8 4.8 17 336-352 67-83 (134)
336 KOG0349 Putative DEAD-box RNA 32.9 13 0.00028 38.1 -0.3 64 278-343 550-618 (725)
337 PF07652 Flavi_DEAD: Flaviviru 32.6 84 0.0018 27.5 4.6 78 76-161 20-101 (148)
338 cd00188 TOPRIM Topoisomerase-p 32.4 1.3E+02 0.0029 21.9 5.5 60 91-151 2-61 (83)
339 KOG0383 Predicted helicase [Ge 32.0 43 0.00094 37.0 3.4 76 74-149 616-695 (696)
340 COG1922 WecG Teichoic acid bio 31.9 2.2E+02 0.0048 27.4 7.8 69 74-142 93-166 (253)
341 KOG0952 DNA/RNA helicase MER3/ 31.4 1.4E+02 0.003 34.6 7.1 51 88-145 164-219 (1230)
342 cd01526 RHOD_ThiF Member of th 31.1 61 0.0013 26.9 3.6 36 86-121 70-108 (122)
343 cd01533 4RHOD_Repeat_2 Member 31.1 1.1E+02 0.0023 24.8 5.0 35 88-122 66-103 (109)
344 PHA02558 uvsW UvsW helicase; P 31.1 2.1E+02 0.0045 30.6 8.4 78 72-160 140-227 (501)
345 cd01528 RHOD_2 Member of the R 31.0 1.2E+02 0.0026 24.0 5.2 36 87-122 57-94 (101)
346 TIGR03714 secA2 accessory Sec 30.9 1.4E+02 0.0031 33.5 7.2 61 79-146 103-173 (762)
347 KOG0116 RasGAP SH3 binding pro 30.7 72 0.0016 33.1 4.6 13 139-152 122-134 (419)
348 cd01529 4RHOD_Repeats Member o 29.4 88 0.0019 24.5 4.1 36 86-121 54-91 (96)
349 PRK05320 rhodanese superfamily 27.6 1.9E+02 0.0042 27.8 6.8 37 87-123 174-212 (257)
350 PRK00162 glpE thiosulfate sulf 27.1 1.2E+02 0.0027 24.3 4.7 44 78-121 48-93 (108)
351 KOG0119 Splicing factor 1/bran 26.8 31 0.00067 35.9 1.1 16 477-492 264-279 (554)
352 cd01449 TST_Repeat_2 Thiosulfa 26.3 1.3E+02 0.0028 24.5 4.8 44 78-121 66-113 (118)
353 PRK03692 putative UDP-N-acetyl 26.3 3.3E+02 0.0071 26.0 8.0 66 74-139 90-159 (243)
354 PRK13103 secA preprotein trans 26.3 2.6E+02 0.0056 32.2 8.2 65 76-147 112-181 (913)
355 PRK13107 preprotein translocas 26.2 2.2E+02 0.0047 32.7 7.6 63 77-146 113-180 (908)
356 cd01521 RHOD_PspE2 Member of t 25.7 88 0.0019 25.4 3.6 38 85-122 61-101 (110)
357 cd06578 HemD Uroporphyrinogen- 25.6 2.6E+02 0.0057 25.7 7.3 22 89-110 122-143 (239)
358 cd01532 4RHOD_Repeat_1 Member 25.3 1.1E+02 0.0023 24.0 3.8 35 88-122 50-88 (92)
359 cd05568 PTS_IIB_bgl_like PTS_I 25.1 3E+02 0.0065 20.7 7.2 55 90-148 2-57 (85)
360 TIGR00096 probable S-adenosylm 25.1 2.4E+02 0.0051 27.6 6.9 68 90-158 26-93 (276)
361 PF02445 NadA: Quinolinate syn 25.1 6.5E+02 0.014 24.8 9.8 123 87-237 134-273 (296)
362 cd01527 RHOD_YgaP Member of th 25.0 92 0.002 24.5 3.5 36 86-121 52-89 (99)
363 cd01027 TOPRIM_RNase_M5_like T 24.8 1.9E+02 0.0041 22.4 5.0 54 91-148 3-56 (81)
364 cd00158 RHOD Rhodanese Homolog 24.8 1.2E+02 0.0025 22.9 4.0 36 86-121 48-85 (89)
365 cd01520 RHOD_YbbB Member of th 24.7 1.2E+02 0.0027 25.3 4.4 37 86-122 84-122 (128)
366 cd00032 CASc Caspase, interleu 24.1 6.1E+02 0.013 23.9 10.0 83 88-176 9-108 (243)
367 COG5179 TAF1 Transcription ini 23.9 36 0.00077 36.5 1.0 18 474-491 937-956 (968)
368 TIGR00036 dapB dihydrodipicoli 23.2 2.2E+02 0.0048 27.5 6.3 57 89-145 70-126 (266)
369 PF12710 HAD: haloacid dehalog 23.2 4.3E+02 0.0094 23.2 8.1 96 5-103 89-190 (192)
370 cd01534 4RHOD_Repeat_3 Member 23.1 1E+02 0.0022 24.1 3.4 34 88-121 56-90 (95)
371 COG0135 TrpF Phosphoribosylant 22.5 6.3E+02 0.014 23.5 9.1 57 75-133 40-97 (208)
372 cd01448 TST_Repeat_1 Thiosulfa 22.5 1.5E+02 0.0033 24.3 4.5 36 87-122 78-116 (122)
373 smart00115 CASc Caspase, inter 22.3 5.3E+02 0.012 24.4 8.7 82 88-175 8-106 (241)
374 COG0074 SucD Succinyl-CoA synt 22.3 4.9E+02 0.011 25.5 8.2 63 74-137 53-116 (293)
375 PRK06739 pyruvate kinase; Vali 22.2 3.9E+02 0.0084 27.2 7.9 30 123-152 250-279 (352)
376 cd01519 RHOD_HSP67B2 Member of 22.0 1E+02 0.0022 24.5 3.3 35 87-121 65-101 (106)
377 cd01522 RHOD_1 Member of the R 21.7 1.7E+02 0.0037 24.1 4.6 37 86-122 62-100 (117)
378 PLN02160 thiosulfate sulfurtra 21.6 1.6E+02 0.0035 25.1 4.5 37 86-122 79-117 (136)
379 COG0379 NadA Quinolinate synth 21.5 8.2E+02 0.018 24.4 12.4 122 87-236 157-297 (324)
380 COG2217 ZntA Cation transport 21.4 3.5E+02 0.0077 30.3 8.1 52 87-142 552-604 (713)
381 cd02974 AhpF_NTD_N Alkyl hydro 21.3 2.2E+02 0.0048 22.7 4.9 42 1-42 1-44 (94)
382 PF08095 Toxin_25: Hefutoxin f 21.2 8.7 0.00019 21.3 -2.2 13 476-488 3-16 (22)
383 KOG0386 Chromatin remodeling c 21.2 1.3E+02 0.0028 34.7 4.5 69 77-145 433-501 (1157)
384 KOG3070 Predicted RNA-binding 21.1 57 0.0012 31.0 1.7 18 475-492 200-217 (235)
385 PRK06827 phosphoribosylpyropho 20.9 2.5E+02 0.0054 28.9 6.3 59 88-147 264-329 (382)
386 PRK10287 thiosulfate:cyanide s 20.6 2.7E+02 0.0059 22.5 5.5 34 88-121 60-94 (104)
387 cd00133 PTS_IIB PTS_IIB: subun 20.5 1.1E+02 0.0023 22.8 3.0 51 90-148 1-57 (84)
388 KOG3794 CBF1-interacting corep 20.5 44 0.00095 33.7 0.8 15 477-491 127-143 (453)
389 cd05212 NAD_bind_m-THF_DH_Cycl 20.2 5.7E+02 0.012 22.1 8.4 84 76-166 13-103 (140)
390 COG1587 HemD Uroporphyrinogen- 20.1 3.7E+02 0.008 25.5 7.1 36 75-110 109-144 (248)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.2e-52 Score=444.10 Aligned_cols=344 Identities=29% Similarity=0.470 Sum_probs=298.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||+|||.++++.|+..+|...|+++||||+|+.+..++++|+.+|..|.+.. .......+.+.++.+....|.+.|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~--~~~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccC--ccccCCceEEEEEEechhhHHHHHHH
Confidence 7899999999999999999999999999999999999999999998887653 23345667788888877788888888
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||+|+..++.|++.|.. .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88764 457899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHhccCC-c
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-P 238 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~-~ 238 (492)
||||+|.++++|+||+|||||+|+.|.+++|+.+.|...++.|++.++..+++..+|..+++.+.....+...+.... .
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES 397 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999998888887777777665432 3
Q ss_pred cchhhhHHHHHHHHhh-----hCHHHHHHHHHHHcCCCCC------C-----C---Ccc-----------------c--c
Q 011149 239 ESVEFFTPTAQRLIEE-----KGTDALAAALAQLSGFSRP------P-----S---SRS-----------------L--I 280 (492)
Q Consensus 239 ~~~~~f~~~a~~l~~~-----~~~~~l~~al~~~~~~~~~------~-----~---~~~-----------------l--~ 280 (492)
+.++.|.+.+++++++ .+.+.++++|+.+.--..+ + + .+. . .
T Consensus 398 ~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (629)
T PRK11634 398 SDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 (629)
T ss_pred hhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 4577788888888864 6789999999998632111 0 0 000 0 0
Q ss_pred c---CCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 011149 281 N---HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (492)
Q Consensus 281 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~ 354 (492)
. ...+|++++++.++ ++++.|++|+++|++..++...+||+|+|++++ ||||||++.++++++.+..
T Consensus 478 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~----s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 478 RERRDVGDMQLYRIEVGR---DDGVEVRHIVGAIANEGDISSRYIGNIKLFASH----STIELPKGMPGEVLQHFTR 547 (629)
T ss_pred cccccCCCCEEEEEeccc---ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCc----eEEEcChhhHHHHHHHhcc
Confidence 0 12268999999998 899999999999999999999999999999998 8999999999999997654
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-44 Score=362.09 Aligned_cols=206 Identities=45% Similarity=0.725 Sum_probs=190.4
Q ss_pred CCCCChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHH
Q 011149 1 MLAVGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (492)
||||||.++|+.|+.++ ++.+|+|+||||+|.|++.++..||.+|..|++..........++.|....+++..|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 56679999999999999999999999999998875545566788899999999999999999
Q ss_pred HHHHHHc--cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc
Q 011149 80 DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (492)
Q Consensus 80 ~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v 156 (492)
.+|..+. +..++||||+|++.|++|+..|.. .+.+.+|||+++|.+|+.+|+.|++|+..||||||+|+||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998884 456999999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
++|||||+|.++++|+||+|||||++++|.+++|++..+......+.+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877666665443
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-42 Score=314.31 Aligned_cols=213 Identities=35% Similarity=0.603 Sum_probs=198.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc-HHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (492)
||+.||.+++-.|++++|+..|++++|||+|.+|.+..++|+.+|+.|-+. +.+.+.+.|+++++.+..++ |.+.|.
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHhHHH
Confidence 789999999999999999999999999999999999999999999887543 55666778999999987765 999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
+|.+.+. -.+++|||||+..++.|.+.++. .+.|..+||+|+|++|+++++.||+++.+|||+||+.+||||+|.|++
T Consensus 259 dLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 259 DLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 9888774 36899999999999999999996 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
|||||+|.+.+.|+||+||.||.|++|.++-|+...+.+.++.+|+++...+.++++.
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999988877654
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-41 Score=354.81 Aligned_cols=218 Identities=43% Similarity=0.735 Sum_probs=198.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc-HHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (492)
||||||.++|+.|++.+|.++|+++||||||..+..+++.|+++|..|.+.......+...+.|+++.+.... |..+|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888764444447788999999998876 999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.+++... ..++||||+|+..|+.|+..|.. ++.+..|||+|+|++|.++++.|++|+++||||||+++||||||+|++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 9998763 45899999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCce-ecCCCCHH
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVVE 219 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~-~~~~p~~~ 219 (492)
|||||+|.+++.|+||+|||||+|++|.+++|+.+. |...+..+++.+...++ ...+|...
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~ 407 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDE 407 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcch
Confidence 999999999999999999999999999999999986 89999999999877755 44445433
No 5
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=327.85 Aligned_cols=228 Identities=35% Similarity=0.541 Sum_probs=203.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC-CCceEEeecccccccccceEEEEEEcCcccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (492)
+|||||+++|+.|++.+|+.+|++|||||+|+.|+++++-.|+ +|..|+++......+.+.++|-|+.++...++.++.
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY 321 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHH
Confidence 5899999999999999999999999999999999999998887 588999988888888899999899998888888888
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.+|+.+....++||||+|...+..+++.|.. .++|..+||.++|..|..+..+|++.+.-|||||||+|||+|+|+|++
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDW 401 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceE
Confidence 8888876668999999999999999999995 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH-HHHHHHHHHHHH
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE-DVLESSAEQVVA 231 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 231 (492)
||+||+|.++++||||+|||||.|++|.+++++.|.|..++++|+ ..++++.+.|..+ +.++...+.++.
T Consensus 402 VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~li~ 472 (543)
T KOG0342|consen 402 VVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEKLIS 472 (543)
T ss_pred EEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 4455555555432 333344444443
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=319.57 Aligned_cols=213 Identities=36% Similarity=0.591 Sum_probs=199.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
+|||.|.++|+.||+.+|.++|++|||||||+.+.++...-+++|+.|.+. ....+.++++++|+.++...|...|..
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccchhHHH
Confidence 589999999999999999999999999999999999999999999988764 455677889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
||+.. ....+||||+|...++.++-.|.. ++.+..|||+|+|..|...++.|+++...||||||+++||+|||.|++|
T Consensus 294 ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 294 LLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99876 458999999999999999999996 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
||||+|.+..+||||+|||+|+|++|.+|.|++..|.+.+++||..++.+.....++
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 999999999999999999999999999999999999999999999999887655444
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.4e-40 Score=326.06 Aligned_cols=201 Identities=40% Similarity=0.644 Sum_probs=183.0
Q ss_pred CCCCChHHHHHHHHHhCCC---C----------------------CcEEEEeeeCChHHHHHHHHHcCCCceEEeecccc
Q 011149 1 MLAVGFEEDVELILENLPP---K----------------------RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD 55 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~---~----------------------~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~ 55 (492)
|+||||.+|+..||.++|. . +|+++||||||+.+..|++.||++|+.+.+- ..
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig--~~ 485 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG--SA 485 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec--cC
Confidence 8999999999999999983 1 7999999999999999999999999998764 34
Q ss_pred cccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhc
Q 011149 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (492)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~ 134 (492)
....+.++|.++.+...+|...|..+|+.. ...++|||+|+++.|+.|++.|.+ .+.+..|||+-+|++|+.+|+.|+
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH
Confidence 455677888888888888999999988876 457999999999999999999997 899999999999999999999999
Q ss_pred CCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 135 ~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
.+..+||||||+++||||||+|++|||||++.+.++|+||+|||||+|+.|+++.|+++.+...+..|.+
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQ 634 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988554444433
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.9e-38 Score=327.65 Aligned_cols=285 Identities=31% Similarity=0.496 Sum_probs=245.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||++||..+++.|++.+|..+|+++||||+|+.+..+++.++.+|..+.+... .....+.++++.++...|...|..
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~---~~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST---HDLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC---CCCCCeeEEEEEeCcHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999988876432 234557888888888889999988
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||+|++.++.+++.|.. .+.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 88765 457899999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHhccCCcc
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~ 239 (492)
||||+|.++++|+||+|||||+|++|.+++|+.+.|...++.+++.+...+++..+|......
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~----------------- 377 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS----------------- 377 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc-----------------
Confidence 999999999999999999999999999999999999999999999998888877666422100
Q ss_pred chhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCc
Q 011149 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 319 (492)
Q Consensus 240 ~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 319 (492)
.. .....+.++.+..++ ...+.+.++++.+........
T Consensus 378 -------------------------------~~--------~~~~~~~~l~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK11776 378 -------------------------------GV--------PLLPEMVTLCIDGGK---KDKLRPGDILGALTGDAGLDG 415 (460)
T ss_pred -------------------------------cc--------cCCCCeEEEEEeccc---ccCCCccchHHHhhcccCCCh
Confidence 00 012346777877765 456778889999888877788
Q ss_pred CccccEEEeecCccceeEeecCHHHHHHHHhhc
Q 011149 320 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (492)
Q Consensus 320 ~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~ 352 (492)
.++|.|.+.+.+ ++++++...++.++...
T Consensus 416 ~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~ 444 (460)
T PRK11776 416 AQIGKINVTDFH----AYVAVERAVAKKALKKL 444 (460)
T ss_pred hhcCCccccccc----ceeecchhhHHHHHHHh
Confidence 889999998776 79999999888888653
No 9
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-38 Score=312.71 Aligned_cols=273 Identities=29% Similarity=0.423 Sum_probs=219.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||||||.+.|+.|+.++|+.+|++|||||....+.++++..++||..|.+.......++.++.++|+.++..+|+.+|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988766667788999999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
+|..+ ...+.|||+.|.+++..+++.+.+ ++++..|||.|+|..|..++++|-....-||+|||+++||||+|.|+
T Consensus 307 FI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99886 458999999999999999999874 68999999999999999999999998889999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHH-HHHHHHHHHHHHHhcc
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE-DVLESSAEQVVATLNG 235 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~l~~ 235 (492)
+||++|.|.++++||||+|||+|....|.++++++|.| ..++..|++.. ++++.+.+.+.. .-+...++.++..-..
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~~k~~~i~~~l~~ll~~~~e 464 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDPEKLTSIRNKLEALLAKDPE 464 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCHHHhhhHHHHHHHHHhhCHH
Confidence 99999999999999999999999999999999999998 56677776654 666655444211 1122333333322222
Q ss_pred CCccchhhhHHHHHHHHhhhCHHH-----H-HHHHHHHcCCCCCCC
Q 011149 236 VHPESVEFFTPTAQRLIEEKGTDA-----L-AAALAQLSGFSRPPS 275 (492)
Q Consensus 236 ~~~~~~~~f~~~a~~l~~~~~~~~-----l-~~al~~~~~~~~~~~ 275 (492)
+..-....|..++..+....+... + ..|++..+|++-.|+
T Consensus 465 Lk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~~~p~ 510 (758)
T KOG0343|consen 465 LKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLPGTPR 510 (758)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCCCCch
Confidence 211122345555555544333221 1 456666666655444
No 10
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-38 Score=306.10 Aligned_cols=219 Identities=34% Similarity=0.511 Sum_probs=196.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
+|||||..++..||+.+|++++|-|||||+.+++.++++..++||+.|.+.......++..+..+|+.|+...|...|.+
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~ 248 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVH 248 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988755555578889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
+|... ...++|||++|...++..+..|.. ...+..+||.|.+.+|..+++.|++-.-.+|+||||++||||||+|+
T Consensus 249 ~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 249 LLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred HHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 99875 568999999999999999998874 46789999999999999999999998888999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (492)
+||+||+|.++..|+||+|||+|+|+.|.+++|+.+.|..++.-+.-.-...++++..+....
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccch
Confidence 999999999999999999999999999999999999988888777544445555555554443
No 11
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-38 Score=300.91 Aligned_cols=203 Identities=36% Similarity=0.617 Sum_probs=185.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||||||..+|.+||-.+.+++|+++.|||.|+-|.+|+..|+++|..+.+ +.-.-.....+++..+.....+|++++..
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTDSEKLEIVQF 457 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEecccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999987644 22233334567788888888899999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++..+.+..++||||..+..|+.|...|. .++.+..|||+-.|.+|+..++.|++|+++||||||+++||||+|+|+||
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV 537 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHV 537 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhccee
Confidence 99998888999999999999999998887 58999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
+|||+|.+++.|+||+|||||+|++|+++.|++.++......|.+
T Consensus 538 ~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 538 YNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred eccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 999999999999999999999999999999999999877666644
No 12
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-37 Score=286.30 Aligned_cols=210 Identities=30% Similarity=0.540 Sum_probs=199.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||+..|.+-|+.|+..+|+++|++|||||.|-.|+.+..+||++|..|.+. ++.+...+.+||..+.+.+|..-|+.
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeechhhhhhhHHH
Confidence 688899999999999999999999999999999999999999999999885 45677889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
|+..+. -.++|||||+...++.+|..+.+ ++.+..+|+.|.|++|.+++..|++|.++.|||||.+.||||+++|++|
T Consensus 316 LfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 988874 36899999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
||||+|.++++|+||+||.||.|..|.+|.|++-.|+..+..||+.++..++.++
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999999999999999999887665
No 13
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-36 Score=282.87 Aligned_cols=217 Identities=31% Similarity=0.502 Sum_probs=192.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||+-.|-++|+.|++.+|..+|+++|||||.+.+.++..--...+....+.......+.+.+.+.|+.++...|...|..
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 68889999999999999999999999999999888875433333222222233455677888999999999999999999
Q ss_pred HHHHHcc--CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 81 LITVYAK--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 81 ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
+|..+.. ...++||++|..+|+.|+..|+. .+.+..+|+.|+|.+|...+.+|+.+.++|||||||++||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 9988754 57899999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (492)
+|||||+|.++.+|+||+|||+|+|+.|.++.++++.+.+.++.||+..+.++.+.....
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999999999999987755443
No 14
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=298.79 Aligned_cols=202 Identities=35% Similarity=0.576 Sum_probs=182.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc---ccHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TSKRTI 77 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~ 77 (492)
||+.||.++|.+|+..+|+++|++||||||...|++|+...|+.|+.|-+. ++..++..+.+.|+...+ .++..+
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd--~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVD--PNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeC--CccccchhhhHHHheeccccccccHHH
Confidence 899999999999999999999999999999999999999999999988765 344556666666665543 357777
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc
Q 011149 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (492)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v 156 (492)
|..++.... ..++|||+.|++.|..+.-+|-- ++.+.-|||.|+|.+|.+.+++|++.+++||||||+++|||||+.|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 777777653 57999999999999999887764 7899999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHH
Q 011149 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (492)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (492)
..||||.+|.+.+.|+||+|||+|+|+.|.+++|+...++..++.+-+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988766
No 15
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=289.19 Aligned_cols=191 Identities=32% Similarity=0.571 Sum_probs=162.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
|+||||.+||+.|+..+...+|++|||||||..|+.+++..+-.|+.|++-. .....-++.+..-.+..+.|.-.|.+
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGR--AGAAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGR--AGAASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccc--ccccchhHHHHHHHHHhhhhhhhHHH
Confidence 8999999999999999999999999999999999999999999999887641 11222222222222333444444433
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.|+. ...++||||..+.+++.+.++|. +++.++.+||+-.|++|...++.|+.|+-+||||||+++.|+|+|++.||
T Consensus 416 CLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV 493 (610)
T KOG0341|consen 416 CLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV 493 (610)
T ss_pred Hhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhh
Confidence 3332 35689999999999999999987 68999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
||||+|.+++.|+||+|||||.|++|.+.+|+..+.
T Consensus 494 INyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 494 INYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999998754
No 16
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-34 Score=278.07 Aligned_cols=211 Identities=34% Similarity=0.605 Sum_probs=197.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||..||.++|..|+..+|++.|++++|||+|.|+..+.++|+.+|..|.+. ....+.+.++++|+.+....|+..|.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk--k~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK--KDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec--chhhhhhheeeeeeeccccccccHHHH
Confidence 789999999999999999999999999999999999999999999988764 344667889999999988889999988
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
+.+ .-.+++|||||++.+..+...|.. .+.+.++|++|.+.+|+.+++.|+.|..+|||.|+.++||||+.++++|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 877 347899999999999999999975 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
|||++|...+.|+||+||+||.|++|.++.++...+...++.+|+++...+++++..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999999998877543
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.3e-34 Score=303.34 Aligned_cols=206 Identities=34% Similarity=0.579 Sum_probs=181.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC-CCceEEeecccccccccceEEEEEEcCcccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (492)
||++||.+++..|+..+++++|+++||||+|+.+..+++.++. ++..+.+... ......++.+.+..+....|...|.
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHH
Confidence 7899999999999999999999999999999999999999886 4666654321 2233456777777777778888888
Q ss_pred HHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 80 DLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 80 ~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
.++..+. ...++||||+|++.|+.|+..|.. .+.+..+||+|++++|+.++++|++|+++|||||+++++|||||+|+
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 8887764 567999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
+|||||+|.++++|+||+|||||+|++|.+++|+++.+...++.|.+.+.
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877777765543
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.9e-34 Score=296.84 Aligned_cols=210 Identities=39% Similarity=0.611 Sum_probs=187.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||+++|..+++.|+..++...|+++||||+++.+..++.+++.+|..+.+.. .......+.+++..+....+.++|..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR--RNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec--ccccccceeEEEEEcCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998876643 22334567777777777778777777
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||+|+..++.+++.|.. .+.+..+||+|++.+|.+++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 76543 447899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
|||++|.++++|+||+|||||+|..|.+++|+...|...++.+++.+..++++.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999998887766443
No 19
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=288.54 Aligned_cols=200 Identities=42% Similarity=0.666 Sum_probs=176.4
Q ss_pred CCC-CChHHHHHHHHHhCCC----CCcEEEEeeeCChHHHHHHHHHcCC-CceEEeecccccccccceEEEEEEcCcccH
Q 011149 1 MLA-VGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (492)
Q Consensus 1 mL~-~GF~~~l~~Il~~~~~----~~q~ll~SAT~p~~i~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (492)
||| |||.++|++|+.++.. ++|++|||||.|..+..++..|+.+ ...+.+. .......++.+..+.+....|
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~~~~k 315 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVNEMEK 315 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeecchhh
Confidence 899 9999999999998854 7999999999999999999999986 4444432 345567888899999988888
Q ss_pred HHHHHHHHHHHc---cCC-----eEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 75 RTILSDLITVYA---KGG-----KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 75 ~~~l~~ll~~~~---~~~-----~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
...|.++|.... ... +++|||+|++.|.+|+..|.. .+++..+||+.+|.+|.+.++.|++|++.+||||+
T Consensus 316 r~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 316 RSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred HHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 888888876543 233 899999999999999999985 89999999999999999999999999999999999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
+++||||||+|+||||||+|.+..+|+||+|||||+|..|.++.|+........+.|
T Consensus 396 VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred hhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 999999999999999999999999999999999999999999999996555444444
No 20
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-34 Score=271.78 Aligned_cols=215 Identities=31% Similarity=0.496 Sum_probs=191.9
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (492)
.||.++--.|...+|++.|+|+||||....+.+++.+..+++..+.+. .+.....+|.++|+.|.. .+|+++|..|.
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999888775 445567888998888865 47999988866
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
..+ .-.+.||||.|++.|..|+..|.. +..|..|||+|.-++|..+++.||.|..+|||+|+|++||||++.|++|||
T Consensus 326 g~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 326 GLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred hhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 554 347899999999999999999985 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceecCCCCHHHH
Q 011149 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPPVVEDV 221 (492)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (492)
||+|. |.+.|+||+|||||.|++|.++.|+... ....+..|++++..++..+.+...+|+
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99994 7899999999999999999999998765 567788999999988888776554443
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-33 Score=300.40 Aligned_cols=209 Identities=34% Similarity=0.545 Sum_probs=185.4
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
||++||..+|+.|++.+|. .+|+++||||++..+..++..++.+|..+.+.. .......+.++++.+....|...|
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCHHHHHHHH
Confidence 6889999999999999987 789999999999999999999999887665432 223445677777777777788777
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ...++||||+|++.|+.|++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+|+
T Consensus 249 ~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 7777543 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
+|||||+|.++++|+||+||+||.|++|.+++|+.+.+...+..|++.+..+++.
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999999988899998887766543
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-33 Score=293.44 Aligned_cols=212 Identities=34% Similarity=0.549 Sum_probs=187.5
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
|+++||..+++.|+..+|. .+|+++||||+|..+..++..++.+|..+.+.. .......+.+.++......|...|
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~--~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP--EQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC--CCcCCCceeEEEEeCCHHHHHHHH
Confidence 6889999999999999984 577899999999999999999999998877642 233345566666666667788888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ...++||||+|+..|+.++..|.. ++.+..+||+|++++|.+++++|++|+++||||||++++|||+|+|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 8887654 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (492)
+|||||+|.+.++|+||+||+||.|++|.+++|+.+.+...+..+++.+...++...+
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~ 383 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKY 383 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccC
Confidence 9999999999999999999999999999999999999999999999988877654433
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.8e-32 Score=287.36 Aligned_cols=204 Identities=28% Similarity=0.458 Sum_probs=178.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||++||.+++..|+..++ +.|+++||||+|+.+..+++.++.++..+.+.. .......+.+..+.+....|...|..
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~~~k~~~l~~ 358 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVETKQKKQKLFD 358 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccchhHHHHHHH
Confidence 789999999999999986 689999999999999999999999888776542 23344567777777777777777777
Q ss_pred HHHHHcc-CCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 81 LITVYAK-GGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 81 ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
++..... ..++||||+|+..++.++..|.. .+.+..+||+|++++|..++++|++|+++|||||++++||||+|+|+
T Consensus 359 ~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 359 ILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 7765432 35899999999999999999974 68899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
+|||||+|.+.++|+||+|||||.|..|.+++|+++.+...+..|.+.+.
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777777766554
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.4e-32 Score=280.91 Aligned_cols=209 Identities=31% Similarity=0.534 Sum_probs=183.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCCh-HHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-cccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l 78 (492)
||++||..+++.|+..++...|+++||||++. .+..+++.++.+|..+.+.. .......+.++++.+. ...|..+|
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP--SRRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC--CcccccCceEEEEEeCCHHHHHHHH
Confidence 78999999999999999999999999999984 68889999998988877643 2233455667666654 35678888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ...++||||+|++.++.++..|.. .+.+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|+
T Consensus 237 ~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 237 CHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 8777642 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
+|||||+|.+.+.|+||+|||||+|..|.+++|+...+...+..+++++..++..
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999998877665543
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-32 Score=262.49 Aligned_cols=206 Identities=26% Similarity=0.475 Sum_probs=187.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||..||.+|+..|.+.+|+..|.+|||||+.+.|..+.+.++++|+.+.+.... ...+..+.||++.|...+|..++..
T Consensus 182 llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e-l~~~dqL~Qy~v~cse~DKflllya 260 (569)
T KOG0346|consen 182 LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE-LPNPDQLTQYQVKCSEEDKFLLLYA 260 (569)
T ss_pred hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc-CCCcccceEEEEEeccchhHHHHHH
Confidence 678999999999999999999999999999999999999999999998876433 3356889999999999999999988
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--------------
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------------- 145 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------------- 145 (492)
+++.---.+++|||+||.+.+..|...|+. +++.++|.|.||..-|..++++|..|.++||||||
T Consensus 261 llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kg 340 (569)
T KOG0346|consen 261 LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKG 340 (569)
T ss_pred HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccc
Confidence 887654568999999999999999999987 79999999999999999999999999999999999
Q ss_pred ---------------------cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 146 ---------------------VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 146 ---------------------~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
-++||||+.+|..|||||+|.++.+||||+|||+|++++|.++.|+.|.|..-...||.
T Consensus 341 k~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~ 420 (569)
T KOG0346|consen 341 KSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLES 420 (569)
T ss_pred cccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHH
Confidence 24799999999999999999999999999999999999999999999999875555555
Q ss_pred HhC
Q 011149 205 DVG 207 (492)
Q Consensus 205 ~~~ 207 (492)
.+.
T Consensus 421 ~~~ 423 (569)
T KOG0346|consen 421 ILK 423 (569)
T ss_pred HHh
Confidence 443
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=6.9e-31 Score=276.71 Aligned_cols=208 Identities=34% Similarity=0.585 Sum_probs=184.6
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
|++++|..++..|++.++. +.|+++||||++..+..+++.|+.+|..+.+.. .......+.++++.+...++..+|
T Consensus 249 l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEP--ENVASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEecc--CcCCCCcccEEEEEecchhHHHHH
Confidence 4688999999999999975 579999999999999999999999998776643 223344566666666777888888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ...++||||++++.++.+++.|.. .+.+..+||+|++++|.++++.|++|+++|||||+++++|||||+++
T Consensus 327 ~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 327 YNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 8877653 446999999999999999999985 78899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCce
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (492)
+||+|++|.+.++|+||+||+||.|+.|.+++|+...|...+..+++.++.+++
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999887764
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.8e-31 Score=263.02 Aligned_cols=197 Identities=35% Similarity=0.564 Sum_probs=175.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-cccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~ 79 (492)
|.+|||..+|+.|..++.+++|+|+||||++..|+.+++.+|.+|+.+... ........|.|.+..++ ...|+..|.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg--~vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG--EVGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe--ehhccccchhheeeeccCcHHHHHHHH
Confidence 889999999999999999999999999999999999999999999877543 22333455666555544 456888877
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.-|..+...+++|||+..+..+++|+..|. +.+.+..+||+|.|.+|.+++.+|+.+...|||+||+++||+|||++..
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 767666677899999999999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHH
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 199 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~ 199 (492)
|||||+-.+++.|.||+||+||+|.+|++++|+++.+..+.
T Consensus 540 VvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fA 580 (731)
T KOG0339|consen 540 VVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFA 580 (731)
T ss_pred eecccccchhHHHHHHhhhcccccccceeeEEechhhHHHh
Confidence 99999999999999999999999999999999999886543
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-31 Score=264.56 Aligned_cols=206 Identities=31% Similarity=0.491 Sum_probs=176.5
Q ss_pred CCCCChHHHHHHHHHhC-------------CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccc------------
Q 011149 1 MLAVGFEEDVELILENL-------------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD------------ 55 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~-------------~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~------------ 55 (492)
+||+||.++|..|++.+ |+..|.+|+||||.+-|.+++..-++||+.|.+.....
T Consensus 299 lleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev 378 (708)
T KOG0348|consen 299 LLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEV 378 (708)
T ss_pred HHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhc
Confidence 58999999999999986 23479999999999999999999999999987321000
Q ss_pred -----------cccccceEEEEEEcCcccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc----------
Q 011149 56 -----------EKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI---------- 111 (492)
Q Consensus 56 -----------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~---------- 111 (492)
..+++.+.+.|..++..-++-.|..+|... ....++|||+.+.+.++.-+..|...
T Consensus 379 ~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 379 DDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred CCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 123456678888888888877777776554 24568999999999999988887642
Q ss_pred -------------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhc
Q 011149 112 -------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178 (492)
Q Consensus 112 -------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~ 178 (492)
.++.-|||.|+|++|..+++.|+...-.||+||||++||||+|+|.+||+||+|.++++|+||+|||
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 2466799999999999999999998888999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 179 GRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 179 gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
+|+|.+|.+++|+.|.|.++++.|+...
T Consensus 539 ARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred hhccCCCceEEEecccHHHHHHHHHhhc
Confidence 9999999999999999999998887654
No 29
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=4.1e-30 Score=265.68 Aligned_cols=213 Identities=33% Similarity=0.590 Sum_probs=183.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~ 79 (492)
|++.+|...+.++++.++.+.|++++|||+|+++..+...++.+|..+.+.. .......+.++++.+.. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKK--DELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCC--CCcccCCceEEEEecChHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999887765432 22234556666666554 34556666
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.++... ...++||||+|++.++.+++.|.. .+.+..+||+|++++|..++++|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 665543 346899999999999999999985 688999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
||+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.+...++...+.
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 9999999999999999999999999999999999999999999999998887765544
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.9e-30 Score=273.70 Aligned_cols=204 Identities=36% Similarity=0.597 Sum_probs=189.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-cccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~ 79 (492)
|+||||.+++..|++.+++.+|+++||||+|..+..++.+.++.|+.|.+- ....+...+++.+..++ ...|+..|.
T Consensus 527 mfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~e~eKf~kL~ 604 (997)
T KOG0334|consen 527 MFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAIENEKFLKLL 604 (997)
T ss_pred hheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecCchHHHHHHH
Confidence 789999999999999999999999999999999999999999988886554 34556677888888777 778999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.||..+....++||||...+.|+.+...|.+ .+.+..|||+.+|.+|..+++.|+++.+.+||||++++||||++++.+
T Consensus 605 eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 605 ELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred HHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 9998887889999999999999999999986 788999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
|||||+|...+.|+||+|||||+|++|.+++|+++.+..+.-.|.+.+
T Consensus 685 vvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 685 VVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998888888887777
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.5e-31 Score=260.42 Aligned_cols=223 Identities=33% Similarity=0.512 Sum_probs=179.6
Q ss_pred CCCCChHHHHHHHHHhCC-----CCCcEEEEeeeCCh---------------------HHHHHHHHH--cCCCceEEeec
Q 011149 1 MLAVGFEEDVELILENLP-----PKRQSMLFSATMPS---------------------WVKKLSRKY--LDNPLNIDLVG 52 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-----~~~q~ll~SAT~p~---------------------~i~~~~~~~--~~~~~~i~~~~ 52 (492)
|++.|..+++..||..+. ..+|++.||||+.- .|+.+.++. ...|..|++.
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t- 430 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLT- 430 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecC-
Confidence 788999999999999886 46899999999832 122233322 2256667664
Q ss_pred ccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHh
Q 011149 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 131 (492)
Q Consensus 53 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~ 131 (492)
+...+...+..-.+.|+..+|.-.|..+|..| ++++|||||+.+.+..|+-+|.. .+....||+.|.|.+|.+.++
T Consensus 431 -~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 431 -PQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred -cchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHH
Confidence 23344444444555566656655555555544 68999999999999999999986 789999999999999999999
Q ss_pred hhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCce
Q 011149 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 132 ~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (492)
+|++....||||||||+||||||.|+|||||.+|.+.+-|+||+|||+|++..|..++|+.|.|...+.+|.+.+..+.+
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877666
Q ss_pred ecCCCCHHHHHHHHHH
Q 011149 212 FVSPPVVEDVLESSAE 227 (492)
Q Consensus 212 ~~~~p~~~~~~~~~~~ 227 (492)
....|....++....+
T Consensus 588 lpifPv~~~~m~~lke 603 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKE 603 (731)
T ss_pred CCceeccHHHHHHHHH
Confidence 5445655655554444
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=1.6e-28 Score=268.90 Aligned_cols=241 Identities=20% Similarity=0.292 Sum_probs=174.6
Q ss_pred hHHHHHHHHH-------hCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC--------
Q 011149 6 FEEDVELILE-------NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (492)
Q Consensus 6 F~~~l~~Il~-------~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (492)
|..++..+++ ..+.++|+++||||+++..+ ++++++..|..+ +. . .........+..+..+
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~-~-~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VT-E-DGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-EC-C-CCCCcCceEEEEecCCcccccccc
Confidence 5555444443 45678999999999998865 577788777543 22 1 1111122222222221
Q ss_pred --------cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc---------ccceeeecCCCCHHHHHHHHhhh
Q 011149 71 --------ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGF 133 (492)
Q Consensus 71 --------~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~r~~~~~~F 133 (492)
...+..++..+++ ...++||||+|++.|+.++..|.+ ...+..+||++++++|.+++++|
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 1123344444443 467999999999999999998764 24678999999999999999999
Q ss_pred cCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecC--hhhHHHHHHHHHHhCCCce
Q 011149 134 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 134 ~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~--~~e~~~~~~l~~~~~~~~~ 211 (492)
++|++++||||+++++|||||++++||||++|.+.++|+||+|||||.|+.|.+++++. +.|...+..+++.+..+++
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 5677788888888888877
Q ss_pred ecC-CCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhh
Q 011149 212 FVS-PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE 254 (492)
Q Consensus 212 ~~~-~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~ 254 (492)
... .|....++...+..+..++ .+..++.+.|.+...++++.
T Consensus 406 ~~~~~~~n~~il~~hl~~aa~e~-~l~~~~~~~~~~~~~~~~~~ 448 (742)
T TIGR03817 406 ATVFDPDNPYVLGPHLCCAAAEL-PLTEADLELFGPAAAEVLDQ 448 (742)
T ss_pred cceeCCCcHHHHHHHHHHHHhcC-CCChHHHHhhchhHHHHHHH
Confidence 643 3555666666555544443 34444445554444444443
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.4e-29 Score=243.61 Aligned_cols=211 Identities=33% Similarity=0.489 Sum_probs=195.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
+++|||.+++.+|++.+|..+|+++||||+|..+..+++.-+.+|..|.+. -+..+.+.++..+..+...+|...|..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999988864 345667888888888999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++.....++++||||.|+..|+.+...|.. ++.+..++|.|.+..|...+.+|+.++..+||.||+++||+|||-.+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 988776677999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
||||+|.+...|+||+||+.|+|++|.+|.++.+++..++-.|...++..+...
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeec
Confidence 999999999999999999999999999999999999999999988888766543
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.95 E-value=3.5e-28 Score=245.73 Aligned_cols=196 Identities=28% Similarity=0.502 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc--------cHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--------SKR 75 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~--------~k~ 75 (492)
-.|.++|..|+..+|..+|++.||||.|..+..+..+||++|..|..... ......|++|++..+.. .|+
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCCcchHHHHHHHH
Confidence 45999999999999999999999999999999999999999999887532 23345677777765432 367
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
+.|..+++.+ +..++||||+....|+.++..|.. ++.|.++.|.|+|.+|..+++.+|.-.++|||+||+.+||||-+
T Consensus 261 q~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 261 QKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcc
Confidence 7777777766 557899999999999999999995 89999999999999999999999999999999999999999999
Q ss_pred CcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhH-HHHHHH
Q 011149 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR-RTVRSL 202 (492)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~-~~~~~l 202 (492)
+|++|||.|+|.+.++|.||+||+||.|..|.+++|+...+. ..+..+
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999998876443 443333
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=6.1e-27 Score=256.04 Aligned_cols=199 Identities=19% Similarity=0.253 Sum_probs=155.0
Q ss_pred CCCCC--hHHHHHHH--HHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc-HH
Q 011149 1 MLAVG--FEEDVELI--LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KR 75 (492)
Q Consensus 1 mL~~G--F~~~l~~I--l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~ 75 (492)
|++.| |+++...| +....++.|+++||||++..+.+.+.+.+.-...+.+.. .....++. |..++... ..
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf~RpNL~--y~Vv~k~kk~l 667 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SFNRPNLW--YSVVPKTKKCL 667 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---ccCccceE--EEEeccchhHH
Confidence 35566 88887763 455556789999999999998886666665332222221 11123332 22222222 23
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
..|..++.......++||||+|++.|+.+++.|.. ++.+..+||+|++++|..++++|++++++|||||+++++|||+|
T Consensus 668 e~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 668 EDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKP 747 (1195)
T ss_pred HHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCcc
Confidence 44444544333356899999999999999999985 89999999999999999999999999999999999999999999
Q ss_pred CcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
+|++||||++|.+++.|+||+|||||.|..+.|++|+...+...++.+..
T Consensus 748 DVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 748 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988777766654
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.3e-26 Score=243.47 Aligned_cols=196 Identities=23% Similarity=0.365 Sum_probs=152.4
Q ss_pred CCCC--hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccH
Q 011149 2 LAVG--FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (492)
Q Consensus 2 L~~G--F~~~l~~I---l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (492)
++.| |+.+...| ...+ ++.|+++||||+++.+...+.+.+. +|..+... . ...++.+. +.......
T Consensus 140 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~--~r~nl~~~-v~~~~~~~ 212 (470)
T TIGR00614 140 SQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---F--DRPNLYYE-VRRKTPKI 212 (470)
T ss_pred CccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---C--CCCCcEEE-EEeCCccH
Confidence 4444 77776554 3344 5789999999999988766655543 44433221 1 12233222 22222234
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
...+..++....+...+||||+|++.|+.+++.|.. ++.+..+|++|++++|.+++++|++|+++|||||+++++|||+
T Consensus 213 ~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~ 292 (470)
T TIGR00614 213 LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK 292 (470)
T ss_pred HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc
Confidence 444444444333456779999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 154 ~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
|+|++||||++|.+++.|+||+||+||.|.++.|++|+++.+...++.+..
T Consensus 293 p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 293 PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998877777654
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.7e-27 Score=238.94 Aligned_cols=200 Identities=30% Similarity=0.463 Sum_probs=173.1
Q ss_pred ChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEc-CcccHHHHHHHHH
Q 011149 5 GFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLI 82 (492)
Q Consensus 5 GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll 82 (492)
.|.+++..|++.+. ++..+-+||||+|..|+++++..+.++..|.+-. .+ .....|.|..+.+ ....|+.++..++
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~-~~-sa~~~V~QelvF~gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGL-RN-SANETVDQELVFCGSEKGKLLALRQLV 382 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEec-ch-hHhhhhhhhheeeecchhHHHHHHHHH
Confidence 79999999999875 5678889999999999999999998888776532 22 2244555544444 4557888888888
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHH--cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
..- -..++|||+.+.+.|.+|++.|. ..+.+.++||+.++.+|++++++||.|+++|||||++++||||+.+|++||
T Consensus 383 ~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 383 ASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred hcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 764 35799999999999999999994 478999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
|||+|.+..+|+||+||+||+|+.|.+|+||+..+...++.++....
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999888888766543
No 38
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=1.3e-25 Score=240.70 Aligned_cols=181 Identities=18% Similarity=0.286 Sum_probs=140.9
Q ss_pred HHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc----------ccHHH
Q 011149 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA----------TSKRT 76 (492)
Q Consensus 8 ~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----------~~k~~ 76 (492)
+.+..+++.++ ..+|+++||||+|.++..+ ++|+.+|..|.+.. .+...++++|+.... ..+..
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 44556665554 4469999999999988887 57999998887642 233556677664331 12333
Q ss_pred HHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhh-cCCCeEEEEecccccccC
Q 011149 77 ILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATDVAARGL 151 (492)
Q Consensus 77 ~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F-~~g~~~iLVaT~~~~~Gi 151 (492)
++..+..... ..+++||||+++.+++.+++.|.+ .+.+..|||+|++. ++++++| ++++.+||||||++++||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 3333332221 346899999999999999999985 47899999999985 5677787 789999999999999999
Q ss_pred CCCCcCEEEecC---CCC---------ChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 152 DIPNVDLIIHYE---LPN---------DPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 152 di~~v~~VI~~~---~P~---------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|||+|++||+++ .|. +.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999998 565 889999999999999 79999999998774
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=1.7e-25 Score=241.39 Aligned_cols=189 Identities=20% Similarity=0.367 Sum_probs=146.9
Q ss_pred hHHHHHH---HHHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 6 FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 6 F~~~l~~---Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
|+.++.. +...+ ++.|+++||||+++.+...+...+. +|... +.. . ...++.+ .......+...+..
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~--~r~nl~~--~v~~~~~~~~~l~~ 229 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--F--DRPNIRY--TLVEKFKPLDQLMR 229 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--C--CCCccee--eeeeccchHHHHHH
Confidence 6665544 34444 4789999999999887664444443 44322 211 1 1223322 22222234444444
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||+|++.|+.+++.|.. .+.+..+|++|++++|.++++.|++++++|||||+++++|||+|+|++|
T Consensus 230 ~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 230 YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 44432 457899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
|||++|.+.++|+||+||+||.|.++.|++|+++.+...++.+.
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877776664
No 40
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=7.3e-26 Score=248.06 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=168.9
Q ss_pred CCCCChHH-HHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHH----
Q 011149 1 MLAVGFEE-DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR---- 75 (492)
Q Consensus 1 mL~~GF~~-~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~---- 75 (492)
||+..|.- -+.+|++.++++.|+|+||||++... ..+|+.++..|.+.+. ...++++|+......+.
T Consensus 126 ~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 126 SLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred hhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHH
Confidence 35555533 23456677888999999999998753 3568877776665321 12356677665544332
Q ss_pred -HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccccc
Q 011149 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (492)
Q Consensus 76 -~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (492)
..+..++.. ..+++|||++++.+++.+++.|.+ .+.+..|||+|++++|.++++.|++|..+||||||++++|
T Consensus 198 ~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 198 SRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 223333322 357899999999999999999985 4778999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEecCCCC------------------ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 151 LDIPNVDLIIHYELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 151 idi~~v~~VI~~~~P~------------------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
||||+|++|||+++|. |.++|+||+||+||. .+|.||.|++..+...+ .....
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l---~~~~~----- 346 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL---PAQDE----- 346 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh---hcCCC-----
Confidence 9999999999999875 345699999999999 79999999998765332 22211
Q ss_pred cCCCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCC
Q 011149 213 VSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272 (492)
Q Consensus 213 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~~ 272 (492)
.|+....+..++..+......+...| .+++.+..+.+.+|+..|..+..
