Query 011149
Match_columns 492
No_of_seqs 540 out of 3348
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i32_A Heat resistant RNA depe 100.0 3.5E-43 1.2E-47 345.6 29.0 289 61-372 2-291 (300)
2 3eaq_A Heat resistant RNA depe 100.0 6.8E-34 2.3E-38 266.7 26.2 206 62-268 6-212 (212)
3 2db3_A ATP-dependent RNA helic 100.0 8.1E-33 2.8E-37 287.3 22.1 202 1-206 215-420 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 2.5E-31 8.5E-36 286.0 22.6 216 1-216 187-420 (579)
5 2j0s_A ATP-dependent RNA helic 100.0 3.2E-31 1.1E-35 272.8 21.0 214 1-217 191-406 (410)
6 3i5x_A ATP-dependent RNA helic 100.0 9E-31 3.1E-35 280.8 21.9 214 1-214 238-469 (563)
7 2i4i_A ATP-dependent RNA helic 100.0 2.5E-30 8.7E-35 266.4 19.0 206 1-208 187-397 (417)
8 1s2m_A Putative ATP-dependent 100.0 1.2E-29 4.1E-34 260.0 23.6 211 2-216 176-387 (400)
9 3fht_A ATP-dependent RNA helic 100.0 2.2E-29 7.4E-34 258.7 24.2 215 4-221 184-407 (412)
10 3eiq_A Eukaryotic initiation f 100.0 2.6E-30 8.9E-35 265.9 17.2 212 2-216 196-409 (414)
11 1xti_A Probable ATP-dependent 100.0 5.2E-29 1.8E-33 254.2 24.3 211 4-216 168-380 (391)
12 2hjv_A ATP-dependent RNA helic 100.0 6.6E-29 2.3E-33 222.9 20.4 156 58-214 6-162 (163)
13 3pey_A ATP-dependent RNA helic 100.0 1.5E-28 5E-33 250.7 25.7 216 4-222 161-386 (395)
14 1hv8_A Putative ATP-dependent 100.0 7.7E-29 2.6E-33 250.3 22.1 205 2-214 160-365 (367)
15 2rb4_A ATP-dependent RNA helic 100.0 7.4E-29 2.5E-33 225.3 17.4 161 58-219 4-172 (175)
16 1t5i_A C_terminal domain of A 100.0 1.7E-28 5.8E-33 222.3 18.1 156 59-215 3-160 (172)
17 2p6n_A ATP-dependent RNA helic 100.0 7.8E-29 2.7E-33 228.2 14.8 166 38-207 8-175 (191)
18 3fmp_B ATP-dependent RNA helic 100.0 2.5E-30 8.5E-35 271.9 4.8 213 4-219 251-472 (479)
19 1fuk_A Eukaryotic initiation f 100.0 3.3E-28 1.1E-32 218.8 15.5 156 60-216 2-159 (165)
20 1fuu_A Yeast initiation factor 100.0 1.4E-29 4.7E-34 258.6 4.9 212 2-216 175-388 (394)
21 2jgn_A DBX, DDX3, ATP-dependen 100.0 4.9E-28 1.7E-32 221.8 14.2 153 57-209 15-168 (185)
22 2v1x_A ATP-dependent DNA helic 99.9 3.5E-27 1.2E-31 252.9 19.8 198 2-203 178-383 (591)
23 2z0m_A 337AA long hypothetical 99.9 8.7E-27 3E-31 232.6 17.4 194 2-207 142-335 (337)
24 3fho_A ATP-dependent RNA helic 99.9 1.7E-27 5.9E-32 252.0 10.4 214 4-220 275-497 (508)
25 1oyw_A RECQ helicase, ATP-depe 99.9 4.2E-25 1.4E-29 234.1 25.2 194 2-204 152-353 (523)
26 2yjt_D ATP-dependent RNA helic 99.9 3.5E-28 1.2E-32 219.8 0.0 154 61-215 3-158 (170)
27 3oiy_A Reverse gyrase helicase 99.9 5.6E-26 1.9E-30 234.2 15.4 193 1-212 161-383 (414)
28 1tf5_A Preprotein translocase 99.9 9.7E-26 3.3E-30 243.5 7.1 126 68-195 411-546 (844)
29 4ddu_A Reverse gyrase; topoiso 99.9 8.6E-24 2.9E-28 240.5 15.6 204 1-223 218-523 (1104)
30 2xau_A PRE-mRNA-splicing facto 99.9 9.9E-24 3.4E-28 232.5 14.3 177 10-196 231-445 (773)
31 3l9o_A ATP-dependent RNA helic 99.9 1.4E-22 4.6E-27 230.8 22.1 199 1-203 302-607 (1108)
32 2whx_A Serine protease/ntpase/ 99.9 6.1E-24 2.1E-28 228.6 8.9 179 2-206 289-493 (618)
33 3o8b_A HCV NS3 protease/helica 99.9 3.8E-23 1.3E-27 221.2 11.9 187 1-219 329-543 (666)
34 2xgj_A ATP-dependent RNA helic 99.9 1.7E-21 5.9E-26 219.9 23.8 198 1-202 204-508 (1010)
35 2p6r_A Afuhel308 helicase; pro 99.9 6.1E-22 2.1E-26 217.5 19.2 186 3-195 152-389 (702)
36 2fsf_A Preprotein translocase 99.9 3.1E-23 1.1E-27 223.5 8.3 127 67-195 419-584 (853)
37 1yks_A Genome polyprotein [con 99.9 6.1E-24 2.1E-28 220.5 1.9 177 4-206 113-314 (440)
38 1gku_B Reverse gyrase, TOP-RG; 99.9 2.7E-23 9.2E-28 236.4 7.2 206 6-224 190-487 (1054)
39 2zj8_A DNA helicase, putative 99.9 7.3E-22 2.5E-26 217.5 17.3 199 2-213 151-404 (720)
40 2d7d_A Uvrabc system protein B 99.9 2.2E-21 7.5E-26 210.6 20.3 174 19-202 385-564 (661)
41 4a2p_A RIG-I, retinoic acid in 99.9 1.3E-21 4.6E-26 208.5 18.0 123 73-197 372-511 (556)
42 2ykg_A Probable ATP-dependent 99.9 1.3E-22 4.4E-27 222.7 10.2 129 72-202 379-524 (696)
43 1nkt_A Preprotein translocase 99.9 1.3E-21 4.6E-26 211.1 17.4 127 68-196 439-619 (922)
44 2va8_A SSO2462, SKI2-type heli 99.9 2.2E-21 7.5E-26 213.6 19.3 202 3-213 159-426 (715)
45 2wv9_A Flavivirin protease NS2 99.9 9.8E-23 3.4E-27 220.7 6.1 175 6-206 348-548 (673)
46 1c4o_A DNA nucleotide excision 99.9 7.3E-21 2.5E-25 206.6 20.6 176 19-204 379-560 (664)
47 3jux_A Protein translocase sub 99.9 1.3E-20 4.5E-25 199.3 19.6 180 22-208 411-608 (822)
48 3tbk_A RIG-I helicase domain; 99.8 2.3E-21 8E-26 206.4 12.6 128 73-202 371-515 (555)
49 1wp9_A ATP-dependent RNA helic 99.8 8.9E-21 3E-25 197.6 16.5 122 73-195 343-476 (494)
50 2z83_A Helicase/nucleoside tri 99.8 1.2E-22 4E-27 212.1 1.2 102 88-194 190-313 (459)
51 4a4z_A Antiviral helicase SKI2 99.8 2.2E-20 7.5E-25 210.8 19.5 126 75-202 324-502 (997)
52 2jlq_A Serine protease subunit 99.8 5E-21 1.7E-25 199.4 12.4 164 4-193 124-310 (451)
53 2eyq_A TRCF, transcription-rep 99.8 1.4E-20 4.7E-25 215.5 16.9 179 9-194 740-922 (1151)
54 4a2q_A RIG-I, retinoic acid in 99.8 6.7E-20 2.3E-24 204.0 20.6 122 73-196 613-751 (797)
55 3dmq_A RNA polymerase-associat 99.8 4.6E-20 1.6E-24 208.3 18.1 166 70-236 486-657 (968)
56 3rc3_A ATP-dependent RNA helic 99.8 2.7E-20 9.3E-25 201.1 15.0 193 1-214 251-464 (677)
57 4gl2_A Interferon-induced heli 99.8 1.7E-20 5.8E-25 206.0 12.4 103 88-193 400-517 (699)
58 4a2w_A RIG-I, retinoic acid in 99.8 4.3E-19 1.5E-23 200.0 20.7 121 74-196 614-751 (936)
59 1gm5_A RECG; helicase, replica 99.8 2.8E-20 9.5E-25 204.0 9.9 174 17-196 513-699 (780)
60 2v6i_A RNA helicase; membrane, 99.8 3.5E-20 1.2E-24 191.8 9.5 161 5-191 108-288 (431)
61 4f92_B U5 small nuclear ribonu 99.8 8.2E-19 2.8E-23 206.6 20.7 188 12-202 1075-1316(1724)
62 2fwr_A DNA repair protein RAD2 99.8 7E-20 2.4E-24 191.8 4.2 114 71-189 333-447 (472)
63 4f92_B U5 small nuclear ribonu 99.8 1.5E-18 5.2E-23 204.3 13.7 184 15-202 239-481 (1724)
64 1z5z_A Helicase of the SNF2/RA 99.8 1.2E-18 4.2E-23 168.7 10.5 124 70-193 93-223 (271)
65 2oca_A DAR protein, ATP-depend 99.8 2.3E-18 8E-23 182.0 12.8 184 8-192 240-453 (510)
66 3h1t_A Type I site-specific re 99.7 1.8E-17 6.2E-22 178.4 15.5 97 86-183 437-545 (590)
67 1z63_A Helicase of the SNF2/RA 99.6 1.3E-15 4.4E-20 160.5 12.3 118 72-189 324-446 (500)
68 1z3i_X Similar to RAD54-like; 99.6 1.1E-14 3.7E-19 158.0 16.0 134 72-205 398-541 (644)
69 3mwy_W Chromo domain-containin 99.5 4.5E-14 1.6E-18 156.9 15.5 137 72-208 555-700 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 6.1E-13 2.1E-17 149.8 17.7 119 89-209 538-723 (1038)
71 2a51_A Nucleocapsid protein; s 99.0 3.8E-10 1.3E-14 74.5 4.2 38 417-492 2-39 (39)
72 1cl4_A Protein (GAG polyprotei 98.9 3.1E-10 1.1E-14 82.7 2.4 47 416-492 2-48 (60)
73 2bl6_A Nucleocapsid protein P1 98.9 7.1E-10 2.4E-14 72.3 3.6 36 417-492 2-37 (37)
74 2ec7_A GAG polyprotein (PR55GA 98.8 1.7E-09 5.9E-14 75.1 3.8 39 416-492 7-45 (49)
75 2cqf_A RNA-binding protein LIN 98.8 6.1E-09 2.1E-13 76.4 5.4 40 416-492 8-47 (63)
76 2e29_A ATP-dependent RNA helic 98.8 1.7E-08 5.7E-13 79.5 7.4 89 267-362 2-91 (92)
77 1a1t_A Nucleocapsid protein; s 98.7 3.3E-09 1.1E-13 75.8 2.6 39 416-492 13-51 (55)
78 2ihx_A Nucleocapsid (NC) prote 98.7 6.8E-09 2.3E-13 75.7 4.1 44 416-492 5-48 (61)
79 1dsq_A Nucleic acid binding pr 98.7 3.5E-09 1.2E-13 62.9 2.0 18 475-492 3-20 (26)
80 2li8_A Protein LIN-28 homolog 98.7 1.6E-08 5.6E-13 76.4 5.8 40 416-492 25-64 (74)
81 3nyb_B Protein AIR2; polya RNA 98.7 6.5E-09 2.2E-13 80.3 2.9 59 416-492 6-64 (83)
82 1a6b_B Momulv, zinc finger pro 98.7 8.6E-09 3E-13 67.4 2.9 19 474-492 10-28 (40)
83 2lli_A Protein AIR2; RNA surve 98.6 7.6E-08 2.6E-12 81.2 8.2 75 416-492 43-123 (124)
84 3ts2_A Protein LIN-28 homolog 98.6 2.6E-08 8.9E-13 86.3 4.0 40 416-492 98-137 (148)
85 2ipc_A Preprotein translocase 98.5 4.1E-06 1.4E-10 91.0 19.6 167 22-195 380-699 (997)
86 1u6p_A GAG polyprotein; MLV, A 98.5 8.1E-08 2.8E-12 67.8 3.4 19 474-492 23-41 (56)
87 2vl7_A XPD; helicase, unknown 98.5 9E-07 3.1E-11 93.7 12.6 75 87-166 383-463 (540)
88 1nc8_A Nucleocapsid protein; H 98.3 1.7E-07 5.9E-12 57.1 1.2 18 475-492 7-24 (29)
89 2g0c_A ATP-dependent RNA helic 98.2 1.2E-06 4.2E-11 66.9 4.7 61 287-354 1-61 (76)
90 2lli_A Protein AIR2; RNA surve 98.2 2.4E-06 8.3E-11 71.9 6.2 18 475-492 65-82 (124)
91 2li8_A Protein LIN-28 homolog 98.1 1.7E-06 5.7E-11 65.3 3.6 18 475-492 25-42 (74)
92 2ysa_A Retinoblastoma-binding 98.1 1.2E-06 4E-11 61.6 2.4 17 475-491 8-24 (55)
93 4a15_A XPD helicase, ATP-depen 97.9 0.00012 4.3E-09 78.4 14.6 104 87-193 447-583 (620)
94 2a51_A Nucleocapsid protein; s 97.7 9E-06 3.1E-10 53.3 1.7 17 476-492 2-18 (39)
95 2bl6_A Nucleocapsid protein P1 97.7 1.1E-05 3.8E-10 52.2 1.8 17 476-492 2-18 (37)
96 2cqf_A RNA-binding protein LIN 97.6 3E-05 1E-09 56.5 3.0 18 475-492 8-25 (63)
97 2ec7_A GAG polyprotein (PR55GA 97.6 2.6E-05 9E-10 53.8 2.5 18 475-492 7-24 (49)
98 1wrb_A DJVLGB; RNA helicase, D 97.6 3.9E-05 1.3E-09 72.5 4.5 62 1-64 186-251 (253)
99 2ihx_A Nucleocapsid (NC) prote 97.6 2.3E-05 8E-10 56.8 1.9 18 475-492 5-22 (61)
100 2db3_A ATP-dependent RNA helic 97.5 1.8E-06 6.2E-11 88.8 -6.3 248 88-350 129-418 (434)
101 1a1t_A Nucleocapsid protein; s 97.4 4.4E-05 1.5E-09 54.1 1.5 18 475-492 13-30 (55)
102 3fmp_B ATP-dependent RNA helic 97.3 0.00018 6.3E-09 74.6 6.1 242 90-341 164-446 (479)
103 3hgt_A HDA1 complex subunit 3; 97.3 0.0029 1E-07 61.4 12.9 120 71-195 107-238 (328)
104 3ts2_A Protein LIN-28 homolog 97.2 0.00012 4.1E-09 63.2 2.8 19 474-492 97-115 (148)
105 1fuu_A Yeast initiation factor 97.2 0.0011 3.9E-08 66.2 10.5 240 88-339 89-364 (394)
106 3i31_A Heat resistant RNA depe 97.1 0.0011 3.8E-08 49.7 6.1 77 275-371 2-78 (88)
107 3crv_A XPD/RAD3 related DNA he 97.1 0.0047 1.6E-07 65.2 13.3 75 87-166 392-473 (551)
108 2v1x_A ATP-dependent DNA helic 96.7 0.00013 4.5E-09 77.8 -1.9 59 87-145 83-144 (591)
109 3sqw_A ATP-dependent RNA helic 96.7 3.1E-05 1E-09 82.6 -7.3 243 89-342 96-399 (579)
110 1oyw_A RECQ helicase, ATP-depe 96.6 0.00024 8.1E-09 74.7 -0.7 74 87-160 64-144 (523)
111 3i5x_A ATP-dependent RNA helic 96.5 5.2E-05 1.8E-09 80.4 -7.4 244 89-343 147-451 (563)
112 3tbk_A RIG-I helicase domain; 96.4 0.028 9.5E-07 58.7 13.3 70 88-161 52-133 (555)
113 3eiq_A Eukaryotic initiation f 96.3 0.0002 6.8E-09 72.4 -3.8 241 87-345 107-391 (414)
114 1xti_A Probable ATP-dependent 96.2 0.00043 1.5E-08 69.3 -1.8 71 88-161 76-158 (391)
115 4a2p_A RIG-I, retinoic acid in 96.2 0.059 2E-06 56.3 14.5 70 88-161 55-136 (556)
116 1gm5_A RECG; helicase, replica 96.1 0.013 4.5E-07 64.2 9.4 89 73-161 401-496 (780)
117 2i4i_A ATP-dependent RNA helic 96.1 0.00011 3.9E-09 74.3 -6.7 69 89-161 102-181 (417)
118 3oiy_A Reverse gyrase helicase 95.9 0.016 5.6E-07 58.4 8.4 80 82-161 58-145 (414)
119 1dsq_A Nucleic acid binding pr 95.9 0.0042 1.4E-07 36.4 2.2 20 416-435 3-22 (26)
120 2j0s_A ATP-dependent RNA helic 95.9 0.0011 3.8E-08 66.9 -0.6 70 87-160 104-184 (410)
121 1s2m_A Putative ATP-dependent 95.7 0.002 7E-08 64.6 0.6 70 88-161 89-169 (400)
122 3fe2_A Probable ATP-dependent 95.5 0.087 3E-06 48.8 10.8 120 88-214 102-236 (242)
123 1hv8_A Putative ATP-dependent 95.1 0.00097 3.3E-08 65.9 -4.1 69 88-161 74-153 (367)
124 1wrb_A DJVLGB; RNA helicase, D 94.9 0.14 4.9E-06 47.6 10.5 123 89-215 101-239 (253)
125 4ddu_A Reverse gyrase; topoiso 94.9 0.038 1.3E-06 63.0 7.5 88 73-161 105-202 (1104)
126 1a6b_B Momulv, zinc finger pro 94.8 0.014 4.7E-07 37.9 2.2 20 416-435 11-30 (40)
127 1t6n_A Probable ATP-dependent 94.2 0.071 2.4E-06 48.4 6.5 70 89-161 83-164 (220)
128 3iuy_A Probable ATP-dependent 94.2 0.16 5.4E-06 46.4 8.8 71 87-161 93-173 (228)
129 3ber_A Probable ATP-dependent 94.2 0.19 6.4E-06 46.8 9.4 118 88-212 111-244 (249)
130 2gxq_A Heat resistant RNA depe 94.1 0.12 4E-06 46.3 7.6 117 88-211 72-201 (207)
131 2eyq_A TRCF, transcription-rep 93.8 0.14 4.8E-06 58.7 9.3 80 82-161 646-731 (1151)
132 3fht_A ATP-dependent RNA helic 93.8 0.0016 5.5E-08 65.5 -6.3 83 72-161 75-174 (412)
133 2oxc_A Probable ATP-dependent 93.2 0.1 3.5E-06 47.9 5.6 85 72-161 72-172 (230)
134 3nyb_B Protein AIR2; polya RNA 93.2 0.031 1.1E-06 42.8 1.6 14 477-490 27-40 (83)
135 1u6p_A GAG polyprotein; MLV, A 93.1 0.094 3.2E-06 36.7 3.8 20 416-435 24-43 (56)
136 3fho_A ATP-dependent RNA helic 92.9 0.014 4.7E-07 60.9 -0.9 65 89-161 190-265 (508)
137 2pl3_A Probable ATP-dependent 92.9 0.43 1.5E-05 43.7 9.4 70 87-161 96-177 (236)
138 3pey_A ATP-dependent RNA helic 92.6 0.0031 1.1E-07 62.8 -6.2 67 87-161 74-151 (395)
139 1vec_A ATP-dependent RNA helic 92.5 0.31 1.1E-05 43.4 7.7 70 88-161 71-152 (206)
140 3bor_A Human initiation factor 92.3 0.49 1.7E-05 43.4 8.9 71 88-161 98-179 (237)
141 1qde_A EIF4A, translation init 91.8 0.87 3E-05 41.1 10.0 85 72-161 62-161 (224)
142 1nc8_A Nucleocapsid protein; H 91.7 0.068 2.3E-06 32.0 1.4 19 416-434 7-25 (29)
143 1gku_B Reverse gyrase, TOP-RG; 91.4 0.37 1.3E-05 54.7 8.4 75 85-161 96-181 (1054)
144 3ly5_A ATP-dependent RNA helic 91.2 0.87 3E-05 42.6 9.5 71 87-161 125-207 (262)
145 2ysa_A Retinoblastoma-binding 89.9 0.16 5.6E-06 35.3 2.2 18 416-433 8-25 (55)
146 2yjt_D ATP-dependent RNA helic 89.3 0.062 2.1E-06 46.9 0.0 79 259-340 54-136 (170)
147 3dkp_A Probable ATP-dependent 89.3 0.59 2E-05 43.0 6.5 87 72-161 77-181 (245)
148 3fmo_B ATP-dependent RNA helic 88.9 0.49 1.7E-05 45.4 5.8 132 72-213 142-295 (300)
149 2hqh_E Restin; beta/BETA struc 88.6 0.11 3.7E-06 29.7 0.4 16 477-492 6-21 (26)
150 1q0u_A Bstdead; DEAD protein, 87.0 0.58 2E-05 42.2 4.7 70 88-161 72-156 (219)
151 4a2q_A RIG-I, retinoic acid in 86.6 1.2 4.1E-05 48.9 7.7 70 88-161 296-377 (797)
152 1wp9_A ATP-dependent RNA helic 86.5 2.2 7.5E-05 42.8 9.2 70 87-161 51-131 (494)
153 1cl4_A Protein (GAG polyprotei 85.8 0.63 2.2E-05 32.9 3.3 20 416-435 31-50 (60)
154 2z0m_A 337AA long hypothetical 84.8 2.8 9.5E-05 40.0 8.6 70 87-161 55-135 (337)
155 2pk2_A Cyclin-T1, protein TAT; 80.5 0.33 1.1E-05 47.9 0.0 10 256-265 192-201 (358)
156 4a2w_A RIG-I, retinoic acid in 79.3 1.7 5.8E-05 48.7 5.2 69 88-160 296-376 (936)
157 3b6e_A Interferon-induced heli 79.0 1.6 5.5E-05 38.8 4.1 54 88-145 82-140 (216)
158 2ykg_A Probable ATP-dependent 77.7 2.6 9E-05 45.1 6.1 69 89-161 62-142 (696)
159 1tf5_A Preprotein translocase 76.6 4.4 0.00015 44.2 7.3 68 87-160 123-208 (844)
160 2fsf_A Preprotein translocase 76.3 4.3 0.00015 44.3 7.1 68 87-160 114-199 (853)
161 3pgw_S U1-70K; protein-RNA com 71.9 64 0.0022 32.3 14.3 60 285-353 101-165 (437)
162 1nkt_A Preprotein translocase 71.6 7.2 0.00025 42.8 7.4 73 81-160 146-236 (922)
163 4gl2_A Interferon-induced heli 71.3 1.7 5.7E-05 46.7 2.4 68 89-160 57-141 (699)
164 3l9o_A ATP-dependent RNA helic 70.5 4.7 0.00016 45.9 5.9 69 81-160 220-295 (1108)
165 2oca_A DAR protein, ATP-depend 70.3 4.5 0.00015 41.5 5.4 66 89-161 158-231 (510)
166 2ipc_A Preprotein translocase 69.9 7.8 0.00027 42.6 7.2 53 87-145 119-176 (997)
167 2pzo_E CAP-Gly domain-containi 65.9 1.6 5.3E-05 27.9 0.4 16 477-492 23-38 (42)
168 2p6r_A Afuhel308 helicase; pro 64.1 6.7 0.00023 42.2 5.3 75 80-161 60-144 (702)
169 3dmn_A Putative DNA helicase; 64.1 51 0.0018 28.1 10.3 62 88-164 61-123 (174)
170 2zj8_A DNA helicase, putative 64.0 6.3 0.00021 42.5 5.1 68 87-161 67-144 (720)
171 4a4z_A Antiviral helicase SKI2 60.4 12 0.0004 42.1 6.6 65 85-160 79-152 (997)
172 1h2v_Z 20 kDa nuclear CAP bind 59.4 36 0.0012 28.3 8.2 60 285-353 38-102 (156)
173 2xgj_A ATP-dependent RNA helic 59.0 13 0.00043 41.9 6.5 69 81-160 122-197 (1010)
174 3gk5_A Uncharacterized rhodane 58.2 7.8 0.00027 30.5 3.5 41 82-122 49-90 (108)
175 3o8b_A HCV NS3 protease/helica 58.1 17 0.00059 38.7 7.0 66 87-163 256-326 (666)
176 1c4o_A DNA nucleotide excision 58.0 59 0.002 34.5 11.4 83 67-151 34-144 (664)
177 3q2s_C Cleavage and polyadenyl 55.5 22 0.00076 32.1 6.6 62 285-353 67-133 (229)
178 3g5j_A Putative ATP/GTP bindin 55.0 15 0.00052 29.6 4.9 41 82-122 82-125 (134)
179 3hjh_A Transcription-repair-co 53.0 86 0.0029 31.8 11.1 111 64-176 17-146 (483)
180 2jtq_A Phage shock protein E; 52.0 30 0.001 25.4 5.8 42 79-121 30-75 (85)
181 2fz4_A DNA repair protein RAD2 51.9 23 0.0008 32.0 6.1 59 72-145 119-179 (237)
182 1gmx_A GLPE protein; transfera 51.8 15 0.00052 28.6 4.3 44 79-122 49-94 (108)
183 2va8_A SSO2462, SKI2-type heli 50.7 12 0.0004 40.2 4.4 82 72-160 57-150 (715)
184 3hix_A ALR3790 protein; rhodan 50.2 16 0.00054 28.4 4.1 39 83-121 47-87 (106)
185 2fwr_A DNA repair protein RAD2 49.2 23 0.00077 35.6 6.1 73 73-160 120-197 (472)
186 1rif_A DAR protein, DNA helica 48.3 20 0.00069 33.3 5.2 65 89-160 158-230 (282)
187 2d7d_A Uvrabc system protein B 46.3 1.6E+02 0.0055 31.1 12.4 108 67-176 38-177 (661)
188 3e2u_E CAP-Gly domain-containi 44.4 5.8 0.0002 25.5 0.4 16 477-492 23-38 (42)
189 3flh_A Uncharacterized protein 43.0 12 0.00042 30.1 2.4 41 81-121 64-107 (124)
190 1tq1_A AT5G66040, senescence-a 42.9 12 0.00041 30.4 2.3 38 85-122 79-118 (129)
191 3iwh_A Rhodanese-like domain p 40.4 12 0.0004 29.3 1.8 37 85-121 53-90 (103)
192 2q5c_A NTRC family transcripti 38.8 1.2E+02 0.0043 26.4 8.6 123 89-222 5-132 (196)
193 2pju_A Propionate catabolism o 38.3 1.7E+02 0.0057 26.3 9.5 132 7-145 25-162 (225)
194 3foj_A Uncharacterized protein 38.2 23 0.00079 27.1 3.2 37 85-121 53-90 (100)
195 3eme_A Rhodanese-like domain p 37.5 21 0.0007 27.5 2.8 37 85-121 53-90 (103)
196 1wv9_A Rhodanese homolog TT165 35.9 33 0.0011 25.7 3.8 36 86-122 52-88 (94)
197 3eaq_A Heat resistant RNA depe 35.3 0.15 5.2E-06 46.3 -11.7 62 282-345 77-142 (212)
198 2pju_A Propionate catabolism o 34.7 2.5E+02 0.0085 25.1 10.5 125 89-222 13-144 (225)
199 2l82_A Designed protein OR32; 34.7 1.6E+02 0.0056 22.9 11.9 55 91-145 5-60 (162)
200 3i32_A Heat resistant RNA depe 34.5 0.21 7.1E-06 48.1 -11.4 59 282-342 74-136 (300)
201 2rb4_A ATP-dependent RNA helic 34.1 0.22 7.6E-06 43.5 -10.5 57 284-342 82-148 (175)
202 1vp8_A Hypothetical protein AF 33.3 1.2E+02 0.0042 26.6 7.2 73 72-148 26-109 (201)
203 2k0z_A Uncharacterized protein 32.1 61 0.0021 25.1 4.9 37 85-121 53-90 (110)
204 1vee_A Proline-rich protein fa 31.9 59 0.002 26.3 4.9 37 86-122 72-110 (134)
205 1qys_A TOP7; alpha-beta, novel 31.6 1.5E+02 0.0051 21.6 6.3 51 60-110 15-69 (106)
206 2fsx_A RV0390, COG0607: rhodan 31.4 53 0.0018 27.0 4.6 37 86-122 78-116 (148)
207 1t57_A Conserved protein MTH16 29.5 77 0.0026 27.9 5.3 79 65-147 26-115 (206)
208 3bbn_B Ribosomal protein S2; s 28.2 87 0.003 28.4 5.7 31 79-109 54-84 (231)
209 2hhg_A Hypothetical protein RP 27.6 44 0.0015 27.1 3.4 36 86-121 84-121 (139)
210 2q5c_A NTRC family transcripti 25.3 84 0.0029 27.5 5.0 130 6-145 16-150 (196)
211 2fcj_A Small toprim domain pro 24.5 1.6E+02 0.0056 23.5 6.1 54 90-145 5-58 (119)
212 3ilm_A ALR3790 protein; rhodan 24.4 50 0.0017 27.1 3.1 37 85-121 53-91 (141)
213 3nhv_A BH2092 protein; alpha-b 24.3 44 0.0015 27.6 2.8 37 86-122 70-109 (144)
214 3iz6_A 40S ribosomal protein S 23.6 1E+02 0.0034 29.1 5.2 36 74-110 61-96 (305)
215 2yv2_A Succinyl-COA synthetase 23.4 83 0.0028 29.6 4.9 57 88-145 72-129 (297)
216 3d1p_A Putative thiosulfate su 22.5 59 0.002 26.3 3.3 35 87-121 90-126 (139)
217 3sxu_A DNA polymerase III subu 22.3 1.7E+02 0.0058 24.4 6.1 76 74-164 24-104 (150)
218 3mwy_W Chromo domain-containin 22.3 1.4E+02 0.0049 32.2 7.2 59 86-145 284-353 (800)
219 1qxn_A SUD, sulfide dehydrogen 22.2 53 0.0018 26.8 2.9 37 85-121 79-117 (137)
220 2yv1_A Succinyl-COA ligase [AD 21.8 1.5E+02 0.0052 27.7 6.4 58 87-145 70-128 (294)
221 3mb5_A SAM-dependent methyltra 21.7 3.8E+02 0.013 23.5 9.1 41 70-110 169-209 (255)
No 1
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=3.5e-43 Score=345.59 Aligned_cols=289 Identities=38% Similarity=0.588 Sum_probs=250.5
Q ss_pred ceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeE
Q 011149 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 61 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (492)
.++++++.++...|.++|.++++... ..++||||+|++.++.+++.|.. .+.+..+||+|++.+|+.+++.|++|+++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46788999999999999999998774 78999999999999999999985 78999999999999999999999999999
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~ 219 (492)
|||||+++++|||+|++++||+|++|++.+.|+||+||+||.|++|.|++|+++.+...++.+++.++.+++.+.+|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCcccc
Q 011149 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 299 (492)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 299 (492)
++.+.....++..+..+..+.+..|.+.+++++++...+.+++||+++.+.+. ..+++++...+|++++++.++.
