Query 011151
Match_columns 492
No_of_seqs 235 out of 3482
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:51:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.9E-33 1.7E-37 295.1 18.0 389 69-491 269-767 (768)
2 4eco_A Uncharacterized protein 100.0 2.5E-31 8.5E-36 275.8 19.0 370 68-491 205-634 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2E-30 6.8E-35 273.7 21.8 349 68-467 447-839 (876)
4 3rgz_A Protein brassinosteroid 100.0 1.4E-30 4.9E-35 276.2 18.1 299 68-412 222-549 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-30 1.7E-34 265.9 18.7 139 69-222 32-174 (606)
6 3v47_A TOLL-like receptor 5B a 100.0 4.5E-29 1.5E-33 249.5 20.9 363 69-467 30-407 (455)
7 4eco_A Uncharacterized protein 100.0 1.7E-29 5.8E-34 262.0 18.3 328 80-467 194-578 (636)
8 3t6q_A CD180 antigen; protein- 100.0 7.2E-29 2.5E-33 257.1 22.5 274 69-376 33-361 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 2.1E-29 7.3E-34 265.9 17.9 314 115-467 440-818 (876)
10 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-28 5.9E-33 249.5 23.0 342 69-467 21-480 (520)
11 2z63_A TOLL-like receptor 4, v 100.0 7.2E-29 2.4E-33 255.3 19.6 144 69-227 28-175 (570)
12 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-28 6E-33 257.6 22.5 353 69-466 25-441 (680)
13 3t6q_A CD180 antigen; protein- 100.0 2.2E-28 7.6E-33 253.4 22.2 276 73-382 16-342 (606)
14 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-27 4.5E-32 245.1 25.4 340 69-467 52-509 (562)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-28 1.8E-32 247.6 21.3 360 69-467 26-509 (549)
16 4fmz_A Internalin; leucine ric 100.0 1E-27 3.5E-32 230.8 21.1 302 69-467 44-345 (347)
17 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-27 5E-32 247.3 23.6 151 72-239 14-167 (606)
18 2z7x_B TOLL-like receptor 1, v 100.0 3.3E-28 1.1E-32 247.4 18.4 144 72-237 3-150 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-27 1.1E-31 253.0 26.9 349 68-467 23-438 (844)
20 2id5_A Lingo-1, leucine rich r 100.0 1E-27 3.5E-32 241.0 20.7 149 73-238 15-165 (477)
21 3o6n_A APL1; leucine-rich repe 100.0 1.7E-27 5.8E-32 233.0 20.7 305 94-467 43-351 (390)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-27 7.8E-32 243.3 20.8 353 70-467 32-485 (562)
23 1o6v_A Internalin A; bacterial 100.0 9.8E-27 3.3E-31 232.9 24.0 322 69-467 46-387 (466)
24 2z63_A TOLL-like receptor 4, v 100.0 1.3E-27 4.6E-32 245.8 18.1 133 69-215 52-191 (570)
25 3v47_A TOLL-like receptor 5B a 99.9 2.3E-27 7.8E-32 237.1 18.3 334 68-448 53-412 (455)
26 4fmz_A Internalin; leucine ric 99.9 1.7E-26 5.9E-31 222.2 21.3 280 68-442 65-344 (347)
27 3oja_B Anopheles plasmodium-re 99.9 8.3E-27 2.9E-31 240.4 20.2 306 94-468 49-358 (597)
28 3o6n_A APL1; leucine-rich repe 99.9 1.7E-26 5.8E-31 225.8 18.4 306 69-444 45-352 (390)
29 3j0a_A TOLL-like receptor 5; m 99.9 4.6E-26 1.6E-30 244.1 23.4 349 72-467 7-393 (844)
30 2id5_A Lingo-1, leucine rich r 99.9 3.5E-26 1.2E-30 229.8 20.0 297 69-412 32-331 (477)
31 1ziw_A TOLL-like receptor 3; i 99.9 7.1E-26 2.4E-30 237.8 23.1 105 69-188 73-182 (680)
32 1o6v_A Internalin A; bacterial 99.9 1.9E-25 6.4E-30 223.6 25.0 312 94-467 44-365 (466)
33 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-25 6.3E-30 222.0 23.1 206 69-330 42-247 (457)
34 2z81_A CD282 antigen, TOLL-lik 99.9 9.7E-27 3.3E-31 238.3 14.1 344 74-466 10-442 (549)
35 3oja_B Anopheles plasmodium-re 99.9 1E-25 3.5E-30 232.3 17.7 306 69-444 51-358 (597)
36 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-25 4.4E-30 234.0 18.5 362 69-467 52-579 (635)
37 3bz5_A Internalin-J, INLJ; leu 99.9 3E-25 1E-29 220.5 19.3 300 94-467 40-351 (457)
38 1xku_A Decorin; proteoglycan, 99.9 9.8E-25 3.3E-29 208.3 18.6 245 70-382 32-279 (330)
39 2ft3_A Biglycan; proteoglycan, 99.9 5.9E-25 2E-29 210.0 16.3 238 70-376 34-275 (332)
40 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4E-29 205.8 15.4 248 69-377 50-303 (313)
41 4fcg_A Uncharacterized protein 99.9 3.9E-24 1.3E-28 203.4 16.4 231 122-465 80-311 (328)
42 4g8a_A TOLL-like receptor 4; l 99.9 5.4E-24 1.8E-28 221.8 18.7 147 74-238 36-186 (635)
43 1xku_A Decorin; proteoglycan, 99.9 3.5E-23 1.2E-27 197.5 21.3 293 97-466 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-23 6.1E-28 199.7 18.9 292 97-466 34-331 (332)
45 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-24 1.2E-28 202.4 13.4 250 96-415 50-305 (313)
46 1jl5_A Outer protein YOPM; leu 99.9 3.2E-23 1.1E-27 205.7 16.7 334 69-467 11-369 (454)
47 1z7x_W Ribonuclease inhibitor; 99.9 8.5E-26 2.9E-30 226.1 -2.7 367 69-467 3-410 (461)
48 1jl5_A Outer protein YOPM; leu 99.9 1.2E-22 4.2E-27 201.5 19.1 303 69-467 91-408 (454)
49 4fcg_A Uncharacterized protein 99.9 4.9E-23 1.7E-27 195.8 13.2 223 94-375 79-311 (328)
50 2z66_A Variable lymphocyte rec 99.9 4.3E-22 1.5E-26 187.9 13.5 242 73-376 11-259 (306)
51 3ogk_B Coronatine-insensitive 99.9 5.2E-23 1.8E-27 212.6 6.0 350 69-466 112-524 (592)
52 2z80_A TOLL-like receptor 2, v 99.9 2.7E-21 9.1E-26 186.3 17.2 268 74-376 36-312 (353)
53 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-22 1.4E-26 185.9 11.1 225 72-357 14-240 (285)
54 1z7x_W Ribonuclease inhibitor; 99.9 2.9E-24 1E-28 214.9 -5.7 368 69-467 28-439 (461)
55 3ogk_B Coronatine-insensitive 99.9 1.6E-22 5.4E-27 208.9 6.4 369 69-466 73-499 (592)
56 2z80_A TOLL-like receptor 2, v 99.9 9.6E-22 3.3E-26 189.4 9.5 261 69-358 52-317 (353)
57 3zyi_A Leucine-rich repeat-con 99.8 6.4E-21 2.2E-25 189.9 15.3 241 71-376 56-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 6.5E-21 2.2E-25 189.2 14.9 241 71-376 45-290 (440)
59 3o53_A Protein LRIM1, AGAP0063 99.8 9.6E-22 3.3E-26 186.2 8.3 245 94-416 32-277 (317)
60 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-20 1.5E-24 188.8 20.5 258 69-444 40-297 (622)
61 2z66_A Variable lymphocyte rec 99.8 7.6E-21 2.6E-25 179.3 13.1 243 99-412 10-259 (306)
62 3zyi_A Leucine-rich repeat-con 99.8 3.1E-20 1.1E-24 185.0 16.5 242 98-412 56-301 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 4.7E-20 1.6E-24 182.9 16.3 242 98-412 45-290 (440)
64 3g06_A SSPH2 (leucine-rich rep 99.8 9E-20 3.1E-24 186.5 18.4 258 96-468 40-297 (622)
65 2p1m_B Transport inhibitor res 99.8 1.5E-21 5.3E-26 201.6 4.4 136 315-468 371-519 (594)
66 3o53_A Protein LRIM1, AGAP0063 99.8 7.5E-22 2.6E-26 187.0 1.4 264 98-446 12-277 (317)
67 3oja_A Leucine-rich immune mol 99.8 3.6E-20 1.2E-24 185.6 11.3 254 80-411 18-272 (487)
68 1wwl_A Monocyte differentiatio 99.8 1E-20 3.4E-25 178.8 6.7 205 119-376 39-264 (312)
69 1wwl_A Monocyte differentiatio 99.8 9E-21 3.1E-25 179.1 4.3 84 121-212 93-184 (312)
70 3oja_A Leucine-rich immune mol 99.8 4.7E-20 1.6E-24 184.7 6.1 76 124-213 35-111 (487)
71 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-19 7.7E-24 167.3 10.3 204 69-330 32-239 (285)
72 2p1m_B Transport inhibitor res 99.8 1E-20 3.4E-25 195.5 -1.4 332 94-467 103-493 (594)
73 2z62_A TOLL-like receptor 4, v 99.8 1.6E-18 5.5E-23 160.7 13.6 220 78-357 16-239 (276)
74 2ast_B S-phase kinase-associat 99.8 4.3E-19 1.5E-23 169.6 7.6 101 98-211 49-152 (336)
75 2z62_A TOLL-like receptor 4, v 99.7 7.4E-18 2.5E-22 156.2 12.0 204 123-376 28-235 (276)
76 1h6u_A Internalin H; cell adhe 99.7 4.9E-17 1.7E-21 153.0 15.2 190 94-376 39-228 (308)
77 2o6q_A Variable lymphocyte rec 99.7 6.8E-17 2.3E-21 149.1 15.9 86 277-376 130-216 (270)
78 2ca6_A RAN GTPase-activating p 99.7 5.7E-19 1.9E-23 172.1 1.3 236 94-376 30-314 (386)
79 1p9a_G Platelet glycoprotein I 99.7 5.8E-17 2E-21 151.0 13.8 198 94-376 8-206 (290)
80 2ca6_A RAN GTPase-activating p 99.7 6.8E-19 2.3E-23 171.6 0.5 267 115-440 24-339 (386)
81 2xwt_C Thyrotropin receptor; s 99.7 4.6E-17 1.6E-21 147.4 12.0 116 76-211 18-140 (239)
82 2ast_B S-phase kinase-associat 99.7 2.8E-18 9.4E-23 164.0 3.9 225 70-352 48-282 (336)
83 3rfs_A Internalin B, repeat mo 99.7 4.6E-17 1.6E-21 150.4 11.1 85 278-382 155-239 (272)
84 1h6u_A Internalin H; cell adhe 99.7 2.6E-16 9.1E-21 148.0 15.4 143 69-235 41-183 (308)
85 3rfs_A Internalin B, repeat mo 99.7 2.7E-17 9.3E-22 152.0 8.4 207 94-366 39-247 (272)
86 1p9a_G Platelet glycoprotein I 99.7 1.3E-16 4.4E-21 148.6 12.4 199 69-330 10-209 (290)
87 2xwt_C Thyrotropin receptor; s 99.7 9.1E-17 3.1E-21 145.5 11.0 92 142-237 23-117 (239)
88 3goz_A Leucine-rich repeat-con 99.7 7.3E-18 2.5E-22 162.6 3.9 233 96-376 22-295 (362)
89 2o6q_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 146.0 12.9 201 70-330 17-219 (270)
90 4glp_A Monocyte differentiatio 99.7 1.3E-16 4.4E-21 150.4 11.2 228 94-376 62-305 (310)
91 4ay9_X Follicle-stimulating ho 99.7 4.7E-16 1.6E-20 149.2 13.1 99 317-440 155-255 (350)
92 3goz_A Leucine-rich repeat-con 99.7 5.6E-17 1.9E-21 156.4 6.0 241 69-357 22-299 (362)
93 4ay9_X Follicle-stimulating ho 99.7 1.5E-15 5E-20 145.7 15.8 238 99-410 12-255 (350)
94 4glp_A Monocyte differentiatio 99.6 1.2E-16 4.1E-21 150.7 4.6 228 69-356 64-308 (310)
95 3m19_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 133.6 12.9 154 69-237 35-191 (251)
96 4ezg_A Putative uncharacterize 99.6 8.9E-15 3E-19 128.0 12.1 150 69-238 44-194 (197)
97 3m19_A Variable lymphocyte rec 99.6 6E-15 2E-19 134.5 11.4 175 70-293 15-192 (251)
98 2v9t_B SLIT homolog 2 protein 99.6 9.8E-15 3.4E-19 130.0 10.6 148 73-237 15-164 (220)
99 3e6j_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 130.1 10.5 149 72-238 22-172 (229)
100 2v70_A SLIT-2, SLIT homolog 2 99.5 2.3E-14 7.8E-19 127.6 11.4 150 72-238 14-166 (220)
101 1h6t_A Internalin B; cell adhe 99.5 2.2E-14 7.4E-19 133.6 11.3 171 94-330 44-214 (291)
102 1h6t_A Internalin B; cell adhe 99.5 3.6E-14 1.2E-18 132.2 12.0 145 69-237 46-190 (291)
103 4ezg_A Putative uncharacterize 99.5 2.3E-14 7.8E-19 125.4 9.2 128 94-235 42-169 (197)
104 1m9s_A Internalin B; cell inva 99.5 6E-14 2E-18 143.3 13.5 172 120-356 40-211 (605)
105 2o6s_A Variable lymphocyte rec 99.5 7.8E-14 2.7E-18 123.2 11.5 148 69-238 28-178 (208)
106 1xeu_A Internalin C; cellular 99.5 1.5E-13 5.1E-18 125.9 12.2 146 69-239 41-186 (263)
107 2o6s_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 121.6 11.5 146 73-236 11-159 (208)
108 1xeu_A Internalin C; cellular 99.5 4E-14 1.4E-18 129.7 8.1 167 121-376 17-183 (263)
109 2ell_A Acidic leucine-rich nuc 99.5 9.7E-14 3.3E-18 118.1 9.8 128 96-236 24-158 (168)
110 2je0_A Acidic leucine-rich nuc 99.5 6.3E-14 2.2E-18 116.6 7.8 127 94-233 15-148 (149)
111 3cvr_A Invasion plasmid antige 99.5 9.4E-14 3.2E-18 140.3 10.3 131 70-235 60-190 (571)
112 3cvr_A Invasion plasmid antige 99.5 7.4E-14 2.5E-18 141.1 9.0 65 139-213 68-132 (571)
113 1m9s_A Internalin B; cell inva 99.5 1.4E-13 4.6E-18 140.7 10.7 144 70-237 44-187 (605)
114 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.5E-18 117.2 8.9 131 69-218 24-163 (168)
115 3e6j_A Variable lymphocyte rec 99.5 5.6E-13 1.9E-17 119.4 12.8 131 69-215 40-173 (229)
116 2v9t_B SLIT homolog 2 protein 99.5 4.8E-13 1.6E-17 119.0 12.2 132 69-214 32-165 (220)
117 2xot_A Amphoterin-induced prot 99.4 3.5E-13 1.2E-17 129.6 9.9 129 97-237 40-175 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 9.7E-13 3.3E-17 117.1 12.0 134 69-215 32-167 (220)
119 1a9n_A U2A', U2A'; complex (nu 99.4 5.1E-13 1.7E-17 114.5 9.3 129 94-237 17-152 (176)
120 2je0_A Acidic leucine-rich nuc 99.4 3E-13 1E-17 112.5 6.8 124 69-210 17-149 (149)
121 2xot_A Amphoterin-induced prot 99.4 8.3E-13 2.8E-17 127.0 10.2 154 69-237 39-201 (361)
122 3sb4_A Hypothetical leucine ri 99.4 4.7E-12 1.6E-16 120.2 14.4 126 314-462 200-328 (329)
123 4b8c_D Glucose-repressible alc 99.4 3.6E-13 1.2E-17 141.1 5.5 115 94-221 222-336 (727)
124 1w8a_A SLIT protein; signaling 99.3 2.3E-12 7.7E-17 112.1 9.3 127 72-215 11-140 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.6E-17 111.3 8.0 127 69-214 19-153 (176)
126 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.7E-17 137.4 7.7 156 69-239 173-330 (727)
127 1w8a_A SLIT protein; signaling 99.3 3E-12 1E-16 111.2 8.8 126 99-238 11-139 (192)
128 2wfh_A SLIT homolog 2 protein 99.3 1.3E-11 4.4E-16 107.2 10.9 122 73-213 14-138 (193)
129 1ds9_A Outer arm dynein; leuci 99.3 1.3E-13 4.5E-18 120.7 -2.0 142 71-231 25-180 (198)
130 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.9E-16 107.6 9.7 126 99-238 13-139 (193)
131 2o6r_A Variable lymphocyte rec 99.3 1.7E-11 5.9E-16 105.0 10.2 127 72-216 10-139 (177)
132 1dce_A Protein (RAB geranylger 99.3 1.2E-11 4.2E-16 125.5 10.2 154 93-257 406-565 (567)
133 3sb4_A Hypothetical leucine ri 99.2 4.8E-11 1.7E-15 113.1 11.9 98 315-437 225-327 (329)
134 1dce_A Protein (RAB geranylger 99.2 2.9E-11 1E-15 122.7 9.2 197 70-287 350-567 (567)
135 1ds9_A Outer arm dynein; leuci 99.2 1.3E-13 4.3E-18 120.7 -7.3 113 115-238 40-153 (198)
136 2o6r_A Variable lymphocyte rec 99.1 1.8E-10 6.2E-15 98.6 9.7 126 98-238 9-137 (177)
137 4fs7_A Uncharacterized protein 99.1 5E-09 1.7E-13 101.8 18.7 308 91-465 66-376 (394)
138 2r9u_A Variable lymphocyte rec 99.0 4.6E-10 1.6E-14 95.5 8.6 100 99-213 15-117 (174)
139 2r9u_A Variable lymphocyte rec 99.0 7.3E-10 2.5E-14 94.3 9.1 100 72-188 15-116 (174)
140 4fdw_A Leucine rich hypothetic 99.0 5.3E-09 1.8E-13 101.4 16.0 240 95-376 112-356 (401)
141 3g39_A Variable lymphocyte rec 99.0 9.1E-10 3.1E-14 93.4 8.1 102 98-214 11-115 (170)
142 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 92.6 8.7 102 71-189 11-114 (170)
143 4fdw_A Leucine rich hypothetic 99.0 8.9E-09 3E-13 99.8 15.0 236 121-411 111-355 (401)
144 4fs7_A Uncharacterized protein 98.9 9.7E-09 3.3E-13 99.8 14.3 318 69-460 71-393 (394)
145 3un9_A NLR family member X1; l 98.7 6.6E-09 2.3E-13 99.7 4.1 107 96-213 72-195 (372)
146 2ifg_A High affinity nerve gro 98.7 4.2E-08 1.4E-12 93.5 9.0 85 119-212 27-114 (347)
147 4gt6_A Cell surface protein; l 98.7 4.9E-07 1.7E-11 87.7 16.3 105 93-211 60-170 (394)
148 4gt6_A Cell surface protein; l 98.7 1.8E-06 6.1E-11 83.7 20.2 107 92-210 83-191 (394)
149 2ifg_A High affinity nerve gro 98.6 6.7E-08 2.3E-12 92.1 8.6 101 73-189 12-115 (347)
150 3e4g_A ATP synthase subunit S, 98.6 1.4E-08 4.9E-13 84.8 1.6 66 399-470 83-154 (176)
151 3un9_A NLR family member X1; l 98.5 1.6E-08 5.4E-13 97.1 1.7 160 69-239 72-253 (372)
152 3e4g_A ATP synthase subunit S, 98.5 2.5E-08 8.5E-13 83.4 1.9 93 342-446 61-154 (176)
153 2ra8_A Uncharacterized protein 98.4 2.3E-07 7.8E-12 88.3 6.5 152 169-355 164-320 (362)
154 4h09_A Hypothetical leucine ri 98.3 1.7E-05 5.8E-10 76.3 17.7 105 312-440 236-342 (379)
155 2ra8_A Uncharacterized protein 98.3 1.1E-07 3.8E-12 90.4 2.1 64 278-353 277-341 (362)
156 1io0_A Tropomodulin; LRR prote 98.2 1.6E-06 5.5E-11 74.2 5.0 118 88-213 28-163 (185)
157 3rw6_A Nuclear RNA export fact 98.1 7.6E-07 2.6E-11 80.3 2.2 80 150-232 167-258 (267)
158 1io0_A Tropomodulin; LRR prote 98.0 1.8E-06 6.1E-11 74.0 3.0 120 111-238 24-164 (185)
159 4h09_A Hypothetical leucine ri 98.0 0.00035 1.2E-08 67.0 18.1 106 275-409 235-341 (379)
160 3rw6_A Nuclear RNA export fact 97.8 2.1E-05 7.2E-10 70.9 6.1 106 94-208 139-258 (267)
161 2a5y_B CED-4; apoptosis; HET: 96.7 0.00074 2.5E-08 68.2 3.1 47 1-51 427-473 (549)
162 1pgv_A TMD-1, tropomodulin TMD 95.3 0.018 6.3E-07 48.8 4.7 109 94-211 39-167 (197)