T Consensus 347 ------PEI~r~~L~~~~L~l~~~g~~~~~~~-----~~l~~P~~~~i~~a~~~L~~lga 395 (819)
T TIGR01970 347 ------PEILQADLSGLALELAQWGAKDPSDL-----RWLDAPPSVALAAARQLLQRLGA 395 (819)
T ss_pred ------cceeccCcHHHHHHHHHcCCCChhhC-----CCCCCcCHHHHHHHHHHHHHCCC
Confidence 12222223333333433332222222 34556666777777766654433
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=6.4e-25 Score=236.93 Aligned_cols=184 Identities=21% Similarity=0.275 Sum_probs=140.8
Q ss_pred CCCChHHHHHHHHHhC--CCC---CcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH
Q 011149 2 LAVGFEEDVELILENL--PPK---RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~--~~~---~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (492)
|+|||.++|+.|++.+ ++. +|+++||||+|..+.++++.++.++..+.+.. .......+.++ +.+....|..
T Consensus 182 Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 182 LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK--KRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc--ccccccceEEE-EecChHHHHH
Confidence 6899999999999975 443 69999999999999999988988887666542 23334455554 3344334443
Q ss_pred HHHH-HHHHH-ccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHH-----HHHhhhcC----CC-------e
Q 011149 77 ILSD-LITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRE-----RTLNGFRQ----GK-------F 138 (492)
Q Consensus 77 ~l~~-ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~-----~~~~~F~~----g~-------~ 138 (492)
.+.. +...+ ....++||||||++.|+.+++.|.+.. ...|||+|++.+|+ +++++|++ ++ .
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~ 337 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK-FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT 337 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC-CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc
Confidence 3222 22222 245789999999999999999998632 28999999999999 88999987 43 6
Q ss_pred EEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCC-eEEEecC
Q 011149 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG-TAILMFT 192 (492)
Q Consensus 139 ~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g-~~i~l~~ 192 (492)
.|||||+++++||||+. ++||++..| .++|+||+||++|.|+.+ ..++++.
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 89999999999999986 889988776 589999999999999753 3355553
No 42
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=1.1e-24 Score=239.30 Aligned_cols=231 Identities=18% Similarity=0.246 Sum_probs=167.3
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH-----HHHHHHHHH
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-----ILSDLITVY 85 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~ 85 (492)
.++++.++++.|+|+||||++.. . ..+|+.++..|.+.+. ...++++|+..+...+.. .+..++..
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~--~-l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~- 210 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDND--R-LQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ- 210 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHH--H-HHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-
Confidence 45677788899999999999875 2 3567877766654322 123667777665544443 23333321
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
..+.+|||++++++++.+++.|.+ .+.+..+||+|++++|+++++.|++|+.+||||||++++|||||+|++||+
T Consensus 211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 357899999999999999999985 467889999999999999999999999999999999999999999999999
Q ss_pred cCCCC------------------ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHH
Q 011149 162 YELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (492)
Q Consensus 162 ~~~P~------------------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~ 223 (492)
+++|. |.++|+||+||+||. .+|.||.|++..+...+ .. -...||+.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l---~~-----------~~~PEI~r 354 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERA---AA-----------QSEPEILH 354 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhC---cc-----------CCCCceec
Confidence 88764 346899999999999 69999999998765321 11 11224444
Q ss_pred HHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
..+..++..+......+...| .+++.+.++.+.+|+..|..+.
T Consensus 355 ~dL~~~~L~l~~~g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~lg 397 (812)
T PRK11664 355 SDLSGLLLELLQWGCHDPAQL-----SWLDQPPAAALAAAKRLLQQLG 397 (812)
T ss_pred cchHHHHHHHHHcCCCCHHhC-----CCCCCCCHHHHHHHHHHHHHCC
Confidence 445555555544433222222 3556667777777777765433
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=7.6e-24 Score=228.90 Aligned_cols=191 Identities=23% Similarity=0.406 Sum_probs=150.9
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHH
Q 011149 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 6 F~~~l~~I---l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (492)
|+.++..| ...+| +.++++||||+++.+...+..++.-+....+... ....++. +.......+...+..++
T Consensus 146 frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~--~~v~~~~~~~~~l~~~l 219 (591)
T TIGR01389 146 FRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNLR--FSVVKKNNKQKFLLDYL 219 (591)
T ss_pred cHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCcE--EEEEeCCCHHHHHHHHH
Confidence 66665554 44454 4569999999999988777767653221112111 1122332 22223345666666666
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||+|++.|+.+++.|.. .+.+..+|++|++++|+.+++.|++|+++|||||+++++|||+|+|++||+
T Consensus 220 ~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~ 298 (591)
T TIGR01389 220 KKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH 298 (591)
T ss_pred Hhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE
Confidence 554 357899999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
|++|.+.+.|+|++||+||.|..+.|++++++.+...++.+.
T Consensus 299 ~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 299 YDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred cCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999999999999999998887766654
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=4.4e-23 Score=234.55 Aligned_cols=253 Identities=23% Similarity=0.350 Sum_probs=167.1
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCccc----------
Q 011149 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATS---------- 73 (492)
Q Consensus 6 F~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---------- 73 (492)
|...|+.|...++.+.|+|+||||+++ .+++++ |+. +++.| +...... ...++.. +......
T Consensus 145 Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g~~pv~I--v~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~ 218 (1490)
T PRK09751 145 LALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGGDRPVTV--VNPPAMR-HPQIRIV-VPVANMDDVSSVASGTG 218 (1490)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcCCCCEEE--ECCCCCc-ccceEEE-EecCchhhccccccccc
Confidence 556778888888888999999999987 456664 554 24433 2211111 1222221 2111100
Q ss_pred -----------HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccc------------------------------
Q 011149 74 -----------KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII------------------------------ 112 (492)
Q Consensus 74 -----------k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~------------------------------ 112 (492)
...+...++..+..+.++||||||++.|+.++..|++.+
T Consensus 219 ~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 219 EDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred cccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 011223445444456899999999999999999887421
Q ss_pred ----ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccC-CCCCeE
Q 011149 113 ----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTA 187 (492)
Q Consensus 113 ----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~-g~~g~~ 187 (492)
.+.++||+|++++|..++++|++|++++||||+++++||||++|++||||+.|.++.+|+||+||+||. +..+.+
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEE
Confidence 156799999999999999999999999999999999999999999999999999999999999999996 333445
Q ss_pred EEecChhhHHHHH---HHHHHhCCCceecCCCCHH-HHHHHHHHHHHHHhccCCccchhhhHHHHHHH--HhhhCHHHHH
Q 011149 188 ILMFTSSQRRTVR---SLERDVGCKFEFVSPPVVE-DVLESSAEQVVATLNGVHPESVEFFTPTAQRL--IEEKGTDALA 261 (492)
Q Consensus 188 i~l~~~~e~~~~~---~l~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l--~~~~~~~~l~ 261 (492)
+++.... ...++ .++..+...++.+.+|... +++...+-.++.. .... .+...+.+... +..++.+.+.
T Consensus 379 li~p~~r-~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~-~~~~---~d~l~~~vrra~pf~~L~~~~f~ 453 (1490)
T PRK09751 379 LFFPRTR-RDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAM-DALQ---VDEWYSRVRRAAPWKDLPRRVFD 453 (1490)
T ss_pred EEEeCcH-HHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhc-CCCC---HHHHHHHhhccCCcccCCHHHHH
Confidence 5443322 22222 3677778888887666443 5665544443332 2222 22222222221 2346677777
Q ss_pred HHHHHHcC
Q 011149 262 AALAQLSG 269 (492)
Q Consensus 262 ~al~~~~~ 269 (492)
+.|-.|.+
T Consensus 454 ~vl~~L~~ 461 (1490)
T PRK09751 454 ATLDMLSG 461 (1490)
T ss_pred HHHHHHhc
Confidence 77777764
No 45
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.1e-23 Score=208.28 Aligned_cols=191 Identities=28% Similarity=0.433 Sum_probs=158.6
Q ss_pred CCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecc--cccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEE
Q 011149 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN--QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVF 94 (492)
Q Consensus 17 ~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~--~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF 94 (492)
+++..+.++||||+...-.++...-+..|....+... ..-.++..+.++++.+....|...+..++... +-.++|+|
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf 435 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCF 435 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEE
Confidence 4456678999999976666666666777765443311 12235667788888888877887888888765 55799999
Q ss_pred eCChHHHHHHHHHHH-c----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChh
Q 011149 95 TQTKRDADEVSLALT-S----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169 (492)
Q Consensus 95 ~~t~~~~~~l~~~l~-~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~ 169 (492)
+++.+.+..++..|. . .+.+..+.|.++...|.+.+++|..|+++||||||+++||||+.+|+.|||||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999999987 2 35677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC
Q 011149 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (492)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 208 (492)
+|+||+|||+|+|+.|.|++++...+.+.+.++.+....
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999888776666655543
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=1.2e-22 Score=225.12 Aligned_cols=191 Identities=18% Similarity=0.283 Sum_probs=148.1
Q ss_pred HHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcc
Q 011149 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK 87 (492)
Q Consensus 8 ~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 87 (492)
....++++.++.+.|+++||||+++....++...+.++..|.... .. ...+++++.... ...+...++..+..
T Consensus 587 v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p--~~--R~~V~t~v~~~~---~~~i~~~i~~el~~ 659 (926)
T TIGR00580 587 VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPP--ED--RLPVRTFVMEYD---PELVREAIRRELLR 659 (926)
T ss_pred hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCC--CC--ccceEEEEEecC---HHHHHHHHHHHHHc
Confidence 345667788888999999999987776666655666766665321 11 123444443322 12222334444556
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~ 164 (492)
..+++||||+++.++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 78999999999999999999986 467999999999999999999999999999999999999999999999999998
Q ss_pred CC-ChhHHHHHhhhcccCCCCCeEEEecChh------hHHHHHHHHHH
Q 011149 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLERD 205 (492)
Q Consensus 165 P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~~ 205 (492)
|. ...+|+||+||+||.++.|.|++++.+. ..+.++.|++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 75 6789999999999999999999998643 34455555443
No 47
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=1.3e-22 Score=227.11 Aligned_cols=239 Identities=18% Similarity=0.339 Sum_probs=164.6
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc---HHH
Q 011149 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRT 76 (492)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~ 76 (492)
||+++|... |..++... ++.|+|+||||++. ..+++.|.+.| .|.+.+.. ..++++|....... +.+
T Consensus 199 sLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d 269 (1294)
T PRK11131 199 SLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERD 269 (1294)
T ss_pred ccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHH
Confidence 688898763 44554433 46899999999975 46666554444 56554221 22455665543221 233
Q ss_pred HHHHHHH---HH--ccCCeEEEEeCChHHHHHHHHHHHc-cc---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 77 ILSDLIT---VY--AKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 77 ~l~~ll~---~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
.+..++. .+ ...+.+|||++++.+++.+++.|.+ .+ .+..+||+|++++|.++++. .+..+||||||++
T Consensus 270 ~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIA 347 (1294)
T PRK11131 270 QLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHH
Confidence 3333332 22 2357899999999999999999985 33 47789999999999999987 4678999999999
Q ss_pred cccCCCCCcCEEEecC---------------CC---CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 148 ARGLDIPNVDLIIHYE---------------LP---NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 148 ~~Gidi~~v~~VI~~~---------------~P---~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
++|||||+|++||+++ +| .|.++|+||+|||||. .+|.||.||+..+...+ ..
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~---~~----- 418 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR---PE----- 418 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh---hc-----
Confidence 9999999999999986 34 4568999999999999 69999999998764322 11
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC
Q 011149 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (492)
Q Consensus 210 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~ 270 (492)
-+..||+...+..++..+......++..| .+++.+.++.+..++..|..+
T Consensus 419 ------~~~PEIlR~~L~~viL~lk~lgl~di~~F-----~fldpP~~~~i~~al~~L~~L 468 (1294)
T PRK11131 419 ------FTDPEILRTNLASVILQMTALGLGDIAAF-----PFVEAPDKRNIQDGVRLLEEL 468 (1294)
T ss_pred ------ccCCccccCCHHHHHHHHHHcCCCCccee-----eCCCCCCHHHHHHHHHHHHHC
Confidence 12234445555555555555544444444 356666777777777666533
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=5.1e-22 Score=221.89 Aligned_cols=251 Identities=19% Similarity=0.270 Sum_probs=153.8
Q ss_pred HHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCC------CceEEeecccccccccceEEEEE-------EcCcccHH
Q 011149 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN------PLNIDLVGNQDEKLAEGIKLYAI-------STTATSKR 75 (492)
Q Consensus 9 ~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~------~~~i~~~~~~~~~~~~~i~~~~~-------~~~~~~k~ 75 (492)
.++.|....+...|+|++|||+++ ...+++ ++.. +..+.++.... ...+..... ........
T Consensus 196 ~L~rL~~l~~~~~q~IglSATl~~-~~~va~-~L~~~~~~~~~r~~~iv~~~~---~k~~~i~v~~p~~~l~~~~~~~~~ 270 (876)
T PRK13767 196 SLERLEELAGGEFVRIGLSATIEP-LEEVAK-FLVGYEDDGEPRDCEIVDARF---VKPFDIKVISPVDDLIHTPAEEIS 270 (876)
T ss_pred HHHHHHHhcCCCCeEEEEecccCC-HHHHHH-HhcCccccCCCCceEEEccCC---CccceEEEeccCccccccccchhH
Confidence 344555555568899999999976 334443 3321 22222221111 011111111 01111111
Q ss_pred -HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 76 -~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
.++..+.+.+....++||||||++.|+.++..|.+. ..+.++||+|++++|..++++|++|+++|||||+++
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChH
Confidence 222223333345679999999999999999999852 468999999999999999999999999999999999
Q ss_pred cccCCCCCcCEEEecCCCCChhHHHHHhhhcccC-CCCCeEEEecCh-hhH-HHHHHHHHHhCCCceecCCCC-HHHHHH
Q 011149 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTS-SQR-RTVRSLERDVGCKFEFVSPPV-VEDVLE 223 (492)
Q Consensus 148 ~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~~~-~e~-~~~~~l~~~~~~~~~~~~~p~-~~~~~~ 223 (492)
++|||+|+|++||+|+.|.++.+|+||+||+||. +.....++++.. .+. +....++......++.+.+|. .-+++.
T Consensus 351 e~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~ 430 (876)
T PRK13767 351 ELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLA 430 (876)
T ss_pred HhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 9999999999999999999999999999999986 433444444433 222 222233444555566655553 344544
Q ss_pred HHHHHHHHHhccCCccchhhhHHHHHH--HHhhhCHHHHHHHHHHHc
Q 011149 224 SSAEQVVATLNGVHPESVEFFTPTAQR--LIEEKGTDALAAALAQLS 268 (492)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~~a~~--l~~~~~~~~l~~al~~~~ 268 (492)
..+..++.. .....+. ..+.... ....++.+.+...|-.|.
T Consensus 431 q~i~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~l~~l~ 473 (876)
T PRK13767 431 QHIVGMAIE-RPWDIEE---AYNIVRRAYPYRDLSDEDFESVLRYLA 473 (876)
T ss_pred HHHHHHHHc-CCCCHHH---HHHHHhccCCcccCCHHHHHHHHHHHh
Confidence 433333222 1122211 1111111 123456677777666665
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.8e-22 Score=208.37 Aligned_cols=192 Identities=26% Similarity=0.394 Sum_probs=149.7
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 6 F~~~l~~I---l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
|+++...| ...+| +.++++++||.++.+.+.+...|. ++..+... ...+++.+...... ..+.+.+ -
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-----fdRpNi~~~v~~~~-~~~~q~~-f 221 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS-----FDRPNLALKVVEKG-EPSDQLA-F 221 (590)
T ss_pred cCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec-----CCCchhhhhhhhcc-cHHHHHH-H
Confidence 76666554 44455 899999999999998887766665 33333221 11233322222221 1222222 2
Q ss_pred HHH-HHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 81 LIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 81 ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
+.+ ........||||.|++.++.+++.|.. ++.+..+|++|+.++|+.+.++|.+++++|+|||.++.+|||.|+|.+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 221 123456789999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHH
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (492)
|||||+|.++++|.|-+||+||.|.+..|++|+++.|....+.+...
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999998777776554
No 50
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.89 E-value=2.2e-22 Score=204.93 Aligned_cols=178 Identities=24% Similarity=0.302 Sum_probs=129.7
Q ss_pred HHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEE--EcCcccHHHHHHHHHHHHc
Q 011149 10 VELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI--STTATSKRTILSDLITVYA 86 (492)
Q Consensus 10 l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~--~~~~~~k~~~l~~ll~~~~ 86 (492)
+..+++.++ .+.|+++||||+|+.+.++++.+...+....+. .........+.+. ......+...+..+++...
T Consensus 144 l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 144 ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLD---LKEERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCC---CccccccccccceeeccccccCHHHHHHHHHHhh
Confidence 555555554 478999999999988877776554332211111 0000001112221 1222345667777777666
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-c--ceeeecCCCCHHHHHH----HHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-I--ASEALHGDISQHQRER----TLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-~--~~~~lhg~~~~~~r~~----~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.+.++||||+|++.|+.+++.|.+. . .+..+||+|++.+|.+ +++.|++++.+|||||+++++||||+ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 6789999999999999999999863 3 4899999999999976 48999999999999999999999995 8899
Q ss_pred EecCCCCChhHHHHHhhhcccCCCC----CeEEEecCh
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKE----GTAILMFTS 193 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~----g~~i~l~~~ 193 (492)
|++..| +++|+||+||+||.|+. +.++++...
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 998776 78999999999998854 356666554
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=3.5e-22 Score=225.86 Aligned_cols=189 Identities=16% Similarity=0.236 Sum_probs=146.3
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCe
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (492)
.++++.++.++|+++||||+++.+..++...+.++..|..... . ...++++...... ......++..+....+
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~--~--r~~v~~~~~~~~~---~~~k~~il~el~r~gq 811 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--R--RLAVKTFVREYDS---LVVREAILREILRGGQ 811 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC--C--CCCceEEEEecCc---HHHHHHHHHHHhcCCe
Confidence 4567888999999999999888888888888888887764321 1 1234444333221 1223344444445689
Q ss_pred EEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC-C
Q 011149 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P-~ 166 (492)
++||||+++.++.+++.|.+ .+.+.++||+|++++|++++++|++|+++|||||+++++|||+|+|++||..+.. .
T Consensus 812 v~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCC
Confidence 99999999999999999986 3578999999999999999999999999999999999999999999999944332 3
Q ss_pred ChhHHHHHhhhcccCCCCCeEEEecChh------hHHHHHHHHHHh
Q 011149 167 DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLERDV 206 (492)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~~~ 206 (492)
+...|+||+||+||.++.|.|++++.+. ....++.|++..
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~ 937 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhc
Confidence 4568999999999999999999997542 345566665543
No 52
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=3.3e-23 Score=189.04 Aligned_cols=171 Identities=27% Similarity=0.564 Sum_probs=143.3
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (492)
...+.|+++|++..|.+.|+++||||++++|+.++++||.+|..|-+. .....+...++++|+......|...|.++|+
T Consensus 201 lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd 279 (387)
T KOG0329|consen 201 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKENEKNRKLNDLLD 279 (387)
T ss_pred HHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhhhhhhhhhhhhh
Confidence 356889999999999999999999999999999999999999988654 3445566778899999999999999999998
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 163 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~ 163 (492)
.+. -.+++||+.+... | + | ..+ ||||++..||+||..|++|+|||
T Consensus 280 ~Le-FNQVvIFvKsv~R-------l-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYd 324 (387)
T KOG0329|consen 280 VLE-FNQVVIFVKSVQR-------L-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYD 324 (387)
T ss_pred hhh-hcceeEeeehhhh-------h-------------h----------h---hhh-hHHhhhhccccCcccceeeeccC
Confidence 874 4799999987654 0 0 2 123 89999999999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCc
Q 011149 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKF 210 (492)
Q Consensus 164 ~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~ 210 (492)
+|.+.++|+||++|+||.|.+|.+|+|++.. +...+..+...+...+
T Consensus 325 mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i 372 (387)
T KOG0329|consen 325 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNI 372 (387)
T ss_pred CCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccH
Confidence 9999999999999999999999999999865 4455555555544433
No 53
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=2.2e-21 Score=217.95 Aligned_cols=240 Identities=17% Similarity=0.293 Sum_probs=166.0
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc------cc
Q 011149 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA------TS 73 (492)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~------~~ 73 (492)
||+++|... ++.|+... ++.|+|+||||++. ..+++.| .+...|.+.+.. ..++.+|..... .+
T Consensus 192 sL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~F-~~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~ 262 (1283)
T TIGR01967 192 SLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRHF-NNAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLD 262 (1283)
T ss_pred hccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHHh-cCCCEEEECCCc-----ccceeEEecccccccchhhh
Confidence 578888765 67776655 47899999999974 4566555 444445553221 123344443321 12
Q ss_pred HHHHHHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-c---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 74 KRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-I---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 74 k~~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
+.+.+..++..+ ...+.+|||++++.+++.+++.|.+ . +.+..|||.|++++|.++++.+. ..+||||||++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIA 340 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHH
Confidence 333333333332 2357899999999999999999985 2 45889999999999999987653 46899999999
Q ss_pred cccCCCCCcCEEEecCCC------------------CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 148 ARGLDIPNVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 148 ~~Gidi~~v~~VI~~~~P------------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
++|||||+|++||+++++ .|.++|+||+||+||.+ +|.||.|++..+...+. ..
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~---~~---- 412 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRP---EF---- 412 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhh---hc----
Confidence 999999999999998853 36689999999999997 99999999987653221 11
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 210 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
+..|++...+..++..+......++..| .+++.+..+.+..++..|..+.
T Consensus 413 -------~~PEIlR~~L~~viL~l~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~LG 462 (1283)
T TIGR01967 413 -------TDPEILRTNLASVILQMLALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEELG 462 (1283)
T ss_pred -------cCcccccccHHHHHHHHHhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHCC
Confidence 1234555555566666655443334344 3566777778877777765443
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.87 E-value=6.4e-21 Score=210.77 Aligned_cols=190 Identities=25% Similarity=0.381 Sum_probs=133.8
Q ss_pred CCCChHHHHHHHHHhC---CCCCcEEEEeeeCChHHHHHHHHHcCC--------CceEEeecccccccccceEEEEEEcC
Q 011149 2 LAVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDN--------PLNIDLVGNQDEKLAEGIKLYAISTT 70 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~---~~~~q~ll~SAT~p~~i~~~~~~~~~~--------~~~i~~~~~~~~~~~~~i~~~~~~~~ 70 (492)
++.++...++.++..+ +++.|+|++|||+|+. .++++ |+.. |+.+...............+..+..
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~- 226 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV- 226 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC-
Confidence 4567777777776554 5789999999999863 34443 4431 1111100000000000000111111
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------------------------------------cc
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IA 113 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------------------------------------~~ 113 (492)
..+...+..+++.+....++||||+|++.|+.++..|... ..
T Consensus 227 -~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 227 -PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred -ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 1223344444554556789999999999999988877531 25
Q ss_pred eeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC-----CCCChhHHHHHhhhcccCCCC
Q 011149 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGKE 184 (492)
Q Consensus 114 ~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~-----~P~~~~~y~qr~GR~gR~g~~ 184 (492)
+.++|++|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ || .|.+..+|+||+|||||.|..
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 778999999999999999999999999999999999999999999997 76 689999999999999999854
Q ss_pred --CeEEEecChhh
Q 011149 185 --GTAILMFTSSQ 195 (492)
Q Consensus 185 --g~~i~l~~~~e 195 (492)
|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 89999987643
No 55
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.3e-21 Score=204.06 Aligned_cols=169 Identities=18% Similarity=0.162 Sum_probs=135.8
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc-cCCeEEEEeCChHH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRD 100 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~ 100 (492)
++..||||.+....++.+.|..++..|.... .......+.++.+...+|...|.+++.... ...++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k----p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR----PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC----CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 5567999999988889998888876654321 111223334555666778888888876642 35789999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC---CcC-----EEEecCCCCChhHH
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~---~v~-----~VI~~~~P~~~~~y 171 (492)
++.++..|.+ ++++..||++++ +|+..+..|+.+...|+||||+++||+||+ +|. |||+|++|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 9999999985 899999999865 445555555555667999999999999999 676 99999999999999
Q ss_pred HHHhhhcccCCCCCeEEEecChhhH
Q 011149 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
+||+|||||.|.+|.+++|++..|.
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999998663
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.86 E-value=1.7e-20 Score=206.86 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=139.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccce-EEEEEEcCcc--cH--H
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTAT--SK--R 75 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i-~~~~~~~~~~--~k--~ 75 (492)
|++.++...++.|+..++...|+|++|||+++ ..++++ |+....... . .........+ .+.++..... .+ .
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-D-WRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-C-CCCCcceeeEecCCeeeccCcchhcchH
Confidence 34567888999999999999999999999986 355654 554322111 0 0000000011 0111111111 11 1
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----------------------------------ccceeeecCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDI 121 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----------------------------------~~~~~~lhg~~ 121 (492)
.....+.+.+..+.++||||+|++.|+.++..|.. ...+.++|++|
T Consensus 226 ~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 226 SWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 11112223334567999999999999887766632 12488999999
Q ss_pred CHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe-------cCCCC-ChhHHHHHhhhcccCC--CCCeEEEec
Q 011149 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMF 191 (492)
Q Consensus 122 ~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~-------~~~P~-~~~~y~qr~GR~gR~g--~~g~~i~l~ 191 (492)
++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|+||+||+||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 55544 5779999999999975 679999998
Q ss_pred ChhhHHHHHHHHHHhCCCcee
Q 011149 192 TSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 192 ~~~e~~~~~~l~~~~~~~~~~ 212 (492)
...+... .+++++..+++.
T Consensus 386 ~~~~~~~--~~~~~~~~~pe~ 404 (720)
T PRK00254 386 TTEEPSK--LMERYIFGKPEK 404 (720)
T ss_pred cCcchHH--HHHHHHhCCchh
Confidence 7654221 234444444443
No 57
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.86 E-value=9.2e-21 Score=209.42 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=138.1
Q ss_pred cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHH-c-ccceeeecCCCCHHHHHHHHhhhcCC--CeEEEEeccccc
Q 011149 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 148 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~-~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~~~~ 148 (492)
.|.+.|.++++.. ...|+||||+++..+..|++.|. . ++.+..+||+|++.+|+++++.|+++ ..+|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 3566666666654 36799999999999999999995 3 78999999999999999999999984 699999999999
Q ss_pred ccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC--CceecCCCCHHHHHHHHH
Q 011149 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSA 226 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~--~~~~~~~p~~~~~~~~~~ 226 (492)
+|+|++.+++|||||+|++++.|+||+||++|.|+++.+.+++...+....+.|.+.+.. .+-...+|+..++.....
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999888777766555556666665554 566678888888888888
Q ss_pred HHHHHHhccC
Q 011149 227 EQVVATLNGV 236 (492)
Q Consensus 227 ~~~~~~l~~~ 236 (492)
+.+...+...
T Consensus 638 ~~l~~~l~~~ 647 (956)
T PRK04914 638 DELIPYLASP 647 (956)
T ss_pred HHHHHHHhCC
Confidence 7777777543
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=2.1e-20 Score=204.05 Aligned_cols=176 Identities=18% Similarity=0.287 Sum_probs=129.2
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCe
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (492)
...+...+...|+++||||+.+....+. +..+.....+...+.. ...+...++ ....+..++..+........+
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~--r~~i~~~~~--~~~~~~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPG--RKPITTVVI--PDSRRDEVYERIREEIAKGRQ 473 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCC--CCCcEEEEe--CcccHHHHHHHHHHHHHcCCc
Confidence 3445555667899999999866554443 2232221111111111 122433333 233344444555555556789
Q ss_pred EEEEeCCh--------HHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 91 TIVFTQTK--------RDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 91 ~iVF~~t~--------~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++|||++. ..++.+++.|.+. +.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++|
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 99999954 4566777777753 579999999999999999999999999999999999999999999999
Q ss_pred EecCCCC-ChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 160 IHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 160 I~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
|+++.|. ....|.||+||+||.+.+|.|++++.
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999997 57888999999999999999999995
No 59
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.85 E-value=4.2e-21 Score=186.77 Aligned_cols=189 Identities=31% Similarity=0.495 Sum_probs=149.6
Q ss_pred CCCCChHHHHHHHHHhCCC------CCcEEEEeeeCC-hHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc-
Q 011149 1 MLAVGFEEDVELILENLPP------KRQSMLFSATMP-SWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT- 72 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~------~~q~ll~SAT~p-~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~- 72 (492)
+|..|+-+.|..+..++|. ..|.+++|||+. -+|+.+.++.|..|..|++.. ...+++.+.+....+...
T Consensus 375 lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg--eD~vpetvHhvv~lv~p~~ 452 (725)
T KOG0349|consen 375 LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG--EDLVPETVHHVVKLVCPSV 452 (725)
T ss_pred hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccc--ccccchhhccceeecCCcc
Confidence 3567888888888888873 479999999985 467788889999999998853 333444444443322211
Q ss_pred c-HHHHH----------------------------HHH---------HHHHccCCeEEEEeCChHHHHHHHHHHHc----
Q 011149 73 S-KRTIL----------------------------SDL---------ITVYAKGGKTIVFTQTKRDADEVSLALTS---- 110 (492)
Q Consensus 73 ~-k~~~l----------------------------~~l---------l~~~~~~~~~iVF~~t~~~~~~l~~~l~~---- 110 (492)
+ ...-| ..| ++.+ .-.++||||.|+.+|+.|...+.+
T Consensus 453 d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~~qkgg~ 531 (725)
T KOG0349|consen 453 DGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMMNQKGGK 531 (725)
T ss_pred CccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHHHHcCCc
Confidence 0 11111 011 1111 235899999999999999999984
Q ss_pred ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 111 ~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
.+.++++||+..+.+|.+.++.|+...++.|||||+++|||||..+-+|||.-+|.+...|+||+||+||+.+-|.+|.+
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred cC
Q 011149 191 FT 192 (492)
Q Consensus 191 ~~ 192 (492)
+.
T Consensus 612 va 613 (725)
T KOG0349|consen 612 VA 613 (725)
T ss_pred ee
Confidence 64
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=9.5e-20 Score=197.64 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=123.0
Q ss_pred CCcEEEEeeeCChHHHHHHHHHcCC--CceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCC
Q 011149 20 KRQSMLFSATMPSWVKKLSRKYLDN--PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 97 (492)
Q Consensus 20 ~~q~ll~SAT~p~~i~~~~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t 97 (492)
..|+++||||+.+....+. ...+ ...++.. .. ....+..+++ ....+..++..+.+.+....+++|||++
T Consensus 386 ~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~--p~--~r~~i~~~~~--~~~~~~~~~~~i~~~l~~g~q~~v~~~~ 457 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALT--VYGDLDTSIIDEL--PP--GRKPITTVLI--KHDEKDIVYEFIEEEIAKGRQAYVVYPL 457 (630)
T ss_pred CCCEEEEeCCCCcHHHHHH--hcCCcceeeeccC--CC--CCCceEEEEe--CcchHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 6899999999755443332 2222 1122111 11 1122333332 2233444555555555567899999987
Q ss_pred h--------HHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCC
Q 011149 98 K--------RDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166 (492)
Q Consensus 98 ~--------~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~ 166 (492)
. ..++.+++.|.+ .+.+..+||+|++++|++++++|++|+.+|||||+++++|||+|++++||+++.|.
T Consensus 458 i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 458 IEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER 537 (630)
T ss_pred ccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc
Confidence 6 456677777764 46789999999999999999999999999999999999999999999999999986
Q ss_pred -ChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 167 -DPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 167 -~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
....|.||+||+||.+++|.|++++.
T Consensus 538 ~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 538 FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 67888999999999999999999983
No 61
>PRK09401 reverse gyrase; Reviewed
Probab=99.81 E-value=2.4e-19 Score=203.48 Aligned_cols=163 Identities=24% Similarity=0.307 Sum_probs=132.3
Q ss_pred CChH-HHHHHHHHhCCC------------------------CCcEEEEeeeCChH-HHHHHHHHcCCCceEEeecccccc
Q 011149 4 VGFE-EDVELILENLPP------------------------KRQSMLFSATMPSW-VKKLSRKYLDNPLNIDLVGNQDEK 57 (492)
Q Consensus 4 ~GF~-~~l~~Il~~~~~------------------------~~q~ll~SAT~p~~-i~~~~~~~~~~~~~i~~~~~~~~~ 57 (492)
|||. ++|+.|+..+|. ..|+++||||+++. +.. .+++++..+.+.. ...
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~--~~~ 301 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS--PVF 301 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC--ccc
Confidence 8995 789999988875 78999999999864 332 2344554455432 233
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHH---HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhh
Q 011149 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (492)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~---~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F 133 (492)
...++.+.++.+. ++...|..++..+ +.++||||+|+.. |+.+++.|.. ++.+..+||+| ++.+++|
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 4567888887665 6777777887765 3589999999877 9999999996 79999999999 2346999
Q ss_pred cCCCeEEEEe----cccccccCCCCC-cCEEEecCCCC------ChhHHHHHhhhccc
Q 011149 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------DPETFVHRSGRTGR 180 (492)
Q Consensus 134 ~~g~~~iLVa----T~~~~~Gidi~~-v~~VI~~~~P~------~~~~y~qr~GR~gR 180 (492)
++|+++|||| ||+++||||+|+ |.+||||++|. ..+.|.||++|+..
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 699999999999 89999999998 77899999999864
No 62
>PRK01172 ski2-like helicase; Provisional
Probab=99.81 E-value=5.9e-19 Score=193.69 Aligned_cols=186 Identities=23% Similarity=0.328 Sum_probs=124.5
Q ss_pred CCChHHHHHHHHH---hCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceE---EEEEEcCcccHHH
Q 011149 3 AVGFEEDVELILE---NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK---LYAISTTATSKRT 76 (492)
Q Consensus 3 ~~GF~~~l~~Il~---~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~---~~~~~~~~~~k~~ 76 (492)
|.++...++.++. .++++.|+|++|||+++ ..++++ |+..+. +... .........+. ..+..........
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~-~~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASL-IKSN-FRPVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCc-cCCC-CCCCCeEEEEEecCeeeeccccccccc
Confidence 4555556666654 45678999999999986 355554 544222 1100 00000000010 0111111111111
Q ss_pred HHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHcc--------------------------cceeeecCCCCHHHHHHH
Q 011149 77 ILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRERT 129 (492)
Q Consensus 77 ~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~--------------------------~~~~~lhg~~~~~~r~~~ 129 (492)
+..++.. ....+++||||+|++.++.++..|... ..+..+|++|++++|..+
T Consensus 225 -~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 225 -INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred -HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 2233332 345689999999999999999888642 136789999999999999
Q ss_pred HhhhcCCCeEEEEecccccccCCCCCcCEEEecC---------CCCChhHHHHHhhhcccCC--CCCeEEEecChh
Q 011149 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~---------~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
++.|++|.++|||||+++++|+|+|+..+|| ++ .|.++.+|.||+|||||.| ..|.+++++...
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 9999999999999999999999999875555 33 3568899999999999998 467788876544
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.2e-18 Score=188.43 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=130.7
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHH-ccCCeEEEEeCChHH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRD 100 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~ 100 (492)
.+..||.|...+-.++.+.|--+ ++.+. ........... -.+.+....|...|...+... ....++||||+|++.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~--v~~IP-t~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNME--VVQIP-TNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCc--EEECC-CCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 46678999866555665555322 22221 11111111111 122345567888777776543 457899999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC---CCcC-----EEEecCCCCChhHH
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETF 171 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi---~~v~-----~VI~~~~P~~~~~y 171 (492)
++.++..|.+ ++++..||+++.+.++..+.++++.+ .|+||||+++||+|| |+|. |||+|++|.+...|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 9999999986 89999999999999999888888876 699999999999999 7998 99999999999999
Q ss_pred HHHhhhcccCCCCCeEEEecChhhH
Q 011149 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
+||+|||||.|.+|.+++|++..|.
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999987653
No 64
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.80 E-value=3.5e-18 Score=185.29 Aligned_cols=138 Identities=28% Similarity=0.422 Sum_probs=118.7
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
.++..+......+.++||||+|++.++.|++.|.. ++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 34444444445577999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred CcCEEEecCC-----CCChhHHHHHhhhcccCCCCCeEEEecCh---------hhHHHHHHHHHHhCCCceecC
Q 011149 155 NVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 155 ~v~~VI~~~~-----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~---------~e~~~~~~l~~~~~~~~~~~~ 214 (492)
++++||++|. |.+..+|+||+|||||. ..|.+++|++. .+...++.++..++.+...++
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999884 78999999999999996 78999999984 466677777777776655443
No 65
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.78 E-value=5.5e-18 Score=182.60 Aligned_cols=128 Identities=25% Similarity=0.432 Sum_probs=112.2
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
.++..+......+.++||||+|++.++.|++.|.+ ++.+..+|+++++.+|.++++.|+.|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 34444444445678999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred CcCEEEecC-----CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 155 NVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 155 ~v~~VI~~~-----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
++++||++| .|.+..+|+||+|||||. ..|.+++++...+....+.|+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999988 799999999999999998 6899999988766555555443
No 66
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.78 E-value=2.3e-17 Score=177.82 Aligned_cols=203 Identities=21% Similarity=0.321 Sum_probs=141.0
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc------cHHHHHHHHHH
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------SKRTILSDLIT 83 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~ 83 (492)
++.+....+ +.|.|.+|||+.+ ...+++..........++..... ...++..+..... ....++..+.+
T Consensus 174 LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~---k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~ 248 (814)
T COG1201 174 LERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDEELWAALYERIAE 248 (814)
T ss_pred HHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccC---CcceEEEEecCCccccccchhHHHHHHHHH
Confidence 445555555 8999999999964 34445433333212222211111 1222222222211 12223344444
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHcc--cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~~--~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
...++..+|||+||+..|+.++..|++. ..+..+||.++.++|..+.++|++|+++.+|||..++.|||+.+|++|||
T Consensus 249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq 328 (814)
T COG1201 249 LVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ 328 (814)
T ss_pred HHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE
Confidence 4445579999999999999999999974 68999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhhccc-CCCCCeEEEecChhhH--HHHHHHHHHhCCCceecCCCC
Q 011149 162 YELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQR--RTVRSLERDVGCKFEFVSPPV 217 (492)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR-~g~~g~~i~l~~~~e~--~~~~~l~~~~~~~~~~~~~p~ 217 (492)
|.-|.++..++||+||+|+ .+.....+++....+. .........+.-+++.+.+|.
T Consensus 329 ~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~ 387 (814)
T COG1201 329 LGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPK 387 (814)
T ss_pred eCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCC
Confidence 9999999999999999997 4555677777665321 222233444555666555554
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.78 E-value=5.6e-18 Score=171.75 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=110.7
Q ss_pred HHHHhCCCCCcEEEEeeeCChHHHHHHHHH--cCCCceEEeecc--cc---------------cccccceEEEEEEcCcc
Q 011149 12 LILENLPPKRQSMLFSATMPSWVKKLSRKY--LDNPLNIDLVGN--QD---------------EKLAEGIKLYAISTTAT 72 (492)
Q Consensus 12 ~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~--~~~~~~i~~~~~--~~---------------~~~~~~i~~~~~~~~~~ 72 (492)
.+++..+...+++++|||+|+++....... +..+.. .+.+. .. ..+...+.+.+.. ...
T Consensus 173 ~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~-~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 250 (357)
T TIGR03158 173 QLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIA-PIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APD 250 (357)
T ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceee-eecCcccccCCChhhhccccccccceeccceEEEEEe-CCc
Confidence 444444456899999999999888777654 333321 11111 00 0011245555544 334
Q ss_pred cHHHHHHHHHHHH------ccCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEe
Q 011149 73 SKRTILSDLITVY------AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (492)
Q Consensus 73 ~k~~~l~~ll~~~------~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (492)
.+...+..+++.. .++.++||||+|++.++.++..|++ .+.+..+||.+++.+|+++. +..||||
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLVa 324 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILLG 324 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEEE
Confidence 4554444433322 2357999999999999999999985 25688899999999987654 6789999
Q ss_pred cccccccCCCCCcCEEEecCCCCChhHHHHHhhhcc
Q 011149 144 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179 (492)
Q Consensus 144 T~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~g 179 (492)
|+++++|||+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 325 Tdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 325 TSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999999987 566 45 899999999999986
No 68
>PRK14701 reverse gyrase; Provisional
Probab=99.78 E-value=1.5e-18 Score=201.09 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=141.9
Q ss_pred CChHHHHHH----HHH----------------------hCCCCCc-EEEEeeeCChHHHHHHHHHcCCCceEEeeccccc
Q 011149 4 VGFEEDVEL----ILE----------------------NLPPKRQ-SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56 (492)
Q Consensus 4 ~GF~~~l~~----Il~----------------------~~~~~~q-~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~ 56 (492)
|||.+++.. |++ .+|...| +++||||+++.- .+ .++++++..+.+. ...
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~~-~~l~~~~l~f~v~--~~~ 301 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-DR-VKLYRELLGFEVG--SGR 301 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-HH-HHHhhcCeEEEec--CCC
Confidence 799999975 543 3455666 567999998631 11 2345666666553 223
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHH---HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhh
Q 011149 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNG 132 (492)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~---~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~ 132 (492)
....++.+.|+.+....+ ..|..+++.+ ...+||||+|++. |+++++.|.. ++.+..+|++ |..++++
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHH
Confidence 455678888877655545 4566677654 4689999999876 5899999985 8999999995 8899999
Q ss_pred hcCCCeEEEEec----ccccccCCCCC-cCEEEecCCCC---ChhHHHHHh-------------hhcccCCCCCeEEEec
Q 011149 133 FRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETFVHRS-------------GRTGRAGKEGTAILMF 191 (492)
Q Consensus 133 F~~g~~~iLVaT----~~~~~Gidi~~-v~~VI~~~~P~---~~~~y~qr~-------------GR~gR~g~~g~~i~l~ 191 (492)
|++|+++||||| ++++||||+|+ |.+|||||+|. +.+.|.|-. ||++|.|....+++.+
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999999999 59999999999 99999999999 888776655 9999998887777666
Q ss_pred ChhhHHHHHHH
Q 011149 192 TSSQRRTVRSL 202 (492)
Q Consensus 192 ~~~e~~~~~~l 202 (492)
...+...++.+
T Consensus 454 ~~~~~~~~~~~ 464 (1638)
T PRK14701 454 FPEDVEFLRSI 464 (1638)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
No 69
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.77 E-value=8.5e-18 Score=184.51 Aligned_cols=195 Identities=21% Similarity=0.321 Sum_probs=154.0
Q ss_pred hHHHHHH---HHHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 6 FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 6 F~~~l~~---Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
|+++-.+ +....| ...+|.++||....|..-+-..|+ ++..+. .....+++.+.+...........+..
T Consensus 404 FRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-----~sfnR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK-----SSFNRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred ccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec-----ccCCCCCceEEEEeccCccchHHHHH
Confidence 5554443 334444 489999999998888775555554 555332 12234555444333332344444444
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.+..+.+....||||.++.+|++++..|.. .+.+..+|++|+..+|+.|.++|..++++|+|||=++.+|||.|+|..|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 555556778999999999999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
|||.+|.+.+.|.|-+||+||.|....|++|+...+...++.+...-
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999887777765544
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.77 E-value=3e-18 Score=171.32 Aligned_cols=121 Identities=33% Similarity=0.565 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-cccee-ee--------cCCCCHHHHHHHHhhhcCCCeE
Q 011149 73 SKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASE-AL--------HGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 73 ~k~~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~l--------hg~~~~~~r~~~~~~F~~g~~~ 139 (492)
.|++.+..+++... .+.++|||++.+++|+.|+..|.+ +..+. .+ ..+|+|.++.+++++|++|+++
T Consensus 348 PKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n 427 (542)
T COG1111 348 PKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN 427 (542)
T ss_pred ccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce
Confidence 46777777776542 356999999999999999999986 33332 22 2479999999999999999999
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
|||||+++++|||||++++||.|++-.|+..++||.|||||. ++|.+++|++..
T Consensus 428 VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 428 VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 999999999999999999999999999999999999999997 899999998875
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.77 E-value=1.3e-17 Score=176.46 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec-cccccc
Q 011149 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 150 (492)
Q Consensus 74 k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT-~~~~~G 150 (492)
+..++..++..+ ..+.++||||++.+.++.|++.|.+ .+.+..+||+|++++|..+++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 444444444333 3457899999999999999999986 7899999999999999999999999999999998 899999
Q ss_pred CCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCC
Q 011149 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 185 (492)
Q Consensus 151 idi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g 185 (492)
+|+|++++||++.+|.+...|+||+||++|.+...
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999987544
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=1.9e-17 Score=177.66 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=128.2
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHHHHHHH-HccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~ 99 (492)
++..||.|...+..++.+.|--+ ++.+. .+.+.....+ -.+......|..++...+.. +....++||||+|++
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~--v~~IP---t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS--VVKIP---TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC--EEEcC---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 46678888766666666555322 22221 1221111111 12334455677776666544 356789999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC---------CcCEEEecCCCCChh
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------NVDLIIHYELPNDPE 169 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~---------~v~~VI~~~~P~~~~ 169 (492)
.++.++..|.+ ++++..||+++.+.++..+.++++.| .|+||||+++||+||+ .+.+||+|++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999985 89999999999999999888888877 6999999999999999 999999999999877
Q ss_pred HHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 170 TFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
. +||+|||||.|.+|.+++|++..|.
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchh
Confidence 7 9999999999999999999988653
No 73
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.1e-17 Score=144.40 Aligned_cols=127 Identities=46% Similarity=0.772 Sum_probs=111.8
Q ss_pred EEEEEEcCcccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEE
Q 011149 63 KLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 63 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (492)
.+++...+ ..|...+..++.... ...++||||++...++.+++.|.+ ...+..+|+.++..+|..+++.|+++...|
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444443 267777777776653 467999999999999999999986 678999999999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
||+|.++++|+|+|.+++||.+++|++...|+|++||++|.|..+.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999988887764
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=1.5e-17 Score=177.40 Aligned_cols=168 Identities=20% Similarity=0.202 Sum_probs=129.9
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHH-HHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILS-DLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~-~ll~~~~~~~~~iVF~~t~~ 99 (492)
.+..||.|...+...+.+.|--+.+. +. .+.+...+.+ -.+......|..++. .+...+..+.++||||+|++
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~vv~--IP---tnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~ 416 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEVVV--VP---TNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVE 416 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCEEE--eC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45678889877666666666433222 21 1111111111 111223345665554 44455567889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC-------cCEEEecCCCCChhHH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN-------VDLIIHYELPNDPETF 171 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~-------v~~VI~~~~P~~~~~y 171 (492)
.++.++..|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+++||+||+. ..|||++++|.+...|
T Consensus 417 ~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~ 494 (745)
T TIGR00963 417 KSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRID 494 (745)
T ss_pred HHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHH
Confidence 99999999996 8999999998 889999999999999999999999999999998 4599999999999999
Q ss_pred HHHhhhcccCCCCCeEEEecChhhH
Q 011149 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
.|+.|||||.|.+|.+.+|++..|.
T Consensus 495 ~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 495 NQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999987653
No 75
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.74 E-value=4.7e-17 Score=185.15 Aligned_cols=160 Identities=19% Similarity=0.297 Sum_probs=118.9
Q ss_pred hCCCCCc--EEEEeee-CChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEE
Q 011149 16 NLPPKRQ--SMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTI 92 (492)
Q Consensus 16 ~~~~~~q--~ll~SAT-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~i 92 (492)
.+|+.+| +++|||| +|..+.. .+++++..+++.. ......++.+.++.+.. +...|..+++.+ ..++|
T Consensus 260 ~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~I 330 (1171)
T TIGR01054 260 AIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGI 330 (1171)
T ss_pred hhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEE
Confidence 4566666 5678999 6766543 3456666565532 23345678887775543 345566677665 36899
Q ss_pred EEeCCh---HHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEe----cccccccCCCCC-cCEEEecC
Q 011149 93 VFTQTK---RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYE 163 (492)
Q Consensus 93 VF~~t~---~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa----T~~~~~Gidi~~-v~~VI~~~ 163 (492)
|||+|+ +.|++|++.|.+ ++.+..+||+|++ +++++|++|+++|||| ||+++||||+|+ |++|||||
T Consensus 331 VFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~ 406 (1171)
T TIGR01054 331 VYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLG 406 (1171)
T ss_pred EEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEEC
Confidence 999999 999999999986 7999999999973 6899999999999999 599999999999 89999999
Q ss_pred CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 164 ~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
+|.. +.+.++..+++.....+..++
T Consensus 407 ~P~~---------------~~~~~~~~~~~~~~~~~~~~~ 431 (1171)
T TIGR01054 407 VPKF---------------KVPLKEALSSPRRLLLLLSIL 431 (1171)
T ss_pred CCCE---------------EEecccccccHHHHHHHHHhh
Confidence 9976 223455556665555555444
No 76
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.71 E-value=1e-16 Score=161.55 Aligned_cols=174 Identities=24% Similarity=0.345 Sum_probs=135.2
Q ss_pred HHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc-------
Q 011149 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA------- 86 (492)
Q Consensus 14 l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~------- 86 (492)
|+++-+..|+|.+|||+.++ ..+++++--+.+..+ ..+.+--.|..+.....+|..++..|.+...
