Query 011151
Match_columns 492
No_of_seqs 235 out of 3482
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9E-31 2E-35 286.3 22.0 412 7-471 470-909 (1153)
2 PLN00113 leucine-rich repeat r 100.0 2.5E-29 5.4E-34 274.8 16.9 374 69-467 140-559 (968)
3 PLN00113 leucine-rich repeat r 100.0 6.5E-29 1.4E-33 271.5 19.6 358 69-467 69-464 (968)
4 KOG4194 Membrane glycoprotein 99.9 5.9E-28 1.3E-32 227.5 5.2 345 69-467 78-428 (873)
5 KOG4658 Apoptotic ATPase [Sign 99.9 4.2E-27 9.1E-32 244.9 11.5 196 1-212 452-653 (889)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-28 2.6E-33 233.9 -5.7 344 66-468 29-375 (1255)
7 KOG4194 Membrane glycoprotein 99.9 3E-26 6.5E-31 216.0 2.9 341 69-463 102-447 (873)
8 KOG0444 Cytoskeletal regulator 99.9 4.8E-27 1.1E-31 223.0 -5.5 342 69-469 7-353 (1255)
9 PLN03210 Resistant to P. syrin 99.9 1.5E-22 3.2E-27 222.0 19.5 340 69-469 589-944 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 2.6E-25 5.6E-30 200.9 -5.1 260 69-375 45-307 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 3.9E-22 8.4E-27 180.5 -5.5 352 70-467 69-540 (565)
12 KOG0618 Serine/threonine phosp 99.8 3.4E-20 7.4E-25 184.4 -2.8 335 71-467 47-419 (1081)
13 KOG0618 Serine/threonine phosp 99.7 4.2E-19 9.2E-24 176.7 -2.5 344 69-467 68-488 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 1.3E-15 2.7E-20 156.3 12.6 255 97-444 202-458 (788)
15 PRK15387 E3 ubiquitin-protein 99.6 5.1E-15 1.1E-19 151.8 13.2 253 70-412 202-456 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 2.9E-15 6.3E-20 154.5 9.2 139 69-237 178-316 (754)
17 KOG4237 Extracellular matrix p 99.5 5.1E-16 1.1E-20 140.9 -1.8 270 68-376 66-357 (498)
18 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.7E-21 128.5 -5.5 129 94-235 31-160 (264)
19 KOG4237 Extracellular matrix p 99.5 8.1E-16 1.8E-20 139.6 -1.1 290 73-410 50-355 (498)
20 KOG0617 Ras suppressor protein 99.5 2.7E-16 5.9E-21 126.6 -4.0 155 68-239 32-187 (264)
21 PRK15370 E3 ubiquitin-protein 99.5 5.6E-14 1.2E-18 145.1 10.6 116 97-236 179-294 (754)
22 cd00116 LRR_RI Leucine-rich re 99.5 7E-15 1.5E-19 140.6 2.7 135 94-235 21-175 (319)
23 cd00116 LRR_RI Leucine-rich re 99.5 4.3E-15 9.3E-20 142.0 1.2 273 115-441 15-317 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.4 3.8E-13 8.1E-18 141.2 6.6 326 94-465 521-856 (889)
25 KOG4341 F-box protein containi 99.1 7.9E-12 1.7E-16 114.9 -1.7 293 154-472 139-443 (483)
26 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3E-16 117.6 -3.3 215 72-352 53-270 (722)
27 PF14580 LRR_9: Leucine-rich r 99.0 6.6E-10 1.4E-14 93.8 4.7 127 94-235 17-150 (175)
28 PF14580 LRR_9: Leucine-rich r 98.9 8.2E-10 1.8E-14 93.3 4.8 124 69-210 19-149 (175)
29 KOG1909 Ran GTPase-activating 98.9 4.9E-10 1.1E-14 101.1 2.4 19 274-292 207-225 (382)
30 KOG4341 F-box protein containi 98.9 1.5E-10 3.2E-15 106.8 -2.5 268 177-472 138-418 (483)
31 KOG1909 Ran GTPase-activating 98.9 3.4E-10 7.5E-15 102.1 -0.4 260 147-443 24-310 (382)
32 COG4886 Leucine-rich repeat (L 98.8 5.8E-09 1.3E-13 102.7 5.2 198 100-360 97-295 (394)
33 KOG1259 Nischarin, modulator o 98.8 1.7E-09 3.7E-14 95.6 0.9 223 94-376 180-410 (490)
34 KOG3207 Beta-tubulin folding c 98.7 7E-10 1.5E-14 102.9 -2.4 205 121-376 119-337 (505)
35 KOG3207 Beta-tubulin folding c 98.7 1.4E-09 3.1E-14 100.9 -0.4 134 94-238 119-259 (505)
36 KOG1259 Nischarin, modulator o 98.7 1.5E-09 3.3E-14 95.9 -0.6 126 97-237 285-411 (490)
37 KOG0532 Leucine-rich repeat (L 98.7 2.4E-10 5.2E-15 109.3 -6.4 130 94-239 119-248 (722)
38 KOG2120 SCF ubiquitin ligase, 98.6 2.7E-09 5.9E-14 94.3 -3.0 167 274-467 204-375 (419)
39 COG4886 Leucine-rich repeat (L 98.6 4.5E-08 9.7E-13 96.4 4.5 177 94-294 114-291 (394)
40 PLN03150 hypothetical protein; 98.6 1.6E-07 3.4E-12 97.2 8.3 105 124-235 419-525 (623)
41 KOG2120 SCF ubiquitin ligase, 98.5 5.2E-09 1.1E-13 92.5 -3.0 118 274-414 254-376 (419)
42 PLN03150 hypothetical protein; 98.5 2.2E-07 4.8E-12 96.0 7.2 89 154-242 419-507 (623)
43 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.3E-12 63.7 3.7 56 154-211 2-59 (61)
44 PF13855 LRR_8: Leucine rich r 98.3 5.7E-07 1.2E-11 62.2 4.1 49 139-188 10-60 (61)
45 KOG0531 Protein phosphatase 1, 98.3 8.1E-08 1.8E-12 94.8 -1.0 237 94-376 70-316 (414)
46 KOG0531 Protein phosphatase 1, 98.2 2.3E-07 5E-12 91.6 -1.3 108 120-239 69-176 (414)
47 KOG3665 ZYG-1-like serine/thre 98.0 3.1E-06 6.7E-11 87.5 3.1 135 153-291 122-261 (699)
48 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.2E-10 51.3 3.7 34 154-188 2-35 (44)
49 COG5238 RNA1 Ran GTPase-activa 97.9 7.5E-06 1.6E-10 72.0 3.3 154 275-442 152-314 (388)
50 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.3E-10 50.4 3.2 41 123-171 1-41 (44)
51 KOG2982 Uncharacterized conser 97.9 1.3E-05 2.9E-10 71.4 3.8 206 151-373 69-287 (418)
52 KOG1859 Leucine-rich repeat pr 97.8 4.2E-07 9.2E-12 90.0 -6.9 130 63-213 159-291 (1096)
53 PRK15386 type III secretion pr 97.7 0.00018 4E-09 68.7 9.3 76 274-374 46-121 (426)
54 KOG1859 Leucine-rich repeat pr 97.7 1.8E-06 3.8E-11 85.8 -4.3 85 147-237 181-266 (1096)
55 KOG4579 Leucine-rich repeat (L 97.7 6.3E-06 1.4E-10 64.8 -0.9 83 120-211 50-133 (177)
56 COG5238 RNA1 Ran GTPase-activa 97.7 2.8E-05 6E-10 68.5 2.9 92 276-376 210-314 (388)
57 KOG3665 ZYG-1-like serine/thre 97.6 3.7E-05 8.1E-10 79.6 3.4 149 69-231 122-281 (699)
58 KOG2982 Uncharacterized conser 97.6 3E-05 6.5E-10 69.2 2.3 87 94-188 69-157 (418)
59 KOG4579 Leucine-rich repeat (L 97.6 1.2E-05 2.7E-10 63.2 -0.1 87 70-171 54-140 (177)
60 KOG1947 Leucine rich repeat pr 97.5 1.8E-05 4E-10 80.2 0.1 46 429-474 399-446 (482)
61 PRK15386 type III secretion pr 97.5 0.00011 2.5E-09 70.1 5.0 31 201-234 156-186 (426)
62 KOG1947 Leucine rich repeat pr 97.4 1.7E-05 3.7E-10 80.4 -2.5 233 176-446 187-442 (482)
63 KOG1644 U2-associated snRNP A' 97.2 0.00086 1.9E-08 56.8 5.5 105 281-410 43-149 (233)
64 KOG1644 U2-associated snRNP A' 97.0 0.00079 1.7E-08 57.0 3.9 102 96-211 42-150 (233)
65 KOG2123 Uncharacterized conser 96.9 8E-05 1.7E-09 65.9 -2.9 99 95-207 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.6 0.00094 2E-08 59.0 1.5 61 151-213 41-103 (260)
67 KOG2123 Uncharacterized conser 96.3 0.00048 1E-08 61.2 -2.2 98 69-183 19-123 (388)
68 PF13306 LRR_5: Leucine rich r 96.1 0.02 4.3E-07 46.2 6.8 102 92-210 8-112 (129)
69 KOG3864 Uncharacterized conser 96.0 0.0005 1.1E-08 58.2 -3.2 65 399-467 123-188 (221)
70 KOG3864 Uncharacterized conser 95.7 0.00062 1.4E-08 57.6 -3.8 87 344-445 103-190 (221)
71 KOG2739 Leucine-rich acidic nu 95.7 0.0044 9.5E-08 54.9 1.0 82 173-258 39-122 (260)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.008 1.7E-07 31.5 0.9 17 155-172 2-18 (22)
73 PF13504 LRR_7: Leucine rich r 93.1 0.067 1.5E-06 25.9 1.4 15 154-169 2-16 (17)
74 PF00560 LRR_1: Leucine Rich R 93.0 0.05 1.1E-06 28.4 0.9 20 125-151 2-21 (22)
75 PF13306 LRR_5: Leucine rich r 92.8 0.29 6.3E-06 39.2 5.7 114 70-204 13-129 (129)
76 KOG0473 Leucine-rich repeat pr 91.1 0.0074 1.6E-07 52.4 -5.5 83 94-188 40-122 (326)
77 KOG0473 Leucine-rich repeat pr 90.9 0.011 2.4E-07 51.3 -4.7 87 119-214 38-124 (326)
78 smart00367 LRR_CC Leucine-rich 90.4 0.15 3.3E-06 27.8 1.1 19 454-472 1-19 (26)
79 smart00369 LRR_TYP Leucine-ric 88.2 0.47 1E-05 25.7 2.1 19 153-172 2-20 (26)
80 smart00370 LRR Leucine-rich re 88.2 0.47 1E-05 25.7 2.1 19 153-172 2-20 (26)
81 smart00367 LRR_CC Leucine-rich 87.9 0.32 6.9E-06 26.5 1.2 17 430-446 1-17 (26)
82 KOG4308 LRR-containing protein 83.0 0.043 9.4E-07 54.7 -6.6 45 424-469 397-446 (478)
83 PF13516 LRR_6: Leucine Rich r 75.1 0.78 1.7E-05 24.3 -0.3 13 201-213 2-14 (24)
84 KOG4308 LRR-containing protein 74.2 0.1 2.2E-06 52.1 -7.0 215 98-327 89-329 (478)
85 smart00364 LRR_BAC Leucine-ric 64.4 4.4 9.6E-05 22.1 1.2 17 154-171 3-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 57.9 8.7 0.00019 20.9 1.6 12 153-164 2-13 (26)
87 smart00368 LRR_RI Leucine rich 42.5 20 0.00044 19.7 1.6 12 153-164 2-13 (28)
88 KOG3763 mRNA export factor TAP 38.3 22 0.00048 35.8 2.1 80 120-207 215-307 (585)
89 PF14162 YozD: YozD-like prote 32.9 47 0.001 21.3 2.2 21 2-22 11-31 (57)
90 KOG3763 mRNA export factor TAP 31.7 25 0.00054 35.4 1.4 69 277-357 215-285 (585)
91 PF13463 HTH_27: Winged helix 26.4 93 0.002 21.1 3.3 31 4-34 34-64 (68)
92 COG3432 Predicted transcriptio 21.5 88 0.0019 23.5 2.3 39 2-43 45-83 (95)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=9e-31 Score=286.31 Aligned_cols=412 Identities=21% Similarity=0.271 Sum_probs=269.4
Q ss_pred HHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhccce-------EEeecCCcccccccccCccceEEEEEEee
Q 011151 7 EYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNEC-------LTVEVHSGEELAINSFGEKKILHLLLTLH 79 (492)
Q Consensus 7 ~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 79 (492)
..++.|+++|||+.... .++|||++|+||+.++.++. +.+.......+.....++.+++.+.+...
T Consensus 470 ~~l~~L~~ksLi~~~~~-------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRED-------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred hChHHHHhcCCEEEcCC-------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 34889999999987542 48899999999999987652 33333322222222334467788777655
Q ss_pred cCCCcccccccCccCCCCceEEEeccCCc---cccccccchhhccCC-eeeEEecchhhhhhccccccccCchhhccCcC
Q 011151 80 RGASVPISIWGNVKGLRGLRSLLVESDDY---SWFSEVLPQLFDKLT-CLRALKLEVRQRWLCKNFIKKIPTNIEKLLHL 155 (492)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L 155 (492)
.+.+... -..+|.++++|+.|.+..+.. ......+|..|..++ .|+.|++. ++.+..+|..+ .+.+|
T Consensus 543 ~~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~-------~~~l~~lP~~f-~~~~L 613 (1153)
T PLN03210 543 EIDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD-------KYPLRCMPSNF-RPENL 613 (1153)
T ss_pred ccceeee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec-------CCCCCCCCCcC-CccCC
Confidence 5544111 112345899999999976531 112333566566654 58999998 88888888776 56889
Q ss_pred CEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEe
Q 011151 156 KYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235 (492)
Q Consensus 156 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 235 (492)
+.|++.++. +..+|..+..+++|+.|+++++..+..+|. ++.+++|+.|++++|.....+|..+..+++|+.|++..+
T Consensus 614 ~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 614 VKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 999999988 888888888899999999988876777775 788889999999998877888888888889999888876
Q ss_pred ecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhh-------------
Q 011151 236 GGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR------------- 302 (492)
Q Consensus 236 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~------------- 302 (492)
.....++.. ..++.|+.+.+.++....... ...++|+.|+++++.+...+..-...
T Consensus 692 ~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 692 ENLEILPTG----INLKSLYRLNLSGCSRLKSFP-------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCcCccCCc----CCCCCCCEEeCCCCCCccccc-------cccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 544322221 146667777766664433211 12356777777777643322100000
Q ss_pred ----hhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccc
Q 011151 303 ----RESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSV 378 (492)
Q Consensus 303 ----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 378 (492)
......+.....+++|+.|++++|..... + |..+..+++|+.|++++|...+.+|....+++|+.|++++|..+
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-L-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccc-c-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence 00000000011234566666666543332 4 55566666666666666655555555335666666666666544
Q ss_pred eeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCC
Q 011151 379 KRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQ 458 (492)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~ 458 (492)
..++. ..++|+.|++.++. ++ .+|.++..+++|+.|++++|+.++.+|..+..+++|+
T Consensus 839 ~~~p~---------------~~~nL~~L~Ls~n~-i~------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 839 RTFPD---------------ISTNISDLNLSRTG-IE------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred ccccc---------------cccccCEeECCCCC-Cc------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 33221 22456666655532 22 3567788999999999999999999998888999999
Q ss_pred eEEEeCCCchhhh
Q 011151 459 KLLIGRCPILEER 471 (492)
Q Consensus 459 ~L~l~~c~~l~~~ 471 (492)
.+++++|+.+++.
T Consensus 897 ~L~l~~C~~L~~~ 909 (1153)
T PLN03210 897 TVDFSDCGALTEA 909 (1153)
T ss_pred eeecCCCcccccc
Confidence 9999999988754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.5e-29 Score=274.79 Aligned_cols=374 Identities=18% Similarity=0.173 Sum_probs=207.3
Q ss_pred cceEEEEEEeecCCC-cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccc-cccC
Q 011151 69 KKILHLLLTLHRGAS-VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFI-KKIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~l~ 146 (492)
++++.+++++|.+.. .|..+. ++++|+.|++++|. +.+.+|..+.++++|++|+++ ++.+ ..+|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~----~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~-------~n~l~~~~p 205 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIG----SFSSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLA-------SNQLVGQIP 205 (968)
T ss_pred CCCCEEECcCCcccccCChHHh----cCCCCCEEECccCc---ccccCChhhhhCcCCCeeecc-------CCCCcCcCC
Confidence 678889998888763 555555 88889999998887 666677778888888888888 5554 3567
Q ss_pred chhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
..+.++++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++++++|++|++++|.+.+.+|..+..+++
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 77888888888888888855577777888888888888888766677777788888888888888776677777777777
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChh--------------------hhhHhhhcccCCcceEe
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAG--------------------EARRAELEKKKNLVELG 286 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~--------------------~~~~~~l~~~~~L~~L~ 286 (492)
|+.|+++.+......+ ..+..++.|+.+.+.......... ......+..+++|+.|+
T Consensus 286 L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 286 LISLDLSDNSLSGEIP---ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred cCEEECcCCeeccCCC---hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 7777777665543222 222333444444333221110000 00112233344444444
Q ss_pred cccccCCCCchhhHh------------hhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccC
Q 011151 287 LHFDRLRDGDEEQAR------------RRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 287 l~~~~l~~~~~~~~~------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~ 354 (492)
+++|.+.+....... .......+..+..+++|+.|++++|.+... + |..+..+++|+.|++++|.+
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-~-p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-L-PSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-C-ChhHhcCCCCCEEECcCCcc
Confidence 444443211100000 000011222233344444444444444321 2 44444455555555555544
Q ss_pred CCcCCC-CCCCCccceeeccccccceeecccccCCc-----------CCCCCCcccccccccceeccCcccccccccCcc
Q 011151 355 CEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVE-----------SDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTA 422 (492)
Q Consensus 355 ~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 422 (492)
.+.++. +..+++|+.|++++|.....++..+.... .......+..+++|+.|++++|. +.+.
T Consensus 441 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~ 514 (968)
T PLN00113 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK------LSGE 514 (968)
T ss_pred cCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc------ceee
Confidence 443333 34455555555555543322221110000 00001112233334444433321 2233
Q ss_pred ccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 423 IKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 423 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+|..+..+++|+.|+|++|...+.+|..+..+++|+.|++++|..