163 1pgv_A TMD-1, tropomodulin TMD 94.7 0.033 1.1E-06 47.2 4.7 89 115-211 33-136 (197)
164 3rfe_A Platelet glycoprotein I 94.6 0.048 1.6E-06 42.9 5.4 34 154-188 32-66 (130)
165 3rfe_A Platelet glycoprotein I 92.1 0.14 4.6E-06 40.3 4.1 34 124-164 32-66 (130)
166 3sfz_A APAF-1, apoptotic pepti 90.9 0.19 6.4E-06 56.0 5.2 45 2-49 408-452 (1249)
167 1z6t_A APAF-1, apoptotic prote 79.0 1.4 4.8E-05 44.5 4.1 42 3-47 409-450 (591)
168 1vt4_I APAF-1 related killer D 75.8 1.9 6.4E-05 46.3 3.9 35 3-42 402-436 (1221)
169 2lz0_A Uncharacterized protein 34.6 20 0.0007 26.1 2.2 34 94-131 18-51 (100)
170 2lz0_A Uncharacterized protein 28.8 73 0.0025 23.0 4.4 15 426-440 38-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-33 Score=295.11 Aligned_cols=389 Identities=20% Similarity=0.192 Sum_probs=265.2
Q ss_pred cceEEEEEEeecCC-CcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccc-ccC
Q 011151 69 KKILHLLLTLHRGA-SVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK-KIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~l~ 146 (492)
++++.+++.+|.+. .+|..+. ..+++|+.|++++|. +.+..|..|+.+++|++|+++ ++.+. .+|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~---~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~-------~n~l~~~ip 335 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLS---GACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALS-------SNNFSGELP 335 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSC---TTCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECC-------SSEEEEECC
T ss_pred CCCCEEECcCCccCCccCHHHH---hhcCcCCEEECcCCc---CCCccchHHhcCCCccEEECC-------CCcccCcCC
Confidence 46667777666655 3454443 124888888888887 776678878888888888888 77765 677
Q ss_pred ch-hhccCcCCEEEccCCCCccccchhhhcCC-CCCeeecCcccccccccccccC--CCCCcEEecCCCccccccccccc
Q 011151 147 TN-IEKLLHLKYLSLCGQREIEKLPETLCELY-NLERLNITSCNHLRELPQGIGK--LRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 147 ~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~--l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
.. +.++++|++|++++|.+.+.+|..+.++. +|++|++++|.+...+|..+.. +++|++|++++|.+.+.+|..+.
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 65 78888888888888884457888888877 8888888888866667766665 77889999998888778888888
Q ss_pred ccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhh
Q 011151 223 ELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR 302 (492)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 302 (492)
.+++|+.|++..+..... ....+..++.|+.+.+....-.. .....+..+++|+.|++++|.+++
T Consensus 416 ~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~-------- 480 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGT---IPSSLGSLSKLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTG-------- 480 (768)
T ss_dssp GCTTCCEEECCSSEEESC---CCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCS--------
T ss_pred cCCCCCEEECcCCcccCc---ccHHHhcCCCCCEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccC--------
Confidence 899999998888876632 33445556666666665543221 111456788899999999888642
Q ss_pred hhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceee
Q 011151 303 RESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRV 381 (492)
Q Consensus 303 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~ 381 (492)
..+..+..+++|++|++++|.+... + |.++..+++|++|++++|.+.+.+|. ++.+++|+.|++++|.....+
T Consensus 481 ----~~p~~l~~l~~L~~L~L~~N~l~~~-~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 481 ----EIPSGLSNCTNLNWISLSNNRLTGE-I-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp ----CCCGGGGGCTTCCEEECCSSCCCSC-C-CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred ----cCCHHHhcCCCCCEEEccCCccCCc-C-ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 3455677788999999999988752 4 88888899999999999988877776 788889999999888754444
Q ss_pred cccccCCcCC----------------------------------------------------------CCCCcccccccc
Q 011151 382 GNEFLGVESD----------------------------------------------------------TDGSSIIAFPKL 403 (492)
Q Consensus 382 ~~~~~~~~~~----------------------------------------------------------~~~~~~~~l~~L 403 (492)
+..+...... ........+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 4333211000 001112234455
Q ss_pred cceeccCcc------------------cccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCC
Q 011151 404 KHLKFYDME------------------ELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 404 ~~L~l~~~~------------------~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 465 (492)
+.|+++++. ++..+.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|++|++++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 555554432 11123355678888889999999999997766688988999999999999987
Q ss_pred Cchh---------------------------hhhhcCCCCCCccCCCCCcccc
Q 011151 466 PILE---------------------------ERCRKETGEDWPNIRHIPELYI 491 (492)
Q Consensus 466 ~~l~---------------------------~~~~~~~~~~~~~i~~~~~~~~ 491 (492)
+.-. ..|....+++|++|+|+|+++-
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------------
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 5210 1467788999999999998764
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.5e-31 Score=275.79 Aligned_cols=370 Identities=14% Similarity=0.140 Sum_probs=274.5
Q ss_pred ccceEEEEEEeecCCC------------------cccccccCcc--CCCCceEEEeccCCccccccccchhhccCCeeeE
Q 011151 68 EKKILHLLLTLHRGAS------------------VPISIWGNVK--GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRA 127 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~------------------~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 127 (492)
.++++.+++++|.+.. +|. .+. ++++|+.|++++|. +.+.+|..++.+++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQL 277 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCE
Confidence 3688999999998876 443 334 78999999999988 77778888999999999
Q ss_pred Eecchhhhhhcccc-cc--ccCchhhcc------CcCCEEEccCCCCccccch--hhhcCCCCCeeecCccccccccccc
Q 011151 128 LKLEVRQRWLCKNF-IK--KIPTNIEKL------LHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQG 196 (492)
Q Consensus 128 L~L~~~~~~~~~~~-~~--~l~~~~~~l------~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~ 196 (492)
|+++ ++. +. .+|..+.++ ++|++|++++|. +..+|. .++++++|++|++++|.+...+| .
T Consensus 278 L~Ls-------~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 278 INVA-------CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp EECT-------TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred EECc-------CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 9999 776 65 488877776 899999999999 668988 89999999999999998555888 7
Q ss_pred ccCCCCCcEEecCCCccccccccccccccc-ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhh
Q 011151 197 IGKLRKLMYLDNDDTWFLRYLPVGIGELIN-LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAE 275 (492)
Q Consensus 197 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 275 (492)
++.+++|++|++++|.+. .+|..+..+++ |+.|+++.+.... ++..+.. ..+..|+.+.+....-.... ...
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~-~~l~~L~~L~Ls~N~l~~~~----p~~ 421 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA-KSVSVMSAIDFSYNEIGSVD----GKN 421 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCT-TCSSCEEEEECCSSCTTTTT----TCS
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhh-cccCccCEEECcCCcCCCcc----hhh
Confidence 888999999999999775 78888888988 9999998887653 2322221 11225555555543221110 012
Q ss_pred hc-------ccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhcc-------
Q 011151 276 LE-------KKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSL------- 341 (492)
Q Consensus 276 l~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l------- 341 (492)
+. .+++|+.|++++|.++..+. ..+..+++|++|++++|.+.. +|+..+...
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------------~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPK------------ELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNT 487 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCT------------HHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTG
T ss_pred hcccccccccCCCCCEEECcCCccCcCCH------------HHHccCCCCCEEECCCCCCCC--cCHHHhcccccccccc
Confidence 33 56789999999998753321 123357899999999999886 744444333
Q ss_pred ccccEEEEecccCCCcCCC-CC--CCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccc
Q 011151 342 TNLRALLLKNCRNCEHLPP-LG--KLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWD 418 (492)
Q Consensus 342 ~~L~~L~L~~~~~~~~~~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 418 (492)
++|+.|++++|.+. .+|. +. .+++|++|++++|. ++.++.. +..+++|+.|+++++..+....
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~------------~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ------------PLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCSSCCEEECCSCBCTTCCB
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChh------------hhcCCCCCEEECCCCcccccCc
Confidence 38999999999877 4554 55 89999999999987 4334433 2378999999999887777777
Q ss_pred cCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCchh----hhhhc-------CCCCCCccCCCCC
Q 011151 419 FGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILE----ERCRK-------ETGEDWPNIRHIP 487 (492)
Q Consensus 419 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~----~~~~~-------~~~~~~~~i~~~~ 487 (492)
+.+.+|..+..+++|+.|++++|. ++.+|..+. ++|+.|++++|+... ..+.. -....+..|..+|
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred ccccChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 788889999999999999999965 488998765 899999999997422 22211 1223445666777
Q ss_pred cccc
Q 011151 488 ELYI 491 (492)
Q Consensus 488 ~~~~ 491 (492)
.+++
T Consensus 631 ~L~~ 634 (636)
T 4eco_A 631 ALDI 634 (636)
T ss_dssp GGCC
T ss_pred cccc
Confidence 7765
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2e-30 Score=273.75 Aligned_cols=349 Identities=15% Similarity=0.138 Sum_probs=265.3
Q ss_pred ccceEEEEEEeecCCC------------------cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEe
Q 011151 68 EKKILHLLLTLHRGAS------------------VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALK 129 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 129 (492)
.++++.|++++|.+.. +|..+. +.++++|+.|++++|. +.+.+|..|..+++|+.|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhh--hccCCCCCEEECcCCC---CCccChHHHhCCCCCCEEE
Confidence 3689999999999886 444321 1278999999999998 7777888899999999999
Q ss_pred cchhhhhhcccc-cc--ccCchhhccC-------cCCEEEccCCCCccccch--hhhcCCCCCeeecCcccccccccccc
Q 011151 130 LEVRQRWLCKNF-IK--KIPTNIEKLL-------HLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQGI 197 (492)
Q Consensus 130 L~~~~~~~~~~~-~~--~l~~~~~~l~-------~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~ 197 (492)
++ ++. +. .+|..+.++. +|++|++++|. +..+|. .++++++|+.|++++|. +..+| .+
T Consensus 522 Ls-------~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~ 591 (876)
T 4ecn_A 522 IA-------CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AF 591 (876)
T ss_dssp CT-------TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CC
T ss_pred Cc-------CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hh
Confidence 99 776 65 4787777666 99999999999 669998 89999999999999999 45888 78
Q ss_pred cCCCCCcEEecCCCccccccccccccccc-ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhh
Q 011151 198 GKLRKLMYLDNDDTWFLRYLPVGIGELIN-LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAEL 276 (492)
Q Consensus 198 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l 276 (492)
+.+++|++|++++|.+. .+|..+..+++ |+.|+++.+.... ++..+... ....|+.+.+....-.... ..+...+
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~-~~~~L~~L~Ls~N~l~g~i-p~l~~~l 667 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK-SVYVMGSVDFSYNKIGSEG-RNISCSM 667 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTT-CSSCEEEEECCSSCTTTTS-SSCSSCT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cchhhhcc-ccCCCCEEECcCCcCCCcc-ccchhhh
Confidence 99999999999999886 88888999998 9999999887653 23222221 1122555555443221100 0000111
Q ss_pred c--ccCCcceEecccccCCCCchhhHhhhhHHHHhhhc-CCCCCccEEEEeecCCCccccCchhhh-------ccccccE
Q 011151 277 E--KKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL-GPPPNLKELVIDEYRGRRNVVPRNWVM-------SLTNLRA 346 (492)
Q Consensus 277 ~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~l~~~~~~-------~l~~L~~ 346 (492)
. .+++|+.|++++|.++.. +..+ ..+++|+.|++++|.+.. +|+..+. ++++|+.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~l-------------p~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKF-------------PTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSC-------------CHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCE
T ss_pred ccccCCCcCEEEccCCcCCcc-------------CHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCccE
Confidence 1 345899999999997532 2222 367899999999999886 7333332 2349999
Q ss_pred EEEecccCCCcCCC-CC--CCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccc
Q 011151 347 LLLKNCRNCEHLPP-LG--KLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAI 423 (492)
Q Consensus 347 L~L~~~~~~~~~~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 423 (492)
|+|++|.+. .+|. +. .+++|+.|+|++|. +..++.. +..+++|+.|++++++.+....+.+.+
T Consensus 733 L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp EECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred EECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCcccccccccC
Confidence 999999777 4554 55 89999999999987 4434433 237899999999998877777777888
Q ss_pred cccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 424 KGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 424 ~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
|..+..+++|+.|+|++|.. +.+|..+. ++|+.|++++|+.
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 99999999999999999755 89998765 7999999999985
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.4e-30 Score=276.24 Aligned_cols=299 Identities=21% Similarity=0.178 Sum_probs=194.4
Q ss_pred ccceEEEEEEeecCCC-cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccc-cc
Q 011151 68 EKKILHLLLTLHRGAS-VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK-KI 145 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~l 145 (492)
.++++.+++.+|.+.. .+..+. ++++|+.|++++|. +.+..|.. .+++|++|+++ ++.+. .+
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~----~l~~L~~L~Ls~n~---l~~~~~~~--~l~~L~~L~L~-------~n~l~~~i 285 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAIS----TCTELKLLNISSNQ---FVGPIPPL--PLKSLQYLSLA-------ENKFTGEI 285 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTT----TCSSCCEEECCSSC---CEESCCCC--CCTTCCEEECC-------SSEEEESC
T ss_pred CCCCCEEECcCCcCCCcccHHHh----cCCCCCEEECCCCc---ccCccCcc--ccCCCCEEECc-------CCccCCcc
Confidence 3688999999998874 444454 88889999998887 55545542 66777777777 55554 56
Q ss_pred Cchhhcc-CcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCcccccccccccc
Q 011151 146 PTNIEKL-LHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGE 223 (492)
Q Consensus 146 ~~~~~~l-~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~ 223 (492)
|..+.+. ++|++|++++|.+.+.+|..++++++|++|++++|.+...+|.. +..+++|++|++++|.+.+.+|..+..