T Consensus 366 Lr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 366 LRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 44555689999999999654 456665543333221 2222222345555557789999988876531
Q ss_pred cCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe---c
Q 011149 87 KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---Y 162 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~---~ 162 (492)
-.+++|||++++..|..|+..|. +++++.++|++|++.+|..+...|.++++.++|+|-+++.|+|+|.-.+|+. .
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 13689999999999999999998 4899999999999999999999999999999999999999999997665441 2
Q ss_pred CCC-CChhHHHHHhhhcccCC--CCCeEEEecChh
Q 011149 163 ELP-NDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 163 ~~P-~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
+.- -++..|.||+||+||.+ ..|++|+++.+-
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 232 48999999999999987 569999998764
No 77
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=7.7e-17 Score=173.40 Aligned_cols=167 Identities=22% Similarity=0.233 Sum_probs=128.2
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHHHHHH-HHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~-~~~~~~~~iVF~~t~~ 99 (492)
++..||.|...+...+.+.|--+ ++.+. .+++.....+ -.+......|...+...+. .+....++||||+|++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~IP---tnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~ 451 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITIP---TNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIE 451 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEcC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 45668888876666665555333 22221 1221111111 1122334567766666654 3456789999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC---CCcC-----EEEecCCCCChhH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPET 170 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi---~~v~-----~VI~~~~P~~~~~ 170 (492)
.++.|+..|.+ ++++..||+++.+.+++.+.++++.|. |+|||++|+||+|| ++|. |||++++|.+...
T Consensus 452 ~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri 529 (796)
T PRK12906 452 SSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRI 529 (796)
T ss_pred HHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHH
Confidence 99999999985 799999999999888888888888776 99999999999999 4899 9999999999999
Q ss_pred HHHHhhhcccCCCCCeEEEecChhh
Q 011149 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
|.|+.|||||.|.+|.+.++++..|
T Consensus 530 ~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 530 DNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHhhhhccCCCCcceEEEEeccc
Confidence 9999999999999999999998765
No 78
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.5e-16 Score=172.70 Aligned_cols=234 Identities=19% Similarity=0.312 Sum_probs=171.3
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-ccc-HHHHHHHHHHHH--
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATS-KRTILSDLITVY-- 85 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~-k~~~l~~ll~~~-- 85 (492)
+..++...+++.++|+||||+..+ ++ .+|+.+...+.+.+.. -.|+.+|.... ... -.+.+...+..+
T Consensus 185 lk~~~~~rr~DLKiIimSATld~~--rf-s~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~ 256 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDAE--RF-SAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLR 256 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCHH--HH-HHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhcc
Confidence 445677778789999999999643 44 4577777777765322 22444553333 223 344455555444
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
...+.+|||.+..++.+.+++.|.+ .+.+..|||.|+.+++.++++.-..+..+|++||++++.+|.||+|.+||
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 2357899999999999999999985 25688999999999999999998888888999999999999999999999
Q ss_pred ecC------------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 011149 161 HYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (492)
Q Consensus 161 ~~~------------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (492)
+-+ .|.+.++..||.||+||.+ +|.||-+|+..+.. . .+.-+..||+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~---~-----------~~~~t~PEIl 401 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL---A-----------FPEFTLPEIL 401 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH---h-----------cccCCChhhh
Confidence 544 2568899999999999985 89999999986542 1 1222346777
Q ss_pred HHHHHHHHHHhccCCcc-chhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 223 ESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 223 ~~~~~~~~~~l~~~~~~-~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
...+..++..+.+.... +...| .+++.++...+.+|+..|..+.
T Consensus 402 rtdLs~~vL~l~~~G~~~d~~~f-----~fld~P~~~~i~~A~~~L~~LG 446 (845)
T COG1643 402 RTDLSGLVLQLKSLGIGQDIAPF-----PFLDPPPEAAIQAALTLLQELG 446 (845)
T ss_pred hcchHHHHHHHHhcCCCCCcccC-----ccCCCCChHHHHHHHHHHHHcC
Confidence 77788888888776552 44443 4566677777777776665433
No 79
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.69 E-value=4.8e-17 Score=127.74 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.2
Q ss_pred HHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCC
Q 011149 107 ALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 107 ~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g 182 (492)
.|+. .+.+..+||++++.+|+.+++.|+++...|||||+++++|||+|++++||++++|+++..|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3553 789999999999999999999999999999999999999999999999999999999999999999999976
No 80
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.69 E-value=3.8e-16 Score=161.05 Aligned_cols=225 Identities=19% Similarity=0.321 Sum_probs=167.8
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHH-HHHHHHHHHH--ccCCeEEEEe
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVY--AKGGKTIVFT 95 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~--~~~~~~iVF~ 95 (492)
++.++|++|||+..+ ....|+.+...+.+.+.. ..|+.+|...+..+-. +.+..+++.+ .+++-+|||.
T Consensus 194 ~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFL 265 (674)
T KOG0922|consen 194 PDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFL 265 (674)
T ss_pred CCceEEEEeeeecHH---HHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEe
Confidence 467999999999533 445677776667664322 3355566665554443 3344444444 3567899999
Q ss_pred CChHHHHHHHHHHHcc---c------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC---
Q 011149 96 QTKRDADEVSLALTSI---I------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE--- 163 (492)
Q Consensus 96 ~t~~~~~~l~~~l~~~---~------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~--- 163 (492)
+..++++.+++.|.+. . .+..+||.|+.+++.++++.-..|..+|++||++++..|.||.|.+||+.+
T Consensus 266 tGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK 345 (674)
T KOG0922|consen 266 TGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVK 345 (674)
T ss_pred CCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceE
Confidence 9999999999999853 1 146799999999999999999999999999999999999999999999543
Q ss_pred ---------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHH
Q 011149 164 ---------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228 (492)
Q Consensus 164 ---------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~ 228 (492)
.|.|.++-.||+||+||.+ +|.|+-+|+..+.. . ++..+..|+....+..
T Consensus 346 ~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~---~-----------~~~~~~PEI~R~~Ls~ 410 (674)
T KOG0922|consen 346 QKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD---K-----------MPLQTVPEIQRVNLSS 410 (674)
T ss_pred EEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh---h-----------cccCCCCceeeechHH
Confidence 3668899999999999986 89999999987742 1 1223344556666667
Q ss_pred HHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 229 VVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 229 ~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
++..|++....++..| ++++.+.++.+.+||..|.-+.
T Consensus 411 ~vL~Lkalgi~d~l~F-----~f~d~P~~~~l~~AL~~L~~lg 448 (674)
T KOG0922|consen 411 AVLQLKALGINDPLRF-----PFIDPPPPEALEEALEELYSLG 448 (674)
T ss_pred HHHHHHhcCCCCcccC-----CCCCCCChHHHHHHHHHHHhcC
Confidence 7777777666665555 5677788888888888886433
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.69 E-value=9.9e-17 Score=156.44 Aligned_cols=179 Identities=23% Similarity=0.361 Sum_probs=138.7
Q ss_pred CCCcEEEEeeeCChHHHHHHH--HHcCCCceEEeecccccccccceEEEEEEc---CcccHHHHHHHHHH-HHcc-----
Q 011149 19 PKRQSMLFSATMPSWVKKLSR--KYLDNPLNIDLVGNQDEKLAEGIKLYAIST---TATSKRTILSDLIT-VYAK----- 87 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~--~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~---~~~~k~~~l~~ll~-~~~~----- 87 (492)
.+...|.++||....|++-+- ..|++|+.|--.+ ....++ +|-.. ..++-+..|.++.. .+.+
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP----~FR~NL--FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP----TFRDNL--FYDNHMKSFITDCLTVLADFSSSNLGKHEKAS 248 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc----chhhhh--hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhh
Confidence 478899999999988877543 3345676542211 111111 11110 01223334444321 2210
Q ss_pred ------CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 88 ------GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 88 ------~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
.+-.||||.|+++|++++-.|.. ++.+.++|.+|...+|.++-+++.++++.|++||....+|+|-|+|.+||
T Consensus 249 ~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 249 QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 23579999999999999999985 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
|+++|.+...|.|-.||+||.|+...|-++|+..+...+..|.
T Consensus 329 HW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 329 HWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred ecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999987777664
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=8.6e-16 Score=164.93 Aligned_cols=118 Identities=24% Similarity=0.342 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCC-CeEEEEeccccccc
Q 011149 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARG 150 (492)
Q Consensus 73 ~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~iLVaT~~~~~G 150 (492)
.|..++..++..+. .+.++||||.+...++.++..|. +..+||++++.+|.+++++|+++ .+++||+|+++.+|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 45566666776553 56799999999999998888773 56799999999999999999875 78999999999999
Q ss_pred CCCCCcCEEEecCCC-CChhHHHHHhhhcccCCCCCeE-------EEecChh
Q 011149 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAGKEGTA-------ILMFTSS 194 (492)
Q Consensus 151 idi~~v~~VI~~~~P-~~~~~y~qr~GR~gR~g~~g~~-------i~l~~~~ 194 (492)
||+|++++||+++.| .+...|+||+||++|.+..+.+ |.|+++.
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 999999999999998 4999999999999998866554 7777764
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.68 E-value=1.5e-15 Score=167.30 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc----cceeeecCCCCHHHH----HHHHhhh-cCCC---eEEE
Q 011149 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVL 141 (492)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~r----~~~~~~F-~~g~---~~iL 141 (492)
...++..+++....+.++||||||++.|+++++.|++. +.+..+|+.+++.+| +++++.| ++++ ..||
T Consensus 546 ~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 546 DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34566667766666789999999999999999999863 468999999999999 4677888 6665 4799
Q ss_pred EecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCC
Q 011149 142 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (492)
Q Consensus 142 VaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (492)
|||+++++|||| ++++||....| .+.|+||+||++|.++
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 58999998887 6799999999999874
No 84
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=4.9e-16 Score=168.31 Aligned_cols=168 Identities=21% Similarity=0.232 Sum_probs=127.1
Q ss_pred EEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHH-ccCCeEEEEeCChHHH
Q 011149 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDA 101 (492)
Q Consensus 23 ~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~ 101 (492)
+-.||.|...+-.++.+-|--+.+. +. ........+..- .+......|..+|...+... ..+.++||||+|++.+
T Consensus 536 LaGMTGTA~te~~Ef~~iY~L~Vv~--IP-TnrP~~R~D~~d-~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~s 611 (1025)
T PRK12900 536 LAGMTGTAETEASEFFEIYKLDVVV--IP-TNKPIVRKDMDD-LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVS 611 (1025)
T ss_pred hcccCCCChhHHHHHHHHhCCcEEE--CC-CCCCcceecCCC-eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHH
Confidence 4457777766666665555332222 21 111111111111 22234456777777766543 4578999999999999
Q ss_pred HHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC---CcC-----EEEecCCCCChhHHH
Q 011149 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETFV 172 (492)
Q Consensus 102 ~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~---~v~-----~VI~~~~P~~~~~y~ 172 (492)
+.|+..|.. ++++.+||+ .+.+|+..+.+|+.+...|+||||+|+||+||+ .|. +||+++.|.+...|.
T Consensus 612 E~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~ 689 (1025)
T PRK12900 612 ETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDR 689 (1025)
T ss_pred HHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHH
Confidence 999999985 899999997 589999999999999999999999999999999 554 459999999999999
Q ss_pred HHhhhcccCCCCCeEEEecChhhH
Q 011149 173 HRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|++|||||.|.+|.+++|++..|.
T Consensus 690 Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 690 QLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHhhhhhcCCCCcceEEEechhHH
Confidence 999999999999999999998663
No 85
>PRK13766 Hef nuclease; Provisional
Probab=99.65 E-value=1e-15 Score=171.08 Aligned_cols=121 Identities=36% Similarity=0.562 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCC--------CCHHHHHHHHhhhcCCCeE
Q 011149 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~--------~~~~~r~~~~~~F~~g~~~ 139 (492)
..|+..|.++|... ..+.++||||++++.|+.|++.|.. .+.+..+||. |++.+|.+++++|++++++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 35777788887664 3567999999999999999999974 7788888876 9999999999999999999
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecCh
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+ ++.+++|+..
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 9999999999999999999999999999999999999999986 4777877764
No 86
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=1.3e-15 Score=155.83 Aligned_cols=243 Identities=18% Similarity=0.291 Sum_probs=177.8
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHH--ccCCeEEEE
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AKGGKTIVF 94 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~~~~~iVF 94 (492)
.++..+|+.||||..+ + ...|+.+...+.+.+. . -.+..+|-..+..+.+++ +..+++.+ .+.+-+|||
T Consensus 408 RpdLKllIsSAT~DAe--k-FS~fFDdapIF~iPGR---R--yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 408 RPDLKLLISSATMDAE--K-FSAFFDDAPIFRIPGR---R--YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred CCcceEEeeccccCHH--H-HHHhccCCcEEeccCc---c--cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 4688999999999543 3 3457777666655432 2 234456666666665544 34444433 345789999
Q ss_pred eCChHHHHHHHHHHHcc----------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC-
Q 011149 95 TQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (492)
Q Consensus 95 ~~t~~~~~~l~~~l~~~----------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~- 163 (492)
..-.++.+...+.|... +-+.++|+.||.+.+.++++.--.|..+|++||++|+..|.|++|.+||+-+
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 99999888877777532 4588999999999999999999999999999999999999999999999433
Q ss_pred -----------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHH
Q 011149 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (492)
Q Consensus 164 -----------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~ 226 (492)
.|.+.++-.||+||+||.| +|.|+-||+...+ .+.||. .. ..++....+
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY--~~eLE~--------~t---~PEIqRtnL 625 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY--EHELEE--------MT---VPEIQRTNL 625 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh--hhhhcc--------CC---Ccceeeccc
Confidence 3668889999999999997 8999999997442 333332 22 234555666
Q ss_pred HHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeE
Q 011149 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 287 (492)
Q Consensus 227 ~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~ 287 (492)
..++..|.++...++..| ++++.+..+.|..+|..|..+.+....-.|+.....|.
T Consensus 626 ~nvVL~LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMa 681 (902)
T KOG0923|consen 626 GNVVLLLKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMA 681 (902)
T ss_pred hhHHHHHHhcCcchhccc-----ccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhh
Confidence 777788888877777777 67888888999999999876665554444443333333
No 87
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.64 E-value=1.9e-15 Score=159.55 Aligned_cols=123 Identities=33% Similarity=0.535 Sum_probs=103.9
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----ccceeeec--------CCCCHHHHHHHHhhhcCC
Q 011149 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALH--------GDISQHQRERTLNGFRQG 136 (492)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lh--------g~~~~~~r~~~~~~F~~g 136 (492)
..|++.+..++..+ .+..++||||+||+.|+.|...|.. .++...+- -+|+|.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 46777777766544 3457999999999999999999873 23333332 379999999999999999
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
+++|||||+++++||||++|++||-||.-.++...+||.|| ||+ +.|.++++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999 998 57889988885443
No 88
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.63 E-value=5.9e-15 Score=161.00 Aligned_cols=173 Identities=23% Similarity=0.369 Sum_probs=123.3
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcC-CCceEEeecccccccccceEEEEEEc------CcccHHHHHHHHHHHHccCCe
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAIST------TATSKRTILSDLITVYAKGGK 90 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~------~~~~k~~~l~~ll~~~~~~~~ 90 (492)
....|++.+|||+|+ ..+++. |++ ++........+..........++... +.......+..++..+..+++
T Consensus 178 ~~~~rivgLSATlpN-~~evA~-wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~q 255 (766)
T COG1204 178 NELIRIVGLSATLPN-AEEVAD-WLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQ 255 (766)
T ss_pred CcceEEEEEeeecCC-HHHHHH-HhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCe
Confidence 345899999999987 455665 444 33311111111111111111122111 111234556666777778899
Q ss_pred EEEEeCChHHHHHHHHHHHcc--------------------------------------cceeeecCCCCHHHHHHHHhh
Q 011149 91 TIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLNG 132 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~r~~~~~~ 132 (492)
+||||++++.+...+..|.+. ..+..+|.+|+.++|..+.+.
T Consensus 256 vLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~ 335 (766)
T COG1204 256 VLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDA 335 (766)
T ss_pred EEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHH
Confidence 999999999999999888731 135678999999999999999
Q ss_pred hcCCCeEEEEecccccccCCCCCcCEEE----ecC-----CCCChhHHHHHhhhcccCC--CCCeEEEecC
Q 011149 133 FRQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 192 (492)
Q Consensus 133 F~~g~~~iLVaT~~~~~Gidi~~v~~VI----~~~-----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~ 192 (492)
|+.|.++|||||+.++.|+|+|.-.+|| -|+ .+.++-+|+|++|||||.| ..|.++++.+
T Consensus 336 Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 336 FRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred HhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 9999999999999999999999877777 466 5678899999999999988 4567777763
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=5.5e-14 Score=146.62 Aligned_cols=177 Identities=18% Similarity=0.293 Sum_probs=131.8
Q ss_pred HHHhCCC-CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeE
Q 011149 13 ILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT 91 (492)
Q Consensus 13 Il~~~~~-~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 91 (492)
.|..-.. .+-+++||||.=+....+. .+.|-. +.+.. ....-...|.. ...+.+.+.+++..+.....++.++
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDld-vS~Id-ElP~GRkpI~T--~~i~~~~~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALT--AFGDLD-VSIID-ELPPGRKPITT--VVIPHERRPEVYERIREEIAKGRQA 476 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHH--Hhcccc-chhhc-cCCCCCCceEE--EEeccccHHHHHHHHHHHHHcCCEE
Confidence 3444444 5789999999744433333 333322 22211 11111123333 3345567788888888888888999
Q ss_pred EEEeCChH--------HHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 92 IVFTQTKR--------DADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 92 iVF~~t~~--------~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
.|.||-.+ .|+++++.|+. .+.+..+||.|+.+++++++++|++|+++|||||.|++.|||+|+.+++|
T Consensus 477 Y~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred EEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 99998654 45667777774 35688999999999999999999999999999999999999999999999
Q ss_pred ecCCC-CChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 161 HYELP-NDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 161 ~~~~P-~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
.++.- .-.+++.|-.||+||......|++++.+..
T Consensus 557 Ie~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 557 IENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 87754 356788999999999999999999998876
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=4.6e-14 Score=148.79 Aligned_cols=95 Identities=26% Similarity=0.455 Sum_probs=78.8
Q ss_pred HHHHHHHHHcc---cceeeecCCCCHHHH--HHHHhhhcCCCeEEEEecccccccCCCCCcCEEE--ecCC----CC---
Q 011149 101 ADEVSLALTSI---IASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 166 (492)
Q Consensus 101 ~~~l~~~l~~~---~~~~~lhg~~~~~~r--~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI--~~~~----P~--- 166 (492)
++.+.+.|.+. .++..+|+++++.++ ++++++|++|+.+|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57788888763 568899999987766 8999999999999999999999999999999885 6664 32
Q ss_pred ---ChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 167 ---DPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 167 ---~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
....|+|++||+||.++.|.+++.....+
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 24678999999999999999887654333
No 91
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.57 E-value=2.2e-13 Score=137.09 Aligned_cols=165 Identities=25% Similarity=0.356 Sum_probs=130.7
Q ss_pred CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChH
Q 011149 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 20 ~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
..|+|.+|||..++-.+... -..++-+-.+...+-+.++ +.....+-.+++..+-.....+.++||-+=|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~-----~~vveQiIRPTGLlDP~ie---vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG-----GNVVEQIIRPTGLLDPEIE---VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc-----CceeEEeecCCCCCCCcee---eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999999877544331 1223222222222333232 333344566777777776777899999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC-----CCCChhHHHH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-----LPNDPETFVH 173 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~-----~P~~~~~y~q 173 (492)
.|+.|.++|.+ ++++..+|+++..-+|.+++..+|.|.++|||.-+.+-+|||+|.|.+|..+| +..|..+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999996 89999999999999999999999999999999999999999999999999877 4578999999
Q ss_pred HhhhcccCCCCCeEEEecCh
Q 011149 174 RSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 174 r~GR~gR~g~~g~~i~l~~~ 193 (492)
-+||++|. -.|.+|++...
T Consensus 538 tIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 538 TIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHhhc-cCCeEEEEchh
Confidence 99999995 47888888654
No 92
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.54 E-value=6.5e-14 Score=134.96 Aligned_cols=188 Identities=22% Similarity=0.323 Sum_probs=145.3
Q ss_pred hHHHHH--HHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011149 6 FEEDVE--LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (492)
Q Consensus 6 F~~~l~--~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (492)
|+.|-. .||+.--++..+|.++||..+.|..-++..+.-...+++.. .-..+++.+.+.. .+....+.+.++.+
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a---~fnr~nl~yev~q-kp~n~dd~~edi~k 309 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA---GFNRPNLKYEVRQ-KPGNEDDCIEDIAK 309 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec---ccCCCCceeEeee-CCCChHHHHHHHHH
Confidence 444433 35555556899999999998888877776665322222221 1123444433333 33344444455544
Q ss_pred HH---ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 84 VY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 84 ~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.+ ..+...||||-++++++.++..|+. ++.+..+|..|.+.++.-+-+.+..|+++|+|||-+...|||-|+|.+|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 44 3456789999999999999999996 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHH-------------------------------------------HhhhcccCCCCCeEEEecChhhH
Q 011149 160 IHYELPNDPETFVH-------------------------------------------RSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 160 I~~~~P~~~~~y~q-------------------------------------------r~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|+..+|.+.+.|.| ..||+||.+.+..||++|.-.+.
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 78999999999999999876554
Q ss_pred H
Q 011149 197 R 197 (492)
Q Consensus 197 ~ 197 (492)
.
T Consensus 470 f 470 (695)
T KOG0353|consen 470 F 470 (695)
T ss_pred H
Confidence 3
No 93
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.54 E-value=1.8e-13 Score=149.42 Aligned_cols=102 Identities=23% Similarity=0.368 Sum_probs=82.6
Q ss_pred HHHHHHHHHHc---ccceeeecCCCCH--HHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE--ecCCCCCh----
Q 011149 100 DADEVSLALTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYELPNDP---- 168 (492)
Q Consensus 100 ~~~~l~~~l~~---~~~~~~lhg~~~~--~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI--~~~~P~~~---- 168 (492)
.++.+++.|.+ ...+..+|+++.+ .++++++++|++|+.+|||+|+++++|+|+|+|++|+ ++|.+.+.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 46677888876 3578899999874 5789999999999999999999999999999999985 55554332
Q ss_pred ------hHHHHHhhhcccCCCCCeEEEecChhhHHHHHH
Q 011149 169 ------ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201 (492)
Q Consensus 169 ------~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~ 201 (492)
..|+|++||+||.++.|.+++.....+...++.
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~ 556 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQA 556 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHH
Confidence 578999999999999999998766554444433
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.54 E-value=4.9e-13 Score=127.89 Aligned_cols=175 Identities=19% Similarity=0.291 Sum_probs=121.8
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH------HHHHHHHH-HccCCe
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT------ILSDLITV-YAKGGK 90 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~------~l~~ll~~-~~~~~~ 90 (492)
.++.-+|.+|||.|+.+++-+.+- +-..+.+. .+.+..+..+..+...-++..++. .|...|+. ...+.+
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp-~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKG--NLRILKLP-ARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhC--CeeEeecc-hhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 456789999999998766544321 22223322 223333333444444444444331 33444433 345679
Q ss_pred EEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe-cCC-C
Q 011149 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-YEL-P 165 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~-~~~-P 165 (492)
++||+++.+..++++..|+.. ..+..+|+. ...|.+.+++||+|+++|||+|.+++||+.+|+|+++|. ..- -
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 999999999999999999754 345778886 567889999999999999999999999999999998664 332 2
Q ss_pred CChhHHHHHhhhcccCC--CCCeEEEecChhhHH
Q 011149 166 NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRR 197 (492)
Q Consensus 166 ~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~ 197 (492)
.+.+.++|.+||+||.- .+|.++.|-......
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 57889999999999954 567877775544433
No 95
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.54 E-value=5.1e-14 Score=144.49 Aligned_cols=225 Identities=19% Similarity=0.305 Sum_probs=161.0
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH-HHHHHHHHH--ccCCeEEEEe
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGGKTIVFT 95 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~~~~~~iVF~ 95 (492)
.+.++|.+||||. .++++. |+.+...+.+.+.. -.++..|...+-++..+ ++.+.+..+ ...+.+|||.
T Consensus 499 rdlKliVtSATm~--a~kf~n-fFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 499 RDLKLIVTSATMD--AQKFSN-FFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred ccceEEEeecccc--HHHHHH-HhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 4789999999994 455554 55555555553321 22444555555555443 334444333 2346899999
Q ss_pred CChHHHHHHHHHHHc-----------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC-
Q 011149 96 QTKRDADEVSLALTS-----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (492)
Q Consensus 96 ~t~~~~~~l~~~l~~-----------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~- 163 (492)
+..+.++..+..+.. .+.+..+++.||+.-+.++++.-..+..+++|||++|+..|.||++.+||..+
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 988877766655542 25688999999999999999999999999999999999999999999999544
Q ss_pred -----------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHH
Q 011149 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (492)
Q Consensus 164 -----------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~ 226 (492)
.|.+.+.-.||+||+||.+ +|.||-+|+.... .+ .+...+..|++...+
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay--~~-----------eml~stvPEIqRTNl 716 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY--KN-----------EMLPSTVPEIQRTNL 716 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH--Hh-----------hcccCCCchhhhcch
Confidence 3678888899999999986 8999999987432 11 112234456777777
Q ss_pred HHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC
Q 011149 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (492)
Q Consensus 227 ~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~ 270 (492)
..++..|.++..+++..| ++++.+..+.+..++..|.-+
T Consensus 717 ~nvVLlLkslgV~dll~F-----dFmD~Pped~~~~sly~Lw~L 755 (1042)
T KOG0924|consen 717 SNVVLLLKSLGVDDLLKF-----DFMDPPPEDNLLNSLYQLWTL 755 (1042)
T ss_pred hhHHHHHHhcChhhhhCC-----CcCCCCHHHHHHHHHHHHHHh
Confidence 778888887776665555 456666677788888777533
No 96
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.53 E-value=2.4e-14 Score=112.80 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.2
Q ss_pred HHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccC
Q 011149 103 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (492)
Q Consensus 103 ~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (492)
.+++.|.. .+.+..+||++++++|..+++.|+++...|||+|+++++|+|+|++++||.+++|++...|+|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45566664 68899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011149 182 G 182 (492)
Q Consensus 182 g 182 (492)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 97
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.50 E-value=6.5e-13 Score=144.27 Aligned_cols=245 Identities=19% Similarity=0.258 Sum_probs=164.9
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeeccccccc--------------ccceEEEE---
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL--------------AEGIKLYA--- 66 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~--------------~~~i~~~~--- 66 (492)
..|.--+.+.+-...++.++||||||+.. ++.+.|+....++++.+...... .....++.
T Consensus 303 ~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~ 379 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPE 379 (924)
T ss_pred cccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccc
Confidence 33443333333334478999999999973 35556777766665543221100 00001110
Q ss_pred --------E-EcCcccHHHHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc--------ccceeeecCCCCHHHH
Q 011149 67 --------I-STTATSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQR 126 (492)
Q Consensus 67 --------~-~~~~~~k~~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~r 126 (492)
+ ....+...+++..++..+. ..+.+|||.+...++..+.+.|.. .+-+..+|+.|+..++
T Consensus 380 ~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ 459 (924)
T KOG0920|consen 380 RSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQ 459 (924)
T ss_pred cCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHH
Confidence 0 0011234566666666553 356899999999999999999963 1457889999999999
Q ss_pred HHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe--------cCCCC----------ChhHHHHHhhhcccCCCCCeEE
Q 011149 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH--------YELPN----------DPETFVHRSGRTGRAGKEGTAI 188 (492)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~--------~~~P~----------~~~~y~qr~GR~gR~g~~g~~i 188 (492)
+.+++.--.|..+||+||++++..|.|++|-+||+ ||+-. +...-.||.||+||. .+|.||
T Consensus 460 ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy 538 (924)
T KOG0920|consen 460 QAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICY 538 (924)
T ss_pred HHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeE
Confidence 99999999999999999999999999999999994 44432 445569999999998 689999
Q ss_pred EecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011149 189 LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (492)
Q Consensus 189 ~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~ 268 (492)
.+|+......+. ..-...|++...++++...++-+...... +...++++.+.++++..|+..+.
T Consensus 539 ~L~~~~~~~~~~-------------~~~q~PEilR~pL~~l~L~iK~l~~~~~~---~fLskaldpP~~~~v~~a~~~L~ 602 (924)
T KOG0920|consen 539 HLYTRSRYEKLM-------------LAYQLPEILRTPLEELCLHIKVLEQGSIK---AFLSKALDPPPADAVDLAIERLK 602 (924)
T ss_pred Eeechhhhhhcc-------------cccCChHHHhChHHHhhheeeeccCCCHH---HHHHHhcCCCChHHHHHHHHHHH
Confidence 999875542211 00123466666666666666655444444 33456677777787777777664
No 98
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.50 E-value=4.3e-13 Score=148.48 Aligned_cols=194 Identities=20% Similarity=0.336 Sum_probs=141.4
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC---------cccHHHHHHH
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---------ATSKRTILSD 80 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ 80 (492)
|..++...+.+.|+|+.|||+.+. .++++.+......+.+. ....+....++....+ ..++...+..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~ 297 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRELAESIRRSALAELAT 297 (851)
T ss_pred HHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHH
Confidence 444555556789999999999665 44556666654444332 2223333444444444 1244444555
Q ss_pred HHHHH-ccCCeEEEEeCChHHHHHHHHHHH-----cc----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccccc
Q 011149 81 LITVY-AKGGKTIVFTQTKRDADEVSLALT-----SI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (492)
Q Consensus 81 ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-----~~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (492)
++..+ ..+.++|+|+.++..++.++.... .. ..+..++++|...+|.+++..|+.|++.++|+|++++.|
T Consensus 298 ~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelg 377 (851)
T COG1205 298 LAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELG 377 (851)
T ss_pred HHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhc
Confidence 54433 456799999999999999973332 22 358889999999999999999999999999999999999
Q ss_pred CCCCCcCEEEecCCCC-ChhHHHHHhhhcccCCCCCeEEEecCh--hhHHHHHHHHHHhC
Q 011149 151 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTS--SQRRTVRSLERDVG 207 (492)
Q Consensus 151 idi~~v~~VI~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~--~e~~~~~~l~~~~~ 207 (492)
|||.+++.||++..|. +..+|+||+||+||.++....++++.. -+..++...+....
T Consensus 378 idiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 378 IDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred eeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999 899999999999999877766666552 34555555555554
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.49 E-value=2.6e-13 Score=144.86 Aligned_cols=118 Identities=29% Similarity=0.476 Sum_probs=99.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc---------------------------------------cceeeecCCCCHHHHH
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI---------------------------------------IASEALHGDISQHQRE 127 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~---------------------------------------~~~~~lhg~~~~~~r~ 127 (492)
++.++||||++++.|+.++..+... +.++++|.+++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 3457999999999999988665421 2477889999999999
Q ss_pred HHHhhhcCCCeEEEEecccccccCCCCCcCEEEec---CC-CCChhHHHHHhhhcccCC--CCCeEEEecChhhHHHHHH
Q 011149 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY---EL-PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 201 (492)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~---~~-P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~~ 201 (492)
.+...|++|.+.|++||+.++.|+++|...++|-. .. +.+.-.|.||+|||||+| ..|.+++++.+.+...+..
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 99999999999999999999999999999988842 22 357889999999999998 5689999999998766665
Q ss_pred HHH
Q 011149 202 LER 204 (492)
Q Consensus 202 l~~ 204 (492)
+.+
T Consensus 619 lv~ 621 (1008)
T KOG0950|consen 619 LVN 621 (1008)
T ss_pred HHh
Confidence 533
No 100
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.46 E-value=2.3e-12 Score=128.10 Aligned_cols=228 Identities=18% Similarity=0.326 Sum_probs=166.6
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHH--cc
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AK 87 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~ 87 (492)
++++..-| +.++|.||||+-. ...+.|+.++..+.+.+ ...++.+|...+..+.++. +..+++.+ ..
T Consensus 183 k~v~~~rp-dLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~ee 252 (699)
T KOG0925|consen 183 KEVVRNRP-DLKLVVMSATLDA---EKFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCEE 252 (699)
T ss_pred HHHHhhCC-CceEEEeecccch---HHHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhccC
Confidence 34455554 8999999999843 23456888888777632 2334556666666565554 44445544 34
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc----------cceeeecCCCCHHHHHHHHhhhcC---C--CeEEEEecccccccCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQ---G--KFTVLVATDVAARGLD 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~----------~~~~~lhg~~~~~~r~~~~~~F~~---g--~~~iLVaT~~~~~Gid 152 (492)
++.+|||....++++..++.+... +.|..|| ++++..+++.... + ..+|+|+|++++..+.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslt 328 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLT 328 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeee
Confidence 678999999999999998888731 5688888 5555666555432 1 3579999999999999
Q ss_pred CCCcCEEEecC------------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 153 IPNVDLIIHYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 153 i~~v~~VI~~~------------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
|+.|.+||+-+ -|.+..+-.||.||+||. ++|.|+.||+.+-. .. ++.
T Consensus 329 idgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~----------~~---em~ 394 (699)
T KOG0925|consen 329 IDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF----------EK---EMQ 394 (699)
T ss_pred eccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh----------hh---cCC
Confidence 99999999543 277889999999999997 69999999987432 11 123
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
..+..++++..+..++..|+.+..+++..| ++++.+.++.|+.||-.+..+.
T Consensus 395 ~~typeilrsNL~s~VL~LKklgI~dlvhf-----dfmDpPAPEtLMrALE~LnYLa 446 (699)
T KOG0925|consen 395 PQTYPEILRSNLSSTVLQLKKLGIDDLVHF-----DFMDPPAPETLMRALEVLNYLA 446 (699)
T ss_pred CCCcHHHHHHhhHHHHHHHHhcCcccccCC-----cCCCCCChHHHHHHHHHhhhhh
Confidence 345678999999999999998887777776 6778888999999888876443
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.45 E-value=7.9e-13 Score=145.68 Aligned_cols=172 Identities=22% Similarity=0.237 Sum_probs=120.7
Q ss_pred CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccH--HHHHHHHHHHHccCCeEEEEeCC
Q 011149 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK--RTILSDLITVYAKGGKTIVFTQT 97 (492)
Q Consensus 20 ~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k--~~~l~~ll~~~~~~~~~iVF~~t 97 (492)
+..+|++|||+|+.+.+..+.++.+...+.......................... ...+..+........+++|.|||
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NT 449 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNT 449 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEec
Confidence 6899999999999999988888776554432211000000000001101111111 12334444455567899999999
Q ss_pred hHHHHHHHHHHHccc-ceeeecCCCCHHHHHHHHhhhc----CCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHH
Q 011149 98 KRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172 (492)
Q Consensus 98 ~~~~~~l~~~l~~~~-~~~~lhg~~~~~~r~~~~~~F~----~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~ 172 (492)
+..|.+++..|+... ++..+|+.+...+|.+.++.++ .....|+|||+|++.|+|+. .+++|-= +..+++++
T Consensus 450 V~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLI 526 (733)
T COG1203 450 VDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLI 526 (733)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHH
Confidence 999999999999744 4999999999999998888654 45778999999999999995 7766642 45577999
Q ss_pred HHhhhcccCC--CCCeEEEecChh
Q 011149 173 HRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 173 qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
||+||++|.| ..+..+++....
T Consensus 527 QR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 527 QRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHhhcccccCCceeEeeccc
Confidence 9999999999 567777765543
No 102
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.44 E-value=3.3e-12 Score=135.82 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=89.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-c---------------------------------------ceeeecCCCCHHHHHH
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRER 128 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-~---------------------------------------~~~~lhg~~~~~~r~~ 128 (492)
-++||||-+++.|++.++.|... + .+.++||++-+--++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 48999999999999999988641 0 3667899999999999
Q ss_pred HHhhhcCCCeEEEEecccccccCCCCCcCEEEec----C----CCCChhHHHHHhhhcccCC--CCCeEEEecChh
Q 011149 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY----E----LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 129 ~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~----~----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
+...|..|-++||+||..+|.|+|.|.-++|+.- | .--.+-.|.||+||+||.| .+|+++++....
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999999999999999999988887731 1 1235779999999999988 678888886543
No 103
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.44 E-value=2.5e-12 Score=141.36 Aligned_cols=187 Identities=18% Similarity=0.295 Sum_probs=140.9
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCe
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (492)
++-|+.+..+.-+|-+|||.=+....++-.-+++-..|...+ ... -.|+.++. +. +...+-..++..+..+++
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP--~~R--~pV~T~V~--~~-d~~~ireAI~REl~RgGQ 805 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP--EDR--LPVKTFVS--EY-DDLLIREAILRELLRGGQ 805 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC--CCC--cceEEEEe--cC-ChHHHHHHHHHHHhcCCE
Confidence 345667777889999999976666666655666665554321 111 22332322 22 222223445566678899
Q ss_pred EEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC-C
Q 011149 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P-~ 166 (492)
+-...|..+..+++++.|+.- ..+.+.||.|+..+-++++..|-+|+++|||||.+.+.|||||+++.+|.-+.- .
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccc
Confidence 999999999999999999874 568899999999999999999999999999999999999999999988854332 3
Q ss_pred ChhHHHHHhhhcccCCCCCeEEEecChh------hHHHHHHHHH
Q 011149 167 DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLER 204 (492)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~ 204 (492)
-.+++.|..||+||..+.+.||+++.+. -.+.++.|+.
T Consensus 886 GLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 886 GLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred cHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 4679999999999999999999998853 2455666655
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1.5e-12 Score=141.13 Aligned_cols=167 Identities=21% Similarity=0.183 Sum_probs=127.5
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHHHHHHH-HccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~ 99 (492)
++..||.|...+...+.+.|--+.+.| . .+.+.....+ -.+......|...+...+.. +....++||||+|++
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~vv~I--P---tnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~ 441 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDVVVI--P---TNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIE 441 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCEEEc--C---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 456688888777666666664332222 1 1111111111 12223445677777766644 346689999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc----------------------
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV---------------------- 156 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v---------------------- 156 (492)
.++.++..|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+|+||+||+-=
T Consensus 442 ~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~ 519 (830)
T PRK12904 442 KSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKI 519 (830)
T ss_pred HHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHH
Confidence 99999999985 7999999996 8899999999999999999999999999999742
Q ss_pred ----------------CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 157 ----------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 157 ----------------~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
=|||-...|.|..---|-.||+||.|.+|.+..|++-.|
T Consensus 520 ~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 520 KAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 178888999999999999999999999999999887654
No 105
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.39 E-value=9.1e-12 Score=135.55 Aligned_cols=179 Identities=21% Similarity=0.336 Sum_probs=126.8
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcC-CCceEEeecccccccccceEEEEEEcCccc---HHHH-----HHHHHHHHccCC
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRTI-----LSDLITVYAKGG 89 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~-----l~~ll~~~~~~~ 89 (492)
...+++.+|||+|+.. +.+. |+. ++.-+-... ...-+..+.|.++-+.... +.++ ...+++...+ .
T Consensus 473 e~~RlVGLSATLPNy~-DV~~-Fl~v~~~glf~fd--~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk-~ 547 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYE-DVAS-FLRVDPEGLFYFD--SSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGK-N 547 (1674)
T ss_pred cCceeeeecccCCchh-hhHH-HhccCcccccccC--cccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCC-C
Confidence 4789999999999853 3333 433 443322221 1122344566666554432 2222 3344444433 8
Q ss_pred eEEEEeCChHHHHHHHHHHHcc--------------------------------------cceeeecCCCCHHHHHHHHh
Q 011149 90 KTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLN 131 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~r~~~~~ 131 (492)
++|||+.+|+++.+.|..++.. +.+..+|.+|+..+|+.+.+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 9999999999988888877621 24678899999999999999
Q ss_pred hhcCCCeEEEEecccccccCCCCCcCEEE----ecCC------CCChhHHHHHhhhcccCC--CCCeEEEecChhhHHHH
Q 011149 132 GFRQGKFTVLVATDVAARGLDIPNVDLII----HYEL------PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTV 199 (492)
Q Consensus 132 ~F~~g~~~iLVaT~~~~~Gidi~~v~~VI----~~~~------P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~ 199 (492)
.|++|.++|||+|-.+++|+|+|.-+++| -||+ +.++.+.+||.||+||.. ..|..+++....|..+.
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhh
Confidence 99999999999999999999999888777 3664 457899999999999976 55677777666665544
Q ss_pred HHH
Q 011149 200 RSL 202 (492)
Q Consensus 200 ~~l 202 (492)
..+
T Consensus 708 ls~ 710 (1674)
T KOG0951|consen 708 LSL 710 (1674)
T ss_pred HHh
Confidence 443
No 106
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.39 E-value=2.2e-11 Score=131.00 Aligned_cols=176 Identities=19% Similarity=0.323 Sum_probs=120.8
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcC-CCc-eEEeecccccccccceEEEEEEcCcc---cHHH-----HHHHHHHHHcc
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTAT---SKRT-----ILSDLITVYAK 87 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~-~i~~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~l~~ll~~~~~ 87 (492)
....++|.+|||+|+ +.+++. ||+ +|. -+-.-. ..-.+..+.+.++-.+.. .... ....+++.+..
T Consensus 273 qs~IRivgLSATlPN-~eDvA~-fL~vn~~~glfsFd--~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~ 348 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPN-YEDVAR-FLRVNPYAGLFSFD--QRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE 348 (1230)
T ss_pred hhheEEEEeeccCCC-HHHHHH-HhcCCCccceeeec--ccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc
Confidence 456899999999997 456665 555 432 121111 111122233333333222 2221 22345555667
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc------------------------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEe
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI------------------------IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~------------------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (492)
+.+++|||.++..+...|+.|.+. .....+|.+|..++|..+.+.|..|.++||+|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 889999999999999999888641 12456899999999999999999999999999
Q ss_pred cccccccCCCCCcCEEE----ecCCCC------ChhHHHHHhhhcccCC--CCCeEEEecChhhHH
Q 011149 144 TDVAARGLDIPNVDLII----HYELPN------DPETFVHRSGRTGRAG--KEGTAILMFTSSQRR 197 (492)
Q Consensus 144 T~~~~~Gidi~~v~~VI----~~~~P~------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~ 197 (492)
|..++.|+|+|+-.++| .||.-. ..-+.+|..||+||.. ..|.++++.+.....
T Consensus 429 TaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred cceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 99999999999655554 233322 3567799999999975 678888887765443
No 107
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=1.5e-11 Score=133.75 Aligned_cols=167 Identities=19% Similarity=0.165 Sum_probs=124.3
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHH-HHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~ 99 (492)
++-.||.|...+..++.+-|--+. +.+. .+.+.....+ -.+......|..++ ..+...+..+.++||||+|++
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~V--v~IP---tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie 455 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEV--VVIP---TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIE 455 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCE--EECC---CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 345678888776666666554332 2221 1221111111 11223334565544 444455567889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC-----------------------
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----------------------- 155 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~----------------------- 155 (492)
.++.++..|.+ ++++..||+.+.+.+++.+.++|+.|. |+||||+|+||+||.=
T Consensus 456 ~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~ 533 (896)
T PRK13104 456 ASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAV 533 (896)
T ss_pred HHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHH
Confidence 99999999996 899999999999999999999999995 9999999999999851
Q ss_pred ----------c-----CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 156 ----------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 156 ----------v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
| =|||-...+.|..-=-|-.||+||.|.+|.+..|++-.|
T Consensus 534 ~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 534 KKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1 168888888888888999999999999999999887654
No 108
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.38 E-value=7.2e-11 Score=119.44 Aligned_cols=200 Identities=18% Similarity=0.229 Sum_probs=141.6
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc---cc------HHHHHHHHH-HHHccC
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TS------KRTILSDLI-TVYAKG 88 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~------k~~~l~~ll-~~~~~~ 88 (492)
.+.|++-.|||+...++.....+--+ .++++.... .+..-+++.+..+. .. +..-...++ +....+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~--E~~Li~~DG--SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~ 525 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLS--ELELVTIDG--SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHG 525 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCc--ceEEEEecC--CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcC
Confidence 57899999999987776555433223 333332211 22334455554432 11 121122222 223456
Q ss_pred CeEEEEeCChHHHHHHHHHHHccc---------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 89 GKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~~---------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
-++|-||+.++.|+.+....++.+ .+..+.|+...++|.++...+-.|++.-+|||++++.||||..++.|
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 799999999999998876665421 35567899999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEe--cChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILM--FTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l--~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (492)
++.++|.+...+.|..||+||..++..++.+ ..|-+..++..-+.....+-.++.+....+.+
T Consensus 606 l~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~i 670 (1034)
T KOG4150|consen 606 LHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHV 670 (1034)
T ss_pred EEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHH
Confidence 9999999999999999999999888766555 44667777776666666555555555444433
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=2.1e-11 Score=132.21 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=124.2
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE--EEEEcCcccHHHH-HHHHHHHHccCCeEEEEeCCh
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL--YAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTK 98 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~--~~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~ 98 (492)
++..||.|...+..++.+.|--+.+.| +.+.+.....+ ..+ .....|..+ +..+...+..+.++||||+|+
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~Vv~I-----PTnkp~~R~d~~d~iy-~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv 459 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDTVVV-----PTNRPMVRKDMADLVY-LTADEKYQAIIKDIKDCRERGQPVLVGTVSI 459 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCEEEC-----CCCCCccceeCCCcEE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcH
Confidence 345678888766666665553332222 11222111111 122 222345444 445555566788999999999
Q ss_pred HHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC----------------------
Q 011149 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN---------------------- 155 (492)
Q Consensus 99 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~---------------------- 155 (492)
+.++.++..|.. ++++..||+.+++.+++.+.++|+.|. |+|||++++||+||.=
T Consensus 460 ~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~ 537 (908)
T PRK13107 460 EQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKI 537 (908)
T ss_pred HHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHH
Confidence 999999999986 899999999999999999999999998 9999999999999961
Q ss_pred ----------c-----CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 156 ----------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 156 ----------v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
| =|||-...+.|..-=-|-.||+||.|.+|.+..|++-.|
T Consensus 538 ~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 538 KADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 1 278888899998888999999999999999999988655
No 110
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=8.6e-12 Score=130.42 Aligned_cols=204 Identities=20% Similarity=0.312 Sum_probs=136.1
Q ss_pred CCcEEEEeeeCChHHHHHH--HHHcC-CCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc--cCCeEEEE
Q 011149 20 KRQSMLFSATMPSWVKKLS--RKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA--KGGKTIVF 94 (492)
Q Consensus 20 ~~q~ll~SAT~p~~i~~~~--~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~~iVF 94 (492)
..++|+||||+ .+.++. +..+. -|..|.+...+ .+..| |+.-..+...-.++....+..+. +.+-+|||
T Consensus 414 pLKLIIMSATL--RVsDFtenk~LFpi~pPlikVdARQ---fPVsI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 414 PLKLIIMSATL--RVSDFTENKRLFPIPPPLIKVDARQ---FPVSI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred ceeEEEEeeeE--EecccccCceecCCCCceeeeeccc---CceEE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 46789999998 233433 22333 23445443221 12222 33333444444555555555443 56789999
Q ss_pred eCChHHHHHHHHHHHccc--------------------------------------------------------------
Q 011149 95 TQTKRDADEVSLALTSII-------------------------------------------------------------- 112 (492)
Q Consensus 95 ~~t~~~~~~l~~~l~~~~-------------------------------------------------------------- 112 (492)
+....++++|++.|++.+
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 999999999999987531
Q ss_pred --------------------------------------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 113 --------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 113 --------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
.|..|++-|+.+.+.++++.--.|..-++|||+||+..|.||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 244567778899999999999999999999999999999999
Q ss_pred CcCEEEecCC--------C----------CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 155 NVDLIIHYEL--------P----------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 155 ~v~~VI~~~~--------P----------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
+|.+||+.+. - .+.++--||+||+||.| +|+||-||+..=. ...|+..
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf----------~~~Fe~f--- 713 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVF----------SNDFEEF--- 713 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHh----------hcchhhh---
Confidence 9999995442 2 24556689999999987 8999999986321 1112211
Q ss_pred CHHHHHHHHHHHHHHHhccCCccchhh
Q 011149 217 VVEDVLESSAEQVVATLNGVHPESVEF 243 (492)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (492)
+..+|++.-.+.++..++..+...+..