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 455556666677777766655555666666677777777776654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=6.5e-29 Score=271.54 Aligned_cols=358 Identities=20% Similarity=0.242 Sum_probs=187.0
Q ss_pred cceEEEEEEeecCCC-cccccccCccCCCCceEEEeccCCccccccccchhh-ccCCeeeEEecchhhhhhcccccc---
Q 011151 69 KKILHLLLTLHRGAS-VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLF-DKLTCLRALKLEVRQRWLCKNFIK--- 143 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~--- 143 (492)
.+++.++++++.+.. .+..+. .+++|+.|++++|. +.+.+|..+ ..+++|++|+++ ++.+.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~----~l~~L~~L~Ls~n~---~~~~ip~~~~~~l~~L~~L~Ls-------~n~l~~~~ 134 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIF----RLPYIQTINLSNNQ---LSGPIPDDIFTTSSSLRYLNLS-------NNNFTGSI 134 (968)
T ss_pred CcEEEEEecCCCccccCChHHh----CCCCCCEEECCCCc---cCCcCChHHhccCCCCCEEECc-------CCcccccc
Confidence 356677777666554 233333 66777777777665 444344333 356666666666 43332
Q ss_pred --------------------ccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCC
Q 011151 144 --------------------KIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKL 203 (492)
Q Consensus 144 --------------------~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 203 (492)
.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++++++|
T Consensus 135 p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 135 PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred CccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 334445555555555555555333455555555555555555555444455555555555
Q ss_pred cEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcc
Q 011151 204 MYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLV 283 (492)
Q Consensus 204 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 283 (492)
++|++++|.+.+.+|..+.++++|++|++..+..... ....+..+++|+.+.+....-.. .....+..+++|+
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~ 287 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP---IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLI 287 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc---cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcC
Confidence 5555555555445555555555555555554443321 12223333344443333221100 0112344555666
Q ss_pred eEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CC
Q 011151 284 ELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LG 362 (492)
Q Consensus 284 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~ 362 (492)
.|++++|.+ ....+..+..+++|+.|++++|.+... + |.++..+++|+.|++++|.+.+.+|. ++
T Consensus 288 ~L~Ls~n~l------------~~~~p~~~~~l~~L~~L~l~~n~~~~~-~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 288 SLDLSDNSL------------SGEIPELVIQLQNLEILHLFSNNFTGK-I-PVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred EEECcCCee------------ccCCChhHcCCCCCcEEECCCCccCCc-C-ChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 666666553 223444555667777777777766542 3 66666777777777777766665554 66
Q ss_pred CCCccceeeccccccceeecccccCCcC------------CCCCCcccccccccceeccCcccccccccCccccccccCC
Q 011151 363 KLPSLESLYIEGMQSVKRVGNEFLGVES------------DTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIM 430 (492)
Q Consensus 363 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~------------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 430 (492)
.+++|+.|++++|.....++..+..... .........+++|+.|++.+|. +.+.+|..+..+
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~------l~~~~p~~~~~l 427 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS------FSGELPSEFTKL 427 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE------eeeECChhHhcC
Confidence 6777777777776633333322211000 0001112344555555555443 222344555566
Q ss_pred CCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 431 PRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 431 ~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
++|+.|++++|.....+|..+..+++|+.|++++|..
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 6677777766554445555555667777777777654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=5.9e-28 Score=227.45 Aligned_cols=345 Identities=17% Similarity=0.202 Sum_probs=236.5
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-c
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-T 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~ 147 (492)
...+.|++++|.+.++...++ .++++|+.+.+..|. ++. +|.+.....+|+.|+|. +|.+..+. +
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f---~nl~nLq~v~l~~N~---Lt~-IP~f~~~sghl~~L~L~-------~N~I~sv~se 143 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFF---YNLPNLQEVNLNKNE---LTR-IPRFGHESGHLEKLDLR-------HNLISSVTSE 143 (873)
T ss_pred cceeeeeccccccccCcHHHH---hcCCcceeeeeccch---hhh-cccccccccceeEEeee-------ccccccccHH
Confidence 456667777777766443322 267777777777776 555 66644455567777777 77776664 3
Q ss_pred hhhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.+..++.||.|+|+.|. +.++|.. +..-.++++|++++|.+...-...+.++.+|..|.+++|++....+..+.++++
T Consensus 144 ~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 46667777777777777 6666543 555567888888888743333345677778888888888775555556777888
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceE--ecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhh
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSI--RGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRE 304 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~--~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 304 (492)
|+.|++..+..... ....++.|..|+.+.+ +.+....+ ..+-.+.++++|++..|++
T Consensus 223 L~~LdLnrN~iriv---e~ltFqgL~Sl~nlklqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l------------ 281 (873)
T KOG4194|consen 223 LESLDLNRNRIRIV---EGLTFQGLPSLQNLKLQRNDISKLDD------GAFYGLEKMEHLNLETNRL------------ 281 (873)
T ss_pred hhhhhccccceeee---hhhhhcCchhhhhhhhhhcCcccccC------cceeeecccceeecccchh------------
Confidence 88888887766531 1222333444443322 33333333 4467788999999999884
Q ss_pred HHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecc
Q 011151 305 SERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGN 383 (492)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~ 383 (492)
....-.++..++.|+.|+++.|.+.. +.+.....+++|+.|+|++|.+..--+. +..+..|++|.|+.|+ +..+.+
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e 358 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQR--IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE 358 (873)
T ss_pred hhhhcccccccchhhhhccchhhhhe--eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh
Confidence 33344567788999999999999888 7677788899999999999977654333 7778889999999988 655555
Q ss_pred cccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCC-cccCCCCCCCeEEE
Q 011151 384 EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP-DLLLQKTTLQKLLI 462 (492)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l 462 (492)
..+. .+.+|++|+++++. +. |++.+ -...+..+|+|++|.+.| ++++.|| ..+..+++||+|++
T Consensus 359 ~af~-----------~lssL~~LdLr~N~-ls-~~IED-aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 359 GAFV-----------GLSSLHKLDLRSNE-LS-WCIED-AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hHHH-----------HhhhhhhhcCcCCe-EE-EEEec-chhhhccchhhhheeecC-ceeeecchhhhccCcccceecC
Confidence 4433 67789999887753 22 22221 113456789999999999 6888887 45777899999999
Q ss_pred eCCCc
Q 011151 463 GRCPI 467 (492)
Q Consensus 463 ~~c~~ 467 (492)
.+|+.
T Consensus 424 ~~Nai 428 (873)
T KOG4194|consen 424 GDNAI 428 (873)
T ss_pred CCCcc
Confidence 99875
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.94 E-value=4.2e-27 Score=244.90 Aligned_cols=196 Identities=28% Similarity=0.402 Sum_probs=165.8
Q ss_pred ChhHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhc-----cceEEeecC-CcccccccccCccceEEE
Q 011151 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCS-----NECLTVEVH-SGEELAINSFGEKKILHL 74 (492)
Q Consensus 1 ~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l 74 (492)
++|.|++|+.+|+++||++..+.. ++..+|+|||+||+||.++++ .++.++..+ +..+.+....| ..+|++
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~ 528 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRM 528 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEE
Confidence 479999999999999999998754 777899999999999999999 666555554 44455555555 699999
Q ss_pred EEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCc
Q 011151 75 LLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLH 154 (492)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~ 154 (492)
++.++.+..++.+. +++.|++|.+..|.. ++.....++|..++.|++|||++ +..+..+|..++++-+
T Consensus 529 s~~~~~~~~~~~~~-----~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~------~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSS-----ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSG------NSSLSKLPSSIGELVH 596 (889)
T ss_pred EEeccchhhccCCC-----CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCC------CCccCcCChHHhhhhh
Confidence 99999998766655 678999999999864 34554667789999999999995 5667899999999999
Q ss_pred CCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCc
Q 011151 155 LKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTW 212 (492)
Q Consensus 155 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 212 (492)
||||+++++. +..+|..++++++|.+|++..+.....+|.....+++|++|.+....
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999999 99999999999999999999988666776666679999999987653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.2e-28 Score=233.88 Aligned_cols=344 Identities=21% Similarity=0.239 Sum_probs=262.2
Q ss_pred cCccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-
Q 011151 66 FGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK- 144 (492)
Q Consensus 66 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~- 144 (492)
..+..++-+-+....+..+|..+. .+.+|+.|.+.+|. +.. +...+..++.||.+.+. .|.+..
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~----~lqkLEHLs~~HN~---L~~-vhGELs~Lp~LRsv~~R-------~N~LKns 93 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELS----RLQKLEHLSMAHNQ---LIS-VHGELSDLPRLRSVIVR-------DNNLKNS 93 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHH----HHhhhhhhhhhhhh---hHh-hhhhhccchhhHHHhhh-------ccccccC
Confidence 334567777777778887888777 88888888888887 555 33337778888888888 666643
Q ss_pred -cCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccc-cCCCCCcEEecCCCccccccccccc
Q 011151 145 -IPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 145 -l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
+|..+..+..|+.|+|++|+ +++.|..+.+.+++-+|++++|. ++.+|..+ -++.-|-.||+++|++ +.+|+.+.
T Consensus 94 GiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~R 170 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIR 170 (1255)
T ss_pred CCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh-hhcCHHHH
Confidence 78888888999999999998 88899888888999999999988 88888654 4788888899998865 77888888
Q ss_pred ccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhh
Q 011151 223 ELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR 302 (492)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 302 (492)
.+..|++|.+++++.. ..-+..++.++.|+.+++.+-+... ..++..+.++.+|+.++++.|.+
T Consensus 171 RL~~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~L---------- 234 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENNL---------- 234 (1255)
T ss_pred HHhhhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccCC----------
Confidence 8889999988888765 3345666667777777666543321 22335678888999999999885
Q ss_pred hhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeec
Q 011151 303 RESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 303 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
..+|..+-++++|+.|+|++|.+++ + ......-.+|+.|+++.|+++.-+..+..+++|+.|++.+|+ +.
T Consensus 235 ---p~vPecly~l~~LrrLNLS~N~ite--L-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~--- 304 (1255)
T KOG0444|consen 235 ---PIVPECLYKLRNLRRLNLSGNKITE--L-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LT--- 304 (1255)
T ss_pred ---CcchHHHhhhhhhheeccCcCceee--e-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-cc---
Confidence 4567777788999999999999888 6 545556678999999999665544448889999999998876 22
Q ss_pred ccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEE
Q 011151 383 NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLI 462 (492)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l 462 (492)
|.|. ++.++.+.+|+.+...++. | +.+|..+..|+.|+.|.++. +.+-.+|..+.-++.|+.||+
T Consensus 305 --FeGi-----PSGIGKL~~Levf~aanN~-L------ElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 305 --FEGI-----PSGIGKLIQLEVFHAANNK-L------ELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred --ccCC-----ccchhhhhhhHHHHhhccc-c------ccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeec
Confidence 1111 1224477788887776643 2 33677888999999999977 566668999999999999999
Q ss_pred eCCCch
Q 011151 463 GRCPIL 468 (492)
Q Consensus 463 ~~c~~l 468 (492)
+.||++
T Consensus 370 reNpnL 375 (1255)
T KOG0444|consen 370 RENPNL 375 (1255)
T ss_pred cCCcCc
Confidence 999975
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=3e-26 Score=216.02 Aligned_cols=341 Identities=19% Similarity=0.225 Sum_probs=259.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
++++.+.+..|.+..+|.... ...+|+.|++.+|. +...-.+.++.++.||+|||+ .|.+..+|.
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~----~sghl~~L~L~~N~---I~sv~se~L~~l~alrslDLS-------rN~is~i~~~ 167 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGH----ESGHLEKLDLRHNL---ISSVTSEELSALPALRSLDLS-------RNLISEIPKP 167 (873)
T ss_pred Ccceeeeeccchhhhcccccc----cccceeEEeeeccc---cccccHHHHHhHhhhhhhhhh-------hchhhcccCC
Confidence 689999999999999887665 67789999999998 555555778899999999999 999999884
Q ss_pred hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
++..-.++++|+|++|. ++.+.. .|..+.+|-.|.++.|+ +..+|. .+.++++|+.|++..|.+....-..+..++
T Consensus 168 sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred CCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 47777899999999999 776644 37788899999999999 777775 466799999999999976433234577889
Q ss_pred cccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhH
Q 011151 226 NLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRES 305 (492)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 305 (492)
+|+.|.+..+....-....+-.+.++..|. |..+.+..+.. ..+-++++|+.|+++.|.+.
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~-L~~N~l~~vn~------g~lfgLt~L~~L~lS~NaI~------------ 306 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLN-LETNRLQAVNE------GWLFGLTSLEQLDLSYNAIQ------------ 306 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceee-cccchhhhhhc------ccccccchhhhhccchhhhh------------
Confidence 999999988876642222333344444332 33344444433 45778999999999999953
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeeccc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNE 384 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~ 384 (492)
..-++.+..++.|+.|+|+.|.++. +++..+..+..|+.|+|+.|.+...-.. +..+.+|++|+|++|. +....+.
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IED 383 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED 383 (873)
T ss_pred eeecchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec
Confidence 3345677788999999999999999 8788899999999999999965443322 7789999999999987 4433332
Q ss_pred ccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccC-CcccCCCCCCCeEEEe
Q 011151 385 FLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKAL-PDLLLQKTTLQKLLIG 463 (492)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~ 463 (492)
..+ ...++|+|+.|.+.++. ++.+.- .++..+++|+.|++.+|. +.+| |..++.+ .|++|.+.
T Consensus 384 aa~--------~f~gl~~LrkL~l~gNq-lk~I~k-----rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 384 AAV--------AFNGLPSLRKLRLTGNQ-LKSIPK-----RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chh--------hhccchhhhheeecCce-eeecch-----hhhccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 221 13379999999998864 666542 457789999999999854 5544 5666666 88888655
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=4.8e-27 Score=223.03 Aligned_cols=342 Identities=17% Similarity=0.227 Sum_probs=275.1
Q ss_pred cceEEEEEEeecCCC--cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC
Q 011151 69 KKILHLLLTLHRGAS--VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 146 (492)
+=+|.+++++|..+. +|.++ +.++.++-|.+.... +.. +|+.++.+.+|++|.++ +|.+..+-
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v----~qMt~~~WLkLnrt~---L~~-vPeEL~~lqkLEHLs~~-------HN~L~~vh 71 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV----EQMTQMTWLKLNRTK---LEQ-VPEELSRLQKLEHLSMA-------HNQLISVH 71 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH----HHhhheeEEEechhh---hhh-ChHHHHHHhhhhhhhhh-------hhhhHhhh
Confidence 467888899998873 45444 488889988887765 555 88889999999999999 88888887
Q ss_pred chhhccCcCCEEEccCCCCcc--ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccc-ccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIE--KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVG-IGE 223 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~ 223 (492)
..+..++.||.+.++.|+ ++ .+|..+.++..|.+||+++|. ++..|..+....++-+|++++|++ +.+|.. +.+
T Consensus 72 GELs~Lp~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfin 148 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFIN 148 (1255)
T ss_pred hhhccchhhHHHhhhccc-cccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHh
Confidence 888899999999999998 54 688899999999999999999 889999999999999999999977 556654 457
Q ss_pred cccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhh
Q 011151 224 LINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRR 303 (492)
Q Consensus 224 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 303 (492)
+..|-.|+++.+.... .+..++.|..|+.+.+++- | ........+..+++|+.|.+++.+ +
T Consensus 149 LtDLLfLDLS~NrLe~----LPPQ~RRL~~LqtL~Ls~N---P-L~hfQLrQLPsmtsL~vLhms~Tq-----------R 209 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEM----LPPQIRRLSMLQTLKLSNN---P-LNHFQLRQLPSMTSLSVLHMSNTQ-----------R 209 (1255)
T ss_pred hHhHhhhccccchhhh----cCHHHHHHhhhhhhhcCCC---h-hhHHHHhcCccchhhhhhhccccc-----------c
Confidence 7788888888887654 6677777888888776652 1 222333556777888888888766 3
Q ss_pred hHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecc
Q 011151 304 ESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGN 383 (492)
Q Consensus 304 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 383 (492)
+...+|..+..+.+|..++++.|+... + |+.+-++++|+.|+|++|.++.---..+...+|++|+++.|+ +..++.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~--v-Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~ 285 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLPI--V-PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPD 285 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCCc--c-hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchH
Confidence 567788888899999999999999988 8 888889999999999999776543345667789999999998 555554
Q ss_pred cccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEe
Q 011151 384 EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIG 463 (492)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~ 463 (492)
.+. .+++|+.|...++. +.| +.+|+.++.+..|+.+...+ +++.-+|.++..|+.|++|.++
T Consensus 286 avc------------KL~kL~kLy~n~Nk----L~F-eGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 286 AVC------------KLTKLTKLYANNNK----LTF-EGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred HHh------------hhHHHHHHHhccCc----ccc-cCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccc
Confidence 432 78899999877654 334 34789999999999999988 7889999999999999999999
Q ss_pred CCCchh
Q 011151 464 RCPILE 469 (492)
Q Consensus 464 ~c~~l~ 469 (492)
.|..++
T Consensus 348 ~NrLiT 353 (1255)
T KOG0444|consen 348 HNRLIT 353 (1255)
T ss_pred ccceee
Confidence 887643
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.5e-22 Score=221.97 Aligned_cols=340 Identities=19% Similarity=0.207 Sum_probs=225.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.++|.+.+.++.+..+|..+ ...+|+.|++.++. +.. ++..+..+++|+.|+|++ ...+..+|.
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-----~~~~L~~L~L~~s~---l~~-L~~~~~~l~~Lk~L~Ls~------~~~l~~ip~- 652 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-----RPENLVKLQMQGSK---LEK-LWDGVHSLTGLRNIDLRG------SKNLKEIPD- 652 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-----CccCCcEEECcCcc---ccc-cccccccCCCCCEEECCC------CCCcCcCCc-
Confidence 45777777777766666654 45777777777776 544 555566777788888873 334556653
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+..+++|++|++++|..+..+|..+.++++|+.|++++|..++.+|..+ ++++|+.|++++|.....+|.. ..+|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 6677788888888777677777777778888888888777677777655 6777888888877655555532 34566
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCC--C-hhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVS--D-AGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRES 305 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~--~-~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 305 (492)
.|++..+.... .+ ..-.+.+|+.+.+..+.... . ............++|+.|++++|. ..
T Consensus 729 ~L~L~~n~i~~-lP----~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~------------~l 791 (1153)
T PLN03210 729 WLDLDETAIEE-FP----SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP------------SL 791 (1153)
T ss_pred eeecCCCcccc-cc----ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC------------Cc
Confidence 66666554332 11 11123344444333221100 0 000000112345789999999886 23
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEF 385 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 385 (492)
..+|..+..+++|+.|++++|..... + |..+ .+++|+.|++++|.....+|.. .++|+.|++++|. ++.++..