T Consensus 286 p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 6555443 67777777777644466666677777777777777644466654 666677777777776665566666555
Q ss_pred cc-cccccceEEeecccCCC-----------------------cCccccccccccCCceEecCCCCCChhhhhHhhhccc
Q 011151 224 LI-NLRRVTKFVVGGGYDRA-----------------------RSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKK 279 (492)
Q Consensus 224 l~-~L~~L~l~~~~~~~~~~-----------------------~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~ 279 (492)
++ +|+.|+++.+......+ .....+..++.|+.+++....-. ......+..+
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l 441 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS----GTIPSSLGSL 441 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE----SCCCGGGGGC
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc----CcccHHHhcC
Confidence 54 55555555444321111 11222334444554444332110 0111346667
Q ss_pred CCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCC
Q 011151 280 KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP 359 (492)
Q Consensus 280 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~ 359 (492)
++|+.|++++|.+. ...+..+..+++|++|++++|.+... + |.++..+++|++|++++|.+.+.+|
T Consensus 442 ~~L~~L~L~~n~l~------------~~~p~~~~~l~~L~~L~L~~N~l~~~-~-p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 442 SKLRDLKLWLNMLE------------GEIPQELMYVKTLETLILDFNDLTGE-I-PSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp TTCCEEECCSSCCC------------SCCCGGGGGCTTCCEEECCSSCCCSC-C-CGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CCCCEEECCCCccc------------CcCCHHHcCCCCceEEEecCCcccCc-C-CHHHhcCCCCCEEEccCCccCCcCC
Confidence 77777777777743 23455666788899999998888752 4 7888889999999999998887777
Q ss_pred C-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcc
Q 011151 360 P-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 360 ~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
. ++.+++|++|++++|.....++..+ ..+++|+.|++++|+
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l------------~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAEL------------GDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGG------------GGCTTCCEEECCSSE
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHH------------cCCCCCCEEECCCCc
Confidence 6 7888999999999988554555433 267778888777653
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.9e-30 Score=265.87 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=112.8
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-C
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~ 146 (492)
.++++++++++.+..++. .+ .++++|++|++++|. +.+..|.+|..+++|++|+++ ++.+..+ |
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls-------~n~l~~~~p 97 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSF----SNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILT-------GNPIQSFSP 97 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCCCCT
T ss_pred CCcCEEECCCCCcCEeChhhc----cCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECC-------CCcccccCh
Confidence 689999999998887554 34 388999999999987 777678888999999999999 8888777 6
Q ss_pred chhhccCcCCEEEccCCCCccccc-hhhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
..+.++++|++|++++|. +..++ ..++++++|++|++++|.+.. .+|..++++++|++|++++|.+....|..+.
T Consensus 98 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred hhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 778899999999999998 66555 568889999999999998544 5788899999999999998877554444443
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=4.5e-29 Score=249.50 Aligned_cols=363 Identities=16% Similarity=0.108 Sum_probs=250.3
Q ss_pred cceEEEEEEeecCCCc-ccccccCccCCCCceEEEeccCCcccccc-ccchhhccCCeeeEEecchhhhhhcccccccc-
Q 011151 69 KKILHLLLTLHRGASV-PISIWGNVKGLRGLRSLLVESDDYSWFSE-VLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI- 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l- 145 (492)
+++++++++++.+..+ +..+. ++++|+.|++++|. +.+ ..+..|..+++|++|+++ ++.+..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~---~~~~i~~~~~~~l~~L~~L~Ls-------~n~l~~~~ 95 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS----RLQDLQFLKVEQQT---PGLVIRNNTFRGLSSLIILKLD-------YNQFLQLE 95 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS----SCTTCCEEECCCCS---TTCEECTTTTTTCTTCCEEECT-------TCTTCEEC
T ss_pred CccCEEEecCCccCcCChhHhc----cCccccEEECcCCc---ccceECcccccccccCCEEeCC-------CCccCccC
Confidence 6889999999888764 34444 88999999999887 543 335668889999999999 7777766
Q ss_pred CchhhccCcCCEEEccCCCCccccchh--hhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCccccccccccc
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLPET--LCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
|..+.++++|++|++++|.+.+.+|.. +..+++|++|++++|.+....|.. +.++++|++|++++|.+....+..+.
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 667888999999999999833345554 788899999999999854454655 78899999999999988777776666
Q ss_pred cc--ccccccceEEeecccCCCcCc-----cccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCC
Q 011151 223 EL--INLRRVTKFVVGGGYDRARSL-----GSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDG 295 (492)
Q Consensus 223 ~l--~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 295 (492)
.+ .+|+.|++..+.........+ ..+..++.|+.+++....-.......+ ......++|+.++++++.+.+.
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH-HHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh-hccccccceeeEeecccccccc
Confidence 55 567777776665543111111 112233456666665443221111111 1122337788888877653221
Q ss_pred chhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccc
Q 011151 296 DEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEG 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~ 374 (492)
......-.........-...++|++|++++|.+.. +++.++..+++|+.|++++|.+.+..+. +..+++|++|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 11000000000000000123689999999999887 5588899999999999999988877664 88999999999999
Q ss_pred cccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCc-ccCC
Q 011151 375 MQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPD-LLLQ 453 (492)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~l~~ 453 (492)
|. +..+....++ .+++|+.|+++++. ++ +..|..+..+++|++|++++| .++.+|. .+..
T Consensus 333 N~-l~~~~~~~~~-----------~l~~L~~L~Ls~N~-l~-----~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 393 (455)
T 3v47_A 333 NF-LGSIDSRMFE-----------NLDKLEVLDLSYNH-IR-----ALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDR 393 (455)
T ss_dssp SC-CCEECGGGGT-----------TCTTCCEEECCSSC-CC-----EECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred Cc-cCCcChhHhc-----------CcccCCEEECCCCc-cc-----ccChhhccccccccEEECCCC-ccccCCHhHhcc
Confidence 97 4554433322 78999999999874 33 334567789999999999995 6677765 4578
Q ss_pred CCCCCeEEEeCCCc
Q 011151 454 KTTLQKLLIGRCPI 467 (492)
Q Consensus 454 l~~L~~L~l~~c~~ 467 (492)
+++|++|++++|+.
T Consensus 394 l~~L~~L~l~~N~l 407 (455)
T 3v47_A 394 LTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCcccEEEccCCCc
Confidence 99999999999874
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.7e-29 Score=262.01 Aligned_cols=328 Identities=15% Similarity=0.180 Sum_probs=258.3
Q ss_pred cCCCcccccccCccCCCCceEEEeccCCccccccc-----------------cchhhc--cCCeeeEEecchhhhhhccc
Q 011151 80 RGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEV-----------------LPQLFD--KLTCLRALKLEVRQRWLCKN 140 (492)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------------~~~~~~--~~~~L~~L~L~~~~~~~~~~ 140 (492)
.+..+|..+. ++++|++|++++|. +.+. +|..++ .+++|++|+++ ++
T Consensus 194 ~l~~ip~~l~----~l~~L~~L~Ls~n~---l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~-------~n 259 (636)
T 4eco_A 194 NITFVSKAVM----RLTKLRQFYMGNSP---FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY-------NC 259 (636)
T ss_dssp EEEEECGGGG----GCTTCCEEEEESCC---CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-------CC
T ss_pred CCccCCHHHh----cccCCCEEECcCCc---cccccccccccccccchhcccCchhhhhcccCCCCEEEec-------CC
Confidence 3333455555 99999999999998 6663 788888 99999999999 66
Q ss_pred c-ccccCchhhccCcCCEEEccCCC-Ccc-ccchhhhcC------CCCCeeecCcccccccccc--cccCCCCCcEEecC
Q 011151 141 F-IKKIPTNIEKLLHLKYLSLCGQR-EIE-KLPETLCEL------YNLERLNITSCNHLRELPQ--GIGKLRKLMYLDND 209 (492)
Q Consensus 141 ~-~~~l~~~~~~l~~L~~L~L~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~ 209 (492)
. .+.+|..+.++++|++|++++|. +.+ .+|..++++ ++|++|++++|. +..+|. .++++++|++|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCc
Confidence 5 56789999999999999999998 555 799988887 999999999999 559998 89999999999999
Q ss_pred CCcccccccccccccccccccceEEeecccCCCcCccccccccc-cCCceEecCC--CCCChhhhhHhhhcc--cCCcce
Q 011151 210 DTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL-LRECSIRGLG--GVSDAGEARRAELEK--KKNLVE 284 (492)
Q Consensus 210 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-L~~l~~~~~~--~~~~~~~~~~~~l~~--~~~L~~ 284 (492)
+|.+.+.+| .+..+++|+.|++..+.... ....+..++. |+.+.+.... .++ ..+.. +++|+.
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~~L~~L~Ls~N~l~~lp-------~~~~~~~l~~L~~ 406 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQITE----IPANFCGFTEQVENLSFAHNKLKYIP-------NIFDAKSVSVMSA 406 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEEE----CCTTSEEECTTCCEEECCSSCCSSCC-------SCCCTTCSSCEEE
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCcccc----ccHhhhhhcccCcEEEccCCcCcccc-------hhhhhcccCccCE
Confidence 999877888 89999999999999887663 2333555555 6666665433 232 22333 448999
Q ss_pred EecccccCCCCchhhHhhhhHHHHhhhcC-------CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc
Q 011151 285 LGLHFDRLRDGDEEQARRRESERLLEALG-------PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357 (492)
Q Consensus 285 L~l~~~~l~~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~ 357 (492)
|++++|.+++ ..+..+. .+++|++|++++|.+.. +|+..+..+++|+.|++++|.+. .
T Consensus 407 L~Ls~N~l~~------------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 407 IDFSYNEIGS------------VDGKNFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp EECCSSCTTT------------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred EECcCCcCCC------------cchhhhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCCC-C
Confidence 9999999643 2344454 66799999999999987 85556667999999999999877 4
Q ss_pred CCC--CC-------CCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcccccccc
Q 011151 358 LPP--LG-------KLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEII 428 (492)
Q Consensus 358 ~~~--l~-------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 428 (492)
+|. +. ++++|++|++++|. ++.++..+.. ..+++|+.|+++++. ++ + +|..+.
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N~-l~-----~-ip~~~~ 533 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRA----------TTLPYLVGIDLSYNS-FS-----K-FPTQPL 533 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGST----------TTCTTCCEEECCSSC-CS-----S-CCCGGG
T ss_pred cCHHHhccccccccccCCccEEECcCCc-CCccChhhhh----------ccCCCcCEEECCCCC-CC-----C-cChhhh
Confidence 443 22 23399999999998 5566654431 178999999999874 33 3 567788
Q ss_pred CCCCcceEeec------CCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 429 IMPRLSFLEIS------GCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 429 ~~~~L~~L~l~------~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
.+++|+.|+++ +|...+.+|..+..+++|++|++++|..
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 99999999995 4455667899999999999999999986
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=7.2e-29 Score=257.12 Aligned_cols=274 Identities=17% Similarity=0.053 Sum_probs=185.0
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-C
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~ 146 (492)
..+++++++++.+..++ ..+. ++++|++|++++|. +....|..|..+++|++|+++ ++.+..+ |
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFS----RLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLT-------ANPLIFMAE 98 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTST----TCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCSEECT
T ss_pred CcCcEEEccCCccCcCChhHhc----cCccceEEECCCCc---cceeChhhccCccccCeeeCC-------CCcccccCh
Confidence 68999999999998753 3444 89999999999998 777778889999999999999 8888776 5
Q ss_pred chhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
..+.++++|++|++++|. +..+ |..+.++++|++|++++|.+...-+..+..+++|++|++++|.+....|..+..++
T Consensus 99 ~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 679999999999999999 6665 56688999999999999994442223355599999999999988766677788888
Q ss_pred ccc--ccceEEeecccCCCcCcccc-----------------cccc-------------------------------ccC
Q 011151 226 NLR--RVTKFVVGGGYDRARSLGSL-----------------KKLN-------------------------------LLR 255 (492)
Q Consensus 226 ~L~--~L~l~~~~~~~~~~~~~~~l-----------------~~L~-------------------------------~L~ 255 (492)
+|+ .|++..+......+..+... ..+. .++
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888 56555554432111111100 0000 111
Q ss_pred CceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCc
Q 011151 256 ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPR 335 (492)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~ 335 (492)
.+.+....- . ......+..+++|+.|++++|.++. ++..+..+++|++|++++|.+.. +++
T Consensus 258 ~L~l~~n~l-~---~~~~~~~~~l~~L~~L~l~~n~l~~-------------lp~~l~~l~~L~~L~l~~n~l~~--~~~ 318 (606)
T 3t6q_A 258 SINLQKHYF-F---NISSNTFHCFSGLQELDLTATHLSE-------------LPSGLVGLSTLKKLVLSANKFEN--LCQ 318 (606)
T ss_dssp EEECTTCCC-S---SCCTTTTTTCTTCSEEECTTSCCSC-------------CCSSCCSCTTCCEEECTTCCCSB--GGG
T ss_pred EEEeecCcc-C---ccCHHHhccccCCCEEeccCCccCC-------------CChhhcccccCCEEECccCCcCc--Cch
Confidence 122211110 0 0011235667778888888777532 34455666777777777776665 434
Q ss_pred hhhhccccccEEEEecccCCCcCCC--CCCCCccceeeccccc
Q 011151 336 NWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 336 ~~~~~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L~l~~~~ 376 (492)
..+..+++|++|++++|.....++. +..+++|++|++++|.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 5566666667777666655544433 5556666666666655
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.1e-29 Score=265.92 Aligned_cols=314 Identities=13% Similarity=0.138 Sum_probs=221.9
Q ss_pred cchhhccCCeeeEEecchhhhhhccccccc------------------cCchhh--ccCcCCEEEccCCCCccccchhhh
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKK------------------IPTNIE--KLLHLKYLSLCGQREIEKLPETLC 174 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~lp~~~~ 174 (492)
+|..|+++++|++|+|+ ++.+.. +|..++ ++++|++|++++|.+.+.+|..++
T Consensus 440 IP~~l~~L~~L~~L~Ls-------~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFA-------NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEE-------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred hhHHHhcCCCCCEEECc-------CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 77788999999999999 788877 888877 999999999999987788998899
Q ss_pred cCCCCCeeecCccc-ccc-cccccccCCC-------CCcEEecCCCcccccccc--cccccccccccceEEeecccCCCc
Q 011151 175 ELYNLERLNITSCN-HLR-ELPQGIGKLR-------KLMYLDNDDTWFLRYLPV--GIGELINLRRVTKFVVGGGYDRAR 243 (492)
Q Consensus 175 ~l~~L~~L~l~~~~-~~~-~lp~~~~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~ 243 (492)
++++|++|++++|. +.. .+|..++.++ +|++|++++|.+. .+|. .+..+++|+.|+++.+.... ++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-ch-
Confidence 99999999999997 444 5777665544 8999999999876 7887 78888899998888776552 22
Q ss_pred CccccccccccCCceEecCCCCCChhhhhHhhhcccCC-cceEecccccCCCCchhhHhh------------h-hHH---
Q 011151 244 SLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKN-LVELGLHFDRLRDGDEEQARR------------R-ESE--- 306 (492)
Q Consensus 244 ~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~~------------~-~~~--- 306 (492)
.+..++.|+.+.+....-. . ....+..+++ |+.|++++|.++..+...... . ...
T Consensus 590 ---~~~~L~~L~~L~Ls~N~l~-~----lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 590 ---AFGTNVKLTDLKLDYNQIE-E----IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp ---CCCTTSEESEEECCSSCCS-C----CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred ---hhcCCCcceEEECcCCccc-c----chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 4555666666555443221 1 1133666666 777777777765332100000 0 000
Q ss_pred HHhhhcC--CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CC--------CCCccceeecccc
Q 011151 307 RLLEALG--PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LG--------KLPSLESLYIEGM 375 (492)
Q Consensus 307 ~~~~~l~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~--------~l~~L~~L~l~~~ 375 (492)
.++..+. ..++|+.|++++|.+.. +|+..+..+++|+.|+|++|.+. .+|. .. ++++|+.|+|++|
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred cchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence 0001111 23478888888888886 73444457889999999988766 4443 22 2348999999988
Q ss_pred ccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecC------CCCcccCCc
Q 011151 376 QSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG------CCKLKALPD 449 (492)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~l~~ 449 (492)
. +..++..+.. ..+++|+.|+++++. ++. +|..+..+++|+.|+|++ |...+.+|.
T Consensus 739 ~-L~~lp~~l~~----------~~l~~L~~L~Ls~N~-L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 739 K-LTSLSDDFRA----------TTLPYLSNMDVSYNC-FSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp C-CCCCCGGGST----------TTCTTCCEEECCSSC-CSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred C-CccchHHhhh----------ccCCCcCEEEeCCCC-CCc------cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 6 5555544331 168899999998874 332 566778999999999976 444567888
Q ss_pred ccCCCCCCCeEEEeCCCc
Q 011151 450 LLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 450 ~l~~l~~L~~L~l~~c~~ 467 (492)
.+.++++|+.|++++|..