T Consensus 714 S~PEIlk~Pve~lvLqMKsMnI~kVvn 740 (1172)
T KOG0926|consen 714 SLPEILKKPVESLVLQMKSMNIDKVVN 740 (1172)
T ss_pred ccHHHhhCcHHHHHHHHHhcCccceec
Confidence 234566666667777777665544443
No 111
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=7.5e-12 Score=128.68 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=165.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-CCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi~~v 156 (492)
...+||.+||++.|.++...+.+ .+.+.+++|+.+...+..-+++ .++|+|||+ .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 45799999999999999988874 2558999999999888888877 789999998 44444 788899
Q ss_pred CEEEe--------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHH-------
Q 011149 157 DLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV------- 221 (492)
Q Consensus 157 ~~VI~--------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~------- 221 (492)
+++|. .++-.++...++.+.++-| ..++++.+=...++.|...+......+.+-...+.
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r------Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~ 314 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR------QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIR 314 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc------cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchh
Confidence 99882 3334466777777777655 45565555455566665544434444333322111
Q ss_pred ----------HHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEE
Q 011149 222 ----------LESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288 (492)
Q Consensus 222 ----------~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~ 288 (492)
....+..++....+.....+..|.++ +++|...+....+.+..+|.. .+|..+...|..+++|...
T Consensus 315 qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd-~sQ~eR~~~L~~FreG~~~ 393 (519)
T KOG0331|consen 315 QIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGD-KSQSERDWVLKGFREGKSP 393 (519)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeeccc-ccHHHHHHHHHhcccCCcc
Confidence 01122222222222222233344333 333333332222334444443 4555555667789999999
Q ss_pred EEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHH-HHHHh
Q 011149 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIA-KELLN 350 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a-~~~i~ 350 (492)
++|+|+. |++++|+.+|..+|+++.|...++ |||+..+...+.+.+||....... ..+++
T Consensus 394 vLVATdV--AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 394 VLVATDV--AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred eEEEccc--ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 9999999 899999999999999999998876 899999877778889998765443 34443
No 112
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.27 E-value=2.6e-11 Score=135.49 Aligned_cols=135 Identities=18% Similarity=0.353 Sum_probs=111.2
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC---CeEEEEeccc
Q 011149 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG---KFTVLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g---~~~iLVaT~~ 146 (492)
..|+.+|..+|..+. .+.++|||+......+.|...|.. .+....+||.++..+|+.+++.|+.. ..-+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 467888888887663 457999999999999999999874 78899999999999999999999753 3467899999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEE--EecChh--hHHHHHHHHHHh
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI--LMFTSS--QRRTVRSLERDV 206 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i--~l~~~~--e~~~~~~l~~~~ 206 (492)
.+.|||+..+++||+||+||++..+.|+++|+.|.|.+..+. .|++.. |...++...+++
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999765544 344432 445555444443
No 113
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.26 E-value=2.7e-11 Score=126.07 Aligned_cols=107 Identities=24% Similarity=0.406 Sum_probs=89.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-c---------------------------------------ceeeecCCCCHHHHH
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRE 127 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~---------------------------------------~~~~lhg~~~~~~r~ 127 (492)
..++|||+-++++|+.+|..+.+. + .+.++|++|-+--++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 458999999999999999888641 1 356789999999999
Q ss_pred HHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cCC----CCChhHHHHHhhhcccCC--CCCeEEEecChh
Q 011149 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~~----P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
.+.-.|..|-+++|+||...+.|||.|.-++|+- ||- -.+.-.|+||+||+||.| ..|.||++++..
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 9999999999999999999999999998887762 331 125678999999999988 568899988754
No 114
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.24 E-value=5e-11 Score=125.21 Aligned_cols=255 Identities=18% Similarity=0.198 Sum_probs=134.4
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcCE
Q 011149 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~~ 158 (492)
++||.+||++.|.++++.+.. .+.+..++|+++...+...+. +..+|||+|+ .....+++..+++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 699999999999999988874 256778899988776544332 4678999997 2344567888988
Q ss_pred EEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHH-------H-HH
Q 011149 159 IIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDV-------L-ES 224 (492)
Q Consensus 159 VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~-------~-~~ 224 (492)
||.=+.- .+ ..|.+.+-+.-..-.....+++++.+-...++.+...+......+.+... +.+ . +.
T Consensus 153 lViDEah~ll~-~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 231 (456)
T PRK10590 153 LVLDEADRMLD-MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR 231 (456)
T ss_pred EEeecHHHHhc-cccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH
Confidence 8742110 00 01222111111111123455666655444445554444333322111100 000 0 01
Q ss_pred HHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCC
Q 011149 225 SAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF 301 (492)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 301 (492)
..+.+...+.......+..|..+ ++.+.+.+....+.+...|. ++++..+.+.+..++.+.+.++|+++. ..+|
T Consensus 232 k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg-~~~~~~R~~~l~~F~~g~~~iLVaTdv--~~rG 308 (456)
T PRK10590 232 KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG-NKSQGARTRALADFKSGDIRVLVATDI--AARG 308 (456)
T ss_pred HHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHHcCCCcEEEEccH--HhcC
Confidence 11111122222222222333222 22222221111111111110 122222333445677888999999997 6889
Q ss_pred CChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHHHHHHhhc
Q 011149 302 MSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (492)
Q Consensus 302 ~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~ 352 (492)
+|..+|..+|++..|...++ +||.......+...+++...+....+-++..
T Consensus 309 iDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred CCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 99999999999988876544 7888887665555567766655444444443
No 115
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.22 E-value=8.2e-11 Score=122.59 Aligned_cols=93 Identities=33% Similarity=0.563 Sum_probs=88.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P 165 (492)
...++||||.++..++.++..+.. .+ +..+.+..++.+|..++++|+.+.+++||++.++.+|+|+|+++++|...+.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 356999999999999999999985 44 8899999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhhccc
Q 011149 166 NDPETFVHRSGRTGR 180 (492)
Q Consensus 166 ~~~~~y~qr~GR~gR 180 (492)
.+...|+||+||.-|
T Consensus 361 ~S~~~~~Q~lGR~LR 375 (442)
T COG1061 361 GSRRLFIQRLGRGLR 375 (442)
T ss_pred CcHHHHHHHhhhhcc
Confidence 999999999999999
No 116
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.14 E-value=5e-09 Score=111.24 Aligned_cols=105 Identities=17% Similarity=0.307 Sum_probs=86.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc--------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI--------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~--------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.+-++||.+-......|...|... +.+..+|+.++..++.++.+....+..++++.|.+++.-|.|.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 467899999999988888877532 578889999999999999999999999999999999999999998888
Q ss_pred EecCC------------------CCChhHHHHHhhhcccCCCCCeEEEecCh
Q 011149 160 IHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 160 I~~~~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
|+.+. -.+....+||.||++|. ++|.|..+.+.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 84332 12556779999999987 57788777654
No 117
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.13 E-value=5.6e-10 Score=127.00 Aligned_cols=93 Identities=23% Similarity=0.421 Sum_probs=81.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccc----------ceeeecCCCCHHHHHHHHhhhcCCCe-EEEEecccccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSII----------ASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~----------~~~~lhg~~~~~~r~~~~~~F~~g~~-~iLVaT~~~~~Gidi~~v 156 (492)
..++||||.+++.|+.+++.|.+.+ .+..+||+++ ++.+++++|+++.. .|||+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 3699999999999999998876421 3566899875 46789999999887 699999999999999999
Q ss_pred CEEEecCCCCChhHHHHHhhhcccCC
Q 011149 157 DLIIHYELPNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g 182 (492)
++||.++++.|...|+||+||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999953
No 118
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.07 E-value=2.1e-10 Score=92.86 Aligned_cols=95 Identities=38% Similarity=0.563 Sum_probs=52.4
Q ss_pred CCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCC-CcCccccEEEeecCccceeEeecCHHHHHH
Q 011149 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAKE 347 (492)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~ 347 (492)
|+++ ++.|||+++.+|++|+.+....++ -++..++..|.+..+. ..+.|++|.++++. +|++||||++.+++
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~~i----~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSREI----RSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCCcC----CCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEEChHHHHHH
Confidence 4566 788999999999999999888643 4577788888777664 56679999999885 68999999999999
Q ss_pred HHhhcCCC-CCceeeeccCCCCCC
Q 011149 348 LLNKQIPP-GNTISKITKLPALQD 370 (492)
Q Consensus 348 ~i~~~~~~-~i~~~~~~~lp~~~~ 370 (492)
+++.+.+. +++++++++||++++
T Consensus 74 ~~~~~~~~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 74 FLAKWEDSRGWQLSVATELPELQE 97 (97)
T ss_dssp HHHH--SS-S-EEE----------
T ss_pred HHHhCcccCCcEEEEcccCcCccC
Confidence 99999885 899999999999874
No 119
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.5e-10 Score=122.90 Aligned_cols=239 Identities=17% Similarity=0.238 Sum_probs=158.7
Q ss_pred EEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-CCCCCcCE
Q 011149 91 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 158 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi~~v~~ 158 (492)
+||++||++.|.++++.+.. .+.+..++|+++...+...++. + .+|||+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999998874 2558899999998887766655 4 89999998 55565 89999998
Q ss_pred EEe------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH------HHHH----
Q 011149 159 IIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV------EDVL---- 222 (492)
Q Consensus 159 VI~------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~------~~~~---- 222 (492)
+|. +|+ .|..-+-.....-..-..+++++.+-...+..+.+.+..++..+.+... ..+.
T Consensus 178 lVlDEADrmLd~-----Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~ 252 (513)
T COG0513 178 LVLDEADRMLDM-----GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYL 252 (513)
T ss_pred EEeccHhhhhcC-----CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEE
Confidence 883 444 2222222222211225677787776555677777776665544333311 1100
Q ss_pred ----H-HHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeec
Q 011149 223 ----E-SSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294 (492)
Q Consensus 223 ----~-~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (492)
+ .+...+...+..........|..+ ++.|...+....+.++.+|.. ++|..+.+.+..++.+..+++|++|
T Consensus 253 ~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~-l~q~~R~~~l~~F~~g~~~vLVaTD 331 (513)
T COG0513 253 EVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGD-LPQEERDRALEKFKDGELRVLVATD 331 (513)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCC-CCHHHHHHHHHHHHcCCCCEEEEec
Confidence 1 244444555554444444444433 333333333323333334433 4555556677788899999999999
Q ss_pred CccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC
Q 011149 295 SAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 295 ~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~ 341 (492)
. +++|+|+.+|.++||++.|...++ |||+..+...+.+.+|+.-.
T Consensus 332 v--aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 332 V--AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred h--hhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9 799999999999999999987665 89999988777777888763
No 120
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.04 E-value=2.4e-09 Score=107.46 Aligned_cols=250 Identities=13% Similarity=0.180 Sum_probs=154.2
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcCE
Q 011149 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~~ 158 (492)
-.+|.|||++.|.+|....++ ++.++++||+++.-++...|+. ...|+|||+ |--.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhcccceeeeE
Confidence 357889999999998776654 3778999999999998888874 778999998 5556789999998
Q ss_pred EE------ecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC---CCCHHHHH-----
Q 011149 159 II------HYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS---PPVVEDVL----- 222 (492)
Q Consensus 159 VI------~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~---~p~~~~~~----- 222 (492)
+| +||+- ..+.+..|.+ ++-...++++.+-...+..+.+.+...+.++. +....+-+
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hi-------rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~ 446 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHI-------RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVS 446 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhc-------CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheee
Confidence 77 34432 1233333333 34566778888888888888777655443321 11111100
Q ss_pred -----HHHHHHHHHHhccCCc-cchhhhHH---HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEee
Q 011149 223 -----ESSAEQVVATLNGVHP-ESVEFFTP---TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTR 293 (492)
Q Consensus 223 -----~~~~~~~~~~l~~~~~-~~~~~f~~---~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (492)
..++.-++..|..... ..+..|.. .++++...+....+...++|.. +.|..+...|..++.....+++++
T Consensus 447 V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgd-kdqa~rn~~ls~fKkk~~~Vlvat 525 (731)
T KOG0339|consen 447 VCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGD-KDQAERNEVLSKFKKKRKPVLVAT 525 (731)
T ss_pred eccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCc-hhhHHHHHHHHHHhhcCCceEEEe
Confidence 1222333333333222 22222211 1333333333333333344433 334444455667777888899999
Q ss_pred cCccccCCCChhHHHHHHhhhCCCCc----CccccEEEeecCccceeEeec-CHHHHHHHHhhcC
Q 011149 294 DSAFSRGFMSARSVMGFLSDVYPTAA----DEIGKIHIIADDRVQGAVFDL-PEEIAKELLNKQI 353 (492)
Q Consensus 294 ~~~~~~~~~~~~~i~~~i~~~~~~~~----~~ig~i~~~~~~~~~gs~fdv-~~~~a~~~i~~~~ 353 (492)
+. +++++++.+|--+|+++.--.- ..||++.+....++.-++|.- +.+.+-.+++.++
T Consensus 526 Dv--aargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 526 DV--AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred eH--hhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 98 7899999999999998753222 238999998777766666644 3445556665544
No 121
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.02 E-value=7.5e-09 Score=114.30 Aligned_cols=104 Identities=25% Similarity=0.439 Sum_probs=85.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----------------------------c-------------ceeeecCCCCHHHH
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-----------------------------I-------------ASEALHGDISQHQR 126 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----------------------------~-------------~~~~lhg~~~~~~r 126 (492)
-++|+|+-++..|+..+..+... + .+.++|++|-+..+
T Consensus 380 lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K 459 (1041)
T COG4581 380 LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459 (1041)
T ss_pred CceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHH
Confidence 58999999999999887766410 1 13467999999999
Q ss_pred HHHHhhhcCCCeEEEEecccccccCCCCCcCEEE----ecC----CCCChhHHHHHhhhcccCC--CCCeEEEecC
Q 011149 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 192 (492)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI----~~~----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~ 192 (492)
..+.+.|..|-++||+||.+++.|||.|.-++|+ .+| -+-++..|+|+.||+||.| ..|.++++-.
T Consensus 460 ~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred HHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999999999999999999999999777766 122 3457899999999999988 5688888733
No 122
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.90 E-value=2.6e-08 Score=107.25 Aligned_cols=244 Identities=11% Similarity=0.110 Sum_probs=129.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccc--cCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~--Gidi~~v 156 (492)
.++||.++|++.|.++++.+.. .+.+..+||+.+...+...++. ..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999999988764 3568899999988877666643 678999996 2222 3667778
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccC-C-CCCeEEEecChhhHHHHHHHHHHhCCCceec--CCCC--HHH--------
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRA-G-KEGTAILMFTSSQRRTVRSLERDVGCKFEFV--SPPV--VED-------- 220 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~-g-~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~--~~p~--~~~-------- 220 (492)
.+||.=+.- .+ ..|...+-..-+. . .....+++++.+-...+..+..........+ .... ...
T Consensus 161 ~~lViDEAh~lld-~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~ 239 (572)
T PRK04537 161 EICVLDEADRMFD-LGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP 239 (572)
T ss_pred eeeEecCHHHHhh-cchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec
Confidence 877631110 00 0122222111111 1 1134566666554433333333222211111 0000 000
Q ss_pred HHHHHHHHHHHHhccCCccchhhhH---HHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCcc
Q 011149 221 VLESSAEQVVATLNGVHPESVEFFT---PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 297 (492)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~f~---~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 297 (492)
........+...+..........|. ..++.+.+.+....+...++|. .+++..+.+.+..++.+...++|+++.
T Consensus 240 ~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg-~l~~~eR~~il~~Fr~G~~~VLVaTdv-- 316 (572)
T PRK04537 240 ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSG-DVPQKKRESLLNRFQKGQLEILVATDV-- 316 (572)
T ss_pred CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeC-CCCHHHHHHHHHHHHcCCCeEEEEehh--
Confidence 0011222233333322222222332 2233333222111111111111 122222333455677889999999997
Q ss_pred ccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec
Q 011149 298 SRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 298 ~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv 340 (492)
..+|+|..+|..+|+++.|...++ +||.......+...+|+.-
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~ 363 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACE 363 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecH
Confidence 688999999999999988866554 7888887665554556543
No 123
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.87 E-value=7.8e-09 Score=100.64 Aligned_cols=242 Identities=14% Similarity=0.164 Sum_probs=151.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----------
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD----------- 145 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-----------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~----------- 145 (492)
+.-.||.|++++.|.+.++.+... +.+..--|+++-.++..++++ .+.|+|||+
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCcchHHHHHHHhh
Confidence 346799999999999988877643 234455688999998888877 789999998
Q ss_pred ---cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----
Q 011149 146 ---VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV---- 218 (492)
Q Consensus 146 ---~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~---- 218 (492)
-+-|-+-+...+-+|+.++-.++.+..--. +.....+|++.+....++.+.+....++..+.+-..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F-------K~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAs 394 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF-------KGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAAS 394 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH-------hhhhheeeeeccccHHHHHHHHhhcccceEEecccccccc
Confidence 123334445555566666655543322111 223567889999988999988887766655433221
Q ss_pred ----HHH--H--HHHHHHHHHHhccCCccchhhhHHH--HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEE
Q 011149 219 ----EDV--L--ESSAEQVVATLNGVHPESVEFFTPT--AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288 (492)
Q Consensus 219 ----~~~--~--~~~~~~~~~~l~~~~~~~~~~f~~~--a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~ 288 (492)
.++ + ++++-.+++-|....+..+.+-... +..+-+.+-...+.+...|. |..|..+.+.+..++.|...
T Consensus 395 ldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHG-GKDQedR~~ai~afr~gkKD 473 (610)
T KOG0341|consen 395 LDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHG-GKDQEDRHYAIEAFRAGKKD 473 (610)
T ss_pred hhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeec-CcchhHHHHHHHHHhcCCCc
Confidence 111 1 2344455566666555444332111 11111111111111111121 24444555667778889999
Q ss_pred EEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
++++++. +..|+|-.+|-|+||++.|..-++ |||+....+.+.+-+|+.-..+
T Consensus 474 VLVATDV--ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 474 VLVATDV--ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred eEEEecc--hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 9999998 788999999999999999876554 8888877766655577765443
No 124
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.85 E-value=1.1e-08 Score=103.89 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=88.2
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcC--CCeEEEEecccccccCC
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLD 152 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gid 152 (492)
.+..-++.+.+ +-||| |-+++..-.+...+.+ ...+++++|.||++.|.+--..|.+ ++++||||||++.+|+|
T Consensus 347 ~~~~sl~nlk~-GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLN 424 (700)
T KOG0953|consen 347 TALGSLSNLKP-GDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLN 424 (700)
T ss_pred hhhhhhccCCC-CCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccc
Confidence 33344444433 44444 3357778888888875 3459999999999999999999988 89999999999999999
Q ss_pred CCCcCEEEecCC---------CCChhHHHHHhhhcccCC---CCCeEEEecCh
Q 011149 153 IPNVDLIIHYEL---------PNDPETFVHRSGRTGRAG---KEGTAILMFTS 193 (492)
Q Consensus 153 i~~v~~VI~~~~---------P~~~~~y~qr~GR~gR~g---~~g~~i~l~~~ 193 (492)
+ +|+-||.|++ |.+..+..|-+||+||.+ ..|.+.+|...
T Consensus 425 L-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 425 L-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred c-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 9 6888997775 456788899999999977 45666666543
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=9.8e-08 Score=103.31 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=112.1
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEE-EEEcCcccHHHHH-HHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~ 99 (492)
++..||.|.-.+-.++.+.|--+. +.+ +.+.+.....+- .+......|+.++ ..+...+..+.|+||.|.|.+
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~V--v~I---PTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMRV--NVV---PTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCE--EEC---CCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 455678887666556665553322 222 112211111111 1222333455444 445555667889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC-CeEEEEecccccccCCCCCcC--------EEEecCCCCChh
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARGLDIPNVD--------LIIHYELPNDPE 169 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~iLVaT~~~~~Gidi~~v~--------~VI~~~~P~~~~ 169 (492)
..+.|+..|.+ +++..+|+..- .+++..+-. ..| .-.|.|||++|.||.||.--. |||....|.+..
T Consensus 438 ~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrR 514 (925)
T PRK12903 438 DSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRR 514 (925)
T ss_pred HHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHH
Confidence 99999999986 78888888863 333333322 223 346999999999999996322 899999999988
Q ss_pred HHHHHhhhcccCCCCCeEEEecChhh
Q 011149 170 TFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
---|-.||+||.|.+|.+..|++-.|
T Consensus 515 IDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 515 IDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHHhcccccCCCCCcceEEEecch
Confidence 88999999999999999888887654
No 126
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.83 E-value=7.8e-08 Score=103.95 Aligned_cols=183 Identities=18% Similarity=0.312 Sum_probs=119.4
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccH-----HHHHHHHHHHHccCCeEE
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTILSDLITVYAKGGKTI 92 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-----~~~l~~ll~~~~~~~~~i 92 (492)
-.++++||-|||..-+ ....---.....+.+...........+....+....... ..++..+-+.+..+.++|
T Consensus 347 ~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~l 424 (730)
T COG1198 347 KENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVL 424 (730)
T ss_pred HhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEE
Confidence 3589999999998544 333221111233444332222223333333222222222 445566666667788999
Q ss_pred EEeCChH------------------------------------------------------------HHHHHHHHHHcc-
Q 011149 93 VFTQTKR------------------------------------------------------------DADEVSLALTSI- 111 (492)
Q Consensus 93 VF~~t~~------------------------------------------------------------~~~~l~~~l~~~- 111 (492)
+|.|.+- -++.+.+.|.+.
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 9988654 256777777653
Q ss_pred --cceeeecCCCCHH--HHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC------CC------ChhHHHHHh
Q 011149 112 --IASEALHGDISQH--QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------PN------DPETFVHRS 175 (492)
Q Consensus 112 --~~~~~lhg~~~~~--~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~------P~------~~~~y~qr~ 175 (492)
.++..+.+|.+.. .-+..++.|.+|+.+|||.|++++.|.|+|++++|...|. |. ....+.|-+
T Consensus 505 P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qva 584 (730)
T COG1198 505 PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVA 584 (730)
T ss_pred CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHH
Confidence 4567777776543 3567899999999999999999999999999998774332 21 234568899
Q ss_pred hhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 176 GRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 176 GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
||+||.+++|.+++-....+...++.+
T Consensus 585 GRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 585 GRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred hhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 999999999998887666565555544
No 127
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.82 E-value=1.4e-08 Score=99.51 Aligned_cols=252 Identities=13% Similarity=0.145 Sum_probs=153.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
...+||+++|++.+.++.....+ .+...+++|+-...++.+-+++ ...|+|||+ ...--||+..++
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siT 369 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASIT 369 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeE
Confidence 35799999999999988766653 4677788887666665555554 679999998 234456777788
Q ss_pred EEEe------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC-----------------
Q 011149 158 LIIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS----------------- 214 (492)
Q Consensus 158 ~VI~------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~----------------- 214 (492)
++|. +|+- |.-.+-+.-=.=++-...++.+.+=..-+++|...+.+.+-.+.
T Consensus 370 YlVlDEADrMLDMg-----FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~ 444 (629)
T KOG0336|consen 370 YLVLDEADRMLDMG-----FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII 444 (629)
T ss_pred EEEecchhhhhccc-----ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEE
Confidence 7773 4442 22222222211234455666666656667777666544432211
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccchhhhHH--HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEe
Q 011149 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFTP--TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (492)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~--~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (492)
++...+-. .....+++.+.. ..+.+.+... .|..|-..+....+.+.-+|.. .+|..+++++..++.|.++++++
T Consensus 445 v~~d~~k~-~~~~~f~~~ms~-ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~-r~Q~DrE~al~~~ksG~vrILva 521 (629)
T KOG0336|consen 445 VTTDSEKL-EIVQFFVANMSS-NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGN-REQSDREMALEDFKSGEVRILVA 521 (629)
T ss_pred ecccHHHH-HHHHHHHHhcCC-CceEEEEEechhhhhhccchhhhcccchhhccCC-hhhhhHHHHHHhhhcCceEEEEE
Confidence 11111111 122222222221 1112222111 2444444444444444444443 34555667788899999999999
Q ss_pred ecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC-HHHHHHHHhhcC
Q 011149 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP-EEIAKELLNKQI 353 (492)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~-~~~a~~~i~~~~ 353 (492)
++. +.+|+|+.||.|++|++.|..-+. +|++..+...+...+|+.-. -.+++++|+-+.
T Consensus 522 TDl--aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe 585 (629)
T KOG0336|consen 522 TDL--ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILE 585 (629)
T ss_pred ech--hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHH
Confidence 998 799999999999999999976554 88888887766666787664 456677776543
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=8.5e-08 Score=102.32 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=115.6
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHHccCCeEEEEeCChHH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKRD 100 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~~ 100 (492)
.+..||.|...+..++.+.|--+ ++.+. ........+.....+ .....|..+ +..+...+..+.|+||.|.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IP-tnkp~~R~d~~d~iy-~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSVIP-PNKPNIREDEADRVY-ATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEECC-CCCCceeecCCCceE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 46678999877777776666433 22221 111111111111222 223345544 44555666778899999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC----------c-----CEEEecCC
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----------V-----DLIIHYEL 164 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~----------v-----~~VI~~~~ 164 (492)
.+.|+..|.+ +++..+|+..-...+-+.+-++=+ .-.|.|||++|.||.||.- | =|||-...
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer 517 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR 517 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC
Confidence 9999999996 788888988744333333333323 2359999999999999862 2 27999999
Q ss_pred CCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 165 P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
|.|..--.|-.||+||.|.+|.+..|++-.|
T Consensus 518 heSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 518 HRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999999999888655
No 129
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=98.75 E-value=3.8e-09 Score=57.37 Aligned_cols=17 Identities=59% Similarity=1.499 Sum_probs=16.0
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.||+||++||+|+|||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 49999999999999996
No 130
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.72 E-value=9.7e-09 Score=100.27 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc----
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 145 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~---- 145 (492)
+.+|..||..- +...++|.+||++.|.+|++.+.. ++.+..|-|++....+...+.+ +..|||||+
T Consensus 117 LPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHHHH
Confidence 44555655532 346899999999999999998873 4789999999877665544444 677999998
Q ss_pred --cc-cccCCCCCcCEEE--------ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 146 --VA-ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 146 --~~-~~Gidi~~v~~VI--------~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
+. ..|+.+..+.+.| +.|+-...+.++-.+- .....+|++.+....+.+|++.....+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP-------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 22 5788888887766 3333333333333332 4566788888888889999888777777777
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccchhhh-HHHHHHHHh--------hhCHHHHHHHHHHHcCCC---------CCCCC
Q 011149 215 PPVVEDVLESSAEQVVATLNGVHPESVEFF-TPTAQRLIE--------EKGTDALAAALAQLSGFS---------RPPSS 276 (492)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f-~~~a~~l~~--------~~~~~~l~~al~~~~~~~---------~~~~~ 276 (492)
.++.-..+....+.. .-+....-+.+ ....+++.. ........+.++..+|+. +..+.
T Consensus 265 ~s~ky~tv~~lkQ~y----lfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 265 VSSKYQTVDHLKQTY----LFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRL 340 (476)
T ss_pred ccchhcchHHhhhhe----EeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHH
Confidence 666444333222211 11111111111 011111111 112334455566655543 33344
Q ss_pred cccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec
Q 011149 277 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv 340 (492)
.++..++.+.-.+++.+|. +.+|+|+..+..+||++.|...++ +||+......+...++|.-
T Consensus 341 g~l~~Fk~~~r~iLv~TDV--aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 341 GALNKFKAGARSILVCTDV--ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred HHHHHHhccCCcEEEecch--hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEeh
Confidence 4566788888999999999 899999999999999999988776 7888888776655566644
No 131
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.70 E-value=2.8e-07 Score=100.04 Aligned_cols=131 Identities=24% Similarity=0.356 Sum_probs=92.4
Q ss_pred CCCcEEEEeeeCChH-H-HHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeC
Q 011149 19 PKRQSMLFSATMPSW-V-KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~-i-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~ 96 (492)
+..+++..|||..+. . ..+.+..+... +- .......+|...|+.. .-.+.+..+++.+. .-.|||++
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgFe----vG--~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~ 343 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGFE----VG--SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVP 343 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCCc----cC--ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEE
Confidence 457889999998432 2 23444444421 11 1223345565566555 33344455666663 46899999
Q ss_pred C---hHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec----ccccccCCCCC-cCEEEecCCC
Q 011149 97 T---KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELP 165 (492)
Q Consensus 97 t---~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT----~~~~~Gidi~~-v~~VI~~~~P 165 (492)
. ++.+++|++.|+. ++.+..+|+. ..+.++.|..|++++||.. .++.||||+|. +.++|.|+.|
T Consensus 344 ~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 344 IDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9 9999999999996 7999999984 3788999999999999875 48999999995 5678866655
No 132
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.67 E-value=1.3e-07 Score=95.38 Aligned_cols=255 Identities=13% Similarity=0.132 Sum_probs=161.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-------cccccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------~~~~Gidi~~v 156 (492)
-++||.|||++.+-+++...++ .+.+...-|+|+-..++.+++. .-+|+|||+ --..+.|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 4899999999999988876653 2667778899999999999988 778999998 23456777788
Q ss_pred CEEEecCCCCChhHHHH-HhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHhcc
Q 011149 157 DLIIHYELPNDPETFVH-RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235 (492)
Q Consensus 157 ~~VI~~~~P~~~~~y~q-r~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ 235 (492)
.++|.-..-.=.+.|.+ ..--.-|.=.+-...+|++.+....++.|.+....++.++.+.+..+......+.++. +..
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiR-IR~ 407 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIR-IRP 407 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHhe-ecc
Confidence 87775332221222211 1111111113446788999999899999988877777776555443332222222110 000
Q ss_pred CCccchhhhHH-------------------HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCc
Q 011149 236 VHPESVEFFTP-------------------TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296 (492)
Q Consensus 236 ~~~~~~~~f~~-------------------~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (492)
..+.+.+.+.. .|.+|--=++.-.|.+.-+|.+ ++|..+..+|..++...+.+++++|.
T Consensus 408 ~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGs-LtQ~QRlesL~kFk~~eidvLiaTDv- 485 (691)
T KOG0338|consen 408 KREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGS-LTQEQRLESLEKFKKEEIDVLIATDV- 485 (691)
T ss_pred ccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhccc-ccHHHHHHHHHHHHhccCCEEEEech-
Confidence 00111111111 1111111122222333333433 56666777888899999999999999
Q ss_pred cccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec-CHHHHHHHHhh
Q 011149 297 FSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL-PEEIAKELLNK 351 (492)
Q Consensus 297 ~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv-~~~~a~~~i~~ 351 (492)
+.+|+|+..|--+||+..|...+. +||+..+...+...++|-- .....+.++..
T Consensus 486 -AsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 486 -ASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred -hhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 899999999999999998876553 8999888877776777744 34445555544
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.66 E-value=5.8e-07 Score=101.44 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=81.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE--EEe
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--IIH 161 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~--VI~ 161 (492)
..+++|||+++.+..+.++..|... .....+..+.. ..|.+++++|++++..||++|+.+.+|||+|+..+ ||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3578999999999999999998741 12223333333 57899999999999999999999999999998774 555
Q ss_pred cCCCCC------------------------------hhHHHHHhhhcccCCCCCeEEEecChh--hHHHHHHHHHHh
Q 011149 162 YELPND------------------------------PETFVHRSGRTGRAGKEGTAILMFTSS--QRRTVRSLERDV 206 (492)
Q Consensus 162 ~~~P~~------------------------------~~~y~qr~GR~gR~g~~g~~i~l~~~~--e~~~~~~l~~~~ 206 (492)
..+|.. ...+.|.+||.=|....--++++++.. ...+-+.+.+.+
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 565531 123478888988876443344444443 233334444433
No 134
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.64 E-value=3e-07 Score=100.70 Aligned_cols=167 Identities=19% Similarity=0.168 Sum_probs=113.6
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHH-HHHHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
++..||.|.-.+-.++.+.|--+ ++.+. .+.+.....+ -.+......|.. ++..+...+..+.++||-|.+.+
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~--v~~iP---t~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~ 579 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY--VLQVP---TFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVE 579 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECC---CCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 56678888866656665555332 22221 1111111111 011222334544 44556666677889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC---cC-----EEEecCCCCChhH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN---VD-----LIIHYELPNDPET 170 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~---v~-----~VI~~~~P~~~~~ 170 (492)
..+.++..|.+ +++..+|+..-...+-+.+-++=+ .-.|.|||+++.||.||.- |. |||....|.+..-
T Consensus 580 ~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Ri 657 (970)
T PRK12899 580 VSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRI 657 (970)
T ss_pred HHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCC--CCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHH
Confidence 99999999985 788888888633333333333323 3459999999999999842 22 7999999999999
Q ss_pred HHHHhhhcccCCCCCeEEEecChhh
Q 011149 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
-.|-.||+||.|.+|.+.+|++-.|
T Consensus 658 d~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 658 DRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred HHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999988655
No 135
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.60 E-value=3.4e-06 Score=86.35 Aligned_cols=182 Identities=15% Similarity=0.211 Sum_probs=135.0
Q ss_pred CcEEEEeeeCChHHHHHHHHHcCCCc-eEEeecccc-----cccccceEEEEEEcCccc-------HHHHH-HHHHHHHc
Q 011149 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD-----EKLAEGIKLYAISTTATS-------KRTIL-SDLITVYA 86 (492)
Q Consensus 21 ~q~ll~SAT~p~~i~~~~~~~~~~~~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~~-------k~~~l-~~ll~~~~ 86 (492)
+|+|+||+.+.+++..+..+++.|.. .+.+..... ......++|.+...+..+ +.+.. ..+|..+.
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 69999999999999999998777643 344332222 234456667766544322 22211 12333332
Q ss_pred ---cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--cccccCCCCCcCEEE
Q 011149 87 ---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLII 160 (492)
Q Consensus 87 ---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidi~~v~~VI 160 (492)
....+|||+++--+=..|...|++ .+....+|-..++.+-.++-..|.+|+.+||+-|. ..-+=..|..|.+||
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE
Confidence 346899999999999999999985 78888899999999999999999999999999997 334456688899999
Q ss_pred ecCCCCChhHHHHHhhhcccCC------CCCeEEEecChhhHHHHHHH
Q 011149 161 HYELPNDPETFVHRSGRTGRAG------KEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g------~~g~~i~l~~~~e~~~~~~l 202 (492)
.|.+|..+.-|-..+.-..... ....|.++++..|.-.++.|
T Consensus 376 FY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 376 FYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999999999988776544433 25789999999887666555
No 136
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.60 E-value=5.9e-08 Score=98.69 Aligned_cols=253 Identities=16% Similarity=0.226 Sum_probs=151.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-CCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi~~v~ 157 (492)
..+||+.||++.|.++++.-++. +.+...+|+.+...+.+- -...++|||||+ ++++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~----~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRF----IKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhh----hccCccEEEecCchhhhhhhcceeehhhCc
Confidence 57999999999999999988752 567778888544443333 334899999997 55665 7778888
Q ss_pred EEEe------cC---CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC------ceecC--------
Q 011149 158 LIIH------YE---LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK------FEFVS-------- 214 (492)
Q Consensus 158 ~VI~------~~---~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~------~~~~~-------- 214 (492)
++|. .| +-. ..-|-+.+.+-.-..-...+|++++-...++.+...+..+ +..+.
T Consensus 229 ~~vLDEADrMlD~mgF~p---~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q 305 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEP---QIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQ 305 (482)
T ss_pred EEEecchHHhhhhccccc---cHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccccccee
Confidence 7662 22 111 3344555554443455677787776665555554444332 11111
Q ss_pred -CCCHHHHHHHHHHHHHHHhccCC--ccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC---------CCCCCcccccC
Q 011149 215 -PPVVEDVLESSAEQVVATLNGVH--PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS---------RPPSSRSLINH 282 (492)
Q Consensus 215 -~p~~~~~~~~~~~~~~~~l~~~~--~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~---------~~~~~~~l~~~ 282 (492)
++...+ ..+...+++.|.... +..-+.+.+..--+++........++++...+++ +..+.+.|..+
T Consensus 306 ~i~~V~~--~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~F 383 (482)
T KOG0335|consen 306 KILFVNE--MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDF 383 (482)
T ss_pred Eeeeecc--hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHh
Confidence 010011 122223333333211 1111111111101123333333344444444432 22233456677
Q ss_pred CCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee-cCHHHHHHHHhhc
Q 011149 283 EQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD-LPEEIAKELLNKQ 352 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd-v~~~~a~~~i~~~ 352 (492)
+.+...++|++.. +++|+|+..|.|+|+++.|...++ |||+....+.+.+.+||| ...+.++.+.+..
T Consensus 384 r~g~~pvlVaT~V--aaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 384 RNGKAPVLVATNV--AARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEIL 456 (482)
T ss_pred hcCCcceEEEehh--hhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHH
Confidence 8888899999998 799999999999999999987655 999999988888889998 4455666665543
No 137
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.59 E-value=7.4e-07 Score=94.01 Aligned_cols=137 Identities=20% Similarity=0.337 Sum_probs=112.6
Q ss_pred cccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCC---eEEEEecc
Q 011149 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~---~~iLVaT~ 145 (492)
...|+.+|..||..+ ..+.+||||..-....+.|..++. +.|..+-|.|.++.++|...++.|.... +-.|++|-
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 446888888888766 456799999998888888888876 5788999999999999999999998643 55789999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCe--EEEecChh--hHHHHHHHHHHhC
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRSLERDVG 207 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~--e~~~~~~l~~~~~ 207 (492)
+...|||+...++||.||--|+|..=+|..-|+.|.|.+.. ++-|++.. |...+++-+..+.
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999996654 44556654 4455555555443
No 138
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=1.8e-06 Score=95.00 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=114.3
Q ss_pred EEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHH-HHHHHHHHHccCCeEEEEeCChHH
Q 011149 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (492)
Q Consensus 23 ~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~~ 100 (492)
+-.||.|...+-.++.+-|--+. |.+. .+.+...+.+ -.+......|.. ++..+...+..+.|+||-|.|.+.
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~V--v~IP---TnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~ 640 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLDV--VVIP---TNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCCE--EECC---CCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHH
Confidence 44578887666666655553332 2221 1111111111 111222334544 445566666778899999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC---Cc-----CEEEecCCCCChhHH
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NV-----DLIIHYELPNDPETF 171 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~---~v-----~~VI~~~~P~~~~~y 171 (492)
.+.|+..|.. +++..+|+......+-+.+-++=+.| .|-|||++|.||.||. .| =|||-...|.|..--
T Consensus 641 SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID 718 (1112)
T PRK12901 641 SELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVD 718 (1112)
T ss_pred HHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHH
Confidence 9999999985 78888888775555544444443433 4899999999999995 22 378999999999999
Q ss_pred HHHhhhcccCCCCCeEEEecChhh
Q 011149 172 VHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
-|-.||+||.|.+|.+..|++-.|
T Consensus 719 ~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 719 RQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HHHhcccccCCCCCcceEEEEccc
Confidence 999999999999999988887654
No 139
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=1.2e-06 Score=96.03 Aligned_cols=168 Identities=20% Similarity=0.186 Sum_probs=113.4
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH-HHHHHHHccCCeEEEEeCChHH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~~ 100 (492)
++-.||.|...+...+.+-|--+.+.| . ...........-.. ......|..++ ..+...+..+.|+||-|.|.+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~Vv~I--P-TnkP~~R~D~~d~v-y~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDVVVI--P-PNKPLARKDFNDLV-YLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCEEEC--C-CCCCcccccCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 455688888766666666554332222 1 11111111111122 22334555444 4555556678899999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC-------------------------
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~------------------------- 154 (492)
.+.|+..|.+ +++..+|+..-...+-+.+-++=+ .-.|.|||++|.||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 9999999985 788877877644444343433323 335999999999999994
Q ss_pred -------Cc-----CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 155 -------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 155 -------~v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
.| =|||-...|.|..-=-|-.||+||.|.+|.+.+|++-.|
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12 178888999999999999999999999999999887654
No 140
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.55 E-value=4.2e-08 Score=106.44 Aligned_cols=241 Identities=17% Similarity=0.178 Sum_probs=135.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccc-cCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidi~~ 155 (492)
..++||.|||++.|.++++.+.. .+.+..+||+.+...+...++. ..+|||+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 35899999999999999888763 3567889999887766655543 578999996 3333 478888
Q ss_pred cCEEEecC----CCC----ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH----HH--
Q 011149 156 VDLIIHYE----LPN----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE----DV-- 221 (492)
Q Consensus 156 v~~VI~~~----~P~----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~----~~-- 221 (492)
+.+||.=. +.. ++..++..+ .....+++++.+-...+..+.+.+......+.+.... .+
T Consensus 150 l~~lVlDEAd~ml~~gf~~di~~Il~~l-------p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q 222 (629)
T PRK11634 150 LSGLVLDEADEMLRMGFIEDVETIMAQI-------PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 222 (629)
T ss_pred ceEEEeccHHHHhhcccHHHHHHHHHhC-------CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEE
Confidence 88887311 111 122222221 2334567777665555666665554443332221110 00
Q ss_pred ------HHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEe
Q 011149 222 ------LESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (492)
Q Consensus 222 ------~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (492)
.....+.+...+..........|..+ ++++.+.+....+.+..+|.. +++..+.+.+..++.+...++|+
T Consensus 223 ~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd-~~q~~R~~il~~Fr~G~~~ILVA 301 (629)
T PRK11634 223 SYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD-MNQALREQTLERLKDGRLDILIA 301 (629)
T ss_pred EEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCC-CCHHHHHHHHHHHhCCCCCEEEE
Confidence 01122333333333222223333222 222222221111111111110 22222233345567788899999
Q ss_pred ecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH
Q 011149 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE 342 (492)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~ 342 (492)
++. +.+|+|+.+|..+|+++.|...+. +||.......+.+.+|++-++
T Consensus 302 Tdv--~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 302 TDV--AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred cch--HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 998 789999999999999988876554 788877766555556665433
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=98.53 E-value=1.1e-07 Score=73.41 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=49.1
Q ss_pred EEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 011149 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (492)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~ 354 (492)
++++++.|+ +++++|++|+++|+...++..++||+|.+.+++ |||+||++.++++++.+..
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~----S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF----SFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT-HHHHHHHHTT
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE----EEEEECHHHHHHHHHHhcC
Confidence 589999998 899999999999999999999999999999998 8999999999999998764
No 142
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.47 E-value=1.3e-07 Score=99.77 Aligned_cols=255 Identities=13% Similarity=0.142 Sum_probs=140.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccc-ccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~-~Gidi~~v 156 (492)
.++||.|||++.|.++++.++. .+.+..++|+.+...+...++ ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 3799999999999999987763 356788999998877766555 3678999996 232 45788899
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH-----------HHH
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED-----------VLE 223 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~-----------~~~ 223 (492)
.+||.=+.- .+ ..|...+-+.-+.-.....+++++.+-...+..+.+.+...+..+.+..... -..
T Consensus 149 ~~lViDEad~~l~-~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 227 (460)
T PRK11776 149 NTLVLDEADRMLD-MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPD 227 (460)
T ss_pred CEEEEECHHHHhC-cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcH
Confidence 988842211 00 0111111111111123345666666655555555555433322221111000 001
Q ss_pred HHHHHHHHHhccCCccchhhhHH---HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccC
Q 011149 224 SSAEQVVATLNGVHPESVEFFTP---TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300 (492)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~---~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 300 (492)
.....+...+....+.....|.. .++.+.+.+....+.+...|. ++++..+...+..++.+...++|+++. +.+
T Consensus 228 ~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg-~~~~~eR~~~l~~F~~g~~~vLVaTdv--~~r 304 (460)
T PRK11776 228 ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHG-DLEQRDRDQVLVRFANRSCSVLVATDV--AAR 304 (460)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHHHHcCCCcEEEEecc--ccc
Confidence 12223333333333332233322 233333222111111111111 122222333455677888999999998 789
Q ss_pred CCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHHHHHHhh
Q 011149 301 FMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (492)
Q Consensus 301 ~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~ 351 (492)
|+|..++..+|+++.|...+. +||..+....+...+++...+......++.
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 999999999999988865543 788888766655556666554443333433
No 143
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.45 E-value=8.2e-07 Score=97.92 Aligned_cols=121 Identities=20% Similarity=0.384 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcC---CCeEEEEeccccc
Q 011149 74 KRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAA 148 (492)
Q Consensus 74 k~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~---g~~~iLVaT~~~~ 148 (492)
|+.+|..||..+.. +.+||||.......+.|+++|. +.|+..-|-|.+.-+.|+++++.|.. ..+..|+||-+..
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 44455666666644 4799999999999999999998 48999999999999999999999975 4678999999999
Q ss_pred ccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCC--eEEEecChh
Q 011149 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTSS 194 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~ 194 (492)
.|||+-..+.||.||--|+|..=+|.--||.|.|.+. .+|-|++..
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999999999999999999999654 566777764
No 144
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.38 E-value=2.9e-06 Score=91.68 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=90.4
Q ss_pred ccHHHHHHHHHHHHcc--CCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCC---eEEEEecc
Q 011149 72 TSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~---~~iLVaT~ 145 (492)
..|+..|..++..... ..++.+..|.+...+.+.+..+ .++.+..|||.|+..+|+.+++.|.+-. .-.|.+|.
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 3456666666644321 1233333444444444444444 3788999999999999999999998743 33677889
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
+.+.||++-..+.||.||++|+|+.=.|.+.|+-|.|++-.|+++
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999999988777765
No 145
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.36 E-value=4.6e-07 Score=94.81 Aligned_cols=245 Identities=13% Similarity=0.137 Sum_probs=132.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+..++.. ..+|||+|+ +....+++.+++
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5799999999999998876653 3678899999988877766643 678999997 223456788888
Q ss_pred EEEecC----CCCChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHH-H-----------
Q 011149 158 LIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE-D----------- 220 (492)
Q Consensus 158 ~VI~~~----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~-~----------- 220 (492)
+||.=+ +.......+.++-..-+ ....+++++.+- ...+..+.+.+...+..+...... .
T Consensus 150 ~lViDEah~~l~~~~~~~~~~i~~~~~---~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~ 226 (434)
T PRK11192 150 TLILDEADRMLDMGFAQDIETIAAETR---WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRA 226 (434)
T ss_pred EEEEECHHHHhCCCcHHHHHHHHHhCc---cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEe
Confidence 887422 22222233333322212 223445555432 234555555544333222111100 0
Q ss_pred -HHHHHHHHHHHHhccCCccchhhhHH---HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCc
Q 011149 221 -VLESSAEQVVATLNGVHPESVEFFTP---TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296 (492)
Q Consensus 221 -~~~~~~~~~~~~l~~~~~~~~~~f~~---~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (492)
..+.....+...+..........|.. .++.+.+.+....+.+.++|. ++++..+...+..++.|.+.++|+++.
T Consensus 227 ~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g-~~~~~~R~~~l~~f~~G~~~vLVaTd~- 304 (434)
T PRK11192 227 DDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEG-EMVQAKRNEAIKRLTDGRVNVLVATDV- 304 (434)
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecC-CCCHHHHHHHHHHHhCCCCcEEEEccc-
Confidence 01122222223332222222222322 222332222111111111111 122222233445677889999999997
Q ss_pred cccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 297 FSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 297 ~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
+.+|+|..++..+|+++.|...+. +||..+....+.+.++++..+.
T Consensus 305 -~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 305 -AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred -cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 688999999999999888765543 7888876555444566655433
No 146
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.35 E-value=2e-05 Score=86.13 Aligned_cols=126 Identities=18% Similarity=0.161 Sum_probs=78.5
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEE-EEEcCcccHHH-HHHHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
.+..||.|.-.+-..+.+.|--+. +.+ +.+.+...+.+- .+......|.. ++..+...+..+.|+||-|.|.+
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~v--v~I---Ptnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe 435 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLEV--VCI---PTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIE 435 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCE--EEC---CCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHH
Confidence 456788888666556655553322 222 122222222111 12223334544 45556666777889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCC--HHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 100 DADEVSLALTS-IIASEALHGDIS--QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~--~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
..+.|+..|.. +++..+|+..-. ..+-+.+-++=+ .-.|.|||++|.||.||.
T Consensus 436 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~--~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 436 KSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGR--KGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCC--CCcEEEeccccCCCcCee
Confidence 99999999985 888889988632 333333333322 345999999999999983
No 147
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.34 E-value=9e-07 Score=92.28 Aligned_cols=241 Identities=12% Similarity=0.132 Sum_probs=126.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v~ 157 (492)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+...++. ..+|||+|+- -..-+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccccccc
Confidence 4799999999999999876653 3678888998876665554432 5789999982 23457788888
Q ss_pred EEEecCC--------CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH----H-----
Q 011149 158 LIIHYEL--------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE----D----- 220 (492)
Q Consensus 158 ~VI~~~~--------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~----~----- 220 (492)
+||.=.. -.+...+.+.+.. ......++++.+-...+..+.......+..+.+.... .