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~-L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s- 864 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLET-L-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW- 864 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCe-e-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH-
Confidence 44677788999999999999865553 6 5444 7899999999999887777664 4689999999876 5555543
Q ss_pred cCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcc-------------cC
Q 011151 386 LGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDL-------------LL 452 (492)
Q Consensus 386 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-------------l~ 452 (492)
+..+++|+.|++.+|++++.+.. .+..+++|+.+++++|..++.++.. ..
T Consensus 865 -----------i~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~ 927 (1153)
T PLN03210 865 -----------IEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHS 927 (1153)
T ss_pred -----------HhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccc
Confidence 23789999999999999987554 3458899999999999988754311 01
Q ss_pred CCCCCCeEEEeCCCchh
Q 011151 453 QKTTLQKLLIGRCPILE 469 (492)
Q Consensus 453 ~l~~L~~L~l~~c~~l~ 469 (492)
.++....+.+.+|.++.
T Consensus 928 ~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 928 KLPSTVCINFINCFNLD 944 (1153)
T ss_pred cCCchhccccccccCCC
Confidence 23334455667777665
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=2.6e-25 Score=200.88 Aligned_cols=260 Identities=23% Similarity=0.254 Sum_probs=168.2
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.....+.+.+|.+..+..++. ++..+.+|.+.+|. ... +|.+++.+..++.|+.+ .+.+..+|+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~----nL~~l~vl~~~~n~---l~~-lp~aig~l~~l~~l~vs-------~n~ls~lp~~ 109 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLK----NLACLTVLNVHDNK---LSQ-LPAAIGELEALKSLNVS-------HNKLSELPEQ 109 (565)
T ss_pred cchhhhhhccCchhhccHhhh----cccceeEEEeccch---hhh-CCHHHHHHHHHHHhhcc-------cchHhhccHH
Confidence 456677888888877666665 88888888888887 666 66668888888888888 8888888888
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+..+.+|+.|+.++|. ..++|+.++.+..|+.|+..+|+ +..+|.++..+.+|..|++.++.. ..+|+..-+++.|+
T Consensus 110 i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLK 186 (565)
T ss_pred Hhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHH
Confidence 8888888888888888 78888888888888888888888 778888888888888888888866 34444444478888
Q ss_pred ccceEEeecccCCCcCccccccccccCCceE--ecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSI--RGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~--~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
+|+...+.... .+.++..++.|..+++ +.+..+| .+.+|..|.++.++.|.+ .
T Consensus 187 ~ld~~~N~L~t----lP~~lg~l~~L~~LyL~~Nki~~lP--------ef~gcs~L~Elh~g~N~i-------------~ 241 (565)
T KOG0472|consen 187 HLDCNSNLLET----LPPELGGLESLELLYLRRNKIRFLP--------EFPGCSLLKELHVGENQI-------------E 241 (565)
T ss_pred hcccchhhhhc----CChhhcchhhhHHHHhhhcccccCC--------CCCccHHHHHHHhcccHH-------------H
Confidence 88766665443 3334444444444322 2222222 244555555555555542 2
Q ss_pred HHhhhcC-CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeecccc
Q 011151 307 RLLEALG-PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGM 375 (492)
Q Consensus 307 ~~~~~l~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~ 375 (492)
.++.... .++++..|+++.|...+ + |..+..+.+|.+||+++|.+..-++.++++ .|+.|.+.+|
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke--~-Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKE--V-PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred hhHHHHhcccccceeeecccccccc--C-chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence 2222222 34555555555555555 4 555555555555555555444433335555 4555555444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=3.9e-22 Score=180.50 Aligned_cols=352 Identities=22% Similarity=0.249 Sum_probs=187.5
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhh------------
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWL------------ 137 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------------ 137 (492)
.+..+.++++.....|.++. .+..++.+++++|. +.. +|+..+....|+.|+.+..+-..
T Consensus 69 ~l~vl~~~~n~l~~lp~aig----~l~~l~~l~vs~n~---ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIG----ELEALKSLNVSHNK---LSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred ceeEEEeccchhhhCCHHHH----HHHHHHHhhcccch---Hhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 44455555555555555544 55555555555554 333 44444444555555554000000
Q ss_pred ----ccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcc
Q 011151 138 ----CKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 138 ----~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
.++.+..+|..+.++..|..|++.+|. ++.+|+..-+++.|++||...|- ++.+|..++.+.+|..|++..|.+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccc
Confidence 044444445444455555555555555 44454444445555555555555 555666666666666666666644
Q ss_pred cccccccccccccccccceEEeecccCCCcCccc-cccccccCCceEe--cCCCCCChhhhhHhhhcccCCcceEecccc
Q 011151 214 LRYLPVGIGELINLRRVTKFVVGGGYDRARSLGS-LKKLNLLRECSIR--GLGGVSDAGEARRAELEKKKNLVELGLHFD 290 (492)
Q Consensus 214 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~~l~~~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 290 (492)
..+| +++.++.|++|+++.+.... ..++ ++++..+..+++. .+..+| ..+.-+++|+.|++++|
T Consensus 219 -~~lP-ef~gcs~L~Elh~g~N~i~~----lpae~~~~L~~l~vLDLRdNklke~P-------de~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 219 -RFLP-EFPGCSLLKELHVGENQIEM----LPAEHLKHLNSLLVLDLRDNKLKEVP-------DEICLLRSLERLDLSNN 285 (565)
T ss_pred -ccCC-CCCccHHHHHHHhcccHHHh----hHHHHhcccccceeeeccccccccCc-------hHHHHhhhhhhhcccCC
Confidence 3444 56666666666666555442 1222 2344444444442 233344 34666778888999988
Q ss_pred cCCCCchh---------------------hHhhhhHHHHhhhc------------------------------CCCCC--
Q 011151 291 RLRDGDEE---------------------QARRRESERLLEAL------------------------------GPPPN-- 317 (492)
Q Consensus 291 ~l~~~~~~---------------------~~~~~~~~~~~~~l------------------------------~~~~~-- 317 (492)
.++..++. ++-+..+..+...+ ....+
T Consensus 286 ~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tk 365 (565)
T KOG0472|consen 286 DISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTK 365 (565)
T ss_pred ccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhh
Confidence 88776654 00000000000000 00001
Q ss_pred ------------------------ccEEEEeecCCCcccc-----------------------CchhhhccccccEEEEe
Q 011151 318 ------------------------LKELVIDEYRGRRNVV-----------------------PRNWVMSLTNLRALLLK 350 (492)
Q Consensus 318 ------------------------L~~L~l~~~~~~~~~l-----------------------~~~~~~~l~~L~~L~L~ 350 (492)
...+++++|...+ + +|..++.+++|+.|+++
T Consensus 366 iL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e--lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 366 ILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE--LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhcccccccccCCHHHHHHhhhcceEEEecccchHhh--hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 2344444444333 2 13345567777777777
Q ss_pred cccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccC
Q 011151 351 NCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIII 429 (492)
Q Consensus 351 ~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 429 (492)
+| ...++|. ++.+..|++|+++.|+ ...+++-.. ...-|+.+ +.....+..+ -|..+..
T Consensus 444 NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y------------~lq~lEtl-las~nqi~~v-----d~~~l~n 503 (565)
T KOG0472|consen 444 NN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLY------------ELQTLETL-LASNNQIGSV-----DPSGLKN 503 (565)
T ss_pred cc-hhhhcchhhhhhhhhheecccccc-cccchHHHh------------hHHHHHHH-Hhcccccccc-----ChHHhhh
Confidence 66 4445554 6667777777777765 233332221 11223332 2222223332 2345789
Q ss_pred CCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 430 MPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 430 ~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+.+|+.|++.+ +.+..+|..++++.+|++|+++|||-
T Consensus 504 m~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 99999999988 67888999999999999999999984
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=3.4e-20 Score=184.41 Aligned_cols=335 Identities=21% Similarity=0.213 Sum_probs=159.7
Q ss_pred eEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhh
Q 011151 71 ILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIE 150 (492)
Q Consensus 71 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 150 (492)
+++++++.|.+..+|..+. .+++|+.|.++.|. +.. +|.....+.+|++|.|. ++.+..+|.++.
T Consensus 47 L~~l~lsnn~~~~fp~~it----~l~~L~~ln~s~n~---i~~-vp~s~~~~~~l~~lnL~-------~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQIT----LLSHLRQLNLSRNY---IRS-VPSSCSNMRNLQYLNLK-------NNRLQSLPASIS 111 (1081)
T ss_pred eEEeeccccccccCCchhh----hHHHHhhcccchhh---Hhh-Cchhhhhhhcchhheec-------cchhhcCchhHH
Confidence 4455555555554444444 45555555555554 333 44444555555555555 555555555555
Q ss_pred ccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRV 230 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 230 (492)
.+.+|++|++++|. ...+|.-+..+..++.+..++|..+..++. . .++++++..+.+...++.++..+.. .|
T Consensus 112 ~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~-~ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQ----T-SIKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred hhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcc----c-cchhhhhhhhhcccchhcchhhhhe--ee
Confidence 55555555555555 444554444454555555544421222211 0 1444445444444444544444443 34
Q ss_pred ceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhh
Q 011151 231 TKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLE 310 (492)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 310 (492)
++..+... ...+..+..|+.+.....+-.. .-..-++|+.|...+|.+.. ..
T Consensus 184 dLr~N~~~------~~dls~~~~l~~l~c~rn~ls~--------l~~~g~~l~~L~a~~n~l~~--------------~~ 235 (1081)
T KOG0618|consen 184 DLRYNEME------VLDLSNLANLEVLHCERNQLSE--------LEISGPSLTALYADHNPLTT--------------LD 235 (1081)
T ss_pred ecccchhh------hhhhhhccchhhhhhhhcccce--------EEecCcchheeeeccCccee--------------ec
Confidence 44444332 1112222222222211110000 00112344444444444210 11
Q ss_pred hcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEeccc-----------------------CCCcCCCCCCCCcc
Q 011151 311 ALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR-----------------------NCEHLPPLGKLPSL 367 (492)
Q Consensus 311 ~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~-----------------------~~~~~~~l~~l~~L 367 (492)
.-+.+.+|++++++++.+.. + |+|+..+.+|+.+....|. .....+.+..+..|
T Consensus 236 ~~p~p~nl~~~dis~n~l~~--l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHNNLSN--L-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSL 312 (1081)
T ss_pred cccccccceeeecchhhhhc--c-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccccccee
Confidence 11223345555555555444 4 4555555555555544443 33223335557788
Q ss_pred ceeeccccccceeecccccCCcCC--------------CCCCcccccccccceeccCcccccccccCccccccccCCCCc
Q 011151 368 ESLYIEGMQSVKRVGNEFLGVESD--------------TDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRL 433 (492)
Q Consensus 368 ~~L~l~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 433 (492)
++|+|..|. +...+..++..... .-...-..++.|+.|++.++. +++-++ ..+-.++.|
T Consensus 313 ~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~-----p~l~~~~hL 385 (1081)
T KOG0618|consen 313 RTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSCF-----PVLVNFKHL 385 (1081)
T ss_pred eeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccch-----hhhccccce
Confidence 888887776 44443332222110 001112245566666666643 544443 235577888
Q ss_pred ceEeecCCCCcccCC-cccCCCCCCCeEEEeCCCc
Q 011151 434 SFLEISGCCKLKALP-DLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 434 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~ 467 (492)
+.|++++ +.++.+| ..+.+++.|++|+++||..
T Consensus 386 KVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 386 KVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred eeeeecc-cccccCCHHHHhchHHhHHHhcccchh
Confidence 8888888 6777777 3466788888888888863
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=4.2e-19 Score=176.71 Aligned_cols=344 Identities=21% Similarity=0.194 Sum_probs=210.8
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++++.+++|.+..+|.+.. ++++|+.|.+.+|. .+. .|..+..+++|.+|+++ .+....+|..
T Consensus 68 ~~L~~ln~s~n~i~~vp~s~~----~~~~l~~lnL~~n~---l~~-lP~~~~~lknl~~LdlS-------~N~f~~~Pl~ 132 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYIRSVPSSCS----NMRNLQYLNLKNNR---LQS-LPASISELKNLQYLDLS-------FNHFGPIPLV 132 (1081)
T ss_pred HHHhhcccchhhHhhCchhhh----hhhcchhheeccch---hhc-CchhHHhhhcccccccc-------hhccCCCchh
Confidence 578899999999999887777 99999999999997 655 88889999999999999 9999999999
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+..+..+..+..++|..+..++... .+.+++..+.....++.++..+.. .|++++|.+. ...+..+.+|+
T Consensus 133 i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~ 202 (1081)
T KOG0618|consen 133 IEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLE 202 (1081)
T ss_pred HHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchh
Confidence 9999999999999884344444321 555566655544455555554444 4666666443 12233333333
Q ss_pred ccc--------------------eEEeecccCCCcCccccccccccCCceEec--CCCCCChhhhhHhhhcccCCcceEe
Q 011151 229 RVT--------------------KFVVGGGYDRARSLGSLKKLNLLRECSIRG--LGGVSDAGEARRAELEKKKNLVELG 286 (492)
Q Consensus 229 ~L~--------------------l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~ 286 (492)
.+. ...+.... ....+.-.+|+.+.++. ...++ ..+..+.+|+.++
T Consensus 203 ~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~-----~~~~p~p~nl~~~dis~n~l~~lp-------~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 203 VLHCERNQLSELEISGPSLTALYADHNPLTT-----LDVHPVPLNLQYLDISHNNLSNLP-------EWIGACANLEALN 270 (1081)
T ss_pred hhhhhhcccceEEecCcchheeeeccCccee-----eccccccccceeeecchhhhhcch-------HHHHhcccceEec
Confidence 333 33322221 00001111233333322 12222 4566777777777
Q ss_pred cccccCCCCchh----------hHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh-----------------
Q 011151 287 LHFDRLRDGDEE----------QARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM----------------- 339 (492)
Q Consensus 287 l~~~~l~~~~~~----------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~----------------- 339 (492)
..+|.+...... .........++........|++|+|..|.+.. +|+..+.
T Consensus 271 ~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~--lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS--LPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc--cchHHHhhhhHHHHHHhhhhcccc
Confidence 777776443221 11112223344445556778888888777666 5322211
Q ss_pred --------ccccccEEEEecccCCCcC-CCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccC
Q 011151 340 --------SLTNLRALLLKNCRNCEHL-PPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD 410 (492)
Q Consensus 340 --------~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (492)
.++.|+.|++.+|.+.++. |.+-++++|+.|+|++|+ +..++..... .++.|++|++++
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~-----------kle~LeeL~LSG 416 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLR-----------KLEELEELNLSG 416 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHh-----------chHHhHHHhccc
Confidence 2344666666666666553 446677778888887776 4444443332 666777777776
Q ss_pred ccccccccc-----------------CccccccccCCCCcceEeecCCCCccc--CCcccCCCCCCCeEEEeCCCc
Q 011151 411 MEELEEWDF-----------------GTAIKGEIIIMPRLSFLEISGCCKLKA--LPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 411 ~~~l~~~~~-----------------~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+. |+.+.. -..+| .+..+|.|+.+|++. +.++. +|..+. .++|++||++||..
T Consensus 417 Nk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 417 NK-LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred ch-hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCcc
Confidence 43 333320 01134 566788899999976 55553 343332 38999999999985
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.3e-15 Score=156.29 Aligned_cols=255 Identities=20% Similarity=0.187 Sum_probs=129.0
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcC
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCEL 176 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 176 (492)
.-..|+++.+. ++. +|..+. ++|+.|+++ +|.+..+|.. +++|++|++++|. ++.+|.. .
T Consensus 202 ~~~~LdLs~~~---Lts-LP~~l~--~~L~~L~L~-------~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p 261 (788)
T PRK15387 202 GNAVLNVGESG---LTT-LPDCLP--AHITTLVIP-------DNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---P 261 (788)
T ss_pred CCcEEEcCCCC---CCc-CCcchh--cCCCEEEcc-------CCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---c
Confidence 34556666665 444 444333 356667776 6666666642 3567777777766 5566542 3
Q ss_pred CCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCC
Q 011151 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRE 256 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~ 256 (492)
++|+.|++++|. +..+|.. ..+|+.|++++|.+ ..+|.. .++|+.|+++.|.... ++..+. . |+.
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~L-t~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~---~---L~~ 326 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQLAS-LPALPS---E---LCK 326 (788)
T ss_pred cccceeeccCCc-hhhhhhc---hhhcCEEECcCCcc-cccccc---ccccceeECCCCcccc-CCCCcc---c---ccc
Confidence 466667777666 4555542 24566666766654 334432 2456666666554432 111111 1 112
Q ss_pred ceEe--cCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 257 CSIR--GLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 257 l~~~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
+.+. .+..++. ...+|+.|++++|.|+..+ . .+++|+.|++++|.+.. +
T Consensus 327 L~Ls~N~L~~LP~----------lp~~Lq~LdLS~N~Ls~LP-------------~---lp~~L~~L~Ls~N~L~~--L- 377 (788)
T PRK15387 327 LWAYNNQLTSLPT----------LPSGLQELSVSDNQLASLP-------------T---LPSELYKLWAYNNRLTS--L- 377 (788)
T ss_pred cccccCccccccc----------cccccceEecCCCccCCCC-------------C---CCcccceehhhcccccc--C-
Confidence 2111 1111111 0135666777666653221 1 12456666666666555 5
Q ss_pred chhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEEL 414 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 414 (492)
|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|. +..++. ...+|+.|+++++. +
T Consensus 378 P~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~Nq-L 434 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYRNQ-L 434 (788)
T ss_pred ccc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhccCc-c
Confidence 432 2456666776665443 3332 2456666666665 333321 12345555555532 2
Q ss_pred cccccCccccccccCCCCcceEeecCCCCc
Q 011151 415 EEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444 (492)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 444 (492)
+ .+|..+..+++|+.|++++|+.-
T Consensus 435 t------~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 435 T------RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred c------ccChHHhhccCCCeEECCCCCCC
Confidence 2 24445556666666666665443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=5.1e-15 Score=151.85 Aligned_cols=253 Identities=21% Similarity=0.204 Sum_probs=179.8
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
+-..++++.+.+..+|..+. ++|+.|.+.+|. ++. +|. ..++|++|+++ +|.+..+|..