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~~--- 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPRL--- 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTTC---
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCCC---
Confidence 99999999999999888778889999999999999999999999999987765 6788888889999999999872
Q ss_pred CCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCCCCCceeeeccCCCCCCCC
Q 011149 300 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDG 372 (492)
Q Consensus 300 ~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~~~i~~~~~~~lp~~~~~~ 372 (492)
.. |++|+ .|... +. +||+|.+.+++ +|||||++.++ ...++.+++++++|++++.+
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~~----~~~dvp~~~~~------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEGG----FYVDLRPEARP------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETTE----EEECBCSSCCC------CCTTCEEEEC----------
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCCE----EEEEeCHHHcC------cCCCcEEEecccCCCCccCC
Confidence 22 99997 55553 33 89999997765 89999999887 23678999999999999875
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=100.00 E-value=6.8e-34 Score=266.65 Aligned_cols=206 Identities=44% Similarity=0.704 Sum_probs=191.9
Q ss_pred eEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEE
Q 011149 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 62 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (492)
+.+.++.++...|..+|.+++... ...++||||+|++.++.+++.|.. .+.+..+||+|++.+|+++++.|++|+++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 445677788889999999999876 568999999999999999999985 789999999999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011149 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (492)
||||+++++|||+|++++||+|++|++++.|+||+||+||.|++|.+++|+++.+...++.+++.++.+++...+|..++
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011149 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (492)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~ 268 (492)
+.+.....++..+..........|.+.+++++++.+++++++||++++
T Consensus 165 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 165 VLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 999999999999998877777899999999999999999999999873
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.1e-33 Score=287.31 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=178.7
Q ss_pred CCCCChHHHHHHHHHhC--CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~--~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
|+++||.+++..|+..+ +.++|+++||||+|+.+..+++.++.++..+.+.. .......+.+.++.+....|...|
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI--VGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS--TTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc--ccccccccceEEEEeCcHHHHHHH
Confidence 68999999999999985 67899999999999999999999999988776542 233456788888888888898888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ..++||||+|++.|+.+++.|.. .+.+..+||++++.+|++++++|++|+.+|||||+++++|||+|+|+
T Consensus 293 ~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 293 IEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 8888764 34599999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHh
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDV 206 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~ 206 (492)
+||+||+|.+.++|+||+|||||.|++|.+++|+++. +...++.|.+.+
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999954 444555555544
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=2.5e-31 Score=286.02 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=180.6
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeec--ccccccccceEEEEEEcCc
Q 011149 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-------~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (492)
|+++||.++++.|+..++ .++|+++||||+|+.+..++..++.++..+.+.. .........+.+.++....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 578999999999998764 3779999999999999999999999887665432 2223344556666655543
Q ss_pred c--cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 72 T--SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 72 ~--~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
. .+...+..++..+ ....++||||+|++.|+.+++.|.. .+.+..+||+|++.+|.+++++|++++++|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 2333443333332 3467999999999999999999985 57899999999999999999999999999999
Q ss_pred ecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 143 aT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
||+++++|||+|+|++||+|++|.+++.|+||+|||||.|+.|.+++|+.+.|...++.|++.....+.....+
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 420 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988887765433
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=3.2e-31 Score=272.78 Aligned_cols=214 Identities=35% Similarity=0.607 Sum_probs=191.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc-HHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (492)
|++++|...+..|+..++.+.|+++||||+|+.+.++++.++.+|..+.+. ........+.+++..+.... +...|.
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHHHHH
Confidence 578899999999999999999999999999999999998899888776543 23334556777777665544 888888
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.++... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++
T Consensus 269 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 269 DLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 888776 457999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (492)
||+|++|++...|+||+||+||.|++|.+++|+++.+...++.+++.+..+++++++..
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 99999999999999999999999999999999999999999999999999998876553
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=9e-31 Score=280.75 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=178.7
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeec--ccccccccceEEEEEEcCc
Q 011149 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-------~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (492)
|+++||.++++.|+..++ .+.|+++||||+|+.+..++..++.++..+.+.. .........+.+.++....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 578999999999988763 3789999999999999999999998877655432 2223334556666555543
Q ss_pred c-cH-HHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 72 T-SK-RTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 72 ~-~k-~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
. .+ ...+..+...+ ....++||||+|++.|+.+++.|.. .+.+..+||+|++.+|.++++.|++++++|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 22 23333333332 3567999999999999999999985 57899999999999999999999999999999
Q ss_pred ecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 143 aT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
||+++++|||+|+|++||+|++|.+++.|+||+|||||.|+.|.+++|+.+.+...++.|++.....++...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888877654
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=266.36 Aligned_cols=206 Identities=39% Similarity=0.601 Sum_probs=179.4
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH
Q 011149 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~--~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (492)
|++++|...+..|+.. ++. ..|+++||||+|+.+..+++.++.++..+.+. ........+.+.++.+....+..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~ 264 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG--RVGSTSENITQKVVWVEESDKRS 264 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHH
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC--CCCCCccCceEEEEEeccHhHHH
Confidence 3567899999999985 443 68999999999999999999999988776553 22344567888888888889999
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~ 155 (492)
.+.+++.......++||||++++.++.+++.|.+ .+.+..+||+|++++|.+++++|++++.+|||||+++++|||+|+
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~ 344 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCC
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 9988888765678999999999999999999985 789999999999999999999999999999999999999999999
Q ss_pred cCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC
Q 011149 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (492)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 208 (492)
+++||+|++|.+...|+||+||+||.|++|.+++|+++.+...++.+++.+..
T Consensus 345 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 345 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888766643
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=1.2e-29 Score=259.99 Aligned_cols=211 Identities=31% Similarity=0.530 Sum_probs=190.7
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (492)
++.+|...++.|+..++...|+++||||+|..+..+...++.+|..+.+.. ......+.+++..+....|...+..+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS---SCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc---ccccCCceeEEEEechhhHHHHHHHH
Confidence 456788999999999999999999999999999999999998887765432 23456677888888888898888888
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
+... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 253 FSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred Hhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 8765 557999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
+|++|+++..|+||+||+||.|++|.|++|+++.+...++.|++.++.+++.++..
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999999999998876544
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=2.2e-29 Score=258.68 Aligned_cols=215 Identities=31% Similarity=0.480 Sum_probs=183.6
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (492)
.+|...+..++..++.+.|+++||||+++.+..++..++.++..+.+.. .......+.+.++.+.. ..+...+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 261 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCChHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999988776542 33345666776666654 46777777777
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++||+
T Consensus 262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 665 457999999999999999999986 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHHHH
Q 011149 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV 221 (492)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (492)
|++|+ +...|+||+||+||.|+.|.+++++++.+ ...++.+++.+...++.+..+..+++
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 99994 67899999999999999999999998764 78899999999999998876655443
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=265.88 Aligned_cols=212 Identities=33% Similarity=0.578 Sum_probs=172.9
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc-cHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 80 (492)
++.+|...+..++..++++.|+++||||+|+.+..+++.++.++..+.+. ........+.++++..... .+...+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK--KEELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCC--CCCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEec--CCccCCCCceEEEEEeChHHhHHHHHHH
Confidence 46789999999999999999999999999999999999999988776543 2233445566666666544 48888888
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++|
T Consensus 274 ~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 274 LYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 77655 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
|+|++|.+...|+||+||+||.|++|.+++|+++.+...++.+++.+...++.+++.
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 999999999999999999999999999999999999999999999999998887544
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=5.2e-29 Score=254.19 Aligned_cols=211 Identities=24% Similarity=0.462 Sum_probs=188.0
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (492)
++|...+..++..++...|+++||||+|+.+..++..++.+|..+.+.. ........+.+++..+....+...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC-CCCCCCTTCEEEEEECCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC-ccccCcccceEEEEEcCchhHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999988776542 222334567788888888889988888887
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEec
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~ 162 (492)
.. ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||+|
T Consensus 247 ~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 247 VL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred hc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 75 568999999999999999999985 7889999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceecCCC
Q 011149 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~p 216 (492)
++|+++..|+||+||+||.|++|.+++++++. +...++.+++.+..+++.++..
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 99999999999999999999999999999876 5577899999998888776543
No 12
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=6.6e-29 Score=222.92 Aligned_cols=156 Identities=34% Similarity=0.609 Sum_probs=146.6
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC
Q 011149 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (492)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g 136 (492)
...+++++++.++...|...|..++... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|..++++|+++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999999876 557999999999999999999985 78999999999999999999999999
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.+...++.+++.++.++++++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887653
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=1.5e-28 Score=250.70 Aligned_cols=216 Identities=31% Similarity=0.538 Sum_probs=185.1
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (492)
.+|...+..++..++.+.|+++||||+++.+..+++.++.++..+.+.. .......+.+.+..+.. ..+...+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999998887776542 23334556666666543 45666776666
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.+++++|++++.+|||||+++++|||+|++++||+
T Consensus 239 ~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 239 GLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp TTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred Hhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 544 457999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHhhhcccCCCCCeEEEecCh-hhHHHHHHHHHHhC-CCceecCCCCHHHHH
Q 011149 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG-CKFEFVSPPVVEDVL 222 (492)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~l~~~~~-~~~~~~~~p~~~~~~ 222 (492)
|++|+ ++..|+||+||+||.|++|.+++++.+ .+...++.+++.+. ..+..++.+..+++.
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 99999 999999999999999999999999986 45678888988888 777777776655543
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=7.7e-29 Score=250.27 Aligned_cols=205 Identities=36% Similarity=0.599 Sum_probs=184.6
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (492)
++.+|...+..++..++...|+++||||+|..+..+++.++.++..+... ....+.+.++.+....+...+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK------INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec------CCCCceEEEEEeChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999877665432 224566777778888888887777
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
+. ....++||||++++.++.+++.|.. .+.+..+||++++.+|.++++.|++++.+|||||+++++|+|+|++++||
T Consensus 234 l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 234 LK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred Hh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 65 3567999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
++++|+++.+|+||+||++|.|++|.+++++++.+...++.|++.++.+++.+.
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999998887654
No 15
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=7.4e-29 Score=225.28 Aligned_cols=161 Identities=28% Similarity=0.502 Sum_probs=144.7
Q ss_pred cccceEEEEEEcCccc-HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC
Q 011149 58 LAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (492)
Q Consensus 58 ~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~ 135 (492)
+..++.|+++.++... |...|..++... ...++||||++++.++.++..|.. .+.+..+||+|++.+|.++++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4568899999988765 999988888765 457999999999999999999986 7899999999999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCC------CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
++++|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|++|.+++|+++.+...++.+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ceecCCCCHH
Q 011149 210 FEFVSPPVVE 219 (492)
Q Consensus 210 ~~~~~~p~~~ 219 (492)
++.++++..+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9888776544
No 16
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.7e-28 Score=222.25 Aligned_cols=156 Identities=23% Similarity=0.451 Sum_probs=143.3
Q ss_pred ccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCC
Q 011149 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (492)
Q Consensus 59 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~ 137 (492)
..+++|+++.++...|...|..+++.. +..++||||++++.++.+++.|.. .+.+..+||+|++.+|..+++.|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 457889999999999999999999875 557999999999999999999985 789999999999999999999999999
Q ss_pred eEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceecCC
Q 011149 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 138 ~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~ 215 (492)
++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|++|.+++|+++. +...++.+++.+..+++.++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999876 567899999999988887643
No 17
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=228.20 Aligned_cols=166 Identities=27% Similarity=0.405 Sum_probs=131.4
Q ss_pred HHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceee
Q 011149 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEA 116 (492)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~ 116 (492)
..+||++|..|.+.. ......++.++++.++...|...|..++... ..++||||++++.++.+++.|.. .+.+..
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 346899998887642 3345678999999999999999988887653 46899999999999999999985 789999
Q ss_pred ecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-h
Q 011149 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-Q 195 (492)
Q Consensus 117 lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e 195 (492)
+||+|++.+|.+++++|++++++|||||+++++|||+|++++||+||+|++++.|+||+||+||.|++|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HHHHHHHHHHhC
Q 011149 196 RRTVRSLERDVG 207 (492)
Q Consensus 196 ~~~~~~l~~~~~ 207 (492)
...++.|++.+.
T Consensus 164 ~~~~~~l~~~l~ 175 (191)
T 2p6n_A 164 ESVLMDLKALLL 175 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=2.5e-30 Score=271.92 Aligned_cols=213 Identities=31% Similarity=0.476 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (492)
.+|...+..|++.++.++|+++||||+|..+..++..++.++..+.+.. .......+.+.++.+.. ..+...|..++
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 328 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc--cccCcCCceEEEEEeCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988877642 23334556666655543 45666676666
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 329 ~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 329 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 554 457999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHH
Q 011149 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE 219 (492)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~ 219 (492)
||+|. +...|+||+||+||.|+.|.+++|+++.+ ...++.|++.+..+++.+.....+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 472 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHH
Confidence 99995 56899999999999999999999998765 778888888888777766554433
No 19
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=3.3e-28 Score=218.84 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=139.3
Q ss_pred cceEEEEEEcCccc-HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCC
Q 011149 60 EGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (492)
Q Consensus 60 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~ 137 (492)
.+++|+++.++... |.+.|..++... ...++||||++++.++.++..|.. .+.+..+||+|++.+|.++++.|++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35778888887777 999999999876 568999999999999999999985 789999999999999999999999999
Q ss_pred eEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 138 ~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.+...++.+++.+..+++.++.+
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877654
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=1.4e-29 Score=258.59 Aligned_cols=212 Identities=33% Similarity=0.585 Sum_probs=44.8
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc-cHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 80 (492)
++.+|...+..++..+++..|+++||||+|+.+..+...++.+|..+.+.. .......+.+++..+... .+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCchhhHHHHHHH
Confidence 356789999999999999999999999999999999999999888776542 222334455555554443 36677777
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
+++.. ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 253 LYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 77654 457999999999999999999985 7889999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
|+|++|+++..|+||+||+||.|++|.+++++++.+...++.+++.+..+++.++.+
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 388 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 388 (394)
T ss_dssp ---------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcc
Confidence 999999999999999999999999999999999999999999999888887765443
No 21
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=221.78 Aligned_cols=153 Identities=40% Similarity=0.564 Sum_probs=127.3
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC
Q 011149 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (492)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~ 135 (492)
.+..+|.++++.++...|...|.+++....+..++||||++++.++.++..|.. .+.+..+||+|++.+|.+++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 346789999999999999999999998765678999999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
++++|||||+++++|+|+|++++||+||+|+++..|+||+||++|.|++|.+++|+++.+...++.+++.+...
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 168 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988888888776544
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=3.5e-27 Score=252.95 Aligned_cols=198 Identities=20% Similarity=0.329 Sum_probs=158.3
Q ss_pred CCCC--hHHHHHH--HHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHH
Q 011149 2 LAVG--FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI 77 (492)
Q Consensus 2 L~~G--F~~~l~~--Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 77 (492)
+++| |+.++.. ++....++.|+|+||||+++.+...+..++..+..+.+.. .....++.+.... ....+...
T Consensus 178 s~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~---~~~r~nl~~~v~~-~~~~~~~~ 253 (591)
T 2v1x_A 178 SQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA---SFNRPNLYYEVRQ-KPSNTEDF 253 (591)
T ss_dssp STTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC---CCCCTTEEEEEEE-CCSSHHHH
T ss_pred cccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec---CCCCcccEEEEEe-CCCcHHHH
Confidence 4556 7777655 4544455799999999999999888888888665443332 1123344333332 22333444
Q ss_pred HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 78 LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 78 l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
+..+++.+. ...++||||+|++.++.+++.|.. ++.+..+|++|++++|.+++++|++++++|||||+++++|||+
T Consensus 254 ~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~ 333 (591)
T 2v1x_A 254 IEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK 333 (591)
T ss_dssp HHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCC
T ss_pred HHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCc
Confidence 444444442 467999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 154 ~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
|+|++||+|++|.+++.|+||+||+||.|.++.|++|+++.+...++.+.
T Consensus 334 p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 334 PDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred ccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877666553
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=8.7e-27 Score=232.57 Aligned_cols=194 Identities=28% Similarity=0.542 Sum_probs=162.8
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (492)
++.+|...+..++..++...|+++||||+|+.+.+....++.++..+... .....+.+.++.+....+..+ ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~ 214 (337)
T 2z0m_A 142 FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSKV--QA 214 (337)
T ss_dssp HHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHHH--HH
T ss_pred hccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHHH--HH
Confidence 35688999999999999999999999999999999999999887766432 233456666666655444322 22
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
+.. ....++||||++++.++.+++.|. .+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~-~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRE-NKDKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHT-CCCSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHh-CCCCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 322 356799999999999999998886 5788999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
|++|+++..|+||+||+||.|++|.+++++. .+...++.+++.++
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 78888888876654
No 24
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.7e-27 Score=251.99 Aligned_cols=214 Identities=30% Similarity=0.506 Sum_probs=152.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEc-CcccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll 82 (492)
.+|...+..|+..++.+.|+|+||||+++.+..+...++.++..+.+... ......+.+.+... ....+...+..++
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE--ELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC--C----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc--cCCcccceEEEEECCchHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999998877765422 22234444455544 3445677777766
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||++++.|+.++..|.+ .+.+..+||+|++.+|+++++.|++|+.+|||||+++++|||+|++++||+
T Consensus 353 ~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 353 GLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp C----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred Hhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 554 457999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCC------CChhHHHHHhhhcccCCCCCeEEEecCh-hhHHHHHHHHHHhCCCceecCCCCHHH
Q 011149 162 YELP------NDPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVGCKFEFVSPPVVED 220 (492)
Q Consensus 162 ~~~P------~~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (492)
+++| .++..|+||+||+||.|+.|.+++|+.+ .+...++.+++.+...++.++....++
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~ 497 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEE 497 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC---------
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHH
Confidence 9999 7899999999999999999999999985 466778999999988888776554433
No 25
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=4.2e-25 Score=234.14 Aligned_cols=194 Identities=20% Similarity=0.362 Sum_probs=154.2
Q ss_pred CCCC--hHHHHH---HHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccH
Q 011149 2 LAVG--FEEDVE---LILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (492)
Q Consensus 2 L~~G--F~~~l~---~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (492)
++.| |+.++. .++..+| +.|+++||||+++.+...+..++. ++..+ +.. ....++.+.. .....+
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~----~~r~~l~~~v--~~~~~~ 223 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS----FDRPNIRYML--MEKFKP 223 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC----CCCTTEEEEE--EECSSH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC----CCCCceEEEE--EeCCCH
Confidence 3445 655544 3455554 689999999999887664444443 34322 221 1123443332 233456
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
...|..++... +..++||||+|++.++.+++.|.. ++.+..+||+|++++|.+++++|++++++|||||+++++|||+
T Consensus 224 ~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 224 LDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp HHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC
T ss_pred HHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc
Confidence 66666666554 557999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 154 ~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
|+|++||+|++|.+++.|+||+||+||.|.++.+++|+++.+...++.+..