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~-----~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~ 234 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPP-----ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEEL 234 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCC-----ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEE
Confidence 8884221 1122222222211 1123344555544333444333222222111111000 0
Q ss_pred ---HHHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeec
Q 011149 221 ---VLESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294 (492)
Q Consensus 221 ---~~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (492)
........+...+..........|..+ ++.+.+.+....+..+..|.. +++..+...+..++.+.+.++++++
T Consensus 235 ~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~-~~~~~R~~~l~~F~~g~~~vLVaTd 313 (423)
T PRK04837 235 FYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGD-VAQKKRLRILEEFTRGDLDILVATD 313 (423)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCC-CChhHHHHHHHHHHcCCCcEEEEec
Confidence 001112222222222222222233222 222222221111111111111 2222223344567788899999999
Q ss_pred CccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC
Q 011149 295 SAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 295 ~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~ 341 (492)
. +.+|+|..+|..+|+++.|...++ +||..+....+.+.+|+.-.
T Consensus 314 v--~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 314 V--AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred h--hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHH
Confidence 8 789999999999999998876655 78888876655444555443
No 148
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=98.32 E-value=7.4e-07 Score=90.36 Aligned_cols=242 Identities=17% Similarity=0.209 Sum_probs=149.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----c-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidi~~v 156 (492)
+..+||..+|++.+++|.+.-.+ ++.++.+-|+++.+++---+.. .+.|+|||+- + -+-+=+..+
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatPgrLid~Lenr~lvl~qc 397 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATPGRLIDSLENRYLVLNQC 397 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCchHHHHHHHHHHHHhccC
Confidence 56899999999999999876553 4678888999988876444444 6789999981 1 122223456
Q ss_pred CEEEe------cC-------------CCCChhH-------HHHHhhhccc-CCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 157 DLIIH------YE-------------LPNDPET-------FVHRSGRTGR-AGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 157 ~~VI~------~~-------------~P~~~~~-------y~qr~GR~gR-~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
.+||. .| +|.+... =.-++ |..= ..+.=...++++.+....+..|.+.+...
T Consensus 398 tyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~-~~~~~~~k~yrqT~mftatm~p~verlar~ylr~ 476 (673)
T KOG0333|consen 398 TYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERV-RKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR 476 (673)
T ss_pred ceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHH-HhhcccccceeEEEEEecCCChHHHHHHHHHhhC
Confidence 66661 12 2221111 01110 1110 01222466778888888888998888776
Q ss_pred ceecCCCCH---HHHH---------HHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc--------C
Q 011149 210 FEFVSPPVV---EDVL---------ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS--------G 269 (492)
Q Consensus 210 ~~~~~~p~~---~~~~---------~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~--------~ 269 (492)
+.++.+-+. .+.+ ......+++.|......-+..|..+ ..+.++|+..|-++. +
T Consensus 477 pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~------kk~~d~lAk~LeK~g~~~~tlHg~ 550 (673)
T KOG0333|consen 477 PVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNT------KKGADALAKILEKAGYKVTTLHGG 550 (673)
T ss_pred CeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEec------hhhHHHHHHHHhhccceEEEeeCC
Confidence 655433221 1111 1223344444444322222222221 112234444443332 1
Q ss_pred CCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH
Q 011149 270 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE 342 (492)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~ 342 (492)
.+|..+..+|..++++-..++|+++. +.+|+|+.+|.++|+++.....++ |||+..+...+.+.||+....
T Consensus 551 k~qeQRe~aL~~fr~~t~dIlVaTDv--AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 551 KSQEQRENALADFREGTGDILVATDV--AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecc--cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 44555667788888889999999998 899999999999999998766665 999999999888888887765
No 149
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.32 E-value=3.4e-06 Score=89.52 Aligned_cols=122 Identities=19% Similarity=0.357 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHH--cccceeeecCCCCHHHHHHHHhhhcCCC-eE-EEEeccc
Q 011149 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK-FT-VLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~r~~~~~~F~~g~-~~-iLVaT~~ 146 (492)
.-|..++..+|... ..+.++|+|..|+...+.|...|. +.|...-+.|..+...|..++++|.++. +. .|++|.|
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 45788888888665 456799999999999999999998 4899999999999999999999999764 33 5789999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEE--EecCh
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI--LMFTS 193 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i--~l~~~ 193 (492)
...|+|+...+-||.|||-|+|..=.|..-|+-|.|.+-.++ -|++.
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 999999999999999999999999999999999999665444 44543
No 150
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=98.27 E-value=1.3e-06 Score=89.10 Aligned_cols=244 Identities=14% Similarity=0.176 Sum_probs=135.9
Q ss_pred EEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-C---CCCCc
Q 011149 91 TIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L---DIPNV 156 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-i---di~~v 156 (492)
.|||+||++.|.++.+.|.. .+.+..|.|+|....+++++++ .-+|+|||+ +...+ . ++.+|
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 89999999999999999873 4789999999999999999988 567999999 22221 1 35666
Q ss_pred CEEEecCCC-----CChhHHHHHhhhcc-cCCCCCeEEEecChh------------------h---HHHHHHHHHHhCC-
Q 011149 157 DLIIHYELP-----NDPETFVHRSGRTG-RAGKEGTAILMFTSS------------------Q---RRTVRSLERDVGC- 208 (492)
Q Consensus 157 ~~VI~~~~P-----~~~~~y~qr~GR~g-R~g~~g~~i~l~~~~------------------e---~~~~~~l~~~~~~- 208 (492)
.++|.-..- ...+.+.|-+--.+ +.-+.....++|+.+ + ...++.|.+.++.
T Consensus 342 kcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~ 421 (731)
T KOG0347|consen 342 KCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFR 421 (731)
T ss_pred eEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCcc
Confidence 665532111 11223333222222 222222333333221 0 1123333343333
Q ss_pred -CceecCCCCHHHHHHHHHHHHHHHhc-----------cCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCC
Q 011149 209 -KFEFVSPPVVEDVLESSAEQVVATLN-----------GVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRP 273 (492)
Q Consensus 209 -~~~~~~~p~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~ 273 (492)
++..+.+.+.........+..++--. ...+.....|... +++|.--+..-.+...-+|.. +.|.
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~-M~QK 500 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS-MIQK 500 (731)
T ss_pred CCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHH-HHHH
Confidence 22334444444444433333332200 0001111111111 222221111111111222222 3344
Q ss_pred CCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC
Q 011149 274 PSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~ 341 (492)
.+.++|..++..-..+++++|. |++|+|+..|-|+|++..|-..+- -||+.++.+.+....+++.+
T Consensus 501 qRLknLEkF~~~~~~VLiaTDV--AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 501 QRLKNLEKFKQSPSGVLIATDV--AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred HHHHhHHHHhcCCCeEEEeehh--hhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 4566778888888999999999 899999999999999999876654 69999998887533444433
No 151
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.22 E-value=9.2e-06 Score=89.73 Aligned_cols=122 Identities=21% Similarity=0.346 Sum_probs=100.7
Q ss_pred ccHHHHHHHHHHHHc---------------cCCeEEEEeCChHHHHHHHHHHHc-cc-c--eeeecCCCCHHHHHHHHhh
Q 011149 72 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTS-II-A--SEALHGDISQHQRERTLNG 132 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~---------------~~~~~iVF~~t~~~~~~l~~~l~~-~~-~--~~~lhg~~~~~~r~~~~~~ 132 (492)
.-|+.+|.+||..-. ...++||||.-+...+.+...|.+ .+ . ...|.|.+++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 357778888776532 235899999999999999988875 32 2 3468999999999999999
Q ss_pred hcCC-CeEEE-EecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCe--EEEecCh
Q 011149 133 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTS 193 (492)
Q Consensus 133 F~~g-~~~iL-VaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~ 193 (492)
|.++ .++|| ++|-|..-|+|+...+.||.++--|+|..=+|..-||.|.|++-+ +|-|++.
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 9998 78876 577899999999999999999999999999999999999997654 4444543
No 152
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.21 E-value=3.3e-05 Score=87.94 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=61.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccc---eeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc--CEEEe
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--DLIIH 161 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~---~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v--~~VI~ 161 (492)
.++++|||+++.+..+.+++.|..... ...+.=+++...|.+++++|++++-.||++|..+.+|||+|+- .+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975321 2222223444568899999998888899999999999999964 67876
Q ss_pred cCCCC
Q 011149 162 YELPN 166 (492)
Q Consensus 162 ~~~P~ 166 (492)
..+|.
T Consensus 831 ~kLPF 835 (928)
T PRK08074 831 VRLPF 835 (928)
T ss_pred ecCCC
Confidence 66553
No 153
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.21 E-value=1.6e-05 Score=87.16 Aligned_cols=124 Identities=19% Similarity=0.316 Sum_probs=101.0
Q ss_pred cccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCC--eEEEEeccc
Q 011149 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDV 146 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~--~~iLVaT~~ 146 (492)
...|++.|.-||..+. .+.++|||+...+..+-|..+|.- ++...-|.|...-++|+..+++|.... +..|++|-.
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 3467887777776663 467999999999999999999984 677888999999999999999998753 567889999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCC--CeEEEecChh
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTSS 194 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~--g~~i~l~~~~ 194 (492)
-..|||+-..+.||.||--|++..--|.--|+.|.|++ -+.|-|++..
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999999999987777666666666643 4566667654
No 154
>PTZ00110 helicase; Provisional
Probab=98.18 E-value=9.7e-07 Score=94.71 Aligned_cols=254 Identities=15% Similarity=0.166 Sum_probs=133.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccc-cCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidi~~v~ 157 (492)
..+||.+||++.|.++.+.+.. .+.+..++|+.+...+...+.. ..+|||+|+ .+.. -+++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 4689999999999999888874 2567788998887665555443 478999997 3333 36778888
Q ss_pred EEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC-Cceec-----CCCCH-----------
Q 011149 158 LIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC-KFEFV-----SPPVV----------- 218 (492)
Q Consensus 158 ~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~-~~~~~-----~~p~~----------- 218 (492)
+||.=..- .+ ..|...+-+.-..-++...+++++.+-...++.+.+.+.. ....+ .+...
T Consensus 280 ~lViDEAd~mld-~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 280 YLVLDEADRMLD-MGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE 358 (545)
T ss_pred EEEeehHHhhhh-cchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe
Confidence 87732111 00 0121111111111123345666655533334444333221 11111 10000
Q ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecC
Q 011149 219 EDVLESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295 (492)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (492)
+......+..++..+.. ....+..|..+ ++.+...+....+.+...|. ++++..+...+..++.+.+.++|+++.
T Consensus 359 ~~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg-~~~~~eR~~il~~F~~G~~~ILVaTdv 436 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGWPALCIHG-DKKQEERTWVLNEFKTGKSPIMIATDV 436 (545)
T ss_pred chhHHHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEEC-CCcHHHHHHHHHHHhcCCCcEEEEcch
Confidence 00011122222222221 11222233222 22222221111111100010 112222223345667788899999997
Q ss_pred ccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH-HHHHHHhh
Q 011149 296 AFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE-IAKELLNK 351 (492)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~-~a~~~i~~ 351 (492)
+.+|+|+.+|..+|+++.|...++ |||+.+....+...+||+..+. .+.++++.
T Consensus 437 --~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 437 --ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred --hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 789999999999999998876654 8888887766666778776533 34455444
No 155
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=98.18 E-value=3.2e-06 Score=74.70 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 415 FRSSRSWGSDDEDGFSSSRGGRS-FRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 415 ~~~~~~~g~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
...|++|+++||.+++|+..... ....|+.|+. .+|++..-.. .. ..+....||+|++.||+++|||+
T Consensus 27 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~-----~GH~~~~Cp~---~~--~~~~~~~C~~Cg~~GH~~~~C~~ 95 (148)
T PTZ00368 27 ARPCYKCGEPGHLSRECPSAPGGRGERSCYNCGK-----TGHLSRECPE---AP--PGSGPRSCYNCGQTGHISRECPN 95 (148)
T ss_pred CccCccCCCCCcCcccCcCCCCCCCCcccCCCCC-----cCcCcccCCC---cc--cCCCCcccCcCCCCCcccccCCC
Confidence 46799999999999999876422 2356788884 4454221100 00 01123469999999999999985
No 156
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=98.15 E-value=6.2e-06 Score=72.88 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 415 FRSSRSWGSDDEDGFSSSRGGRS-FRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 415 ~~~~~~~g~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
...|++|++.||.+++|+..... ....|++|+. .+|++..-... . .+++....||+|++.||+++|||+
T Consensus 52 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~-----~GH~~~~C~~~---~-~~~~~~~~C~~Cg~~gH~~~~C~~ 121 (148)
T PTZ00368 52 ERSCYNCGKTGHLSRECPEAPPGSGPRSCYNCGQ-----TGHISRECPNR---A-KGGAARRACYNCGGEGHISRDCPN 121 (148)
T ss_pred CcccCCCCCcCcCcccCCCcccCCCCcccCcCCC-----CCcccccCCCc---c-cccccchhhcccCcCCcchhcCCC
Confidence 35799999999999999876332 2356888884 44542211110 0 012233469999999999999995
No 157
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.14 E-value=1e-05 Score=87.54 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=74.3
Q ss_pred eeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC-CCCChhHHHHHhhhcccCC--CCCeEEEe
Q 011149 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (492)
Q Consensus 114 ~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~-~P~~~~~y~qr~GR~gR~g--~~g~~i~l 190 (492)
+.++|++|...+|..+.--||.|...||+||..++.|||.|.-++|+--| +--++-.|.|++||+||.| ..|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 45679999999999999999999999999999999999999877777555 4567889999999999988 56787777
Q ss_pred cChhhHHHHHHHHHHh
Q 011149 191 FTSSQRRTVRSLERDV 206 (492)
Q Consensus 191 ~~~~e~~~~~~l~~~~ 206 (492)
=-|.. .+++|....
T Consensus 1045 giP~~--kv~rLlts~ 1058 (1330)
T KOG0949|consen 1045 GIPRQ--KVQRLLTSL 1058 (1330)
T ss_pred eCcHH--HHHHHHHHh
Confidence 66643 344444433
No 158
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.11 E-value=1.6e-06 Score=77.32 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCC-C
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTS-SDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASEC-P 491 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~c-p 491 (492)
..|++||+.||..++|| . .=|+.|.-.++. ...-| .-.||+||+.||+++|| |
T Consensus 61 ~~C~nCg~~GH~~~DCP-~-----~iC~~C~~~~H~s~~C~~-----------------~~~C~~Cg~~GH~~~dC~P 115 (190)
T COG5082 61 PVCFNCGQNGHLRRDCP-H-----SICYNCSWDGHRSNHCPK-----------------PKKCYNCGETGHLSRDCNP 115 (190)
T ss_pred cccchhcccCcccccCC-h-----hHhhhcCCCCcccccCCc-----------------ccccccccccCccccccCc
Confidence 67999999999999999 3 556666322222 12223 13489999999999999 5
No 159
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.05 E-value=0.00015 Score=79.45 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=77.4
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEE-EEEcCcccHHHH-HHHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
++..||.|.-.+-.++.+-|--+. +.+. .+.+...+.+- .+......|... +..+...+..+.|+||-|.|.+
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~V--v~IP---TnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe 450 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLEV--TVIP---TNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVE 450 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCcE--EEcC---CCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHH
Confidence 455688887666666665553332 2221 11211111111 112223355544 4455666677889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCC-C-HHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 100 DADEVSLALTS-IIASEALHGDI-S-QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~-~-~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
..+.|+..|.. +++..+|+..- . ..+-+.+-++=+ .-.|-|||++|.||.||.
T Consensus 451 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 451 KSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGR--KGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCC--CCcEEEeccCCCCCcCEe
Confidence 99999999986 78888888862 2 223333333323 335899999999999984
No 160
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.05 E-value=1.5e-05 Score=80.48 Aligned_cols=102 Identities=19% Similarity=0.371 Sum_probs=88.8
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC-CeEE-EEecccccccCCCCCcCEEEecC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDVAARGLDIPNVDLIIHYE 163 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~i-LVaT~~~~~Gidi~~v~~VI~~~ 163 (492)
+..+.+|||......+.|...+.+ .+...-+.|..+...|+...+.|... ++.| +++-.++..||++...+.||...
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 457999999999999999999985 78999999999999999999999864 4554 45567889999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCCCCeEE
Q 011149 164 LPNDPETFVHRSGRTGRAGKEGTAI 188 (492)
Q Consensus 164 ~P~~~~~y~qr~GR~gR~g~~g~~i 188 (492)
+||++.-++|.--|+.|.|.+..+.
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~ 595 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVF 595 (689)
T ss_pred ecCCCceEEechhhhhhccccceee
Confidence 9999999999999999988665433
No 161
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.04 E-value=4.7e-05 Score=85.27 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=57.8
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc-cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC--CcCEEEec
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--NVDLIIHY 162 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~--~v~~VI~~ 162 (492)
..++++||++++.+..+.+++.|... +.+ ...|.-. .+.+++++|++++-.||++|..+.+|||+| +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 34689999999999999999998742 333 3344211 246689999998888999999999999997 34555655
Q ss_pred CCC
Q 011149 163 ELP 165 (492)
Q Consensus 163 ~~P 165 (492)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 554
No 162
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.01 E-value=1.5e-05 Score=80.06 Aligned_cols=244 Identities=16% Similarity=0.191 Sum_probs=147.3
Q ss_pred eEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc---cccCCCCC
Q 011149 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA---ARGLDIPN 155 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~---~~Gidi~~ 155 (492)
-+||..||++.|.+|.+.+.. .+.+..+-|+.+.+ +-++.|++...+|||+|+ ++ +..+|+.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 479999999999998877653 35678888986554 346777778889999998 33 33566667
Q ss_pred cCEEEe--------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH------H
Q 011149 156 VDLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED------V 221 (492)
Q Consensus 156 v~~VI~--------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~------~ 221 (492)
+.++|. +++-.+....+-+.-+--|.| |++.+....+..|.+.-..++..+.+..... .
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG-------LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L 230 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG-------LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSL 230 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccc-------cccchhhHHHHHHHHhhccCceeeeecccccccCchhh
Confidence 887773 223344555555554444443 6777776667777665444443322211110 0
Q ss_pred --------HHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc---------C-CCCCCCCcccccCC
Q 011149 222 --------LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS---------G-FSRPPSSRSLINHE 283 (492)
Q Consensus 222 --------~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~---------~-~~~~~~~~~l~~~~ 283 (492)
...+...+++.|.....+....|-++.. ..+-+...+..+. | ++++.+.+.+..+.
T Consensus 231 ~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCa------sVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~ 304 (567)
T KOG0345|consen 231 ALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCA------SVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR 304 (567)
T ss_pred cceeeEecHHHHHHHHHHHHhccccccEEEEecCcc------hHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH
Confidence 0223344444444432222222211100 0111122222221 1 23333444555555
Q ss_pred CCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHHHHHHhh
Q 011149 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (492)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~ 351 (492)
...-.+++.+|. +++|+|+.+|..+|..+.|..++. .||+......+.+.+|+...++...+++..
T Consensus 305 ~~~~~vl~~TDV--aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 305 KLSNGVLFCTDV--AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred hccCceEEeehh--hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 555678889998 899999999999999999987765 799999888877667777666666777754
No 163
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.98 E-value=0.00012 Score=80.81 Aligned_cols=78 Identities=26% Similarity=0.411 Sum_probs=58.6
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHccc-ceeeecCCCCHHHHHHHHhhhc----CCCeEEEEecccccccCCCCC--cCE
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPN--VDL 158 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~~-~~~~lhg~~~~~~r~~~~~~F~----~g~~~iLVaT~~~~~Gidi~~--v~~ 158 (492)
...+.+|||+++.+..++++..|.... .....++. ..+.++++.|+ .++-.||++|..+.+|||+|+ +++
T Consensus 532 ~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 532 EKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 345579999999999999999987432 22344554 34677887776 466789999999999999986 678
Q ss_pred EEecCCCC
Q 011149 159 IIHYELPN 166 (492)
Q Consensus 159 VI~~~~P~ 166 (492)
||...+|.
T Consensus 609 vII~kLPF 616 (697)
T PRK11747 609 VIITKIPF 616 (697)
T ss_pred EEEEcCCC
Confidence 88777663
No 164
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.94 E-value=0.00031 Score=77.52 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=73.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcccc--eeeecCCCCHHHHHHHHhhhcCCCe-EEEEecccccccCCCCCc--CEEEec
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIHY 162 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~~--~~~lhg~~~~~~r~~~~~~F~~g~~-~iLVaT~~~~~Gidi~~v--~~VI~~ 162 (492)
++++|||+++.+..+.+++.+..... ....++.. .+...+++|+...- .++|+|..+++|||+|+- ..||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 46899999999999999999986432 44555553 44578888887654 899999999999999865 567766
Q ss_pred CCCC------------------------------ChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 163 ELPN------------------------------DPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 163 ~~P~------------------------------~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
.+|. -...+.|-+||.=|.-..--+++++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 6653 23444888999988543333333333
No 165
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.91 E-value=0.00015 Score=79.72 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=72.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc------cceeeecCCCCHH---------------------HHHHHHhhhcC-CCeE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 139 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~---------------------~r~~~~~~F~~-g~~~ 139 (492)
..+++|||.++..|..+++.|.+. ...+++++..... ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 379999999999999999888643 2344555543221 23478899976 6889
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccC
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (492)
|||.++.+..|.|.|.+++++...+-.+. .++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999998877765654 589999999994
No 166
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.91 E-value=5e-05 Score=81.72 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=75.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccc------ceeeecCCCCHHHHHHHHhhhcC--CCeEEEEecccccccCCCCCcCEE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~------~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
-.|+||||.+..+|+.+.+.|.+.+ .+..+.++-.+.+ ..++.|.. .--+|.|+.+++..|||+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 3589999999999999999998643 3677788754443 33555544 335688999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccC
Q 011149 160 IHYELPNDPETFVHRSGRTGRA 181 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~ 181 (492)
|.+..-.|...|.||+||.-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999884
No 167
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.90 E-value=9.3e-05 Score=84.24 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=101.1
Q ss_pred cHHHHHHHHH-HHH-ccCC--eEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC--CeEEEEecc
Q 011149 73 SKRTILSDLI-TVY-AKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (492)
Q Consensus 73 ~k~~~l~~ll-~~~-~~~~--~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~ 145 (492)
.|...+.+++ ... .... ++|||+......+.+...+.. .+....++|.++.+.|...+++|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5777777777 333 3445 899999999999999999986 46899999999999999999999985 455678889
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
+...|+|+...++||+||+.|++....|...|+.|.|.+..+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999866654443
No 168
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.90 E-value=0.00022 Score=79.44 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=66.8
Q ss_pred EEEeCChHHHHHHHHHHHcc-------cceeeecCCCCHHHHHHHHhhh----------------------cC----CCe
Q 011149 92 IVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGF----------------------RQ----GKF 138 (492)
Q Consensus 92 iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~r~~~~~~F----------------------~~----g~~ 138 (492)
+|-+++++.+..++..|... +.+.++|+..+...|..+++.+ ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 67778888888888877632 4477899998777776655443 11 356
Q ss_pred EEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCC
Q 011149 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (492)
Q Consensus 139 ~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (492)
.|+|+|++++.|+|+ +.+++|- -|.+..+.+|++||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 799999999999998 4565543 36678899999999999763
No 169
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=97.89 E-value=4.3e-05 Score=83.91 Aligned_cols=249 Identities=13% Similarity=0.175 Sum_probs=146.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-------cc--cccCCCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VA--ARGLDIP 154 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------~~--~~Gidi~ 154 (492)
.-+||.|+|++.+.+|.+.+.. .+.+++.+|+...+++...+ ++| ..|+|||+ ++ .+=.+|-
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiael---kRg-~eIvV~tpGRmiD~l~~n~grvtnlr 514 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAEL---KRG-AEIVVCTPGRMIDILCANSGRVTNLR 514 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHH---hcC-CceEEeccchhhhhHhhcCCcccccc
Confidence 3579999999999999998874 36788889987777665554 446 78999998 11 2224455
Q ss_pred CcCEEEe------cCC---CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHH
Q 011149 155 NVDLIIH------YEL---PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDV 221 (492)
Q Consensus 155 ~v~~VI~------~~~---P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~ 221 (492)
.+++|+. +|+ |.. ...+|.+ |+- ...++++.+....+..+.+....++..+.+--. .++
T Consensus 515 R~t~lv~deaDrmfdmgfePq~-~~Ii~nl-rpd------rQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V 586 (997)
T KOG0334|consen 515 RVTYLVLDEADRMFDMGFEPQI-TRILQNL-RPD------RQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEV 586 (997)
T ss_pred ccceeeechhhhhheeccCccc-chHHhhc-chh------hhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccc
Confidence 5566662 333 332 3377877 443 446777777777788877665544332211110 000
Q ss_pred ---------HHHHHHHHHHHhccCC-ccchhhhH---HHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEE
Q 011149 222 ---------LESSAEQVVATLNGVH-PESVEFFT---PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288 (492)
Q Consensus 222 ---------~~~~~~~~~~~l~~~~-~~~~~~f~---~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~ 288 (492)
...+..++.+.|.... ......|. ..+..+++.+-...+...++|.- .++..+...+..++.+.+.
T Consensus 587 ~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGg-v~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 587 TQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGG-VDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred eEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCC-CchHHHHhHHHHHhccCce
Confidence 0122222222222110 11111121 11233333333333333334432 4444444445678899999
Q ss_pred EEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec-CHHHHHHHHhhc
Q 011149 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL-PEEIAKELLNKQ 352 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv-~~~~a~~~i~~~ 352 (492)
|+++++. +++|+++.++.-+|+++.|..-++ .|++.+...-+.+.+|++. ..+++..+.++.
T Consensus 666 LLvaTsv--varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 666 LLVATSV--VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEehhh--hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999998 799999999999999998876655 6777777665545566666 344555555544
No 170
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.86 E-value=9e-05 Score=75.16 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcC-CCeEEEEeccccccc
Q 011149 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDVAARG 150 (492)
Q Consensus 73 ~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~-g~~~iLVaT~~~~~G 150 (492)
.|..+..-|++.+. .+.++|||..+.-...+.+-.|.+ -.++|..+|.+|.++++.|+- ..++.++-+.|....
T Consensus 527 ~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtS 602 (776)
T KOG1123|consen 527 NKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTS 602 (776)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCcc
Confidence 45666666776663 467999999888777776666644 458999999999999999985 467888999999999
Q ss_pred CCCCCcCEEEecCCC-CChhHHHHHhhhcccCC
Q 011149 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAG 182 (492)
Q Consensus 151 idi~~v~~VI~~~~P-~~~~~y~qr~GR~gR~g 182 (492)
||+|..+++|+..-- -+..+-.||.||.-|+-
T Consensus 603 iDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 603 IDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999986543 46677789999999975
No 171
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.85 E-value=0.0001 Score=74.63 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHHcc---CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC-CeEE-EEeccc
Q 011149 73 SKRTILSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDV 146 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~---~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~i-LVaT~~ 146 (492)
.|.++|..-|..+.+ .-+.|||..-....+.+.-.|.+ ++.++-|.|.|++.+|..+++.|++. .+.| ||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 466666555544422 34789999999999999888886 89999999999999999999999985 4554 566677
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCC--CCCeEEEecCh
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~ 193 (492)
...-+|+...++|++.|+-|++..-+|.--|..|.| ++-.++.|+-.
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 777789999999999999999999999888888887 45566666544
No 172
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.82 E-value=1.9e-05 Score=76.87 Aligned_cols=247 Identities=13% Similarity=0.124 Sum_probs=136.5
Q ss_pred HHHHHHHccC---CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc----
Q 011149 79 SDLITVYAKG---GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---- 146 (492)
Q Consensus 79 ~~ll~~~~~~---~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~---- 146 (492)
..+|+.+.++ .-++||+||++.+-++++.+.- .+++.++.|+++.-.+...+.+ .-.++|||+-
T Consensus 63 LPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatPGRlad 138 (442)
T KOG0340|consen 63 LPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATPGRLAD 138 (442)
T ss_pred HHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCcccccc
Confidence 3455555432 3589999999999999998862 4789999999987777766665 7789999982
Q ss_pred -ccccC--CC---CCcCE-EE-------ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC---C
Q 011149 147 -AARGL--DI---PNVDL-II-------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC---K 209 (492)
Q Consensus 147 -~~~Gi--di---~~v~~-VI-------~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~---~ 209 (492)
+.-.. +. ..+.+ |+ .-++|.+.+...+-. .+....+|++..-...++.+...--. .
T Consensus 139 ~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l-------P~~RQtLlfSATitd~i~ql~~~~i~k~~a 211 (442)
T KOG0340|consen 139 HLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL-------PKPRQTLLFSATITDTIKQLFGCPITKSIA 211 (442)
T ss_pred ccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC-------CCccceEEEEeehhhHHHHhhcCCcccccc
Confidence 11110 10 11112 22 333444444443322 12245556655544444444322111 1
Q ss_pred ceecC---CCCHHH-----------HHHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCC
Q 011149 210 FEFVS---PPVVED-----------VLESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSR 272 (492)
Q Consensus 210 ~~~~~---~p~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~ 272 (492)
+++.. .+..+. +.+..+-.++...+......+-.|..+ ++.|.-.+..-.+...-+|.. +.|
T Consensus 212 ~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~-m~Q 290 (442)
T KOG0340|consen 212 FELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQ-MPQ 290 (442)
T ss_pred eEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhc-chH
Confidence 22211 111111 111222222222222111122222211 111111111111111222222 344
Q ss_pred CCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee
Q 011149 273 PPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD 339 (492)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd 339 (492)
..+..+|..++.+-+++++++|. |.+|+|+..|--++|++.|..+++ +||+..+...+.+.|+|.
T Consensus 291 ~eR~~aLsrFrs~~~~iliaTDV--AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt 359 (442)
T KOG0340|consen 291 KERLAALSRFRSNAARILIATDV--ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT 359 (442)
T ss_pred HHHHHHHHHHhhcCccEEEEech--hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEec
Confidence 44555677889999999999999 899999999999999999988776 789888888877778886
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.78 E-value=7.7e-05 Score=67.35 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=71.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccc---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--cccccCCCCC--cCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidi~~--v~~V 159 (492)
.++.+|||+++.+..+.+.+.+.... ....+.- ....+..+++.|+.+.-.||+++. .+.+|||+|+ +..|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 35899999999999999999988532 2223332 356788999999999999999999 9999999995 6678
Q ss_pred EecCCCC----Ch--------------------------hHHHHHhhhcccCCCCCeEEEecCh
Q 011149 160 IHYELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 160 I~~~~P~----~~--------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
|...+|. ++ ....|-+||.-|....--++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8888774 21 1126778999887655445555554
No 174
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.75 E-value=0.00016 Score=77.02 Aligned_cols=122 Identities=20% Similarity=0.319 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCC-e-EEEEeccccc
Q 011149 73 SKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK-F-TVLVATDVAA 148 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~-~-~iLVaT~~~~ 148 (492)
.|...|..||..+.+ +.++|||..-....+.|...|.. .+...-|.|...-..|+.+++.|...+ + -.|++|-+..
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 467778888877644 47999999988888888888874 788889999999999999999998753 3 3588999999
Q ss_pred ccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCC--CeEEEecChh
Q 011149 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTSS 194 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~--g~~i~l~~~~ 194 (492)
-|||+...++||.+|+-.+|-.=.|.--|+.|.|.+ -+++.|++..
T Consensus 841 ~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred ceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 999999999999999988887888888888898844 4566667654
No 175
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.74 E-value=0.00016 Score=76.11 Aligned_cols=121 Identities=17% Similarity=0.307 Sum_probs=103.3
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCe-EEEEeccccc
Q 011149 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAA 148 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~-~iLVaT~~~~ 148 (492)
..|+.+|..||..+. .+.++|+|+...+..+.+.++|. +.+...-|.|.....+|..++..|..-++ -+|++|-+..
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 357778888887763 46799999999999999999998 47889999999999999999999987554 4588999999
Q ss_pred ccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCe--EEEecC
Q 011149 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFT 192 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~ 192 (492)
.|||+...+.||.||--|++..-.|...|+.|.|.+-. +|-|++
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc
Confidence 99999999999999999999999999999999986544 444444
No 176
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.73 E-value=0.00036 Score=76.26 Aligned_cols=121 Identities=20% Similarity=0.312 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCC---eEEEEecc
Q 011149 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~---~~iLVaT~ 145 (492)
..-|+++|..+|..+. .+.++|.||........+..+|. +.+...-+.|.....+|-..++.|..-. +.+|.+|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 3568999999987774 46799999999888888888887 4778888999999999999999998643 45789999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEec
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 191 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~ 191 (492)
....|+|+...+.||.||.-|++....|+--|+.|.|.+-.+-++.
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999999999999999999665555543
No 177
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=97.66 E-value=7.9e-05 Score=84.03 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=70.5
Q ss_pred cHHHHH-HHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-
Q 011149 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 145 (492)
Q Consensus 73 ~k~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~- 145 (492)
-|..+. ..++..+....+++|.+||+..|++.++.+.+. +.+..+++.++..++.++++.+++|+.+|||+|.
T Consensus 484 GKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ 563 (926)
T TIGR00580 484 GKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK 563 (926)
T ss_pred cHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH
Confidence 454433 333444445689999999999999999988752 4677899999999999999999999999999997
Q ss_pred cccccCCCCCcCEEEe
Q 011149 146 VAARGLDIPNVDLIIH 161 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~ 161 (492)
.+...+.+.++.+||.
T Consensus 564 ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 564 LLQKDVKFKDLGLLII 579 (926)
T ss_pred HhhCCCCcccCCEEEe
Confidence 4445677889998884
No 178
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.64 E-value=0.0014 Score=70.70 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=61.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccc-eeeecCCCCHHHHHHHHhhhcCC----CeEEEEecccccccCCC--------
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARGLDI-------- 153 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~r~~~~~~F~~g----~~~iLVaT~~~~~Gidi-------- 153 (492)
..++++|.+.+....+.+++.|...+. ...+.|+.+ .+...+++|+.. .-.||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 457999999999999999999986543 344556542 446678888873 67899999999999999
Q ss_pred --CCcCEEEecCCCC
Q 011149 154 --PNVDLIIHYELPN 166 (492)
Q Consensus 154 --~~v~~VI~~~~P~ 166 (492)
..+++||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3578899877763
No 179
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.54 E-value=4.7e-05 Score=87.70 Aligned_cols=231 Identities=13% Similarity=0.100 Sum_probs=126.2
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-cccccCCCCCcCEE
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGLDIPNVDLI 159 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~~Gidi~~v~~V 159 (492)
....+++|.+||+..|.+++..+.+. +.+..+++..+..++.++++.++++..+|||+|+ .+...+.+.++.+|
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 45679999999999999999988742 4577899999999999999999999999999997 44445667788887
Q ss_pred EecCCC-CChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHHH--H-------H-HHHHH
Q 011149 160 IHYELP-NDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVED--V-------L-ESSAE 227 (492)
Q Consensus 160 I~~~~P-~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~~--~-------~-~~~~~ 227 (492)
|.=..- ... ....++-. -.....+++++.+- .+.+ .+......++..+..|.... + . .....
T Consensus 727 VIDEahrfG~-~~~e~lk~----l~~~~qvLl~SATpiprtl-~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~ 800 (1147)
T PRK10689 727 IVDEEHRFGV-RHKERIKA----MRADVDILTLTATPIPRTL-NMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE 800 (1147)
T ss_pred EEechhhcch-hHHHHHHh----cCCCCcEEEEcCCCCHHHH-HHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHH
Confidence 731110 011 11222211 12345566666552 2222 22222222333322221110 0 0 01112
Q ss_pred HHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc----------CCCCCCCCcccccCCCCeEEEEEeecCcc
Q 011149 228 QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS----------GFSRPPSSRSLINHEQGWVTLQLTRDSAF 297 (492)
Q Consensus 228 ~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 297 (492)
.+...+... ..+-.|....+. .+.++..|..+. ++++..+.+.+..+..+.+.++|+++.
T Consensus 801 ~il~el~r~--gqv~vf~n~i~~------ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI-- 870 (1147)
T PRK10689 801 AILREILRG--GQVYYLYNDVEN------IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI-- 870 (1147)
T ss_pred HHHHHHhcC--CeEEEEECCHHH------HHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch--
Confidence 223333221 112222111110 111222222221 122222334455677888999999987
Q ss_pred ccCCCChhHHHHHHh-----hhCCCCcCccccEEEeecCc
Q 011149 298 SRGFMSARSVMGFLS-----DVYPTAADEIGKIHIIADDR 332 (492)
Q Consensus 298 ~~~~~~~~~i~~~i~-----~~~~~~~~~ig~i~~~~~~~ 332 (492)
..+|+|..++..+|. +..+.....+||+.+....+
T Consensus 871 ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g 910 (1147)
T PRK10689 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 (1147)
T ss_pred hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce
Confidence 688999999888773 22222222378887765543
No 180
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.00022 Score=75.39 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=129.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-cc------cC-CCCCcC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-AR------GL-DIPNVD 157 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-~~------Gi-di~~v~ 157 (492)
....+||.+|+++.+++.+..|.. .+.+..++++.+..++..++..+..+..+||++|+-. .. .+ ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 457899999999999988888875 7888999999999999999999999999999999732 11 12 445677
Q ss_pred EEEecCC----CC--C-hhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceec---CC--CCH----HH
Q 011149 158 LIIHYEL----PN--D-PETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFV---SP--PVV----ED 220 (492)
Q Consensus 158 ~VI~~~~----P~--~-~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~---~~--p~~----~~ 220 (492)
+||.-.. .| + ...| .+++..-+. .+...+++++.+ .....+.+.+.+......+ .. |.. ..
T Consensus 130 ~iViDEaH~i~~~g~~fr~~~-~~l~~l~~~-~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~ 207 (470)
T TIGR00614 130 LIAVDEAHCISQWGHDFRPDY-KALGSLKQK-FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRR 207 (470)
T ss_pred EEEEeCCcccCccccccHHHH-HHHHHHHHH-cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEe
Confidence 7663111 11 1 1222 222221111 122334444433 2223333444433211100 00 000 00
Q ss_pred HHHHHHHHHHHHhccC-CccchhhhH---HHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCc
Q 011149 221 VLESSAEQVVATLNGV-HPESVEFFT---PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296 (492)
Q Consensus 221 ~~~~~~~~~~~~l~~~-~~~~~~~f~---~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (492)
........+...+... .......|. ..++.+.+.+....+.++..|. ++++..+...+..+..+.+.++++++.
T Consensus 208 ~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~-~l~~~eR~~i~~~F~~g~~~vLVaT~~- 285 (470)
T TIGR00614 208 KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHA-GLEISARDDVHHKFQRDEIQVVVATVA- 285 (470)
T ss_pred CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeC-CCCHHHHHHHHHHHHcCCCcEEEEech-
Confidence 0001122222222211 111111221 1222222222111111111111 122222222334566788899999986
Q ss_pred cccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec
Q 011149 297 FSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 297 ~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv 340 (492)
...|+|..+|..+|+...|...+. +||..+....+...+|++.
T Consensus 286 -~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~ 332 (470)
T TIGR00614 286 -FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAP 332 (470)
T ss_pred -hhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEech
Confidence 578999999999999888865543 7888776554433444443
No 181
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=97.53 E-value=2.8e-05 Score=48.34 Aligned_cols=17 Identities=41% Similarity=1.257 Sum_probs=15.9
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.|+.|++.|||.+|||.
T Consensus 10 ~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 10 VCHRCGQKGHWIQDCPT 26 (32)
T ss_pred EeecCCCCCccHhHCCC
Confidence 49999999999999994
No 182
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.52 E-value=0.0012 Score=63.77 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=6.1
Q ss_pred eecCHHHHHHHHh
Q 011149 338 FDLPEEIAKELLN 350 (492)
Q Consensus 338 fdv~~~~a~~~i~ 350 (492)
.|+.+..+.++-.
T Consensus 284 ~~~Re~Taski~k 296 (465)
T KOG3973|consen 284 MDRRERTASKIHK 296 (465)
T ss_pred cchhhhhhhhhcc
Confidence 4455555544433
No 183
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.48 E-value=0.00013 Score=80.43 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=71.5
Q ss_pred cHHH-HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 73 SKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 73 ~k~~-~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
-|.. .+..++..+..+.+++|.+||+..|.++++.+++ .+.+..+||+++..+|.++++.+.+|+.+|+|+|..
T Consensus 294 GKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 373 (681)
T PRK10917 294 GKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHA 373 (681)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHH
Confidence 4443 2333444455667999999999999999988874 367899999999999999999999999999999974
Q ss_pred -ccccCCCCCcCEEEe
Q 011149 147 -AARGLDIPNVDLIIH 161 (492)
Q Consensus 147 -~~~Gidi~~v~~VI~ 161 (492)
+...+.+.++.+||.
T Consensus 374 ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 374 LIQDDVEFHNLGLVII 389 (681)
T ss_pred HhcccchhcccceEEE
Confidence 444577889998884
No 184
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.45 E-value=0.0048 Score=68.58 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=57.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-c-------ceeeecCCCCHHHHHHHHhhhcC----CCeEEEEec--ccccccCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-I-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLDI 153 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~-------~~~~lhg~~~~~~r~~~~~~F~~----g~~~iLVaT--~~~~~Gidi 153 (492)
++.+|||+++....+.+++.+... + ....+-+ -...++++++++|+. +.-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 578999999999999998887641 1 1122212 112578889999964 345699998 889999999
Q ss_pred CC--cCEEEecCCCC
Q 011149 154 PN--VDLIIHYELPN 166 (492)
Q Consensus 154 ~~--v~~VI~~~~P~ 166 (492)
++ ...||..++|.
T Consensus 601 ~~~~~r~ViivGlPf 615 (705)
T TIGR00604 601 CDDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCCcEEEEEccCC
Confidence 86 57888888875
No 185
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.44 E-value=8e-05 Score=78.89 Aligned_cols=245 Identities=15% Similarity=0.161 Sum_probs=122.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v~ 157 (492)
.++||.++|++.+.++++.+.. .+.+..++|+.+...+.+ .+.....+|||+|+- ....+.+.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---QLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999999887763 356788899877655433 334456789999972 23346677888
Q ss_pred EEEecCCC--CChhHHHHHhhhcccCC--CCCeEEEecChhhHHHHHHHHHHhCCCceecCC-------CCHHH----H-
Q 011149 158 LIIHYELP--NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP-------PVVED----V- 221 (492)
Q Consensus 158 ~VI~~~~P--~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~-------p~~~~----~- 221 (492)
+||.=+.- .+ ..|..++-|.-|.- .....+++++.+-...+..+.+.+......+.+ +.... +
T Consensus 240 ~lViDEah~l~~-~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 318 (475)
T PRK01297 240 VMVLDEADRMLD-MGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA 318 (475)
T ss_pred eEEechHHHHHh-cccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec
Confidence 87741110 00 11222222222211 112345555554333333333333222111100 00000 0
Q ss_pred HHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccc
Q 011149 222 LESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 298 (492)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 298 (492)
.......+...+.......+..|... ++.+.+.+....+.++..+. ++++..+...+..++.|...++++++. .
T Consensus 319 ~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g-~~~~~~R~~~~~~Fr~G~~~vLvaT~~--l 395 (475)
T PRK01297 319 GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSG-DVPQHKRIKTLEGFREGKIRVLVATDV--A 395 (475)
T ss_pred chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEEC-CCCHHHHHHHHHHHhCCCCcEEEEccc--c
Confidence 00111122222222222222233221 22222211111000000000 011111222344567788999999987 6
Q ss_pred cCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec
Q 011149 299 RGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 299 ~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv 340 (492)
..|+|..++..+|+...|....+ +||..+....+...+|++-
T Consensus 396 ~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~ 441 (475)
T PRK01297 396 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGE 441 (475)
T ss_pred ccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecH
Confidence 88999999999999888766554 7888887665544455543
No 186
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00014 Score=70.67 Aligned_cols=66 Identities=17% Similarity=0.388 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSF--RSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECP 491 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp 491 (492)
..|++|++.||..++|+...... .-.++.|+.. +|+ + ......-.......||+||+.|||++|||
T Consensus 93 ~~c~~C~~~gH~~~~c~~~~~~~~~~~~~~~c~~~-----gh~--~---~~~~~~~~~~~~~~Cy~Cg~~GH~s~~C~ 160 (261)
T KOG4400|consen 93 AACFNCGEGGHIERDCPEAGKEGSSETSCYSCGKT-----GHR--G---CPDADPVDGPKPAKCYSCGEQGHISDDCP 160 (261)
T ss_pred hhhhhCCCCccchhhCCcccCcccccceeeccCCC-----ccc--c---CcccccccCCCCCccCCCCcCCcchhhCC
Confidence 56889999999999998765433 2345566633 333 1 00000000111144999999999999998
No 187
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.39 E-value=0.0015 Score=71.11 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=97.9
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc----c-------------------cceeeecCCCCHHHHH
Q 011149 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I-------------------IASEALHGDISQHQRE 127 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~----~-------------------~~~~~lhg~~~~~~r~ 127 (492)
..|+.+|.+||..- .-+.++|||..+....+.|..+|.. . .....|.|.....+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 35666777777654 3467999999999888888877752 1 1245578889999999
Q ss_pred HHHhhhcCCC----eEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 128 RTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 128 ~~~~~F~~g~----~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
.+.+.|.+-. ...||+|-+.+.|||+-..+-||.||..|++.--+|-+=|+-|.|.+.-||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999998632 34799999999999999999999999999999999999999999988777765
No 188
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.39 E-value=0.0012 Score=71.59 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=12.4
Q ss_pred ccc-EEEeecCccceeEeecCHHHHHH
Q 011149 322 IGK-IHIIADDRVQGAVFDLPEEIAKE 347 (492)
Q Consensus 322 ig~-i~~~~~~~~~gs~fdv~~~~a~~ 347 (492)
.|. |-+.|+- --+++..+.|..
T Consensus 1075 dgq~IV~VDdW----IklqIshEaAAc 1097 (1282)
T KOG0921|consen 1075 DGQGIVRVDDW----IKLQISHEAAAC 1097 (1282)
T ss_pred cCcceEEeece----eeEeccHHHHHH
Confidence 344 5544443 457787776654
No 189
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.39 E-value=0.00019 Score=76.78 Aligned_cols=250 Identities=15% Similarity=0.169 Sum_probs=128.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidi~~v 156 (492)
..++||.+||++.|.++.+.+.. .+.+..+.|+.+..++...+ +. ..+|||+|+ .+ ...+++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l---~~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRI---QQ-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 35799999999999988777653 24556667665544443333 22 468999996 22 346778888
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHH--------H
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDV--------L 222 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~--------~ 222 (492)
.+||.=+.- .+ ..|...+-+.-+.- +...+++++.+-...++.+.+.+...+..+..... ..+ .
T Consensus 272 ~~lViDEad~ml~-~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~ 349 (518)
T PLN00206 272 SVLVLDEVDCMLE-RGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET 349 (518)
T ss_pred eEEEeecHHHHhh-cchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc
Confidence 887732210 00 01211111111111 12345666655444555555554433322111100 000 0
Q ss_pred HHHHHHHHHHhccCC--ccchhhhHHHHHHHHhhhCHHHHHHHHHHHcC---------CCCCCCCcccccCCCCeEEEEE
Q 011149 223 ESSAEQVVATLNGVH--PESVEFFTPTAQRLIEEKGTDALAAALAQLSG---------FSRPPSSRSLINHEQGWVTLQL 291 (492)
Q Consensus 223 ~~~~~~~~~~l~~~~--~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~---------~~~~~~~~~l~~~~~~~~~~~~ 291 (492)
......+.+.+.... ......|..+. ...+.++..|....+ +++..+...+..++.|.+.+++
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~------~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILV 423 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSR------LGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIV 423 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCc------hhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 011122222222111 01112222110 111223333322222 1221222334556788899999
Q ss_pred eecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH-HHHHHHhh
Q 011149 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE-IAKELLNK 351 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~-~a~~~i~~ 351 (492)
+++. +.+|+|..++..+|+++.|...++ +||..+....+...+|++-.+. .+.++++.
T Consensus 424 aTdv--l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~ 486 (518)
T PLN00206 424 ATGV--LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVAL 486 (518)
T ss_pred EecH--hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHH
Confidence 9997 789999999999999998876554 8888887766655666654332 33444443
No 190
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.34 E-value=0.00084 Score=74.57 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHHc----------cCCeEEEEeCChHHHHHHHHHHHc
Q 011149 71 ATSKRTILSDLITVYA----------KGGKTIVFTQTKRDADEVSLALTS 110 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~----------~~~~~iVF~~t~~~~~~l~~~l~~ 110 (492)
...|+..|.++|+.+. .+.++||||+.+.+|.+|.+.|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3456666666665432 235799999999999999998865
No 191
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00016 Score=68.43 Aligned_cols=246 Identities=12% Similarity=0.110 Sum_probs=134.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc-cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidi~~ 155 (492)
..-++||..||++.+.++.+.+.. .+.+.+.-|+.+-.+-.+.++ - ...++..|+ .. -+-+...+
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld---~-G~hvVsGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD---Y-GQHVVSGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc---c-cceEeeCCCchHHHHHHhccccccc
Confidence 346899999999999998887763 245555566655544444444 2 457888887 22 34466677
Q ss_pred cCEEEecCC--CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH---H-HH-------
Q 011149 156 VDLIIHYEL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE---D-VL------- 222 (492)
Q Consensus 156 v~~VI~~~~--P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~---~-~~------- 222 (492)
|.++|.-.. --+. .|-+.+=+.-|.-.++..++|++.+-...+.++-+++..++.++.....+ | +.