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~------~~L~~L~L~~N~---Lt~-LP~---lp~~Lk~LdLs-------~N~LtsLP~l- 260 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP------AHITTLVIPDNN---LTS-LPA---LPPELRTLEVS-------GNQLTSLPVL- 260 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh------cCCCEEEccCCc---CCC-CCC---CCCCCcEEEec-------CCccCcccCc-
Confidence 44578888898888887665 479999999988 655 554 25789999999 8899888853
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
..+|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. .++|+.|++++|.+. .+|... ..|+.
T Consensus 261 --p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~ 326 (788)
T PRK15387 261 --PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPALP---SELCK 326 (788)
T ss_pred --ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccc-cCCCCc---ccccc
Confidence 4688999999998 7777763 3578899999998 6777763 478999999999774 445422 35777
Q ss_pred cceEEeecccCCCcCccccccccccCCceEec--CCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRG--LGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
|.+..+.... ++ .++ ..|+.|.+.. +..++. ..++|+.|++++|.++..
T Consensus 327 L~Ls~N~L~~-LP----~lp--~~Lq~LdLS~N~Ls~LP~----------lp~~L~~L~Ls~N~L~~L------------ 377 (788)
T PRK15387 327 LWAYNNQLTS-LP----TLP--SGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLTSL------------ 377 (788)
T ss_pred cccccCcccc-cc----ccc--cccceEecCCCccCCCCC----------CCcccceehhhccccccC------------
Confidence 7777765543 11 111 2455554433 222221 124788899999886422
Q ss_pred HhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccC
Q 011151 308 LLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLG 387 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 387 (492)
+. .+.+|+.|++++|.+.. + |.. .++|+.|++++|.+.. +|.+ ..+|+.|++++|. ++.++..+.
T Consensus 378 -P~---l~~~L~~LdLs~N~Lt~--L-P~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~Nq-Lt~LP~sl~- 442 (788)
T PRK15387 378 -PA---LPSGLKELIVSGNRLTS--L-PVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQ-LTRLPESLI- 442 (788)
T ss_pred -cc---cccccceEEecCCcccC--C-CCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCc-ccccChHHh-
Confidence 21 13579999999999887 7 542 4689999999997654 5543 3578999999988 666665432
Q ss_pred CcCCCCCCcccccccccceeccCcc
Q 011151 388 VESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 388 ~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
.+++|+.|++++++
T Consensus 443 -----------~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 -----------HLSSETTVNLEGNP 456 (788)
T ss_pred -----------hccCCCeEECCCCC
Confidence 68899999998865
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=2.9e-15 Score=154.53 Aligned_cols=139 Identities=20% Similarity=0.325 Sum_probs=94.8
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.+...+.+.+.++..+|..+. +.|+.|++++|. +.. +|..+. ++|+.|+++ +|.+..+|..
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip------~~L~~L~Ls~N~---Lts-LP~~l~--~nL~~L~Ls-------~N~LtsLP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP------EQITTLILDNNE---LKS-LPENLQ--GNIKTLYAN-------SNQLTSIPAT 238 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc------cCCcEEEecCCC---CCc-CChhhc--cCCCEEECC-------CCccccCChh
Confidence 456677787777777776554 568888888887 555 444332 478888888 7778778765
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+. .+|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|.+. .+|..+. ++|+
T Consensus 239 l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~ 307 (754)
T PRK15370 239 LP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGIT 307 (754)
T ss_pred hh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccc-cCcccch--hhHH
Confidence 53 468888888888 777877654 478888888877 556776553 47888888888653 4554432 3566
Q ss_pred ccceEEeec
Q 011151 229 RVTKFVVGG 237 (492)
Q Consensus 229 ~L~l~~~~~ 237 (492)
.|+++.+..
T Consensus 308 ~L~Ls~N~L 316 (754)
T PRK15370 308 HLNVQSNSL 316 (754)
T ss_pred HHHhcCCcc
Confidence 666665543
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=5.1e-16 Score=140.94 Aligned_cols=270 Identities=21% Similarity=0.200 Sum_probs=176.8
Q ss_pred ccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 68 EKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
++....+.+-.|.|..+|...+ +.+++||.|++++|. ++.+-|++|+.++.|-.|-+.+ ++.+.++|.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF---~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg------~NkI~~l~k 133 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAF---KTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYG------NNKITDLPK 133 (498)
T ss_pred CCcceEEEeccCCcccCChhhc---cchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhc------CCchhhhhh
Confidence 3677778888888888776433 578888888888887 7777788888888877777763 588888885
Q ss_pred h-hhccCcCCEEEccCCCCcc-ccchhhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCccccccccccccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIE-KLPETLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 224 (492)
. |.++..|+.|.+.-|. +. .....+..+++|..|.+.+|. ++.++. .+..+..++++++..+.+. ..+++
T Consensus 134 ~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~i-----cdCnL 206 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFI-----CDCNL 206 (498)
T ss_pred hHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccc-----ccccc
Confidence 4 7788888888888777 44 334457788888888888887 666665 5677888888887766431 11222
Q ss_pred cccccc-----------------ceEEeecccCCCcCccccccccccCC-ceEecCCCCCChhhhhHhhhcccCCcceEe
Q 011151 225 INLRRV-----------------TKFVVGGGYDRARSLGSLKKLNLLRE-CSIRGLGGVSDAGEARRAELEKKKNLVELG 286 (492)
Q Consensus 225 ~~L~~L-----------------~l~~~~~~~~~~~~~~~l~~L~~L~~-l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 286 (492)
+.+... .+........... .-...+..+.. +.... . + +.......+.++++|++++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~--kf~c~~esl~s~~~~~d--~-~-d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR--KFLCSLESLPSRLSSED--F-P-DSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchh--hhhhhHHhHHHhhcccc--C-c-CCcChHHHHhhcccceEec
Confidence 222211 1110000000000 00000111111 01000 0 0 0111224588999999999
Q ss_pred cccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCC
Q 011151 287 LHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLP 365 (492)
Q Consensus 287 l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~ 365 (492)
+++|.+++ .-..++....+++.|.|.+|.+.. +....+..+..|+.|+|.+|+++...|. +..+.
T Consensus 281 lsnN~i~~------------i~~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 281 LSNNKITR------------IEDGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred cCCCccch------------hhhhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 99999643 334567777889999999998877 6556677899999999999988877666 77788
Q ss_pred ccceeeccccc
Q 011151 366 SLESLYIEGMQ 376 (492)
Q Consensus 366 ~L~~L~l~~~~ 376 (492)
.|.+|++-.|+
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 88888886654
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.2e-16 Score=128.54 Aligned_cols=129 Identities=26% Similarity=0.365 Sum_probs=63.4
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++++.|.+++|. +.. +|..++.+.+|++|+++ +++++++|..++.++.|+.|++.-|. +..+|.++
T Consensus 31 ~~s~ITrLtLSHNK---l~~-vppnia~l~nlevln~~-------nnqie~lp~~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK---LTV-VPPNIAELKNLEVLNLS-------NNQIEELPTSISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCc---eee-cCCcHHHhhhhhhhhcc-------cchhhhcChhhhhchhhhheecchhh-hhcCcccc
Confidence 44455555555554 443 22224455555555555 55555555555555555555555554 44455555
Q ss_pred hcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccccccceEEe
Q 011151 174 CELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 235 (492)
+.++.|++||+.+|...+ .+|..+..++.|+.|.+++|.+ +.+|.+++++++|+.|.+..+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccC
Confidence 555555555555444222 3444444445555555555543 444555555555555544443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=8.1e-16 Score=139.64 Aligned_cols=290 Identities=20% Similarity=0.131 Sum_probs=195.8
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~ 151 (492)
.++-.+.++.++|..+. +....+.+..|. ++.+.+.+|+.+++||.|||+ .|.++.+ |..|.+
T Consensus 50 ~VdCr~~GL~eVP~~LP------~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS-------~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP------PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLS-------KNNISFIAPDAFKG 113 (498)
T ss_pred eEEccCCCcccCcccCC------CcceEEEeccCC---cccCChhhccchhhhceeccc-------ccchhhcChHhhhh
Confidence 45556667888888776 778899999998 888888999999999999999 9999998 566999
Q ss_pred cCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccc-cccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPV-GIGELINLRR 229 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~ 229 (492)
+..|..|-+.+++.++++|+. |.++..|+.|.+.-|+..-.....+..+++|..|.+-+|.+ +.++. .+..+..+++
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKT 192 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccch
Confidence 999999998884449999985 88999999999999995556667789999999999999866 44444 6778888888
Q ss_pred cceEEeecccCCCcCccccccccccCC-c--eEecCCCCCChhhh-------hH-hhhcccCCcce-EecccccCCCCch
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRE-C--SIRGLGGVSDAGEA-------RR-AELEKKKNLVE-LGLHFDRLRDGDE 297 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~-l--~~~~~~~~~~~~~~-------~~-~~l~~~~~L~~-L~l~~~~l~~~~~ 297 (492)
+.+..+.... ..+++.+..... . ...+...+...... .. ........+.+ +.-..+. +
T Consensus 193 lhlA~np~ic-----dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~--d--- 262 (498)
T KOG4237|consen 193 LHLAQNPFIC-----DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP--D--- 262 (498)
T ss_pred HhhhcCcccc-----ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc--C---
Confidence 8877665321 112222211000 0 00111000000000 00 00001011100 0000111 0
Q ss_pred hhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 298 EQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
...-...+..+++|++|++++|.++. +-+.||....+++.|.|.+|++...-.. +.++..|+.|+|++|+
T Consensus 263 -------~~cP~~cf~~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 263 -------SICPAKCFKKLPNLRKLNLSNNKITR--IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred -------CcChHHHHhhcccceEeccCCCccch--hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 00011226778999999999999988 7688999999999999999976543333 7789999999999998
Q ss_pred cceeecccccCCcCCCCCCcccccccccceeccC
Q 011151 377 SVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD 410 (492)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (492)
++.+....+. .+.+|.+|.+..
T Consensus 334 -it~~~~~aF~-----------~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 334 -ITTVAPGAFQ-----------TLFSLSTLNLLS 355 (498)
T ss_pred -eEEEeccccc-----------ccceeeeeehcc
Confidence 6665554444 445666666654
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.7e-16 Score=126.59 Aligned_cols=155 Identities=26% Similarity=0.328 Sum_probs=140.9
Q ss_pred ccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 68 EKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
...++++.+++|.+..+|..+. ++.+|++|.+++|. ++. +|..+..++.||.|+++ -+.+..+|.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia----~l~nlevln~~nnq---ie~-lp~~issl~klr~lnvg-------mnrl~~lpr 96 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIA----ELKNLEVLNLSNNQ---IEE-LPTSISSLPKLRILNVG-------MNRLNILPR 96 (264)
T ss_pred hhhhhhhhcccCceeecCCcHH----Hhhhhhhhhcccch---hhh-cChhhhhchhhhheecc-------hhhhhcCcc
Confidence 3689999999999999998888 99999999999998 888 77779999999999999 889999999
Q ss_pred hhhccCcCCEEEccCCCCcc-ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIE-KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.|+.++.|++|++.+|.+-+ .+|..+..+..|+.|.+++|. .+.+|..++++++|+.|.+.+|.+ -.+|.+++.+.+
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHH
Confidence 99999999999999998333 688889999999999999999 889999999999999999999966 678999999999
Q ss_pred ccccceEEeeccc
Q 011151 227 LRRVTKFVVGGGY 239 (492)
Q Consensus 227 L~~L~l~~~~~~~ 239 (492)
|++|.+.++....
T Consensus 175 lrelhiqgnrl~v 187 (264)
T KOG0617|consen 175 LRELHIQGNRLTV 187 (264)
T ss_pred HHHHhcccceeee
Confidence 9999998887654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=5.6e-14 Score=145.09 Aligned_cols=116 Identities=20% Similarity=0.303 Sum_probs=64.1
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcC
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCEL 176 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 176 (492)
+...|.+.++. +.. +|..+ .+.|+.|+++ +|.+..+|..+. .+|++|++++|. +..+|..+.
T Consensus 179 ~~~~L~L~~~~---Lts-LP~~I--p~~L~~L~Ls-------~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~-- 240 (754)
T PRK15370 179 NKTELRLKILG---LTT-IPACI--PEQITTLILD-------NNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP-- 240 (754)
T ss_pred CceEEEeCCCC---cCc-CCccc--ccCCcEEEec-------CCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--
Confidence 34566666655 333 33322 1346666666 666666665443 366666666666 556665443
Q ss_pred CCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEee
Q 011151 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVG 236 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 236 (492)
.+|+.|++++|. +..+|..+. .+|+.|++++|.+. .+|..+. ++|+.|+++.|.
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 241 DTIQEMELSINR-ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCc
Confidence 356666666666 445555442 35666666666553 4454443 355555555443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=7e-15 Score=140.59 Aligned_cols=135 Identities=18% Similarity=0.099 Sum_probs=76.9
Q ss_pred CCCCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhccccccc-------cCchhhccCcCCEEEccCCCC
Q 011151 94 GLRGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-------IPTNIEKLLHLKYLSLCGQRE 165 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-------l~~~~~~l~~L~~L~L~~~~~ 165 (492)
.++.|+.+.+.++...... ..++..+...+.|+.|+++ ++.+.. ++..+..+++|++|++++|.+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~-------~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-------LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc-------ccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 5566788888777621100 1144445666777888777 444431 234456677888888887774
Q ss_pred ccccchhhhcCCC---CCeeecCcccccc----cccccccCC-CCCcEEecCCCccccc----ccccccccccccccceE
Q 011151 166 IEKLPETLCELYN---LERLNITSCNHLR----ELPQGIGKL-RKLMYLDNDDTWFLRY----LPVGIGELINLRRVTKF 233 (492)
Q Consensus 166 ~~~lp~~~~~l~~---L~~L~l~~~~~~~----~lp~~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~ 233 (492)
.+..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.+... ++..+..+..|++|++.
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 3344444444444 8888888777432 222334455 7778888887766422 22233444555555555
Q ss_pred Ee
Q 011151 234 VV 235 (492)
Q Consensus 234 ~~ 235 (492)
.+
T Consensus 174 ~n 175 (319)
T cd00116 174 NN 175 (319)
T ss_pred CC
Confidence 44
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=4.3e-15 Score=142.04 Aligned_cols=273 Identities=20% Similarity=0.162 Sum_probs=140.4
Q ss_pred cchhhccCCeeeEEecchhhhhhccccc-----cccCchhhccCcCCEEEccCCCCcc-------ccchhhhcCCCCCee
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFI-----KKIPTNIEKLLHLKYLSLCGQREIE-------KLPETLCELYNLERL 182 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~-----~~l~~~~~~l~~L~~L~L~~~~~~~-------~lp~~~~~l~~L~~L 182 (492)
....+..+..|++|+++ ++.+ ..++..+...++|++|+++++. +. .++..+..+++|+.|
T Consensus 15 ~~~~~~~l~~L~~l~l~-------~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 15 ATELLPKLLCLQVLRLE-------GNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred hHHHHHHHhhccEEeec-------CCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEE
Confidence 34445667778888888 6655 3355566677778888888876 33 233456677888888
Q ss_pred ecCcccccccccccccCCCC---CcEEecCCCccccc----cccccccc-ccccccceEEeecccCCCcCcccccccccc
Q 011151 183 NITSCNHLRELPQGIGKLRK---LMYLDNDDTWFLRY----LPVGIGEL-INLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 183 ~l~~~~~~~~lp~~~~~l~~---L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
++++|.+....+..+..+.+ |++|++++|.+... +...+..+ ++|+.|++..+....
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--------------- 151 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG--------------- 151 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc---------------
Confidence 88888754444444444443 88888888765421 12223344 555666555544331
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc--
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV-- 332 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-- 332 (492)
.........+..+++|++|++++|.+++. ....+...+...++|++|++++|.+....
T Consensus 152 ------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 152 ------------ASCEALAKALRANRDLKELNLANNGIGDA--------GIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred ------------hHHHHHHHHHHhCCCcCEEECcCCCCchH--------HHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 11111223344555666666666654321 11223333444456666666666544310
Q ss_pred -cCchhhhccccccEEEEecccCCCc-CCC-----CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccc
Q 011151 333 -VPRNWVMSLTNLRALLLKNCRNCEH-LPP-----LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKH 405 (492)
Q Consensus 333 -l~~~~~~~l~~L~~L~L~~~~~~~~-~~~-----l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 405 (492)
+ ...+..+++|++|++++|...+. +.. ....+.|++|++++|.........+... ...+++|+.
T Consensus 212 ~l-~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~--------~~~~~~L~~ 282 (319)
T cd00116 212 AL-AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV--------LAEKESLLE 282 (319)
T ss_pred HH-HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH--------HhcCCCccE
Confidence 1 22333556666666666654431 110 0123566666666665211001111111 114456666
Q ss_pred eeccCcccccccccCccccccccCC-CCcceEeecCC
Q 011151 406 LKFYDMEELEEWDFGTAIKGEIIIM-PRLSFLEISGC 441 (492)
Q Consensus 406 L~l~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c 441 (492)
++++++. +.+... ..+...+..+ +.|++|++.++
T Consensus 283 l~l~~N~-l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 283 LDLRGNK-FGEEGA-QLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred EECCCCC-CcHHHH-HHHHHHHhhcCCchhhcccCCC
Confidence 6666654 332210 1111223344 67777777664
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=3.8e-13 Score=141.22 Aligned_cols=326 Identities=25% Similarity=0.307 Sum_probs=212.8
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccc--ccccCch-hhccCcCCEEEccCCCCccccc
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNF--IKKIPTN-IEKLLHLKYLSLCGQREIEKLP 170 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp 170 (492)
+....|...+.++. +.. ++. -..++.|+.|-+. ++. +..++.. |..++.|++|+|++|.....+|
T Consensus 521 ~~~~~rr~s~~~~~---~~~-~~~-~~~~~~L~tLll~-------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNK---IEH-IAG-SSENPKLRTLLLQ-------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccc---hhh-ccC-CCCCCccceEEEe-------ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 55778888888887 333 232 2345579999888 554 5666544 7789999999999998788999
Q ss_pred hhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccc
Q 011151 171 ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 171 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
..++.+-+|++|+++++. +..+|.+++++.+|.+|++..+.....+|.....+++|+.|.+....... ....+.++..