T Consensus 303 p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998877776654
No 26
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.89 E-value=3.5e-28 Score=219.76 Aligned_cols=154 Identities=29% Similarity=0.497 Sum_probs=139.8
Q ss_pred ceEEEEEEcCc-ccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe
Q 011149 61 GIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (492)
Q Consensus 61 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (492)
++.++++.++. ..|..+|..++... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.+++++|+++++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 46677777777 78999888888764 457999999999999999999985 7889999999999999999999999999
Q ss_pred EEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011149 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 139 ~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (492)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++++++.+...++.+++.+..+++...+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777665443
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.93 E-value=5.6e-26 Score=234.19 Aligned_cols=193 Identities=22% Similarity=0.383 Sum_probs=153.6
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeee-CChHHH-HHHHHHcCCCceEEeecccccccccceEEE
Q 011149 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVK-KLSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (492)
Q Consensus 1 mL~-~GF~~~-l~~Il~~~~-----------~~~q~ll~SAT-~p~~i~-~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 65 (492)
||+ +||.++ +..|++.+| .+.|+++|||| +|..+. .+.+.++. +.+. ........+.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i~~~ 234 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 234 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccchhe
Confidence 456 899999 899999887 88999999999 676554 33444433 1111 223345567777
Q ss_pred EEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cccee-eecCCCCHHHHHHHHhhhcCCCeEEEEe
Q 011149 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (492)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (492)
++.+ .+...|..++... +.++||||++++.|+.+++.|.. .+.+. .+||+ +|+ +++|++|+++||||
T Consensus 235 ~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 6655 4555666777664 48999999999999999999986 78887 99995 444 99999999999999
Q ss_pred ----cccccccCCCCC-cCEEEecCCC--CChhHHHHHhhhcccCC----CCCeEEEecChhhHHHHHHHHHHhC--CCc
Q 011149 144 ----TDVAARGLDIPN-VDLIIHYELP--NDPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG--CKF 210 (492)
Q Consensus 144 ----T~~~~~Gidi~~-v~~VI~~~~P--~~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l~~~~~--~~~ 210 (492)
|+++++|||+|+ |++||+|++| .++..|+||+||+||.| ++|.+++|+ .+...++.+++.+. .++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~ 381 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEE 381 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCC
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccc
Confidence 999999999999 9999999999 99999999999999987 589999999 56667778877776 444
Q ss_pred ee
Q 011149 211 EF 212 (492)
Q Consensus 211 ~~ 212 (492)
+.
T Consensus 382 ~~ 383 (414)
T 3oiy_A 382 EI 383 (414)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=9.7e-26 Score=243.50 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=111.5
Q ss_pred EcCcccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 68 ~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.+....|..+|..++.. +....++||||+|++.++.|+..|.. ++++.+|||++.+.+|..+.++|+.+ .|+||||
T Consensus 411 ~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATd 488 (844)
T 1tf5_A 411 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATN 488 (844)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCC
Confidence 34455677777776654 34567899999999999999999996 89999999999999998888888876 5999999
Q ss_pred cccccCCCC--------CcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 146 VAARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 146 ~~~~Gidi~--------~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
+++||+||+ ++.+||||++|.+.+.|+||+|||||+|.+|.+++|++..|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999 78899999999999999999999999999999999998765
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.90 E-value=8.6e-24 Score=240.53 Aligned_cols=204 Identities=20% Similarity=0.350 Sum_probs=155.3
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeee-CChHHHH-HHHHHcCCCceEEeecccccccccceEEE
Q 011149 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVKK-LSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (492)
Q Consensus 1 mL~-~GF~~~-l~~Il~~~~-----------~~~q~ll~SAT-~p~~i~~-~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 65 (492)
||+ +||.++ ++.|++.+| .+.|+++|||| .|..+.. +.+.++. +.+. .......++.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 291 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCCEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCCceeE
Confidence 466 999999 999999888 88999999999 6766553 3333333 2222 223345667777
Q ss_pred EEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cccee-eecCCCCHHHHHHHHhhhcCCCeEEEEe
Q 011149 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (492)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (492)
++.+ .+...|..++..+ +.++||||++++.++.++..|.. ++.+. .+||+ |.+ +++|++|+++||||
T Consensus 292 ~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred EEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 7666 4556667777664 48999999999999999999985 78888 99993 555 99999999999999
Q ss_pred ----cccccccCCCCC-cCEEEecCCCC----------------------------------------------------
Q 011149 144 ----TDVAARGLDIPN-VDLIIHYELPN---------------------------------------------------- 166 (492)
Q Consensus 144 ----T~~~~~Gidi~~-v~~VI~~~~P~---------------------------------------------------- 166 (492)
|+++++|||+|+ |++|||||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------ChhHHHHHhhhcccCC----CCCeEEEecChhhHHHHHHHHHHhC----CCceecCCCCH
Q 011149 167 --------------------DPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG----CKFEFVSPPVV 218 (492)
Q Consensus 167 --------------------~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l~~~~~----~~~~~~~~p~~ 218 (492)
|+.+|+||+|||||.+ .+|.+++++ .+...++.|++.+. .++..+.....
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCH
Confidence 8889999999999965 356777777 45566666666654 33333333344
Q ss_pred HHHHH
Q 011149 219 EDVLE 223 (492)
Q Consensus 219 ~~~~~ 223 (492)
+++++
T Consensus 519 ~~~~~ 523 (1104)
T 4ddu_A 519 KELVH 523 (1104)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 30
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.90 E-value=9.9e-24 Score=232.45 Aligned_cols=177 Identities=16% Similarity=0.355 Sum_probs=140.1
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH-HHHHHHHHH--c
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--A 86 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~ 86 (492)
++.|+... ++.|+|+||||++.. .+ ..|+.++..+.+... ...++++|...+..++.. .+..++..+ .
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr-----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGR-----TYPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCC-----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCc-----ccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 44455444 478999999999643 44 356666665654322 134666666665555443 333444333 2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc------------ccceeeecCCCCHHHHHHHHhhhc-----CCCeEEEEecccccc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS------------IIASEALHGDISQHQRERTLNGFR-----QGKFTVLVATDVAAR 149 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~------------~~~~~~lhg~~~~~~r~~~~~~F~-----~g~~~iLVaT~~~~~ 149 (492)
..+++||||+++++++.+++.|.. .+.+..+||+|++++|.++++.|+ +|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 468999999999999999999873 467899999999999999999999 999999999999999
Q ss_pred cCCCCCcCEEEecCC------------------CCChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 150 GLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 150 Gidi~~v~~VI~~~~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|||||+|++||++++ |.+.++|+||+|||||. .+|.|++|+++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999888 89999999999999999 79999999987664
No 31
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-22 Score=230.78 Aligned_cols=199 Identities=22% Similarity=0.301 Sum_probs=146.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChH--HHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc------
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------ 72 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~--i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~------ 72 (492)
|++++|...++.|+..++++.|+|+||||+|+. +..+...+...+..+...... +..++++++.....
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeee
Confidence 577889999999999999999999999999874 445666666666555333211 12223333221100
Q ss_pred -------------------------------------------cH---HHHHHHHHHHHc--cCCeEEEEeCChHHHHHH
Q 011149 73 -------------------------------------------SK---RTILSDLITVYA--KGGKTIVFTQTKRDADEV 104 (492)
Q Consensus 73 -------------------------------------------~k---~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l 104 (492)
.+ ...+..++..+. ...++||||++++.|+.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 00 223333444332 346899999999999999
Q ss_pred HHHHHc-cc---------------------------------------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEec
Q 011149 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (492)
Q Consensus 105 ~~~l~~-~~---------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (492)
+..|.. .+ .+.++||+|++.+|+.+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 998764 11 17889999999999999999999999999999
Q ss_pred ccccccCCCCCcCEEEecCCCC--------ChhHHHHHhhhcccCC--CCCeEEEecChh-hHHHHHHHH
Q 011149 145 DVAARGLDIPNVDLIIHYELPN--------DPETFVHRSGRTGRAG--KEGTAILMFTSS-QRRTVRSLE 203 (492)
Q Consensus 145 ~~~~~Gidi~~v~~VI~~~~P~--------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~-e~~~~~~l~ 203 (492)
+++++|||+|++++||+++.|+ ++.+|+||+|||||.| ..|.|++++.+. +...++.+.
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 9999999999999999887643 6677999999999999 688999998765 444455543
No 32
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.89 E-value=6.1e-24 Score=228.58 Aligned_cols=179 Identities=15% Similarity=0.184 Sum_probs=141.0
Q ss_pred CCCChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 2 LAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
++++|..++..|++.++ .+.|+|+||||+|..+..+++ .++..+.+... . +......++..
T Consensus 289 ~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~----~-----------~~~~~~~ll~~ 350 (618)
T 2whx_A 289 TDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE----I-----------PERSWNTGFDW 350 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC----C-----------CSSCCSSSCHH
T ss_pred CCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc----C-----------CHHHHHHHHHH
Confidence 47889999999998886 689999999999887554322 23444433211 0 00111111222
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
+. . ...++||||+|++.|+.+++.|.. .+.+..+|++ +|++++++|++|+.+||||||++++|||+| |++|
T Consensus 351 l~-~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 351 IT-D--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp HH-H--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HH-h--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 22 2 357999999999999999999985 7889999985 788899999999999999999999999997 9988
Q ss_pred --------------------EecCCCCChhHHHHHhhhcccCC-CCCeEEEecC---hhhHHHHHHHHHHh
Q 011149 160 --------------------IHYELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 206 (492)
Q Consensus 160 --------------------I~~~~P~~~~~y~qr~GR~gR~g-~~g~~i~l~~---~~e~~~~~~l~~~~ 206 (492)
|+|++|.+.++|+||+|||||.| ++|.+++|++ +.+...++.+++.+
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 77888999999999999999996 5899999997 77777788887765
No 33
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.88 E-value=3.8e-23 Score=221.20 Aligned_cols=187 Identities=22% Similarity=0.284 Sum_probs=140.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCc--EEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQ--SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q--~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
|++++|..++..|++.++...| +++||||+|..+. ...+....+.. . ....+..+ .....
T Consensus 329 ~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~-~---~~~~i~~~----~~~~~---- 390 (666)
T 3o8b_A 329 STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVAL-S---NTGEIPFY----GKAIP---- 390 (666)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEEC-B---SCSSEEET----TEEEC----
T ss_pred hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEee-c---ccchhHHH----Hhhhh----
Confidence 7899999999999999998877 6777999987422 12222222110 0 01111111 00000
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
+. .....++||||+|++.++.+++.|.+ .+.+..+||+|++++ |+++..+||||||++++|||+| |+
T Consensus 391 ---l~-~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ---IE-AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ---GG-GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ---hh-hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 11 12468999999999999999999986 789999999999874 4556669999999999999997 99
Q ss_pred EEE----------ecC-----------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHH--H--HHHHHHhCCCcee
Q 011149 158 LII----------HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEF 212 (492)
Q Consensus 158 ~VI----------~~~-----------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~--~--~~l~~~~~~~~~~ 212 (492)
+|| ||| +|.+.++|+||+||+|| +++|. ++|+++.+... + +.+++..+..+++
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 988 777 89999999999999999 99999 99998877554 3 7777777777777
Q ss_pred cCCCCHH
Q 011149 213 VSPPVVE 219 (492)
Q Consensus 213 ~~~p~~~ 219 (492)
..+|..+
T Consensus 537 ~~l~~~~ 543 (666)
T 3o8b_A 537 YELTPAE 543 (666)
T ss_dssp SCCCHHH
T ss_pred ccCCchH
Confidence 7776543
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-21 Score=219.89 Aligned_cols=198 Identities=22% Similarity=0.316 Sum_probs=146.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHH--HHHHHHcCCCceEEeecccccccccceEEEEEEcC--------
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVK--KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~--~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (492)
|+++++...++.++..+|.+.|+|+||||+|+... .........+..+...... +..++++++...
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~~ 279 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 279 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEEecCCcceeeee
Confidence 45677788889999999999999999999987532 2232333445544332111 122333333211
Q ss_pred -ccc-----------------------------------H--------HHHHHHHHHHHc--cCCeEEEEeCChHHHHHH
Q 011149 71 -ATS-----------------------------------K--------RTILSDLITVYA--KGGKTIVFTQTKRDADEV 104 (492)
Q Consensus 71 -~~~-----------------------------------k--------~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l 104 (492)
... | ...+..++..+. ...++||||+|++.|+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~l 359 (1010)
T 2xgj_A 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 359 (1010)
T ss_dssp CTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHH
Confidence 000 1 122333443332 335899999999999999
Q ss_pred HHHHHc-cc---------------------------------------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEec
Q 011149 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (492)
Q Consensus 105 ~~~l~~-~~---------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (492)
+..|.. .+ .+..+||+|++.+|+.+++.|++|.++|||||
T Consensus 360 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 360 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 988864 21 26789999999999999999999999999999
Q ss_pred ccccccCCCCCcCEEEe----cCC----CCChhHHHHHhhhcccCCC--CCeEEEecChh-hHHHHHHH
Q 011149 145 DVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-QRRTVRSL 202 (492)
Q Consensus 145 ~~~~~Gidi~~v~~VI~----~~~----P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~-e~~~~~~l 202 (492)
+++++|||+|++++||+ ||. |.++..|+||+||+||.|. .|.|++++++. +...++.+
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999999999 999 8999999999999999996 59999999865 55555555
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.88 E-value=6.1e-22 Score=217.52 Aligned_cols=186 Identities=23% Similarity=0.373 Sum_probs=136.6
Q ss_pred CCChHHHHHHHHHhC---CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeeccccccccc----ceEEEEEEcC-----
Q 011149 3 AVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE----GIKLYAISTT----- 70 (492)
Q Consensus 3 ~~GF~~~l~~Il~~~---~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~----~i~~~~~~~~----- 70 (492)
+.++...++.|+..+ +++.|+|+||||+|+ ..++++ |+..+ .+....... .... .....+....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDAD-YYVSDWRPV-PLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCE-EEECCCCSS-CEEEEEECSSEEEEEETTEEEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCC-cccCCCCCc-cceEEEeeCCeeeccCcchhhhh
Confidence 446667777776665 578999999999986 455554 55422 222111000 0000 0001111100
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------------------------------cceeeecC
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHG 119 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------------------------------~~~~~lhg 119 (492)
...+...+.++ +.+..++||||++++.++.++..|... ..+..+|+
T Consensus 228 ~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 228 RVKFEELVEEC---VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp ECCHHHHHHHH---HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhHHHHHHHH---HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 00134444333 346789999999999999999988642 25788999
Q ss_pred CCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC---CCCChhHHHHHhhhcccCC--CCCeEEEe
Q 011149 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (492)
Q Consensus 120 ~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~---~P~~~~~y~qr~GR~gR~g--~~g~~i~l 190 (492)
+|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.|+++
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999998 66 7899999999999999988 57999999
Q ss_pred cChhh
Q 011149 191 FTSSQ 195 (492)
Q Consensus 191 ~~~~e 195 (492)
+++.+
T Consensus 385 ~~~~~ 389 (702)
T 2p6r_A 385 VGKRD 389 (702)
T ss_dssp CCGGG
T ss_pred ecCcc
Confidence 99877
No 36
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.88 E-value=3.1e-23 Score=223.46 Aligned_cols=127 Identities=24% Similarity=0.235 Sum_probs=113.0
Q ss_pred EEcCcccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec
Q 011149 67 ISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (492)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (492)
+.+....|..+|..++... ....++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+|||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 3445567888887777543 4567899999999999999999985 89999999999999999999999988 599999
Q ss_pred ccccccCCCCCc-------------------------------------CEEEecCCCCChhHHHHHhhhcccCCCCCeE
Q 011149 145 DVAARGLDIPNV-------------------------------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (492)
Q Consensus 145 ~~~~~Gidi~~v-------------------------------------~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~ 187 (492)
|+|+||+||+.. .|||+|++|.+...|+||+|||||+|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999973 5999999999999999999999999999999
Q ss_pred EEecChhh
Q 011149 188 ILMFTSSQ 195 (492)
Q Consensus 188 i~l~~~~e 195 (492)
++|++..|
T Consensus 577 ~~fls~eD 584 (853)
T 2fsf_A 577 RFYLSMED 584 (853)
T ss_dssp EEEEETTS
T ss_pred EEEecccH
Confidence 99998766
No 37
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.87 E-value=6.1e-24 Score=220.55 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=123.2
Q ss_pred CChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHH
Q 011149 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (492)
.+|...+..+...+ +.+.|+++||||+|+.+..++. .+..+... ...++...+..++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~ 174 (440)
T 1yks_A 113 PASIAARGWAAHRARANESATILMTATPPGTSDEFPH----SNGEIEDV--------------QTDIPSEPWNTGHDWIL 174 (440)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEEEE--------------ECCCCSSCCSSSCHHHH
T ss_pred cchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh----cCCCeeEe--------------eeccChHHHHHHHHHHH
Confidence 33444444444443 3679999999999876543321 11111111 01111111112222222
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
+ ...++||||++++.++.+++.|.. .+.+..+|| ++|++++++|++|+++|||||+++++|||+| +++||+
T Consensus 175 ~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 A---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp H---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEE
T ss_pred h---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEe
Confidence 2 357999999999999999999985 788999999 4688999999999999999999999999999 999986
Q ss_pred -------------------cCCCCChhHHHHHhhhcccC-CCCCeEEEec---ChhhHHHHHHHHHHh
Q 011149 162 -------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (492)
Q Consensus 162 -------------------~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~l~~~~ 206 (492)
|++|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999997 6899999996 567777777777665
No 38
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.87 E-value=2.7e-23 Score=236.38 Aligned_cols=206 Identities=18% Similarity=0.279 Sum_probs=153.0
Q ss_pred hHHHHHHHHHhC-----------CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccH
Q 011149 6 FEEDVELILENL-----------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (492)
Q Consensus 6 F~~~l~~Il~~~-----------~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (492)
|..+++.|+..+ +...|+++||||++.. ..++..++.++..+.+. .......++.+.++ ...+
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SCCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---chhH
Confidence 446677777776 4578999999999887 65555565555444332 22233456666666 2455
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEe----ccccccc
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARG 150 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa----T~~~~~G 150 (492)
...|..++..+ +.++||||+|++.|+.+++.|...+.+..+||+| .+++++|++|+++|||| |+++++|
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 66666666543 5789999999999999999998668999999998 47889999999999999 9999999
Q ss_pred CCCCCc-CEEEecCCC----------------------------------------------------------------
Q 011149 151 LDIPNV-DLIIHYELP---------------------------------------------------------------- 165 (492)
Q Consensus 151 idi~~v-~~VI~~~~P---------------------------------------------------------------- 165 (492)
||+|+| ++||+|++|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999995 999999999
Q ss_pred -------CChhHHHHHhhhcccCCCCC--eEEEecChhhHHHHHHHHHHhC---CCceecCCCCHHHHHHH
Q 011149 166 -------NDPETFVHRSGRTGRAGKEG--TAILMFTSSQRRTVRSLERDVG---CKFEFVSPPVVEDVLES 224 (492)
Q Consensus 166 -------~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~e~~~~~~l~~~~~---~~~~~~~~p~~~~~~~~ 224 (492)
.+..+|+||+|||||.|..| .+++++...+...++.|++.++ ..+..+.....+++++.
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 487 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRE 487 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHH
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHh
Confidence 78999999999999987665 4676666667778888887766 34555555556665554
No 39
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.87 E-value=7.3e-22 Score=217.50 Aligned_cols=199 Identities=22% Similarity=0.243 Sum_probs=145.5
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEE------EcC-----
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI------STT----- 70 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~------~~~----- 70 (492)
.+..+...++.|+..++.+.|+|+||||+|+ ...+++ |+..+ .+... ... ..+...+. ...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~---~rp--~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAE-LIVSD---WRP--VKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEE-EEECC---CCS--SEEEEEEEETTEEEETTSCEEE
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCc-ccCCC---CCC--CcceEEEEeCCeeeccccchhh
Confidence 3457788899999988778999999999986 355554 55421 11111 000 01111111 111
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc----------------------------------cceee
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEA 116 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~----------------------------------~~~~~ 116 (492)
...+...+.++ +.++.++||||++++.++.++..|.+. ..+..
T Consensus 223 ~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 223 FSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp CSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEE
T ss_pred hhHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeee
Confidence 12333333333 345689999999999999999988742 13889
Q ss_pred ecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC----CCCChhHHHHHhhhcccCC--CCCe
Q 011149 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGT 186 (492)
Q Consensus 117 lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~----~P~~~~~y~qr~GR~gR~g--~~g~ 186 (492)
+|++|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 999999999999999999999999999999999999999999998 77 6899999999999999988 5789
Q ss_pred EEEecChhhHHHHHHHHHHhCCCceec
Q 011149 187 AILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 187 ~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
|++++++.+. ...+++.+..+++.+
T Consensus 380 ~~~l~~~~~~--~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 380 GIIVSTSDDP--REVMNHYIFGKPEKL 404 (720)
T ss_dssp EEEECSSSCH--HHHHHHHTTSCCCCC
T ss_pred EEEEecCccH--HHHHHHHhcCCCCCc
Confidence 9999988762 223445554454443
No 40
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=2.2e-21 Score=210.59 Aligned_cols=174 Identities=20% Similarity=0.320 Sum_probs=131.9
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCCh
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~ 98 (492)
...|+++||||+++...... ... +............ ...+......+..++..+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~--~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEM--VEQIIRPTGLLDP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSC--EEECCCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHhh----hCe--eeeeecccCCCCC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 46899999999987643221 111 2221111111111 12222222333444455555445667999999999
Q ss_pred HHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC-----CCChhHHH
Q 011149 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (492)
Q Consensus 99 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~-----P~~~~~y~ 172 (492)
..++.+++.|.+ ++.+..+|+++++.+|.+++++|++|+++|||||+++++|+|+|+|++||+++. |.+.++|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999986 789999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
||+||+||. .+|.+++|+++.+....+.|
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999998 78999999988655444433
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.87 E-value=1.3e-21 Score=208.51 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------cceeeecCCCCHHHHHHHHhhhcC-
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~- 135 (492)
.|...|..+|... ....++||||++++.++.+++.|... .....+|++|++.+|.+++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 3555566666443 45689999999999999999999742 234456788999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHH
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 197 (492)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999999999 999 899999999886643
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.87 E-value=1.3e-22 Score=222.72 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=80.8
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-c----cceeee--------cCCCCHHHHHHHHhhhcC
Q 011149 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFRQ 135 (492)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~----~~~~~l--------hg~~~~~~r~~~~~~F~~ 135 (492)
..|...|..++... .+..++||||++++.++.+++.|.. . +.+..+ |++|++++|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777777665 2457999999999999999999986 3 788888 559999999999999998
Q ss_pred -CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 136 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 136 -g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
|+++|||||+++++|||+|+|++||+||+|+++++|+||+|| ||. +.|.+++|++..+......+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 78999999998776544444
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.87 E-value=1.3e-21 Score=211.11 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=111.2
Q ss_pred EcCcccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 68 ~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.+....|..+|...+.. +....++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+||||
T Consensus 439 ~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 439 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 34445677777766644 34567899999999999999999985 89999999999888888888999988 5999999
Q ss_pred cccccCCCCCc----------------------------------------------------CEEEecCCCCChhHHHH
Q 011149 146 VAARGLDIPNV----------------------------------------------------DLIIHYELPNDPETFVH 173 (492)
Q Consensus 146 ~~~~Gidi~~v----------------------------------------------------~~VI~~~~P~~~~~y~q 173 (492)
+++||+||+.+ .|||+|++|.+...|+|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999975 49999999999999999
Q ss_pred HhhhcccCCCCCeEEEecChhhH
Q 011149 174 RSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 174 r~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|+|||||+|.+|.+++|++..|.