T Consensus 170 vkmlVLDEaDemL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred eeEEEeccHHHHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 777664221 1111 44455556667667788999988876665555555544444332221111 1 10
Q ss_pred -HHHHHHHHHHhc-cCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCcc
Q 011149 223 -ESSAEQVVATLN-GVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 297 (492)
Q Consensus 223 -~~~~~~~~~~l~-~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 297 (492)
+.|.-+.+..|. .+...+...|-.+ +.=|-+......+...-+|.. +++..+..-+..++.+..++++.++.+
T Consensus 249 ~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGD-m~qkERd~im~dFRsg~SrvLitTDVw- 326 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MEQKERDKIMNDFRSGKSRVLITTDVW- 326 (400)
T ss_pred hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCC-cchhHHHHHHHHhhcCCceEEEEechh-
Confidence 111111111111 1111111122111 111111111122222222222 333333333456788899999999984
Q ss_pred ccCCCChhHHHHHHhhhCCCCcCc-cccEEEeecCccceeEeec
Q 011149 298 SRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 298 ~~~~~~~~~i~~~i~~~~~~~~~~-ig~i~~~~~~~~~gs~fdv 340 (492)
++|+|+..+..+||++.|...+. |=||.....|+..|+.++.
T Consensus 327 -aRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainF 369 (400)
T KOG0328|consen 327 -ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 369 (400)
T ss_pred -hccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEE
Confidence 88999999999999999987765 5555555555555555554
No 192
>KOG4284 consensus DEAD box protein [Transcription]
Probab=97.25 E-value=0.0015 Score=68.58 Aligned_cols=248 Identities=12% Similarity=0.108 Sum_probs=140.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~ 155 (492)
..+.+|.+||++.+.+|.+.+.. ++.+.++-|+.+-..-..-+ .+.+|+|.|+ +--+-+|+..
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-----k~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-----KQTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-----hhceEEecCchHHHHHHHhcCCCccc
Confidence 45789999999999999888763 36788888887655433223 3577999998 3334478888
Q ss_pred cCEEEe--cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee--------------------c
Q 011149 156 VDLIIH--YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF--------------------V 213 (492)
Q Consensus 156 v~~VI~--~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~--------------------~ 213 (492)
|++.|. .|--.+..+|.|.+.-.=-+-..-..++.++.+-.+.+..+...+..++.. .
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC 247 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeecc
Confidence 888774 333345566766665543333344555556555444444444433222211 1
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEE
Q 011149 214 SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 290 (492)
Q Consensus 214 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~ 290 (492)
..+..-+..+.+++.+...+..++-.+...|... |+.+...+....|-+.+.... ++|..+.-.....+.=.++++
T Consensus 248 s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISga-M~Q~~Rl~a~~~lr~f~~rIL 326 (980)
T KOG4284|consen 248 SPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGA-MSQKDRLLAVDQLRAFRVRIL 326 (980)
T ss_pred CCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccc-cchhHHHHHHHHhhhceEEEE
Confidence 2222334445555555555665555554444332 222222221111111111110 122211111112233357899
Q ss_pred EeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 291 LTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
+++|. .++|+|...+.-+||-+.|...+. |||-..+...+.+.+|..-.++
T Consensus 327 VsTDL--taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 327 VSTDL--TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred Eecch--hhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99997 589999999988898888876654 8888887776655566655444
No 193
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.23 E-value=0.0009 Score=74.45 Aligned_cols=236 Identities=11% Similarity=0.088 Sum_probs=123.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-cccccC---------C
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGL---------D 152 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~~Gi---------d 152 (492)
+..++||.+||++.+.++...|+. .+.+..++|+.+.++|..+.+ ..+|||+|+ .+..++ .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 346899999999999999998875 356788999999887754432 358999996 222121 2
Q ss_pred CCCcCEEEecCC-------CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC----------
Q 011149 153 IPNVDLIIHYEL-------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP---------- 215 (492)
Q Consensus 153 i~~v~~VI~~~~-------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~---------- 215 (492)
+.++++||.=.. -.....++.|+-|..+.-.....+++++.+-....+..+...+..+..+..
T Consensus 155 l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~ 234 (742)
T TIGR03817 155 LRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTV 234 (742)
T ss_pred HhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEE
Confidence 567888873111 123445566665544321122455555543222222233333332221110
Q ss_pred ----CCH------------HHHHHHHHHHHHHHhccCCccchhhhH---HHHHHHHhhhCHH--------HHHHHHHHHc
Q 011149 216 ----PVV------------EDVLESSAEQVVATLNGVHPESVEFFT---PTAQRLIEEKGTD--------ALAAALAQLS 268 (492)
Q Consensus 216 ----p~~------------~~~~~~~~~~~~~~l~~~~~~~~~~f~---~~a~~l~~~~~~~--------~l~~al~~~~ 268 (492)
|.. ..........+...+.. .. ....|. +.++.+...+... .......| .
T Consensus 235 ~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~-~~-~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h-g 311 (742)
T TIGR03817 235 ALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE-GA-RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR-A 311 (742)
T ss_pred EEecCCccccccccccccccchHHHHHHHHHHHHHC-CC-CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee-c
Confidence 110 00001111122222221 11 122222 1132222221100 00000001 1
Q ss_pred CCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCc
Q 011149 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDR 332 (492)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~ 332 (492)
++.+..+.+.+..++.|.+.++++++. ...|+|+.+|..+|+...|..... +||..+....+
T Consensus 312 g~~~~eR~~ie~~f~~G~i~vLVaTd~--lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g 377 (742)
T TIGR03817 312 GYLPEDRRELERALRDGELLGVATTNA--LELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA 377 (742)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEECch--HhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc
Confidence 122222222334567899999999997 688999999999999998876554 78887765544
No 194
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.0014 Score=71.74 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
..++.++...+..+.|+||-+.+.+..+.+...|.+ +++..+|...-...+-+.+.+.=+ .--|-|||+.|.||-||
T Consensus 416 ~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDI 493 (822)
T COG0653 416 KAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDI 493 (822)
T ss_pred HHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCC--CCccccccccccCCccc
Confidence 345566666777889999999999999999999985 788877777644333333333323 33478999999999998
Q ss_pred CCcC-----------EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 154 PNVD-----------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 154 ~~v~-----------~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
.--. +||-..--.+..-=-|--||+||.|-+|.+..+++-.+
T Consensus 494 kLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 494 KLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 5222 34443333333333488999999999998877776544
No 195
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=97.13 E-value=0.00018 Score=48.17 Aligned_cols=17 Identities=53% Similarity=1.273 Sum_probs=15.7
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.|.+|++.|||+.+||+
T Consensus 6 ~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 6 RCQKCGQKGHWTYECPN 22 (42)
T ss_pred cCcccCCCCcchhhCCC
Confidence 49999999999999993
No 196
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.08 E-value=0.015 Score=65.58 Aligned_cols=184 Identities=15% Similarity=0.250 Sum_probs=114.4
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-cccH-H----HHHHHHHH
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSK-R----TILSDLIT 83 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k-~----~~l~~ll~ 83 (492)
+..|.+++-++.+++.+|..+.+ +++++ ++...-.+.+... ....+..++...+... .... + ..+..+..
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lan-a~d~i--g~s~~~v~Nf~p~-~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLAN-ARDLI--GASSSGVFNFSPS-VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhcc-chhhc--cccccceeecCcc-cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 56677777778888888877743 33332 3332233333211 1111222222222111 1111 1 12233333
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHcc-----------------------cceeeecCCCCHHHHHHHHhhhcCCCeEE
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTSI-----------------------IASEALHGDISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----------------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (492)
.....+++|||+++++.|..++..|-.. ++..+=|-+|+..+...+-.-|..|.++|
T Consensus 1355 ~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1355 HAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred HhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 3345679999999999999887655321 22333388999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEE-----ecC------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 141 LVATDVAARGLDIPNVDLII-----HYE------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI-----~~~------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
+|...- -.|+-.. .++|| -|| .+.+.....|+.|++.|+ +.|+++.....+.+++++
T Consensus 1435 ~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 988765 6676554 33444 133 456788999999999884 589999998887777654
No 197
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=97.01 E-value=0.0012 Score=67.20 Aligned_cols=235 Identities=14% Similarity=0.142 Sum_probs=126.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCC----------
Q 011149 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD---------- 152 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid---------- 152 (492)
-.+||.|||++.|.+++..++. .+.+..+-|+... ..-.++... .++|||||+ .|-+|
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~---~~e~~kl~k-~~niliATP--GRLlDHlqNt~~f~~ 228 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNF---SVEADKLVK-GCNILIATP--GRLLDHLQNTSGFLF 228 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccc---hHHHHHhhc-cccEEEeCC--chHHhHhhcCCcchh
Confidence 4689999999999998877663 2445556566332 222334444 789999998 12222
Q ss_pred -------CCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC-ceecCCCCH-----H
Q 011149 153 -------IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK-FEFVSPPVV-----E 219 (492)
Q Consensus 153 -------i~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~-~~~~~~p~~-----~ 219 (492)
+...+++...+++.+.+..+--.. +-...++++.+....++.+.+-.... +..+..-.. .
T Consensus 229 r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp-------k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~Th 301 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIGFEEDVEQIIKILP-------KQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETH 301 (543)
T ss_pred hccceeEeecchhhhhcccHHHHHHHHHhcc-------ccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchh
Confidence 122333334556666655555554 33567788888888888887765443 433322211 1
Q ss_pred HHH---------HHHHHHHHHHhccCCc-cchhhhHHHH------HHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCC
Q 011149 220 DVL---------ESSAEQVVATLNGVHP-ESVEFFTPTA------QRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHE 283 (492)
Q Consensus 220 ~~~---------~~~~~~~~~~l~~~~~-~~~~~f~~~a------~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~ 283 (492)
+-+ ......+...|+.... ..+..|..++ .+|+...+ |...-.|. +.+|..+.+....+.
T Consensus 302 e~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d---lpv~eiHg-k~~Q~kRT~~~~~F~ 377 (543)
T KOG0342|consen 302 ERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID---LPVLEIHG-KQKQNKRTSTFFEFC 377 (543)
T ss_pred hcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC---Cchhhhhc-CCcccccchHHHHHh
Confidence 100 0111222222222111 2233333322 12222111 01111111 122333333333445
Q ss_pred CCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
....-+++.+|. +++|+|..+|..++-...|...++ |||+.+....+ .+.+|=.|.+
T Consensus 378 kaesgIL~cTDV--aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G-~alL~l~p~E 438 (543)
T KOG0342|consen 378 KAESGILVCTDV--AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG-KALLLLAPWE 438 (543)
T ss_pred hcccceEEecch--hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc-eEEEEeChhH
Confidence 555668999998 799999999999999988887776 78888854443 3455555554
No 198
>COG4889 Predicted helicase [General function prediction only]
Probab=96.97 E-value=0.00059 Score=73.64 Aligned_cols=93 Identities=17% Similarity=0.415 Sum_probs=75.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc--------------c--ceeeecCCCCHHHHHHHHh---hhcCCCeEEEEecccccc
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI--------------I--ASEALHGDISQHQRERTLN---GFRQGKFTVLVATDVAAR 149 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~--------------~--~~~~lhg~~~~~~r~~~~~---~F~~g~~~iLVaT~~~~~ 149 (492)
.++|-||.+.++..++++.+..- + .+..+.|.|.-.+|...+. .|...+++||--.-.+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 36899999998888887766421 2 3444557788888855543 445678899988889999
Q ss_pred cCCCCCcCEEEecCCCCChhHHHHHhhhcccC
Q 011149 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (492)
Q Consensus 150 Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (492)
|+|+|.++.||.+++-.+..+.+|-+||+.|-
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999994
No 199
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.96 E-value=0.011 Score=64.77 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=47.3
Q ss_pred HHHHhhhcCCCeEEEEecc----cccccCCCCCcCEEEecCC------CC------ChhHHHHHhhhcccCCCCCeEEEe
Q 011149 127 ERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHYEL------PN------DPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~----~~~~Gidi~~v~~VI~~~~------P~------~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
+.+++.|.. +.+|||+|. +++ +++++|+..|. |. ....+.|-+||+||..+.|.+++.
T Consensus 462 d~~l~~~~~-~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 462 DQVVDTVDA-GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHHhhcc-CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 457888874 899999999 555 36677765442 31 234457889999999899999988
Q ss_pred cChhhHHHHHHH
Q 011149 191 FTSSQRRTVRSL 202 (492)
Q Consensus 191 ~~~~e~~~~~~l 202 (492)
..+ +...++.+
T Consensus 536 ~~p-~~~~~~~l 546 (665)
T PRK14873 536 AES-SLPTVQAL 546 (665)
T ss_pred eCC-CCHHHHHH
Confidence 644 33344443
No 200
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=96.92 E-value=0.00041 Score=44.00 Aligned_cols=17 Identities=59% Similarity=1.040 Sum_probs=11.5
Q ss_pred CCcccCCCCCcccCCCC
Q 011149 475 GACFNCGKSGHRASECP 491 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp 491 (492)
+.|++|++.-|||+||-
T Consensus 3 ~~CprC~kg~Hwa~~C~ 19 (36)
T PF14787_consen 3 GLCPRCGKGFHWASECR 19 (36)
T ss_dssp -C-TTTSSSCS-TTT--
T ss_pred ccCcccCCCcchhhhhh
Confidence 34999999999999994
No 201
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.92 E-value=0.0025 Score=72.21 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=50.4
Q ss_pred cCCeEEEEeCChHHHH-HHHHHHHcccceeeecCCCCHHHHHHHHhhhcC--CCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~-~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~ 145 (492)
....+||.+|+++.+. ++...+...+.+..+.++++..++.++++.+.. +.++||++|+
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 3568999999999997 555555568899999999999999999999877 8899999998
No 202
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.85 E-value=0.015 Score=58.43 Aligned_cols=232 Identities=13% Similarity=0.140 Sum_probs=123.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
-+++|..+|++.+.+....+++ .+.+..+.|+-+.+++-..+. .+-+|++||+ .++.-+++..|.
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~----~npDii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN----ENPDIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc----cCCCEEEecCceeeeeehheecccccee
Confidence 4899999999999988777764 244555555534444443333 2567999998 456668888999
Q ss_pred EEEe------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHH-------
Q 011149 158 LIIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES------- 224 (492)
Q Consensus 158 ~VI~------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~------- 224 (492)
+||. |.+-+ .++..+-+-|. ......++++.+-.+.+-...+.-..++..+.+....++-+.
T Consensus 167 yVVfdEadrlfemgf-qeql~e~l~rl----~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~ 241 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGF-QEQLHEILSRL----PESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFR 241 (529)
T ss_pred eeeehhhhHHHhhhh-HHHHHHHHHhC----CCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheee
Confidence 9984 22211 12222333332 233467777766655555544443333333332222221111
Q ss_pred -----HHHHHHHHhccCC-ccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC---------CCCCCcccccCCCCeEEE
Q 011149 225 -----SAEQVVATLNGVH-PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS---------RPPSSRSLINHEQGWVTL 289 (492)
Q Consensus 225 -----~~~~~~~~l~~~~-~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~---------~~~~~~~l~~~~~~~~~~ 289 (492)
....++..+...- +.....|..+ ..-..+...+++..++. +..+...+..+..+...+
T Consensus 242 ~~~a~K~aaLl~il~~~~~~~~t~vf~~t-------k~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~ 314 (529)
T KOG0337|consen 242 VRKAEKEAALLSILGGRIKDKQTIVFVAT-------KHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSI 314 (529)
T ss_pred eccHHHHHHHHHHHhccccccceeEEecc-------cchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccce
Confidence 1111111111111 1111111111 00112223333333321 112222345567777888
Q ss_pred EEeecCccccCCCChhHHHHHHhhhCCCCcC----ccccEEEeecCccceeEe
Q 011149 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAAD----EIGKIHIIADDRVQGAVF 338 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~----~ig~i~~~~~~~~~gs~f 338 (492)
++.++. +++|+++..+..+||++.|-..+ .+|+..+....+.+.++|
T Consensus 315 lvvTdv--aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V 365 (529)
T KOG0337|consen 315 LVVTDV--AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLV 365 (529)
T ss_pred EEEehh--hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEE
Confidence 888988 89999999999999999875544 378877766555444554
No 203
>smart00343 ZnF_C2HC zinc finger.
Probab=96.80 E-value=0.00051 Score=41.26 Aligned_cols=15 Identities=67% Similarity=1.688 Sum_probs=14.7
Q ss_pred cccCCCCCcccCCCC
Q 011149 477 CFNCGKSGHRASECP 491 (492)
Q Consensus 477 c~~cg~~gh~a~~cp 491 (492)
||+|++.||++++||
T Consensus 2 C~~CG~~GH~~~~C~ 16 (26)
T smart00343 2 CYNCGKEGHIARDCP 16 (26)
T ss_pred CccCCCCCcchhhCC
Confidence 999999999999998
No 204
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.77 E-value=0.0058 Score=59.16 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=59.8
Q ss_pred HHHhhhcCCCeEEEEecccccccCCCCC--------cCEEEecCCCCChhHHHHHhhhcccCCCC-CeEEEe-cC--hhh
Q 011149 128 RTLNGFRQGKFTVLVATDVAARGLDIPN--------VDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILM-FT--SSQ 195 (492)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidi~~--------v~~VI~~~~P~~~~~y~qr~GR~gR~g~~-g~~i~l-~~--~~e 195 (492)
...++|.+|+..|+|.|++++.||.+.. -.+-|.+.+||+.+..+|..||+.|.+.. .-.|.+ ++ +-|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567999999999999999999998853 23567889999999999999999998843 333443 33 236
Q ss_pred HHHHHHHHHHh
Q 011149 196 RRTVRSLERDV 206 (492)
Q Consensus 196 ~~~~~~l~~~~ 206 (492)
.++...+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 205
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=96.73 E-value=0.0014 Score=71.46 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=52.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
....+||.+|+++.+.+....|.. ++.+..+++.++..++..+++..+.+.+++|++|+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 457899999999999988888875 68888999999999999999999999999999986
No 206
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.72 E-value=0.0022 Score=57.58 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC-CCCCCcccCCCCCcccCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDR-SFGGACFNCGKSGHRASECP 491 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~c~~cg~~gh~a~~cp 491 (492)
--|+.||+.||.+++|. +.......|+.|+...+..+..-..+...... .+.+ .--..||+|+-.+|++.||+
T Consensus 98 ~~C~~Cg~~GH~~~dC~-P~~~~~~~C~~C~s~~H~s~~Cp~~~k~y~~~--~~~~~~~~~~cy~c~~~~H~~~dc~ 171 (190)
T COG5082 98 KKCYNCGETGHLSRDCN-PSKDQQKSCFDCNSTRHSSEDCPSIWKHYVLN--NGDGHPIKKFCYSCGSAGHFGDDCK 171 (190)
T ss_pred cccccccccCccccccC-cccccCcceeccCCCccccccCcccccccccc--cCCCcceeeeccccCCccccCCCCC
Confidence 35899999999999995 32233346777775433322111000111111 0001 11245999999999999997
No 207
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=96.67 E-value=0.0015 Score=71.12 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc------ccCCCCCcCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~------~Gidi~~v~~V 159 (492)
..+.+||.+|++..+++....|.. ++.+..+|+.++..++..+++.+..+.++||+.|+--- .-+...++.+|
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 457899999999999888888875 78899999999999999999999999999999986321 12333456666
Q ss_pred E
Q 011149 160 I 160 (492)
Q Consensus 160 I 160 (492)
|
T Consensus 132 V 132 (591)
T TIGR01389 132 A 132 (591)
T ss_pred E
Confidence 6
No 208
>PTZ00424 helicase 45; Provisional
Probab=96.67 E-value=0.0015 Score=67.59 Aligned_cols=240 Identities=12% Similarity=0.127 Sum_probs=113.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~v 156 (492)
..++||++||++.+.++.+.+... ..+..+.|+....+.. +.+.+ ..+|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDI---NKLKA-GVHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHH---HHHcC-CCCEEEECcHHHHHHHHhCCcccccc
Confidence 457999999999999998877642 3455667776654433 33333 35799999722 234567788
Q ss_pred CEEEecCCCCC-hhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC----HHH---------HH
Q 011149 157 DLIIHYELPND-PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV----VED---------VL 222 (492)
Q Consensus 157 ~~VI~~~~P~~-~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~----~~~---------~~ 222 (492)
++||.=+.-.- ...|...+-..-+.-.....+++++.+-...+..+..........+..+. .+. ..
T Consensus 172 ~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 172 KLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE 251 (401)
T ss_pred cEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH
Confidence 88874221100 00111111111111123345555555433333333333322221111100 000 00
Q ss_pred HHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc--------CCCCCCCCcccccCCCCeEEEEEeec
Q 011149 223 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS--------GFSRPPSSRSLINHEQGWVTLQLTRD 294 (492)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (492)
+.....+...+..........|..+.+. .+.++..|.... ++++..+..-+..++.|.+.++++++
T Consensus 252 ~~~~~~l~~~~~~~~~~~~ivF~~t~~~------~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 252 EWKFDTLCDLYETLTITQAIIYCNTRRK------VDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCcHH------HHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 1111122222222221112222221110 111222221110 01111111223345678889999998
Q ss_pred CccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee
Q 011149 295 SAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD 339 (492)
Q Consensus 295 ~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd 339 (492)
. ...|+|..++..+|+...|....+ +||..+....+...++++
T Consensus 326 ~--l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~ 372 (401)
T PTZ00424 326 L--LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVT 372 (401)
T ss_pred c--ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEc
Confidence 7 688999999998888887765433 777777655443334443
No 209
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.64 E-value=0.0036 Score=60.44 Aligned_cols=249 Identities=14% Similarity=0.126 Sum_probs=137.6
Q ss_pred CeEEEEeCChHHHHHHHHHH---Hc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccC-CCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLAL---TS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l---~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gi-di~~v~ 157 (492)
-++||.++|++.|-+..+.. .+ .+.+.+..|+.+-. +.+++- +..+.++|+|+ .+..|+ |+.++.
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl--~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRL--NQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeee--cCceEEEEcCChhHHHHHhcccccchhce
Confidence 47899999999888766554 44 36778888986543 334332 34789999997 556664 455555
Q ss_pred EEEe--------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC------CHHH---
Q 011149 158 LIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP------VVED--- 220 (492)
Q Consensus 158 ~VI~--------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p------~~~~--- 220 (492)
.+|. .++-..++..+.-. .+...+++|+.+-.-.++.+.+....++-.+.+- -...
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~l-------P~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYa 302 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFL-------PKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYA 302 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhC-------CccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhhee
Confidence 5443 12222334444333 3457788888877777776655544333222111 0000
Q ss_pred -HHHHHHHHHHHHhc-cCCccchh-hhHHH--HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecC
Q 011149 221 -VLESSAEQVVATLN-GVHPESVE-FFTPT--AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295 (492)
Q Consensus 221 -~~~~~~~~~~~~l~-~~~~~~~~-~f~~~--a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (492)
+.+...-..+..|- .+...+.. ++..+ ++-|......-.+.....|.- +.|.-+.|-.-.++.|..+.++.+|.
T Consensus 303 fV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHak-M~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAK-MAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred eechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHH-HHHhhhhhhhhhhhccccceeeehhh
Confidence 00111111111111 11111111 11111 111111111122222233322 23444555666788899999999986
Q ss_pred ccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHHHHHHhh
Q 011149 296 AFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (492)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~ 351 (492)
-.+|+|+.-+.-+||++.|..++. |||-..+...+.+..++.-.+...-.-++.
T Consensus 382 --~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 382 --FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred --hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 588999999999999999987775 888877777766666666655544444443
No 210
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=96.63 E-value=0.00037 Score=71.67 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=123.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc--cccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA--ARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~--~~Gidi~~v 156 (492)
--+||..||++.|.++.+.|.+ .|.+..+-|+..-+. +.-|-..++|||||+ .+ .-.++.+++
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 4699999999999999999985 266777777754332 222334689999998 12 234455666
Q ss_pred CEEEe------cC--CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC------CHHHHH
Q 011149 157 DLIIH------YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP------VVEDVL 222 (492)
Q Consensus 157 ~~VI~------~~--~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p------~~~~~~ 222 (492)
.++|. +| +-...+..+--+ .+-...+|++.+....++.|.+....++..+.+- .++...
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~l-------P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~ 289 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENL-------PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQ 289 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhC-------ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhh
Confidence 66552 11 222222222221 2446788899988888888888765555443222 111111
Q ss_pred --------HHHHHHHHHHhccCCccchhhhHHHHHH------HHhhhCHHHHHHHHHHHcC-CCCCCCCcccccCCCCeE
Q 011149 223 --------ESSAEQVVATLNGVHPESVEFFTPTAQR------LIEEKGTDALAAALAQLSG-FSRPPSSRSLINHEQGWV 287 (492)
Q Consensus 223 --------~~~~~~~~~~l~~~~~~~~~~f~~~a~~------l~~~~~~~~l~~al~~~~~-~~~~~~~~~l~~~~~~~~ 287 (492)
+..+..+..-+..........|..+.++ ++.++.+ -..|++|.| ++|..+...+..+-+...
T Consensus 290 Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrp---g~~l~~L~G~~~Q~~R~ev~~~F~~~~~ 366 (758)
T KOG0343|consen 290 QSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRP---GIPLLALHGTMSQKKRIEVYKKFVRKRA 366 (758)
T ss_pred heEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCC---CCceeeeccchhHHHHHHHHHHHHHhcc
Confidence 2233333333333222222223222111 1111100 001122222 112111111222333345
Q ss_pred EEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
.+++.++. +++|+|-..|..+|-.+.|...+. +||...+...+. ..++=+|.+
T Consensus 367 ~vLF~TDv--~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~-sll~L~psE 423 (758)
T KOG0343|consen 367 VVLFCTDV--AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGE-SLLMLTPSE 423 (758)
T ss_pred eEEEeehh--hhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCc-eEEEEcchh
Confidence 67888887 788888777776777777655443 788877765442 234444443
No 211
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=96.50 E-value=0.00093 Score=63.21 Aligned_cols=17 Identities=53% Similarity=1.402 Sum_probs=15.7
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
+||+||++|||+.|||.
T Consensus 162 ~cyrcGkeghwskEcP~ 178 (346)
T KOG0109|consen 162 GCYRCGKEGHWSKECPV 178 (346)
T ss_pred HheeccccccccccCCc
Confidence 39999999999999994
No 212
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.50 E-value=0.013 Score=64.84 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=71.7
Q ss_pred ccHHHHHHHHH-HHHccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc
Q 011149 72 TSKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (492)
Q Consensus 72 ~~k~~~l~~ll-~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (492)
..|..+...++ ..+..+.++||.+||++.+.++++.|++ ...+..+||+++..+|.+...++.+++.+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 34655554433 3344567899999999999999999986 35688999999999999999999999999999998543
Q ss_pred ccCCCCCcCEEEecC
Q 011149 149 RGLDIPNVDLIIHYE 163 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~ 163 (492)
. +.+.++.+||.-+
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5677888888433
No 213
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.46 E-value=0.014 Score=62.24 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=70.3
Q ss_pred cHHHHHHHHHH-HHccCCeEEEEeCChHHHHHHHHHHHcc--cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccc
Q 011149 73 SKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 149 (492)
Q Consensus 73 ~k~~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~~--~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~ 149 (492)
-|.++...++. .+..+.++||.+|++..+.++++.|++. ..+..+|++++..+|.++..+..+|+.+|+|+|..+..
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 45555444443 3345678999999999999999999863 56889999999999999999999999999999986443
Q ss_pred cCCCCCcCEEEe
Q 011149 150 GLDIPNVDLIIH 161 (492)
Q Consensus 150 Gidi~~v~~VI~ 161 (492)
+.++++.+||.
T Consensus 89 -~p~~~l~lIIV 99 (505)
T TIGR00595 89 -LPFKNLGLIIV 99 (505)
T ss_pred -CcccCCCEEEE
Confidence 56778888884
No 214
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.40 E-value=0.042 Score=58.57 Aligned_cols=118 Identities=16% Similarity=0.258 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC--CCeEE-EEeccc
Q 011149 73 SKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTV-LVATDV 146 (492)
Q Consensus 73 ~k~~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~i-LVaT~~ 146 (492)
-|...+..++..+ ....+++|...-.....-+...|.+ ++....+||.+..++|+.+++.|.. +..+| |++=.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3444444444333 3446777766655555666667775 5777889999999999999999964 44555 456677
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
-+.|||+-..+|+|..|+-|++.-=.|.+-|.-|.|.+..+++.
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 88899999999999999999999999999999999977666553
No 215
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.35 E-value=0.014 Score=54.79 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=82.9
Q ss_pred eEEEEeCChHHHHHHHHHHHc---c---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 90 KTIVFTQTKRDADEVSLALTS---I---IASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~---~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
.++|.|.|++.|-++.....+ . .++.++.|+++.+.-+++++. --.|+|+|+ +-.+-+++.+|.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 689999999999999876653 2 568899999998888887776 567999998 445678888888
Q ss_pred EEEecCCCC-----ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC
Q 011149 158 LIIHYELPN-----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (492)
Q Consensus 158 ~VI~~~~P~-----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (492)
+.|.-..-. +...-+|-+=| +......+.+++.+-...++-+.+....++.++.+..
T Consensus 188 hFvlDEcdkmle~lDMrRDvQEifr---~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDd 249 (387)
T KOG0329|consen 188 HFVLDECDKMLEQLDMRRDVQEIFR---MTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDD 249 (387)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhh---cCcccceeeeeeeecchhhHHHHHhhhcCchhhhccc
Confidence 877422211 11222454444 3345566777777666667777776666655444443
No 216
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.33 E-value=0.13 Score=56.48 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
......|+..+..++++-||+.|...++.+++.... ..++..+++.-+..+ + +. -++++|+|=|+++..|+++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSF 342 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEecc
Confidence 344555666666778888999999999999988876 456777777654442 2 22 3478999999999999999
Q ss_pred CCcC--EEEecCCC----CChhHHHHHhhhcccCCCCCeEEEec
Q 011149 154 PNVD--LIIHYELP----NDPETFVHRSGRTGRAGKEGTAILMF 191 (492)
Q Consensus 154 ~~v~--~VI~~~~P----~~~~~y~qr~GR~gR~g~~g~~i~l~ 191 (492)
.... -|.-|=-| .+..+..|++||+-... ....++.+
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~ 385 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYI 385 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEE
Confidence 7553 23333212 35667899999975543 33444433
No 217
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.29 E-value=0.0087 Score=61.72 Aligned_cols=121 Identities=10% Similarity=0.171 Sum_probs=70.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHccc-------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-------cccccCCCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSII-------ASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDIP 154 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~~-------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------~~~~Gidi~ 154 (492)
.-+||.+||++.|.++++.+++.+ +...+-|.-...++ .++|. .++|||+|+ .--..|++.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK----ARLRK-GiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK----ARLRK-GINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH----HHHhc-CceEEEcCchHHHHHHhccchheee
Confidence 368999999999999999887521 22333333222222 23344 579999998 123356677
Q ss_pred CcCEEEe--------cCCCCChhHHHHHhhhcccCCCC------CeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 155 NVDLIIH--------YELPNDPETFVHRSGRTGRAGKE------GTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 155 ~v~~VI~--------~~~P~~~~~y~qr~GR~gR~g~~------g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
.+.+||. +++-.++...+--++-.-++-.+ -.+-+|++.+-...+.+|......++..+.
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ 360 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS 360 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee
Confidence 7788772 34455666666555443332222 134456666666666666555444444333
No 218
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.25 E-value=0.026 Score=61.86 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHccc---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
+.|.+++..++... ..++++||.+|....+.++...|+..+ .+..+|+++++.+|.+...+.++|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46767666666543 457799999999999999999999754 48899999999999999999999999999999865
Q ss_pred cccCCCCCcCEEEecC
Q 011149 148 ARGLDIPNVDLIIHYE 163 (492)
Q Consensus 148 ~~Gidi~~v~~VI~~~ 163 (492)
. =.-+++..+||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 4 35677888888544
No 219
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.23 E-value=0.015 Score=63.71 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=71.1
Q ss_pred cHHHH-HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 73 SKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 73 ~k~~~-l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
-|..+ +..++..+..+.+++|.+||+..|+++++.+.+ .+.+..+||+++..+|..+++.+.+|+.+|+|+|..
T Consensus 268 GKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ 347 (630)
T TIGR00643 268 GKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHA 347 (630)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHH
Confidence 45433 334455555667999999999999999988874 367899999999999999999999999999999974
Q ss_pred c-cccCCCCCcCEEEe
Q 011149 147 A-ARGLDIPNVDLIIH 161 (492)
Q Consensus 147 ~-~~Gidi~~v~~VI~ 161 (492)
+ ...+.+.++.+||.
T Consensus 348 ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 348 LIQEKVEFKRLALVII 363 (630)
T ss_pred HHhccccccccceEEE
Confidence 4 34567788888874
No 220
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=96.14 E-value=0.033 Score=56.29 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=65.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccC--CCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL--DIP 154 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gi--di~ 154 (492)
..++|.+||++.|++++..+.+ .+.+.-+.++|+......++.. .-.|+|+|+ .++.|+ +..
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d----~pdIvV~TP~~ll~~~~~~~~~~~~ 169 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD----LPDIVVATPAKLLRHLAAGVLEYLD 169 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc----CCCeEEeChHHHHHHHhhccchhhh
Confidence 4689999999999999888764 2456677778887776655554 778999998 345555 333
Q ss_pred CcCEEE--------ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 155 NVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 155 ~v~~VI--------~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
.+.+.| -|+.-.+.....--+ .....-++.+.+-...+..+.+.+-
T Consensus 170 ~l~~LVvDEADLllsfGYeedlk~l~~~L-------Pr~~Q~~LmSATl~dDv~~LKkL~l 223 (569)
T KOG0346|consen 170 SLSFLVVDEADLLLSFGYEEDLKKLRSHL-------PRIYQCFLMSATLSDDVQALKKLFL 223 (569)
T ss_pred heeeEEechhhhhhhcccHHHHHHHHHhC-------CchhhheeehhhhhhHHHHHHHHhc
Confidence 444333 333322222222111 2234455666665566666666543
No 221
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.11 E-value=0.0097 Score=66.06 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=38.9
Q ss_pred CeEEEEe-CChHHHHHHHHHHHc---c-------------------------cceeeecCCCCHHHHHHHHhhhcCCCeE
Q 011149 89 GKTIVFT-QTKRDADEVSLALTS---I-------------------------IASEALHGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 89 ~~~iVF~-~t~~~~~~l~~~l~~---~-------------------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (492)
.+.|||+ +|++.++++++.+.+ . +.+..++|+.+...+...+.. ...
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CCc
Confidence 4677776 999999998887753 1 457788999887665544433 568
Q ss_pred EEEecc
Q 011149 140 VLVATD 145 (492)
Q Consensus 140 iLVaT~ 145 (492)
|||+|.
T Consensus 138 IIVgT~ 143 (844)
T TIGR02621 138 VIVGTV 143 (844)
T ss_pred EEEECH
Confidence 999994
No 222
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.007 Score=58.75 Aligned_cols=16 Identities=56% Similarity=1.545 Sum_probs=13.3
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
||+|++.+|+++|||+
T Consensus 167 c~~c~~~~h~~~~C~~ 182 (261)
T KOG4400|consen 167 CFRCGKVGHGSRDCPS 182 (261)
T ss_pred cccCCCcceecccCCc
Confidence 8888888888888884
No 223
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.03 E-value=0.0016 Score=67.71 Aligned_cols=246 Identities=14% Similarity=0.197 Sum_probs=141.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc---CC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG---LD 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G---id 152 (492)
.-+++|..+|++.+.+++..+.+. +.+..++....+.++...+ ..-..+|||.|+ ++..+ ||
T Consensus 209 gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~---~~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 209 GLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFL---SDEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred ceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchh---HHHHHHHHhcCHHHHHHHhcCCCccch
Confidence 358999999999999999888753 2233344333333322211 223567999998 34443 68
Q ss_pred CCCcCEEEe--cCCCCChhHHHHHhhhcccC-CCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH---HHHH---
Q 011149 153 IPNVDLIIH--YELPNDPETFVHRSGRTGRA-GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE---DVLE--- 223 (492)
Q Consensus 153 i~~v~~VI~--~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~---~~~~--- 223 (492)
+..|.++|. .|.-..++.|+-..-+.--+ -.+-.++-+++.+-...++++.+........+.+...+ +.++
T Consensus 286 l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 286 LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQEL 365 (593)
T ss_pred hheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhh
Confidence 888888774 22222333332222221110 12445556666665566666666655555444333221 1111
Q ss_pred -------HHHHHHHHHhcc-CCccchhh--hHHHHHHHHhhh-CHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEe
Q 011149 224 -------SSAEQVVATLNG-VHPESVEF--FTPTAQRLIEEK-GTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (492)
Q Consensus 224 -------~~~~~~~~~l~~-~~~~~~~~--f~~~a~~l~~~~-~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (492)
..+..+.+.+.. ..+..+.+ -.+.|++|++++ .-+.+....+|.. .++..+...+..++.|-+-+++.
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e-~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGE-RSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecc-cchhHHHHHHHHHhccCeeEEEe
Confidence 111222222222 22222222 234467777766 3344444444443 33444455667788999999999
Q ss_pred ecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee
Q 011149 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD 339 (492)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd 339 (492)
++. -.+|+|-..+.-+|+++.|...-. |||+......+.+.+||.
T Consensus 445 Tdl--l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 445 TDL--LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred hhh--hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 997 578999999999999998865543 899888888777778873
No 224
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.05 Score=56.27 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=116.9
Q ss_pred CcEEEEeeeCChHHHHHHHHHcCCCc-eEEeeccccc----ccccceEEEE--EEcC-----cccHHHHH-HHHHHHHcc
Q 011149 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDE----KLAEGIKLYA--ISTT-----ATSKRTIL-SDLITVYAK 87 (492)
Q Consensus 21 ~q~ll~SAT~p~~i~~~~~~~~~~~~-~i~~~~~~~~----~~~~~i~~~~--~~~~-----~~~k~~~l-~~ll~~~~~ 87 (492)
+|+|+||+-..+.+..+...++.+-. .|........ .+...+.|.+ +.+. ...+.... ..|+-.+.+
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 59999999998888888888877532 2221111111 0011111111 1111 11222211 222222211
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--cccccCCCCCcCEEEec
Q 011149 88 --GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLIIHY 162 (492)
Q Consensus 88 --~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidi~~v~~VI~~ 162 (492)
..-+|||.|+--+-..|-.++++ .+....+|--.++..-.++-+-|-.|...||+-|. ..-+-.+|..|.-||.|
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 23579999999998899888885 55566666666667777778889999999999997 34566789999999999
Q ss_pred CCCCChhHH---HHHhhhcccCC----CCCeEEEecChhhHHHHHHH
Q 011149 163 ELPNDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 163 ~~P~~~~~y---~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l 202 (492)
.+|..|.-| +.+.+|+.-.| ..-.|.++|+..+.-.+..+
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 999998666 66777765443 33578889988776444443
No 225
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.72 E-value=0.0063 Score=62.22 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=51.4
Q ss_pred cccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH-HHHHHHHhhc
Q 011149 279 LINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE-EIAKELLNKQ 352 (492)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~-~~a~~~i~~~ 352 (492)
+..+..|..++++..|. .++|+|+.++..+||++.|..... +||+.++...+.+.++.+--+ ....++++..
T Consensus 476 l~~f~~g~i~vLIcSD~--laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 476 LEKFAKGDINVLICSDA--LARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred HHHHhcCCceEEEehhh--hhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 34577899999999997 689999999999999999976554 899888876654334433322 2334455543
No 226
>PRK09401 reverse gyrase; Reviewed
Probab=95.63 E-value=0.011 Score=68.89 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=54.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cce--eeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IAS--EALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIP 154 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~--~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gidi~ 154 (492)
...++||.+||++.+.++++.++.. +.+ ...|+.++..++.+..+.+.++..+|+|+|+ .+. .+...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hcccc
Confidence 4578999999999999999998752 233 3346667788888888999988899999996 222 34444
Q ss_pred CcCEEE
Q 011149 155 NVDLII 160 (492)
Q Consensus 155 ~v~~VI 160 (492)
.+++||
T Consensus 201 ~~~~lV 206 (1176)
T PRK09401 201 KFDFVF 206 (1176)
T ss_pred ccCEEE
Confidence 467666
No 227
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.45 E-value=0.026 Score=60.35 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=72.0
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-cccc
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG 150 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~G 150 (492)
++..++..+..+.++...+||.-.|++-+..+.+ ++.|..+.|.+...+|.+++++..+|+++|+|.|-+ +...
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 3444555666778999999999999988888775 356899999999999999999999999999999974 5667
Q ss_pred CCCCCcCEEEe
Q 011149 151 LDIPNVDLIIH 161 (492)
Q Consensus 151 idi~~v~~VI~ 161 (492)
+++.++-+||.
T Consensus 380 V~F~~LgLVIi 390 (677)
T COG1200 380 VEFHNLGLVII 390 (677)
T ss_pred eeecceeEEEE
Confidence 88988888885
No 228
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=95.34 E-value=0.013 Score=31.75 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCCC
Q 011149 417 SSRSWGSDDEDGFSSSR 433 (492)
Q Consensus 417 ~~~~~g~~g~~~~~~~~ 433 (492)
.|++||+.||.+++|+.
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 59999999999999973
No 229
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.28 E-value=0.0033 Score=62.03 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=60.9
Q ss_pred HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc-----
Q 011149 247 TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----- 321 (492)
Q Consensus 247 ~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----- 321 (492)
+|..|.+++..+....+++|.. +....+..-+..+++|...+++.+.. -++|+|+..+.-++|++.|.....
T Consensus 342 ta~~l~~~m~~~Gh~V~~l~G~-l~~~~R~~ii~~Fr~g~~kVLitTnV--~ARGiDv~qVs~VvNydlP~~~~~~pD~e 418 (477)
T KOG0332|consen 342 TAMWLYEEMRAEGHQVSLLHGD-LTVEQRAAIIDRFREGKEKVLITTNV--CARGIDVAQVSVVVNYDLPVKYTGEPDYE 418 (477)
T ss_pred hHHHHHHHHHhcCceeEEeecc-chhHHHHHHHHHHhcCcceEEEEech--hhcccccceEEEEEecCCccccCCCCCHH
Confidence 3555555554444444444433 22223333345688999999999998 489999999999999999976543
Q ss_pred -----cccEEEeecCccceeEeecC
Q 011149 322 -----IGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 322 -----ig~i~~~~~~~~~gs~fdv~ 341 (492)
|||+.++..-+.++.++|..
T Consensus 419 tYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 419 TYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred HHHHHhcccccccccceEEEeeccc
Confidence 78877776655555555553
No 230
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.11 E-value=0.13 Score=44.92 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhhhcCCC-eEEEEecccccccCCCCCc--CEEEecCCCC
Q 011149 121 ISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPNV--DLIIHYELPN 166 (492)
Q Consensus 121 ~~~~~r~~~~~~F~~g~-~~iLVaT~~~~~Gidi~~v--~~VI~~~~P~ 166 (492)
....+...+++.|+... ..||++|...++|||+|+- ..||...+|.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44556788888998654 3799999889999999964 5788777764
No 231
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=94.98 E-value=0.089 Score=62.24 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=53.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----------------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV----- 146 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----------------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~----- 146 (492)
.++|+.+|+++.+.++.+.|+. .+.+..+||+.++.+|.+.++. ..+|||+|+-
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~L 113 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYLM 113 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHHH
Confidence 5799999999999998887642 3567889999999999876654 6789999982
Q ss_pred c-ccc-CCCCCcCEEEe
Q 011149 147 A-ARG-LDIPNVDLIIH 161 (492)
Q Consensus 147 ~-~~G-idi~~v~~VI~ 161 (492)
+ .+. ..+.+|++||.
T Consensus 114 Ltsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 114 LTSRARETLRGVETVII 130 (1490)
T ss_pred HhhhhhhhhccCCEEEE
Confidence 2 222 35788998883
No 232
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.11 Score=57.94 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=51.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc------cceee-ecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI------IASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~------~~~~~-lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
+++++++.+||...+.++++.|... +.+.. +|+.|+.+++++++++|.+|+++|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 5689999999999999999988742 33322 999999999999999999999999999973
No 233
>PRK13767 ATP-dependent helicase; Provisional
Probab=94.86 E-value=0.1 Score=59.58 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=49.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----------------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-cc--
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AA-- 148 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----------------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~-- 148 (492)
.++|+.+|+++.+.+++..|.. .+.+...||+.++.++.+.++. ..+|||+|+- +.
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 3699999999999988765431 2457889999999998877664 5689999982 11
Q ss_pred ---cc--CCCCCcCEEEe
Q 011149 149 ---RG--LDIPNVDLIIH 161 (492)
Q Consensus 149 ---~G--idi~~v~~VI~ 161 (492)
.. -.+.++.+||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 11 13567888874
No 234
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.63 E-value=0.13 Score=56.68 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=75.5
Q ss_pred cCcccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 69 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 69 ~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
+.-+.|.++...++.. +..++++||.+|.+....++...++. +.++.++|++|++.+|..+..+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 4445677777776654 45678999999999999999999986 46789999999999999999999999999999997
Q ss_pred cccccCCCCCcCEEEe
Q 011149 146 VAARGLDIPNVDLIIH 161 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~ 161 (492)
.+- =.-++++.+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 543 345678888773
No 235
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.52 E-value=0.15 Score=44.48 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.7
Q ss_pred HHHHHHhhhcCCCe---EEEEeccc--ccccCCCCC--cCEEEecCCCC
Q 011149 125 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPN--VDLIIHYELPN 166 (492)
Q Consensus 125 ~r~~~~~~F~~g~~---~iLVaT~~--~~~Gidi~~--v~~VI~~~~P~ 166 (492)
+..++++.|++..- .||+++.- +++|||+|+ +..||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44677888876433 58888876 999999997 45788877764
No 236
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=94.15 E-value=0.072 Score=53.04 Aligned_cols=245 Identities=13% Similarity=0.140 Sum_probs=121.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccCCCC-Cc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIP-NV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gidi~-~v 156 (492)
..++||+.||++.+.++...... .+.+..+-|+.........++. -...|+|.|+ .+.++-..+ .+
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~---~~~hivvGTpgrV~dml~~~~l~~~~i 170 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLK---DKPHIVVGTPGRVFDMLNRGSLSTDGI 170 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhc---cCceeecCCchhHHHhhccccccccce
Confidence 45789999999999888865553 1344444455443322222222 2456777776 333332222 24
Q ss_pred CEEEecC----CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHH
Q 011149 157 DLIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232 (492)
Q Consensus 157 ~~VI~~~----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 232 (492)
.+.+.-. ++....+.++.+=+- -.+-..+++++.+....+..+.+.....+..+.....+-.++....-.+..
T Consensus 171 KmfvlDEaDEmLs~gfkdqI~~if~~---lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v 247 (397)
T KOG0327|consen 171 KMFVLDEADEMLSRGFKDQIYDIFQE---LPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINV 247 (397)
T ss_pred eEEeecchHhhhccchHHHHHHHHHH---cCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeec
Confidence 4444322 345556666665442 233456677777666666666666655554444333221111000000000
Q ss_pred hccCCccchhhhHHHHHHHHh------hhC-HHHHHHHHHHHcC---------CCCCCCCcccccCCCCeEEEEEeecCc
Q 011149 233 LNGVHPESVEFFTPTAQRLIE------EKG-TDALAAALAQLSG---------FSRPPSSRSLINHEQGWVTLQLTRDSA 296 (492)
Q Consensus 233 l~~~~~~~~~~f~~~a~~l~~------~~~-~~~l~~al~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (492)
+ .++.++......+++-. ... ...+-..| ...+ +.+..+..-+..++.|..++++.++.
T Consensus 248 ~---k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L-~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl- 322 (397)
T KOG0327|consen 248 E---KEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKL-RAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDL- 322 (397)
T ss_pred c---ccccccHHHHHHHhhhcceEEecchhhHHHHHHHH-hhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccc-
Confidence 0 01111111111110000 000 01111111 2221 22333333445678899999999998
Q ss_pred cccCCCChhHHHHHHhhhCCCCcCc-cccEEEeecCccceeEeecCHHH
Q 011149 297 FSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVFDLPEEI 344 (492)
Q Consensus 297 ~~~~~~~~~~i~~~i~~~~~~~~~~-ig~i~~~~~~~~~gs~fdv~~~~ 344 (492)
.++++++..+..++|++.|...+. |=|+.+...++..|..+..-++.