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~ 666 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLKELEN 666 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-chhhHHhhhc
Confidence 999999999999999999 88999999999999999999987766777777779999999988765221 1445666777
Q ss_pred ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 251 LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 251 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
|+.|+.+.+..... .....+..++.|.+....-.. ........+..+..+.+|+.|.+.++.+.+
T Consensus 667 Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~---------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 667 LEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSI---------EGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhh---------cccccceeecccccccCcceEEEEcCCCch
Confidence 77777777754332 011223333343322221110 000123345567778899999999998865
Q ss_pred cccCchhh-----hc-cccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCccccccccc
Q 011151 331 NVVPRNWV-----MS-LTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLK 404 (492)
Q Consensus 331 ~~l~~~~~-----~~-l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 404 (492)
....+. .. ++++..+.+.+|....++...-..|+|+.|.+..|..++++....-.... ....+..++++.
T Consensus 732 --~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 732 --IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELILPFNKLE 807 (889)
T ss_pred --hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEEecccccc
Confidence 211221 12 56777777777777776665556789999999999877655432211110 000122445555
Q ss_pred ce-eccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCC
Q 011151 405 HL-KFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 405 ~L-~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 465 (492)
.+ .+.+.+.+..+..... .++.|+.+.+..|++++.+| .+.++.+.+|
T Consensus 808 ~l~~~~~l~~l~~i~~~~l------~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 808 GLRMLCSLGGLPQLYWLPL------SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred cceeeecCCCCceeEeccc------CccchhheehhcCcccccCc-------cccccceecc
Confidence 55 3444444444433221 45557788887777766554 4445566665
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=7.9e-12 Score=114.94 Aligned_cols=293 Identities=18% Similarity=0.148 Sum_probs=159.0
Q ss_pred cCCEEEccCCCCcc--ccchhhhcCCCCCeeecCccccccc--ccccccCCCCCcEEecCCCccccccc-c-cccccccc
Q 011151 154 HLKYLSLCGQREIE--KLPETLCELYNLERLNITSCNHLRE--LPQGIGKLRKLMYLDNDDTWFLRYLP-V-GIGELINL 227 (492)
Q Consensus 154 ~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~-~-~l~~l~~L 227 (492)
.|+.|.++++..++ .+-....+++++++|.+.+|..++. +-..-..|++|++|++..|...+... . ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555554332 1222234455555555555543221 11111245555555555543221111 1 12244555
Q ss_pred cccceEEeecccCCCcCc-cccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEeccccc-CCCCchhhHhhhhH
Q 011151 228 RRVTKFVVGGGYDRARSL-GSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR-LRDGDEEQARRRES 305 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~ 305 (492)
++++++++.... ...+ ...+.+..++.+...+|...+. .++...-..+..+.++++..+. + ++
T Consensus 219 ~~lNlSwc~qi~--~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~l-----------TD 283 (483)
T KOG4341|consen 219 KYLNLSWCPQIS--GNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQL-----------TD 283 (483)
T ss_pred HHhhhccCchhh--cCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccc-----------cc
Confidence 555555554432 1111 1123333344443344443332 1222223445556666655543 2 22
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC---CCCCCccceeeccccccceeec
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP---LGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~---l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
..+...-..+..|+.++.+++....+..-.....++++|+.|-+.+|....+... -.+.+.|+.+++..|..+.+.
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~- 362 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG- 362 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-
Confidence 3344444556788888888877655432122334789999999999876554332 346788999999888644332
Q ss_pred ccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCccc-CCcccCCCCCCCeEE
Q 011151 383 NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA-LPDLLLQKTTLQKLL 461 (492)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~ 461 (492)
.+... ...+|.|+.|.+++|..+++..+.. +...-.++..|+.+.+++|+.+++ .-..+..+++|+.++
T Consensus 363 -tL~sl--------s~~C~~lr~lslshce~itD~gi~~-l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 363 -TLASL--------SRNCPRLRVLSLSHCELITDEGIRH-LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred -hHhhh--------ccCCchhccCChhhhhhhhhhhhhh-hhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 12111 2278999999999998777652100 001223567899999999999875 335677889999999
Q ss_pred EeCCCchhhhh
Q 011151 462 IGRCPILEERC 472 (492)
Q Consensus 462 l~~c~~l~~~~ 472 (492)
+.+|..+.+.-
T Consensus 433 l~~~q~vtk~~ 443 (483)
T KOG4341|consen 433 LIDCQDVTKEA 443 (483)
T ss_pred eechhhhhhhh
Confidence 99998766543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.4e-11 Score=117.60 Aligned_cols=215 Identities=25% Similarity=0.311 Sum_probs=157.0
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhc
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEK 151 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~ 151 (492)
-++.+++..+.++|..-.. ..+..-...+++.|. +.. +|..+..+-.|+.+.|+ .|.+..+|..+++
T Consensus 53 g~l~Ls~rrlk~fpr~a~~--~~ltdt~~aDlsrNR---~~e-lp~~~~~f~~Le~liLy-------~n~~r~ip~~i~~ 119 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAAS--YDLTDTVFADLSRNR---FSE-LPEEACAFVSLESLILY-------HNCIRTIPEAICN 119 (722)
T ss_pred cccccccchhhcCCCcccc--ccccchhhhhccccc---ccc-CchHHHHHHHHHHHHHH-------hccceecchhhhh
Confidence 3566677777665543331 256667778888887 666 77778888888989998 8889999999999
Q ss_pred cCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVT 231 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 231 (492)
+..|++|+|+.|+ +..+|..+..|+ |++|-+++|+ ++.+|..++.++.|..|+.+.|.+ ..+|..++.+.+|+.|.
T Consensus 120 L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 120 LEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHH
Confidence 9999999999999 888998888775 8999999998 888999999888999999999966 66778888888888887
Q ss_pred eEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhh
Q 011151 232 KFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEA 311 (492)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~ 311 (492)
+..+.... .+.++..| .|..||+++|++ ..+|..
T Consensus 196 vrRn~l~~----lp~El~~L-----------------------------pLi~lDfScNki-------------s~iPv~ 229 (722)
T KOG0532|consen 196 VRRNHLED----LPEELCSL-----------------------------PLIRLDFSCNKI-------------SYLPVD 229 (722)
T ss_pred Hhhhhhhh----CCHHHhCC-----------------------------ceeeeecccCce-------------eecchh
Confidence 77665543 22332222 456677777763 344556
Q ss_pred cCCCCCccEEEEeecCCCccccCchhhh---ccccccEEEEecc
Q 011151 312 LGPPPNLKELVIDEYRGRRNVVPRNWVM---SLTNLRALLLKNC 352 (492)
Q Consensus 312 l~~~~~L~~L~l~~~~~~~~~l~~~~~~---~l~~L~~L~L~~~ 352 (492)
+..+..|++|.|.+|.... - |..++ ...=.++|+..-|
T Consensus 230 fr~m~~Lq~l~LenNPLqS--P-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQS--P-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCC--C-hHHHHhccceeeeeeecchhc
Confidence 6677777777777777766 2 44443 3333566666666
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=6.6e-10 Score=93.84 Aligned_cols=127 Identities=26% Similarity=0.283 Sum_probs=45.5
Q ss_pred CCCCceEEEeccCCccccccccchhhc-cCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFD-KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~ 172 (492)
++..++.|++.+|.+..++. ++ .+.+|+.|+++ +|.+..+. .+..+++|+.|++++|. ++.+...
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls-------~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLS-------NNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------S-------TT-TT--EEE-T-------TS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECC-------CCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 55667888888877333332 43 46678888888 77777774 46777888888888888 7777554
Q ss_pred h-hcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCcccccc---cccccccccccccceEEe
Q 011151 173 L-CELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYL---PVGIGELINLRRVTKFVV 235 (492)
Q Consensus 173 ~-~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~ 235 (492)
+ ..+++|++|++++|. +..+- ..++.+++|++|++.+|.+...- ...+..+|+|+.|+....
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 4 357888888888887 43322 23567788888888888764331 123556777777765443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=8.2e-10 Score=93.29 Aligned_cols=124 Identities=26% Similarity=0.278 Sum_probs=53.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.+.+.|++.++.+..+.. +. ..+.+|+.|++++|....+.+ +..++.|+.|+++ +|.+..+.+.
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-L~---~~l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~-------~N~I~~i~~~ 82 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-LG---ATLDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLS-------NNRISSISEG 82 (175)
T ss_dssp -----------------S------TT-TT--EEE-TTS--S--TT---------TT--EEE---------SS---S-CHH
T ss_pred cccccccccccccccccc-hh---hhhcCCCEEECCCCCCccccC-----ccChhhhhhcccC-------CCCCCccccc
Confidence 467899999999987432 22 157899999999999444443 7779999999999 9999999765
Q ss_pred h-hccCcCCEEEccCCCCccccc--hhhhcCCCCCeeecCcccccccccc----cccCCCCCcEEecCC
Q 011151 149 I-EKLLHLKYLSLCGQREIEKLP--ETLCELYNLERLNITSCNHLRELPQ----GIGKLRKLMYLDNDD 210 (492)
Q Consensus 149 ~-~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~ 210 (492)
+ ..+++|+.|++++|. +.++. ..+..+++|++|++.+|+.. ..+. .+..+|+|+.||-..
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence 5 468999999999999 66442 35778999999999999944 3332 356899999997643
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=4.9e-10 Score=101.11 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=9.7
Q ss_pred hhhcccCCcceEecccccC
Q 011151 274 AELEKKKNLVELGLHFDRL 292 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l 292 (492)
..+..|++|+.|++..|.|
T Consensus 207 eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred HHHHhCCcceeeecccchh
Confidence 3445555555555555543
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.87 E-value=1.5e-10 Score=106.77 Aligned_cols=268 Identities=17% Similarity=0.126 Sum_probs=178.4
Q ss_pred CCCCeeecCcccccc--cccccccCCCCCcEEecCCCccccc-ccccc-cccccccccceEEeecccCCCcCcc-ccccc
Q 011151 177 YNLERLNITSCNHLR--ELPQGIGKLRKLMYLDNDDTWFLRY-LPVGI-GELINLRRVTKFVVGGGYDRARSLG-SLKKL 251 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L 251 (492)
..|+.|.++++.... .+-.....++++++|++.+|...+. .-..+ ..+++|+++.+..+.... ...+. ....+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT--~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT--DVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH--HHHHHHHHHhh
Confidence 468999999987544 2333456899999999999853322 11122 367788888877654332 11222 23445
Q ss_pred cccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcc
Q 011151 252 NLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN 331 (492)
Q Consensus 252 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 331 (492)
++|..+.+.++..+.. ........++..++.+...++. +.....+...-..++.+.++++..|...++
T Consensus 216 ~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~----------e~~le~l~~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCL----------ELELEALLKAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred hhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccc----------cccHHHHHHHhccChHhhccchhhhccccc
Confidence 6666777777665543 1222446677777777666654 112334444455677788888878766553
Q ss_pred ccCchhhhccccccEEEEecccCCCcCCC---CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceec
Q 011151 332 VVPRNWVMSLTNLRALLLKNCRNCEHLPP---LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKF 408 (492)
Q Consensus 332 ~l~~~~~~~l~~L~~L~L~~~~~~~~~~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 408 (492)
.--...-..+..|+.|..++|...++.+. ..+.++|+.|.+..|+.+++.+-...+. .++.|+.+++
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r----------n~~~Le~l~~ 353 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR----------NCPHLERLDL 353 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc----------CChhhhhhcc
Confidence 10011122688999999999977666443 4578999999999999877766555544 7899999999
Q ss_pred cCcccccccccCccccccccCCCCcceEeecCCCCcccC-----CcccCCCCCCCeEEEeCCCchhhhh
Q 011151 409 YDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKAL-----PDLLLQKTTLQKLLIGRCPILEERC 472 (492)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~l~~l~~L~~L~l~~c~~l~~~~ 472 (492)
..|.-..+-.+ ...-.++|.|++|.++.|..+++. ...-.+...|+.+.+++||.+++..
T Consensus 354 e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 354 EECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred cccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 98875544322 223348999999999999988864 3444567899999999999988764
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=3.4e-10 Score=102.08 Aligned_cols=260 Identities=21% Similarity=0.217 Sum_probs=155.0
Q ss_pred chhhccCcCCEEEccCCCCcc-----ccchhhhcCCCCCeeecCccc---ccccccc-------cccCCCCCcEEecCCC
Q 011151 147 TNIEKLLHLKYLSLCGQREIE-----KLPETLCELYNLERLNITSCN---HLRELPQ-------GIGKLRKLMYLDNDDT 211 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~---~~~~lp~-------~~~~l~~L~~L~l~~~ 211 (492)
+.......++++++++|. ++ .+...+.+.+.|+..++++-. ....+|. .+..+++|++|++|+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 335567889999999998 54 234446677889999888643 1113333 3457889999999999
Q ss_pred ccccccccc----ccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEec
Q 011151 212 WFLRYLPVG----IGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGL 287 (492)
Q Consensus 212 ~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 287 (492)
-+....+.. +..+..|++|.+.++.........++ +.|..|. ......+.++|+.+.+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~----------------~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA----------------VNKKAASKPKLRVFIC 164 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH----------------HHhccCCCcceEEEEe
Confidence 764443322 45677888888877766531111111 1111111 1133556679999999
Q ss_pred ccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc--CchhhhccccccEEEEecccCCCcC----C-C
Q 011151 288 HFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV--PRNWVMSLTNLRALLLKNCRNCEHL----P-P 360 (492)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l--~~~~~~~l~~L~~L~L~~~~~~~~~----~-~ 360 (492)
..|++.+.. ....-..+...+.|+.+.++.|.+....+ -...+.++++|+.|+|.+|.+...- . .
T Consensus 165 ~rNrlen~g--------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 165 GRNRLENGG--------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred ecccccccc--------HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 999876543 24445566777899999999988765321 0223558999999999998765432 1 2
Q ss_pred CCCCCccceeeccccccceeec-ccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeec
Q 011151 361 LGKLPSLESLYIEGMQSVKRVG-NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEIS 439 (492)
Q Consensus 361 l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 439 (492)
+..+++|++|++++|- ++.-+ ..+... .....|+|+.|.+.+|.--.+-. ..+...+...|.|+.|.|+
T Consensus 237 L~s~~~L~El~l~dcl-l~~~Ga~a~~~a-------l~~~~p~L~vl~l~gNeIt~da~--~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCL-LENEGAIAFVDA-------LKESAPSLEVLELAGNEITRDAA--LALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hcccchheeecccccc-cccccHHHHHHH-------HhccCCCCceeccCcchhHHHHH--HHHHHHHhcchhhHHhcCC
Confidence 6677888888888886 32221 111110 01145666666666654111110 0111233346667777776
Q ss_pred CCCC
Q 011151 440 GCCK 443 (492)
Q Consensus 440 ~c~~ 443 (492)
+|..
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 6543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=5.8e-09 Score=102.71 Aligned_cols=198 Identities=32% Similarity=0.341 Sum_probs=131.3
Q ss_pred EEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccC-cCCEEEccCCCCccccchhhhcCCC
Q 011151 100 SLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLL-HLKYLSLCGQREIEKLPETLCELYN 178 (492)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~ 178 (492)
.+....+. +.. -......++.+..|++. ++.+.+++.....+. +|+.|++++|. +..+|..+..+++
T Consensus 97 ~l~~~~~~---~~~-~~~~~~~~~~l~~L~l~-------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNR---LRS-NISELLELTNLTSLDLD-------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPN 164 (394)
T ss_pred eeeccccc---ccc-CchhhhcccceeEEecC-------CcccccCccccccchhhcccccccccc-hhhhhhhhhcccc
Confidence 46666665 322 12224555788999998 888999888777774 89999999998 8888777889999
Q ss_pred CCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCce
Q 011151 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECS 258 (492)
Q Consensus 179 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~ 258 (492)
|+.|++++|. +..+|...+.+++|+.|+++++.+ ..+|..+.....|+.+.+..+.... .+..
T Consensus 165 L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~----~~~~----------- 227 (394)
T COG4886 165 LKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIE----LLSS----------- 227 (394)
T ss_pred ccccccCCch-hhhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCccee----cchh-----------
Confidence 9999999998 778887666888999999999866 5666665556667887777663111 1122
Q ss_pred EecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhh
Q 011151 259 IRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWV 338 (492)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~ 338 (492)
+....++..+.+..|.+. ..+..+..+++++.|++++|.+.. + +. +
T Consensus 228 -----------------~~~~~~l~~l~l~~n~~~-------------~~~~~~~~l~~l~~L~~s~n~i~~--i-~~-~ 273 (394)
T COG4886 228 -----------------LSNLKNLSGLELSNNKLE-------------DLPESIGNLSNLETLDLSNNQISS--I-SS-L 273 (394)
T ss_pred -----------------hhhcccccccccCCceee-------------eccchhccccccceeccccccccc--c-cc-c
Confidence 222233333333334321 113344555667777777776666 4 32 6
Q ss_pred hccccccEEEEecccCCCcCCC
Q 011151 339 MSLTNLRALLLKNCRNCEHLPP 360 (492)
Q Consensus 339 ~~l~~L~~L~L~~~~~~~~~~~ 360 (492)
..+.+++.|+++++.....++.
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccCccCEEeccCccccccchh
Confidence 6777777777777766555444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.7e-09 Score=95.59 Aligned_cols=223 Identities=17% Similarity=0.093 Sum_probs=118.5
Q ss_pred CCCCceEEEeccCCc-----cccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccc
Q 011151 94 GLRGLRSLLVESDDY-----SWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~ 168 (492)
.+..|..|.+++... +.....+|-.+..+++|+.+.++ .+....+......-+.|+.+..+++. +..
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s-------~~~~~~i~~~~~~kptl~t~~v~~s~-~~~ 251 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFS-------ALSTENIVDIELLKPTLQTICVHNTT-IQD 251 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeee-------ccchhheeceeecCchhheeeeeccc-ccc
Confidence 456677777666432 11112233233445555666655 44444433322333456666665554 333
Q ss_pred cchhhhcCCCCCeeecCccc-ccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccc
Q 011151 169 LPETLCELYNLERLNITSCN-HLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGS 247 (492)
Q Consensus 169 lp~~~~~l~~L~~L~l~~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 247 (492)
.|. +-....+.-+....-. ..+..-..+-.++.|+++|+++|.+ ..+..+..-++.++.|+++.+.... +
T Consensus 252 ~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~-----v-- 322 (490)
T KOG1259|consen 252 VPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT-----V-- 322 (490)
T ss_pred ccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceee-----e--
Confidence 322 1111111111111100 0111112233455666777777644 3334444445555555555443321 1
Q ss_pred cccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecC
Q 011151 248 LKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYR 327 (492)
Q Consensus 248 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 327 (492)
..+..+++|+.|++++|.++ .....-.++.+.+.|.+++|.