T Consensus 597 r~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcccccCCCCeeEEEEechhHH
Confidence 99999999999999999987654
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.87 E-value=2.2e-21 Score=213.62 Aligned_cols=202 Identities=23% Similarity=0.344 Sum_probs=139.3
Q ss_pred CCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccce--------EEEEEEcC----
Q 011149 3 AVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--------KLYAISTT---- 70 (492)
Q Consensus 3 ~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i--------~~~~~~~~---- 70 (492)
+..|...++.|+..++ +.|+|+||||+++ ...+++ |+..+ .+...... ......+ ........
T Consensus 159 ~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 159 DPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAE-PVATNWRP-VPLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp CTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCE-EEECCCCS-SCEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred CcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCC-ccCCCCCC-CCceEEEEecCCcccceeeecCcchhh
Confidence 4567788888888887 8999999999986 355555 44422 12111000 0000000 00011111
Q ss_pred ----cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----------------------------------
Q 011149 71 ----ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------- 111 (492)
Q Consensus 71 ----~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~----------------------------------- 111 (492)
...+ +..+.+.+.++.++||||++++.++.++..|.+.
T Consensus 234 ~~~~~~~~---~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 234 KVHGDDAI---IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEESSSHH---HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hcccchHH---HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 1223 3333444456789999999999999999998742
Q ss_pred --cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC-------CCCChhHHHHHhhhc
Q 011149 112 --IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVHRSGRT 178 (492)
Q Consensus 112 --~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~-------~P~~~~~y~qr~GR~ 178 (492)
..+..+|++|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24789999999999999999999999999999999999999999999999 99 899999999999999
Q ss_pred ccCC--CCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 179 GRAG--KEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 179 gR~g--~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
||.| ..|.|++++++.+. ....+++.+...++.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCC
T ss_pred CCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCc
Confidence 9988 57999999987653 1223334444444443
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.86 E-value=9.8e-23 Score=220.71 Aligned_cols=175 Identities=14% Similarity=0.181 Sum_probs=130.1
Q ss_pred hHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHH
Q 011149 6 FEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (492)
Q Consensus 6 F~~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 84 (492)
+..++..+...++ .+.|+|+||||+|+.+..+.. .+...+.+.. ..+...+..++..+.
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~---~~~~i~~v~~---------------~~~~~~~~~~l~~l~-- 407 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD---TNSPVHDVSS---------------EIPDRAWSSGFEWIT-- 407 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC---------------CCCSSCCSSCCHHHH--
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc---cCCceEEEee---------------ecCHHHHHHHHHHHH--
Confidence 3444555555543 689999999999876543221 1111111110 011111111222222
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe--
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-- 161 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~-- 161 (492)
....++||||++++.++.+++.|.. .+.+..+||. +|++++++|++|+++|||||+++++|||+| +++|||
T Consensus 408 -~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 408 -DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp -SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred -hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 2467999999999999999999986 7899999994 799999999999999999999999999999 999998
Q ss_pred ------------------cCCCCChhHHHHHhhhcccC-CCCCeEEEec---ChhhHHHHHHHHHHh
Q 011149 162 ------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (492)
Q Consensus 162 ------------------~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~l~~~~ 206 (492)
|++|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67999999999999999998 7899999996 566666666666654
No 46
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.86 E-value=7.3e-21 Score=206.57 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=133.2
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCCh
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~ 98 (492)
...|+++||||+++..... . ...+............ ...+.........++..+......+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998764221 1 1122221111111111 12222222233344444444444678999999999
Q ss_pred HHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC-----CCChhHHH
Q 011149 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (492)
Q Consensus 99 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~-----P~~~~~y~ 172 (492)
..++.+++.|.+ ++.+..+|++|++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 999999999986 788999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
||+||+||.+ +|.+++++++.+....+.|++
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999984 899999998877666655543
No 47
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.85 E-value=1.3e-20 Score=199.31 Aligned_cols=180 Identities=19% Similarity=0.174 Sum_probs=138.3
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHHHHHHHH-ccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~ 99 (492)
++..||+|+..+...+.+.|--+ ++.+. .+.+...+.+ ..+......|...+...+... ....++||||+|++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l~--vv~IP---tnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGME--VVVIP---THKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCCC--EEECC---CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhCCe--EEEEC---CCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 57889999998888887777432 33331 2222223332 234455667887777766543 45689999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC--------CcCEEEecCCCCChhH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPET 170 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~--------~v~~VI~~~~P~~~~~ 170 (492)
.++.|+..|.+ ++++.+||++..+.++..+.++|+.+ .|+||||+++||+||+ ++.+||++++|.+...
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999996 89999999996666666666777766 5999999999999998 5669999999999999
Q ss_pred HHHHhhhcccCCCCCeEEEecChhhH-------HHHHHHHHHhCC
Q 011149 171 FVHRSGRTGRAGKEGTAILMFTSSQR-------RTVRSLERDVGC 208 (492)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e~-------~~~~~l~~~~~~ 208 (492)
|+||+|||||+|.+|.+++|++..|. ..++.+.+.++.
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 99999999999999999999987662 344555555543
No 48
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.85 E-value=2.3e-21 Score=206.40 Aligned_cols=128 Identities=24% Similarity=0.358 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-----cce--------eeecCCCCHHHHHHHHhhhcC-
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----IAS--------EALHGDISQHQRERTLNGFRQ- 135 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~--------~~lhg~~~~~~r~~~~~~F~~- 135 (492)
.|...|..+|... .+..++||||++++.++.++..|... +.+ ..+||+|++++|.+++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 3555566666543 24589999999999999999999852 333 345669999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
|+++|||||+++++|||+|++++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 89999999998776544433
No 49
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=8.9e-21 Score=197.63 Aligned_cols=122 Identities=34% Similarity=0.550 Sum_probs=108.2
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecC--------CCCHHHHHHHHhhhcCCCeEE
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg--------~~~~~~r~~~~~~F~~g~~~i 140 (492)
.|...|.+++..+ ....++||||++++.++.+++.|.. .+.+..+|| +|++.+|.+++++|++++++|
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 4566666666654 3578999999999999999999986 788999999 999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
||||+++++|||+|++++||+||+|+++..|+||+||++|.|. |.+++|+++.+
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999997 99999988753
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.84 E-value=1.2e-22 Score=212.12 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=92.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe-----
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 161 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----- 161 (492)
..++||||+|++.++.+++.|.. .+.+..+|++ +|++++++|++|+.+|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 57999999999999999999986 7899999995 7889999999999999999999999999999 99999
Q ss_pred ---------------cCCCCChhHHHHHhhhcccCCC-CCeEEEecChh
Q 011149 162 ---------------YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 194 (492)
Q Consensus 162 ---------------~~~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~~~ 194 (492)
|++|.+.++|+||+||+||.|. +|.+++|+++.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999998875
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.84 E-value=2.2e-20 Score=210.83 Aligned_cols=126 Identities=25% Similarity=0.327 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cc---------------------------------------ce
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------AS 114 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~---------------------------------------~~ 114 (492)
...+...+... ...++||||+|++.|+.++..|.. .+ .+
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 33344444332 346999999999999999998864 22 47
Q ss_pred eeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC---------CChhHHHHHhhhcccCC--C
Q 011149 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP---------NDPETFVHRSGRTGRAG--K 183 (492)
Q Consensus 115 ~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P---------~~~~~y~qr~GR~gR~g--~ 183 (492)
..+|++|++.+|+.+++.|++|.++|||||+++++|||+|++.+|| +++| .++.+|+||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-eccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 8999999999999999999999999999999999999999955554 4444 49999999999999988 6
Q ss_pred CCeEEEecC--hhhHHHHHHH
Q 011149 184 EGTAILMFT--SSQRRTVRSL 202 (492)
Q Consensus 184 ~g~~i~l~~--~~e~~~~~~l 202 (492)
.|.+++++. +.+...++.+
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH
Confidence 788888873 3344455544
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.84 E-value=5e-21 Score=199.35 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=121.8
Q ss_pred CChHHHHHHHHHh-CCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHH
Q 011149 4 VGFEEDVELILEN-LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~-~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (492)
+.+...+..+... .+++.|+++||||+|..+..+ +..++..+.+.. ..+.. .+ ..+ ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~----~~p~~--~~------~~~----~~~l 184 (451)
T 2jlq_A 124 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER----EIPER--SW------NTG----FDWI 184 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC----CCCSS--CC------SSS----CHHH
T ss_pred cchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCc----cCCch--hh------HHH----HHHH
Confidence 3344444444332 356899999999998754432 333444443321 00000 00 011 1222
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
.. ...++||||+|++.|+.+++.|.+ .+.+..+|+++ ++++++.|++|+.+|||||+++++|||+|+ ++|||
T Consensus 185 ~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 185 TD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEE
T ss_pred Hh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEE
Confidence 22 356999999999999999999986 78899999975 357999999999999999999999999999 99999
Q ss_pred cC--------------------CCCChhHHHHHhhhcccCCC-CCeEEEecCh
Q 011149 162 YE--------------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 193 (492)
Q Consensus 162 ~~--------------------~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~~ 193 (492)
|+ +|.+.++|+||+||+||.|+ +|.+++|+..
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99 99999999999999999997 8889888753
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.84 E-value=1.4e-20 Score=215.48 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=144.1
Q ss_pred HHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccC
Q 011149 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG 88 (492)
Q Consensus 9 ~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 88 (492)
...++++.++.+.|+++||||+++....++...+.++..+... ......+..++... .+..+...++..+..+
T Consensus 740 ~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~----~~~r~~i~~~~~~~---~~~~i~~~il~~l~~g 812 (1151)
T 2eyq_A 740 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP----PARRLAVKTFVREY---DSMVVREAILREILRG 812 (1151)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC----CCBCBCEEEEEEEC---CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC----CCCccccEEEEecC---CHHHHHHHHHHHHhcC
Confidence 4566777788889999999998777776665555544333211 11122344443332 3445556666666677
Q ss_pred CeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC-
Q 011149 89 GKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL- 164 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~- 164 (492)
.++||||++++.++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~ 892 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 892 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC
Confidence 8999999999999999999986 467999999999999999999999999999999999999999999999999988
Q ss_pred CCChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 165 P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
+++...|+||+||+||.|+.|.|++++.+.
T Consensus 893 ~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 893 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 579999999999999999999999998764
No 54
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.83 E-value=6.7e-20 Score=203.98 Aligned_cols=122 Identities=20% Similarity=0.346 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------cceeeecCCCCHHHHHHHHhhhcC-
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~- 135 (492)
.|...|..+|... ....++||||++++.++.|+..|... ..+..+||+|++.+|.+++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555555565542 34589999999999999999999752 245567899999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+.
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999999999999999 999 89999999988654
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.83 E-value=4.6e-20 Score=208.31 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=142.3
Q ss_pred CcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCC--eEEEEecc
Q 011149 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATD 145 (492)
Q Consensus 70 ~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~--~~iLVaT~ 145 (492)
....|...|..++.. .+..++||||+++..++.++..|.. ++.+..+||+|++.+|++++++|++++ ++|||||+
T Consensus 486 ~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 445688888888876 3578999999999999999999984 789999999999999999999999998 99999999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh--CCCceecCCCCHHHHHH
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVLE 223 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~--~~~~~~~~~p~~~~~~~ 223 (492)
++++|||+|++++||+||+|+++..|+||+||++|.|+++.+++++...+....+.|.+.+ +.++....+|...++.+
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~ 644 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHH
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHHH
Confidence 9999999999999999999999999999999999999988777765544444445555555 55666678889999988
Q ss_pred HHHHHHHHHhccC
Q 011149 224 SSAEQVVATLNGV 236 (492)
Q Consensus 224 ~~~~~~~~~l~~~ 236 (492)
...+.+...+...
T Consensus 645 ~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 645 SVYNDLINYLASP 657 (968)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 8888888777653
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.83 E-value=2.7e-20 Score=201.14 Aligned_cols=193 Identities=18% Similarity=0.176 Sum_probs=142.2
Q ss_pred CCCCChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (492)
|++++|...++.++..++ .+.|++++|||. +.+..++... .....+... ... ..+. +.... +.
T Consensus 251 l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~----~r~-~~l~---~~~~~------l~ 314 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY----KRL-TPIS---VLDHA------LE 314 (677)
T ss_dssp GGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC----CCS-SCEE---ECSSC------CC
T ss_pred cCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe----eec-chHH---HHHHH------HH
Confidence 568899999999999998 788999999996 3455555443 233333211 000 0110 00000 00
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC--CCeEEEEecccccccCCCCCc
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNV 156 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gidi~~v 156 (492)
.+.. .....||||+|++.++.+++.|.+ .+.+..+||+|++++|+++++.|++ |.++|||||+++++|||+ +|
T Consensus 315 -~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v 390 (677)
T 3rc3_A 315 -SLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SI 390 (677)
T ss_dssp -SGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CB
T ss_pred -HHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Cc
Confidence 0111 134568999999999999999986 7899999999999999999999999 889999999999999999 89
Q ss_pred CEEEecCC--------------CCChhHHHHHhhhcccCCCC---CeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 157 DLIIHYEL--------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 157 ~~VI~~~~--------------P~~~~~y~qr~GR~gR~g~~---g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
++||++++ |.+.++|+||+|||||.|.. |.|++++.. +...++.+.......++...
T Consensus 391 ~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~~~ 464 (677)
T 3rc3_A 391 RRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRAAG 464 (677)
T ss_dssp SEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCCEE
T ss_pred cEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhhcc
Confidence 99999999 88999999999999999964 666666544 55566666655555555533
No 57
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=205.95 Aligned_cols=103 Identities=28% Similarity=0.518 Sum_probs=89.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-------ccceeeecCC--------CCHHHHHHHHhhhcCCCeEEEEecccccccCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~--------~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid 152 (492)
..++||||++++.++.|++.|.. ++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999986 4889999999 99999999999999999999999999999999
Q ss_pred CCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecCh
Q 011149 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 153 i~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
+|+|++||+||+|++++.|+||+||++|.| .+++++.+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999976544 55555543
No 58
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.81 E-value=4.3e-19 Score=200.03 Aligned_cols=121 Identities=21% Similarity=0.348 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------cceeeecCCCCHHHHHHHHhhhcC-C
Q 011149 74 KRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ-G 136 (492)
Q Consensus 74 k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~-g 136 (492)
|...|..+|... ....++||||++++.++.|+..|... ..+..+||+|++.+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 444455555443 24579999999999999999999852 234556899999999999999999 9
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+.
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999 998 78999999887654
No 59
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.81 E-value=2.8e-20 Score=204.05 Aligned_cols=174 Identities=17% Similarity=0.270 Sum_probs=127.9
Q ss_pred CCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeC
Q 011149 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (492)
Q Consensus 17 ~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~ 96 (492)
...+.|+++||||+++....+. ++.+.....+...... ...+..++ ........++..+.+......+++|||+
T Consensus 513 ~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~--r~~i~~~~--~~~~~~~~l~~~i~~~l~~g~qvlVf~~ 586 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPG--RKEVQTML--VPMDRVNEVYEFVRQEVMRGGQAFIVYP 586 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSS--CCCCEECC--CCSSTHHHHHHHHHHHTTTSCCBCCBCC
T ss_pred hCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCC--CcceEEEE--eccchHHHHHHHHHHHHhcCCcEEEEec
Confidence 3457899999999866554433 3333222111111111 12232222 2333444455555555556789999999
Q ss_pred Ch--------HHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC
Q 011149 97 TK--------RDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (492)
Q Consensus 97 t~--------~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~ 164 (492)
+. ..++.+++.|.. .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++||++++
T Consensus 587 ~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~ 666 (780)
T 1gm5_A 587 LIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENP 666 (780)
T ss_dssp CC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSC
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCC
Confidence 66 457788888876 357899999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 165 P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|. +...|+||+||+||.|++|.|++++.+.+.
T Consensus 667 ~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 667 ERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE 699 (780)
T ss_dssp SSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH
T ss_pred CCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh
Confidence 96 788999999999999999999999985333
No 60
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.81 E-value=3.5e-20 Score=191.81 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=115.0
Q ss_pred ChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011149 5 GFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (492)
Q Consensus 5 GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (492)
+|...+..+.... +.+.|+|+||||+|+.+..+.. .++..+.+.. ..+.... ..+..++.
T Consensus 108 ~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~i~~~~~---------------~~~~~~~-~~~~~~l~ 168 (431)
T 2v6i_A 108 ASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---SNSPIIDEET---------------RIPDKAW-NSGYEWIT 168 (431)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---CSSCCEEEEC---------------CCCSSCC-SSCCHHHH
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---CCCceeeccc---------------cCCHHHH-HHHHHHHH
Confidence 3455555555443 5689999999999875432211 0111111110 0111111 11112222
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE----
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL---- 158 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~---- 158 (492)
. ...++||||++++.++.+++.|.. .+.+..+||+ +|++++++|++|+++|||||+++++|||+| +.+
T Consensus 169 ~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 169 E--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp S--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEEC
T ss_pred c--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEec
Confidence 2 357899999999999999999986 7889999997 578899999999999999999999999999 655
Q ss_pred -------------EEecCCCCChhHHHHHhhhcccCCC-CCeEEEec
Q 011149 159 -------------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 191 (492)
Q Consensus 159 -------------VI~~~~P~~~~~y~qr~GR~gR~g~-~g~~i~l~ 191 (492)
||+++.|.+.++|+||+||+||.+. .+.++++.
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999985 55555554
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.80 E-value=8.2e-19 Score=206.63 Aligned_cols=188 Identities=14% Similarity=0.164 Sum_probs=136.6
Q ss_pred HHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccH-------HHHHHHHHHH
Q 011149 12 LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-------RTILSDLITV 84 (492)
Q Consensus 12 ~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~ll~~ 84 (492)
.|..+++.+.|+|+||||+|+ ..++++..-.++..+........ +..++.+......... ...+...+..
T Consensus 1075 ~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 1151 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQTRLLSMAKPVYHAITK 1151 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHH
T ss_pred HHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchhhhhhhcchHHHHHHH
Confidence 344556789999999999986 45666544334333322211111 2223333322222221 1223344555
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHcc-----------------------------------cceeeecCCCCHHHHHHH
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTSI-----------------------------------IASEALHGDISQHQRERT 129 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~~-----------------------------------~~~~~lhg~~~~~~r~~~ 129 (492)
+....++||||+|++.|+.++..|... ..+.++|++|++.+|..+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 566789999999999999888766321 247789999999999999
Q ss_pred HhhhcCCCeEEEEecccccccCCCCCcCEEEe----------cCCCCChhHHHHHhhhcccCCC--CCeEEEecChhhHH
Q 011149 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----------YELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQRR 197 (492)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----------~~~P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e~~ 197 (492)
++.|++|.++|||||+++++|||+|.+.+||. ...|.++.+|+||+|||||+|. .|.+++++.+.+..
T Consensus 1232 E~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~ 1311 (1724)
T 4f92_B 1232 EQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKD 1311 (1724)
T ss_dssp HHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHH
T ss_pred HHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHH
Confidence 99999999999999999999999999999993 2347789999999999999985 79999999988877
Q ss_pred HHHHH
Q 011149 198 TVRSL 202 (492)
Q Consensus 198 ~~~~l 202 (492)
.++++
T Consensus 1312 ~~~~l 1316 (1724)
T 4f92_B 1312 FFKKF 1316 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.77 E-value=7e-20 Score=191.81 Aligned_cols=114 Identities=25% Similarity=0.452 Sum_probs=101.1
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccccc
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (492)
...|...|.+++... ...++||||++++.++.+++.|. +..+||++++.+|++++++|++++++|||||+++++|
T Consensus 333 ~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~G 407 (472)
T 2fwr_A 333 SKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 407 (472)
T ss_dssp CSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred ChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcC
Confidence 345677777777763 56899999999999999998874 6789999999999999999999999999999999999
Q ss_pred CCCCCcCEEEecCCCCChhHHHHHhhhcccCCCC-CeEEE
Q 011149 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAIL 189 (492)
Q Consensus 151 idi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~-g~~i~ 189 (492)
+|+|++++||++++|+++..|+||+||++|.|.. +.+++
T Consensus 408 ldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 408 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred cccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 9999999999999999999999999999999854 34443
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=1.5e-18 Score=204.32 Aligned_cols=184 Identities=20% Similarity=0.318 Sum_probs=132.4
Q ss_pred HhCCCCCcEEEEeeeCChHHHHHHHHHcC-CCc-eEEeecccccccccceEEEEEEcCcccH---HHHHHHHH----HHH
Q 011149 15 ENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTATSK---RTILSDLI----TVY 85 (492)
Q Consensus 15 ~~~~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~-~i~~~~~~~~~~~~~i~~~~~~~~~~~k---~~~l~~ll----~~~ 85 (492)
..++++.|+|++|||+|+ +.++++ |+. ++. .+.+.... .-+..+++.++....... ...+..++ ..+
T Consensus 239 ~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH 314 (1724)
T ss_dssp HHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH
Confidence 456789999999999986 556665 554 221 12222111 112334444444433322 22232222 222
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc--------------------------------------cceeeecCCCCHHHHH
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRE 127 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~r~ 127 (492)
....++||||+|++.|+.++..|.+. ..+.++|++|++.+|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 24568999999999999888877521 1367899999999999
Q ss_pred HHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC------CCCChhHHHHHhhhcccCC--CCCeEEEecChhh
Q 011149 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (492)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~------~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 195 (492)
.+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|+||+|||||.| ..|.+++++++.+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999995 44 3568999999999999987 5799999988877
Q ss_pred HHHHHHH
Q 011149 196 RRTVRSL 202 (492)
Q Consensus 196 ~~~~~~l 202 (492)
...+..+
T Consensus 475 ~~~~~~l 481 (1724)
T 4f92_B 475 LQYYLSL 481 (1724)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 64
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=1.2e-18 Score=168.67 Aligned_cols=124 Identities=15% Similarity=0.273 Sum_probs=96.8
Q ss_pred CcccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCC-CeE-EEEec
Q 011149 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVAT 144 (492)
Q Consensus 70 ~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~-iLVaT 144 (492)
....|...|..+|..+ ..+.++||||+++..++.|...|.. ++.+..+||++++.+|++++++|+++ .++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567899888888765 3567999999999999999999985 78899999999999999999999998 676 78999
Q ss_pred ccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeE--EEecCh
Q 011149 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 193 (492)
Q Consensus 145 ~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 193 (492)
+++++|||++.+++||+||+||++..|+||+||++|.|+++.+ +.|++.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999999999977654 444443
No 65
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.76 E-value=2.3e-18 Score=181.98 Aligned_cols=184 Identities=11% Similarity=0.110 Sum_probs=127.7
Q ss_pred HHHHHHHHhCCCCCcEEEEeeeCChHHHHHHH-HHcCCCceEEeeccc----ccccccceEEEEEEcCc-----------
Q 011149 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSR-KYLDNPLNIDLVGNQ----DEKLAEGIKLYAISTTA----------- 71 (492)
Q Consensus 8 ~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~-~~~~~~~~i~~~~~~----~~~~~~~i~~~~~~~~~----------- 71 (492)
.++..|++.++...++++||||+|.....+.. ..+.++..+.+.... .......+....+..+.
T Consensus 240 ~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (510)
T 2oca_A 240 KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTY 319 (510)
T ss_dssp HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCH
T ss_pred ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccch
Confidence 56778889998889999999999766433211 112233322221100 00011111111111111
Q ss_pred ----------ccHHHHHHHHHHHH-ccC-CeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe
Q 011149 72 ----------TSKRTILSDLITVY-AKG-GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (492)
Q Consensus 72 ----------~~k~~~l~~ll~~~-~~~-~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (492)
..+...+..++... ... .++||||+ .+.++.+++.|.+ ...+..+||+|++.+|+++++.|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 320 QEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 12333344444433 223 35566666 8889999999986 4689999999999999999999999999
Q ss_pred EEEEec-ccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 139 TVLVAT-DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 139 ~iLVaT-~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
+||||| +++++|+|+|++++||++++|+++..|+||+||+||.|..+.++++++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999998774444443
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.73 E-value=1.8e-17 Score=178.38 Aligned_cols=97 Identities=22% Similarity=0.319 Sum_probs=86.3
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHccc---------ceeeecCCCCHHHHHHHHhhhcCCCeE---EEEecccccccCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAARGLDI 153 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~~---------~~~~lhg~~~~~~r~~~~~~F~~g~~~---iLVaT~~~~~Gidi 153 (492)
....++||||++++.|+.+++.|.+.. .+..+||++++ +|++++++|++++.+ |||||+++++|||+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 345799999999999999999997521 26788999764 799999999998766 89999999999999
Q ss_pred CCcCEEEecCCCCChhHHHHHhhhcccCCC
Q 011149 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (492)
Q Consensus 154 ~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (492)
|++++||++++|+++..|+||+||++|.+.