T Consensus 323 -~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~ 370 (397)
T KOG0327|consen 323 -LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEE 370 (397)
T ss_pred -cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHh
Confidence 689999999999999999976654 33444444444445555444443
No 237
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.99 E-value=0.036 Score=65.00 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=77.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCC-----------HHHHHHHHhhhcCCCeEEEEecccccccCCCCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~-----------~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~ 155 (492)
-..|+||+.+..+..+.+.+.+ ...+..+.|.+. +..+.+++..|....+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 4569999999999998888875 233333444322 234788999999999999999999999999999
Q ss_pred cCEEEecCCCCChhHHHHHhhhcccCC
Q 011149 156 VDLIIHYELPNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~g 182 (492)
++.|+.++.|.....|+|..||+-+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999986643
No 238
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=93.93 E-value=0.45 Score=46.54 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=4.3
Q ss_pred CCCCCCcccC
Q 011149 471 RSFGGACFNC 480 (492)
Q Consensus 471 ~~~~~~c~~c 480 (492)
+|++++-|+-
T Consensus 453 ggggrg~y~~ 462 (465)
T KOG3973|consen 453 GGGGRGGYRG 462 (465)
T ss_pred CCCCCcccCC
Confidence 3344444553
No 239
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=93.78 E-value=0.52 Score=48.90 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=57.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--cc---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~--~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
++++|+..||+-.+.+-+..+.+ .+ .+..|.|..++++|...... .+|+|||+ +.+-=||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 34799999999999999998886 33 47799999999999987765 57999997 45555899999
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
.++|.
T Consensus 133 ~~lif 137 (542)
T COG1111 133 SLLIF 137 (542)
T ss_pred eEEEe
Confidence 99884
No 240
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.65 E-value=0.25 Score=53.46 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=85.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-c------------------ceeeecCCCCHHHHHHHHhhhcCC---CeEEEEecc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-I------------------ASEALHGDISQHQRERTLNGFRQG---KFTVLVATD 145 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~------------------~~~~lhg~~~~~~r~~~~~~F~~g---~~~iLVaT~ 145 (492)
+.++|||.......+.|.+.|.+. + ...-+.|-.+..+|++.+++|.+. ..-+|++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 468999999888888888887642 1 223467788889999999999863 245789999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
.-..|||+-..+-+|.+|.-|++.--.|.+-|+-|.|.+..|+++-.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 99999999888899999999999999999999999998877777533
No 241
>PRK14701 reverse gyrase; Provisional
Probab=93.57 E-value=0.2 Score=60.34 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
+..++||.+||++.+.+++..|.. .+.+..+||+++..++.++++.++++..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999998875 245678999999999999999999999999999984
No 242
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=93.41 E-value=0.18 Score=59.00 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=50.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cc---eeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IA---SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~---~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
...++||.+||++.|.++++.+... +. +..+||+++..++...++.+.++..+|||+|+
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4578999999999999999888752 22 23589999999999999999998899999998
No 243
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=93.31 E-value=0.065 Score=54.68 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..|..||..||..++|+..- -+| -..|+.||..||+++||+.
T Consensus 262 ~~c~~cg~~~H~q~~cp~r~------------------~~~-----------------~n~c~~cg~~gH~~~dc~~ 303 (554)
T KOG0119|consen 262 RACRNCGSTGHKQYDCPGRI------------------PNT-----------------TNVCKICGPLGHISIDCKV 303 (554)
T ss_pred ccccccCCCccccccCCccc------------------ccc-----------------cccccccCCcccccccCCC
Confidence 57999999999999998430 011 0139999999999999973
No 244
>PHA02653 RNA helicase NPH-II; Provisional
Probab=93.15 E-value=0.13 Score=56.62 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=45.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
..+++|-+||++.|.+++..+.+ ...+...+|+++..... ...+ ...|||+|.-+. -.++..+++|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~---t~~k--~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELIN---TNPK--PYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhh---cccC--CCCEEEEeCccc-ccccccCCEE
Confidence 35899999999999998888764 13457789998742211 1112 347999995321 1256678888
Q ss_pred Ee
Q 011149 160 IH 161 (492)
Q Consensus 160 I~ 161 (492)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 84
No 245
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=92.86 E-value=0.037 Score=38.75 Aligned_cols=16 Identities=56% Similarity=1.547 Sum_probs=15.3
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
||+||..||.+++||.
T Consensus 34 C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 34 CFHCGRIGHSDKECPK 49 (49)
T ss_pred hcCCCCcCcCHhHcCC
Confidence 9999999999999994
No 246
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=92.46 E-value=0.062 Score=35.42 Aligned_cols=16 Identities=50% Similarity=1.173 Sum_probs=14.3
Q ss_pred CcccCCCCCccc--CCCC
Q 011149 476 ACFNCGKSGHRA--SECP 491 (492)
Q Consensus 476 ~c~~cg~~gh~a--~~cp 491 (492)
.|.+||..||++ +.||
T Consensus 3 kC~~CG~~GH~~t~k~CP 20 (40)
T PF15288_consen 3 KCKNCGAFGHMRTNKRCP 20 (40)
T ss_pred cccccccccccccCccCC
Confidence 499999999998 6788
No 247
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.10 E-value=0.58 Score=53.42 Aligned_cols=88 Identities=17% Similarity=0.288 Sum_probs=71.9
Q ss_pred HHHH-HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEec-cc
Q 011149 74 KRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DV 146 (492)
Q Consensus 74 k~~~-l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT-~~ 146 (492)
|.++ +.........+++|.|.+||.-.|++-++.+++. +.+..|..=.+.+++.++++..++|+++|||.| .+
T Consensus 628 KTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL 707 (1139)
T COG1197 628 KTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL 707 (1139)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh
Confidence 4443 3334444456789999999999999999999863 356778888889999999999999999999999 47
Q ss_pred ccccCCCCCcCEEEe
Q 011149 147 AARGLDIPNVDLIIH 161 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~ 161 (492)
+...|-+.++-+||.
T Consensus 708 L~kdv~FkdLGLlII 722 (1139)
T COG1197 708 LSKDVKFKDLGLLII 722 (1139)
T ss_pred hCCCcEEecCCeEEE
Confidence 888888999998885
No 248
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.71 E-value=0.094 Score=49.98 Aligned_cols=18 Identities=44% Similarity=1.289 Sum_probs=16.1
Q ss_pred CCCcccCCCCCcccCCCC
Q 011149 474 GGACFNCGKSGHRASECP 491 (492)
Q Consensus 474 ~~~c~~cg~~gh~a~~cp 491 (492)
|--||+||+.|||-..||
T Consensus 176 gY~CyRCGqkgHwIqnCp 193 (427)
T COG5222 176 GYVCYRCGQKGHWIQNCP 193 (427)
T ss_pred ceeEEecCCCCchhhcCC
Confidence 345999999999999999
No 249
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.46 E-value=2.1 Score=39.27 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=50.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----c-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidi~~v 156 (492)
..++||.++|++.+.+++..+.. .+.+..+|++.+..+....++ ....|+|+|+. + ..-.+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 35899999999999998877753 356778899988766654444 46789999962 2 222567778
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
+++|.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 87773
No 250
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=89.18 E-value=2.5 Score=37.27 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=50.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHH-HHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQH-QRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~-~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
.++||.+|+++.++++...+... +.+..+|++.+.. +....+ .+..+|+|+|+ +....+++..+
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 120 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISRL 120 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTTE
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccccc
Confidence 49999999999999999888752 4678889998755 334444 44678999997 22223466777
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 121 ~~iVi 125 (169)
T PF00270_consen 121 SLIVI 125 (169)
T ss_dssp SEEEE
T ss_pred eeecc
Confidence 87774
No 251
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.43 E-value=0.72 Score=50.26 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=45.9
Q ss_pred HhhhcCCCeEEEEecccccccCCCCCcCEEE--------ecCCCCChhHHHHHhhhcccCC
Q 011149 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI--------~~~~P~~~~~y~qr~GR~gR~g 182 (492)
-++|.+|+..|-|-+.+++.||.+..-.-|+ -+.+||+.+.-||..|||.|..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSN 910 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSN 910 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhccccccc
Confidence 3589999999999999999999997655444 5789999999999999999976
No 252
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.29 E-value=0.17 Score=55.40 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHHHc-cC-CeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe-E-EEEeccc
Q 011149 72 TSKRTILSDLITVYA-KG-GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF-T-VLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~-~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~-~-iLVaT~~ 146 (492)
..|...+..+|.... .. .++|||+.-..-+..+...|.. .+....+-|.|+...|.+.+..|..+.. . .|++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 344444444444321 12 3899999988888888777763 5667778899999999999999995432 2 4578889
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEE
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (492)
...|+++-...+|+..|+-|++..-.|.+-|+.|.|..-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999886554444
No 253
>PRK13766 Hef nuclease; Provisional
Probab=87.90 E-value=7 Score=44.19 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=53.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc--c---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~--~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~ 155 (492)
...++||.|||+..+++.++.+... + .+..++|+.+..+|.+.... ..|+|+|+- +..-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChhh
Confidence 4679999999999999988888753 2 67789999999888766543 469999972 234466778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 132 ~~liVv 137 (773)
T PRK13766 132 VSLLIF 137 (773)
T ss_pred CcEEEE
Confidence 888874
No 254
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=86.17 E-value=0.62 Score=41.41 Aligned_cols=16 Identities=38% Similarity=1.259 Sum_probs=14.6
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
||+||+.|||.+.|-+
T Consensus 103 ~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 103 CYRCGERGHIGRNCKD 118 (195)
T ss_pred cccCCCcccccccccc
Confidence 9999999999999964
No 255
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=85.72 E-value=1.5 Score=49.61 Aligned_cols=36 Identities=6% Similarity=0.104 Sum_probs=29.1
Q ss_pred ccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhC
Q 011149 278 SLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY 315 (492)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 315 (492)
.+..+..+..+++++++. +..++++.+|..+|+...
T Consensus 257 ~~~~~~~G~rkVlvATnI--AErsLtIp~V~~VID~Gl 292 (812)
T PRK11664 257 AILPAPAGRRKVVLATNI--AETSLTIEGIRLVVDSGL 292 (812)
T ss_pred HhccccCCCeEEEEecch--HHhcccccCceEEEECCC
Confidence 345567788999999998 789999999988887543
No 256
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=85.07 E-value=1.3 Score=50.05 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=30.2
Q ss_pred ccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCC
Q 011149 278 SLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP 316 (492)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 316 (492)
.+..+..+..+++|+++. +..++++.+|..+|+...+
T Consensus 254 ~~~~~~~G~rkVlVATnI--AErgItIp~V~~VID~Gl~ 290 (819)
T TIGR01970 254 AIKPDPQGRRKVVLATNI--AETSLTIEGIRVVIDSGLA 290 (819)
T ss_pred HHhhcccCCeEEEEecch--HhhcccccCceEEEEcCcc
Confidence 455667788899999998 7899999999888876554
No 257
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=84.89 E-value=6.8 Score=37.66 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=83.4
Q ss_pred CcEEEEeeeCChHH------HHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHHHHH-ccCCeEE
Q 011149 21 RQSMLFSATMPSWV------KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVY-AKGGKTI 92 (492)
Q Consensus 21 ~q~ll~SAT~p~~i------~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~-~~~~~~i 92 (492)
..+-+++.|++... ++++++|... .|.|..+.... .+....+..++..- .+.-++|
T Consensus 3 ~kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~----------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaI 66 (275)
T PF12683_consen 3 YKIGIVTGTVSQSEDEYRGAEELIKKYGDV----------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAI 66 (275)
T ss_dssp EEEEEEE--TTT-HHHHHHHHHHHHHHHHH----------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEE
T ss_pred eEEEEEeCCcccChHHHHHHHHHHHHhCcc----------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEE
Confidence 35678888887654 3455666432 23334433332 23444555555432 2456999
Q ss_pred EEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC------CcCEEEecCCC
Q 011149 93 VFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------NVDLIIHYELP 165 (492)
Q Consensus 93 VF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~------~v~~VI~~~~P 165 (492)
||+....-+-...+.+++ .-.+..+-+.+ ++ --.++.. ..+|.+.+|...+|..|+ .....|||.+|
T Consensus 67 Vv~q~vpGt~~af~kIkekRpDIl~ia~~~-~E-Dp~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfp 140 (275)
T PF12683_consen 67 VVSQAVPGTAEAFRKIKEKRPDILLIAGEP-HE-DPEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFP 140 (275)
T ss_dssp EEE-SS---HHHHHHHHHH-TTSEEEESS---S--HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEET
T ss_pred EEeCCCcchHHHHHHHHhcCCCeEEEcCCC-cC-CHHHHhh----ccCeEeccchhhccHHHHHHHHHcCCceEEEEech
Confidence 999988877777777764 44555565553 22 2334444 467889999999998875 34678888888
Q ss_pred CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH
Q 011149 166 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV 218 (492)
Q Consensus 166 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~ 218 (492)
.+.. |....=| +..++.-.+.++++|..+..|.+
T Consensus 141 rhms-~~~l~~R------------------r~~M~~~C~~lGi~fv~~taPDP 174 (275)
T PF12683_consen 141 RHMS-YELLARR------------------RDIMEEACKDLGIKFVEVTAPDP 174 (275)
T ss_dssp TGGG-SHHHHHH------------------HHHHHHHHHHCT--EEEEEE---
T ss_pred hhcc-hHHHHHH------------------HHHHHHHHHHcCCeEEEEeCCCC
Confidence 7765 4333322 35677777888999988766653
No 258
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=84.45 E-value=7.6 Score=37.09 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=63.4
Q ss_pred ccceeeecCCCCHHHHHHHHhhhcCCC----eEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcc-cCCCCC
Q 011149 111 IIASEALHGDISQHQRERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEG 185 (492)
Q Consensus 111 ~~~~~~lhg~~~~~~r~~~~~~F~~g~----~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~g-R~g~~g 185 (492)
.+.+..++++.+... -.+.++. ..|+|.=+.++||+.++++.+.....-+...++++||.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 377888887654433 3444443 789999999999999999998888888888999999864333 455566
Q ss_pred eEEEecChhhHHHHHHH
Q 011149 186 TAILMFTSSQRRTVRSL 202 (492)
Q Consensus 186 ~~i~l~~~~e~~~~~~l 202 (492)
.|-++.++.-......|
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 78888877655544444
No 259
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=82.56 E-value=18 Score=32.38 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=32.8
Q ss_pred CeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeec-CccceeEeecCHHHHHHHHhh
Q 011149 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIAD-DRVQGAVFDLPEEIAKELLNK 351 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~-~~~~gs~fdv~~~~a~~~i~~ 351 (492)
..++|+|..-. ......+|-.++..+.++.. +.|+-+ .+++++-|+-|.+..+++-.+
T Consensus 9 ~~~kVYVGnL~----~~a~k~eLE~~F~~yG~lrs-----vWvArnPPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 9 GNTKVYVGNLG----SRATKRELERAFSKYGPLRS-----VWVARNPPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CCceEEeccCC----CCcchHHHHHHHHhcCccee-----EEEeecCCCceEEeccCcccHHHHHhhc
Confidence 45677775432 34678899888888876544 344332 223445555555554444433
No 260
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=81.36 E-value=11 Score=42.90 Aligned_cols=103 Identities=15% Similarity=0.224 Sum_probs=66.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-ccc----ccCC---
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAA----RGLD--- 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~----~Gid--- 152 (492)
..++|++.||+..|+.=.+.|.+ .+.+..++|+.++++|+.+++. ..+||++|+ ++. +..|
T Consensus 115 ~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~----pp~IllTNpdMLh~~llr~~~~~~ 190 (851)
T COG1205 115 SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN----PPDILLTNPDMLHYLLLRNHDAWL 190 (851)
T ss_pred CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC----CCCEEEeCHHHHHHHhccCcchHH
Confidence 34779999999887765555543 2568889999999999866555 889999986 221 2211
Q ss_pred --CCCcCEEEe-----cC--CCCChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 153 --IPNVDLIIH-----YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 153 --i~~v~~VI~-----~~--~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
..++.+||. |. .=.++.-.+-|.-|..|.......++..+.+
T Consensus 191 ~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 191 WLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred HHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 234566663 22 1245666677777766655445555555543
No 261
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=80.35 E-value=3.1 Score=37.15 Aligned_cols=46 Identities=37% Similarity=0.636 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEe
Q 011149 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50 (492)
Q Consensus 5 GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~ 50 (492)
.+.+.+..++..++...+++++|||+++.+...+..++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 145 GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 5678888899988889999999999999999999888886665543
No 262
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.79 E-value=0.57 Score=49.86 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhCCCceec
Q 011149 196 RRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~ 213 (492)
.+++..+.+.+-..+..+
T Consensus 263 skfv~y~~~kvlP~l~~l 280 (556)
T PF05918_consen 263 SKFVNYMCEKVLPKLSDL 280 (556)
T ss_dssp HHHHHHHHHHTCCCTT--
T ss_pred HHHHHHHHHHhcCChhhC
Confidence 455666665554444443
No 263
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=77.27 E-value=9.9 Score=42.20 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=48.3
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
..++..+ .+.+++|.++|...|.+.++.+.. ++.+.++.++++.++|...+. .+|+++|+.
T Consensus 89 pa~l~aL-~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 89 PAYLNAL-TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHH-hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 3334444 456899999999999999988774 367889999999988776664 589999986
No 264
>COG4907 Predicted membrane protein [Function unknown]
Probab=75.03 E-value=2.5 Score=43.16 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred HHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHH
Q 011149 306 SVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 348 (492)
Q Consensus 306 ~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~ 348 (492)
-...++++..-+..-.+-.|.+.++.-+.++-.-|.++..+.+
T Consensus 490 aFKnfLsd~s~lke~~pesI~~W~~ylVYatALGV~dkVvkam 532 (595)
T COG4907 490 AFKNFLSDYSQLKEAKPESIHLWEQYLVYATALGVSDKVVKAM 532 (595)
T ss_pred HHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhccHHHHHHHH
Confidence 3345566555555545667777776533444455655555443
No 265
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=73.86 E-value=1.7 Score=29.23 Aligned_cols=18 Identities=6% Similarity=0.115 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSR 433 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~ 433 (492)
..|.+|++.||+.++|+.
T Consensus 5 ~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 5 VRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CcCcccCCCCcchhhCCC
Confidence 569999999999999994
No 266
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=72.53 E-value=22 Score=34.12 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=55.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc----cceeeecCC-CCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI----IASEALHGD-ISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~-~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
..+||+|.+--.|-.|...|... ..|.-|.+. +.-+++...++. ..+.|.|+|+ +-...+.+.++.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~---~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKK---TRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHh---CCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 46899999988888888888753 344444433 455666666544 5788999999 233446677777
Q ss_pred EEE------------ecCCCCChhHHHHHh
Q 011149 158 LII------------HYELPNDPETFVHRS 175 (492)
Q Consensus 158 ~VI------------~~~~P~~~~~y~qr~ 175 (492)
+|| .+|+|.....+++-.
T Consensus 204 ~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL 233 (252)
T PF14617_consen 204 RIVLDWSYLDQKKRSIFDIPETREDLWKLL 233 (252)
T ss_pred EEEEcCCccccccccccccHHHHHHHHHHH
Confidence 766 345565555554443
No 267
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=71.81 E-value=14 Score=40.61 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=43.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.+.+++|.++|+..|.+.++.+.. ++.+.++.|++++++|.... ..+|+++|+
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 467999999999999999988874 36788999999887766544 457999997
No 268
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=70.70 E-value=1.7e+02 Score=32.26 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=47.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cc-------ceeeecCCCCHHHHHHHHhhhcC----CCeEEEEec--ccccccCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-II-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLDI 153 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~-------~~~~lhg~~~~~~r~~~~~~F~~----g~~~iLVaT--~~~~~Gidi 153 (492)
++-+++|+|+.+-..++.+.+.+ ++ +.+++-..-+ -+.+++.|.. |.-.||+|- --+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47899999999988888887774 21 1222222211 2445555532 343466554 578999999
Q ss_pred CC--cCEEEecCCCC
Q 011149 154 PN--VDLIIHYELPN 166 (492)
Q Consensus 154 ~~--v~~VI~~~~P~ 166 (492)
.+ ...||..++|.
T Consensus 706 ~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccEEEEeecCC
Confidence 64 45788888775
No 269
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=70.47 E-value=12 Score=28.13 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=40.3
Q ss_pred EEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccccc
Q 011149 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (492)
.|+.|....++..+.+.......+.++.|.....+....++++... ..|+|++|--..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 5888999999988888776444566666665555556666665543 5799999854443
No 270
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=69.68 E-value=37 Score=30.00 Aligned_cols=85 Identities=25% Similarity=0.391 Sum_probs=49.2
Q ss_pred ccHHHH-HHHHHHHHcc--CCeEEEEeCChHHHHHHHHHHHcc------cceeeecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 72 TSKRTI-LSDLITVYAK--GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
..|... +..++..+.. ..++||.+++...+.++...+... .....+++... ...++.+.++...|++
T Consensus 35 sGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~ 110 (201)
T smart00487 35 SGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILV 110 (201)
T ss_pred CchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEE
Confidence 346553 3333343333 368999999999999888877742 22344555432 2334445555558999
Q ss_pred ecc-----ccccc-CCCCCcCEEE
Q 011149 143 ATD-----VAARG-LDIPNVDLII 160 (492)
Q Consensus 143 aT~-----~~~~G-idi~~v~~VI 160 (492)
+|. ..... ++...+.++|
T Consensus 111 ~t~~~l~~~~~~~~~~~~~~~~iI 134 (201)
T smart00487 111 TTPGRLLDLLENDLLELSNVDLVI 134 (201)
T ss_pred eChHHHHHHHHcCCcCHhHCCEEE
Confidence 983 22222 3555566655
No 271
>PHA00370 III attachment protein
Probab=69.51 E-value=23 Score=33.52 Aligned_cols=7 Identities=29% Similarity=-0.002 Sum_probs=2.8
Q ss_pred eeccCCC
Q 011149 361 KITKLPA 367 (492)
Q Consensus 361 ~~~~lp~ 367 (492)
.++..+.
T Consensus 75 ~P~g~~~ 81 (297)
T PHA00370 75 KPTGSAD 81 (297)
T ss_pred eeccccc
Confidence 3444443
No 272
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=69.49 E-value=16 Score=41.49 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=48.2
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
|..++..+ .+..++|.++|+..|.+.++.+.. ++.+.+++|+++..+|...+ ..+|+++|+-
T Consensus 114 Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 114 LPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 33344444 456799999999999999988874 36788999999999887665 3689999983
No 273
>COG4907 Predicted membrane protein [Function unknown]
Probab=69.38 E-value=3.8 Score=41.89 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=10.9
Q ss_pred CCCcEEEEeeeCChH
Q 011149 19 PKRQSMLFSATMPSW 33 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~ 33 (492)
.+..+..++-|+|..
T Consensus 116 ~e~~tf~~vy~~~~a 130 (595)
T COG4907 116 NEVRTFKFVYTLPEA 130 (595)
T ss_pred ccceEEEeeeeccce
Confidence 356778888888754
No 274
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=68.25 E-value=30 Score=33.17 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=35.5
Q ss_pred cCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc
Q 011149 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 111 (492)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~ 111 (492)
....+..++|..+.+.+.++..+++|++|.++++.+.+.|++.
T Consensus 169 LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 169 LDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred EcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 3334567778888777878899999999999999999999863
No 275
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=67.62 E-value=46 Score=36.86 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=71.8
Q ss_pred cCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccc---eeee--------------------cCCC----
Q 011149 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA---SEAL--------------------HGDI---- 121 (492)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~---~~~l--------------------hg~~---- 121 (492)
+....|.-++..++... +.++||.++++..|.+++..|+..++ |..+ +-..
T Consensus 37 vtgs~kt~~~a~~~~~~--~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~ 114 (655)
T TIGR00631 37 VTGSGKTFTMANVIAQV--NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASIND 114 (655)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCCh
Confidence 44556777777777654 46899999999999999999976432 2222 1111
Q ss_pred -CHHHHHHHHhhhcCCCeEEEEecccccccCCCCC----cCEEEecCCCCChhHHHHHhh
Q 011149 122 -SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 176 (492)
Q Consensus 122 -~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~----v~~VI~~~~P~~~~~y~qr~G 176 (492)
-...|..++.++..+.-.|+|||-.+-.++--|. ..+.+..+-..+.+.++.+.-
T Consensus 115 ~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv 174 (655)
T TIGR00631 115 EIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLV 174 (655)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHH
Confidence 1346788888887776678888866666665443 345666666777777766654
No 276
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=67.62 E-value=18 Score=40.02 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=49.3
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHH--cccceeeecCCCCHHHHHHHHhhhcCC--CeEEEEeccccccc
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAARG 150 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~~~~~G 150 (492)
+|.....+++-||.||+.-.-..+.+.-+ -.+.|..+||. |.+|.++-..+..+ .++|||+|--++.+
T Consensus 441 yLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 441 YLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 44444557888999998665555544333 24789999997 79999998888776 78999999655543
No 277
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=67.13 E-value=29 Score=28.56 Aligned_cols=70 Identities=29% Similarity=0.308 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHcc----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 73 SKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 73 ~k~~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
-|...+..++.... ...++||+|+++..++++.+.+... ..+..+++.....+.... ......|+++|.
T Consensus 12 GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~ 87 (144)
T cd00046 12 GKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----LSGKTDIVVGTP 87 (144)
T ss_pred chhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH----hcCCCCEEEECc
Confidence 45444444333332 4579999999999999998888752 557778877655544411 123567888886
Q ss_pred c
Q 011149 146 V 146 (492)
Q Consensus 146 ~ 146 (492)
.
T Consensus 88 ~ 88 (144)
T cd00046 88 G 88 (144)
T ss_pred H
Confidence 4
No 278
>PRK00254 ski2-like helicase; Provisional
Probab=66.25 E-value=15 Score=41.22 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=48.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----ccc-cCCCCCc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPNV 156 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gidi~~v 156 (492)
...++|+.+|+++.+.+.++.+.. .+.+..++|+.+...+ .+ +..+|+|+|+- +.. ...+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-----~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-----GKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-----ccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 457999999999999999988763 4678889999875432 11 35689999962 211 1346788
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
.+||.
T Consensus 140 ~lvVi 144 (720)
T PRK00254 140 KLVVA 144 (720)
T ss_pred CEEEE
Confidence 88873
No 279
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=66.09 E-value=21 Score=40.73 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=43.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
...++|.++|+..|.++++.+.. ++.+.++.|+++..++...+ ..+|+|+|+-
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 34688999999999999998874 36788899999998876554 2689999983
No 280
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.84 E-value=12 Score=38.64 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=17.9
Q ss_pred CCCCCcccCCCCCcccCCCCC
Q 011149 472 SFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 472 ~~~~~c~~cg~~gh~a~~cp~ 492 (492)
-.+..|++|++.|||...||.
T Consensus 156 ppsy~c~rc~~~g~wikacpt 176 (448)
T KOG0314|consen 156 PPSYKCVKCPTPGPWIKACPT 176 (448)
T ss_pred CCCcceecCCCCCccceeccc
Confidence 345669999999999999994
No 281
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=64.38 E-value=21 Score=38.58 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=50.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 88 GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
++-+||..|-...-+.=...|. .++.+..+++.++.+++..++..+..|.+++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 5789999998887765555555 589999999999999999999999999999997776
No 282
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=63.07 E-value=9.1 Score=37.15 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=14.0
Q ss_pred CCChhHHHHHhhhcccCC
Q 011149 165 PNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 165 P~~~~~y~qr~GR~gR~g 182 (492)
+.+++.|-.|.-+....|
T Consensus 76 g~~IE~ya~rlfd~W~lG 93 (271)
T COG1512 76 GETIEQYATRLFDKWKLG 93 (271)
T ss_pred CCCHHHHHHHHHHhcCCC
Confidence 577889999988875555
No 283
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=62.44 E-value=21 Score=28.41 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=31.4
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCC
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (492)
+..+.++.+++|+|.+-..+...+..|.. ++.+..|.|++.
T Consensus 55 ~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 55 LDQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred HhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 44445667899999987778888888875 777888888863
No 284
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=62.39 E-value=13 Score=43.02 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=67.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P 165 (492)
...++|||+.-...-+.+...+.. .+.... -++ -+.-...+..|++ --.+|+=+...+.|+|+-+..||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~-~~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQL-DGE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhh-ccC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 346899998766655555555442 332221 121 2344566777776 22356777888999999999999999999
Q ss_pred CChhHHHHHhhhcccCCCCC
Q 011149 166 NDPETFVHRSGRTGRAGKEG 185 (492)
Q Consensus 166 ~~~~~y~qr~GR~gR~g~~g 185 (492)
.++..-.|-+||..|.|++-
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cCchHHHhhhhhhhhccccc
Confidence 99999999999999999654
No 285
>PRK02362 ski2-like helicase; Provisional
Probab=62.36 E-value=13 Score=41.86 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cccc
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG 150 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G 150 (492)
.++..+.+..++|+.+|+++.|.+.+..++. ++.+..++|++..... .+ +..+|+|||+- +..+
T Consensus 59 ail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~~~~IiV~Tpek~~~llr~~ 131 (737)
T PRK02362 59 AMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--GDNDIIVATSEKVDSLLRNG 131 (737)
T ss_pred HHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--CCCCEEEECHHHHHHHHhcC
Confidence 3445554678999999999999999998874 3568888998754331 11 34679999962 2222
Q ss_pred -CCCCCcCEEEe
Q 011149 151 -LDIPNVDLIIH 161 (492)
Q Consensus 151 -idi~~v~~VI~ 161 (492)
..+.++.+||.
T Consensus 132 ~~~l~~v~lvVi 143 (737)
T PRK02362 132 APWLDDITCVVV 143 (737)
T ss_pred hhhhhhcCEEEE
Confidence 23567888873
No 286
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=62.03 E-value=19 Score=28.13 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.0
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCC
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (492)
+..+.+..++++||.+-..+...+..|+. ++.+..|.|++.
T Consensus 45 ~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 45 LNELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HHhcCCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 33345567899999987778888888875 567888999864
No 287
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=61.92 E-value=99 Score=31.14 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=83.5
Q ss_pred EEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHH-HccCCeEEEEeCChHHH
Q 011149 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDA 101 (492)
Q Consensus 23 ~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~ 101 (492)
.+-.+.|+++--+..+...+.. . ..........+.-..|.+.+...++. +..+..+.|-.|..+.|
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~------i-------~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVc 157 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQY------I-------KQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVC 157 (441)
T ss_pred eeeeccccChhHHHHHHHHHHH------H-------HhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccch
Confidence 6667788776655544433210 0 01112233444455677766665544 35678999999999999
Q ss_pred HHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-ccccCCCCCcCEEEe--cC-CCCChhHHHHH
Q 011149 102 DEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIPNVDLIIH--YE-LPNDPETFVHR 174 (492)
Q Consensus 102 ~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~Gidi~~v~~VI~--~~-~P~~~~~y~qr 174 (492)
.+|+..|+.. ..+..|||+-++.. + ..++|||.. +-|= -...+++|. .| +|.+.+..+|-
T Consensus 158 lEl~~Rlk~aF~~~~I~~Lyg~S~~~f--------r---~plvVaTtHQLlrF--k~aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 158 LELYPRLKQAFSNCDIDLLYGDSDSYF--------R---APLVVATTHQLLRF--KQAFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred HHHHHHHHHhhccCCeeeEecCCchhc--------c---ccEEEEehHHHHHH--HhhccEEEEeccccccccCCHHHHH
Confidence 9999999963 56889999966543 3 468888863 2121 123455553 22 68888888888
Q ss_pred hhhcccC
Q 011149 175 SGRTGRA 181 (492)
Q Consensus 175 ~GR~gR~ 181 (492)
+=+-.|-
T Consensus 225 Av~~ark 231 (441)
T COG4098 225 AVKKARK 231 (441)
T ss_pred HHHHhhc
Confidence 8777764
No 288
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=61.89 E-value=53 Score=34.04 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=15.8
Q ss_pred CCCChhHHHHHHhhhCCCCcCcc
Q 011149 300 GFMSARSVMGFLSDVYPTAADEI 322 (492)
Q Consensus 300 ~~~~~~~i~~~i~~~~~~~~~~i 322 (492)
...++.+|-.++....++....|
T Consensus 298 ~da~~~~l~~~Fk~FG~Ik~~~I 320 (419)
T KOG0116|consen 298 PDATPAELEEVFKQFGPIKEGGI 320 (419)
T ss_pred CCCCHHHHHHHHhhcccccccce
Confidence 34678888888877777665443
No 289
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=61.75 E-value=1.1e+02 Score=26.60 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=33.4
Q ss_pred eEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecC----ccceeEeecC-HHHHHHHHhhcC
Q 011149 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDLP-EEIAKELLNKQI 353 (492)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~----~~~gs~fdv~-~~~a~~~i~~~~ 353 (492)
..+|+|..= ...++..+|..++....+ |-.+.+..+. ...++||+-. ++.++.+++.+.
T Consensus 34 ~~~lfVgnL----~~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln 97 (144)
T PLN03134 34 STKLFIGGL----SWGTDDASLRDAFAHFGD-----VVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97 (144)
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHhcCCC-----eEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 456777532 345788999988876433 4445554321 1234666663 455666666543
No 290
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=61.12 E-value=19 Score=40.51 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=50.1
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-cccc-------CCCCCc
Q 011149 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG-------LDIPNV 156 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~G-------idi~~v 156 (492)
.+|-.+|-+.....+-..|.. ++.+..-||+++|.+|.+..++ --+|||+|+- ++-- =.+.+|
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC----CCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 566667888888877777652 5788999999999999977766 7789999981 1111 125678
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
.+||.
T Consensus 151 r~VIV 155 (814)
T COG1201 151 RYVIV 155 (814)
T ss_pred cEEEe
Confidence 88883
No 291
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=59.83 E-value=30 Score=38.92 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCC-HHHHHHHHhhhcCCCeEEEEecc
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDIS-QHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~-~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
..++..+ .+..++|.++|+..|.+.++.+.. ++.+..+.|+++ .++|..+. ..+|+++|+
T Consensus 111 p~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 111 PLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 3333444 568999999999999998888764 477899999999 77777543 268999995
No 292
>PRK01172 ski2-like helicase; Provisional
Probab=59.55 E-value=20 Score=39.88 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=49.0
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cccc-
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG- 150 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G- 150 (492)
+++.+....++|+.+|+++.|.+.++.+.+ ++.+..++|+...... . + ...+|+|+|+- +.+.
T Consensus 58 il~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~---~--~~~dIiv~Tpek~~~l~~~~~ 130 (674)
T PRK01172 58 IYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--F---I--KRYDVVILTSEKADSLIHHDP 130 (674)
T ss_pred HHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh--h---h--ccCCEEEECHHHHHHHHhCCh
Confidence 344444567899999999999999988864 3567778888654321 1 1 24589999981 2222
Q ss_pred CCCCCcCEEE
Q 011149 151 LDIPNVDLII 160 (492)
Q Consensus 151 idi~~v~~VI 160 (492)
..+.++++||
T Consensus 131 ~~l~~v~lvV 140 (674)
T PRK01172 131 YIINDVGLIV 140 (674)
T ss_pred hHHhhcCEEE
Confidence 3366788877
No 293
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=59.12 E-value=1.1e+02 Score=30.24 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHHH-----cc-CCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHh------------
Q 011149 71 ATSKRTILSDLITVY-----AK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLN------------ 131 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~-----~~-~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~------------ 131 (492)
...|+..|.++++.+ .. +.++||.++..++.+.|...|. +.+...-+.|.+...+....-+
T Consensus 94 tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~ 173 (297)
T PF11496_consen 94 TSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNS 173 (297)
T ss_dssp T-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--------------
T ss_pred cCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccccccccccccc
Confidence 356899999999887 32 3478999999999998888877 4666666666554444332220
Q ss_pred hh---cCCCeEEE-Eeccccccc----CCCCCcCEEEecCCCCCh-hHHHHHhhhcccCCCCCeEEEecCh
Q 011149 132 GF---RQGKFTVL-VATDVAARG----LDIPNVDLIIHYELPNDP-ETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 132 ~F---~~g~~~iL-VaT~~~~~G----idi~~v~~VI~~~~P~~~-~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
.. ..-...|- +.|+-+... ++-..+++||-+|.-.++ ...+|++=...|..+.--++.++..
T Consensus 174 ~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~ 244 (297)
T PF11496_consen 174 KKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPS 244 (297)
T ss_dssp --------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEET
T ss_pred ccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeC
Confidence 00 11234454 444434332 233477899999986553 3455555343433233334444433
No 294
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=58.50 E-value=39 Score=30.73 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=4.6
Q ss_pred eEEEEEeec
Q 011149 286 WVTLQLTRD 294 (492)
Q Consensus 286 ~~~~~~~~~ 294 (492)
.+++.|++.
T Consensus 28 va~fsVAv~ 36 (182)
T PRK06958 28 VANIRLATT 36 (182)
T ss_pred EEEEEEEec
Confidence 445555543
No 295
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=56.77 E-value=5.6 Score=34.00 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=14.6
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
-.|..|+ -.||...||.
T Consensus 107 v~CR~Ck-GdH~T~~CPy 123 (128)
T PF12353_consen 107 VKCRICK-GDHWTSKCPY 123 (128)
T ss_pred EEeCCCC-CCcccccCCc
Confidence 4599996 8899999993
No 296
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=56.12 E-value=5 Score=43.90 Aligned_cols=15 Identities=53% Similarity=1.460 Sum_probs=14.7
Q ss_pred cccCCCCCcccCCCC
Q 011149 477 CFNCGKSGHRASECP 491 (492)
Q Consensus 477 c~~cg~~gh~a~~cp 491 (492)
||.||++||.+.||.
T Consensus 263 C~~cgq~gh~~~dc~ 277 (931)
T KOG2044|consen 263 CFLCGQTGHEAKDCE 277 (931)
T ss_pred chhhcccCCcHhhcC
Confidence 999999999999997
No 297
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=55.90 E-value=1e+02 Score=34.14 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=69.6
Q ss_pred cCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccc---eeee--------------------cCCC--C-
Q 011149 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA---SEAL--------------------HGDI--S- 122 (492)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~---~~~l--------------------hg~~--~- 122 (492)
+....|..++..++... +.++||.+++...|++++..|...++ |..+ +-.. +
T Consensus 40 l~gs~ka~lia~l~~~~--~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~ 117 (652)
T PRK05298 40 VTGSGKTFTMANVIARL--QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINE 117 (652)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCCh
Confidence 44456776666666543 46899999999999999999975321 2222 1111 1
Q ss_pred --HHHHHHHHhhhcCCCeEEEEecccccccCCCCC----cCEEEecCCCCChhHHHHHhhh
Q 011149 123 --QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSGR 177 (492)
Q Consensus 123 --~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~----v~~VI~~~~P~~~~~y~qr~GR 177 (492)
..+|..++.++..++..|+|+|-.+-.++--|+ ..+.+..+-..+.+.++.+.-.
T Consensus 118 ~~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~ 178 (652)
T PRK05298 118 EIERLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVD 178 (652)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHH
Confidence 346888899988776667777754445554332 3355666777777777666543
No 298
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=55.65 E-value=39 Score=29.38 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=51.7
Q ss_pred CcccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHcc-cceeeecCCCCHHHHHHHHhhhcCCCeEEEEe-ccc
Q 011149 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA-TDV 146 (492)
Q Consensus 70 ~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa-T~~ 146 (492)
....+...+..|+.. +..+.+++|+|++.+.++.|-+.|=.. -....=|+-.... . .....|+|+ ++.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~--------~-~~~~PV~l~~~~~ 80 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG--------P-AAGQPVLLTWPGK 80 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC--------C-CCCCCEEEEcCCC
Confidence 445677778887755 456789999999999999999998642 1222234421111 0 124578887 332
Q ss_pred ccccCCCCCcCEEEecCC
Q 011149 147 AARGLDIPNVDLIIHYEL 164 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~ 164 (492)
.+.+..+++||.+.
T Consensus 81 ----~~~~~~~~LinL~~ 94 (142)
T PRK05728 81 ----RNANHRDLLINLDG 94 (142)
T ss_pred ----CCCCCCcEEEECCC
Confidence 23455677888764
No 299
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=55.52 E-value=2.2e+02 Score=31.05 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=31.3
Q ss_pred EEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecC-HHHHHHHHhhcC
Q 011149 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQI 353 (492)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~-~~~a~~~i~~~~ 353 (492)
.+|+|..- ...++..+|..++....+ -+|-++.+..++ +||+-. .+.|++.++.+.
T Consensus 234 k~LfVgNL----~~~~tee~L~~~F~~f~~---G~I~rV~~~rgf----AFVeF~s~e~A~kAi~~ln 290 (578)
T TIGR01648 234 KILYVRNL----MTTTTEEIIEKSFSEFKP---GKVERVKKIRDY----AFVHFEDREDAVKAMDELN 290 (578)
T ss_pred cEEEEeCC----CCCCCHHHHHHHHHhcCC---CceEEEEeecCe----EEEEeCCHHHHHHHHHHhC
Confidence 45666432 235788889888876521 234456666555 566553 344555555443
No 300
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=55.11 E-value=23 Score=32.41 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=42.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCH--------HHHHHHHhhhcCCCe-EEEEeccccccc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQ--------HQRERTLNGFRQGKF-TVLVATDVAARG 150 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~--------~~r~~~~~~F~~g~~-~iLVaT~~~~~G 150 (492)
.+..+|..+.+.+++..+.+.=.-.=...+|||-+++ -.-...+++..++.+ .|++||+.-..|
T Consensus 77 Rd~~~icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 77 RDKSQLCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred cCCceEEEEcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 3567888899888887765543322224456765543 234667788888888 899999865554
No 301
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=54.71 E-value=2.4e+02 Score=28.48 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=31.2
Q ss_pred EEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecC----ccceeEeecC-HHHHHHHHhhcCC
Q 011149 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDLP-EEIAKELLNKQIP 354 (492)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~----~~~gs~fdv~-~~~a~~~i~~~~~ 354 (492)
++|+|..- ...++..+|..++..... |-.+.+..+. ....+||+.. .+.|++.++.+..
T Consensus 194 ~~lfV~nL----p~~vtee~L~~~F~~fG~-----V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 194 TNLYVTNL----PRTITDDQLDTIFGKYGQ-----IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred ceeEEeCC----CCcccHHHHHHHHHhcCC-----EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45666422 345788888888866543 3334444321 1124566663 3555666665443
No 302
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=53.87 E-value=24 Score=36.28 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=56.0
Q ss_pred EEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC--CeEEE
Q 011149 65 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVL 141 (492)
Q Consensus 65 ~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iL 141 (492)
.|+..+...-..+...|-..+ ..+-+|||.|-...+..-...|.. .+++..|.+.|+..+|.+++-++..- .+++|
T Consensus 39 VyVsMPTGaGKSLCyQLPaL~-~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 39 VYVSMPTGAGKSLCYQLPALV-HGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred EEEeccCCCchhhhhhchHHH-hCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 344444433223333333333 345899999998888766666664 78899999999999999999998753 57788
Q ss_pred Eecc
Q 011149 142 VATD 145 (492)
Q Consensus 142 VaT~ 145 (492)
--|+
T Consensus 118 YITP 121 (641)
T KOG0352|consen 118 YITP 121 (641)
T ss_pred EEch
Confidence 8776
No 303
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=52.05 E-value=49 Score=29.74 Aligned_cols=122 Identities=21% Similarity=0.223 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHhCC-CCCcEEEEeeeC-ChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHH
Q 011149 4 VGFEEDVELILENLP-PKRQSMLFSATM-PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~-~~~q~ll~SAT~-p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (492)
..|.+++..||+.+. .+.++.+.|-|- |++.+++.+.+.-+..... ......-..+ .......|...+..|
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~-----~~~~~~~F~~--~eI~~gsK~~Hf~~i 116 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGD-----GVPLIEYFDY--LEIYPGSKTTHFRRI 116 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C---------------CCECE--EEESSS-HHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccc-----cccchhhcch--hheecCchHHHHHHH
Confidence 347788999998886 477888888774 6666666665433300000 0111111222 233345788888887
Q ss_pred HHHHccCCeEEEEe-CChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcC
Q 011149 82 ITVYAKGGKTIVFT-QTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ 135 (492)
Q Consensus 82 l~~~~~~~~~iVF~-~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~ 135 (492)
.+...-...-++|+ ......+.+.. -++.++....+|+.+.=++-+++|++
T Consensus 117 ~~~tgI~y~eMlFFDDe~~N~~~v~~---lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 117 HRKTGIPYEEMLFFDDESRNIEVVSK---LGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp HHHH---GGGEEEEES-HHHHHHHHT---TT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred HHhcCCChhHEEEecCchhcceeeEe---cCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 76654333335555 44444444322 24445555578999988888888864
No 304
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=51.17 E-value=83 Score=28.47 Aligned_cols=64 Identities=9% Similarity=0.161 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHccCC-eEEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCe
Q 011149 75 RTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKF 138 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~-~~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (492)
.+++..+++.....+ ++-++-.+...++.+++.|+.. +.+...||-+++++.+.+++..+....
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~ 101 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGA 101 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCC
Confidence 455666666553333 5555666777778888888863 445556899988887777777665443
No 305
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=49.26 E-value=47 Score=31.64 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc
Q 011149 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (492)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~ 110 (492)
++.....++..+...+..|.|+.|+..+.........
T Consensus 49 ~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~ 85 (252)
T COG0052 49 RLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAE 85 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHH
Confidence 4444555666666667889999999999887776654
No 306
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=49.18 E-value=84 Score=28.14 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHccC-CeEEEEeCChHHHHHHHHHHHccc---cee-eecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 75 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII---ASE-ALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 75 ~~~l~~ll~~~~~~-~~~iVF~~t~~~~~~l~~~l~~~~---~~~-~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.+++..++...... .++-++-.+.+.++.++..|++.+ .++ ..|+-++..+.+.+++..+....+||
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv 105 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIV 105 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 44555566554333 455566677777888888888643 343 56677888888999988776554433
No 307
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=48.46 E-value=63 Score=36.62 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=47.7
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
+..++..+ .+..+-|.++|...|.+.++.+.. ++.+.++.++++.++|..++. .+|+++|+
T Consensus 113 lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 113 LPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred HHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 33334444 356788999999999998888764 467899999999999888864 67999998
No 308
>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]
Probab=47.59 E-value=4.6 Score=41.28 Aligned_cols=15 Identities=47% Similarity=1.156 Sum_probs=14.4
Q ss_pred CcccCCCCCcccCCC
Q 011149 476 ACFNCGKSGHRASEC 490 (492)
Q Consensus 476 ~c~~cg~~gh~a~~c 490 (492)
+|-|||..+|-.+||
T Consensus 114 ACeNCGAmtHk~KDC 128 (529)
T KOG2560|consen 114 ACENCGAMTHKVKDC 128 (529)
T ss_pred hhhhhhhhhcchHHH
Confidence 499999999999999
No 309
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=45.86 E-value=1.1e+02 Score=27.83 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=34.6
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCc--eEEeec
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL--NIDLVG 52 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~--~i~~~~ 52 (492)
+|-||.+-++.|-.+ +.+++.+|+-|.+-|..+.+.+..... .++++.
T Consensus 74 Idp~fKef~e~ike~---di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 74 IDPGFKEFVEWIKEH---DIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred cCccHHHHHHHHHHc---CCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 455666666666543 789999999999999999998885332 355543
No 310
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=45.80 E-value=1.2e+02 Score=26.50 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=49.6
Q ss_pred HHHHHHH-HHccCCeEEEEeCChHHHHHHHHHHHcc-cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 77 ILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 77 ~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
++..|+. .+..+.+++|-|.+...++.|-+.|=.. -....=|+-.. +.... .-.|+|++.-- -=+-+
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~--------e~~~~-~qPIli~~~~~--~pn~~ 85 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAG--------EPPPA-GQPILIAWPGG--NPNSA 85 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCC--------CCCCC-CCCEEEEcCCC--CCCCC
Confidence 5666654 4567889999999999999999988642 12222344211 12222 33599988632 23456
Q ss_pred CcCEEEecCCCC
Q 011149 155 NVDLIIHYELPN 166 (492)
Q Consensus 155 ~v~~VI~~~~P~ 166 (492)
.++++||.-.+.