T Consensus 801 ~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TGGGCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEECCCCCC
Confidence 899999999999999975
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=249.47 Aligned_cols=342 Identities=17% Similarity=0.117 Sum_probs=232.4
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
+++++++++++.+..++ ..+. ++++|++|++++|. +.+..|..|+.+++|++|+++ ++.+..+|.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDIL----SLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLS-------HNKLVKISC 86 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHT----TCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECC-------SSCCCEEEC
T ss_pred ccccEEECCCCcccccChhhcc----ccccccEEecCCCc---cCCcChHHhhcccCCCEEecC-------CCceeecCc
Confidence 68999999999998755 3454 89999999999998 778678889999999999999 889999887
Q ss_pred hhhccCcCCEEEccCCCCcc-ccchhhhcCCCCCeeecCcccccccccccccCCCCC--cEEecCCCcc--ccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIE-KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKL--MYLDNDDTWF--LRYLPVGIG 222 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~ 222 (492)
. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ ....|..+.
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccc
Confidence 6 89999999999999333 467889999999999999998433 345666666 8888888766 344443333
Q ss_pred c--------------------------cccccccceE-------------------------------------------
Q 011151 223 E--------------------------LINLRRVTKF------------------------------------------- 233 (492)
Q Consensus 223 ~--------------------------l~~L~~L~l~------------------------------------------- 233 (492)
. +++|+.|++.
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 2 3333333333
Q ss_pred --------------EeecccCCCcCccc--cccccccCCceEecCCC-CCChhhhhHh---------------------h
Q 011151 234 --------------VVGGGYDRARSLGS--LKKLNLLRECSIRGLGG-VSDAGEARRA---------------------E 275 (492)
Q Consensus 234 --------------~~~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~-~~~~~~~~~~---------------------~ 275 (492)
.+.....++..+.. ...++.|+.+.+..... ++.. .... .
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~--~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS--YIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTH--HHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchh--hhhcccccCceeEEEcCCCccccccc
Confidence 33322111111100 02333333333222111 1100 0000 0
Q ss_pred hcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcc-ccCchhhhccccccEEEEecccC
Q 011151 276 LEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN-VVPRNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 276 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~l~~~~~~~l~~L~~L~L~~~~~ 354 (492)
...+++|+.|++++|.+++ ..+..+..+++|++|++++|.+..- .+ |..+..+++|+.|++++|.+
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTD------------TVFENCGHLTELETLILQMNQLKELSKI-AEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp CSSCCCCCEEECCSSCCCT------------TTTTTCCCCSSCCEEECCSSCCCBHHHH-HHHHTTCTTCCEEECCSSCC
T ss_pred hhhCCcccEEEeECCccCh------------hhhhhhccCCCCCEEEccCCccCccccc-hHHHhhCCCCCEEECCCCcC
Confidence 1466777888888777532 2345667778888888888887750 13 45577888888888888877
Q ss_pred CCcCCC--CCCCCccceeeccccccceeecccccCCcCCCCCCccccc-ccccceeccCcccccccccCccccccccCCC
Q 011151 355 CEHLPP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAF-PKLKHLKFYDMEELEEWDFGTAIKGEIIIMP 431 (492)
Q Consensus 355 ~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 431 (492)
.+.+|. +..+++|++|++++|.....++. .+ ++|+.|++++|. ++ .+|..+..++
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------~l~~~L~~L~Ls~N~-l~------~ip~~~~~l~ 444 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFR---------------CLPPRIKVLDLHSNK-IK------SIPKQVVKLE 444 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGG---------------SCCTTCCEEECCSSC-CC------CCCGGGGGCT
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhh---------------hhcccCCEEECCCCc-cc------ccchhhhcCC
Confidence 664443 66778888888888763221111 23 588999888874 43 3556667899
Q ss_pred CcceEeecCCCCcccCCcc-cCCCCCCCeEEEeCCCc
Q 011151 432 RLSFLEISGCCKLKALPDL-LLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 432 ~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~ 467 (492)
+|+.|++++| .++.+|.. +..+++|++|++++|+.
T Consensus 445 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 445 ALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 9999999995 67788876 88899999999999985
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.2e-29 Score=255.32 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=116.8
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP- 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~- 146 (492)
..+++++++++.+..++. .+. ++++|++|++++|. +.+..+.+|+.+++|++|+++ ++.+..++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 93 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLAL 93 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTT----TCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECT
T ss_pred ccccEEEccCCccCccChhHhh----CCCCceEEECCCCc---CCccCcccccCchhCCEEeCc-------CCcCCccCH
Confidence 689999999999877543 344 89999999999998 777667788999999999999 88888776
Q ss_pred chhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 224 (492)
..+.++++|++|++++|. +..++. .++++++|++|++++|.+.. .+|..++++++|++|++++|.+....+..+..+
T Consensus 94 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred hhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 568899999999999998 777765 58889999999999998444 478889999999999999997765555555555
Q ss_pred ccc
Q 011151 225 INL 227 (492)
Q Consensus 225 ~~L 227 (492)
.+|
T Consensus 173 ~~L 175 (570)
T 2z63_A 173 HQM 175 (570)
T ss_dssp HTC
T ss_pred hcc
Confidence 555
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.8e-28 Score=257.63 Aligned_cols=353 Identities=17% Similarity=0.143 Sum_probs=231.1
Q ss_pred cceEEEEEEeecCCCcccc-cccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPIS-IWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
.++++++++++.+..++.. +. ++++|++|++++|. +.+..|.+|+.+++|++|+++ ++.+..+|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFT----RYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQ-------HNELSQLSD 90 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGG----GGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECC-------SSCCCCCCT
T ss_pred CCCcEEECCCCCCCCcCHHHHh----CCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECC-------CCccCccCh
Confidence 6899999999999886653 44 89999999999998 788778889999999999999 889999987
Q ss_pred -hhhccCcCCEEEccCCCCccccc-hhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccc--c
Q 011151 148 -NIEKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG--E 223 (492)
Q Consensus 148 -~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~ 223 (492)
.+.++++|++|++++|. +..++ ..++++++|++|++++|......|..++++++|++|++++|.+....+..+. .
T Consensus 91 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 59999999999999999 66665 5689999999999999996666677789999999999999987665555443 5
Q ss_pred cccccccceEEeecccCCCcCcccccccc------------------------ccCCceEecCCCCCChhhhhHhhhccc
Q 011151 224 LINLRRVTKFVVGGGYDRARSLGSLKKLN------------------------LLRECSIRGLGGVSDAGEARRAELEKK 279 (492)
Q Consensus 224 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~------------------------~L~~l~~~~~~~~~~~~~~~~~~l~~~ 279 (492)
+++|+.|++..+......+..+..+..++ .|+.+.+....-.. .....+..+
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~----~~~~~~~~l 245 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST----TSNTTFLGL 245 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE----ECTTTTGGG
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc----cChhHhhcc
Confidence 58899999887765542222233333221 22222222211100 001123333
Q ss_pred C--CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC-
Q 011151 280 K--NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE- 356 (492)
Q Consensus 280 ~--~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~- 356 (492)
+ +|+.|++++|.+++. .+..+..+++|++|++++|.+.. +++..+..+++|+.|++++|....
T Consensus 246 ~~~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVV------------GNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp GGSCCCEEECTTSCCCEE------------CTTTTTTCTTCCEEECCSCCBSE--ECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred CcCCCCEEECCCCCcCcc------------CcccccCcccccEeeCCCCccCc--cChhhhcCCCCccEEeccchhhhcc
Confidence 3 377777776664321 23345666777777777776665 435566666667777666553322
Q ss_pred ----cCC-----CCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcc---------------
Q 011151 357 ----HLP-----PLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME--------------- 412 (492)
Q Consensus 357 ----~~~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------- 412 (492)
.+| .+..+++|++|++++|. +..+.... ...+++|++|++++|.
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNM-----------FTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTT-----------TTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred cccccccccChhhcccCCCCCEEECCCCc-cCCCChhH-----------hccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 112 24456666666666665 22222211 1245566666655442
Q ss_pred --cccc-----cccCccccccccCCCCcceEeecCCCCcccCC-cccCCCCCCCeEEEeCCC
Q 011151 413 --ELEE-----WDFGTAIKGEIIIMPRLSFLEISGCCKLKALP-DLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 413 --~l~~-----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~ 466 (492)
.++. ..+.+..|..+..+++|+.|++++|...+.+| ..+..+++|++|++++|.
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 1111 11223334556677778888887765444454 456667777777777775
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.2e-28 Score=253.45 Aligned_cols=276 Identities=15% Similarity=0.056 Sum_probs=202.4
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~ 151 (492)
+++..+.++..+|..+. +.++.|++++|. +.+..|..|..+++|++|+++ ++.+..+ |..+.+
T Consensus 16 ~~~c~~~~l~~iP~~l~------~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~~~ 79 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLP------NSTECLEFSFNV---LPTIQNTTFSRLINLTFLDLT-------RCQIYWIHEDTFQS 79 (606)
T ss_dssp EEECTTSCCSSCCTTSC------TTCCEEECTTCC---CSEECTTTSTTCTTCSEEECT-------TCCCCEECTTTTTT
T ss_pred eEECCCCCcccCcCCCC------CcCcEEEccCCc---cCcCChhHhccCccceEEECC-------CCccceeChhhccC
Confidence 56666777777887765 579999999998 778678889999999999999 8888776 567999
Q ss_pred cCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVT 231 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 231 (492)
+++|++|++++|.+....|..++++++|++|++++|.+....|..++++++|++|++++|.+....+..+..+++|+.|+
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred ccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence 99999999999994445577899999999999999994444467789999999999999988663334444599999999
Q ss_pred eEEeecccCCCcCccccccccccC--CceEecCC--CCCChh-h------------------------------------
Q 011151 232 KFVVGGGYDRARSLGSLKKLNLLR--ECSIRGLG--GVSDAG-E------------------------------------ 270 (492)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~L~~L~--~l~~~~~~--~~~~~~-~------------------------------------ 270 (492)
+..+..... ....+..++.|+ .+.+.... ..+... .
T Consensus 160 L~~n~l~~~---~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 160 FQNNAIHYL---SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp CCSSCCCEE---CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred cccCccccc---ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 988866531 122344444444 23332211 111000 0
Q ss_pred ------hhHhhhcccC--CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccc
Q 011151 271 ------ARRAELEKKK--NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLT 342 (492)
Q Consensus 271 ------~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~ 342 (492)
.....+.++. +|+.+++++|.+++. .+..+..+++|++|++++|.+.. + |..+..++
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~--l-p~~l~~l~ 301 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNI------------SSNTFHCFSGLQELDLTATHLSE--L-PSGLVGLS 301 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC------------CTTTTTTCTTCSEEECTTSCCSC--C-CSSCCSCT
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCcc------------CHHHhccccCCCEEeccCCccCC--C-Chhhcccc
Confidence 0000111111 567777777775432 23346778999999999999987 8 77889999
Q ss_pred cccEEEEecccCCCcCCC-CCCCCccceeeccccccceeec
Q 011151 343 NLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 343 ~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
+|++|++++|.+....+. +..+++|++|++++|.....++
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 999999999988776554 7889999999999997443443
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-27 Score=245.08 Aligned_cols=340 Identities=15% Similarity=0.094 Sum_probs=228.7
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
++++.+++++|.+..++. .+. ++++|++|++++|. +.+..|++|..+++|++|+++ ++.+..+|.
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVS-------HNRLQNISC 117 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT----TCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECS
T ss_pred CCcCEEECCCCCccccChhhhc----cCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECC-------CCcCCccCc
Confidence 688899999998887553 444 88899999999887 777667888889999999998 888888887
Q ss_pred hhhccCcCCEEEccCCCCcccc--chhhhcCCCCCeeecCcccccccccccccCCCCC--cEEecCCCcc--cccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKL--PETLCELYNLERLNITSCNHLRELPQGIGKLRKL--MYLDNDDTWF--LRYLPVGI 221 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~l 221 (492)
. .+++|++|++++|. +..+ |..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ ....|..+
T Consensus 118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccc
Confidence 6 78899999999998 6654 4678889999999999887433 234444555 8888888766 44444333
Q ss_pred ccc--------------------------c--------------------------------------------------
Q 011151 222 GEL--------------------------I-------------------------------------------------- 225 (492)
Q Consensus 222 ~~l--------------------------~-------------------------------------------------- 225 (492)
..+ +
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 322 1
Q ss_pred -----cccccceEEeecccCCCcCccc--cccccccCCceEecCCC-CCChhhhhH---------------------hhh
Q 011151 226 -----NLRRVTKFVVGGGYDRARSLGS--LKKLNLLRECSIRGLGG-VSDAGEARR---------------------AEL 276 (492)
Q Consensus 226 -----~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~-~~~~~~~~~---------------------~~l 276 (492)
+|+.|++..+.....++..+.. ...++.|+.+.+..... ++. .... ...
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 349 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK--EALYSVFAEMNIKMLSISDTPFIHMVCP 349 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH--HHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh--hhhhhhhccCcceEEEccCCCcccccCc
Confidence 3444444444333211111100 02222222222111110 000 0000 001
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC--chhhhccccccEEEEecccC
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP--RNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~--~~~~~~l~~L~~L~L~~~~~ 354 (492)
..+++|+.|++++|.++ ...+..+..+++|++|++++|.+.. ++ |..+..+++|+.|++++|.+
T Consensus 350 ~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT------------DSVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SSCCCCCEEECCSSCCC------------TTTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTTSCC
T ss_pred cCCCCceEEECCCCccc------------cchhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCCCcC
Confidence 56778888888888754 2345567778888999998888776 41 24567888899999988877
Q ss_pred CCcCCC--CCCCCccceeeccccccceeecccccCCcCCCCCCccccc-ccccceeccCcccccccccCccccccccCCC
Q 011151 355 CEHLPP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAF-PKLKHLKFYDMEELEEWDFGTAIKGEIIIMP 431 (492)
Q Consensus 355 ~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 431 (492)
...+|. +..+++|++|++++|.....++ . .+ ++|+.|+++++. ++. +|..+..++
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~-----------~l~~~L~~L~L~~N~-l~~------ip~~~~~l~ 473 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVF----R-----------CLPPKVKVLDLHNNR-IMS------IPKDVTHLQ 473 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGG----S-----------SCCTTCSEEECCSSC-CCC------CCTTTTSSC
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchh----h-----------hhcCcCCEEECCCCc-Ccc------cChhhcCCC
Confidence 764543 6778889999998887322111 1 33 589999998873 543 555666899
Q ss_pred CcceEeecCCCCcccCCcc-cCCCCCCCeEEEeCCCc
Q 011151 432 RLSFLEISGCCKLKALPDL-LLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 432 ~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~ 467 (492)
+|+.|++++ +.++.+|.. +..+++|+.|++++|+.
T Consensus 474 ~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 474 ALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999999999 467788876 88899999999999985
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5.4e-28 Score=247.57 Aligned_cols=360 Identities=18% Similarity=0.196 Sum_probs=242.5
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
+.+++++++++.+..++ ..+. ++++|++|++++|. +.+..|.+|..+++|++|+++ ++.+..++.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 91 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLS-------DNHLSSLSS 91 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS----SCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TSCCCSCCH
T ss_pred CCccEEECcCCccCccChhhhh----cCCcccEEECCCCC---cCccChhhccccccCCEEECC-------CCccCccCH
Confidence 68999999999987743 3444 89999999999998 777677889999999999999 888888876
Q ss_pred h-hhccCcCCEEEccCCCCcc--ccchhhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccccccccccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIE--KLPETLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPVGIGE 223 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 223 (492)
. +.++++|++|++++|. +. ..|..+.++++|++|++++|.....+| ..++++++|++|++++|.+.+..|..+..
T Consensus 92 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 5 8999999999999998 55 456678899999999999998666665 46888999999999999887777777666
Q ss_pred cccccccceE------------------------EeecccCC--C-cCcccc-------------------------ccc
Q 011151 224 LINLRRVTKF------------------------VVGGGYDR--A-RSLGSL-------------------------KKL 251 (492)
Q Consensus 224 l~~L~~L~l~------------------------~~~~~~~~--~-~~~~~l-------------------------~~L 251 (492)
+++|++|++. .+...... + .....+ ..+
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 5555555444 33322100 0 000000 001
Q ss_pred cccCCceEecCC-----CC------------------------CCh--------------------------hhhhHhhh
Q 011151 252 NLLRECSIRGLG-----GV------------------------SDA--------------------------GEARRAEL 276 (492)
Q Consensus 252 ~~L~~l~~~~~~-----~~------------------------~~~--------------------------~~~~~~~l 276 (492)
..|+.+.+..+. .. +.. .......+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 111111111110 00 000 00000112
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHH---hhhcCCCCCccEEEEeecCCCccccCc--hhhhccccccEEEEec
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERL---LEALGPPPNLKELVIDEYRGRRNVVPR--NWVMSLTNLRALLLKN 351 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~L~~ 351 (492)
..+++|+.|++++|.++ ... +..+..+++|++|++++|.+.. +++ ..+..+++|+.|++++
T Consensus 331 ~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMV------------EEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp HHCTTCCEEECCSSCCC------------HHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTT
T ss_pred hcCccccEEEccCCccc------------cccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCC
Confidence 45777888888887743 222 2336778999999999998877 522 3577899999999999
Q ss_pred ccCCCcCCCCCCCCccceeeccccccceeecccccCCc------CCCCCCcccccccccceeccCcccccccccCccccc
Q 011151 352 CRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVE------SDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKG 425 (492)
Q Consensus 352 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 425 (492)
|.+......+..+++|++|++++|. ++.++..+.... .-........+++|++|+++++. ++. +|.