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 999999999999999999999999999763
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.62 E-value=1.3e-15 Score=160.50 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCC-CeE-EEEeccc
Q 011149 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~-iLVaT~~ 146 (492)
..|...+.+++... ..+.++||||+++..++.++..|.. .+.+..+||++++.+|++++++|+++ ..+ +||+|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 46777777777654 4567999999999999999999985 68899999999999999999999988 555 7999999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEE
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (492)
+++|||+|.+++||+||+|+++..|+||+||++|.|.+..+++
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999999997765533
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.59 E-value=1.1e-14 Score=158.02 Aligned_cols=134 Identities=12% Similarity=0.254 Sum_probs=112.2
Q ss_pred ccHHHHHHHHHHHHc--cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe---EEEEecc
Q 011149 72 TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 145 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~---~iLVaT~ 145 (492)
..|..+|..++..+. .+.++||||+++..++.|...|.. ++.+..+||++++++|++++++|+++.. .+||+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 457778888877653 467999999999999999999985 7899999999999999999999999865 4899999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEE--ecChh--hHHHHHHHHHH
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERD 205 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~--l~~~~--e~~~~~~l~~~ 205 (492)
+++.|||++.+++||+||+||++..|.|++||++|.|.+..+++ |+... |...++.++++
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997665443 44432 44444444433
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.5e-14 Score=156.85 Aligned_cols=137 Identities=18% Similarity=0.318 Sum_probs=116.1
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe---EEEEeccc
Q 011149 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~---~iLVaT~~ 146 (492)
..|+.+|..+|..+. .+.++||||.....++.|...|.. ++.+..+||.+++.+|++++++|+++.. .+||+|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 457888888887763 457999999999999999999985 8899999999999999999999998654 49999999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeE--EEecChh--hHHHHHHHHHHhCC
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTSS--QRRTVRSLERDVGC 208 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~--i~l~~~~--e~~~~~~l~~~~~~ 208 (492)
++.|||++.+++||+||+||++..++|++||+.|.|.+..+ +.|++.. |...++.++++...
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999966544 4445443 56666666666543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.47 E-value=6.1e-13 Score=149.78 Aligned_cols=119 Identities=10% Similarity=0.111 Sum_probs=93.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-------------cce-eeecCC----------C----------CH-----------
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-------------IAS-EALHGD----------I----------SQ----------- 123 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-------------~~~-~~lhg~----------~----------~~----------- 123 (492)
.++||||+++..|..+++.|.+. +.+ .++|++ + ++
T Consensus 538 ~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~ 617 (1038)
T 2w00_A 538 FNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIR 617 (1038)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHH
Confidence 58999999999999999998752 344 455542 2 22
Q ss_pred ------------------HHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCC-
Q 011149 124 ------------------HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE- 184 (492)
Q Consensus 124 ------------------~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~- 184 (492)
.+|..++++|++++++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+..
T Consensus 618 dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~ 696 (1038)
T 2w00_A 618 EYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDAT 696 (1038)
T ss_dssp HHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCC
Confidence 248889999999999999999999999999999 788999999999999999999998753
Q ss_pred ---CeEEEecChhhHHHHHHHHHHhCCC
Q 011149 185 ---GTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 185 ---g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
|.++.|+.. .....+.|..+....
T Consensus 697 K~~G~IVdf~~~-~~~l~~Al~~y~~~~ 723 (1038)
T 2w00_A 697 KTFGNIVTFRDL-ERSTIDAITLFGDKN 723 (1038)
T ss_dssp CCSEEEEESSCC-HHHHHHHHHHTSCSS
T ss_pred CCcEEEEEcccc-HHHHHHHHHHHhCCC
Confidence 666666653 334445555444443
No 71
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.98 E-value=3.8e-10 Score=74.48 Aligned_cols=38 Identities=24% Similarity=0.577 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 417 SSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 417 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
.|++||+.||.+++|+... ...||+||++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~--------------------------------------~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPR--------------------------------------QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCC--------------------------------------CSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCC--------------------------------------CCccccCCCCCCccCcCcC
Confidence 3899999999999997541 0139999999999999996
No 72
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.92 E-value=3.1e-10 Score=82.75 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
+.||+|++.||++++|+...... . .+.....||+||++||||+|||+
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~---------------------~---------~~~~~~~C~~Cg~~GH~ar~C~~ 48 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNN---------------------A---------EPKVPGLCPRCKRGKHWANECKS 48 (60)
T ss_dssp ---------------------------------------------------------CCCSCSSCSSCSSCSTTCCC
T ss_pred CccccCCCCCcCHhhCcCCCCCc---------------------c---------ccCCCcceeECCCCCCccCcCCC
Confidence 56999999999999998652210 0 01123459999999999999995
No 73
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.91 E-value=7.1e-10 Score=72.26 Aligned_cols=36 Identities=19% Similarity=0.483 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 417 SSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 417 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
.|++||+.||.+++|+.+ ..||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~----------------------------------------~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP----------------------------------------KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB----------------------------------------TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc----------------------------------------CeEccCCCcCCccCcCcC
Confidence 489999999999999743 129999999999999996
No 74
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.84 E-value=1.7e-09 Score=75.12 Aligned_cols=39 Identities=23% Similarity=0.597 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||.+++|+... ...||+||++||+|+|||+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~~--------------------------------------~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAPR--------------------------------------RQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCSS--------------------------------------CCSCSSSCCSSCCGGGCCS
T ss_pred CeeeecCCCCcChhhCcCCC--------------------------------------CCeeCcCCCcCCccCCCcC
Confidence 56999999999999997641 0129999999999999995
No 75
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=6.1e-09 Score=76.41 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||.+++|+.... ...||+|+++||+|+|||+
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~-------------------------------------~~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQ-------------------------------------PKKCHFCQSISHMVASCPL 47 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCC-------------------------------------SSCCTTTCCSSSCTTTCTG
T ss_pred CcccccCCCCcChhhCCCCCC-------------------------------------CCccCCcCCcCCccCcCCC
Confidence 569999999999999975410 1239999999999999994
No 76
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=98.76 E-value=1.7e-08 Score=79.52 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=71.8
Q ss_pred HcCCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCC-CcCccccEEEeecCccceeEeecCHHHH
Q 011149 267 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIA 345 (492)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~ig~i~~~~~~~~~gs~fdv~~~~a 345 (492)
++|+++ ++.|||+++.+|++|+.+..+.+ .-.+..++.+|.+..+. ..++|++|.++++. +|++||||++.+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~~----i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~--~GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLEE----IQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSSC----CSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCCc----ccchHHHHHHHHHhcCHHHHhhhCeEEEecCC--CEEEEECcHHHH
Confidence 457777 55699999999999999988763 34688888999986654 45679999999885 499999999999
Q ss_pred HHHHhhcCCCCCceeee
Q 011149 346 KELLNKQIPPGNTISKI 362 (492)
Q Consensus 346 ~~~i~~~~~~~i~~~~~ 362 (492)
+++++.+.+..++++++
T Consensus 75 ~~~~~~~~~~~~~l~v~ 91 (92)
T 2e29_A 75 ERLQAEWHDSDWILSVP 91 (92)
T ss_dssp HHHHHHCCSSSCEEECC
T ss_pred HHHHhhCCCCceEEEec
Confidence 99999987644666554
No 77
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.74 E-value=3.3e-09 Score=75.79 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||.+++|+... ...||+||++||+|+|||+
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~~--------------------------------------~~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAPR--------------------------------------KKGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSCS--------------------------------------CCBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCCCC--------------------------------------CCEeCCCCCcCCccCCCcC
Confidence 56999999999999997541 1139999999999999995
No 78
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.73 E-value=6.8e-09 Score=75.73 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|++.||++++|+.....+ .....||+|+++||+|+|||+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~---------------------------------~~~~~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSG---------------------------------NSRERCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSS---------------------------------CCCSBCTTTCCBSSCGGGCCC
T ss_pred CcccccCCCCeehhhCcCCcCCC---------------------------------CCCCeeCCCCCCCCCcCCCcC
Confidence 56999999999999998652110 012349999999999999995
No 79
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.73 E-value=3.5e-09 Score=62.90 Aligned_cols=18 Identities=44% Similarity=1.198 Sum_probs=16.4
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||++||||||||+
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 459999999999999995
No 80
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.71 E-value=1.6e-08 Score=76.37 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||++++|+.... ...||+||++||+|+|||+
T Consensus 25 ~~C~~Cg~~GH~a~~C~~~~~-------------------------------------~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKLPPQ-------------------------------------PKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp SCCTTTCCSSSCTTTCSSCCC-------------------------------------CCCCTTTCCTTSCGGGCTT
T ss_pred CcccccCCcCcCcccCCCCCC-------------------------------------CCccCCcCCcCCccCcCcC
Confidence 569999999999999975310 1239999999999999995
No 81
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.5e-09 Score=80.29 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
-.|++|++.||.+++||.. ..+|.|+.. +|.+.... .......||+||++||+++|||+
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~-----~rcY~c~~~-----gh~~~~c~--------~p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI-----WRAYILVDD-----NEKAKPKV--------LPFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG-----TCCCCBC--------------------------CCCBCSSSSCBSSCGGGCSS
T ss_pred CCCCCCCCCCCccccCCCc-----ccccccccC-----Cccccccc--------CCCCCCeecccCCCCcCcccCCc
Confidence 4599999999999999875 357777742 22210000 00123459999999999999995
No 82
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.68 E-value=8.6e-09 Score=67.39 Aligned_cols=19 Identities=37% Similarity=0.956 Sum_probs=17.1
Q ss_pred CCCcccCCCCCcccCCCCC
Q 011149 474 GGACFNCGKSGHRASECPN 492 (492)
Q Consensus 474 ~~~c~~cg~~gh~a~~cp~ 492 (492)
...||+|||.||||+|||+
T Consensus 10 ~~~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSS
T ss_pred CCeeeECCCCCcchhhCcC
Confidence 4569999999999999995
No 83
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=7.6e-08 Score=81.16 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CccC---CCCCCCCCCCCCCCCCCCcccCCCCCcccCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDD---DWLI---GGSRSSRSSSRDRSFGGACFNCGKSGHRASE 489 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~ 489 (492)
..|++|++.||.+++|+... .+..|++|+..++.... .|.. ....+....+..+..+..||+||+.||||+|
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~--~~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~d 120 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKW--KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDD 120 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCC--CCCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTT
T ss_pred ccccccCCCCCccccCcCcc--cCccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCccc
Confidence 35788888888888887652 12567777755433221 1100 0000000001112235679999999999999
Q ss_pred CCC
Q 011149 490 CPN 492 (492)
Q Consensus 490 cp~ 492 (492)
||+
T Consensus 121 Cp~ 123 (124)
T 2lli_A 121 CKE 123 (124)
T ss_dssp SCC
T ss_pred CcC
Confidence 996
No 84
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=98.58 E-value=2.6e-08 Score=86.28 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||.+++|+.... ...||+||++||+|+|||+
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~~-------------------------------------~~~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPPQ-------------------------------------PKKCHFCQSINHMVASCPL 137 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCCC-------------------------------------CCCCTTTCCSSCCGGGCTT
T ss_pred CcccEeCCccchhhhCCCCCC-------------------------------------CCcccccCCcCCEeccCcC
Confidence 569999999999999986411 1239999999999999995
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.51 E-value=4.1e-06 Score=91.05 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=112.9
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEE-EEEcCcccHHHH-HHHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
.+..||.|...+-..+.+.|--+. +.+. .+.+.....+. .+......|... +.++...+..+.++||+|.|.+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~V--v~IP---Tn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMDV--VVVP---TNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCCE--EECC---CSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHH
T ss_pred HheecCCCchHHHHHHHHHhCCCE--EEcC---CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHH
Confidence 577899999888777777775442 2221 22222222222 222334456554 4455556667899999999999
Q ss_pred HHHHHHHHHH----------------------------------------------------------------------
Q 011149 100 DADEVSLALT---------------------------------------------------------------------- 109 (492)
Q Consensus 100 ~~~~l~~~l~---------------------------------------------------------------------- 109 (492)
..+.|+..|.
T Consensus 455 ~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 534 (997)
T 2ipc_A 455 KSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAV 534 (997)
T ss_dssp HHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhh
Confidence 9999999988
Q ss_pred ------c-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc-------------------C------
Q 011149 110 ------S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------D------ 157 (492)
Q Consensus 110 ------~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v-------------------~------ 157 (492)
+ +++..+|...-...+-+.+-++=+.| .|-|||+.+.||.||.-= .
T Consensus 535 ~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~ 612 (997)
T 2ipc_A 535 HTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELF 612 (997)
T ss_dssp HHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHH
T ss_pred hhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccc
Confidence 1 24444555543333333333333434 489999999999998521 1
Q ss_pred -------------------------------------------------EEEecCCCCChhHHHHHhhhcccCCCCCeEE
Q 011149 158 -------------------------------------------------LIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188 (492)
Q Consensus 158 -------------------------------------------------~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i 188 (492)
|||-...+.|..-=.|-.||+||.|.+|.+.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 613 IKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred cccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 7999999999999999999999999999988
Q ss_pred EecChhh
Q 011149 189 LMFTSSQ 195 (492)
Q Consensus 189 ~l~~~~e 195 (492)
++++-.|
T Consensus 693 F~LSLeD 699 (997)
T 2ipc_A 693 FYVSFDD 699 (997)
T ss_dssp EEEESSS
T ss_pred EEEECCh
Confidence 8876544
No 86
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.47 E-value=8.1e-08 Score=67.78 Aligned_cols=19 Identities=37% Similarity=0.956 Sum_probs=17.0
Q ss_pred CCCcccCCCCCcccCCCCC
Q 011149 474 GGACFNCGKSGHRASECPN 492 (492)
Q Consensus 474 ~~~c~~cg~~gh~a~~cp~ 492 (492)
...||+|||.||||+|||+
T Consensus 23 ~~~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTT
T ss_pred CCcceeCCCCCcccccCcC
Confidence 4569999999999999995
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.45 E-value=9e-07 Score=93.70 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=49.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEE--ecccccccCCCCC----cCEEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 160 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV--aT~~~~~Gidi~~----v~~VI 160 (492)
.++.+|||++|...++.+++.|.. +. ..+++.. .+|++++++|+.+. .||+ +|..+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 357899999999999999988864 22 3455553 46889999999865 4665 8999999999997 88999
Q ss_pred ecCCCC
Q 011149 161 HYELPN 166 (492)
Q Consensus 161 ~~~~P~ 166 (492)
++++|.
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999984
No 88
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.29 E-value=1.7e-07 Score=57.12 Aligned_cols=18 Identities=50% Similarity=1.145 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..|||||++||+|+|||.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 459999999999999984
No 89
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=98.20 E-value=1.2e-06 Score=66.89 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred EEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 011149 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (492)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~ 354 (492)
+|++++.++ ++++.|.+|+++|+....+..++||+|.+++++ |||++|++.++++++.+..
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~----s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNA----SYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSC----EEEEECTTCHHHHHHHHTT
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCc----EEEEECHHHHHHHHHHhcc
Confidence 368888888 889999999999999999999999999999998 8999999999999998765
No 90
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.4e-06 Score=71.85 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=16.4
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|++.||+|+|||+
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CSSSSSCSSCCCTTTCCC
T ss_pred ccCCCCCcCCcchhhCCC
Confidence 569999999999999995
No 91
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.11 E-value=1.7e-06 Score=65.28 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=16.1
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||++||||+|||.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 349999999999999983
No 92
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=1.2e-06 Score=61.62 Aligned_cols=17 Identities=53% Similarity=1.316 Sum_probs=15.8
Q ss_pred CCcccCCCCCcccCCCC
Q 011149 475 GACFNCGKSGHRASECP 491 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp 491 (492)
..||+||++|||++|||
T Consensus 8 ~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp CCCTTTCCTTSCGGGCS
T ss_pred CccccCCCcCcccccCC
Confidence 34999999999999999
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.89 E-value=0.00012 Score=78.43 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=69.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--cccccCCCCC--cCEEEec
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHY 162 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidi~~--v~~VI~~ 162 (492)
.++.+|||+++....+++++.|. .+... ..-+++..++.+++++|+ ++-.||++|. .+.+|||+|+ ...||..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 36789999999999999988876 22222 444556678999999999 7778999985 9999999985 5689988
Q ss_pred CCCCCh-----------------------------hHHHHHhhhcccCCCCCeEEEecCh
Q 011149 163 ELPNDP-----------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 163 ~~P~~~-----------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
.+|... ....|-+||.=|.-..--++++++.
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 877421 1126888998886544334455544
No 94
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.74 E-value=9e-06 Score=53.26 Aligned_cols=17 Identities=59% Similarity=1.341 Sum_probs=15.7
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 49999999999999994
No 95
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.71 E-value=1.1e-05 Score=52.15 Aligned_cols=17 Identities=53% Similarity=1.339 Sum_probs=15.7
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 39999999999999995
No 96
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=3e-05 Score=56.55 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|+++||+|+|||.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 459999999999999993
No 97
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.61 E-value=2.6e-05 Score=53.80 Aligned_cols=18 Identities=50% Similarity=1.145 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||+|+|||+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 459999999999999984
No 98
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.59 E-value=3.9e-05 Score=72.50 Aligned_cols=62 Identities=34% Similarity=0.589 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE
Q 011149 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL 64 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~--~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 64 (492)
|++++|.+++..|+.. ++. +.|+++||||+|+.+.++++.++++|..|.+.. ......+|+|
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~q 251 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR--VGSTSDSIKQ 251 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC--CCCCcCCcee
Confidence 4578999999999995 454 789999999999999999999999998887642 2223344544
No 99
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.57 E-value=2.3e-05 Score=56.79 Aligned_cols=18 Identities=44% Similarity=1.376 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|+++||||+|||+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TBCSSSCCBTCCGGGCTT
T ss_pred CcccccCCCCeehhhCcC
Confidence 359999999999999995
No 100
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.53 E-value=1.8e-06 Score=88.83 Aligned_cols=248 Identities=16% Similarity=0.236 Sum_probs=132.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccc-cCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidi~~v 156 (492)
..++||.+||++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+ .+.+ -+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 35899999999999999988875 2568889999988776655543 578999997 2222 3567888
Q ss_pred CEEEecC----CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHH-------
Q 011149 157 DLIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDV------- 221 (492)
Q Consensus 157 ~~VI~~~----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~------- 221 (492)
++||.=. +-.....-+.++-..-.. .....+++++.+-...++.+..........+.+... ..+
T Consensus 205 ~~lVlDEah~~~~~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~ 283 (434)
T 2db3_A 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTM-RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV 283 (434)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHCTTS-CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEEC
T ss_pred CeEEEccHhhhhccCcHHHHHHHHHhcCC-CCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEe
Confidence 8887311 111222222222221111 234566666655444445554433322221111000 000
Q ss_pred -HHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC---------CCCCCCcccccCCCCeEEEEE
Q 011149 222 -LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF---------SRPPSSRSLINHEQGWVTLQL 291 (492)
Q Consensus 222 -~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~---------~~~~~~~~l~~~~~~~~~~~~ 291 (492)
.......+.+.+...... ...|..+.+ ..+.++..|... ++ ++..+...+..++.+...+++
T Consensus 284 ~~~~k~~~l~~~l~~~~~~-~lVF~~t~~------~a~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 355 (434)
T 2db3_A 284 NKYAKRSKLIEILSEQADG-TIVFVETKR------GADFLASFLSEK-EFPTTSIHGDRLQSQREQALRDFKNGSMKVLI 355 (434)
T ss_dssp CGGGHHHHHHHHHHHCCTT-EEEECSSHH------HHHHHHHHHHHT-TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEE
T ss_pred CcHHHHHHHHHHHHhCCCC-EEEEEeCcH------HHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 001122233333322222 222211110 011222222221 11 111111223345667788999
Q ss_pred eecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC--HHHHHHHHh
Q 011149 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP--EEIAKELLN 350 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~--~~~a~~~i~ 350 (492)
+++. +.+|+|..++..+|+++.|...++ |||+.+....+...+|++.. ...+..+.+
T Consensus 356 aT~v--~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~ 418 (434)
T 2db3_A 356 ATSV--ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK 418 (434)
T ss_dssp ECGG--GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHH
T ss_pred Echh--hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHH
Confidence 9997 789999999999999888765544 78888776666666777743 234444444
No 101
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.40 E-value=4.4e-05 Score=54.09 Aligned_cols=18 Identities=56% Similarity=1.184 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|++.||+|+|||.
T Consensus 13 ~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCC
Confidence 459999999999999984
No 102
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.35 E-value=0.00018 Score=74.58 Aligned_cols=242 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred eEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc-------ccCCCCCc
Q 011149 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-------RGLDIPNV 156 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~-------~Gidi~~v 156 (492)
++||.+||+..+.+++..+.. .+.+....++.... .......+|+|+|+-.- ..+++.++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 899999999999999777664 23444444443211 11123457999997322 35777889
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHH-----------
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE----------- 223 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~----------- 223 (492)
.+||.=..- .+...|..+.-+.-+.-.....+++++.+-...+..+.......+..+.+........
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 316 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 316 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC
Confidence 988831110 0001232222233333234456666655433334444444444433332222111111
Q ss_pred --HHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccc
Q 011149 224 --SSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 298 (492)
Q Consensus 224 --~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 298 (492)
.....+...+.......+..|..+ ++.+.+.+....+...+.|.. +++..+...+..+..+...++++++. .
T Consensus 317 ~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~-~~~~~R~~~~~~f~~g~~~iLv~T~~--~ 393 (479)
T 3fmp_B 317 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGE-MMVEQRAAVIERFREGKEKVLVTTNV--C 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCC-CCHHHHHHHHHHHHcCCCcEEEEccc--c
Confidence 111111111211112222333322 333333333333333444432 44444455566778888999999987 6
Q ss_pred cCCCChhHHHHHHhhhCCCCc----------CccccEEEeecCccceeEeecC
Q 011149 299 RGFMSARSVMGFLSDVYPTAA----------DEIGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 299 ~~~~~~~~i~~~i~~~~~~~~----------~~ig~i~~~~~~~~~gs~fdv~ 341 (492)
..|++..++..+|+.+.|... ..+||..+....+...++++-+
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp -----------------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 889999999999998887432 2378888876655445555544
No 103
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.25 E-value=0.0029 Score=61.43 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=84.1
Q ss_pred cccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc
Q 011149 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (492)
.+.|+.+|.++|..+. .+.++|||+...+..+.+..++. +.+...-+.|.....+ .+. .+....|.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCC
Confidence 4679999999998874 35699999999999999999988 4788888888754432 221 234556655566666
Q ss_pred ccCC-----CCCcCEEEecCCCCChhH-HHHHhhhcccCC----CCCeEEEecChhh
Q 011149 149 RGLD-----IPNVDLIIHYELPNDPET-FVHRSGRTGRAG----KEGTAILMFTSSQ 195 (492)
Q Consensus 149 ~Gid-----i~~v~~VI~~~~P~~~~~-y~qr~GR~gR~g----~~g~~i~l~~~~e 195 (492)
-|+| +...+.||.||.-|++.. .+|.+-|+.|.+ ++-.+|.|++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6675 678899999999999877 488777777752 4556777766543
No 104
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=97.24 E-value=0.00012 Score=63.15 Aligned_cols=19 Identities=47% Similarity=1.088 Sum_probs=16.8
Q ss_pred CCCcccCCCCCcccCCCCC
Q 011149 474 GGACFNCGKSGHRASECPN 492 (492)
Q Consensus 474 ~~~c~~cg~~gh~a~~cp~ 492 (492)
+..|||||+.||+|++||+
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 4459999999999999984
No 105
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.24 E-value=0.0011 Score=66.16 Aligned_cols=240 Identities=12% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~v 156 (492)
..++||.|||+..+.++++.+.+ .+.+..++|+.+..+....+. ..+|+|+|+-. ...+++..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 46899999999999999988764 367888999988776665554 35799999621 223556778
Q ss_pred CEEEecCC----CCC-hhHHHHHhhhcccCCCCCeEEEecChhhHHHH-HHHHHHhCCCceecCCCC---HHHHHH----
Q 011149 157 DLIIHYEL----PND-PETFVHRSGRTGRAGKEGTAILMFTSSQRRTV-RSLERDVGCKFEFVSPPV---VEDVLE---- 223 (492)
Q Consensus 157 ~~VI~~~~----P~~-~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~-~~l~~~~~~~~~~~~~p~---~~~~~~---- 223 (492)
++||.=.. .++ ...+.+..... .....+++++.+-...+ +.+...+........... ...+..
