BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011151
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 80 RGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCK 139
R ASVP I N + +L D+ +++ P +FD L + +++ +L
Sbjct: 30 RHASVPAGIPTNAQ-------ILYLHDNQ--ITKLEPGVFDSL-------INLKELYLGS 73
Query: 140 NFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPETLCE-LYNLERLNITSCNHLRELPQGI 197
N + +P + + L L L L G ++ LP + + L +L+ L CN L ELP+GI
Sbjct: 74 NQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKEL-FMCCNKLTELPRGI 131
Query: 198 GKLRKLMYLDNDDTWFLRYLPVG 220
+L L +L D L+ +P G
Sbjct: 132 ERLTHLTHLALDQNQ-LKSIPHG 153
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 21/117 (17%)
Query: 114 VLPQ-LFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET 172
VLP +FD+L L+ L ++C N + ++P IE+L HL +L+L Q +++ +P
Sbjct: 102 VLPSAVFDRLVHLKEL-------FMCCNKLTELPRGIERLTHLTHLAL-DQNQLKSIPHG 153
Query: 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGI---GELIN 226
+RL+ + +L P + R +MYL N W + + + G+ +N
Sbjct: 154 A-----FDRLSSLTHAYLFGNPWDC-ECRDIMYLRN---WVADHTSIAMRWDGKAVN 201
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 95 LRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQ-----------------RWL 137
RGL L + DY+ + +FD LT L L L Q +L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 138 CKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQ 195
N +K +P+ + ++L LK L L +++ +P +L NL+ L++ S N L+ +P
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSL-STNQLQSVPH 172
Query: 196 G----IGKLRKLMYLDN 208
G +GKL+ + N
Sbjct: 173 GAFDRLGKLQTITLFGN 189
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 95 LRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQ-----------------RWL 137
RGL L + DY+ + +FD LT L L L Q +L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 138 CKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQ 195
N +K +P+ + ++L LK L L +++ +P +L NL+ L++ S N L+ +P
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSL-STNQLQSVPH 172
Query: 196 G----IGKLRKLMYLDN 208
G +GKL+ + N
Sbjct: 173 GAFDRLGKLQTITLFGN 189
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 108 YSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK-KIPTNIEKLLHLKYLSLCGQREI 166
+++ S +P L+ LR LKL WL N ++ +IP + + L+ L L
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKL-----WL--NMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 167 EKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGE 223
++P L NL +++++ E+P+ IG+L L L + F +P +G+
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 108 YSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK-KIPTNIEKLLHLKYLSLCGQREI 166
+++ S +P L+ LR LKL WL N ++ +IP + + L+ L L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKL-----WL--NMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 167 EKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGE 223
++P L NL +++++ E+P+ IG+L L L + F +P +G+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 337
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 361 LGKLPSLESLYIEGMQSVKRVG--NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEE 416
G LES +E S+KRV + + V TDGS++ L L YD E LE+
Sbjct: 256 FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 338 VMSLTNLRALLLKNCRNCEHLP-PLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSS 396
+ SL LR L ++ C LP PL + S +G+ +++ + E+ G+ S +S
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLAS--TDASGEHQGLVNLQSLRLEWTGIRSLP--AS 201
Query: 397 IIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP 448
I LK LK + +A+ I +P+L L++ GC L+ P
Sbjct: 202 IANLQNLKSLKIRNSPL-------SALGPAIHHLPKLEELDLRGCTALRNYP 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,610,946
Number of Sequences: 62578
Number of extensions: 596737
Number of successful extensions: 1164
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 20
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)