T Consensus 397 N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~------ip~ 468 (549)
T 2z81_A 397 NTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKT------LPD 468 (549)
T ss_dssp CCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSS------CCC
T ss_pred CCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCc------CCC
Confidence 9776433347788999999999887 444332211000 00111122367888888888874 443 333
Q ss_pred cccCCCCcceEeecCCCCcccC-CcccCCCCCCCeEEEeCCCc
Q 011151 426 EIIIMPRLSFLEISGCCKLKAL-PDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 426 ~~~~~~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~ 467 (492)
...+++|+.|++++| .++.+ |..+..+++|+.|++++|+.
T Consensus 469 -~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 469 -ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 346899999999996 45555 45588899999999999984
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1e-27 Score=230.78 Aligned_cols=302 Identities=18% Similarity=0.214 Sum_probs=196.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++++++.++.+..++. +. .+++|+.|++++|. +.. ++. +..+++|++|+++ ++.+..++ .
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~----~~~~L~~L~l~~n~---i~~-~~~-~~~l~~L~~L~L~-------~n~i~~~~-~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IE----YLTNLEYLNLNGNQ---ITD-ISP-LSNLVKLTNLYIG-------TNKITDIS-A 105 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCG-G
T ss_pred ccccEEEEeCCccccchh-hh----hcCCccEEEccCCc---ccc-chh-hhcCCcCCEEEcc-------CCcccCch-H
Confidence 456666666666655432 32 56666666666665 444 233 5666666666666 55555553 3
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..++. +..+++|++|++++|.....++. +..+++|++|++++|.+....+ +..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence 5666666666666666 555554 56666666666666653444333 5666666666666665432211 44455555
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|++..+... .. ..+..+++|+.+++++|.+.+..
T Consensus 181 ~L~l~~n~l~---------------------------~~------~~~~~l~~L~~L~l~~n~l~~~~------------ 215 (347)
T 4fmz_A 181 SLSLNYNQIE---------------------------DI------SPLASLTSLHYFTAYVNQITDIT------------ 215 (347)
T ss_dssp EEECTTSCCC---------------------------CC------GGGGGCTTCCEEECCSSCCCCCG------------
T ss_pred EEEccCCccc---------------------------cc------ccccCCCccceeecccCCCCCCc------------
Confidence 5544433211 10 12556778888888888764331
Q ss_pred hhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCC
Q 011151 309 LEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGV 388 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 388 (492)
.+..+++|++|++++|.+.. + +. +..+++|+.|++++|.+.. ++.+..+++|++|++++|. +..++ .
T Consensus 216 --~~~~~~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~--~--- 282 (347)
T 4fmz_A 216 --PVANMTRLNSLKIGNNKITD--L-SP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS--V--- 282 (347)
T ss_dssp --GGGGCTTCCEEECCSSCCCC--C-GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG--G---
T ss_pred --hhhcCCcCCEEEccCCccCC--C-cc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh--h---
Confidence 15667889999999998877 5 43 7889999999999986554 4567888999999999986 44432 1
Q ss_pred cCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 389 ESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 389 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
...+++|+.|++++|. +.. ..|..+..+++|+.|++++|+ ++.++. +..+++|++|++++|+.
T Consensus 283 --------~~~l~~L~~L~L~~n~-l~~-----~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 283 --------LNNLSQLNSLFLNNNQ-LGN-----EDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp --------GGGCTTCSEEECCSSC-CCG-----GGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred --------hcCCCCCCEEECcCCc-CCC-----cChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 2378899999999875 332 234567789999999999975 566655 77899999999999973
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.5e-27 Score=247.27 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=129.1
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~ 150 (492)
+.++.++.++..+|..+. +.++.|++++|. +.+..+..|..+++|++|+++ ++.+..+ |..+.
T Consensus 14 ~~~~c~~~~l~~ip~~~~------~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP------SSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLS-------RCEIETIEDKAWH 77 (606)
T ss_dssp TEEECTTSCCSSCCTTSC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECTTTTT
T ss_pred CceEccCCCcccCCCCCC------CCcCEEECCCCC---cCEeChhhccCCccCcEEeCC-------CCcccccCHHHhh
Confidence 357777788888887654 889999999998 788677789999999999999 8888887 45689
Q ss_pred ccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc-ccccccccccccc
Q 011151 151 KLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR-YLPVGIGELINLR 228 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~ 228 (492)
++++|++|++++|. +..+ |..++++++|++|++++|.+....+..++++++|++|++++|.+.. .+|..+.++++|+
T Consensus 78 ~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 78 GLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred chhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 99999999999999 6655 7789999999999999999444444779999999999999998865 5789999999999
Q ss_pred ccceEEeeccc
Q 011151 229 RVTKFVVGGGY 239 (492)
Q Consensus 229 ~L~l~~~~~~~ 239 (492)
+|+++.+....
T Consensus 157 ~L~Ls~n~l~~ 167 (606)
T 3vq2_A 157 HVDLSYNYIQT 167 (606)
T ss_dssp EEECCSSCCCE
T ss_pred EEEccCCccee
Confidence 99998876654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=247.37 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=124.7
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~ 150 (492)
++++++++.+..+|..+. ++|+.|++++|. +.+..|..|..+++|++|+++ ++.+..+ |..+.
T Consensus 3 ~~l~ls~n~l~~ip~~~~------~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS------QKTTILNISQNY---ISELWTSDILSLSKLRILIIS-------HNRIQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCSCC------TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECC-------SSCCCEEEGGGGT
T ss_pred ceEecCCCCccccccccc------ccccEEECCCCc---ccccChhhccccccccEEecC-------CCccCCcChHHhh
Confidence 578899999998887653 899999999998 778677889999999999999 8888887 67899
Q ss_pred ccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccc--
Q 011151 151 KLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL-- 227 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-- 227 (492)
++++|++|++++|. ++.+|.. .+++|++|++++|.+.. .+|..++++++|++|++++|.+.. ..+..+++|
T Consensus 67 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L 140 (520)
T 2z7x_B 67 FNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNI 140 (520)
T ss_dssp TCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCE
T ss_pred cccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccccee
Confidence 99999999999999 7889876 89999999999999554 467889999999999999997754 346667777
Q ss_pred cccceEEeec
Q 011151 228 RRVTKFVVGG 237 (492)
Q Consensus 228 ~~L~l~~~~~ 237 (492)
+.|++..+..
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 9999988866
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.3e-27 Score=252.99 Aligned_cols=349 Identities=19% Similarity=0.178 Sum_probs=246.2
Q ss_pred ccceEEEEEEeecCCCc-ccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-
Q 011151 68 EKKILHLLLTLHRGASV-PISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI- 145 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l- 145 (492)
.+++++|++++|.+..+ +..+. ++++|++|++++|.. .....|.+|.++++|++|+|+ ++.+..+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~----~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls-------~N~l~~~~ 89 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFP----FLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLG-------SSKIYFLH 89 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCS----SCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECT-------TCCCCEEC
T ss_pred CCCcCEEECCCCcCCccChhHCc----ccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECC-------CCcCcccC
Confidence 37999999999998874 34444 999999999999951 333347889999999999999 8888776
Q ss_pred CchhhccCcCCEEEccCCCCccccchh--hhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCccccccccccc
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLPET--LCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
|..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+....+ ..++++++|++|++++|.+....+..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 778999999999999999944456665 8899999999999999544333 5689999999999999988777777777
Q ss_pred cc--ccccccceEEeecccCCCcCcccccc-c--cccCCceEecCCCCCChhh---------------------------
Q 011151 223 EL--INLRRVTKFVVGGGYDRARSLGSLKK-L--NLLRECSIRGLGGVSDAGE--------------------------- 270 (492)
Q Consensus 223 ~l--~~L~~L~l~~~~~~~~~~~~~~~l~~-L--~~L~~l~~~~~~~~~~~~~--------------------------- 270 (492)
.+ ++|+.|++..+......+..+..+.. + ..|+.+.+...........
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 76 78999988887665422222222211 0 1244444433211000000
Q ss_pred -----hhHhhhcc--cCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhcccc
Q 011151 271 -----ARRAELEK--KKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTN 343 (492)
Q Consensus 271 -----~~~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~ 343 (492)
.....+.+ .++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.. +++..+..+++
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~ 315 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFS------------LNSRVFETLKDLKVLNLAYNKINK--IADEAFYGLDN 315 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCE------------ECSCCSSSCCCCCEEEEESCCCCE--ECTTTTTTCSS
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccc------------cChhhhhcCCCCCEEECCCCcCCC--CChHHhcCCCC
Confidence 00111222 2678999998888532 234556778999999999999887 65777889999
Q ss_pred ccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcc
Q 011151 344 LRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTA 422 (492)
Q Consensus 344 L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 422 (492)
|++|++++|.+....+. +..+++|+.|++++|. +..++...+ ..+++|+.|+++++. ++.+.
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~-----------~~l~~L~~L~Ls~N~-l~~i~---- 378 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF-----------KFLEKLQTLDLRDNA-LTTIH---- 378 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS-----------CSCCCCCEEEEETCC-SCCCS----
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh-----------cCCCCCCEEECCCCC-CCccc----
Confidence 99999999987766554 8889999999999986 544443322 267889998888764 33221
Q ss_pred ccccccCCCCcceEeecCCCCcccCCc----------------------ccCCCCCCCeEEEeCCCc
Q 011151 423 IKGEIIIMPRLSFLEISGCCKLKALPD----------------------LLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 423 ~~~~~~~~~~L~~L~l~~c~~l~~l~~----------------------~l~~l~~L~~L~l~~c~~ 467 (492)
.+++|+.|++++| .++.+|. .+..+++|+.|++++|..
T Consensus 379 ------~~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 379 ------FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp ------SCCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ------CCCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 2455555555553 2233322 234688899999988863
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=241.04 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=112.3
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~ 151 (492)
.+..+++.+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..+ |..+.+
T Consensus 15 ~v~c~~~~l~~ip~~~~------~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP------TETRLLDLGKNR---IKTLNQDEFASFPHLEELELN-------ENIVSAVEPGAFNN 78 (477)
T ss_dssp EEECCSCCCSSCCSCCC------TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECTTTTTT
T ss_pred EEEeCCCCcCcCCCCCC------CCCcEEECCCCc---cceECHhHccCCCCCCEEECC-------CCccCEeChhhhhC
Confidence 45556666776676553 578888888887 777666778888888888888 7777776 566888
Q ss_pred cCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRV 230 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 230 (492)
+++|++|++++|. +..+|.. +.++++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 79 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 8888888888888 7777654 6778888888888888555556677888888888888887766666677778888888
Q ss_pred ceEEeecc
Q 011151 231 TKFVVGGG 238 (492)
Q Consensus 231 ~l~~~~~~ 238 (492)
++..+...
T Consensus 158 ~l~~n~l~ 165 (477)
T 2id5_A 158 TLEKCNLT 165 (477)
T ss_dssp EEESCCCS
T ss_pred ECCCCcCc
Confidence 77766443
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.7e-27 Score=232.98 Aligned_cols=305 Identities=17% Similarity=0.137 Sum_probs=207.8
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccc-h
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLP-E 171 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp-~ 171 (492)
.+++++.|++.++. +....+..|..+++|++|+++ ++.+..++. .+.++++|++|++++|. +..++ .
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECC-------CCcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 35666777776665 555344445666777777776 666666553 56667777777777776 44443 3
Q ss_pred hhhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccc
Q 011151 172 TLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
.+.++++|++|++++|. +..+|.. ++++++|++|++++|.+....+..+..+++|+.|++..+.... . .+..
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~----~~~~ 184 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V----DLSL 184 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB--C----CGGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc--c----cccc
Confidence 45667777777777776 4455544 3667777777777776655555556666777777666655442 1 1233
Q ss_pred ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 251 LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 251 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
++.|+.+.+....- ..+...++|+.|++++|.+.... ....++|+.|++++|.+..
T Consensus 185 l~~L~~L~l~~n~l---------~~~~~~~~L~~L~l~~n~l~~~~---------------~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 185 IPSLFHANVSYNLL---------STLAIPIAVEELDASHNSINVVR---------------GPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp CTTCSEEECCSSCC---------SEEECCSSCSEEECCSSCCCEEE---------------CCCCSSCCEEECCSSCCCC
T ss_pred ccccceeecccccc---------cccCCCCcceEEECCCCeeeecc---------------ccccccccEEECCCCCCcc
Confidence 34444444433211 12344568999999998864221 1235789999999999887
Q ss_pred cccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceecc
Q 011151 331 NVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409 (492)
Q Consensus 331 ~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (492)
..++..+++|+.|++++|.+.+..+. +..+++|++|++++|. ++.++..+ ..+|+|+.|+++
T Consensus 241 ----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L~~L~L~ 303 (390)
T 3o6n_A 241 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLS 303 (390)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTCCEEECC
T ss_pred ----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------------CCCCCCCEEECC
Confidence 46788999999999999987776554 8889999999999987 55544322 278999999999
Q ss_pred CcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 410 DMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 410 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
++. ++. +|..+..+++|+.|++++| .++.++ +..+++|++|++++|+.
T Consensus 304 ~n~-l~~------~~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 304 HNH-LLH------VERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SSC-CCC------CGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCc-cee------cCccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 984 543 3445668899999999995 566675 67789999999999985
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.3e-27 Score=243.30 Aligned_cols=353 Identities=15% Similarity=0.119 Sum_probs=227.9
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cch
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTN 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~ 148 (492)
..++++++++.+..+|..+. ++|+.|++++|. +.+..+..|..+++|++|+++ ++.+..+ |..
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~------~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 95 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP------PRTKALSLSQNS---ISELRMPDISFLSELRVLRLS-------HNRIRSLDFHV 95 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC------TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECC-------SCCCCEECTTT
T ss_pred CCcEEEcCCCCCccCCCCCC------CCcCEEECCCCC---ccccChhhhccCCCccEEECC-------CCCCCcCCHHH
Confidence 34789999999998887653 899999999998 778677889999999999999 8898887 567
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
+.++++|++|++++|. +..+|.. .+++|++|++++|.+.. ..|..++++++|++|++++|.+... .+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L 169 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL 169 (562)
T ss_dssp TTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS
T ss_pred hCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc
Confidence 9999999999999999 8899876 89999999999999433 3457899999999999999977543 34455555
Q ss_pred --cccceEEeec--ccCCCcCccccc-----------------------cccccCCceEecCCCCCChhhhhHhhhc---
Q 011151 228 --RRVTKFVVGG--GYDRARSLGSLK-----------------------KLNLLRECSIRGLGGVSDAGEARRAELE--- 277 (492)
Q Consensus 228 --~~L~l~~~~~--~~~~~~~~~~l~-----------------------~L~~L~~l~~~~~~~~~~~~~~~~~~l~--- 277 (492)
+.|++..+.. ....+..+..+. .++.|+.+++......-.........+.
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 9999988766 321122222211 2334444444331100000000001111
Q ss_pred ------------------------ccCCcceEecccccCCCCchhhHh----------------h---hhHHHHhhhc--
Q 011151 278 ------------------------KKKNLVELGLHFDRLRDGDEEQAR----------------R---RESERLLEAL-- 312 (492)
Q Consensus 278 ------------------------~~~~L~~L~l~~~~l~~~~~~~~~----------------~---~~~~~~~~~l-- 312 (492)
..++|+.|++++|.+++.-..... . .........+
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 123666666666654421100000 0 0000000000
Q ss_pred --------------------CCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcC--C-CCCCCCccce
Q 011151 313 --------------------GPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHL--P-PLGKLPSLES 369 (492)
Q Consensus 313 --------------------~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~--~-~l~~l~~L~~ 369 (492)
..+++|++|++++|.+.. ..|.++..+++|+.|++++|.+.+.. + .+..+++|++
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred cCcceEEEccCCCcccccCccCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 345666777776666655 22555666677777777776554321 1 2566677777
Q ss_pred eeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCC-CCcceEeecCCCCcccCC
Q 011151 370 LYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIM-PRLSFLEISGCCKLKALP 448 (492)
Q Consensus 370 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~ 448 (492)
|++++|.....++...+ ..+++|+.|+++++. ++ +..|. .+ ++|+.|++++| .++.+|
T Consensus 408 L~l~~N~l~~~~~~~~~-----------~~l~~L~~L~l~~n~-l~-----~~~~~---~l~~~L~~L~L~~N-~l~~ip 466 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTC-----------AWAESILVLNLSSNM-LT-----GSVFR---CLPPKVKVLDLHNN-RIMSIP 466 (562)
T ss_dssp EECTTSCCBSCCSSCCC-----------CCCTTCCEEECCSSC-CC-----GGGGS---SCCTTCSEEECCSS-CCCCCC
T ss_pred EECCCCcCCCccChhhh-----------cCcccCCEEECCCCC-CC-----cchhh---hhcCcCCEEECCCC-cCcccC
Confidence 77776662222333222 256788888887764 32 22222 33 69999999995 778899
Q ss_pred cccCCCCCCCeEEEeCCCc
Q 011151 449 DLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 449 ~~l~~l~~L~~L~l~~c~~ 467 (492)
..+..+++|++|++++|..
T Consensus 467 ~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQL 485 (562)
T ss_dssp TTTTSSCCCSEEECCSSCC
T ss_pred hhhcCCCCCCEEECCCCCC
Confidence 8888999999999999964
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=9.8e-27 Score=232.89 Aligned_cols=322 Identities=20% Similarity=0.247 Sum_probs=188.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++.+.+.++.+..++. +. .+++|++|++++|. +.. ++. +..+++|++|+++ ++.+..++.