T Consensus 164 ~~vIiDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 1fuu_A 164 KMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVN 239 (394)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------
T ss_pred cEEEEEChHHhhCCCcHHHHHHHHHhC----CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEE
Confidence 88773211 111 11222222111 23344555554432233 233333332221110000 000000
Q ss_pred -----HHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecC
Q 011149 224 -----SSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295 (492)
Q Consensus 224 -----~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (492)
.....+...+.......+..|... ++.+.+.+....+.....|.. ++...+...+..++.+...++++++.
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~r~~~~~~f~~~~~~vlv~T~~ 318 (394)
T 1fuu_A 240 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD-LPQQERDTIMKEFRSGSSRILISTDL 318 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCC-CCHHHHHHHHHHHHCCCCcEEEECCh
Confidence 011111111111111222223222 333333333333323333321 33333334455567777889999886
Q ss_pred ccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee
Q 011149 296 AFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD 339 (492)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd 339 (492)
...|++..++..+|....+..... +||+.+....+...++++
T Consensus 319 --~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 364 (394)
T 1fuu_A 319 --LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 364 (394)
T ss_dssp ------------------------------------------------
T ss_pred --hhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEc
Confidence 577999999988888876654433 788777644433334443
No 106
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=97.08 E-value=0.0011 Score=49.66 Aligned_cols=77 Identities=25% Similarity=0.337 Sum_probs=59.4
Q ss_pred CCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 011149 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (492)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~ 354 (492)
.++||+++++||+|+.+.-. .++..-++.+|..... +||+|..... ++++|++.+... .-
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~------rLS~~R~VAlLk~aG~----~iGkI~~~~~----gayaDlr~e~l~------~~ 61 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGP------RLSLPRLVALLKGQGL----EVGKVAEAEG----GFYVDLRPEARP------EV 61 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECT------TCCHHHHHHHHHHTTC----CEEEEEEETT----EEEEEECTTCCC------CC
T ss_pred CcccccccCcceEEEEEecc------cccHHHHHHHHHHccc----ccccEEeccc----eeEEecChHHcc------cc
Confidence 46899999999999999643 4899999999987654 8999997544 599999988765 22
Q ss_pred CCCceeeeccCCCCCCC
Q 011149 355 PGNTISKITKLPALQDD 371 (492)
Q Consensus 355 ~~i~~~~~~~lp~~~~~ 371 (492)
.++.++....++.+.+.
T Consensus 62 ~~~~~e~A~~v~~~~E~ 78 (88)
T 3i31_A 62 AGLRLEPARRVEGLLEI 78 (88)
T ss_dssp TTCEEEECCSCCCCC--
T ss_pred ccceehhhhhccccccC
Confidence 57788887777777654
No 107
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.05 E-value=0.0047 Score=65.23 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=53.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec--ccccccCCCC-----CcCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT--~~~~~Gidi~-----~v~~V 159 (492)
.++.+|||+++....+++++.+ ...+..-.-+++. .++++.|+...-.||++| ..+.+|||+| .+..|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 3579999999999999998732 2233322234553 456677743334799998 6999999999 46789
Q ss_pred EecCCCC
Q 011149 160 IHYELPN 166 (492)
Q Consensus 160 I~~~~P~ 166 (492)
|...+|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 9888775
No 108
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.74 E-value=0.00013 Score=77.79 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=53.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhh--cCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F--~~g~~~iLVaT~ 145 (492)
....+||.+|++..+++.+..|.. ++.+..++++++..++..++..+ ..+..+|||+|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467999999999999999999886 78899999999999999998888 567899999998
No 109
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.69 E-value=3.1e-05 Score=82.64 Aligned_cols=243 Identities=15% Similarity=0.139 Sum_probs=120.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc---------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-----cc--cCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~---------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~--Gid 152 (492)
.++||.+||++.+.++++.+... +.+..++++....... +.+.....+|||+|+-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHH---HHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999999888752 3466677776654433 33433467899999721 11 345
Q ss_pred CCCcCEEEec------CCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec-----------
Q 011149 153 IPNVDLIIHY------ELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV----------- 213 (492)
Q Consensus 153 i~~v~~VI~~------~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~----------- 213 (492)
+..+++||.= +.. .+.......+-+..........+++++.+-...++.+..........+
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 6778887731 111 112222222222222222345566666553333343333322221110
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHhcc-CCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc--CC---------C
Q 011149 214 ----------SPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS--GF---------S 271 (492)
Q Consensus 214 ----------~~p~~~~~~~~~~~~~~~~l~~-~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~--~~---------~ 271 (492)
..+.........+..+...+.. ........|..+.+. .+.++..|.... ++ +
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~------~~~l~~~L~~~~~~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF------TSFLCSILKNEFKKDLPILEFHGKIT 326 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHH------HHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHH------HHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 0011112222233333333332 111122222221110 122222332221 11 1
Q ss_pred CCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH
Q 011149 272 RPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE 342 (492)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~ 342 (492)
+..+.+.+..++.+...++++++. +..|+|..++..+|....|..... +||+.+....+...+++.-.+
T Consensus 327 ~~~R~~~~~~F~~g~~~vLVaT~~--~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 327 QNKRTSLVKRFKKDESGILVCTDV--GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGG--GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred HHHHHHHHHHhhcCCCeEEEEcch--hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccH
Confidence 101111223345677889999987 688999998888888888766554 677766654444445555443
No 110
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.65 E-value=0.00024 Score=74.74 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=60.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc------ccCCCCCcCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~------~Gidi~~v~~V 159 (492)
....+||.+|++..+++....|.. .+.+..+|+..+..++..++..+..+..+|||+|+--- .-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 457899999999999999999886 68899999999999999999999999999999997311 22334566666
Q ss_pred E
Q 011149 160 I 160 (492)
Q Consensus 160 I 160 (492)
|
T Consensus 144 V 144 (523)
T 1oyw_A 144 A 144 (523)
T ss_dssp E
T ss_pred E
Confidence 6
No 111
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.46 E-value=5.2e-05 Score=80.44 Aligned_cols=244 Identities=16% Similarity=0.130 Sum_probs=120.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc---------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-----cc--cCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~---------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~--Gid 152 (492)
.++||.+||++.+.++++.+... +.+..++++....... +.+.....+|||+|+-. .+ ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH---HHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 38999999999999999888752 3466677776654433 33333467899999732 11 234
Q ss_pred CCCcCEEEecC----CCC----ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec-----------
Q 011149 153 IPNVDLIIHYE----LPN----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV----------- 213 (492)
Q Consensus 153 i~~v~~VI~~~----~P~----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~----------- 213 (492)
+..+++||.=. +-+ +...+...+-+..........+++++.+-...++.+..........+
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 67788877311 111 12222222222222222345566665543333333333322221110
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHhccC-CccchhhhHHHHHHHHhhhCHHHHHHHHHHHc--CC---------C
Q 011149 214 ----------SPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALAAALAQLS--GF---------S 271 (492)
Q Consensus 214 ----------~~p~~~~~~~~~~~~~~~~l~~~-~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~--~~---------~ 271 (492)
..+............+...+... .......|..+.+ ..+.++..|.... ++ +
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~------~~~~l~~~L~~~~~~~~~v~~~h~~~~ 377 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK------FTSFLCSILKNEFKKDLPILEFHGKIT 377 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHH------HHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHH------HHHHHHHHHHHhccCCceEEEecCCCC
Confidence 00111122222233333333221 1112222211110 0112222222221 11 1
Q ss_pred CCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 272 RPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
+..+.+.+..+..+...++++++. ...|+|..++..+|+...|..... +||..+....+...+++.-.+.
T Consensus 378 ~~~R~~~~~~f~~g~~~vLvaT~~--~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 378 QNKRTSLVKRFKKDESGILVCTDV--GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGG--GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred HHHHHHHHHHHhcCCCCEEEEcch--hhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 101111223445677889999987 688999998888888888766654 7887776544444456655443
No 112
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.40 E-value=0.028 Score=58.67 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=50.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cccc-C-CCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G-i-di~~ 155 (492)
..++||.|||+..+.+++..+.. .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 57899999999999999888874 4678999999866554333322 4679999972 1222 3 5667
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888773
No 113
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.30 E-value=0.0002 Score=72.37 Aligned_cols=241 Identities=11% Similarity=0.099 Sum_probs=111.7
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc-cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidi~~ 155 (492)
...++||.+||+..+.++++.+... +.+..++++...... ++.+..+..+|+|+|+ .+ ...+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3568999999999999999988752 456667777655443 3444556778999996 22 23356677
Q ss_pred cCEEEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HH-------
Q 011149 156 VDLIIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----ED------- 220 (492)
Q Consensus 156 v~~VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~------- 220 (492)
+++||.=.. .++....+..+ -+.-.....+++++.+-...+..+.+........+..... ..
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDI---FQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHH---HTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEE
T ss_pred CcEEEEECHHHhhccCcHHHHHHH---HHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEE
Confidence 887773211 01111111111 1111234556666655333333332222222211111000 00
Q ss_pred --HHHHHHHHHHHHhccCCccchhhhH---HHHHHHHhhhCHHHHHHHHHHHcCCCC---------CCCCcccccCCCCe
Q 011149 221 --VLESSAEQVVATLNGVHPESVEFFT---PTAQRLIEEKGTDALAAALAQLSGFSR---------PPSSRSLINHEQGW 286 (492)
Q Consensus 221 --~~~~~~~~~~~~l~~~~~~~~~~f~---~~a~~l~~~~~~~~l~~al~~~~~~~~---------~~~~~~l~~~~~~~ 286 (492)
..+.....+...+.......+..|. ..++.+. ..|.. .++.. ..+...+..++.+.
T Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~---------~~l~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 330 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLT---------EKMHA-RDFTVSAMHGDMDQKERDVIMREFRSGS 330 (414)
T ss_dssp CSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHH---------HHHHT-TTCCCEEC---CHHHHHHHHHHHHSCC-
T ss_pred eChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH---------HHHHh-cCCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 0011222333333333222222222 1122221 11111 11110 00111123455677
Q ss_pred EEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHH
Q 011149 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIA 345 (492)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a 345 (492)
..++++++. ...|++..++..+|....+..... +||..+....+...++++-.+...
T Consensus 331 ~~vlv~T~~--~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 331 SRVLITTDL--LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp --CEEECSS--CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred CcEEEECCc--cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 889999987 678999988888888777655443 788877655444455665554433
No 114
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.22 E-value=0.00043 Score=69.30 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=53.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~ 155 (492)
..++||.|||+..++++++.+.+ .+.+..++|+.+..+....+. .+..+|+|+|+-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999999888764 367888999988776655443 3556899999721 23456778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888874
No 115
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.19 E-value=0.059 Score=56.26 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-----ccc-C-CCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~G-i-di~~ 155 (492)
..++||.+||+..+.++++.+.. .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999999888875 4778899999876654433332 46799999722 222 3 6778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888773
No 116
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.15 E-value=0.013 Score=64.19 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=71.0
Q ss_pred cHHH-HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 73 SKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 73 ~k~~-~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
-|.. .+..++..+..+.++||.+||+..|.++++.+.+ .+.+..+||+++..++..+++.+.+|..+|+|+|..
T Consensus 401 GKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 480 (780)
T 1gm5_A 401 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 480 (780)
T ss_dssp SHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4433 3333444444568999999999999999988874 367899999999999999999999999999999974
Q ss_pred -ccccCCCCCcCEEEe
Q 011149 147 -AARGLDIPNVDLIIH 161 (492)
Q Consensus 147 -~~~Gidi~~v~~VI~ 161 (492)
+...+++.++.+||.
T Consensus 481 ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 481 LIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHHHCCCCSCCCEEEE
T ss_pred HHhhhhhccCCceEEe
Confidence 344578889998884
No 117
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.13 E-value=0.00011 Score=74.33 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=51.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----c-cccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidi~~v~ 157 (492)
.++||.+||++.+.++++.+.+ .+.+..+||+.+..+....+.. ..+|+|+|+- + ...+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999999998874 3678889999887766554432 5689999972 1 2235677888
Q ss_pred EEEe
Q 011149 158 LIIH 161 (492)
Q Consensus 158 ~VI~ 161 (492)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8773
No 118
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.94 E-value=0.016 Score=58.41 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=64.8
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc----ccCCC
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA----RGLDI 153 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~----~Gidi 153 (492)
+.......++||.+||++.+.++++.+.. .+.+..+||+++..++...++.+..+..+|+|+|+-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33334667999999999999999999986 56899999999999998888999888899999997321 12566
Q ss_pred CCcCEEEe
Q 011149 154 PNVDLIIH 161 (492)
Q Consensus 154 ~~v~~VI~ 161 (492)
.++++||.
T Consensus 138 ~~~~~iVi 145 (414)
T 3oiy_A 138 KRFDFVFV 145 (414)
T ss_dssp CCCSEEEE
T ss_pred ccccEEEE
Confidence 68888874
No 119
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=95.90 E-value=0.0042 Score=36.35 Aligned_cols=20 Identities=10% Similarity=-0.084 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGG 435 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (492)
..||+||+.||++++|+...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 56999999999999998763
No 120
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.89 E-value=0.0011 Score=66.91 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccc-ccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~-~Gidi~~ 155 (492)
...++||.+||++.+.++++.+.. .+.+..++|+....+....+.. ..+|+|+|+ .+. ..+++..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 356899999999999999998874 2567788898887766555543 457999996 222 3466777
Q ss_pred cCEEE
Q 011149 156 VDLII 160 (492)
Q Consensus 156 v~~VI 160 (492)
+++||
T Consensus 180 ~~~vV 184 (410)
T 2j0s_A 180 IKMLV 184 (410)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 88877
No 121
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.72 E-value=0.002 Score=64.60 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----c-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidi~~v 156 (492)
..++||.+||+..++++++.+.. .+.+..++|+.........+ ....+|+|+|+- + ....++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh----cCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 45899999999999999988874 35678889988765543332 236789999962 2 233567788
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88874
No 122
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.46 E-value=0.087 Score=48.80 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=75.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidi~~v 156 (492)
..++||.+||++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+ .+ ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999999888764 4678889999988877666654 578999997 22 224577888
Q ss_pred CEEEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 157 DLIIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 157 ~~VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
.+||.=+. .+.....+..+-+.- .+...+++++.+-...++.+.+.+..++..+.
T Consensus 178 ~~lViDEah~l~~~~~~~~~~~i~~~~---~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~ 236 (242)
T 3fe2_A 178 TYLVLDEADRMLDMGFEPQIRKIVDQI---RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 236 (242)
T ss_dssp CEEEETTHHHHHHTTCHHHHHHHHTTS---CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred cEEEEeCHHHHhhhCcHHHHHHHHHhC---CccceEEEEEeecCHHHHHHHHHHCCCCEEEE
Confidence 88874221 111122222222211 23456667666655555666555554554443
No 123
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.15 E-value=0.00097 Score=65.85 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=50.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~v 156 (492)
..++||.+|++..++++++.+.. .+.+..++++.........+. ..+|+|+|+-. ...+++.++
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~ 148 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNV 148 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccccC
Confidence 56899999999999999998875 356778888887665544443 46799999721 223567788
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 149 ~~iIi 153 (367)
T 1hv8_A 149 KYFIL 153 (367)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
No 124
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.90 E-value=0.14 Score=47.59 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=71.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v~ 157 (492)
.++||.+||++.+.++++.+.. .+.+..++|+.+..+....+. ...+|+|+|+- ....+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 4899999999999999988874 256778898887665544442 25789999972 12235777888
Q ss_pred EEEecCC----CCC-hhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011149 158 LIIHYEL----PND-PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 158 ~VI~~~~----P~~-~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (492)
+||.=.. .+. ...+.....+..........+++++.+-...++.+.+.+...+..+.+
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 8773111 011 122222222211111124456666655444555565555445544433
No 125
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.88 E-value=0.038 Score=63.01 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=68.4
Q ss_pred cHHHHH-HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-
Q 011149 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV- 146 (492)
Q Consensus 73 ~k~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~- 146 (492)
-|.... ..++.......++||.+||++.|.++++.+.. .+.+..+||+++..++...++.+.++..+|||+|+-
T Consensus 105 GKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~r 184 (1104)
T 4ddu_A 105 GKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 184 (1104)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHH
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHH
Confidence 454432 33344445667899999999999999999987 357899999999988888999999998999999972
Q ss_pred ----ccccCCCCCcCEEEe
Q 011149 147 ----AARGLDIPNVDLIIH 161 (492)
Q Consensus 147 ----~~~Gidi~~v~~VI~ 161 (492)
+.. +++.++++||.
T Consensus 185 L~~~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 185 VSKNREK-LSQKRFDFVFV 202 (1104)
T ss_dssp HHHSHHH-HHTSCCSEEEE
T ss_pred HHHHHHh-hcccCcCEEEE
Confidence 222 55678888884
No 126
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=94.85 E-value=0.014 Score=37.90 Aligned_cols=20 Identities=0% Similarity=-0.170 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGG 435 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (492)
..||+||+.|||+++|+...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 67999999999999999763
No 127
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.23 E-value=0.071 Score=48.43 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=52.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v 156 (492)
.++||.+||++.++++++.+.+ .+.+..++|+.+..++...+. ++..+|+|+|+- ....+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999999888764 367888999988776655443 345689999972 1234667788
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 128
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.18 E-value=0.16 Score=46.39 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=48.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
...++||.+||++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+ .....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 356799999999999999998875 3678888888766654444432 478999997 22335667888
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88774
No 129
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.17 E-value=0.19 Score=46.84 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=70.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cc--ccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~--~Gidi~~ 155 (492)
..++||.+||++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+- +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK----KPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT----CCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCcCccc
Confidence 35799999999999999988764 3678889999887665554432 6789999962 11 4567788
Q ss_pred cCEEEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 156 VDLIIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 156 v~~VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
+++||.=+. -.+....+.++-+.- .....+++++.+-...++.+.+.+..++..
T Consensus 187 ~~~lViDEah~l~~~~~~~~l~~i~~~~---~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 187 LKYLVMDEADRILNMDFETEVDKILKVI---PRDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHSS---CSSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred cCEEEEcChhhhhccChHHHHHHHHHhC---CCCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 888774221 011112222232221 223455666555444455555554444433
No 130
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.12 E-value=0.12 Score=46.30 Aligned_cols=117 Identities=20% Similarity=0.130 Sum_probs=69.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCcCE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVDL 158 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v~~ 158 (492)
..++||.+||++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+- ....+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 46799999999999999999885 3578889998876555444433 5679999961 123466778888
Q ss_pred EEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCce
Q 011149 159 IIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 159 VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (492)
||.=+. ..+....+..+=+ .-.....+++++.+-...++.+.+.+..++.
T Consensus 148 iViDEah~~~~~~~~~~~~~i~~---~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 201 (207)
T 2gxq_A 148 AVLDEADEMLSMGFEEEVEALLS---ATPPSRQTLLFSATLPSWAKRLAERYMKNPV 201 (207)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHH---TSCTTSEEEEECSSCCHHHHHHHHHHCSSCE
T ss_pred EEEEChhHhhccchHHHHHHHHH---hCCccCeEEEEEEecCHHHHHHHHHHcCCCe
Confidence 774211 1111222222211 1123455666665544445555554443433
No 131
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.85 E-value=0.14 Score=58.67 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=66.6
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-cccccCCCCC
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGLDIPN 155 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~~Gidi~~ 155 (492)
+.....+.+++|.|||+..+.+.++.+.+. +.+..+++..+..++..+++.+.+|..+|+|+|. .+...+.+.+
T Consensus 646 ~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 646 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp HHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred HHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 333445679999999999999999988742 5678899999999999999999999999999995 4555678888
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+.+||.
T Consensus 726 l~lvIi 731 (1151)
T 2eyq_A 726 LGLLIV 731 (1151)
T ss_dssp EEEEEE
T ss_pred cceEEE
Confidence 888873
No 132
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.79 E-value=0.0016 Score=65.50 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=50.6
Q ss_pred ccHHHH-HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 72 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.-|..+ +..++..+. ...++||.+||+..+.++++.+.+ .+.+...+++.... .......+|+
T Consensus 75 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv 147 (412)
T 3fht_A 75 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIV 147 (412)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCCCCSEE
T ss_pred chHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcCCCCEE
Confidence 345443 333444432 234899999999999999887764 24455555553321 1123356799
Q ss_pred Eecccc-------cccCCCCCcCEEEe
Q 011149 142 VATDVA-------ARGLDIPNVDLIIH 161 (492)
Q Consensus 142 VaT~~~-------~~Gidi~~v~~VI~ 161 (492)
|+|+-. ...+++.++++||.
T Consensus 148 v~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 148 IGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EECchHHHHHHHhcCCcChhhCcEEEE
Confidence 999722 13456678888773
No 133
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.23 E-value=0.1 Score=47.91 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=58.4
Q ss_pred ccHHHH-HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 72 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.-|... +..++..+. ...++||.+||++.++++++.+.. .+.+..++|+.+..++...++ ..+|+
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Ii 146 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIA 146 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEE
Confidence 456543 333444331 246899999999999999998874 356788999988777655543 46899
Q ss_pred Eecccc------cccCCCCCcCEEEe
Q 011149 142 VATDVA------ARGLDIPNVDLIIH 161 (492)
Q Consensus 142 VaT~~~------~~Gidi~~v~~VI~ 161 (492)
|+|+-. ...+++.++++||.
T Consensus 147 v~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 147 VGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp EECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred EECHHHHHHHHhcCCcccccCCEEEe
Confidence 999721 23456777887773
No 134
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.17 E-value=0.031 Score=42.76 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=2.5
Q ss_pred cccCCCCCcccCCC
Q 011149 477 CFNCGKSGHRASEC 490 (492)
Q Consensus 477 c~~cg~~gh~a~~c 490 (492)
||+|+++||+++||
T Consensus 27 cY~c~~~gh~~~~c 40 (83)
T 3nyb_B 27 AYILVDDNEKAKPK 40 (83)
T ss_dssp CCCBC---------
T ss_pred ccccccCCcccccc
Confidence 45555555554444
No 135
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=93.10 E-value=0.094 Score=36.70 Aligned_cols=20 Identities=0% Similarity=-0.170 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGG 435 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (492)
..|++||+.|||+++|+...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 67999999999999999763
No 136
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=92.95 E-value=0.014 Score=60.91 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=39.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHccc-----ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSII-----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~~-----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~v~ 157 (492)
.++||.+|++..+.++++.+.... .+....++. .... .....+|+|+|+-. ...+++.+++
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~ 261 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS---VPKG-----AKIDAQIVIGTPGTVMDLMKRRQLDARDIK 261 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCc---cccc-----ccCCCCEEEECHHHHHHHHHcCCccccCCC
Confidence 489999999999999999988632 222222221 1111 12256899999632 2345778888
Q ss_pred EEEe
Q 011149 158 LIIH 161 (492)
Q Consensus 158 ~VI~ 161 (492)
+||.
T Consensus 262 lIIi 265 (508)
T 3fho_A 262 VFVL 265 (508)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8873
No 137
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.86 E-value=0.43 Score=43.68 Aligned_cols=70 Identities=11% Similarity=0.240 Sum_probs=49.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----ccc--cCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR--GLDIP 154 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~--Gidi~ 154 (492)
...++||.+||++.+.++++.+... +.+..++|+.+.......+ ...+|+|+|+- +.+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999999988752 6788889987665544433 25689999972 122 35667
Q ss_pred CcCEEEe
Q 011149 155 NVDLIIH 161 (492)
Q Consensus 155 ~v~~VI~ 161 (492)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 8887774
No 138
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.61 E-value=0.0031 Score=62.84 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=45.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~ 155 (492)
...++||.+||+..+.++++.+.+. +.+..++++... .......+|+|+|+-. ...+++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE--------KNKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC--------TTSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchh--------hhccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 3468999999999999999988752 345556655321 1122356799999732 33456788
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
No 139
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.51 E-value=0.31 Score=43.42 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=50.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cc-ccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~-~Gidi~~ 155 (492)
..++||.+||++.++++++.+.. .+.+..++|+.+..+....+. ...+|+|+|+- +. .-+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 35799999999999999988864 356788899987765544332 36789999972 22 2346778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
No 140
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=92.26 E-value=0.49 Score=43.42 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=44.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccc-ccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~-~Gidi~~v 156 (492)
..++||.+||++.+.++++.+.. .+.+..++|+..... ..+.+..+..+|+|+|+ .+. ..+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 46899999999999999998874 245667787754433 23445556678999995 222 33667778
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 141
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.84 E-value=0.87 Score=41.06 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=51.0
Q ss_pred ccHHHH-HHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 72 TSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
.-|..+ +..++..+ ....++||.+||+..+.++++.+.. .+.+..++|+.+..++...+ . ..+|+|
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv 136 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVV 136 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEE
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEE
Confidence 356544 33344433 2345899999999999999988764 35678889987665544333 2 267999
Q ss_pred eccc------ccccCCCCCcCEEEe
Q 011149 143 ATDV------AARGLDIPNVDLIIH 161 (492)
Q Consensus 143 aT~~------~~~Gidi~~v~~VI~ 161 (492)
+|+- ....+++..+++||.