T Consensus 323 --------------------------~nLa~L~~L~~LDLS~N~Ls-------------~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 323 --------------------------QNLAELPQLQLLDLSGNLLA-------------ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred --------------------------hhhhhcccceEeecccchhH-------------hhhhhHhhhcCEeeeehhhhh
Confidence 12445567788888887742 222222346678888888888
Q ss_pred CCccccCchhhhccccccEEEEecccCCC--cCCCCCCCCccceeeccccc
Q 011151 328 GRRNVVPRNWVMSLTNLRALLLKNCRNCE--HLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 328 ~~~~~l~~~~~~~l~~L~~L~L~~~~~~~--~~~~l~~l~~L~~L~l~~~~ 376 (492)
+.. .+.+..+.+|.+|++++|++.. ....++++|.|+++.+.+|+
T Consensus 364 iE~----LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 364 IET----LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Hhh----hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777 4667788888888888887643 34558888888888888887
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7e-10 Score=102.92 Aligned_cols=205 Identities=18% Similarity=0.066 Sum_probs=113.1
Q ss_pred cCCeeeEEecchhhhhhccccccccCc--hhhccCcCCEEEccCCCCcc---ccchhhhcCCCCCeeecCcccccccccc
Q 011151 121 KLTCLRALKLEVRQRWLCKNFIKKIPT--NIEKLLHLKYLSLCGQREIE---KLPETLCELYNLERLNITSCNHLRELPQ 195 (492)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~~l~~--~~~~l~~L~~L~L~~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 195 (492)
+++.|+...|. ++.+...+. ....|++++.|+|+.|- +. .+......+++|+.|+++.|.+..-...
T Consensus 119 n~kkL~~IsLd-------n~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 119 NLKKLREISLD-------NYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hHHhhhheeec-------CccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 46677777777 666666653 56677888888888776 33 2333356678888888887773221111
Q ss_pred c-ccCCCCCcEEecCCCcccccccc-cccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhH
Q 011151 196 G-IGKLRKLMYLDNDDTWFLRYLPV-GIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARR 273 (492)
Q Consensus 196 ~-~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~ 273 (492)
. ...++.|+.|.++.|.+...-.. .+..+++|..|.+..+.... . ...
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--~-~~~--------------------------- 240 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--I-KAT--------------------------- 240 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--e-ecc---------------------------
Confidence 1 12466777777777766543222 23456667776666553110 0 000
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchh-----hhccccccEEE
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNW-----VMSLTNLRALL 348 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~-----~~~l~~L~~L~ 348 (492)
...-+..|+.|++++|.+.+.+ .....+.++.|..|+++.+.+..-.+ |+. ...+++|++|+
T Consensus 241 -~~~i~~~L~~LdLs~N~li~~~-----------~~~~~~~l~~L~~Lnls~tgi~si~~-~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 241 -STKILQTLQELDLSNNNLIDFD-----------QGYKVGTLPGLNQLNLSSTGIASIAE-PDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred -hhhhhhHHhhccccCCcccccc-----------cccccccccchhhhhccccCcchhcC-CCccchhhhcccccceeee
Confidence 1112335666666666643221 12334556666666666666555323 222 23567777777
Q ss_pred EecccCCC--cCCCCCCCCccceeeccccc
Q 011151 349 LKNCRNCE--HLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 349 L~~~~~~~--~~~~l~~l~~L~~L~l~~~~ 376 (492)
+..|++.+ .+..+..+++|+.|.+..+.
T Consensus 308 i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 308 ISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccCccccccccchhhccchhhhhhccccc
Confidence 77776532 33335556666666665544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.4e-09 Score=100.91 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCCceEEEeccCCccccccccc--hhhccCCeeeEEecchhhhhhcccccccc---CchhhccCcCCEEEccCCCCccc
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLP--QLFDKLTCLRALKLEVRQRWLCKNFIKKI---PTNIEKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~l~~L~~L~L~~~~~~~~ 168 (492)
++++|+...+..++ +.. .+ +....|++++.|||+ .+.+... ......+++|+.|+++.|.+.--
T Consensus 119 n~kkL~~IsLdn~~---V~~-~~~~~~~k~~~~v~~LdLS-------~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYR---VED-AGIEEYSKILPNVRDLDLS-------RNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hHHhhhheeecCcc---ccc-cchhhhhhhCCcceeecch-------hhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 55556666665554 222 11 234556666666666 4444331 12234556666666666652111
Q ss_pred cch-hhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 169 LPE-TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 169 lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
..+ .-..+.+|+.|.++.|.+.. .+-..+..+|+|+.|++.+|...........-+..|+.|+++.+...
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 111 11235556666666665322 12222335566666666665321111112233455566666555443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.5e-09 Score=95.89 Aligned_cols=126 Identities=22% Similarity=0.242 Sum_probs=57.6
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcC
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCEL 176 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 176 (492)
.|+.+++++|. ++. +.+..+-.|.+|+|+++ .|.+..+- ++..+++|+.|+|++|. +..+-.+-.++
T Consensus 285 ~LtelDLS~N~---I~~-iDESvKL~Pkir~L~lS-------~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 285 ELTELDLSGNL---ITQ-IDESVKLAPKLRRLILS-------QNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKL 351 (490)
T ss_pred hhhhccccccc---hhh-hhhhhhhccceeEEecc-------ccceeeeh-hhhhcccceEeecccch-hHhhhhhHhhh
Confidence 34555555554 322 23333444455555555 44444442 24445555555555554 44443333344
Q ss_pred CCCCeeecCcccccccccccccCCCCCcEEecCCCccccc-ccccccccccccccceEEeec
Q 011151 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRY-LPVGIGELINLRRVTKFVVGG 237 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 237 (492)
.+.+.|.++.|. ++.+ .+++++.+|..||+++|++... ....+++++.|+++.+.+++.
T Consensus 352 GNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 352 GNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 455555555554 3333 2344455555555555544211 112345555555555554443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=2.4e-10 Score=109.29 Aligned_cols=130 Identities=27% Similarity=0.342 Sum_probs=70.3
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++..|+.++++.|+ ++. +|..+..++ |++|-++ ++.++.+|..++.+..|..|+.+.|. +..+|+.+
T Consensus 119 ~L~~lt~l~ls~Nq---lS~-lp~~lC~lp-Lkvli~s-------NNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql 185 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQ---LSH-LPDGLCDLP-LKVLIVS-------NNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQL 185 (722)
T ss_pred hhhHHHHhhhccch---hhc-CChhhhcCc-ceeEEEe-------cCccccCCcccccchhHHHhhhhhhh-hhhchHHh
Confidence 44444444444444 333 344344444 5555555 55555555555555555555555555 55555555
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeeccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGY 239 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 239 (492)
+.+.+|+.|+++.|+ +..+|..+. .-.|..||++.|++ ..+|..+.+|..|+.|-+.+|....
T Consensus 186 ~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScNki-s~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCNKI-SYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccCce-eecchhhhhhhhheeeeeccCCCCC
Confidence 555556666655555 455555554 33455566665544 4556666666666666666555443
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.7e-09 Score=94.26 Aligned_cols=167 Identities=22% Similarity=0.205 Sum_probs=108.3
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEeccc
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR 353 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~ 353 (492)
..+..|.+|+.+.+.++.+ ++.+...+++-.+|+.|+++.+.+.+..-..-.+.+|+.|..|+|++|.
T Consensus 204 ~iLs~C~kLk~lSlEg~~L------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRL------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHHHhhhhcccccccc------------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 5577788888888888873 4556667778888888888888766521102234588888888888886
Q ss_pred CCCcCC-C-C-CCCCccceeeccccccc-eeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccC
Q 011151 354 NCEHLP-P-L-GKLPSLESLYIEGMQSV-KRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIII 429 (492)
Q Consensus 354 ~~~~~~-~-l-~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 429 (492)
..++.- . . .--++|..|+|++|... ..-..... ...+|+|..|++++|..++.-.+ ..+..
T Consensus 272 l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL----------~~rcp~l~~LDLSD~v~l~~~~~-----~~~~k 336 (419)
T KOG2120|consen 272 LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL----------VRRCPNLVHLDLSDSVMLKNDCF-----QEFFK 336 (419)
T ss_pred ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH----------HHhCCceeeeccccccccCchHH-----HHHHh
Confidence 554321 1 1 11357888888877521 11000111 22678888888888877766443 34557
Q ss_pred CCCcceEeecCCCCcc-cCCcccCCCCCCCeEEEeCCCc
Q 011151 430 MPRLSFLEISGCCKLK-ALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 430 ~~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
|+.|++|.++.|-.+. .....+...|+|.+|++.||-.
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 8888888888886653 1113456678888888888764
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=4.5e-08 Score=96.40 Aligned_cols=177 Identities=27% Similarity=0.317 Sum_probs=132.3
Q ss_pred CCCCceEEEeccCCccccccccchhhccCC-eeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLT-CLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~ 172 (492)
..+.++.|.+.++. +.. ++......+ +|+.|+++ ++.+..+|..+..+++|+.|++++|. +.++|..
T Consensus 114 ~~~~l~~L~l~~n~---i~~-i~~~~~~~~~nL~~L~l~-------~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 114 ELTNLTSLDLDNNN---ITD-IPPLIGLLKSNLKELDLS-------DNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred cccceeEEecCCcc---ccc-Cccccccchhhccccccc-------ccchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 66789999999998 555 444355563 89999999 99999998888999999999999999 9999887
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
.+.++.|+.|++++|. +..+|..+.....|++|.++++.. ...+..+.++.++..+.+..+.... ....+..+.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~----~~~~~~~l~ 255 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLED----LPESIGNLS 255 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeee----ccchhcccc
Confidence 7789999999999999 888888666777799999999853 4556667788888888766655432 133444444
Q ss_pred ccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCC
Q 011151 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRD 294 (492)
Q Consensus 253 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 294 (492)
.++.+.+........ ..+....+++.++++++.+..
T Consensus 256 ~l~~L~~s~n~i~~i------~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 256 NLETLDLSNNQISSI------SSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccceecccccccccc------ccccccCccCEEeccCccccc
Confidence 455554443322111 126778899999999988543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.56 E-value=1.6e-07 Score=97.16 Aligned_cols=105 Identities=22% Similarity=0.363 Sum_probs=87.2
Q ss_pred eeeEEecchhhhhhcccccc-ccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCC
Q 011151 124 CLRALKLEVRQRWLCKNFIK-KIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRK 202 (492)
Q Consensus 124 ~L~~L~L~~~~~~~~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 202 (492)
.++.|+|+ ++.+. .+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+...+|..++++++
T Consensus 419 ~v~~L~L~-------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLD-------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECC-------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 47889998 66664 67888999999999999999966689988999999999999999977789999999999
Q ss_pred CcEEecCCCccccccccccccc-ccccccceEEe
Q 011151 203 LMYLDNDDTWFLRYLPVGIGEL-INLRRVTKFVV 235 (492)
Q Consensus 203 L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 235 (492)
|++|++++|.+.+.+|..+... .++..+++..+
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 9999999999888888877653 34455555544
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.2e-09 Score=92.51 Aligned_cols=118 Identities=20% Similarity=0.199 Sum_probs=69.3
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCC-CCCccEEEEeecCCCc--cccCchhhhccccccEEEEe
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGP-PPNLKELVIDEYRGRR--NVVPRNWVMSLTNLRALLLK 350 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~--~~l~~~~~~~l~~L~~L~L~ 350 (492)
..+.+|+.|..|+++|+.+.. ..+-..... -++|..|+++|+.-.- ..+ ......+++|..|||+
T Consensus 254 ll~~scs~L~~LNlsWc~l~~-----------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFT-----------EKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLS 321 (419)
T ss_pred HHHHhhhhHhhcCchHhhccc-----------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccc
Confidence 346677778888888777421 111111122 2567777877764221 112 2233478888888888
Q ss_pred cccCCCc-C-CCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccc
Q 011151 351 NCRNCEH-L-PPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEEL 414 (492)
Q Consensus 351 ~~~~~~~-~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 414 (492)
+|..... . ..+..++.|++|.++.|..+ +++.+.. ....|+|.+|++.+|-.-
T Consensus 322 D~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~---------l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 322 DSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE---------LNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred cccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee---------eccCcceEEEEeccccCc
Confidence 8765554 1 22667788888888888743 2232322 227788888888876533
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=2.2e-07 Score=96.04 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=79.6
Q ss_pred cCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceE
Q 011151 154 HLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKF 233 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 233 (492)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+...+|..++.+++|+.|++++|.+.+.+|..++++++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999667899999999999999999999777899999999999999999999988999999999999999999
Q ss_pred EeecccCCC
Q 011151 234 VVGGGYDRA 242 (492)
Q Consensus 234 ~~~~~~~~~ 242 (492)
.+.....++
T Consensus 499 ~N~l~g~iP 507 (623)
T PLN03150 499 GNSLSGRVP 507 (623)
T ss_pred CCcccccCC
Confidence 887764333
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.9e-07 Score=63.71 Aligned_cols=56 Identities=30% Similarity=0.605 Sum_probs=26.9
Q ss_pred cCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCC
Q 011151 154 HLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 211 (492)
+|++|++++|. +..+|. .+..+++|++|++++|. +..++ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555554 444443 34445555555555555 23322 33455555555555555
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=5.7e-07 Score=62.20 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=23.2
Q ss_pred cccccccCc-hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCccc
Q 011151 139 KNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCN 188 (492)
Q Consensus 139 ~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 188 (492)
++.+..+|. .+.++++|++|++++|. +..+++ .+..+++|++|++++|+
T Consensus 10 ~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 10 NNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 444444442 34445555555555554 444432 34455555555555443
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=8.1e-08 Score=94.81 Aligned_cols=237 Identities=27% Similarity=0.263 Sum_probs=139.6
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.+..++.+.+..+. +.. ....+..+++|..|++. ++.+..+...+..+++|++|++++|. ++.+. .+
T Consensus 70 ~l~~l~~l~l~~n~---i~~-~~~~l~~~~~l~~l~l~-------~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL---IAK-ILNHLSKLKSLEALDLY-------DNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GL 136 (414)
T ss_pred HhHhHHhhccchhh---hhh-hhcccccccceeeeecc-------ccchhhcccchhhhhcchheeccccc-ccccc-ch
Confidence 45566666666665 333 22336777888888888 88888876557788889999998888 77774 46
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccc-ccccccccccccceEEeecccCCCcCcccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
..+..|+.|++.+|. +..+.. +..+++|+.+++++|.+...-+ . +..+.+++.+.+..+.... ...+.....+.
T Consensus 137 ~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~ 211 (414)
T KOG0531|consen 137 STLTLLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLV 211 (414)
T ss_pred hhccchhhheeccCc-chhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHH
Confidence 777788888988888 555543 5668888888888887644333 1 4667778877777765543 22222222222
Q ss_pred cc--CCceEecCCCCCChhhhhHhhhcccC--CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCC
Q 011151 253 LL--RECSIRGLGGVSDAGEARRAELEKKK--NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRG 328 (492)
Q Consensus 253 ~L--~~l~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 328 (492)
.+ +.-.+..+.. +.... +|+.+.+.+|.+.. .+..+..+..+..+++..+..
T Consensus 212 ~~~l~~n~i~~~~~-----------l~~~~~~~L~~l~l~~n~i~~-------------~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 212 LLSLLDNKISKLEG-----------LNELVMLHLRELYLSGNRISR-------------SPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred HhhcccccceeccC-----------cccchhHHHHHHhcccCcccc-------------ccccccccccccccchhhccc
Confidence 12 1111111111 11112 36777777776321 114455566777777776665
Q ss_pred CccccCchhhhccccccEEEEecccCCCc---C--CCCCCCCccceeeccccc
Q 011151 329 RRNVVPRNWVMSLTNLRALLLKNCRNCEH---L--PPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 329 ~~~~l~~~~~~~l~~L~~L~L~~~~~~~~---~--~~l~~l~~L~~L~l~~~~ 376 (492)
.. ...+...+.+..+....+..... . +..+..+.++..++..+.
T Consensus 268 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 268 SN----LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred cc----cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 55 23344455555555555543321 1 114445666666666554
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=2.3e-07 Score=91.62 Aligned_cols=108 Identities=28% Similarity=0.361 Sum_probs=79.0
Q ss_pred ccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccC
Q 011151 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGK 199 (492)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 199 (492)
..+..++.+.++ .+.+..+-..+..+.+|++|++.+|. +..+...+..+++|++|++++|. +..+. .+..
T Consensus 69 ~~l~~l~~l~l~-------~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~ 138 (414)
T KOG0531|consen 69 ESLTSLKELNLR-------QNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLST 138 (414)
T ss_pred HHhHhHHhhccc-------hhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhh
Confidence 345566667777 77777755557888999999999998 77775547789999999999998 56554 3677
Q ss_pred CCCCcEEecCCCcccccccccccccccccccceEEeeccc
Q 011151 200 LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGY 239 (492)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 239 (492)
++.|+.|++++|.+... ..+..+..|+.+++.++....
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred ccchhhheeccCcchhc--cCCccchhhhcccCCcchhhh
Confidence 78899999999866332 234446777777777776553
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=3.1e-06 Score=87.47 Aligned_cols=135 Identities=21% Similarity=0.095 Sum_probs=78.9
Q ss_pred CcCCEEEccCCCCcc-ccchhhh-cCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 153 LHLKYLSLCGQREIE-KLPETLC-ELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~-~lp~~~~-~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
.+|++|+++|...+. ..|..++ .+|+|+.|.+++-.+.. .+-....++++|..||++++++... .++..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 567777777755332 3444444 47788888887754322 3334455778888888888765322 56677777777
Q ss_pred cceEEeecccCCCcCccccccccccCCceEecCCCCCCh--hhhhHhhhcccCCcceEeccccc
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDA--GEARRAELEKKKNLVELGLHFDR 291 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~ 291 (492)
|.+.+..... ...+..+-.|++|+.|+++........ ...+.+.-..+|+|+.||.+++.
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7766555443 344555556666666666554433322 12223344456677777776655
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=1e-05 Score=51.25 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=16.2
Q ss_pred cCCEEEccCCCCccccchhhhcCCCCCeeecCccc
Q 011151 154 HLKYLSLCGQREIEKLPETLCELYNLERLNITSCN 188 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 188 (492)
+|++|++++|. ++++|+.+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 44555555555 44454444555555555555554
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=7.5e-06 Score=71.97 Aligned_cols=154 Identities=20% Similarity=0.062 Sum_probs=87.9
Q ss_pred hhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC---chhhhccccccEEEEec
Q 011151 275 ELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP---RNWVMSLTNLRALLLKN 351 (492)
Q Consensus 275 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~---~~~~~~l~~L~~L~L~~ 351 (492)
....-|.|+.+.+..|++..++. ......+....+|+.+.+..|.+....+. -..+..+.+|+.|+|++
T Consensus 152 Kaa~kp~Le~vicgrNRlengs~--------~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 152 KAADKPKLEVVICGRNRLENGSK--------ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred hhccCCCceEEEeccchhccCcH--------HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 35566789999998888655432 22223344456899999998886543220 01233788999999999
Q ss_pred ccCCCcCC----C-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccc-
Q 011151 352 CRNCEHLP----P-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKG- 425 (492)
Q Consensus 352 ~~~~~~~~----~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~- 425 (492)
|.++..-. . +...+.|++|.+..|-.-......++..- .-..+|+|..|...+...-........+|.