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~----~l~~L~~L~Ls~n~---l~~-~~~-~~~l~~L~~L~l~-------~n~l~~~~~- 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VE----YLNNLTQINFSNNQ---LTD-ITP-LKNLTKLVDILMN-------NNQIADITP- 107 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCGG-
T ss_pred ccccEEecCCCCCccCcc-hh----hhcCCCEEECCCCc---cCC-chh-hhccccCCEEECC-------CCccccChh-
Confidence 466777777776665442 33 66777777777776 555 333 6677777777777 666666655
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccc--------------------cccCCCCCcEEec
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ--------------------GIGKLRKLMYLDN 208 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--------------------~~~~l~~L~~L~l 208 (492)
+.++++|++|++++|. +..++. +.++++|++|++++|. +..++. .+.++++|++|++
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEEC
Confidence 6677777777777776 665654 6667777777777766 444432 1344455555555
Q ss_pred CCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecc
Q 011151 209 DDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLH 288 (492)
Q Consensus 209 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 288 (492)
++|.+.. + ..+..+++|+.|++..+.... ...+..++.|+.+.+....-... ..+..+++|+.|+++
T Consensus 185 ~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 185 SSNKVSD-I-SVLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLA 251 (466)
T ss_dssp CSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred cCCcCCC-C-hhhccCCCCCEEEecCCcccc-----cccccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECC
Confidence 5554322 1 124445555555555443332 11133344444444443321111 234555666666666
Q ss_pred cccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccc
Q 011151 289 FDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLE 368 (492)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~ 368 (492)
+|.+++.. .+..+++|++|++++|.+.. + +. +..+++|+.|++++|.+.+ ++.+..+++|+
T Consensus 252 ~n~l~~~~--------------~~~~l~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~ 312 (466)
T 1o6v_A 252 NNQISNLA--------------PLSGLTKLTELKLGANQISN--I-SP-LAGLTALTNLELNENQLED-ISPISNLKNLT 312 (466)
T ss_dssp SSCCCCCG--------------GGTTCTTCSEEECCSSCCCC--C-GG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCS
T ss_pred CCccccch--------------hhhcCCCCCEEECCCCccCc--c-cc-ccCCCccCeEEcCCCcccC-chhhcCCCCCC
Confidence 66543221 14556667777777776665 4 22 5566777777777765443 33355667777
Q ss_pred eeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCC
Q 011151 369 SLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP 448 (492)
Q Consensus 369 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 448 (492)
.|++++|. +..+.. ...+++|+.|++++|. ++.. ..+..+++|+.|++++|. ++.++
T Consensus 313 ~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~n~-l~~~-------~~l~~l~~L~~L~l~~n~-l~~~~ 369 (466)
T 1o6v_A 313 YLTLYFNN-ISDISP-------------VSSLTKLQRLFFYNNK-VSDV-------SSLANLTNINWLSAGHNQ-ISDLT 369 (466)
T ss_dssp EEECCSSC-CSCCGG-------------GGGCTTCCEEECCSSC-CCCC-------GGGTTCTTCCEEECCSSC-CCBCG
T ss_pred EEECcCCc-CCCchh-------------hccCccCCEeECCCCc-cCCc-------hhhccCCCCCEEeCCCCc-cCccc
Confidence 77777765 222211 2267788888887764 4432 245678888888888864 44444
Q ss_pred cccCCCCCCCeEEEeCCCc
Q 011151 449 DLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 449 ~~l~~l~~L~~L~l~~c~~ 467 (492)
. +..+++|+.|++++|+.
T Consensus 370 ~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 370 P-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp G-GTTCTTCCEEECCCEEE
T ss_pred h-hhcCCCCCEEeccCCcc
Confidence 3 77788888888888864
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=245.80 Aligned_cols=133 Identities=21% Similarity=0.233 Sum_probs=106.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
+++++++++++.+..++.. ++.++++|++|++++|. +....|..|..+++|++|+++ ++.+..++.
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~l~~~ 118 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAV-------ETNLASLENF 118 (570)
T ss_dssp SSCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TSCCCCSTTC
T ss_pred CCceEEECCCCcCCccCcc---cccCchhCCEEeCcCCc---CCccCHhhhcCcccccccccc-------ccccccCCCc
Confidence 6899999999988775432 23489999999999998 777667889999999999999 888888875
Q ss_pred hhhccCcCCEEEccCCCCcc--ccchhhhcCCCCCeeecCcccccccccccccCCCCC----cEEecCCCcccc
Q 011151 148 NIEKLLHLKYLSLCGQREIE--KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKL----MYLDNDDTWFLR 215 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L----~~L~l~~~~~~~ 215 (492)
.+.++++|++|++++|. +. .+|..++++++|++|++++|.+....|..++.+++| +.|++++|.+..
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp SCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred cccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 58899999999999998 55 478889999999999999998444445556666666 677777765543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.3e-27 Score=237.13 Aligned_cols=334 Identities=14% Similarity=0.129 Sum_probs=242.9
Q ss_pred ccceEEEEEEeecCCC-c-ccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-
Q 011151 68 EKKILHLLLTLHRGAS-V-PISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK- 144 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~- 144 (492)
.++++.++++++.+.. + +..+ .++++|++|++++|. +.+..|..|+.+++|++|+++ ++.+..
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~----~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~ 118 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTF----RGLSSLIILKLDYNQ---FLQLETGAFNGLANLEVLTLT-------QCNLDGA 118 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTT----TTCTTCCEEECTTCT---TCEECTTTTTTCTTCCEEECT-------TSCCBTH
T ss_pred CccccEEECcCCcccceECcccc----cccccCCEEeCCCCc---cCccChhhccCcccCCEEeCC-------CCCCCcc
Confidence 4789999999998753 3 2334 489999999999998 777678889999999999999 888765
Q ss_pred cCch--hhccCcCCEEEccCCCCcccc-chh-hhcCCCCCeeecCcccccccccccccCC--CCCcEEecCCCccccccc
Q 011151 145 IPTN--IEKLLHLKYLSLCGQREIEKL-PET-LCELYNLERLNITSCNHLRELPQGIGKL--RKLMYLDNDDTWFLRYLP 218 (492)
Q Consensus 145 l~~~--~~~l~~L~~L~L~~~~~~~~l-p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~~~ 218 (492)
.+.. +.++++|++|++++|. +..+ |.. +.++++|++|++++|.+....|..+..+ .+|+.|++++|.+....+
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred ccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccch
Confidence 3443 8899999999999999 5554 655 8899999999999999666667667665 789999999997754333
Q ss_pred cc--------ccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCCh------hhhhHhhhc--ccCCc
Q 011151 219 VG--------IGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDA------GEARRAELE--KKKNL 282 (492)
Q Consensus 219 ~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~------~~~~~~~l~--~~~~L 282 (492)
.. +..+++|+.|+++.+......+..+........++.+.+......... .......+. ..++|
T Consensus 198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence 22 335678999999887654311222222222244444444433111100 000001122 34689
Q ss_pred ceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-C
Q 011151 283 VELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-L 361 (492)
Q Consensus 283 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l 361 (492)
+.+++++|.+. ...+..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+.+..+. +
T Consensus 278 ~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 278 KTCDLSKSKIF------------ALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CEEECCSSCCC------------EECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred eEEEecCcccc------------ccchhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 99999999854 2345567888999999999999887 6577889999999999999988666555 7
Q ss_pred CCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCC
Q 011151 362 GKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGC 441 (492)
Q Consensus 362 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 441 (492)
..+++|++|++++|. +..+....+ ..+++|++|+++++. ++.+. +..+..+++|+.|++++|
T Consensus 344 ~~l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 344 ENLDKLEVLDLSYNH-IRALGDQSF-----------LGLPNLKELALDTNQ-LKSVP-----DGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTT-----------TTCTTCCEEECCSSC-CSCCC-----TTTTTTCTTCCEEECCSS
T ss_pred cCcccCCEEECCCCc-ccccChhhc-----------cccccccEEECCCCc-cccCC-----HhHhccCCcccEEEccCC
Confidence 889999999999998 444433222 278999999999974 54432 234578999999999998
Q ss_pred CCcccCC
Q 011151 442 CKLKALP 448 (492)
Q Consensus 442 ~~l~~l~ 448 (492)
+...+.|
T Consensus 406 ~l~~~~~ 412 (455)
T 3v47_A 406 PWDCSCP 412 (455)
T ss_dssp CBCCCTT
T ss_pred CcccCCC
Confidence 7666655
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.7e-26 Score=222.19 Aligned_cols=280 Identities=19% Similarity=0.260 Sum_probs=208.7
Q ss_pred ccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 68 EKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
.+++++++++++.+..++. +. ++++|++|++++|. +.. ++ .+..+++|++|+++ ++.+..++.
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~----~l~~L~~L~L~~n~---i~~-~~-~~~~l~~L~~L~l~-------~n~i~~~~~ 127 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LS----NLVKLTNLYIGTNK---ITD-IS-ALQNLTNLRELYLN-------EDNISDISP 127 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GT----TCTTCCEEECCSSC---CCC-CG-GGTTCTTCSEEECT-------TSCCCCCGG
T ss_pred cCCccEEEccCCccccchh-hh----cCCcCCEEEccCCc---ccC-ch-HHcCCCcCCEEECc-------CCcccCchh
Confidence 3789999999999988665 44 89999999999998 555 44 38999999999999 888988876
Q ss_pred hhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
+..+++|++|++++|.....++ .+..+++|++|++++|. +..++. +..+++|++|++++|.+.. ++. +..+++|
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L 201 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSL 201 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTC
T ss_pred -hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcccc-ccc-ccCCCcc
Confidence 8899999999999997566655 48999999999999998 555554 8899999999999997643 333 6667777
Q ss_pred cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
+.|++..+.... . ..+..+++|+.|++++|.+++..
T Consensus 202 ~~L~l~~n~l~~-----~----------------------------~~~~~~~~L~~L~l~~n~l~~~~----------- 237 (347)
T 4fmz_A 202 HYFTAYVNQITD-----I----------------------------TPVANMTRLNSLKIGNNKITDLS----------- 237 (347)
T ss_dssp CEEECCSSCCCC-----C----------------------------GGGGGCTTCCEEECCSSCCCCCG-----------
T ss_pred ceeecccCCCCC-----C----------------------------chhhcCCcCCEEEccCCccCCCc-----------
Confidence 777665543221 0 11445667788888887764321
Q ss_pred HhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccC
Q 011151 308 LLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLG 387 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 387 (492)
.+..+++|++|++++|.+.. + ..+..+++|+.|++++|.+.+ ++.+..+++|++|++++|. +.......
T Consensus 238 ---~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-- 306 (347)
T 4fmz_A 238 ---PLANLSQLTWLEIGTNQISD--I--NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQ-LGNEDMEV-- 306 (347)
T ss_dssp ---GGTTCTTCCEEECCSSCCCC--C--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCGGGHHH--
T ss_pred ---chhcCCCCCEEECCCCccCC--C--hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCc-CCCcChhH--
Confidence 16677888888888887776 4 457788888888888885544 4557778888888888886 33222221
Q ss_pred CcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCC
Q 011151 388 VESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCC 442 (492)
Q Consensus 388 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 442 (492)
+..+++|+.|++++|+ ++... | +..+++|++|++++|+
T Consensus 307 ---------l~~l~~L~~L~L~~n~-l~~~~-----~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 ---------IGGLTNLTTLFLSQNH-ITDIR-----P--LASLSKMDSADFANQV 344 (347)
T ss_dssp ---------HHTCTTCSEEECCSSS-CCCCG-----G--GGGCTTCSEESSSCC-
T ss_pred ---------hhccccCCEEEccCCc-ccccc-----C--hhhhhccceeehhhhc
Confidence 2267888888888875 43322 1 5578899999998864
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.3e-27 Score=240.44 Aligned_cols=306 Identities=17% Similarity=0.133 Sum_probs=212.7
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE- 171 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~- 171 (492)
.+++++.+++.++. +....+..|..+++|++|+++ ++.+..++. .+.++++|++|++++|. +..+|+
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECC-------CCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 35667777777766 555445556677777777777 666666653 56777777777777777 554443
Q ss_pred hhhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccc
Q 011151 172 TLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
.++++++|++|++++|. +..+|.. ++.+++|++|++++|.+....|..+..+++|+.|+++.+.... . .+..
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~~ 190 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSL 190 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGGG
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---c---Chhh
Confidence 35677777777777776 4455544 4677777777777776665556667777777777776665443 1 1233
Q ss_pred ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 251 LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 251 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
++.|+.+.+....- ..+...++|+.|++++|.+.... . ...++|+.|++++|.+..
T Consensus 191 l~~L~~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~~~~-------------~--~~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 191 IPSLFHANVSYNLL---------STLAIPIAVEELDASHNSINVVR-------------G--PVNVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTCSEEECCSSCC---------SEEECCTTCSEEECCSSCCCEEE-------------C--SCCSCCCEEECCSSCCCC
T ss_pred hhhhhhhhcccCcc---------ccccCCchhheeeccCCcccccc-------------c--ccCCCCCEEECCCCCCCC
Confidence 34444444433211 12345568899999998864221 1 123689999999999887
Q ss_pred cccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceecc
Q 011151 331 NVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409 (492)
Q Consensus 331 ~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (492)
+.++..+++|+.|++++|.+.+..|. ++.+++|+.|+|++|. +..++..+ ..+|+|+.|+++
T Consensus 247 ----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------~~l~~L~~L~Ls 309 (597)
T 3oja_B 247 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLS 309 (597)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------------SCCTTCCEEECC
T ss_pred ----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------------ccCCCCcEEECC
Confidence 57788999999999999988777665 8889999999999987 44444322 268999999999
Q ss_pred CcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCch
Q 011151 410 DMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPIL 468 (492)
Q Consensus 410 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 468 (492)
+|. +.. +|..+..+++|+.|++++|. ++.+| +..+++|+.|++++|+.-
T Consensus 310 ~N~-l~~------i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 310 HNH-LLH------VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SSC-CCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCC-CCc------cCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCC
Confidence 875 432 45566789999999999964 56665 667899999999999853
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-26 Score=225.84 Aligned_cols=306 Identities=15% Similarity=0.085 Sum_probs=240.0
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
.+++++++.++.+..+|..++ .++++|++|++++|. +....+..|..+++|++|+++ ++.+..++.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~---~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 111 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-------FNAIRYLPPH 111 (390)
T ss_dssp CCCSEEEEESCEESEECTHHH---HHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEecCCchhhCChhHh---cccccCcEEECCCCc---ccccChhhccCCCCcCEEECC-------CCCCCcCCHH
Confidence 689999999999988776643 378999999999998 777666789999999999999 888888764
Q ss_pred hhhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.+.++++|++|++++|. +..+|.. +.++++|++|++++|.+....|..+..+++|++|++++|.+... .+..+++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc
Confidence 58999999999999999 8888876 58899999999999995545566689999999999999977543 3567888
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+.... +.....|+.+.+....-.. ......++|+.|++++|.+++.
T Consensus 188 L~~L~l~~n~l~~--------~~~~~~L~~L~l~~n~l~~-------~~~~~~~~L~~L~l~~n~l~~~----------- 241 (390)
T 3o6n_A 188 LFHANVSYNLLST--------LAIPIAVEELDASHNSINV-------VRGPVNVELTILKLQHNNLTDT----------- 241 (390)
T ss_dssp CSEEECCSSCCSE--------EECCSSCSEEECCSSCCCE-------EECCCCSSCCEEECCSSCCCCC-----------
T ss_pred cceeecccccccc--------cCCCCcceEEECCCCeeee-------ccccccccccEEECCCCCCccc-----------
Confidence 9998887664432 2333445555554432211 0112347899999999997532
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeeccccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFL 386 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 386 (492)
..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+.........+++|++|++++|. +..++..+
T Consensus 242 ---~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 314 (390)
T 3o6n_A 242 ---AWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ- 314 (390)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH-
T ss_pred ---HHHcCCCCccEEECCCCcCCC--cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccc-
Confidence 346778999999999999887 54788899999999999999776654446789999999999997 55554332
Q ss_pred CCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCc
Q 011151 387 GVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444 (492)
Q Consensus 387 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 444 (492)
..+++|+.|+++++. ++.+. +..+++|+.|++++|+.-
T Consensus 315 -----------~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 315 -----------PQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp -----------HHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred -----------cccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCCcc
Confidence 278999999999986 54432 447899999999997543
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=4.6e-26 Score=244.09 Aligned_cols=349 Identities=14% Similarity=0.104 Sum_probs=250.6
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccc-ccccc-Cchh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKN-FIKKI-PTNI 149 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l-~~~~ 149 (492)
+.++.+++++..+|. + .+++++|++++|. +....|..|..+++|++|+++ ++ ....+ |..+
T Consensus 7 ~~~dcs~~~L~~vP~-l------p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs-------~n~~~~~i~~~~f 69 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V------LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELG-------SQYTPLTIDKEAF 69 (844)
T ss_dssp EEEEESCCCSSCCCS-S------CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEEC-------TTCCCCEECTTTT
T ss_pred eEEEccCCCCCCCCC-C------CCCcCEEECCCCc---CCccChhHCcccccCeEEeCC-------CCCCccccCHHHh
Confidence 466677778888776 4 3789999999998 778778889999999999999 55 56666 6779
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccc--ccCCCCCcEEecCCCccccccc-cccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG--IGKLRKLMYLDNDDTWFLRYLP-VGIGELIN 226 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~ 226 (492)
.++++|++|+|++|.+....|..+.++++|++|++++|......|.. ++++++|++|++++|.+....+ ..+.++++
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 99999999999999944445888999999999999999966556655 8899999999999998866544 56899999
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccC------CcceEecccccCCCCchhhH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKK------NLVELGLHFDRLRDGDEEQA 300 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~l~~~~~~~~ 300 (492)
|+.|+++.+......+..+..+.. +.|+.+.+....-..... ..+..++ .|+.|++++|.+++......