T Consensus 137 ~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 137 GTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEEE
Confidence 9972 233566777888773
No 142
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=91.67 E-value=0.068 Score=31.98 Aligned_cols=19 Identities=5% Similarity=0.027 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRG 434 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~ 434 (492)
-.|++||..||.+++|+.+
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4599999999999999865
No 143
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=91.44 E-value=0.37 Score=54.69 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=57.9
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-----cc----ceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-ccccCC-C
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD-I 153 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~Gid-i 153 (492)
.....++||.+||++.|.++++.+.. .+ .+..+||+++..++.+.++.+++ .+|+|+|+- +..-+. +
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 34567899999999999999998874 24 68899999999998888888887 889999972 111111 5
Q ss_pred CCcCEEEe
Q 011149 154 PNVDLIIH 161 (492)
Q Consensus 154 ~~v~~VI~ 161 (492)
..+++||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 57888773
No 144
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.23 E-value=0.87 Score=42.57 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=52.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccc--ccCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA--RGLDIP 154 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~--~Gidi~ 154 (492)
...++||.+||++.++++++.+.+ .+.+..++|+.........+.. ..+|+|+|+ .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999999998875 2456778888877665544433 378999995 222 246778
Q ss_pred CcCEEEe
Q 011149 155 NVDLIIH 161 (492)
Q Consensus 155 ~v~~VI~ 161 (492)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888774
No 145
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.87 E-value=0.16 Score=35.33 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSR 433 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~ 433 (492)
..|++||+.||+.++|+.
T Consensus 8 ~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp CCCTTTCCTTSCGGGCSG
T ss_pred CccccCCCcCcccccCCC
Confidence 569999999999999983
No 146
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=89.28 E-value=0.062 Score=46.94 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccc
Q 011149 259 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQ 334 (492)
Q Consensus 259 ~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~ 334 (492)
.+.....|.. +++..+...+..++.+...++++++. ...|++..++..+|+.+.|..... +||+......+..
T Consensus 54 ~~~~~~~~g~-~~~~~r~~~~~~f~~g~~~vLvaT~~--~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~ 130 (170)
T 2yjt_D 54 GINNCYLEGE-MVQGKRNEAIKRLTEGRVNVLVATDV--AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTA 130 (170)
Confidence 3333333432 34444445566777888889999987 688999999999999887755443 7887776544433
Q ss_pred eeEeec
Q 011149 335 GAVFDL 340 (492)
Q Consensus 335 gs~fdv 340 (492)
.++++.
T Consensus 131 ~~~~~~ 136 (170)
T 2yjt_D 131 ISLVEA 136 (170)
Confidence 344443
No 147
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=89.32 E-value=0.59 Score=42.98 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=54.2
Q ss_pred ccHHHH-HHHHHHHHc----cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 72 TSKRTI-LSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~----~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.-|..+ +..++..+. ...++||.+||++.+.++++.+.+ .+.+..++++.. .............+|+
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 77 SGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAV---AAKKFGPKSSKKFDIL 153 (245)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHH---HHTTTSTTSCCCCCEE
T ss_pred CcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCcc---HHHHhhhhhcCCCCEE
Confidence 345433 333444442 234799999999999999998875 245666665422 1112223345577899
Q ss_pred Eeccc-----ccc---cCCCCCcCEEEe
Q 011149 142 VATDV-----AAR---GLDIPNVDLIIH 161 (492)
Q Consensus 142 VaT~~-----~~~---Gidi~~v~~VI~ 161 (492)
|+|+- +.. .+++.++.+||.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 99962 212 477888888874
No 148
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.94 E-value=0.49 Score=45.38 Aligned_cols=132 Identities=10% Similarity=0.071 Sum_probs=74.1
Q ss_pred ccHHHH-HHHHHHHHcc---CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 72 TSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~~---~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.-|..+ +..++..+.. ..++||.+||++.|.+++..+.. .+.+..++++...... .....+||
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Il 214 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIV 214 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEE
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEE
Confidence 345433 3344444322 23799999999999999887764 2456666766543211 12356799
Q ss_pred Eecccc------c-ccCCCCCcCEEEecCCC-----CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 142 VATDVA------A-RGLDIPNVDLIIHYELP-----NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 142 VaT~~~------~-~Gidi~~v~~VI~~~~P-----~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
|+|+-. . ..+++..+.+||.=..- ......+.++-+ .-.....+++++.+-...+..+.+.+..+
T Consensus 215 V~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~---~~~~~~q~i~~SAT~~~~v~~~a~~~l~~ 291 (300)
T 3fmo_B 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQR---MLPRNCQMLLFSATFEDSVWKFAQKVVPD 291 (300)
T ss_dssp EECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHT---TSCTTCEEEEEESCCCHHHHHHHHHHSSS
T ss_pred EECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHH---hCCCCCEEEEEeccCCHHHHHHHHHHCCC
Confidence 999732 1 35778889988842210 112222223322 22334567777766555566666555544
Q ss_pred ceec
Q 011149 210 FEFV 213 (492)
Q Consensus 210 ~~~~ 213 (492)
+..+
T Consensus 292 p~~i 295 (300)
T 3fmo_B 292 PNVI 295 (300)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 4433
No 149
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=88.58 E-value=0.11 Score=29.68 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=15.0
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
|-.|..-|||+.||+.
T Consensus 6 Ce~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 6 CEICEMFGHWATNCND 21 (26)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred chHHHHhCcccccCCc
Confidence 9999999999999974
No 150
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=87.02 E-value=0.58 Score=42.24 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=47.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cc-ccCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLD 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~-~Gid 152 (492)
..++||.+||++.+.++++.+.+ .+.+..++|+.+..+. .+.+. ...+|+|+|+- +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CCCCEEEeCHHHHHHHHHcCCCC
Confidence 45899999999999999887764 2456778888654332 22232 35679999962 22 2355
Q ss_pred CCCcCEEEe
Q 011149 153 IPNVDLIIH 161 (492)
Q Consensus 153 i~~v~~VI~ 161 (492)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777663
No 151
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=86.56 E-value=1.2 Score=48.91 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=47.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----ccc-cC-CCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GL-DIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gi-di~~ 155 (492)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +.. -+ .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999999998888764 4788999999876654443332 5679999962 122 23 5667
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788873
No 152
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=86.51 E-value=2.2 Score=42.81 Aligned_cols=70 Identities=26% Similarity=0.388 Sum_probs=53.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc--c---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~--~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~ 155 (492)
...++||.||++..+.+.++.+.+. + .+..+||+....++..... ..+|+|+|.-. ..-+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999999999998863 3 7889999998887665543 35799999621 12456778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888873
No 153
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=85.81 E-value=0.63 Score=32.92 Aligned_cols=20 Identities=0% Similarity=-0.250 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGG 435 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (492)
..|++||+.||++++|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 67999999999999998763
No 154
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=84.76 E-value=2.8 Score=39.96 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=51.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~ 155 (492)
...++||.+|++..++++++.+.+ .+.+..+|++.+..++...+. ..+|+|+|+-. ..-+++..
T Consensus 55 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 129 (337)
T 2z0m_A 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATPGRLLDLWSKGVIDLSS 129 (337)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECHHHHHHHHHTTSCCGGG
T ss_pred hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 367999999999999999998874 257888999988776554433 26799999621 22346677
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 130 ~~~iVi 135 (337)
T 2z0m_A 130 FEIVII 135 (337)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 787773
No 155
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=80.49 E-value=0.33 Score=47.95 Aligned_cols=10 Identities=10% Similarity=0.032 Sum_probs=5.0
Q ss_pred CHHHHHHHHH
Q 011149 256 GTDALAAALA 265 (492)
Q Consensus 256 ~~~~l~~al~ 265 (492)
.+..||+|.+
T Consensus 192 ~Ps~IAaAAI 201 (358)
T 2pk2_A 192 TPPVVACVCI 201 (358)
T ss_dssp CHHHHTTTTT
T ss_pred CHHHHHHHHH
Confidence 4555555433
No 156
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=79.27 E-value=1.7 Score=48.66 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=46.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----ccc-cC-CCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GL-DIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gi-di~~ 155 (492)
..++||.+||+..+.+++..+.. .+.+..+||+.+...+...+.. ..+|+|+|+- +.. -+ .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 56899999999999999888875 4788999999876654333322 4679999962 122 23 5667
Q ss_pred cCEEE
Q 011149 156 VDLII 160 (492)
Q Consensus 156 v~~VI 160 (492)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78877
No 157
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=78.96 E-value=1.6 Score=38.75 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCeEEEEeCChHHHHH-HHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 88 GGKTIVFTQTKRDADE-VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~-l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
..++||+|+++..+++ +.+.+.. .+.+..++|+.....+...+.. ..+|+|+|+
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK----SCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHH----HCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhcc----CCCEEEECH
Confidence 5789999999999888 5555553 4678888887543322222211 467999996
No 158
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=77.74 E-value=2.6 Score=45.12 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=49.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cccc-C-CCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G-i-di~~v 156 (492)
.++||.+||+..+.+.++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CCCEEEECHHHHHHHHhcCcccccccc
Confidence 6899999999999999888874 4678899998865433333222 4789999972 2222 3 56778
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88873
No 159
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=76.61 E-value=4.4 Score=44.22 Aligned_cols=68 Identities=9% Similarity=0.048 Sum_probs=51.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-c------------c
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-A------------A 148 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~------------~ 148 (492)
.+..++|.|+|+..|.++++.+.. ++.+.++.|+++.++|.... ..+|+|+|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 456899999999999999888764 47888999999987766543 3689999971 1 1
Q ss_pred ccCCCCCcCEEE
Q 011149 149 RGLDIPNVDLII 160 (492)
Q Consensus 149 ~Gidi~~v~~VI 160 (492)
.-+++..+.++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 235667777776
No 160
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=76.26 E-value=4.3 Score=44.28 Aligned_cols=68 Identities=7% Similarity=-0.041 Sum_probs=51.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------ccc-----
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARG----- 150 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~G----- 150 (492)
.+.+++|.|+|+..|.++++.+.. ++.+.++.|+++.+.|.... ..+|+|+|+-- ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 456899999999999999888764 47789999999987665443 36899999732 222
Q ss_pred --CCCCCcCEEE
Q 011149 151 --LDIPNVDLII 160 (492)
Q Consensus 151 --idi~~v~~VI 160 (492)
+....+.++|
T Consensus 188 ~~~~~~~l~~lV 199 (853)
T 2fsf_A 188 EERVQRKLHYAL 199 (853)
T ss_dssp GGCCCCSCCEEE
T ss_pred hHhcccCCcEEE
Confidence 4556777776
No 161
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=71.94 E-value=64 Score=32.32 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=32.4
Q ss_pred CeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeec----CccceeEeecC-HHHHHHHHhhcC
Q 011149 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIAD----DRVQGAVFDLP-EEIAKELLNKQI 353 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~----~~~~gs~fdv~-~~~a~~~i~~~~ 353 (492)
...+|+|..- ...++..+|..++..+..+ -.|.|..+ ....++||+.. .+.|..+++.+.
T Consensus 101 ~~~~lfV~nL----~~~~te~~L~~~F~~~G~I-----~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 101 AFKTLFVARV----NYDTTESKLRREFEVYGPI-----KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHHcCCe-----eEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 3467887543 2357889999988876543 34455422 01223555542 334455555444
No 162
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=71.64 E-value=7.2 Score=42.82 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=53.4
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------c-
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------A- 148 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~- 148 (492)
++..+ .+..++|.|+|+..|.+.++.+.. ++.+.++.|+++.++|.... ..+|+++|+-- .
T Consensus 146 ~l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD 218 (922)
T 1nkt_A 146 YLNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRD 218 (922)
T ss_dssp HHHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHH
T ss_pred HHHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHh
Confidence 34444 457899999999999999888764 47889999999987776554 35899999721 1
Q ss_pred ------ccCCCCCcCEEE
Q 011149 149 ------RGLDIPNVDLII 160 (492)
Q Consensus 149 ------~Gidi~~v~~VI 160 (492)
.-++...+.++|
T Consensus 219 ~m~~~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 219 NMAHSLDDLVQRGHHYAI 236 (922)
T ss_dssp TTCSSGGGCCCCCCCEEE
T ss_pred hhhccHhhhccCCCCEEE
Confidence 135566777766
No 163
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=71.28 E-value=1.7 Score=46.74 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=46.6
Q ss_pred CeEEEEeCChHHHHHH-HHHHHcc----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------------cccC
Q 011149 89 GKTIVFTQTKRDADEV-SLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------------ARGL 151 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l-~~~l~~~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------------~~Gi 151 (492)
.++||.+|++..+.+. ++.|... +.+..+||+.+..++...+. +..+|||+|+-. ...+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999999999 8888752 68999999976654433333 367899999721 2235
Q ss_pred CCCCcCEEE
Q 011149 152 DIPNVDLII 160 (492)
Q Consensus 152 di~~v~~VI 160 (492)
.+..+++||
T Consensus 133 ~~~~~~lvV 141 (699)
T 4gl2_A 133 QLSDFSLII 141 (699)
T ss_dssp CGGGCSEEE
T ss_pred ecccCcEEE
Confidence 677888887
No 164
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=70.51 E-value=4.7 Score=45.92 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=50.6
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-CCC
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDI 153 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi 153 (492)
++..+....++||.+||+..+.+.+..+.. .-.+..++|+++ .+...+|||+|+ .+.++ ..+
T Consensus 220 i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l 288 (1108)
T 3l9o_A 220 IAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM 288 (1108)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH
T ss_pred HHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc
Confidence 344445678999999999999999999986 346788999876 234678999995 33333 235
Q ss_pred CCcCEEE
Q 011149 154 PNVDLII 160 (492)
Q Consensus 154 ~~v~~VI 160 (492)
.++.+||
T Consensus 289 ~~l~lVV 295 (1108)
T 3l9o_A 289 REVAWVI 295 (1108)
T ss_dssp HHEEEEE
T ss_pred ccCCEEE
Confidence 6777777
No 165
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.32 E-value=4.5 Score=41.46 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=47.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-cccc--CCCCCcCEEE
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG--LDIPNVDLII 160 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~G--idi~~v~~VI 160 (492)
.++||.+||+..+++.++.+.+. ..+..+|++.+..++ ..+..+|+|+|.- +..- ..+.++.+||
T Consensus 158 ~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~liI 230 (510)
T 2oca_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMMM 230 (510)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEEE
T ss_pred CeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEEE
Confidence 49999999999999999999753 357888998766553 3457789999963 2222 3456677777
Q ss_pred e
Q 011149 161 H 161 (492)
Q Consensus 161 ~ 161 (492)
.
T Consensus 231 i 231 (510)
T 2oca_A 231 N 231 (510)
T ss_dssp E
T ss_pred E
Confidence 3
No 166
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=69.93 E-value=7.8 Score=42.65 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=44.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.+.+++|.++|+..|.+.++.+.. ++.+.++.|+++.++|.... ..+|+|+|+
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 456899999999999999888764 46788999999988777665 368999997
No 167
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=65.88 E-value=1.6 Score=27.94 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=15.0
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
|-+|.--|||+.+|+.
T Consensus 23 Cd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 23 CEICEMFGHWATNCND 38 (42)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred cccccccCcccccCCc
Confidence 9999999999999974
No 168
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=64.13 E-value=6.7 Score=42.15 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=52.5
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG 150 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G 150 (492)
.++..+..+.++|+.+|++..+.++++.++. ++.+..++|+....++ ..+..+|+|+|+ .+...
T Consensus 60 ~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~ 132 (702)
T 2p6r_A 60 AMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNR 132 (702)
T ss_dssp HHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTT
T ss_pred HHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcC
Confidence 3444444568999999999999999998853 4678889998755432 123678999997 22333
Q ss_pred CC-CCCcCEEEe
Q 011149 151 LD-IPNVDLIIH 161 (492)
Q Consensus 151 id-i~~v~~VI~ 161 (492)
.. +.++++||.
T Consensus 133 ~~~l~~~~~vIi 144 (702)
T 2p6r_A 133 ASWIKAVSCLVV 144 (702)
T ss_dssp CSGGGGCCEEEE
T ss_pred hhHHhhcCEEEE
Confidence 23 678888883
No 169
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=64.10 E-value=51 Score=28.12 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=45.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~ 164 (492)
...+.|.|++...+..+.+.|.. ++++..+..+-. .|. -.|.|.|-..+.|+-+ +.||.+++
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CCeEEEEccccCCcCC---CEEEEecC
Confidence 46788999999999999999986 577766665421 122 2588999999999976 55565554
No 170
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=64.04 E-value=6.3 Score=42.50 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=49.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccC-CCCCc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIPNV 156 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gi-di~~v 156 (492)
.+.++|+.+|++..+.++++.++. ++.+..+||+.+...+. .+..+|+|+|+ .+.... .+.++
T Consensus 67 ~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 139 (720)
T 2zj8_A 67 QGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_dssp HCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGE
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcC
Confidence 467999999999999999999863 46788999987654431 13678999997 222222 25677
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 140 ~~vIi 144 (720)
T 2zj8_A 140 KILVA 144 (720)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87773
No 171
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=60.39 E-value=12 Score=42.11 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=46.3
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cccc-CCCCC
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPN 155 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G-idi~~ 155 (492)
.....++||.+|++..+.+++..+.+. +.+..+||+.+ .+...+|+|+|+- +.++ ..+.+
T Consensus 79 ~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~ 147 (997)
T 4a4z_A 79 HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIRD 147 (997)
T ss_dssp HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGGG
T ss_pred HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhcC
Confidence 345678999999999999999999863 47889999874 2345678888862 1122 23455
Q ss_pred cCEEE
Q 011149 156 VDLII 160 (492)
Q Consensus 156 v~~VI 160 (492)
+.+||
T Consensus 148 l~lvV 152 (997)
T 4a4z_A 148 VEFVI 152 (997)
T ss_dssp EEEEE
T ss_pred CCEEE
Confidence 66665
No 172
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=59.40 E-value=36 Score=28.35 Aligned_cols=60 Identities=13% Similarity=0.010 Sum_probs=34.6
Q ss_pred CeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecC----ccceeEeecC-HHHHHHHHhhcC
Q 011149 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDLP-EEIAKELLNKQI 353 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~----~~~gs~fdv~-~~~a~~~i~~~~ 353 (492)
...+|+|..- ...++..+|..++....+ |-.+.+..+. ....+||+.. .+.|+++++.+.
T Consensus 38 ~~~~l~V~nl----p~~~t~~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 38 KSCTLYVGNL----SFYTTEEQIYELFSKSGD-----IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TCCEEEEESC----CTTCCHHHHHHHHGGGSC-----EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHhcCC-----eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3457777532 245788999999877654 4455664331 1224566653 445666666544
No 173
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=59.04 E-value=13 Score=41.92 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=49.5
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHcc-cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-CCC
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDI 153 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi 153 (492)
++..+....++||.+||+..+.+.+..|... -.+..++|+.+.. ...+|+|+|+ .+.++ ..+
T Consensus 122 i~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l 190 (1010)
T 2xgj_A 122 IAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVM 190 (1010)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTG
T ss_pred HHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchh
Confidence 3334445689999999999999999999863 3677889986532 2467999997 22233 456
Q ss_pred CCcCEEE
Q 011149 154 PNVDLII 160 (492)
Q Consensus 154 ~~v~~VI 160 (492)
.++.+||
T Consensus 191 ~~l~lVV 197 (1010)
T 2xgj_A 191 REVAWVI 197 (1010)
T ss_dssp GGEEEEE
T ss_pred hcCCEEE
Confidence 6778777
No 174
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=58.17 E-value=7.8 Score=30.46 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=32.4
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCC
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (492)
+..+.++.++||||.+-..+...+..|.. ++.+..|.|++.
T Consensus 49 ~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 49 WKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp GGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 33344567899999998888889999885 678888988863
No 175
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=58.09 E-value=17 Score=38.71 Aligned_cols=66 Identities=20% Similarity=0.093 Sum_probs=48.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc---ccccCCCCCcCEEEe
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---AARGLDIPNVDLIIH 161 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~---~~~Gidi~~v~~VI~ 161 (492)
.+.++||.+||++.|.++++.+.+ ...+...+|+.. ..+..+|+|+|+- ....+++.++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 456999999999999999988875 345666666643 3557789999982 234567778898885
Q ss_pred cC
Q 011149 162 YE 163 (492)
Q Consensus 162 ~~ 163 (492)
=.
T Consensus 325 DE 326 (666)
T 3o8b_A 325 DE 326 (666)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 176
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=58.05 E-value=59 Score=34.52 Aligned_cols=83 Identities=22% Similarity=0.308 Sum_probs=57.9
Q ss_pred EEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccc---eeee--------------------cCCCC-
Q 011149 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA---SEAL--------------------HGDIS- 122 (492)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~---~~~l--------------------hg~~~- 122 (492)
.-+....|..++..++... ..++||.++++..|.+++..|+..++ |..+ |...+
T Consensus 34 ~g~tgs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~ 111 (664)
T 1c4o_A 34 LGATGTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASI 111 (664)
T ss_dssp EECTTSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSC
T ss_pred EcCCCcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhccc
Confidence 3455667877777777654 46899999999999999999986432 2222 13332
Q ss_pred ----HHHHHHHHhhhcCCCeEEEEecccccccC
Q 011149 123 ----QHQRERTLNGFRQGKFTVLVATDVAARGL 151 (492)
Q Consensus 123 ----~~~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (492)
...|..++.++..+.-.|+|+|-.+-.++
T Consensus 112 ~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 112 NPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp CHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 45788888888766666888876544553
No 177
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=55.53 E-value=22 Score=32.14 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=34.5
Q ss_pred CeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecC----ccceeEeecC-HHHHHHHHhhcC
Q 011149 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDLP-EEIAKELLNKQI 353 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~----~~~gs~fdv~-~~~a~~~i~~~~ 353 (492)
...+|+|..- ...++..+|..++..... ..|-.|.|..+. ...++||+.. .+.+++.|+.+.
T Consensus 67 ~~~~lfVgnL----~~~~te~~L~~~F~~~G~---~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 67 KRIALYIGNL----TWWTTDEDLTEAVHSLGV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp --CEEEEESC----CTTCCHHHHHHHHHTTTC---CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CccEEEEeCC----CCCCCHHHHHHHHHHHCC---cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 3457888533 245788999998876542 135566665441 1223566553 345666666544
No 178
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=54.95 E-value=15 Score=29.56 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHHHccC-CeEEEEe-CChHHHHHHHHHHHc-ccceeeecCCCC
Q 011149 82 ITVYAKG-GKTIVFT-QTKRDADEVSLALTS-IIASEALHGDIS 122 (492)
Q Consensus 82 l~~~~~~-~~~iVF~-~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (492)
+..+.+. .++|||| .+-..+..++..|.. ++.+..|.|++.
T Consensus 82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3334456 7899999 577777788888875 668889999874
No 179
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=52.97 E-value=86 Score=31.84 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=73.5
Q ss_pred EEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccc--eeee-------cCCCC-----HHHHHHH
Q 011149 64 LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA--SEAL-------HGDIS-----QHQRERT 129 (492)
Q Consensus 64 ~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~--~~~l-------hg~~~-----~~~r~~~ 129 (492)
+...-+....|.-++..++... +.++||.|++...|.+++..|+..+. |..+ |-..+ ..+|..+
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~ 94 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHH
Confidence 3444556667777777777553 56899999999999999999985321 3222 11111 2468888
Q ss_pred HhhhcCCCeEEEEecccccccCCCC-----CcCEEEecCCCCChhHHHHHhh
Q 011149 130 LNGFRQGKFTVLVATDVAARGLDIP-----NVDLIIHYELPNDPETFVHRSG 176 (492)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidi~-----~v~~VI~~~~P~~~~~y~qr~G 176 (492)
+.++.+++..|||+|-.+....=.| .-.+.+..+-..+.+.+.++.=
T Consensus 95 l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~ 146 (483)
T 3hjh_A 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 (483)
T ss_dssp HHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHH
Confidence 9988887777888875444433333 2345667777778888877653
No 180
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=51.97 E-value=30 Score=25.41 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=29.5
Q ss_pred HHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCC
Q 011149 79 SDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (492)
Q Consensus 79 ~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (492)
...+..+ .++.+++|||.+-..+...+..|.. ++. +..+ |++
T Consensus 30 ~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 30 KERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 3344444 4567899999998888888888875 554 5555 664
No 181
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=51.87 E-value=23 Score=32.05 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.-|..+...++... ..++||+++++..++++.+.+.+ .+. +..++++.. ...+|+|+|.