T Consensus 86 ~~~~lInl~d~~ 97 (144)
T COG2927 86 RVDLLINLADEF 97 (144)
T ss_pred ceeEEEeccccC
Confidence 778899865543
No 311
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=45.78 E-value=1.3e+02 Score=34.92 Aligned_cols=84 Identities=17% Similarity=0.303 Sum_probs=55.6
Q ss_pred HHHHHHhh--hcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccC--C-CCCeEEEecChhhHHHH
Q 011149 125 QRERTLNG--FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAILMFTSSQRRTV 199 (492)
Q Consensus 125 ~r~~~~~~--F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~--g-~~g~~i~l~~~~e~~~~ 199 (492)
.+.....+ ++....+|||.+|.+-.|.|-|.++.+ -.|-|.---.++|-+-||.|. + ++.-.|+.+..-.....
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~ 657 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALK 657 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHH
Confidence 33444455 345678999999999999999977755 456677777899999999994 3 23333444444444444
Q ss_pred HHHHHHhCCC
Q 011149 200 RSLERDVGCK 209 (492)
Q Consensus 200 ~~l~~~~~~~ 209 (492)
+.+.-+....
T Consensus 658 ~Al~~Y~~~~ 667 (962)
T COG0610 658 KALKLYSNEG 667 (962)
T ss_pred HHHHHhhccc
Confidence 5554444433
No 312
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=45.23 E-value=46 Score=36.34 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=18.1
Q ss_pred CCChhHHHHHHhhhCCCCcCcc
Q 011149 301 FMSARSVMGFLSDVYPTAADEI 322 (492)
Q Consensus 301 ~~~~~~i~~~i~~~~~~~~~~i 322 (492)
.++++.|+.+++..+.+..++|
T Consensus 523 ~it~d~I~~~Va~~f~v~~~dl 544 (617)
T PRK14086 523 EITAAAIMAATADYFGLTVEDL 544 (617)
T ss_pred cCCHHHHHHHHHHHhCCCHHHH
Confidence 4788899999998888877775
No 313
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=45.06 E-value=1.1e+02 Score=27.36 Aligned_cols=65 Identities=11% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHHcc---cceee-ecCCCCHHHHHHHHhhhcCCCeE
Q 011149 75 RTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI---IASEA-LHGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 75 ~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~~---~~~~~-lhg~~~~~~r~~~~~~F~~g~~~ 139 (492)
.+++..+++.... +.++-++-.+.+.++.+++.|++. +.++. .|+-+...+...+++..+....+
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pd 101 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGAD 101 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCC
Confidence 4455566665543 456667777788888888888863 44444 67888777777677776654433
No 314
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=44.82 E-value=83 Score=27.80 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=52.1
Q ss_pred cCcccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHccc-ceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 69 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 69 ~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~~-~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
.....+...+..|+.. +..+.+++|.|++.+.++.|-+.|=..- ....=|+-..... .....|+|+++.
T Consensus 9 L~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~---------~a~~PV~L~~~~ 79 (154)
T PRK06646 9 TSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ---------PEKQPIYITDEL 79 (154)
T ss_pred eCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---------CCCCCEEEecCC
Confidence 3566788888888755 4667899999999999999998886421 1222344211110 124578887543
Q ss_pred ccccCCCCCcCEEEecCC
Q 011149 147 AARGLDIPNVDLIIHYEL 164 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~ 164 (492)
- +.+..+++||++.
T Consensus 80 ~----~p~~~~vLiNL~~ 93 (154)
T PRK06646 80 Q----NPNNASVLVIISP 93 (154)
T ss_pred C----CCCCCCEEEECCC
Confidence 1 2225567888765
No 315
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=44.80 E-value=41 Score=37.73 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=57.0
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCC--CCCe-----------EEEecChhhHHHHHHHH
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGT-----------AILMFTSSQRRTVRSLE 203 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g--~~g~-----------~i~l~~~~e~~~~~~l~ 203 (492)
-.+.|++-.++-+|.|=|+|=.++-+....|..+=+|.+||.-|.. ..|. -.+++...+..+++.|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4689999999999999999999999999899999999999999942 3332 23456677778888777
Q ss_pred HHhC
Q 011149 204 RDVG 207 (492)
Q Consensus 204 ~~~~ 207 (492)
+.+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
Confidence 6654
No 316
>PF13245 AAA_19: Part of AAA domain
Probab=44.78 E-value=50 Score=25.19 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=33.3
Q ss_pred cCcccHHHHHHHHHHHHc-c----CCeEEEEeCChHHHHHHHHHHHcccc-eeeecC
Q 011149 69 TTATSKRTILSDLITVYA-K----GGKTIVFTQTKRDADEVSLALTSIIA-SEALHG 119 (492)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~-~----~~~~iVF~~t~~~~~~l~~~l~~~~~-~~~lhg 119 (492)
.+-.-|..++..++..+. . +.+++|.++|+..++++.+.|..... +..+|+
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl~~~~~~~~T~h~ 74 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERLGLGVPFAMTIHS 74 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHHcCCCcchhhHHH
Confidence 445567765555554432 1 57899999999999999998822222 445553
No 317
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=44.38 E-value=29 Score=33.72 Aligned_cols=6 Identities=50% Similarity=0.733 Sum_probs=2.5
Q ss_pred EEEecc
Q 011149 140 VLVATD 145 (492)
Q Consensus 140 iLVaT~ 145 (492)
+||+++
T Consensus 103 LlVa~~ 108 (271)
T COG1512 103 LLVAMN 108 (271)
T ss_pred EEEEcC
Confidence 444443
No 318
>COG1204 Superfamily II helicase [General function prediction only]
Probab=44.10 E-value=45 Score=37.58 Aligned_cols=77 Identities=26% Similarity=0.347 Sum_probs=52.8
Q ss_pred HHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHH---c-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc----cc
Q 011149 77 ILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT---S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VA 147 (492)
Q Consensus 77 ~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~---~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~----~~ 147 (492)
.+..++..+.+ +.++|-.||++..|++.++.++ . +++|..++|+++... +.+ .+.+|+|+|+ ++
T Consensus 64 A~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~-~~l------~~~~ViVtT~EK~Dsl 136 (766)
T COG1204 64 ALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD-ERL------ARYDVIVTTPEKLDSL 136 (766)
T ss_pred HHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch-hhh------ccCCEEEEchHHhhHh
Confidence 33445555544 4799999999999999999998 2 688999999976443 111 2568999996 22
Q ss_pred ccc--CCCCCcCEEE
Q 011149 148 ARG--LDIPNVDLII 160 (492)
Q Consensus 148 ~~G--idi~~v~~VI 160 (492)
-|- .=+.+|++||
T Consensus 137 ~R~~~~~~~~V~lvV 151 (766)
T COG1204 137 TRKRPSWIEEVDLVV 151 (766)
T ss_pred hhcCcchhhcccEEE
Confidence 222 1234678777
No 319
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=44.00 E-value=70 Score=27.56 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHcc-cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCC
Q 011149 75 RTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (492)
Q Consensus 75 ~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid 152 (492)
...+..|+.. +..+.+++|+|++.+.++.|-+.|-.. -....=|+-.... ......|+|+++... ..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 4666666654 456789999999999999999998642 1111122211110 011247999987643 12
Q ss_pred CCCcCEEEecCC
Q 011149 153 IPNVDLIIHYEL 164 (492)
Q Consensus 153 i~~v~~VI~~~~ 164 (492)
.+..+++||.+.
T Consensus 84 ~~~~~vLinL~~ 95 (137)
T PF04364_consen 84 NNHADVLINLSG 95 (137)
T ss_dssp -S--SEEEE--S
T ss_pred CCCCCEEEECCC
Confidence 334688999775
No 320
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=43.30 E-value=92 Score=28.26 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=19.9
Q ss_pred CChhHHHHHHhhhCCCCcCccccEEEeecCc-cceeEe--ecCHHHHHHH
Q 011149 302 MSARSVMGFLSDVYPTAADEIGKIHIIADDR-VQGAVF--DLPEEIAKEL 348 (492)
Q Consensus 302 ~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~-~~gs~f--dv~~~~a~~~ 348 (492)
|..++|-.++.++.+ |-.|.+....+ ..++|| +-|.+.-+.+
T Consensus 18 iRekeieDlFyKyg~-----i~~ieLK~r~g~ppfafVeFEd~RDAeDAi 62 (241)
T KOG0105|consen 18 IREKEIEDLFYKYGR-----IREIELKNRPGPPPFAFVEFEDPRDAEDAI 62 (241)
T ss_pred hhhccHHHHHhhhcc-----eEEEEeccCCCCCCeeEEEecCccchhhhh
Confidence 445556666655544 44555544333 223444 4454443333
No 321
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=42.24 E-value=13 Score=38.31 Aligned_cols=16 Identities=50% Similarity=1.367 Sum_probs=15.1
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
||||+-+-|=-||||.
T Consensus 131 CFNC~g~~hsLrdC~r 146 (485)
T KOG2673|consen 131 CFNCGGTPHSLRDCPR 146 (485)
T ss_pred ccccCCCCCccccCCC
Confidence 9999999999999994
No 322
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=40.93 E-value=2.4e+02 Score=28.21 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCCCcCEEE---ecCCCCChhHHHHHhhhcccCCCCCeEEE
Q 011149 152 DIPNVDLII---HYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (492)
Q Consensus 152 di~~v~~VI---~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (492)
++...++|| +..++.+..+|.|..|=.-+. ..|...+
T Consensus 122 ~IAp~dVvvpaG~T~~~P~~~s~fq~LGIpTkI-~kGkIeI 161 (323)
T PTZ00240 122 AIAPCDVIVPAGSTGMEPTQTSFFQALNIATKI-AKGMVEI 161 (323)
T ss_pred CCCCceEEECCCCCCCCCcchHHHHHcCCCeEe-cCcEEEE
Confidence 455566666 556666788999988865553 2344333
No 323
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=39.64 E-value=21 Score=28.73 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=39.5
Q ss_pred EEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHH------------HHHHHHhhhcCCCeEEEEecccccccC
Q 011149 91 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQH------------QRERTLNGFRQGKFTVLVATDVAARGL 151 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~------------~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (492)
.||.+.....+..+++.|.. .+.+....|.+... .+.+.+.+.-...-.|+||||.-..|-
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe 74 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGE 74 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHH
Confidence 47889999999999999873 45566666654211 224444444344567999999766653
No 324
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=38.06 E-value=1.2e+02 Score=33.91 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=42.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHH--cccceeeecCCCCHHHHHHHHhhhc-CCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFR-QGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~r~~~~~~F~-~g~~~iLVaT~ 145 (492)
.++|-||.||-.-...-+.+.-+ -.+.+..+||+ +++|....+.+. .+..+|+|+|-
T Consensus 216 ~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 216 IPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 36899999997665555544443 25889999998 688888877775 45889999885
No 325
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=37.84 E-value=72 Score=27.71 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=33.4
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCC
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (492)
.|...+..+....++||+|.+-..+..++..|.. ++ .+..|.|++
T Consensus 38 ~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 38 QLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred HHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 3444455555567899999998888888888874 44 788999996
No 326
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=37.74 E-value=17 Score=35.12 Aligned_cols=20 Identities=5% Similarity=-0.049 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGG 435 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (492)
.+|+.||.+|||+-+||...
T Consensus 161 ~~cyrcGkeghwskEcP~~~ 180 (346)
T KOG0109|consen 161 SGCYRCGKEGHWSKECPVDR 180 (346)
T ss_pred HHheeccccccccccCCccC
Confidence 56999999999999999763
No 327
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=37.67 E-value=69 Score=24.94 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCC
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (492)
..+..+.++.++||+|.+-..+...+..|.. ++ .+..+.|++
T Consensus 48 ~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 48 DWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred HHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 3344455667999999998888888888875 44 466777775
No 328
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=37.07 E-value=45 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=28.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (492)
+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 457899999998888888888875 555 788888863
No 329
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=36.84 E-value=3.3e+02 Score=29.29 Aligned_cols=136 Identities=10% Similarity=0.093 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEee-cccccccc--cceEEEEEEcCcccHHHHHHHHH
Q 011149 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV-GNQDEKLA--EGIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 6 F~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~--~~i~~~~~~~~~~~k~~~l~~ll 82 (492)
+.+-++.|....+...++-.+.+.+-..+....++...+-..|-+. +..-..+. .++....+.+...+-+.+|...
T Consensus 15 l~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~i~~s~~Dil~al~~a- 93 (526)
T TIGR02329 15 LFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLSLPVIVIKPTGFDVMQALARA- 93 (526)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHhCCCCEEEecCChhhHHHHHHHH-
Confidence 4556666776666546677788887655554434444433333222 11111111 2233344444444444444332
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
+.+....-+|-|-+....+..++..|.-.+....+|. .++-...++..+...++++|+..
T Consensus 94 ~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~---~~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 94 RRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVT---EEDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred HhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecC---HHHHHHHHHHHHHCCCCEEECCh
Confidence 2222222355666777888889998876677777775 45556666777666788888654
No 330
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=35.58 E-value=1.5e+02 Score=25.24 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=40.4
Q ss_pred hhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHH--HHHHHHHHHHhccCCccchhhhH
Q 011149 168 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL--ESSAEQVVATLNGVHPESVEFFT 245 (492)
Q Consensus 168 ~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~l~~~~~~~~~~f~ 245 (492)
.-+++||+|+.. .+.++.+....+..++++.-...-.+. ...+..+...++....+...+..
T Consensus 9 LpSlIHRig~~~----------------~k~~ka~A~q~~CeLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~li 72 (128)
T PF12614_consen 9 LPSLIHRIGREA----------------VKQAKALARQHGCELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQFLI 72 (128)
T ss_pred cHHHHHHhhHHH----------------HHHHHHHHHHhCchHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHHHH
Confidence 349999999842 245566666666666554433322222 12334445555444444444444
Q ss_pred HHHHHHHhhhC--HHHHHHHHHHH
Q 011149 246 PTAQRLIEEKG--TDALAAALAQL 267 (492)
Q Consensus 246 ~~a~~l~~~~~--~~~l~~al~~~ 267 (492)
...+.-+..+. .+-+...|..+
T Consensus 73 ~kie~~L~~~~dkle~l~~~L~~L 96 (128)
T PF12614_consen 73 KKIEAALLQHSDKLEPLEDKLARL 96 (128)
T ss_pred HHHHHHhcccccccchHHHHHHHH
Confidence 43433332222 13344444444
No 331
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=34.68 E-value=3.9e+02 Score=25.65 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=36.6
Q ss_pred EEEcCcccHHHHHHHHHHHHccCCeEEEEe-CChHHHHHHHHHHHc-ccceeeec
Q 011149 66 AISTTATSKRTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTS-IIASEALH 118 (492)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~-~t~~~~~~l~~~l~~-~~~~~~lh 118 (492)
.+.+...+|-.+|..+|.......+.|||+ .+.+....+.+.+.. .+...-+|
T Consensus 155 Ilft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 155 ILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred eEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 445666788999999998886556666666 567777788877775 44444333
No 332
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=33.99 E-value=2.1e+02 Score=22.50 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=26.6
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (492)
.++.++||||.+-..+...+..|.. ++. +..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 3567899999886666666777764 564 777888763
No 333
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=33.70 E-value=79 Score=36.44 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=48.4
Q ss_pred CeEEEEeCChHHHHHHHHHH-HcccceeeecCCCCHHHHHHHHhhhcCC--CeEEEEecc
Q 011149 89 GKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l-~~~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~ 145 (492)
+-+||..|-....+.....| ...+++..||+.++..+|..+++.+.++ .++||--|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 35677777777777766666 4589999999999999999999999999 899998887
No 334
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=33.53 E-value=1.1e+02 Score=35.23 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=54.4
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCC--CCC--------eEEEecChhhHHHHHHHHHHh
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEG--------TAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g--~~g--------~~i~l~~~~e~~~~~~l~~~~ 206 (492)
..+.|++-+++.+|.|-|+|-.++.+.-..+...-.|.+||.-|.- ..| .-.+++...+..+.+.|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999988888888888999999999842 111 223345666667777776655
No 335
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=32.99 E-value=99 Score=25.80 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=12.4
Q ss_pred eEeecCHHHHHHHHhhc
Q 011149 336 AVFDLPEEIAKELLNKQ 352 (492)
Q Consensus 336 s~fdv~~~~a~~~i~~~ 352 (492)
-|+-+|++..+++-+..
T Consensus 67 kylri~d~iid~vkee~ 83 (134)
T KOG3293|consen 67 KYLRIPDEIIDKVKEEC 83 (134)
T ss_pred EEEeccHHHHHHHHHHH
Confidence 57788888887776643
No 336
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=32.89 E-value=13 Score=38.12 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=49.8
Q ss_pred ccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee-cCHH
Q 011149 278 SLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD-LPEE 343 (492)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd-v~~~ 343 (492)
.|.+++...+++++-++. +++++++..+--+|+-..|..+.+ |||+..++..+.+.++|. +|++
T Consensus 550 nle~Fkk~dvkflictdv--aargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ek 618 (725)
T KOG0349|consen 550 NLESFKKFDVKFLICTDV--AARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEK 618 (725)
T ss_pred HHHhhhhcCeEEEEEehh--hhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchh
Confidence 467788999999999998 899999999888888877765543 888888877665556664 4444
No 337
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=32.65 E-value=84 Score=27.52 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=41.7
Q ss_pred HHHHHHHH-HHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEe---cccccccC
Q 011149 76 TILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA---TDVAARGL 151 (492)
Q Consensus 76 ~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa---T~~~~~Gi 151 (492)
.+|.++++ .+....++||..||+..++++++.|+. .+ ..+|..+-.. ..+.+..+.++-- +.-+..+.
T Consensus 20 ~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~-~~-~~~~t~~~~~------~~~g~~~i~vMc~at~~~~~~~p~ 91 (148)
T PF07652_consen 20 RVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG-LP-VRFHTNARMR------THFGSSIIDVMCHATYGHFLLNPC 91 (148)
T ss_dssp THHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT-SS-EEEESTTSS----------SSSSEEEEEHHHHHHHHHTSS
T ss_pred cccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc-CC-cccCceeeec------cccCCCcccccccHHHHHHhcCcc
Confidence 34555554 446678999999999999999999974 22 2233222111 2233333444321 12234466
Q ss_pred CCCCcCEEEe
Q 011149 152 DIPNVDLIIH 161 (492)
Q Consensus 152 di~~v~~VI~ 161 (492)
..++.++||.
T Consensus 92 ~~~~yd~II~ 101 (148)
T PF07652_consen 92 RLKNYDVIIM 101 (148)
T ss_dssp CTTS-SEEEE
T ss_pred cccCccEEEE
Confidence 6677777774
No 338
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=32.44 E-value=1.3e+02 Score=21.87 Aligned_cols=60 Identities=23% Similarity=0.151 Sum_probs=36.1
Q ss_pred EEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccC
Q 011149 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (492)
.+|+|....++..+.........+..+.|.........+...++. ...|++++|.-..|.
T Consensus 2 ~viivEg~~d~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~v~i~~D~D~~g~ 61 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGYGGAVVALGGHALNKTRELLKRLLGE-AKEVIIATDADREGE 61 (83)
T ss_pred EEEEEecHHHHHHHHHHcCCCEEEEEEccEEcHHHHHHHHHHhcC-CCEEEEEcCCChhHH
Confidence 478888888888877776544556666565443233333333332 567888888655554
No 339
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=32.01 E-value=43 Score=36.95 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcC---CCeEEEEecccccc
Q 011149 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAAR 149 (492)
Q Consensus 74 k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~---g~~~iLVaT~~~~~ 149 (492)
|+.+|...+..+ ....+++||..-....+.+...+........+.|..+-.+|+.++.+|.. ..+..|.+|.+.+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 445555555544 34679999999999888888888753377788999999999999999983 45778889876543
No 340
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.93 E-value=2.2e+02 Score=27.37 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHccCCeEE-EEeCChHHHHHHHHHHHcc---cceee-ecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 74 KRTILSDLITVYAKGGKTI-VFTQTKRDADEVSLALTSI---IASEA-LHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 74 k~~~l~~ll~~~~~~~~~i-VF~~t~~~~~~l~~~l~~~---~~~~~-lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
-.++...+++....+..-| ++=.+...+++.+..|+.. +.++. +||-.+..+.+.++++...-+.+||+
T Consensus 93 G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 93 GTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred hHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 3556666676665553444 4445566677777778764 34444 45888888888888887765555443
No 341
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=31.37 E-value=1.4e+02 Score=34.58 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=39.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
+.|+|-.+|+++.|.++++.+.+ ++.|..|.||+.- .+.++. ..+|||+|+
T Consensus 164 ~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql-~~tei~------~tqiiVTTP 219 (1230)
T KOG0952|consen 164 DFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL-TKTEIA------DTQIIVTTP 219 (1230)
T ss_pred CceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchh-hHHHHH------hcCEEEecc
Confidence 45888889999999999998875 3678999999744 334443 468999997
No 342
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=31.12 E-value=61 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=29.1
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cc--ceeeecCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDI 121 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~--~~~~lhg~~ 121 (492)
.++.+++|||.+-..+...+..|.. ++ .+..+.|++
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~ 108 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGL 108 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchH
Confidence 3467899999987788888888875 66 588899998
No 343
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=31.09 E-value=1.1e+02 Score=24.79 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=26.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-ccc--eeeecCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-IIA--SEALHGDIS 122 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~--~~~lhg~~~ 122 (492)
+.+++|||.+-..+...+..|.. ++. +..|.|+|.
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 46899999887666667777774 663 778889874
No 344
>PHA02558 uvsW UvsW helicase; Provisional
Probab=31.08 E-value=2.1e+02 Score=30.55 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHHHH-ccC-CeEEEEeCChHHHHHHHHHHHccc-----ceeeecCCCCHHHHHHHHhhhcCCCeEEEEec
Q 011149 72 TSKRTILSDLITVY-AKG-GKTIVFTQTKRDADEVSLALTSII-----ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~-~~~iVF~~t~~~~~~l~~~l~~~~-----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (492)
.-|..+...+...+ ... .++||+++|++.+++..+.+.+.. .+..+.++.... ....|+|+|
T Consensus 140 sGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~~~I~VaT 208 (501)
T PHA02558 140 AGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TDAPIVVST 208 (501)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CCCCEEEee
Confidence 45655444343322 223 389999999999999999988631 222344442211 245799999
Q ss_pred c-cccc-c-CCCCCcCEEE
Q 011149 145 D-VAAR-G-LDIPNVDLII 160 (492)
Q Consensus 145 ~-~~~~-G-idi~~v~~VI 160 (492)
. .+.+ . ..+.++++||
T Consensus 209 ~qsl~~~~~~~~~~~~~iI 227 (501)
T PHA02558 209 WQSAVKQPKEWFDQFGMVI 227 (501)
T ss_pred HHHHhhchhhhccccCEEE
Confidence 4 2221 1 1356777777
No 345
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=31.00 E-value=1.2e+02 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=27.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (492)
++.+++|||++-..+...+..|.+ ++ .+..|.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 367899999997777777777775 45 4778888864
No 346
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=30.93 E-value=1.4e+02 Score=33.54 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCC-----CCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGD-----ISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~-----~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
..++..+ .+..++|.++++..|.+.++.+.. ++.+..++++ +.+++|..+. ..+|+++|+-
T Consensus 103 pa~l~aL-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y------~~dIvygTp~ 173 (762)
T TIGR03714 103 PLYLNAL-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY------NSDIVYTTNS 173 (762)
T ss_pred HHHHHhh-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC------CCCEEEECch
Confidence 3334433 456899999999999998888753 3566665553 5555555442 3689999983
No 347
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=30.72 E-value=72 Score=33.11 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=6.6
Q ss_pred EEEEecccccccCC
Q 011149 139 TVLVATDVAARGLD 152 (492)
Q Consensus 139 ~iLVaT~~~~~Gid 152 (492)
...|.+|++ |=||
T Consensus 122 ~yfVlNDiF-Rfvd 134 (419)
T KOG0116|consen 122 GYFVLNDIF-RFVD 134 (419)
T ss_pred ceEEEechh-hhcc
Confidence 455666654 3344
No 348
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=29.44 E-value=88 Score=24.54 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=27.2
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (492)
.++.++||||.+-..+...+..|.. ++ .+..+.|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCH
Confidence 3567899999997777777777764 45 577788876
No 349
>PRK05320 rhodanese superfamily protein; Provisional
Probab=27.63 E-value=1.9e+02 Score=27.83 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=30.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCCCH
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 123 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 123 (492)
++.++++||.+=..++..+..|.+ ++. +..|.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 567899999998889998888875 664 7889999844
No 350
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=27.08 E-value=1.2e+02 Score=24.30 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=30.7
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCC
Q 011149 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (492)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (492)
+...+..+..+.+++|+|.+-..+...+..|.. ++. +..+.|++
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~ 93 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGF 93 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCH
Confidence 333444455567899999887777777877774 554 67788886
No 351
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=26.77 E-value=31 Score=35.92 Aligned_cols=16 Identities=50% Similarity=1.398 Sum_probs=15.3
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
|-+||.+||..-|||+
T Consensus 264 c~~cg~~~H~q~~cp~ 279 (554)
T KOG0119|consen 264 CRNCGSTGHKQYDCPG 279 (554)
T ss_pred ccccCCCccccccCCc
Confidence 9999999999999995
No 352
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=26.31 E-value=1.3e+02 Score=24.46 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCC
Q 011149 78 LSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (492)
Q Consensus 78 l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (492)
+..++..+ .++.++||||++-..+..++..|.. ++ .+..+.|++
T Consensus 66 ~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 66 LRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 34444443 2467899999997777778877864 55 466777775
No 353
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=26.28 E-value=3.3e+02 Score=26.03 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHHcc--ccee-eecCCCCHHHHHHHHhhhcCCCeE
Q 011149 74 KRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI--IASE-ALHGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 74 k~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~~--~~~~-~lhg~~~~~~r~~~~~~F~~g~~~ 139 (492)
-.+++..+++.... +.++-++=.+...++++++.|++. +.++ .+||-..+++.+.+++..+....+
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~d 159 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAK 159 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 34556666655433 345555556667788888888753 3333 467777777777777776654433
No 354
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=26.25 E-value=2.6e+02 Score=32.15 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=49.3
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
.+|..++..+ .+..+-|.++|.-.|..=++.+.. ++.|.++.+++++++|..++. ++|+++|...
T Consensus 112 A~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 112 GTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 3344444444 567899999998888777776653 468889999999999998887 6899998753
No 355
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=26.23 E-value=2.2e+02 Score=32.69 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=45.9
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
+|..++..+ .+..+.|.+++...|...++.+.. ++.|.++.+++++.+|.... ..+|+++|+.
T Consensus 113 ~lp~~l~al-~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~~ 180 (908)
T PRK13107 113 TLPAYLNAL-TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTNN 180 (908)
T ss_pred HHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCCC
Confidence 344444444 456799999999999998888764 47788889999886655443 4578898873
No 356
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=25.75 E-value=88 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=27.9
Q ss_pred HccCCeEEEEeCCh--HHHHHHHHHHHc-ccceeeecCCCC
Q 011149 85 YAKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (492)
Q Consensus 85 ~~~~~~~iVF~~t~--~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (492)
+.++.++||||++- ..+..++..|.. ++.+..|.|++.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 34567899999875 366777777764 667888888863
No 357
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=25.62 E-value=2.6e+02 Score=25.65 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=11.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS 110 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~ 110 (492)
...|++.........+.+.|.+
T Consensus 122 ~~~il~~~g~~~~~~l~~~L~~ 143 (239)
T cd06578 122 GKRILRPRGGRAREDLAEALRE 143 (239)
T ss_pred CCEEEEEcCcchhHHHHHHHHH
Confidence 3444444444445566667764
No 358
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=25.25 E-value=1.1e+02 Score=23.95 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=24.9
Q ss_pred CCeEEEEeCC--hHHHHHHHHHHHc-cc-ceeeecCCCC
Q 011149 88 GGKTIVFTQT--KRDADEVSLALTS-II-ASEALHGDIS 122 (492)
Q Consensus 88 ~~~~iVF~~t--~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (492)
+.+++|||.+ +..+...+..|.. ++ .+..+.|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999998 4546677777764 44 5677888763
No 359
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=25.13 E-value=3e+02 Score=20.68 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=30.1
Q ss_pred eEEEEeCCh-HHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc
Q 011149 90 KTIVFTQTK-RDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (492)
Q Consensus 90 ~~iVF~~t~-~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (492)
+++|.|++- ..+..++..|++.++-..+-.-.+..+ +......+++++|+|--+.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~~~v~~~~~~~----~~~~~~~~~DlIitT~~l~ 57 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEIEIIDVISLRE----LEEVDLDDYDLIISTVPLE 57 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCceEEEEEeHHH----HhhCcccCCCEEEEccccC
Confidence 578888775 455567777776443222212222222 1222234678999997655
No 360
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=25.12 E-value=2.4e+02 Score=27.59 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=48.4
Q ss_pred eEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 90 KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
--+|+|.....+..|-..+.-.-+...+|-.-.++....+++....|+. |.+.+|+---+|.-|.-.+
T Consensus 26 ~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~~L 93 (276)
T TIGR00096 26 VDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGHLL 93 (276)
T ss_pred CCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccHHH
Confidence 4489999988888887777533345566665556666777777777764 8888898777777776543
No 361
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=25.10 E-value=6.5e+02 Score=24.82 Aligned_cols=123 Identities=15% Similarity=0.254 Sum_probs=55.8
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccc----ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEec
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSII----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~ 162 (492)
+..+-|+|.|.+.....+.+.+.+.+ ....+|-.++.++-+++.++ .|++.+++|-
T Consensus 134 ~~~~~IlF~PD~nLG~~v~~~~~k~ii~w~G~C~VH~~f~~~~i~~~r~~--------------------~P~a~vlvHP 193 (296)
T PF02445_consen 134 PQDKKILFLPDKNLGRYVARQTGKNIILWPGYCPVHERFTPEDIEKAREK--------------------HPDAKVLVHP 193 (296)
T ss_dssp S-SE-EEEES-HHHHHHHHHHH--EEEESSSS--TGGG--HHHHHHHHCC--------------------STTSEEEE-T
T ss_pred cCCCeEEEcCcHHHHHHHHHhhCCeEEEECCCcccccccCHHHHHHHHHH--------------------CcCCEEEECC
Confidence 44566999999999999998886432 35677888877765555444 3566666665
Q ss_pred CCCCC----------hhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC---HHHHHHHHHHHH
Q 011149 163 ELPND----------PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV---VEDVLESSAEQV 229 (492)
Q Consensus 163 ~~P~~----------~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~---~~~~~~~~~~~~ 229 (492)
..|.. ....+..+.. . ..+ .+++ .+|...+.+|.+....+ +.+.++. =..+....++.+
T Consensus 194 EC~~ev~~~AD~vGSTs~ii~~v~~---~-~~~-~~iI--gTE~gl~~~L~~~~p~k-~f~~~~~~~~C~~Mk~~tl~~l 265 (296)
T PF02445_consen 194 ECPPEVVELADFVGSTSGIIKYVKE---S-PAK-EFII--GTEIGLVHRLKKENPDK-EFIPLSPCAICPNMKKITLEKL 265 (296)
T ss_dssp TS-HHHHCT-SEE--HHHHHHHCCG-----S---EEEE--ES-CHHHHHHHHH-TTS-EEEETTTTSSSTT-----HHHH
T ss_pred CCCHHHHHHhhhcCCHHHHHHHHHh---C-CCC-eEEE--EecchHHHHHHHHCCCc-EEEeCCCCCcCcCccccCHHHH
Confidence 55432 2333333211 1 122 3333 34556777777765432 2222221 123444455555
Q ss_pred HHHhccCC
Q 011149 230 VATLNGVH 237 (492)
Q Consensus 230 ~~~l~~~~ 237 (492)
...|....
T Consensus 266 ~~~L~~~~ 273 (296)
T PF02445_consen 266 LDALENLE 273 (296)
T ss_dssp HHHHHHT-
T ss_pred HHHHhcCC
Confidence 55555443
No 362
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=25.04 E-value=92 Score=24.51 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=27.6
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (492)
.++.+++|||++-..+...+..|.+ ++ .+..++|++
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 3467899999998777788888874 44 577788886
No 363
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=24.82 E-value=1.9e+02 Score=22.37 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=34.1
Q ss_pred EEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc
Q 011149 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (492)
.+|.+..+.++..+.+..-+ ..+...+|.....+..+.+.+. .-.|+|+||--.
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~-~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~D~ 56 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE-AEIIETNGSIINKETIELIKKA---YRGVIILTDPDR 56 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC-ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECCCH
Confidence 46778888888887776542 3455566654444555555554 456888988433
No 364
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=24.81 E-value=1.2e+02 Score=22.88 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=27.7
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-c-cceeeecCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-I-IASEALHGDI 121 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~-~~~~~lhg~~ 121 (492)
.+..++||||.....+..++..|.. + ..+..+-|++
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~ 85 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGM 85 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCCh
Confidence 4567899999998888888888885 2 4566777765
No 365
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=24.71 E-value=1.2e+02 Score=25.33 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=27.4
Q ss_pred ccCCeEEEEeC-ChHHHHHHHHHHHc-ccceeeecCCCC
Q 011149 86 AKGGKTIVFTQ-TKRDADEVSLALTS-IIASEALHGDIS 122 (492)
Q Consensus 86 ~~~~~~iVF~~-t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (492)
.++.++||||. +-..+..++..|+. ++.+..|.|++.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 45678999996 44556666777765 778888999974
No 366
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=24.14 E-value=6.1e+02 Score=23.91 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=55.5
Q ss_pred CCeEEEEeCC------------hHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC---CCeEEEEecccccccC
Q 011149 88 GGKTIVFTQT------------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAARGL 151 (492)
Q Consensus 88 ~~~~iVF~~t------------~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~---g~~~iLVaT~~~~~Gi 151 (492)
...+||+.+. ..+++.|+..|+. ++.| .++-+++..+-.++++.|.+ .....+|+. +++-|.
T Consensus 9 ~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG~ 86 (243)
T cd00032 9 RGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHGE 86 (243)
T ss_pred CCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCCC
Confidence 3556777663 4778999999986 6766 46788999999999999974 222333222 455564
Q ss_pred CCCCcCEEEecC-CCCChhHHHHHhh
Q 011149 152 DIPNVDLIIHYE-LPNDPETFVHRSG 176 (492)
Q Consensus 152 di~~v~~VI~~~-~P~~~~~y~qr~G 176 (492)
. ++|+-.| -+.+.+.+++...
T Consensus 87 ~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 87 E----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred C----CEEEEecCcEEEHHHHHHhhc
Confidence 4 6666666 5556667777664
No 367
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=23.94 E-value=36 Score=36.50 Aligned_cols=18 Identities=44% Similarity=1.053 Sum_probs=14.6
Q ss_pred CCCcccCCCCCccc--CCCC
Q 011149 474 GGACFNCGKSGHRA--SECP 491 (492)
Q Consensus 474 ~~~c~~cg~~gh~a--~~cp 491 (492)
-..|-+|||.|||- .-||
T Consensus 937 tr~C~nCGQvGHmkTNK~CP 956 (968)
T COG5179 937 TRTCGNCGQVGHMKTNKACP 956 (968)
T ss_pred ceecccccccccccccccCc
Confidence 35699999999995 4677
No 368
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=23.20 E-value=2.2e+02 Score=27.50 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=39.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 89 GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.-+|+|++.....+.+...++.+..+.+-.-+++.++.+++.+.-+...+.++++.+
T Consensus 70 DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 70 DVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 457778877777777777777777766555568888777777665655566666654
No 369
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=23.18 E-value=4.3e+02 Score=23.19 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc--cHHHHHHHH
Q 011149 5 GFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--SKRTILSDL 81 (492)
Q Consensus 5 GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~--~k~~~l~~l 81 (492)
+|.+++.++++.+ ..+.+++++||+....++.+++.+--+...+.... . ................ .|...+..+
T Consensus 89 ~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~--~-~~~~~~~~~~~~~~~~~~~K~~~l~~~ 165 (192)
T PF12710_consen 89 GFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNE--L-FDNGGGIFTGRITGSNCGGKAEALKEL 165 (192)
T ss_dssp TCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEE--E-ECTTCCEEEEEEEEEEESHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEe--e-eecccceeeeeECCCCCCcHHHHHHHH
Confidence 3442333444443 34889999999977777777764433332222111 1 0001111112222222 488888877
Q ss_pred H--HH-HccCCeEEEEeCChHHHHH
Q 011149 82 I--TV-YAKGGKTIVFTQTKRDADE 103 (492)
Q Consensus 82 l--~~-~~~~~~~iVF~~t~~~~~~ 103 (492)
. .. -....+++.+-.+..+...
T Consensus 166 ~~~~~~~~~~~~~~~iGDs~~D~~~ 190 (192)
T PF12710_consen 166 YIRDEEDIDPDRVIAIGDSINDLPM 190 (192)
T ss_dssp HHHHHHTHTCCEEEEEESSGGGHHH
T ss_pred HHHhhcCCCCCeEEEEECCHHHHHH
Confidence 1 11 1235678888777776654
No 370
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=23.06 E-value=1e+02 Score=24.10 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (492)
+.++|+||.+-..+...+..|.. ++.+..+.|++
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~ 90 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGL 90 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcH
Confidence 46899999987666677777764 66677788876
No 371
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=22.54 E-value=6.3e+02 Score=23.50 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhh
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F 133 (492)
.+.+..+.....+-..+.||++. ..+++.+.+.. .+.+.-|||+.+++.-+++-+..
T Consensus 40 ~~~a~~i~~~v~~~~~VgVf~n~--~~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 40 PEQAREIASAVPKVKVVGVFVNE--SIEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred HHHHHHHHHhCCCCCEEEEECCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 44555555554323578899875 33444555554 57889999999998877776665
No 372
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=22.49 E-value=1.5e+02 Score=24.26 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=26.2
Q ss_pred cCCeEEEEeCC-hHHHHHHHHHHHc-ccc-eeeecCCCC
Q 011149 87 KGGKTIVFTQT-KRDADEVSLALTS-IIA-SEALHGDIS 122 (492)
Q Consensus 87 ~~~~~iVF~~t-~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (492)
++.++||||.+ -..+..++..|.. ++. +..+-|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 46789999988 4677777777764 544 777888763
No 373
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=22.27 E-value=5.3e+02 Score=24.37 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCeEEEEeCC-----------hHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC----CeEEEEecccccccC
Q 011149 88 GGKTIVFTQT-----------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARGL 151 (492)
Q Consensus 88 ~~~~iVF~~t-----------~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g----~~~iLVaT~~~~~Gi 151 (492)
.+.+||+.+. ..+++.|++.|+. +|.| .++-+++..+-.+++++|.+. ..+++|+. +++-|.
T Consensus 8 ~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG~ 85 (241)
T smart00115 8 RGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHGE 85 (241)
T ss_pred CcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCCC
Confidence 4567888775 4589999999987 6766 467889999999999999763 23344443 556663
Q ss_pred CCCCcCEEEecCC-CCChhHHHHHh
Q 011149 152 DIPNVDLIIHYEL-PNDPETFVHRS 175 (492)
Q Consensus 152 di~~v~~VI~~~~-P~~~~~y~qr~ 175 (492)
.++|+-.|- +.+.+..+...
T Consensus 86 ----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 86 ----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred ----CCeEEEecCCEEEHHHHHHhc
Confidence 356665554 44555555554
No 374
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=22.26 E-value=4.9e+02 Score=25.51 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccc-ceeeecCCCCHHHHHHHHhhhcCCC
Q 011149 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQGK 137 (492)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~-~~~~lhg~~~~~~r~~~~~~F~~g~ 137 (492)
-++.+.+.++.. .-.-.|||++-...++.+.+.+...+ .+.++.-+.|..+-.++.+..+...
T Consensus 53 Vf~tV~EA~~~~-~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g 116 (293)
T COG0074 53 VFNTVEEAVKET-GANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG 116 (293)
T ss_pred HHHHHHHHHHhh-CCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 344555555555 34678999999999999999998744 5778888999998888888877655
No 375
>PRK06739 pyruvate kinase; Validated
Probab=22.18 E-value=3.9e+02 Score=27.16 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEecccccccCC
Q 011149 123 QHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (492)
Q Consensus 123 ~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid 152 (492)
+..+.++++.-+.-...|++||++++.-+.
T Consensus 250 p~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~ 279 (352)
T PRK06739 250 PLLQKMMIQECNRTNTYVITATQMLQSMVD 279 (352)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcchHHhhcc
Confidence 456677777777777899999999876443
No 376
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=21.98 E-value=1e+02 Score=24.46 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=26.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (492)
+..++||||.+-..+..++..|.. ++. +..+.|++
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 356899999998778788888874 553 66677775
No 377
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=21.68 E-value=1.7e+02 Score=24.09 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=27.5
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (492)
.+..++||||.+-..+...+..|.. ++. +..+.+++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 4567899999997778888888875 554 666777764
No 378
>PLN02160 thiosulfate sulfurtransferase
Probab=21.60 E-value=1.6e+02 Score=25.13 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=28.7
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (492)
.+..++|+||.+=..+...+..|.. ++ .+..+.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 4567899999998888888888875 55 4667788763
No 379
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=21.53 E-value=8.2e+02 Score=24.40 Aligned_cols=122 Identities=15% Similarity=0.254 Sum_probs=70.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-c----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-I----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
...+-|||+|.+..+..+++.... . -..+.+|-..+.++-.+.-+. .|++.+++|
T Consensus 157 ~~~~~Iif~PD~~Lg~yva~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~--------------------~Pda~vlvH 216 (324)
T COG0379 157 LDGDKILFLPDKNLGRYVAKQTGAKKIILWPGHCIVHEEFTAEDIEELKEK--------------------YPDAEVLVH 216 (324)
T ss_pred cCCCcEEEcCcHHHHHHHHHHcCCCcEEEECCccchhhhcCHHHHHHHHHH--------------------CCCCEEEEC
Confidence 346789999999999999888732 1 234566777776665544444 344444443
Q ss_pred ----------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHHHHHHHH
Q 011149 162 ----------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDVLESSAE 227 (492)
Q Consensus 162 ----------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~~~~~~~ 227 (492)
.|..-|....++.+.. .++.-+++. +|...+.+|++....+ +.++++.. ..+....++
T Consensus 217 PEC~~~Vv~~AD~vGST~~ii~~~~~-----~~~~~~iv~--TE~g~~~~l~~~~P~k-~~~~~~~~~~~C~~Mk~itL~ 288 (324)
T COG0379 217 PECPPEVVELADFVGSTSQIIKAVKA-----SPAQKFIVG--TERGIVHRLQKEAPDK-EFIPLPTAGAVCPTMKMITLE 288 (324)
T ss_pred CCCCHHHHHhccccccHHHHHHHHhc-----CCCceEEEE--ecHHHHHHHHHHCCCC-eEEccCCCCCcChhhhhhCHH
Confidence 4444455555555541 233444443 4566777887776544 33444432 234445556
Q ss_pred HHHHHhccC
Q 011149 228 QVVATLNGV 236 (492)
Q Consensus 228 ~~~~~l~~~ 236 (492)
.+...|...
T Consensus 289 ~i~~~L~~~ 297 (324)
T COG0379 289 KILEALEEG 297 (324)
T ss_pred HHHHHHHhC
Confidence 666666554
No 380
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=21.44 E-value=3.5e+02 Score=30.32 Aligned_cols=52 Identities=13% Similarity=0.303 Sum_probs=37.1
Q ss_pred cCCeEEEEe-CChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 87 KGGKTIVFT-QTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 87 ~~~~~iVF~-~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
.+-++++.+ .++..|+.+++.| .+.-+|+++.|+++.+++++++.....|+.
T Consensus 552 ~Gi~~~mLTGDn~~~A~~iA~~l----GId~v~AellPedK~~~V~~l~~~g~~Vam 604 (713)
T COG2217 552 LGIKVVMLTGDNRRTAEAIAKEL----GIDEVRAELLPEDKAEIVRELQAEGRKVAM 604 (713)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHc----ChHhheccCCcHHHHHHHHHHHhcCCEEEE
Confidence 344555555 4566677777666 457789999999999999999954444444
No 381
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=21.28 E-value=2.2e+02 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=31.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeee--CChHHHHHHHHHc
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSAT--MPSWVKKLSRKYL 42 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT--~p~~i~~~~~~~~ 42 (492)
||+..-+++|+.++..+.....+++|+.. ...+++++++...
T Consensus 1 ~l~~~~~~qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a 44 (94)
T cd02974 1 MLDANLKQQLKAYLERLENPVELVASLDDSEKSAELLELLEEIA 44 (94)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHH
Confidence 78888999999999999988888888653 2344555555443
No 382
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=21.19 E-value=8.7 Score=21.29 Aligned_cols=13 Identities=38% Similarity=1.083 Sum_probs=7.8
Q ss_pred Ccc-cCCCCCcccC
Q 011149 476 ACF-NCGKSGHRAS 488 (492)
Q Consensus 476 ~c~-~cg~~gh~a~ 488 (492)
+|| +|-+.||=-.
T Consensus 3 ~cyrscwk~g~dee 16 (22)
T PF08095_consen 3 GCYRSCWKAGHDEE 16 (22)
T ss_dssp -TTTHHHHHHS-TT
T ss_pred chHHHHHHccCcHH
Confidence 487 6878887443
No 383
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=21.16 E-value=1.3e+02 Score=34.66 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=44.7
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
++..++......++-||.+|+-....-..+.-.-.-.+..+...=++++|.....+.+.++++||++|-
T Consensus 433 LitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 433 LITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred HHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeH
Confidence 344444444456788888887665544333221112344444444689999999999999999999995
No 384
>KOG3070 consensus Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing [Translation, ribosomal structure and biogenesis]
Probab=21.14 E-value=57 Score=30.99 Aligned_cols=18 Identities=39% Similarity=1.121 Sum_probs=16.0
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||.|+++||.+.+|++
T Consensus 200 ~~~~~~~~~g~~~~~~~e 217 (235)
T KOG3070|consen 200 SLCYTCGEPGHVADGCEE 217 (235)
T ss_pred ccccccCccccccccccc
Confidence 359999999999999974
No 385
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=20.92 E-value=2.5e+02 Score=28.88 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCeEEEE---eCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 88 GGKTIVF---TQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 88 ~~~~iVF---~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
+..+||+ +.|-.+....++.|++ .+.+.+.|+-++ ...+++.+.|.++.++-+|+||..
T Consensus 264 gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 264 GKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 3456666 4566667777777774 366888999888 777778888888888889999975
No 386
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=20.61 E-value=2.7e+02 Score=22.55 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=24.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (492)
+.++||||.+-..+...+..|.. ++....+.|++
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 45799999997777888888874 66544556764
No 387
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=20.49 E-value=1.1e+02 Score=22.77 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=27.6
Q ss_pred eEEEEeCCh-HHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc
Q 011149 90 KTIVFTQTK-RDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (492)
Q Consensus 90 ~~iVF~~t~-~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (492)
++++.|++- .....+...|++. +....-+.++..- ....+++++|+|.-+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~dliitt~~~~ 57 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV--------IDLADADLIISTVPLA 57 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh--------hhcCCccEEEECCccc
Confidence 467888776 5566666666542 2222222232211 2234678888887654
No 388
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=20.46 E-value=44 Score=33.75 Aligned_cols=15 Identities=53% Similarity=1.258 Sum_probs=13.3
Q ss_pred cccCCCCCccc--CCCC
Q 011149 477 CFNCGKSGHRA--SECP 491 (492)
Q Consensus 477 c~~cg~~gh~a--~~cp 491 (492)
|.+|++-||+. +|||
T Consensus 127 C~kChkwGH~n~DreCp 143 (453)
T KOG3794|consen 127 CLKCHKWGHINTDRECP 143 (453)
T ss_pred EEeecccccccCCccCc
Confidence 99999999986 6788
No 389
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=20.20 E-value=5.7e+02 Score=22.05 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=51.2
Q ss_pred HHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccC
Q 011149 76 TILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (492)
Q Consensus 76 ~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (492)
+.+..+++.+. .++++.|+-.+....+-++..|.+ +..+...|..... -++ ..+ +.+|+|+.--...-|
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~-l~~----~v~--~ADIVvsAtg~~~~i 85 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ-LQS----KVH--DADVVVVGSPKPEKV 85 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC-HHH----HHh--hCCEEEEecCCCCcc
Confidence 34445555552 467899999999999999999985 6888888875432 111 222 345555433222334
Q ss_pred CCC---CcCEEEecCCCC
Q 011149 152 DIP---NVDLIIHYELPN 166 (492)
Q Consensus 152 di~---~v~~VI~~~~P~ 166 (492)
+-. .=.+||++++..
T Consensus 86 ~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHcCCCCEEEEcCCCc
Confidence 432 234778777654
No 390
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=20.05 E-value=3.7e+02 Score=25.49 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~ 110 (492)
.+.|...+..+.+..+-|.+..+....+.+.+.|..
T Consensus 109 ~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~ 144 (248)
T COG1587 109 SEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEE 144 (248)
T ss_pred hHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHh
Confidence 333444444443323334444444444666666663
Done!