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~-~~L~~L~L~~n~l~~~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQG-KTLSFFSLAANSLYSRVS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHH-CSSCCCEECCSBSCCCCC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred CCEEECCCCcCCeeCHHHcccccC-CccceEECCCCccccccc----cchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 999999988765422333333321 567776665432211100 1122333 49999999987643221111
Q ss_pred hhh------------------------hHHHHhhhcCC--CCCccEEEEeecCCCccccCchhhhccccccEEEEecccC
Q 011151 301 RRR------------------------ESERLLEALGP--PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 301 ~~~------------------------~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~ 354 (492)
... ........+.. .++|+.|++++|.+.. +++..+..+++|+.|++++|.+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCC
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcC
Confidence 000 00000111222 3689999999998877 5577888999999999999988
Q ss_pred CCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCc
Q 011151 355 CEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRL 433 (492)
Q Consensus 355 ~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 433 (492)
....+. +..+++|++|++++|. +..+.... ...+++|+.|+++++. +..+ .+..+..+++|
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-i~~~-----~~~~~~~l~~L 364 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNL-LGELYSSN-----------FYGLPKVAYIDLQKNH-IAII-----QDQTFKFLEKL 364 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCC-CSCCCSCS-----------CSSCTTCCEEECCSCC-CCCC-----CSSCSCSCCCC
T ss_pred CCCChHHhcCCCCCCEEECCCCC-CCccCHHH-----------hcCCCCCCEEECCCCC-CCcc-----ChhhhcCCCCC
Confidence 776665 8889999999999987 33332222 2378899999998874 4332 23456789999
Q ss_pred ceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 434 SFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 434 ~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+.|++++| .++.++. +++|+.|++++|..
T Consensus 365 ~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 365 QTLDLRDN-ALTTIHF----IPSIPDIFLSGNKL 393 (844)
T ss_dssp CEEEEETC-CSCCCSS----CCSCSEEEEESCCC
T ss_pred CEEECCCC-CCCcccC----CCCcchhccCCCCc
Confidence 99999995 5555543 77888888888753
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=3.5e-26 Score=229.81 Aligned_cols=297 Identities=19% Similarity=0.133 Sum_probs=199.8
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
..++.|+++++.+..++ ..+ .++++|+.|++++|. +....|..|..+++|++|+|+ ++.+..+|.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF----ASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLR-------SNRLKLIPL 97 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT----TTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCSCCT
T ss_pred CCCcEEECCCCccceECHhHc----cCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECC-------CCcCCccCc
Confidence 68999999999998754 344 489999999999998 788778889999999999999 899999886
Q ss_pred h-hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
. +.++++|++|++++|.+....|..+.++++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 5 789999999999999944445667899999999999999955555678999999999999999886555556889999
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+..... ....+..++.|+.+.+.......... .......+|+.|++++|.++...
T Consensus 178 L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~---------- 240 (477)
T 2id5_A 178 LIVLRLRHLNINAI---RDYSFKRLYRLKVLEISHWPYLDTMT----PNCLYGLNLTSLSITHCNLTAVP---------- 240 (477)
T ss_dssp CCEEEEESCCCCEE---CTTCSCSCTTCCEEEEECCTTCCEEC----TTTTTTCCCSEEEEESSCCCSCC----------
T ss_pred CcEEeCCCCcCcEe---ChhhcccCcccceeeCCCCccccccC----cccccCccccEEECcCCcccccC----------
Confidence 99999988765431 11233444455555555433221110 11112235666666666543221
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEF 385 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~ 385 (492)
...+..+++|+.|++++|.+.. +++..+..+++|+.|++++|.+....+. +..+++|+.|++++|. ++.++...
T Consensus 241 --~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 315 (477)
T 2id5_A 241 --YLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESV 315 (477)
T ss_dssp --HHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGG
T ss_pred --HHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhH
Confidence 1234455566666666665554 4344455566666666666655444333 5555666666666554 33333322
Q ss_pred cCCcCCCCCCcccccccccceeccCcc
Q 011151 386 LGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 386 ~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
+. .+++|+.|++.+++
T Consensus 316 ~~-----------~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 316 FH-----------SVGNLETLILDSNP 331 (477)
T ss_dssp BS-----------CGGGCCEEECCSSC
T ss_pred cC-----------CCcccCEEEccCCC
Confidence 22 45556666655544
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=7.1e-26 Score=237.80 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=70.5
Q ss_pred cceEEEEEEeecCCCcccc-cccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-C
Q 011151 69 KKILHLLLTLHRGASVPIS-IWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~ 146 (492)
++++.++++++.+..++.. +. ++++|+.|++++|. +.+..|..|+.+++|++|+++ ++.+... |
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~----~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 138 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFA----FCTNLTELHLMSNS---IQKIKNNPFVKQKNLITLDLS-------HNGLSSTKL 138 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT----TCTTCSEEECCSSC---CCCCCSCTTTTCTTCCEEECC-------SSCCSCCCC
T ss_pred cCcCEEECCCCccCccChhhhc----cCCCCCEEECCCCc---cCccChhHccccCCCCEEECC-------CCcccccCc
Confidence 5778888888877766543 33 77888888888877 566555667778888888887 6666554 3
Q ss_pred chhhccCcCCEEEccCCCCccccch-hhh--cCCCCCeeecCccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPE-TLC--ELYNLERLNITSCN 188 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~-~~~--~l~~L~~L~l~~~~ 188 (492)
..+.++++|++|++++|. +..++. .+. .+++|++|++++|.
T Consensus 139 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 139 GTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred hhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence 456677777777777777 444433 222 34666666666665
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.9e-25 Score=223.56 Aligned_cols=312 Identities=21% Similarity=0.244 Sum_probs=199.4
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.+++++.|.+.++. +.. +|. +..+++|++|+++ ++.+..++. +.++++|++|++++|. +..++. +
T Consensus 44 ~l~~l~~L~l~~~~---i~~-l~~-~~~l~~L~~L~Ls-------~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLG---IKS-IDG-VEYLNNLTQINFS-------NNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-L 108 (466)
T ss_dssp HHHTCCEEECCSSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhccccEEecCCCC---Ccc-Ccc-hhhhcCCCEEECC-------CCccCCchh-hhccccCCEEECCCCc-cccChh-h
Confidence 56889999999998 555 554 7889999999999 889988877 8999999999999999 777776 9
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
.++++|++|++++|. +..++. +..+++|++|++++|.+.. ++ .+..+++|+.|.+... .. ....+..++.
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~-~~-----~~~~~~~l~~ 178 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ-VT-----DLKPLANLTT 178 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES-CC-----CCGGGTTCTT
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc-cc-----CchhhccCCC
Confidence 999999999999998 666665 8999999999999997644 33 4778888888887532 21 2233566666
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
|+.+++....-... ..+..+++|+.|++++|.+.+... +..+++|+.|++++|.+.. +
T Consensus 179 L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~~--~ 236 (466)
T 1o6v_A 179 LERLDISSNKVSDI------SVLAKLTNLESLIATNNQISDITP--------------LGILTNLDELSLNGNQLKD--I 236 (466)
T ss_dssp CCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG--------------GGGCTTCCEEECCSSCCCC--C
T ss_pred CCEEECcCCcCCCC------hhhccCCCCCEEEecCCccccccc--------------ccccCCCCEEECCCCCccc--c
Confidence 77666655432211 235666777777777776543211 2334555555555555544 2
Q ss_pred CchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCc----------CCCCCCcccccccc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVE----------SDTDGSSIIAFPKL 403 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~----------~~~~~~~~~~l~~L 403 (492)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|. +..++. +.... ..........+++|
T Consensus 237 --~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 311 (466)
T 1o6v_A 237 --GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNL 311 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTC
T ss_pred --hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCC
Confidence 234455555555555554333222 4444555555555443 211111 00000 00000012256666
Q ss_pred cceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 404 KHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 404 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+.|++++|. +... .| +..+++|+.|++++| .++.++ .+..+++|+.|++++|..
T Consensus 312 ~~L~L~~n~-l~~~-----~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 312 TYLTLYFNN-ISDI-----SP--VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SEEECCSSC-CSCC-----GG--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred CEEECcCCc-CCCc-----hh--hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 666666653 3222 11 446778888888775 455553 566788888888888764
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.8e-25 Score=222.02 Aligned_cols=206 Identities=17% Similarity=0.135 Sum_probs=131.1
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.++++++.+..+| .+. .+++|+.|++++|. +.+ +| ++.+++|++|+++ ++.+..++
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~----~l~~L~~L~Ls~n~---l~~-~~--~~~l~~L~~L~Ls-------~N~l~~~~-- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIE----KLTGLTKLICTSNN---ITT-LD--LSQNTNLTYLACD-------SNKLTNLD-- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGG----GCTTCSEEECCSSC---CSC-CC--CTTCTTCSEEECC-------SSCCSCCC--
T ss_pred CCCCEEEccCCCcccCh-hhc----ccCCCCEEEccCCc---CCe-Ec--cccCCCCCEEECc-------CCCCceee--
Confidence 57778888877777654 343 77788888888877 555 33 6777778888887 77777764
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++.+++|++|++++|...+.+ .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 6777788888888887 66665 6777888888888877 44443 677778888888877544444 356677777
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|+++.+.... . . +..++.|+.+.+....-.. ..+..+++|+.|++++|.+++.
T Consensus 174 ~L~ls~n~l~~--l---~-l~~l~~L~~L~l~~N~l~~-------~~l~~l~~L~~L~Ls~N~l~~i------------- 227 (457)
T 3bz5_A 174 TLDCSFNKITE--L---D-VSQNKLLNRLNCDTNNITK-------LDLNQNIQLTFLDCSSNKLTEI------------- 227 (457)
T ss_dssp EEECCSSCCCC--C---C-CTTCTTCCEEECCSSCCSC-------CCCTTCTTCSEEECCSSCCSCC-------------
T ss_pred EEECCCCccce--e---c-cccCCCCCEEECcCCcCCe-------eccccCCCCCEEECcCCccccc-------------
Confidence 77777665443 1 1 3344444444443322111 0245556666666666664321
Q ss_pred hhhcCCCCCccEEEEeecCCCc
Q 011151 309 LEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
+ +..+++|++|++++|.+..
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSC
T ss_pred C--ccccCCCCEEEeeCCcCCC
Confidence 1 4455666666666666555
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=9.7e-27 Score=238.26 Aligned_cols=344 Identities=15% Similarity=0.121 Sum_probs=230.7
Q ss_pred EEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhcc
Q 011151 74 LLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKL 152 (492)
Q Consensus 74 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l 152 (492)
.+.+++.+..+|..+. +.|++|++++|. +.+..|..|..+++|++|+++ ++.+..++ ..+.++
T Consensus 10 c~~~~~~l~~ip~~~~------~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~~~l 73 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT------AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILK-------SSRINTIEGDAFYSL 73 (549)
T ss_dssp EECTTSCCSSCCSCCC------TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECT-------TSCCCEECTTTTTTC
T ss_pred EECCCCccccccccCC------CCccEEECcCCc---cCccChhhhhcCCcccEEECC-------CCCcCccChhhcccc
Confidence 4555667777777553 789999999998 777677889999999999999 88888876 569999
Q ss_pred CcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCccccccc-ccccccccccc
Q 011151 153 LHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRR 229 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 229 (492)
++|++|++++|. +..++. .++++++|++|++++|.+.. ..|..++++++|++|++++|...+.+| ..+..+++|++
T Consensus 74 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 74 GSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred ccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 999999999999 666655 49999999999999999443 456789999999999999998556665 57899999999
Q ss_pred cceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhh----------
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQ---------- 299 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~---------- 299 (492)
|++..+......+ ..+..++.|+.+.+..... .... ...+..+++|+.|++++|.+++.....
T Consensus 153 L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 153 LEIKALSLRNYQS---QSLKSIRDIHHLTLHLSES-AFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp EEEEETTCCEECT---TTTTTCSEEEEEEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred eeccCCcccccCh---hhhhccccCceEecccCcc-cccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 9999887664223 3344455555555544321 1111 112345677777777777665431000
Q ss_pred ---------HhhhhHHHHhhhcCC--------------------------------------------------------
Q 011151 300 ---------ARRRESERLLEALGP-------------------------------------------------------- 314 (492)
Q Consensus 300 ---------~~~~~~~~~~~~l~~-------------------------------------------------------- 314 (492)
........+...+..
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 000001111111111
Q ss_pred ---CCCccEEEEeecCCCccccCchhh-hccccccEEEEecccCCCcCC----CCCCCCccceeeccccccceeecc--c
Q 011151 315 ---PPNLKELVIDEYRGRRNVVPRNWV-MSLTNLRALLLKNCRNCEHLP----PLGKLPSLESLYIEGMQSVKRVGN--E 384 (492)
Q Consensus 315 ---~~~L~~L~l~~~~~~~~~l~~~~~-~~l~~L~~L~L~~~~~~~~~~----~l~~l~~L~~L~l~~~~~l~~~~~--~ 384 (492)
.++|++|++++|.+.. + |..+ ..+++|+.|++++|.+.+..+ .++.+++|++|++++|. ++.++. .
T Consensus 306 ~~~~~~L~~L~l~~n~l~~--i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 381 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVFL--V-PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGE 381 (549)
T ss_dssp HHHSTTCCEEEEESSCCCC--C-CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHH
T ss_pred hhhcccceEEEeccCcccc--C-CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchh
Confidence 1345666666666554 5 4433 467778888887777665432 25667778888887776 333321 1
Q ss_pred ccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeC
Q 011151 385 FLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGR 464 (492)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~ 464 (492)
. +..+++|++|++++|. ++. +|..+..+++|+.|++++| .++.+|..+ .++|++|++++
T Consensus 382 ~-----------~~~l~~L~~L~Ls~N~-l~~------lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~--~~~L~~L~Ls~ 440 (549)
T 2z81_A 382 I-----------LLTLKNLTSLDISRNT-FHP------MPDSCQWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSN 440 (549)
T ss_dssp H-----------GGGCTTCCEEECTTCC-CCC------CCSCCCCCTTCCEEECTTS-CCSCCCTTS--CTTCSEEECCS
T ss_pred h-----------hhcCCCCCEEECCCCC-Ccc------CChhhcccccccEEECCCC-Ccccccchh--cCCceEEECCC
Confidence 1 2267788888887763 432 4555667788888888885 466666544 36788888888
Q ss_pred CC
Q 011151 465 CP 466 (492)
Q Consensus 465 c~ 466 (492)
|.
T Consensus 441 N~ 442 (549)
T 2z81_A 441 NN 442 (549)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1e-25 Score=232.27 Aligned_cols=306 Identities=15% Similarity=0.085 Sum_probs=240.2
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
.+++.+++.++.+..+|..++ .++++|+.|++++|. +.+..|..|..+++|++|+|+ ++.+..+|.
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~---~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-------FNAIRYLPPH 117 (597)
T ss_dssp CCCSEEEESSCEESEECTHHH---HHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEeeCCCCCCcCHHHH---ccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECC-------CCcCCCCCHH
Confidence 578899999999888776654 378999999999998 778677789999999999999 888888775
Q ss_pred hhhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.+.++++|++|++++|. +..+|.. ++++++|++|++++|.+....|..++.+++|++|++++|.+... .+..+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhh
Confidence 47999999999999999 7888876 58999999999999995555666799999999999999977543 3566788
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+.... +.....|+.+.+....-.. . .....++|+.|++++|.+++.
T Consensus 194 L~~L~l~~n~l~~--------l~~~~~L~~L~ls~n~l~~-~------~~~~~~~L~~L~L~~n~l~~~----------- 247 (597)
T 3oja_B 194 LFHANVSYNLLST--------LAIPIAVEELDASHNSINV-V------RGPVNVELTILKLQHNNLTDT----------- 247 (597)
T ss_dssp CSEEECCSSCCSE--------EECCTTCSEEECCSSCCCE-E------ECSCCSCCCEEECCSSCCCCC-----------
T ss_pred hhhhhcccCcccc--------ccCCchhheeeccCCcccc-c------ccccCCCCCEEECCCCCCCCC-----------
Confidence 9998887664432 2333445555554432211 0 011236899999999997532
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeeccccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFL 386 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 386 (492)
..+..+++|+.|++++|.+.. ++|..+..+++|+.|+|++|.+.........+++|+.|+|++|. +..++..+
T Consensus 248 ---~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~- 320 (597)
T 3oja_B 248 ---AWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ- 320 (597)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH-
T ss_pred ---hhhccCCCCCEEECCCCccCC--CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCccc-
Confidence 456778999999999999887 54788999999999999999877654447779999999999997 44454332
Q ss_pred CCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCc
Q 011151 387 GVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444 (492)
Q Consensus 387 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 444 (492)
..+++|+.|++++|. +..+. +..+++|+.|++++|+.-
T Consensus 321 -----------~~l~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 321 -----------PQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp -----------HHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred -----------ccCCCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCCCC
Confidence 278999999999986 44432 447899999999997653
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.3e-25 Score=234.01 Aligned_cols=362 Identities=16% Similarity=0.100 Sum_probs=234.6
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
..+++|++++|.+..++. ++. ++++|++|++++|. ++...+++|.++++|++|+|+ +|.+..+|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~----~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls-------~N~l~~l~~ 117 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLAL 117 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECG
T ss_pred cCCCEEEeeCCCCCCCCHHHHh----CCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEcc-------CCcCCCCCH
Confidence 689999999999988664 444 89999999999998 888677889999999999999 899999885
Q ss_pred -hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCccccccccccccc
Q 011151 148 -NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224 (492)
Q Consensus 148 -~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 224 (492)
.|.++++|++|++++|. +..+|. .++++++|++|++++|.+.. ..|..++.+++|++|++++|.+....+..+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 48999999999999999 777765 48999999999999998443 467788999999999999997754444333222
Q ss_pred ccccc---------------------------cceEEeec-------------------------cc-------------
Q 011151 225 INLRR---------------------------VTKFVVGG-------------------------GY------------- 239 (492)
Q Consensus 225 ~~L~~---------------------------L~l~~~~~-------------------------~~------------- 239 (492)
.+++. +.+..+.. ..