T Consensus 119 ~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp TTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 45655554444433 57999999999999999998886 345 677787753 1456888884
No 182
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=51.83 E-value=15 Score=28.55 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=32.8
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCCC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (492)
...+..+.++.++||||.+-..+..++..|.. ++ .+..|.|++.
T Consensus 49 ~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 49 GAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 33444455678899999998888888888885 66 4778888863
No 183
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=50.71 E-value=12 Score=40.24 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=54.2
Q ss_pred ccHHHHH-HHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 72 TSKRTIL-SDLITVYA-KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 72 ~~k~~~l-~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.-|.... ..+++.+. .+.++|+.+|++..+.+++..++. ++.+..++|+....++ .+ ...+|+|+|+
T Consensus 57 sGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tp 129 (715)
T 2va8_A 57 SGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTY 129 (715)
T ss_dssp SCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECH
T ss_pred CcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcH
Confidence 3454433 33333332 467999999999999999998853 4678889998765442 12 2678999997
Q ss_pred -----cccccCC-CCCcCEEE
Q 011149 146 -----VAARGLD-IPNVDLII 160 (492)
Q Consensus 146 -----~~~~Gid-i~~v~~VI 160 (492)
.+..... +.++++||
T Consensus 130 e~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 130 EKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp HHHHHHHHHCCGGGGGEEEEE
T ss_pred HHHHHHHhCChhHhhccCEEE
Confidence 2222322 66788887
No 184
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=50.23 E-value=16 Score=28.44 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.7
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCC
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (492)
..+.+..++||||.+-..+...+..|.. ++. +..|.|++
T Consensus 47 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 47 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 4445667899999998888888888885 664 77888885
No 185
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=49.18 E-value=23 Score=35.63 Aligned_cols=73 Identities=18% Similarity=0.099 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-ccc
Q 011149 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AAR 149 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~ 149 (492)
-|..+...++... ..++||.||++..+.+.++.+.+ .+. +..+||+... ..+|+|+|.- +..
T Consensus 120 GKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~ 184 (472)
T 2fwr_A 120 GKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAYV 184 (472)
T ss_dssp CHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHHH
Confidence 4655444444443 57999999999999999999987 456 8888988642 3568999862 222
Q ss_pred cCC-C-CCcCEEE
Q 011149 150 GLD-I-PNVDLII 160 (492)
Q Consensus 150 Gid-i-~~v~~VI 160 (492)
-++ + ..+++||
T Consensus 185 ~~~~~~~~~~liI 197 (472)
T 2fwr_A 185 NAEKLGNRFMLLI 197 (472)
T ss_dssp THHHHTTTCSEEE
T ss_pred HHHHhcCCCCEEE
Confidence 221 1 3467776
No 186
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=48.35 E-value=20 Score=33.25 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=41.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-ccc--CCCCCcCEEE
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-ARG--LDIPNVDLII 160 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-~~G--idi~~v~~VI 160 (492)
.++||.++|+..+++..+.+.+. ..+..++++....+ -.....+|+|+|.-. .+- ..+..+++||
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vI 230 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMMM 230 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEEE
Confidence 49999999999999999988753 24556666643321 112456799999622 111 1244556666
No 187
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=46.28 E-value=1.6e+02 Score=31.10 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=72.0
Q ss_pred EEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccc---eeeec--------------------CCC--
Q 011149 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA---SEALH--------------------GDI-- 121 (492)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~---~~~lh--------------------g~~-- 121 (492)
.-+....|.-++..++... ..++||.++++..|.+++..|+..++ |..+- -..
T Consensus 38 ~g~~gs~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~ 115 (661)
T 2d7d_A 38 LGATGTGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASI 115 (661)
T ss_dssp EECTTSCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEE
T ss_pred ECcCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhccc
Confidence 3455667877777777654 46899999999999999999986432 32221 111
Q ss_pred C---HHHHHHHHhhhcCCCeEEEEecccccccCCCCC----cCEEEecCCCCChhHHHHHhh
Q 011149 122 S---QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 176 (492)
Q Consensus 122 ~---~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~----v~~VI~~~~P~~~~~y~qr~G 176 (492)
+ ..+|..++.++..++-.|||+|-.+-.++-.|. -.+.+..+-..+.+.+.++.=
T Consensus 116 ~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L~ 177 (661)
T 2d7d_A 116 NDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLV 177 (661)
T ss_dssp CHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHHH
Confidence 1 567889999887666568888865545553322 234556666677777777653
No 188
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=44.44 E-value=5.8 Score=25.45 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=15.0
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
|-.|-=-|||..||+.
T Consensus 23 Ce~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 23 CEICEMFGHWATNCND 38 (42)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred cccceecccccccCCc
Confidence 9999999999999984
No 189
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=43.02 E-value=12 Score=30.09 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=30.5
Q ss_pred HHHHHccCCeEEEEeCChHH--HHHHHHHHHc-ccceeeecCCC
Q 011149 81 LITVYAKGGKTIVFTQTKRD--ADEVSLALTS-IIASEALHGDI 121 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~--~~~l~~~l~~-~~~~~~lhg~~ 121 (492)
.+..+.++.++||||.+-.. +..++..|.. ++.+..|.|++
T Consensus 64 ~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 64 RIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 33344456789999998766 7788888875 77788888885
No 190
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=42.95 E-value=12 Score=30.38 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=29.9
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCCC
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (492)
+.++.++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 34567899999998888888888875 664 778888863
No 191
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=40.37 E-value=12 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=29.8
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCC
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (492)
+.++.+++|||.+-..+...+..|.. ++.+..|.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 44667899999998888888888885 78877788875
No 192
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=38.78 E-value=1.2e+02 Score=26.36 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=74.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec----ccccccCCCCCcCEEEecC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPNVDLIIHYE 163 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT----~~~~~Gidi~~v~~VI~~~ 163 (492)
.+++++++.....+.+.+.+.+ ...+..+.+++... ....+.+ +...+|+||- ..+..-+++| ||.
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~--v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----VV~-- 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTRA--SKIAFGL-QDEVDAIISRGATSDYIKKSVSIP----SIS-- 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHH--HHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----EEE--
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHH--HHHHHHh-cCCCeEEEECChHHHHHHHhCCCC----EEE--
Confidence 5778888888777755554443 33555666765332 2333444 5567899974 3455556666 333
Q ss_pred CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 011149 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (492)
Q Consensus 164 ~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (492)
+|.+.-++++-+-++-+.+. -.+++-+.. -...++.+.+.++.++......+.+++.
T Consensus 76 I~~s~~Dil~al~~a~~~~~-kIavvg~~~-~~~~~~~~~~ll~~~i~~~~~~~~~e~~ 132 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN-ELALIAYKH-SIVDKHEIEAMLGVKIKEFLFSSEDEIT 132 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS-EEEEEEESS-CSSCHHHHHHHHTCEEEEEEECSGGGHH
T ss_pred EcCCHhHHHHHHHHHHhhCC-cEEEEeCcc-hhhHHHHHHHHhCCceEEEEeCCHHHHH
Confidence 35566677777766655443 234443332 2334677888889888887777776654
No 193
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=38.32 E-value=1.7e+02 Score=26.29 Aligned_cols=132 Identities=11% Similarity=0.049 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC-C-CceEEeeccccccccc--ceEEEEEEcCcccHHHHHHHHH
Q 011149 7 EEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-N-PLNIDLVGNQDEKLAE--GIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 7 ~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~-~-~~~i~~~~~~~~~~~~--~i~~~~~~~~~~~k~~~l~~ll 82 (492)
.+-.+.++........+..+.+++.+.+.. +++++. + ...|---+.....+.. ++....+.... .++|..|.
T Consensus 25 ~~~~~~i~~e~~~~~~I~vi~~~le~av~~-a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV~I~vs~---~Dil~aL~ 100 (225)
T 2pju_A 25 FELFRDISLEFDHLANITPIQLGFEKAVTY-IRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSG---YDVLQFLA 100 (225)
T ss_dssp HHHHHHHHTTTTTTCEEEEECCCHHHHHHH-HHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEECCCH---HHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEecCcHHHHHHH-HHHHHhcCCCeEEEeCChHHHHHHhhCCCCEEEecCCH---HHHHHHHH
Confidence 344455555444445566666777554443 444444 2 3222111111111112 23334444433 34443333
Q ss_pred HHHccCCe--EEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 83 TVYAKGGK--TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 83 ~~~~~~~~--~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.......+ ++-|-+....++.+.+.|...+....++. .++-+..+++.+...++++|+..
T Consensus 101 ~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~---~ee~~~~i~~l~~~G~~vVVG~~ 162 (225)
T 2pju_A 101 KAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYIT---EEDARGQINELKANGTEAVVGAG 162 (225)
T ss_dssp HTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESS---HHHHHHHHHHHHHTTCCEEEESH
T ss_pred HHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCC---HHHHHHHHHHHHHCCCCEEECCH
Confidence 22222233 45566778888889888876666666654 56667777777776777877644
No 194
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=38.24 E-value=23 Score=27.07 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=30.3
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCC
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (492)
+.++.++||||.+-..+...+..|.. ++.+..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 34567899999998888899999985 67888888875
No 195
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=37.53 E-value=21 Score=27.49 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.0
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCC
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (492)
+.++.++||||.+-..+...+..|.. ++.+..|.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34567899999998888888888885 67888888875
No 196
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=35.86 E-value=33 Score=25.74 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.0
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (492)
.+ .+++|||.+-..+...+..|.. ++.+..|.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 7899999998888888888885 677778888863
No 197
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=35.35 E-value=0.15 Score=46.26 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=41.1
Q ss_pred CCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHH
Q 011149 282 HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIA 345 (492)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a 345 (492)
++.+...++++++. +..|++..++..+|+...|..... +||.......+...+++...+...
T Consensus 77 f~~g~~~vlvaT~~--~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~ 142 (212)
T 3eaq_A 77 FRQGEVRVLVATDV--AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRD 142 (212)
T ss_dssp HHSSSCCEEEECTT--TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHH
T ss_pred HHCCCCeEEEecCh--hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHH
Confidence 34566778999987 688999888888888877765443 787777654444445555544333
No 198
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.74 E-value=2.5e+02 Score=25.10 Aligned_cols=125 Identities=8% Similarity=0.090 Sum_probs=75.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEec----ccccccCCCCCcCEEEe
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPNVDLIIH 161 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT----~~~~~Gidi~~v~~VI~ 161 (492)
.++++.++.....+.+.+.+.+. ..+..+.+.+.... ..+.+.+..+..+|+||- ..+..-+++| ||.
T Consensus 13 ~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av-~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iP----VV~ 87 (225)
T 2pju_A 13 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAV-TYIRKKLANERCDAIIAAGSNGAYLKSRLSVP----VIL 87 (225)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHH-HHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSC----EEE
T ss_pred CCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHH-HHHHHHHhcCCCeEEEeCChHHHHHHhhCCCC----EEE
Confidence 46677777777666444444431 34555556653322 222233444557899974 3555556666 333
Q ss_pred cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 011149 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (492)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (492)
+|.+.-++++-+-++-+.+. -.+++-+.. -...++.+.+.++.++......+.+++.
T Consensus 88 --I~vs~~Dil~aL~~a~~~~~-kIavVg~~~-~~~~~~~i~~ll~~~i~~~~~~~~ee~~ 144 (225)
T 2pju_A 88 --IKPSGYDVLQFLAKAGKLTS-SIGVVTYQE-TIPALVAFQKTFNLRLDQRSYITEEDAR 144 (225)
T ss_dssp --ECCCHHHHHHHHHHTTCTTS-CEEEEEESS-CCHHHHHHHHHHTCCEEEEEESSHHHHH
T ss_pred --ecCCHHHHHHHHHHHHhhCC-cEEEEeCch-hhhHHHHHHHHhCCceEEEEeCCHHHHH
Confidence 35577788888877766543 344444433 3445778889999999988877777654
No 199
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=34.65 E-value=1.6e+02 Score=22.95 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=42.3
Q ss_pred EEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 91 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.+||....+...++...++. +..+..|+++...+.|.+.++.|.....++--..|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtved 60 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVED 60 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCS
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeecc
Confidence 46777777777777777774 78899999999999999999999876666544333
No 200
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=34.46 E-value=0.21 Score=48.15 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=39.6
Q ss_pred CCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH
Q 011149 282 HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE 342 (492)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~ 342 (492)
++.+...++++++. +..|++..++..+|++..|..... +||.......+...+|+...+
T Consensus 74 f~~g~~~vLVaT~v--a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 74 FRQGEVRVLVATDV--AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp HHHTSCCEEEECST--TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSST
T ss_pred hhcCCceEEEEech--hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 44566789999987 788999999988898888765554 788777655454455665544
No 201
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=34.14 E-value=0.22 Score=43.51 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=32.2
Q ss_pred CCeEEEEEeecCccccCCCChhHHHHHHhhhCC------CCcCc----cccEEEeecCccceeEeecCH
Q 011149 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP------TAADE----IGKIHIIADDRVQGAVFDLPE 342 (492)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~------~~~~~----ig~i~~~~~~~~~gs~fdv~~ 342 (492)
.+...++++++. ...|++..++..+|+.+.| ....+ +||+......+...+++..++
T Consensus 82 ~g~~~vLvaT~~--~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 82 DGKEKVLITTNV--CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp TTSCSEEEECCS--CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred cCCCeEEEEecc--hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 344567777776 5677887777777777666 33222 777777655444445555443
No 202
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=33.28 E-value=1.2e+02 Score=26.56 Aligned_cols=73 Identities=7% Similarity=-0.012 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHc--cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecC--------CCCHHHHHHHHhhhcCCCeEE
Q 011149 72 TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg--------~~~~~~r~~~~~~F~~g~~~i 140 (492)
+.-.+.|...++... .-.+++|...+=+.+..+++.+.. .+-++.+|- .|+++.|++..+. .++|
T Consensus 26 eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~----G~~V 101 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKR----GAKI 101 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHT----TCEE
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhC----CCEE
Confidence 344444444444332 235788888888889888887732 233344443 3666666655554 7888
Q ss_pred EEeccccc
Q 011149 141 LVATDVAA 148 (492)
Q Consensus 141 LVaT~~~~ 148 (492)
+.+|-+++
T Consensus 102 ~t~tH~ls 109 (201)
T 1vp8_A 102 VRQSHILS 109 (201)
T ss_dssp EECCCTTT
T ss_pred EEEecccc
Confidence 88887654
No 203
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=32.15 E-value=61 Score=25.09 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.0
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCC
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (492)
+.++.++||||.+-..+...+..|.. ++....|.|++
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~ 90 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNV 90 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCH
Confidence 34567899999998888888888885 66557788885
No 204
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=31.87 E-value=59 Score=26.26 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=28.9
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (492)
.++.++||||.+=..+...+..|.. ++. +..|.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567899999997777788888875 664 788889873
No 205
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=31.61 E-value=1.5e+02 Score=21.58 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=35.3
Q ss_pred cceEEEEEEcCcccHHHHHHHHHHHHccC----CeEEEEeCChHHHHHHHHHHHc
Q 011149 60 EGIKLYAISTTATSKRTILSDLITVYAKG----GKTIVFTQTKRDADEVSLALTS 110 (492)
Q Consensus 60 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~----~~~iVF~~t~~~~~~l~~~l~~ 110 (492)
.+..+.|.....+....+|..+++.+.+. -++-|-..|+++++..+..|.+
T Consensus 15 knfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailik 69 (106)
T 1qys_A 15 KNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIK 69 (106)
T ss_dssp CEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHH
Confidence 44556666666666666777777665331 2566788999999999888754
No 206
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=31.36 E-value=53 Score=27.05 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=27.5
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (492)
.++.++||||.+-..+..++..|.. ++ .+..|.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3567899999987777788888875 66 5888888863
No 207
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=29.52 E-value=77 Score=27.94 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=46.7
Q ss_pred EEEEcC-cccHHHHHHHHHHHHcc--CCeEEEEeCChHHHHHHHHHHHcccceeeecC--------CCCHHHHHHHHhhh
Q 011149 65 YAISTT-ATSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALTSIIASEALHG--------DISQHQRERTLNGF 133 (492)
Q Consensus 65 ~~~~~~-~~~k~~~l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg--------~~~~~~r~~~~~~F 133 (492)
+|+..+ .+.-.+.|...++.... -.+++|...+=+.|..+++.+...+-++.+|- .|+++.|++..+.
T Consensus 26 ~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~- 104 (206)
T 1t57_A 26 CYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLER- 104 (206)
T ss_dssp EEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHH-
T ss_pred EEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccCCEEEEeCcCCCCCCCCCcCCHHHHHHHHhC-
Confidence 344333 33444445444444322 35788888888888888776633233344443 3677777766665
Q ss_pred cCCCeEEEEecccc
Q 011149 134 RQGKFTVLVATDVA 147 (492)
Q Consensus 134 ~~g~~~iLVaT~~~ 147 (492)
.++|+.+|-++
T Consensus 105 ---G~~V~t~tH~l 115 (206)
T 1t57_A 105 ---GVNVYAGSHAL 115 (206)
T ss_dssp ---TCEEECCSCTT
T ss_pred ---CCEEEEeeccc
Confidence 77888877765
No 208
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=28.18 E-value=87 Score=28.39 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=19.4
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHH
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALT 109 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~ 109 (492)
..++......+..|.|+.|+..+..+.....
T Consensus 54 ~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A 84 (231)
T 3bbn_B 54 CDLVFDASSRGKQFLIVGTKNKAADSVARAA 84 (231)
T ss_dssp HHHSHHHHTTTCCEEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence 3344433345677888989888776655444
No 209
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=27.63 E-value=44 Score=27.08 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=29.2
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (492)
.++.++||||.+-..+..++..|.. ++. +..|.|++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 4567899999998888888888875 664 88888886
No 210
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.26 E-value=84 Score=27.52 Aligned_cols=130 Identities=10% Similarity=0.112 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEee-cccccccc--cceEEEEEEcCcccHHHHHHHHH
Q 011149 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV-GNQDEKLA--EGIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 6 F~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~--~~i~~~~~~~~~~~k~~~l~~ll 82 (492)
+.+-+++++.... .++-...+++.+.+ .+++++ .....|-+. +.....+. .++....+.....+-+..|..
T Consensus 16 l~~~~~~i~~e~~--~~i~i~~~~l~~~v-~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~-- 89 (196)
T 2q5c_A 16 LLNLFPKLALEKN--FIPITKTASLTRAS-KIAFGL-QDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYN-- 89 (196)
T ss_dssp HHHHHHHHHHHHT--CEEEEEECCHHHHH-HHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhC--CceEEEECCHHHHH-HHHHHh-cCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHH--
Confidence 4455566666543 35656777775544 445555 433323222 11111111 223344444443344444333
Q ss_pred HHHccCCe--EEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 83 TVYAKGGK--TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 83 ~~~~~~~~--~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
......+ ++-|-+....++.+.+.|.-.+....++.. ++-+..+++.+...++++|+..
T Consensus 90 -a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~---~e~~~~i~~l~~~G~~vvVG~~ 150 (196)
T 2q5c_A 90 -AKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSE---DEITTLISKVKTENIKIVVSGK 150 (196)
T ss_dssp -HGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSG---GGHHHHHHHHHHTTCCEEEECH
T ss_pred -HHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCH---HHHHHHHHHHHHCCCeEEECCH
Confidence 3222334 455667778888899988766666667653 4445567777767778888744
No 211
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=24.48 E-value=1.6e+02 Score=23.55 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=37.1
Q ss_pred eEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 90 KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
+.+|.+..+.++..|.+.+.-...+...+|.++++..+.+.+..+ ...|+|-||
T Consensus 5 ~~vIVVEGk~D~~~L~~~~~~~~~iI~t~Gsi~~~~l~~I~~~~~--~r~VIi~TD 58 (119)
T 2fcj_A 5 EKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELE--GYDVYLLAD 58 (119)
T ss_dssp CEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTT--TSEEEEECC
T ss_pred CeEEEEechHHHHHHHHhcCCCCCEEEeCCccCHHHHHHHHHHhc--CCCEEEEEC
Confidence 568889999999988776532345677788888876666666543 335666666
No 212
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=24.37 E-value=50 Score=27.14 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=29.2
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCC
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (492)
+.++.++||||.+-..+..++..|.. ++. +..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 34567899999998888888888875 564 77888885
No 213
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=24.29 E-value=44 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.3
Q ss_pred ccCCeEEEEeCCh--HHHHHHHHHHHc-ccceeeecCCCC
Q 011149 86 AKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (492)
Q Consensus 86 ~~~~~~iVF~~t~--~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (492)
.++.++||||.+- ..+..++..|.. ++.+..|.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 4567899999987 577788888875 678888999863
No 214
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.56 E-value=1e+02 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc
Q 011149 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (492)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~ 110 (492)
++.....++..+. ...-|+|+.|+..++.+...+..
T Consensus 61 ~L~~Aa~~I~~i~-~~~~ILfVgTk~~aq~aV~k~A~ 96 (305)
T 3iz6_A 61 KLQLAARVIVAIE-NPQDIIVQSARPYGQRAVLKFAQ 96 (305)
T ss_dssp HHHHHHHHHHHTT-SSCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3333344454443 34457788999888877665553
No 215
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=23.37 E-value=83 Score=29.60 Aligned_cols=57 Identities=25% Similarity=0.228 Sum_probs=41.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcccc-eeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
..-+|||++.....+.+.+.++.+++ +.++..+++.++.+++.+.-+...+. ||.-+
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN 129 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPN 129 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence 46788999998888888888877888 66678889988777777766654443 44433
No 216
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=22.55 E-value=59 Score=26.32 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=28.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccc-eeeecCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (492)
++.++||||.+-..+...+..|.. ++. +..|.|++
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 457899999998888888888885 664 77888886
No 217
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=22.32 E-value=1.7e+02 Score=24.40 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHcc----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc
Q 011149 74 KRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (492)
Q Consensus 74 k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (492)
+.....+|+.. +..+.+++|.|.+.+.++.|-+.|-.. |-...+.++-+. ....|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~~------------~~~PV~L~~~~~~ 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPR------------GGAPVEIAWPQKR 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSST------------TCCSEEEECTTSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCCC------------CCCCEEEeCCCCC
Confidence 55666666644 456789999999999999999998642 222222232111 2457999876321
Q ss_pred ccCCCCCcCEEEecCC
Q 011149 149 RGLDIPNVDLIIHYEL 164 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~ 164 (492)
.-+.-+++||.+.
T Consensus 92 ---~~~~~~vLinL~~ 104 (150)
T 3sxu_A 92 ---SSSRRDILISLRT 104 (150)
T ss_dssp ---CCSCCSEEEECCS
T ss_pred ---CCCcCCEEEECCC
Confidence 1234568999875
No 218
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=22.28 E-value=1.4e+02 Score=32.21 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=37.3
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhh--------cCCCeEEEEecc
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF--------RQGKFTVLVATD 145 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F--------~~g~~~iLVaT~ 145 (492)
....++||.|| ...+.+-...+.+ .+.+..+||.............+ .....+|+|+|.
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 34678999999 5566666666665 46788888875444333333222 224567899885
No 219
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=22.22 E-value=53 Score=26.76 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=29.7
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-cc-ceeeecCCC
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (492)
+.++.++||||.+-..+...+..|.. ++ .+..|.|++
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 34567899999998888888888875 66 588888986
No 220
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=21.83 E-value=1.5e+02 Score=27.67 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=42.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccc-eeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
...-+|||++.....+.+.+.++.+++ +.++..+++.++.+++.+.-+...+. |+.-+
T Consensus 70 ~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN 128 (294)
T 2yv1_A 70 DANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPN 128 (294)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred CCCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence 346788899988888888888877888 56678889988877777776654443 44434
No 221
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=21.68 E-value=3.8e+02 Score=23.53 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=30.7
Q ss_pred CcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc
Q 011149 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (492)
Q Consensus 70 ~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~ 110 (492)
........+..+...+.+++.+++++++......+.+.|.+
T Consensus 169 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 209 (255)
T 3mb5_A 169 DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLRE 209 (255)
T ss_dssp CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 33344556777777777778888999999888888888874
Done!