T Consensus 224 Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f------~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~ 297 (388)
T COG5238 224 NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF------NEKFVPNLMPLPGDYNERRGGIILDISLNEF 297 (388)
T ss_pred cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh------hhhcCCCccccccchhhhcCceeeeechhhh
Confidence 86654321 1 56677789999998862222222221100 011467777777666432111111111111
Q ss_pred cccCCCCcceEeecCCC
Q 011151 426 EIIIMPRLSFLEISGCC 442 (492)
Q Consensus 426 ~~~~~~~L~~L~l~~c~ 442 (492)
....+|-|..|.+.||.
T Consensus 298 e~~~~p~L~~le~ngNr 314 (388)
T COG5238 298 EQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhcccHHHHHHHHccCc
Confidence 23467888888888743
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.5e-05 Score=50.43 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=31.7
Q ss_pred CeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccch
Q 011151 123 TCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPE 171 (492)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~ 171 (492)
++|++|+++ ++.+.++|..+.++++|++|++++|. +++++.
T Consensus 1 ~~L~~L~l~-------~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-------NNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEET-------SSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEcc-------CCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 468888888 88888888778888899999998888 666653
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=1.3e-05 Score=71.37 Aligned_cols=206 Identities=13% Similarity=0.015 Sum_probs=97.2
Q ss_pred ccCcCCEEEccCCCCcc---ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccc-cccccccccc
Q 011151 151 KLLHLKYLSLCGQREIE---KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRY-LPVGIGELIN 226 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~ 226 (492)
.++.++.++|.+|. +. ++...+.+++.|++|+++.|.....+...-....+|++|-+.|..+... ....+..++.
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34566666666666 33 2333345666666666666653222111112234566666666544322 2223445555
Q ss_pred ccccceEEeeccc--CCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhh
Q 011151 227 LRRVTKFVVGGGY--DRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRE 304 (492)
Q Consensus 227 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 304 (492)
+++|.++.+.... ......... -+.++.++...|.... .........-+|++..+-+..+.+++
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~--s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~sv~v~e~PlK~---------- 213 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDW--STEVLTLHQLPCLEQL--WLNKNKLSRIFPNVNSVFVCEGPLKT---------- 213 (418)
T ss_pred hhhhhhccchhhhhcccccccccc--chhhhhhhcCCcHHHH--HHHHHhHHhhcccchheeeecCcccc----------
Confidence 5665555442110 000000000 0011112222111000 00001122345666667676666532
Q ss_pred HHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-------CCCCCccceeecc
Q 011151 305 SERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-------LGKLPSLESLYIE 373 (492)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-------l~~l~~L~~L~l~ 373 (492)
.........+|.+.-|+|+.+++....- ...+..+++|+.|.++.+.+.+.+.. ++++++++.|+=+
T Consensus 214 -~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 214 -ESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred -hhhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 2223344556666677777776655322 34456788888888888776655432 4567777776543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=4.2e-07 Score=90.01 Aligned_cols=130 Identities=20% Similarity=0.219 Sum_probs=102.1
Q ss_pred ccccCccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccc
Q 011151 63 INSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFI 142 (492)
Q Consensus 63 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 142 (492)
.+..| .++..++.++|.+.....++- -++.+++|++++|. +.. .. ++..++.|++|||+ .|.+
T Consensus 159 ns~~W-n~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk---~~~-v~-~Lr~l~~LkhLDls-------yN~L 221 (1096)
T KOG1859|consen 159 NSPVW-NKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNK---FTK-VD-NLRRLPKLKHLDLS-------YNCL 221 (1096)
T ss_pred cchhh-hhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhh---hhh-hH-HHHhcccccccccc-------cchh
Confidence 33445 688889999998876555554 78999999999998 555 33 48999999999999 8999
Q ss_pred cccCch-hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccc--cccccccCCCCCcEEecCCCcc
Q 011151 143 KKIPTN-IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR--ELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 143 ~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
..+|.. ..++. |..|.+++|. ++++ ..+.++.+|+.||+++|-+.. .+ .-++.+..|+.|.+.||.+
T Consensus 222 ~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 222 RHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCcc
Confidence 888853 44554 9999999999 8877 468999999999999997433 22 1256778899999999865
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00018 Score=68.75 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=48.0
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEeccc
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR 353 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~ 353 (492)
..+..+++++.|+++.|.++. +| .-+++|++|.+++|..... + |..+ .++|++|++++|.
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~s-------------LP---~LP~sLtsL~Lsnc~nLts-L-P~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIES-------------LP---VLPNELTEITIENCNNLTT-L-PGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcc-------------cC---CCCCCCcEEEccCCCCccc-C-Cchh--hhhhhheEccCcc
Confidence 335567888889988887431 22 1234788888887665442 4 5443 3678888888885
Q ss_pred CCCcCCCCCCCCccceeeccc
Q 011151 354 NCEHLPPLGKLPSLESLYIEG 374 (492)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~l~~ 374 (492)
....+| +.|+.|++..
T Consensus 106 ~L~sLP-----~sLe~L~L~~ 121 (426)
T PRK15386 106 EISGLP-----ESVRSLEIKG 121 (426)
T ss_pred cccccc-----cccceEEeCC
Confidence 444443 2566666654
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=1.8e-06 Score=85.77 Aligned_cols=85 Identities=24% Similarity=0.238 Sum_probs=36.9
Q ss_pred chhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCcccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
.++.-++.|+.|+|++|. +...- .+..|++|++||+++|. +..+|.. ...|. |+.|++++|.+. .+ .++.++.
T Consensus 181 ~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHH-hh-hhHHhhh
Confidence 333444455555555555 33331 34455555555555554 4444431 11222 555555544321 11 2344445
Q ss_pred cccccceEEeec
Q 011151 226 NLRRVTKFVVGG 237 (492)
Q Consensus 226 ~L~~L~l~~~~~ 237 (492)
+|+.|+++.|..
T Consensus 255 sL~~LDlsyNll 266 (1096)
T KOG1859|consen 255 SLYGLDLSYNLL 266 (1096)
T ss_pred hhhccchhHhhh
Confidence 555555544433
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=6.3e-06 Score=64.82 Aligned_cols=83 Identities=30% Similarity=0.370 Sum_probs=43.0
Q ss_pred ccCCeeeEEecchhhhhhccccccccCchhh-ccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccccc
Q 011151 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIE-KLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIG 198 (492)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 198 (492)
.....|...+|+ +|.+..+|+.+. ..+.++.|++++|. +.++|..+..++.|+.|+++.|. +...|..+.
T Consensus 50 ~~~~el~~i~ls-------~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~ 120 (177)
T KOG4579|consen 50 SKGYELTKISLS-------DNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIA 120 (177)
T ss_pred hCCceEEEEecc-------cchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHH
Confidence 334445555555 555555554433 23355555555555 55555555555555555555555 444454444
Q ss_pred CCCCCcEEecCCC
Q 011151 199 KLRKLMYLDNDDT 211 (492)
Q Consensus 199 ~l~~L~~L~l~~~ 211 (492)
.+.+|-.|+.-++
T Consensus 121 ~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 121 PLIKLDMLDSPEN 133 (177)
T ss_pred HHHhHHHhcCCCC
Confidence 4555555555444
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.68 E-value=2.8e-05 Score=68.49 Aligned_cols=92 Identities=22% Similarity=0.118 Sum_probs=55.3
Q ss_pred hcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh-----ccccccEEEEe
Q 011151 276 LEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM-----SLTNLRALLLK 350 (492)
Q Consensus 276 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~-----~l~~L~~L~L~ 350 (492)
+..+++|+.|++..|.|+-. ....+...+..++.|+.|.+..|-...... .+.+. ..++|..|...
T Consensus 210 l~y~~~LevLDlqDNtft~~--------gS~~La~al~~W~~lrEL~lnDClls~~G~-~~v~~~f~e~~~p~l~~L~~~ 280 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLE--------GSRYLADALCEWNLLRELRLNDCLLSNEGV-KSVLRRFNEKFVPNLMPLPGD 280 (388)
T ss_pred HHHhCcceeeeccccchhhh--------hHHHHHHHhcccchhhhccccchhhccccH-HHHHHHhhhhcCCCccccccc
Confidence 55677888888888875421 233444556667778888888776655332 22222 56777777777
Q ss_pred cccCCCc------CCC--CCCCCccceeeccccc
Q 011151 351 NCRNCEH------LPP--LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 351 ~~~~~~~------~~~--l~~l~~L~~L~l~~~~ 376 (492)
+|..... ++. -..+|-|..|.+.+|+
T Consensus 281 Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 281 YNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 7754332 122 2356666666666665
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=3.7e-05 Score=79.64 Aligned_cols=149 Identities=23% Similarity=0.251 Sum_probs=97.7
Q ss_pred cceEEEEEEeecCCC--cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC
Q 011151 69 KKILHLLLTLHRGAS--VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 146 (492)
.++++|++++...-. -+..+. .-+|.|++|.+.+-... .+..-....++++|+.||+| ++.+..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig---~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS-------~TnI~nl- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG---TMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDIS-------GTNISNL- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh---hhCcccceEEecCceec--chhHHHHhhccCccceeecC-------CCCccCc-
Confidence 577888887754332 112222 25899999999885521 11133445789999999999 8888888
Q ss_pred chhhccCcCCEEEccCCCCccc--cchhhhcCCCCCeeecCcccccccc--cc----cccCCCCCcEEecCCCccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEK--LPETLCELYNLERLNITSCNHLREL--PQ----GIGKLRKLMYLDNDDTWFLRYLP 218 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~l--p~----~~~~l~~L~~L~l~~~~~~~~~~ 218 (492)
..++++++|+.|.+++=. +.. --..+.++++|++||+|.......- .. --..||+|+.||.+++.+.+.+.
T Consensus 189 ~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 678899999999988876 432 2235778999999999987633211 11 11358899999999987755443
Q ss_pred cc-ccccccccccc
Q 011151 219 VG-IGELINLRRVT 231 (492)
Q Consensus 219 ~~-l~~l~~L~~L~ 231 (492)
.. +...++|+...
T Consensus 268 e~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 268 EELLNSHPNLQQIA 281 (699)
T ss_pred HHHHHhCccHhhhh
Confidence 33 23344444443
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=3e-05 Score=69.21 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=57.3
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh-hccCcCCEEEccCCCCc-cccch
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREI-EKLPE 171 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~-~~l~~L~~L~L~~~~~~-~~lp~ 171 (492)
.+..++.+++.+|.+..-+. +...+.++|.|++|+++ .|.+..-..+. ..+.+|+.|-|.++.+- +..-+
T Consensus 69 ~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls-------~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLS-------CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HhhhhhhhhcccchhccHHH-HHHHHhcCccceEeecc-------CCcCCCccccCcccccceEEEEEcCCCCChhhhhh
Confidence 57888888888887333333 44556788888888888 66654432333 35678888888887621 13334
Q ss_pred hhhcCCCCCeeecCccc
Q 011151 172 TLCELYNLERLNITSCN 188 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~ 188 (492)
.+..++.++.|.++.|.
T Consensus 141 ~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhcchhhhhhhhccch
Confidence 45667777888777774
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=1.2e-05 Score=63.20 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=46.3
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
.+..+++++|.+..+|..+. .+++.+++|.+.+|. +.. +|..+..++.||.|+++ .|.+...|..+
T Consensus 54 el~~i~ls~N~fk~fp~kft---~kf~t~t~lNl~~ne---isd-vPeE~Aam~aLr~lNl~-------~N~l~~~p~vi 119 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFT---IKFPTATTLNLANNE---ISD-VPEELAAMPALRSLNLR-------FNPLNAEPRVI 119 (177)
T ss_pred eEEEEecccchhhhCCHHHh---hccchhhhhhcchhh---hhh-chHHHhhhHHhhhcccc-------cCccccchHHH
Confidence 45555566666555554443 234455555555555 444 44445555555555555 55555555555
Q ss_pred hccCcCCEEEccCCCCccccch
Q 011151 150 EKLLHLKYLSLCGQREIEKLPE 171 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~ 171 (492)
..+.+|-+|+..++. ..++|.
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcH
Confidence 455555555555555 444443
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.55 E-value=1.8e-05 Score=80.17 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCcceEeecCCCCcccCC-cccC-CCCCCCeEEEeCCCchhhhhhc
Q 011151 429 IMPRLSFLEISGCCKLKALP-DLLL-QKTTLQKLLIGRCPILEERCRK 474 (492)
Q Consensus 429 ~~~~L~~L~l~~c~~l~~l~-~~l~-~l~~L~~L~l~~c~~l~~~~~~ 474 (492)
.+..++.|.++.|...+.-- .... .+..++.+++.+|+.+......
T Consensus 399 ~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 34448999999998777421 1111 1778899999999987766543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=0.00011 Score=70.12 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=16.6
Q ss_pred CCCcEEecCCCcccccccccccccccccccceEE
Q 011151 201 RKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFV 234 (492)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 234 (492)
++|++|++++|... .+|..+. .+|+.|.+..
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 35777777776542 3343333 3556555543
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=1.7e-05 Score=80.44 Aligned_cols=233 Identities=20% Similarity=0.182 Sum_probs=106.1
Q ss_pred CCCCCeeecCccccccc--ccccccCCCCCcEEecCCC-ccccccc----ccccccccccccceEEeecccCCCcCcccc
Q 011151 176 LYNLERLNITSCNHLRE--LPQGIGKLRKLMYLDNDDT-WFLRYLP----VGIGELINLRRVTKFVVGGGYDRARSLGSL 248 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~-~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 248 (492)
++.|+.|.+.++..+.. +-.....++.|+.|+++++ ......+ .....+.+|+.|++..+.... ...+..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is--d~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT--DIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--chhHHHH
Confidence 56666666666543433 2233445666666666652 1111111 122344556666665554222 1222222
Q ss_pred cc-ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecC
Q 011151 249 KK-LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYR 327 (492)
Q Consensus 249 ~~-L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 327 (492)
.. ++.|+.+.+..+..+.+ ..+......+++|++|+++++... ....+......+++|+.|.+....
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~~----------~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHGL----------TDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCccc----------hHHHHHHHHHhCcchhhhhhhhcC
Confidence 21 44555555444443332 233355667777888888766521 122222223335555554433222
Q ss_pred --------------CCc-cccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCC
Q 011151 328 --------------GRR-NVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDT 392 (492)
Q Consensus 328 --------------~~~-~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 392 (492)
... +.+.......+++++.+.+.++. ..+... .+.+.+|+.++ ......
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~--------~~~l~gc~~l~-~~l~~~------ 396 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL--------ELSLRGCPNLT-ESLELR------ 396 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch--------HHHhcCCcccc-hHHHHH------
Confidence 111 00101223355555555555554 222110 22333333221 000000
Q ss_pred CCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCccc
Q 011151 393 DGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA 446 (492)
Q Consensus 393 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 446 (492)
...+..++.|.+..|...+...+... ...+.+++.+++.+|..++.
T Consensus 397 ----~~~~~~l~~L~l~~~~~~t~~~l~~~----~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 397 ----LCRSDSLRVLNLSDCRLVTDKGLRCL----ADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ----hccCCccceEecccCccccccchHHH----hhhhhccccCCccCcccccc
Confidence 00223378888888876665443211 00177888899999888774
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.00086 Score=56.78 Aligned_cols=105 Identities=27% Similarity=0.392 Sum_probs=69.2
Q ss_pred CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCC--CcC
Q 011151 281 NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNC--EHL 358 (492)
Q Consensus 281 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~--~~~ 358 (492)
+...++++.|.+. ....+..++.|..|.+..|.++. +.|..-..+++|..|.+.+|.+. +++
T Consensus 43 ~~d~iDLtdNdl~--------------~l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl 106 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--------------KLDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDL 106 (233)
T ss_pred ccceecccccchh--------------hcccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhc
Confidence 4556777777632 33456677888888888888888 75555557788888888888654 356
Q ss_pred CCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccC
Q 011151 359 PPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD 410 (492)
Q Consensus 359 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (492)
..+..+|+|++|.+-+|+--+.-.-..+ .+-.+|+|+.|++..
T Consensus 107 ~pLa~~p~L~~Ltll~Npv~~k~~YR~y---------vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 107 DPLASCPKLEYLTLLGNPVEHKKNYRLY---------VLYKLPSLRTLDFQK 149 (233)
T ss_pred chhccCCccceeeecCCchhcccCceeE---------EEEecCcceEeehhh
Confidence 6677888888888877762221111111 122677777777765
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.00079 Score=57.01 Aligned_cols=102 Identities=25% Similarity=0.305 Sum_probs=58.1
Q ss_pred CCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhh-ccCcCCEEEccCCCCccccch--h
Q 011151 96 RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIE-KLLHLKYLSLCGQREIEKLPE--T 172 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~lp~--~ 172 (492)
.+...+++..|+ +.. ++. |..++.|..|.+. +|.+..+-..+. .+++|..|.+.+|. +.++.. .
T Consensus 42 d~~d~iDLtdNd---l~~-l~~-lp~l~rL~tLll~-------nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p 108 (233)
T KOG1644|consen 42 DQFDAIDLTDND---LRK-LDN-LPHLPRLHTLLLN-------NNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP 108 (233)
T ss_pred cccceecccccc---hhh-ccc-CCCccccceEEec-------CCcceeeccchhhhccccceEEecCcc-hhhhhhcch
Confidence 344556666665 222 222 5556666777776 666666654433 34567777777766 443321 2
Q ss_pred hhcCCCCCeeecCccccccccc----ccccCCCCCcEEecCCC
Q 011151 173 LCELYNLERLNITSCNHLRELP----QGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~l~~~ 211 (492)
+..+++|++|.+-+|. ....+ -.+..+++|+.||..+-
T Consensus 109 La~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 5556677777776666 32221 12566777777777654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=8e-05 Score=65.91 Aligned_cols=99 Identities=26% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccc--hh
Q 011151 95 LRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLP--ET 172 (492)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp--~~ 172 (492)
+.+.+-|.+.+|. +.++ .....|+.|++|.|+ -|.+..+ ..+..|++|+.|.|+.|. +..+- ..
T Consensus 18 l~~vkKLNcwg~~---L~DI--sic~kMp~lEVLsLS-------vNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG---LDDI--SICEKMPLLEVLSLS-------VNKISSL-APLQRCTRLKELYLRKNC-IESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCC---ccHH--HHHHhcccceeEEee-------ccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 4455566666666 3331 114566777777777 5666665 345667777777777776 55442 23
Q ss_pred hhcCCCCCeeecCcccccccccc-----cccCCCCCcEEe
Q 011151 173 LCELYNLERLNITSCNHLRELPQ-----GIGKLRKLMYLD 207 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~-----~~~~l~~L~~L~ 207 (492)
+.++++|+.|.|..|.....-+. .+..||+|+.||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 55667777777766654333222 134566666664
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.00094 Score=58.96 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=31.5
Q ss_pred ccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcc--cccccccccccCCCCCcEEecCCCcc
Q 011151 151 KLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSC--NHLRELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
.+.+|+.|++.++. ++.+ ..+..+++|+.|.++.| +....++.....+++|++|++++|.+
T Consensus 41 ~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33445555555554 3333 12444566666666666 33334444444556666666666654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.00048 Score=61.17 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=75.5
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC--
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-- 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-- 146 (492)
.++++|..=+++++++... .+++.|++|.++-|. ++..-| |..|++|+.|.|. .|.+.++-
T Consensus 19 ~~vkKLNcwg~~L~DIsic-----~kMp~lEVLsLSvNk---IssL~p--l~rCtrLkElYLR-------kN~I~sldEL 81 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISIC-----EKMPLLEVLSLSVNK---ISSLAP--LQRCTRLKELYLR-------KNCIESLDEL 81 (388)
T ss_pred HHhhhhcccCCCccHHHHH-----HhcccceeEEeeccc---cccchh--HHHHHHHHHHHHH-------hcccccHHHH
Confidence 4788888888888863322 389999999999998 555223 8899999999999 88888775
Q ss_pred chhhccCcCCEEEccCCCCccccchh-----hhcCCCCCeee
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPET-----LCELYNLERLN 183 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~~-----~~~l~~L~~L~ 183 (492)
..+.++++||.|.|..|.-.++-+.. +.-+++|+.||
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 35789999999999998755544332 45678888776
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.12 E-value=0.02 Score=46.19 Aligned_cols=102 Identities=14% Similarity=0.268 Sum_probs=52.2
Q ss_pred ccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccc
Q 011151 92 VKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLP 170 (492)
Q Consensus 92 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp 170 (492)
+.++++|+.+.+.. . +..+-..+|..++.|+.+.+. .+ +..++. .+.++.+|+.+.+.+ . +..++
T Consensus 8 F~~~~~l~~i~~~~-~---~~~I~~~~F~~~~~l~~i~~~-------~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~ 73 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T---IKKIGENAFSNCTSLKSINFP-------NN-LTSIGDNAFSNCKSLESITFPN-N-LKSIG 73 (129)
T ss_dssp TTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEES-------ST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-
T ss_pred HhCCCCCCEEEECC-C---eeEeChhhccccccccccccc-------cc-ccccceeeeecccccccccccc-c-ccccc
Confidence 34777888888764 3 555455667778778888887 53 666654 366777788888865 3 44444
Q ss_pred hh-hhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCC
Q 011151 171 ET-LCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDD 210 (492)
Q Consensus 171 ~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~ 210 (492)
.. +..+.+|+.+.+..+ +..++ ..+.++ +|+.+.+..
T Consensus 74 ~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 33 455788888887653 33332 335555 777777654
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.0005 Score=58.20 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=42.0
Q ss_pred ccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccC-CcccCCCCCCCeEEEeCCCc
Q 011151 399 AFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKAL-PDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 399 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~ 467 (492)
.++.++.|.+.+|..+.+|++...- +..|+|+.|+|++|+.|++- -..+..+++|+.|.+.+-|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 5667777777777777777653320 14577777777777777752 24456677777777776553
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.00062 Score=57.63 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred ccEEEEecccCCCc-CCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcc
Q 011151 344 LRALLLKNCRNCEH-LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTA 422 (492)
Q Consensus 344 L~~L~L~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 422 (492)
++.++-+++.+... +..+..++.++.|.+.+|..+.+.+....+. ..|+|+.|++++|+.+++..+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----------~~~~L~~L~lsgC~rIT~~GL--- 169 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----------LAPSLQDLDLSGCPRITDGGL--- 169 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----------cccchheeeccCCCeechhHH---
Confidence 45555555543322 2235567777777777777666554444332 567888888888888777665
Q ss_pred ccccccCCCCcceEeecCCCCcc
Q 011151 423 IKGEIIIMPRLSFLEISGCCKLK 445 (492)
Q Consensus 423 ~~~~~~~~~~L~~L~l~~c~~l~ 445 (492)
.++..+++|+.|.|.+-+.+.
T Consensus 170 --~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 170 --ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred --HHHHHhhhhHHHHhcCchhhh
Confidence 355677888888887744443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.66 E-value=0.0044 Score=54.86 Aligned_cols=82 Identities=24% Similarity=0.145 Sum_probs=52.7
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCC--cccccccccccccccccccceEEeecccCCCcCcccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDT--WFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
.-.+..|+.|++.++..+. +. .+-.+++|+.|.++.| +....++.-..++++|+++.++.|.+.. ...+..++.
T Consensus 39 ~d~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 3446677777777766322 21 2345889999999999 5555666666677999999999887763 333444444
Q ss_pred ccccCCce
Q 011151 251 LNLLRECS 258 (492)
Q Consensus 251 L~~L~~l~ 258 (492)
+.+|..+.
T Consensus 115 l~nL~~Ld 122 (260)
T KOG2739|consen 115 LENLKSLD 122 (260)
T ss_pred hcchhhhh
Confidence 44443333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.008 Score=31.46 Aligned_cols=17 Identities=35% Similarity=0.864 Sum_probs=7.8
Q ss_pred CCEEEccCCCCccccchh
Q 011151 155 LKYLSLCGQREIEKLPET 172 (492)
Q Consensus 155 L~~L~L~~~~~~~~lp~~ 172 (492)
|++|++++|. ++.+|+.
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 4444444444 3344443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.06 E-value=0.067 Score=25.87 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=5.7
Q ss_pred cCCEEEccCCCCcccc
Q 011151 154 HLKYLSLCGQREIEKL 169 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~l 169 (492)
+|+.|++++|. ++++
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 44555555554 4433
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.96 E-value=0.05 Score=28.40 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=12.4
Q ss_pred eeEEecchhhhhhccccccccCchhhc
Q 011151 125 LRALKLEVRQRWLCKNFIKKIPTNIEK 151 (492)
Q Consensus 125 L~~L~L~~~~~~~~~~~~~~l~~~~~~ 151 (492)
|++|+++ +|.+..+|..+++
T Consensus 2 L~~Ldls-------~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLS-------GNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEET-------SSEESEEGTTTTT
T ss_pred ccEEECC-------CCcCEeCChhhcC
Confidence 6667776 6666666655543
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.75 E-value=0.29 Score=39.23 Aligned_cols=114 Identities=14% Similarity=0.243 Sum_probs=56.6
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-h
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-N 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~ 148 (492)
+++.+.+.. .+..+... ++.+++.|+.+.+.++ +...-..+|..++.++.+.+. + .+..++. .
T Consensus 13 ~l~~i~~~~-~~~~I~~~---~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~-------~-~~~~i~~~~ 76 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGEN---AFSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFP-------N-NLKSIGDNA 76 (129)
T ss_dssp T--EEEETS-T--EE-TT---TTTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEET-------S-TT-EE-TTT
T ss_pred CCCEEEECC-CeeEeChh---hccccccccccccccc----ccccceeeeeccccccccccc-------c-ccccccccc
Confidence 666666653 34433332 3348888999998774 455455668888889999997 5 5555554 4
Q ss_pred hhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCccccccccc-ccccCCCCCc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELP-QGIGKLRKLM 204 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~ 204 (492)
+..+++|+.+.+..+ +..++.. +.++ +|+.+.+..+ ...++ ..+.++++|+
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 667899999999764 4555443 5666 8888888763 33333 3456666653
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.14 E-value=0.0074 Score=52.40 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=41.5
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.+...+.|+++.|. ... +...|..++.|..|+++ .+.+..+|..+.....++.+.+..|. ....|.+.
T Consensus 40 ~~kr~tvld~~s~r---~vn-~~~n~s~~t~~~rl~~s-------knq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR---LVN-LGKNFSILTRLVRLDLS-------KNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred ccceeeeehhhhhH---HHh-hccchHHHHHHHHHhcc-------HhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44455555555554 222 22224444445555555 55555555555555555555555544 45555555
Q ss_pred hcCCCCCeeecCccc
Q 011151 174 CELYNLERLNITSCN 188 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~ 188 (492)
++.+++++++...+.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 555555555555554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.89 E-value=0.011 Score=51.31 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=77.1
Q ss_pred hccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccccc
Q 011151 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIG 198 (492)
Q Consensus 119 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 198 (492)
+..++...+||++ .+.+..+-..++-++.|..|+++.+. +..+|..++....+..++...|. ....|...+
T Consensus 38 i~~~kr~tvld~~-------s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLS-------SNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred hhccceeeeehhh-------hhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 5677889999999 88888888888889999999999999 89999999999999999988887 788899999
Q ss_pred CCCCCcEEecCCCccc
Q 011151 199 KLRKLMYLDNDDTWFL 214 (492)
Q Consensus 199 ~l~~L~~L~l~~~~~~ 214 (492)
..+.+++++..++.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999999988653
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.37 E-value=0.15 Score=27.82 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=13.6
Q ss_pred CCCCCeEEEeCCCchhhhh
Q 011151 454 KTTLQKLLIGRCPILEERC 472 (492)
Q Consensus 454 l~~L~~L~l~~c~~l~~~~ 472 (492)
+++|+.|++++|+++++.-
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4677788888887776653
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.21 E-value=0.47 Score=25.74 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=10.5
Q ss_pred CcCCEEEccCCCCccccchh
Q 011151 153 LHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~~ 172 (492)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455556665555 5555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.21 E-value=0.47 Score=25.74 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=10.5
Q ss_pred CcCCEEEccCCCCccccchh
Q 011151 153 LHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~~ 172 (492)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455556665555 5555543
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.86 E-value=0.32 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=13.6
Q ss_pred CCCcceEeecCCCCccc
Q 011151 430 MPRLSFLEISGCCKLKA 446 (492)
Q Consensus 430 ~~~L~~L~l~~c~~l~~ 446 (492)
+|+|+.|+|++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57888888888888775
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.97 E-value=0.043 Score=54.73 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=26.1
Q ss_pred cccccCCCCcceEeecCCCCcccCC-----cccCCCCCCCeEEEeCCCchh
Q 011151 424 KGEIIIMPRLSFLEISGCCKLKALP-----DLLLQKTTLQKLLIGRCPILE 469 (492)
Q Consensus 424 ~~~~~~~~~L~~L~l~~c~~l~~l~-----~~l~~l~~L~~L~l~~c~~l~ 469 (492)
+......+.+..++++.+.....-+ ..-.+. .+..++++.++.-.
T Consensus 397 ~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~ 446 (478)
T KOG4308|consen 397 AAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITA 446 (478)
T ss_pred hhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhh
Confidence 3445567778888887754443322 112244 77777777777533
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.09 E-value=0.78 Score=24.29 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=5.8
Q ss_pred CCCcEEecCCCcc
Q 011151 201 RKLMYLDNDDTWF 213 (492)
Q Consensus 201 ~~L~~L~l~~~~~ 213 (492)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4555555555544
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=74.18 E-value=0.1 Score=52.12 Aligned_cols=215 Identities=22% Similarity=0.128 Sum_probs=97.0
Q ss_pred ceEEEeccCCcccc-ccccchhhccCCeeeEEecchhhhhhcccccccc-----Cchhhcc-CcCCEEEccCCCCcc---
Q 011151 98 LRSLLVESDDYSWF-SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-----PTNIEKL-LHLKYLSLCGQREIE--- 167 (492)
Q Consensus 98 L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-----~~~~~~l-~~L~~L~L~~~~~~~--- 167 (492)
+..|.+.+|....- ...+-.++...+.|..|+++ .+.++.. -..+... ..|++|.+..|....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~-------~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~ 161 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS-------GNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA 161 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcc-------cCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch
Confidence 55555555542110 01133334556667777777 4444421 1111111 345666666666222
Q ss_pred -ccchhhhcCCCCCeeecCcccccc----ccccccc----CCCCCcEEecCCCccccc----cccccccccc-ccccceE
Q 011151 168 -KLPETLCELYNLERLNITSCNHLR----ELPQGIG----KLRKLMYLDNDDTWFLRY----LPVGIGELIN-LRRVTKF 233 (492)
Q Consensus 168 -~lp~~~~~l~~L~~L~l~~~~~~~----~lp~~~~----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~-L~~L~l~ 233 (492)
.+...+.....+++++++.|.+.. .++..+. ...++++|++++|.+... +...+...+. +..|++.
T Consensus 162 ~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~ 241 (478)
T KOG4308|consen 162 APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLA 241 (478)
T ss_pred HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHH
Confidence 233445556777777777776432 1222222 355677777777754311 1112233333 4445555
Q ss_pred EeecccC-CCcCccccccc-cccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhh
Q 011151 234 VVGGGYD-RARSLGSLKKL-NLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEA 311 (492)
Q Consensus 234 ~~~~~~~-~~~~~~~l~~L-~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~ 311 (492)
.+..... .......+..+ ..++.+....+...+.........+..++.++.+.++.|.+.+. ........
T Consensus 242 ~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~--------~~~~~~~~ 313 (478)
T KOG4308|consen 242 SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY--------GVELLLEA 313 (478)
T ss_pred hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH--------HHHHHHHH
Confidence 5544321 00011112222 22344444333333333334445556666667777766664322 22333444
Q ss_pred cCCCCCccEEEEeecC
Q 011151 312 LGPPPNLKELVIDEYR 327 (492)
Q Consensus 312 l~~~~~L~~L~l~~~~ 327 (492)
+.....+.++.+.++.
T Consensus 314 l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 314 LERKTPLLHLVLGGTG 329 (478)
T ss_pred hhhcccchhhhccccC
Confidence 4444555555555443
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.41 E-value=4.4 Score=22.06 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=9.1
Q ss_pred cCCEEEccCCCCccccch
Q 011151 154 HLKYLSLCGQREIEKLPE 171 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~ 171 (492)
+|++|++++|+ ++.+|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 45555555555 555543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.87 E-value=8.7 Score=20.94 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=5.9
Q ss_pred CcCCEEEccCCC
Q 011151 153 LHLKYLSLCGQR 164 (492)
Q Consensus 153 ~~L~~L~L~~~~ 164 (492)
.+|+.|++++|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 344555555554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.54 E-value=20 Score=19.73 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=7.4
Q ss_pred CcCCEEEccCCC
Q 011151 153 LHLKYLSLCGQR 164 (492)
Q Consensus 153 ~~L~~L~L~~~~ 164 (492)
++|++|+|++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 356666666666
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.30 E-value=22 Score=35.77 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=42.4
Q ss_pred ccCCeeeEEecchhhhhhccccccccC---chhhccCcCCEEEccCCCC-ccccchhhh--cCCCCCeeecCcccccccc
Q 011151 120 DKLTCLRALKLEVRQRWLCKNFIKKIP---TNIEKLLHLKYLSLCGQRE-IEKLPETLC--ELYNLERLNITSCNHLREL 193 (492)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~l~~L~~L~L~~~~~-~~~lp~~~~--~l~~L~~L~l~~~~~~~~l 193 (492)
.+.+.+..++|+ +|.+..+- .-....++|..|+|++|.. +... .++. +...|++|.+.+|+..+.+
T Consensus 215 ~n~p~i~sl~ls-------nNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLS-------NNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecc-------cchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccch
Confidence 345666667776 66655432 2234556777777777721 2221 1222 2345777777777754433
Q ss_pred cc---cc----cCCCCCcEEe
Q 011151 194 PQ---GI----GKLRKLMYLD 207 (492)
Q Consensus 194 p~---~~----~~l~~L~~L~ 207 (492)
.. .+ ..+|+|..||
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 21 11 2466776664
No 89
>PF14162 YozD: YozD-like protein
Probab=32.92 E-value=47 Score=21.32 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHhCCCCcccc
Q 011151 2 EDIGEEYFNILASRSFFQDFD 22 (492)
Q Consensus 2 ~~~~~~~~~~L~~~~ll~~~~ 22 (492)
|+.|+=++++|+.||++-.-.
T Consensus 11 EEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHHHccCCCcHH
Confidence 788999999999999986644
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.71 E-value=25 Score=35.38 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=35.3
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh--ccccccEEEEecccC
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM--SLTNLRALLLKNCRN 354 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~--~l~~L~~L~L~~~~~ 354 (492)
.+.+.+..+.++.|++...+ .+-......|+|+.|+|++|...... ..++. ....|+.|-+.+|..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld----------~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLD----------ALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchh----------hhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcc
Confidence 45566667777777654332 12222334566777777776222210 12222 334466677777665
Q ss_pred CCc
Q 011151 355 CEH 357 (492)
Q Consensus 355 ~~~ 357 (492)
.+.
T Consensus 283 c~t 285 (585)
T KOG3763|consen 283 CTT 285 (585)
T ss_pred ccc
Confidence 554
No 91
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=26.44 E-value=93 Score=21.11 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCeeeEEe
Q 011151 4 IGEEYFNILASRSFFQDFDKDDDGEISTCKM 34 (492)
Q Consensus 4 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~ 34 (492)
.....+++|+++++++......+++...+..
T Consensus 34 ~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 34 TVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 4567899999999999888877888776654
No 92
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=21.51 E-value=88 Score=23.48 Aligned_cols=39 Identities=10% Similarity=0.247 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHH
Q 011151 2 EDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQ 43 (492)
Q Consensus 2 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~ 43 (492)
.+.|.+|++.|++++++...+++. -+.+.+-+--.++..
T Consensus 45 y~~~~~yi~~L~~~Gli~~~~~~~---~~~y~lT~KG~~fle 83 (95)
T COG3432 45 YKRAQKYIEMLVEKGLIIKQDNGR---RKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHHHHHHhCCCEEeccCCc---cceEEEChhHHHHHH
Confidence 468999999999999777766542 124666665555533
Done!