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 11110 00000000 00
Q ss_pred --------------------CCCc----------------------Ccc-------------------------------
Q 011151 240 --------------------DRAR----------------------SLG------------------------------- 246 (492)
Q Consensus 240 --------------------~~~~----------------------~~~------------------------------- 246 (492)
.... .+.
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence 0000 000
Q ss_pred ---------ccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchh----------hHh--hhhH
Q 011151 247 ---------SLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEE----------QAR--RRES 305 (492)
Q Consensus 247 ---------~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~----------~~~--~~~~ 305 (492)
....++.|+.+.+..... . ...........+.+|+.+++..+........ ... ....
T Consensus 357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l-~-~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 357 TSNKGGNAFSEVDLPSLEFLDLSRNGL-S-FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp ESCCSCCBCCCCBCTTCCEEECCSSCC-B-EEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES
T ss_pred ccccCCCCcccccccccccchhhcccc-c-cccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc
Confidence 000111122221111100 0 0000011222334444444443321100000 000 0000
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc-CCC-CCCCCccceeeccccccceeecc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH-LPP-LGKLPSLESLYIEGMQSVKRVGN 383 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~-~~~-l~~l~~L~~L~l~~~~~l~~~~~ 383 (492)
......+..+++++.++++.|.... .++..+..+++|+.|++++|..... .|. +..+++|++|+|++|. ++.++.
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~ 511 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP 511 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT
T ss_pred ccccccccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh
Confidence 1112234566788888888888766 5466777889999999998875543 343 7889999999999997 555544
Q ss_pred cccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCC-CCCCeEEE
Q 011151 384 EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQK-TTLQKLLI 462 (492)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l-~~L~~L~l 462 (492)
..++ .+++|+.|+++++. ++.+ .|..+..+++|+.|++++|...+..|..+.++ ++|+.|++
T Consensus 512 ~~f~-----------~l~~L~~L~Ls~N~-l~~l-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 512 TAFN-----------SLSSLQVLNMSHNN-FFSL-----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TTTT-----------TCTTCCEEECTTSC-CCBC-----CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred HHHc-----------CCCCCCEEECCCCc-CCCC-----ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 3332 78899999999864 4433 34567789999999999965444456677777 68999999
Q ss_pred eCCCc
Q 011151 463 GRCPI 467 (492)
Q Consensus 463 ~~c~~ 467 (492)
++||.
T Consensus 575 ~~Np~ 579 (635)
T 4g8a_A 575 TQNDF 579 (635)
T ss_dssp TTCCB
T ss_pred eCCCC
Confidence 99885
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3e-25 Score=220.47 Aligned_cols=300 Identities=19% Similarity=0.171 Sum_probs=230.2
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.+ +| .+..+++|++|+++ ++.+..+| +..+++|++|++++|. +..++ +
T Consensus 40 ~l~~L~~L~Ls~n~---l~~-~~-~l~~l~~L~~L~Ls-------~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSS---ITD-MT-GIEKLTGLTKLICT-------SNNITTLD--LSQNTNLTYLACDSNK-LTNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSC---CCC-CT-TGGGCTTCSEEECC-------SSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--C
T ss_pred HcCCCCEEEccCCC---ccc-Ch-hhcccCCCCEEEcc-------CCcCCeEc--cccCCCCCEEECcCCC-Cceee--c
Confidence 78999999999998 666 46 48999999999999 88898886 8899999999999999 77775 8
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
+++++|++|++++|. +..+| ++.+++|++|++++|.+.. + .+..+++|+.|++..+..... + .+..++.
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~----~-~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITK----L-DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCC----C-CCTTCTT
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccc----c-ccccCCc
Confidence 899999999999998 55665 8899999999999998755 3 378899999999988754431 1 3555667
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
|+.+.+....-.. ..+..+++|+.|++++|.+++. .+..+++|++|++++|.+.. +
T Consensus 172 L~~L~ls~n~l~~-------l~l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L~~L~Ls~N~l~~--i 227 (457)
T 3bz5_A 172 LTTLDCSFNKITE-------LDVSQNKLLNRLNCDTNNITKL---------------DLNQNIQLTFLDCSSNKLTE--I 227 (457)
T ss_dssp CCEEECCSSCCCC-------CCCTTCTTCCEEECCSSCCSCC---------------CCTTCTTCSEEECCSSCCSC--C
T ss_pred CCEEECCCCccce-------eccccCCCCCEEECcCCcCCee---------------ccccCCCCCEEECcCCcccc--c
Confidence 7776665543211 1267889999999999997532 36778999999999999988 7
Q ss_pred CchhhhccccccEEEEecccCCCcCCCCCCCCcc----------ceeeccccccceeecccccCCcCCCCCCcccccccc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSL----------ESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKL 403 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L----------~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L 403 (492)
| +..+++|+.|++++|.+.+.. .+.+++| +.|++++|..+..++ ...+++|
T Consensus 228 -p--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------------~~~l~~L 288 (457)
T 3bz5_A 228 -D--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------------AEGCRKI 288 (457)
T ss_dssp -C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------------CTTCTTC
T ss_pred -C--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------------ccccccC
Confidence 5 778999999999999876643 3334444 455555555443333 2278999
Q ss_pred cceeccCcccccccccCcc-c-cccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 404 KHLKFYDMEELEEWDFGTA-I-KGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 404 ~~L~l~~~~~l~~~~~~~~-~-~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+.|++++|..+..+..... + .-.+..+++|+.|++++| .++.++ +.++++|+.|++++|..
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred CEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 9999999876655442100 0 012557789999999884 566674 88899999999998863
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=9.8e-25 Score=208.32 Aligned_cols=245 Identities=18% Similarity=0.174 Sum_probs=144.3
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cch
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTN 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~ 148 (492)
.++.+++.++.+..+|..+. +.++.|++++|. +.+..+..|..+++|++|+++ ++.+..+ |..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP------PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILI-------NNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC------TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECC-------SSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC------CCCeEEECCCCc---CCEeChhhhccCCCCCEEECC-------CCcCCeeCHHH
Confidence 45556666666666555432 566777777776 555445556777777777777 6666665 556
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc--ccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR--YLPVGIGELIN 226 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~ 226 (492)
+.++++|++|++++|. ++.+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 6677777777777776 666665543 567777777776333333446667777777777765532 33444555555
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+.... ++. .+ .++|+.|++++|.+++.
T Consensus 173 L~~L~l~~n~l~~-------------------------l~~-------~~--~~~L~~L~l~~n~l~~~----------- 207 (330)
T 1xku_A 173 LSYIRIADTNITT-------------------------IPQ-------GL--PPSLTELHLDGNKITKV----------- 207 (330)
T ss_dssp CCEEECCSSCCCS-------------------------CCS-------SC--CTTCSEEECTTSCCCEE-----------
T ss_pred cCEEECCCCcccc-------------------------CCc-------cc--cccCCEEECCCCcCCcc-----------
Confidence 5555544332211 110 00 14667777777664321
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeec
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
.+..+..+++|++|++++|.+.. +++.++..+++|+.|++++|.+......+..+++|++|++++|. ++.++
T Consensus 208 -~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 208 -DAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp -CTGGGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred -CHHHhcCCCCCCEEECCCCcCce--eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccC
Confidence 23345566677777777776665 43456666777777777777555333336666777777777665 44333
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=5.9e-25 Score=209.97 Aligned_cols=238 Identities=22% Similarity=0.230 Sum_probs=148.9
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cch
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTN 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~ 148 (492)
.++.+.+.++.+..+|..+. ++++.|++++|. +....+..|..+++|++|+++ ++.+..+ |..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~------~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS------PDTTLLDLQNND---ISELRKDDFKGLQHLYALVLV-------NNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC------TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECGGG
T ss_pred cCCEEECCCCCccccCCCCC------CCCeEEECCCCc---CCccCHhHhhCCCCCcEEECC-------CCccCccCHhH
Confidence 45667777777776665543 577777777776 666556667777777777777 6677665 456
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccc--cccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLR--YLPVGIGELI 225 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~ 225 (492)
+.++++|++|++++|. +..+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|.+.. ..+..+..+
T Consensus 98 ~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172 (332)
T ss_dssp STTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred hhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence 7777777777777777 667766554 677777777777 444443 46777777777777776532 334444444
Q ss_pred cccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhH
Q 011151 226 NLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRES 305 (492)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 305 (492)
+|+.|++..+.... ++. .+ .++|+.|++++|.+++.
T Consensus 173 ~L~~L~l~~n~l~~-------------------------l~~-------~~--~~~L~~L~l~~n~i~~~---------- 208 (332)
T 2ft3_A 173 KLNYLRISEAKLTG-------------------------IPK-------DL--PETLNELHLDHNKIQAI---------- 208 (332)
T ss_dssp CCSCCBCCSSBCSS-------------------------CCS-------SS--CSSCSCCBCCSSCCCCC----------
T ss_pred ccCEEECcCCCCCc-------------------------cCc-------cc--cCCCCEEECCCCcCCcc----------
Confidence 55555554443221 110 00 14666677777765432
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 376 (492)
.+..+..+++|++|++++|.+.. +++.++..+++|+.|++++|.+......+..+++|++|++++|.
T Consensus 209 --~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 209 --ELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp --CTTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred --CHHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 12345566677777777776666 54556667777777777777555322336667777777777665
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.2e-24 Score=205.83 Aligned_cols=248 Identities=19% Similarity=0.190 Sum_probs=171.7
Q ss_pred cceEEEEEEeecCCC---cccccccCccCCCCceEEEecc-CCccccccccchhhccCCeeeEEecchhhhhhcccccc-
Q 011151 69 KKILHLLLTLHRGAS---VPISIWGNVKGLRGLRSLLVES-DDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK- 143 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~- 143 (492)
.+++.++++++.+.. +|..+. ++++|++|++++ |. +.+.+|..|..+++|++|+++ ++.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~----~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls-------~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYIT-------HTNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG----GCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEE-------EECCEE
T ss_pred ceEEEEECCCCCccCCcccChhHh----CCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECc-------CCeeCC
Confidence 467788888877763 455444 778888888874 65 666677777778888888887 66665
Q ss_pred ccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCC-CCcEEecCCCccccccccccc
Q 011151 144 KIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLR-KLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 144 ~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~l~ 222 (492)
.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+...+|..+..++ +|++|++++|.+.+..|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 5677777788888888888873346777777788888888888875557777777777 788888888777666676666
Q ss_pred ccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhh
Q 011151 223 ELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR 302 (492)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 302 (492)
.++ |+.|+++.+..... . + ..+..+++|+.|++++|.++..
T Consensus 196 ~l~-L~~L~Ls~N~l~~~---~---------------------~-------~~~~~l~~L~~L~L~~N~l~~~------- 236 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGD---A---------------------S-------VLFGSDKNTQKIHLAKNSLAFD------- 236 (313)
T ss_dssp GCC-CSEEECCSSEEEEC---C---------------------G-------GGCCTTSCCSEEECCSSEECCB-------
T ss_pred CCc-ccEEECcCCcccCc---C---------------------C-------HHHhcCCCCCEEECCCCceeee-------
Confidence 665 66666655443320 0 0 2345566777788877775321
Q ss_pred hhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeecccccc
Q 011151 303 RESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQS 377 (492)
Q Consensus 303 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 377 (492)
+..+..+++|++|++++|.+... + |.++..+++|+.|++++|.+.+.+|....+++|+.|++++|+.
T Consensus 237 ------~~~~~~l~~L~~L~Ls~N~l~~~-~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 237 ------LGKVGLSKNLNGLDLRNNRIYGT-L-PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp ------GGGCCCCTTCCEEECCSSCCEEC-C-CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred ------cCcccccCCCCEEECcCCcccCc-C-ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 22255667788888877777631 4 6777777788888888777776777667777777777777763
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=3.9e-24 Score=203.42 Aligned_cols=231 Identities=26% Similarity=0.362 Sum_probs=137.5
Q ss_pred CCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCC
Q 011151 122 LTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLR 201 (492)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 201 (492)
.++++.|+++ ++.+..+|..+.++++|++|++++|. +..+|..++++++|++|++++|. +..+|..+++++
T Consensus 80 ~~~l~~L~L~-------~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELR-------SVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEE-------SSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred ccceeEEEcc-------CCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 4567777777 66777777767777777777777777 55777767777777777777776 446676677777
Q ss_pred CCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCC
Q 011151 202 KLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKN 281 (492)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~ 281 (492)
+|++|++++|...+.+|..+... . .. ..+.++++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~---------------------------~------------~~-------~~~~~l~~ 184 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLAST---------------------------D------------AS-------GEHQGLVN 184 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEE---------------------------C-------------C-------CCEEESTT
T ss_pred CCCEEECCCCCCccccChhHhhc---------------------------c------------ch-------hhhccCCC
Confidence 77777777765555554433210 0 00 11344556
Q ss_pred cceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-
Q 011151 282 LVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP- 360 (492)
Q Consensus 282 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~- 360 (492)
|+.|++++|.++ .++..+..+++|++|++++|.+.. + |..+..+++|+.|++++|...+.+|.
T Consensus 185 L~~L~L~~n~l~-------------~lp~~l~~l~~L~~L~L~~N~l~~--l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 185 LQSLRLEWTGIR-------------SLPASIANLQNLKSLKIRNSPLSA--L-GPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp CCEEEEEEECCC-------------CCCGGGGGCTTCCEEEEESSCCCC--C-CGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred CCEEECcCCCcC-------------cchHhhcCCCCCCEEEccCCCCCc--C-chhhccCCCCCEEECcCCcchhhhHHH
Confidence 666666666542 122334444555555555555544 4 33444555555555555544444443
Q ss_pred CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecC
Q 011151 361 LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG 440 (492)
Q Consensus 361 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (492)
++.++ +|+.|++++|..+ +.+|..+..+++|+.|+|++
T Consensus 249 ~~~l~------------------------------------~L~~L~L~~n~~~------~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 249 FGGRA------------------------------------PLKRLILKDCSNL------LTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp TTCCC------------------------------------CCCEEECTTCTTC------CBCCTTGGGCTTCCEEECTT
T ss_pred hcCCC------------------------------------CCCEEECCCCCch------hhcchhhhcCCCCCEEeCCC
Confidence 44444 4555544444322 12334455777788888888
Q ss_pred CCCcccCCcccCCCCCCCeEEEeCC
Q 011151 441 CCKLKALPDLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 441 c~~l~~l~~~l~~l~~L~~L~l~~c 465 (492)
|+.++.+|..+.++++|+.+++..+
T Consensus 287 n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCchhhccHHHhhccCceEEeCCHH
Confidence 7777778877777888887777744
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=5.4e-24 Score=221.75 Aligned_cols=147 Identities=22% Similarity=0.197 Sum_probs=123.4
Q ss_pred EEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhcc
Q 011151 74 LLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKL 152 (492)
Q Consensus 74 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l 152 (492)
++-++.++..+|..+. +.++.|++++|. ++...+..|..+++|++|+|+ ++.+..+++ .|.++
T Consensus 36 ~~c~~~~l~~vP~~lp------~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls-------~N~i~~i~~~~f~~L 99 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP------FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSL 99 (635)
T ss_dssp EECTTSCCSSCCSSSC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECTTTTTTC
T ss_pred EECCCCCcCccCCCCC------cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECC-------CCcCCCcChhHhcCC
Confidence 3344446777787654 589999999998 888667789999999999999 999999875 58999
Q ss_pred CcCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccc-cccccccccccccc
Q 011151 153 LHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLR-YLPVGIGELINLRR 229 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 229 (492)
++|++|+|++|. ++.+|. .+.++++|++|++++|. +..+| ..++++++|++|++++|.+.. ..|..+..+++|++
T Consensus 100 ~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 100 SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp TTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 999999999999 888875 47899999999999999 55555 458999999999999998754 46777889999999
Q ss_pred cceEEeecc
Q 011151 230 VTKFVVGGG 238 (492)
Q Consensus 230 L~l~~~~~~ 238 (492)
|+++.+...
T Consensus 178 L~L~~N~l~ 186 (635)
T 4g8a_A 178 LDLSSNKIQ 186 (635)
T ss_dssp EECCSSCCC
T ss_pred hcccCcccc
Confidence 998877554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=3.5e-23 Score=197.54 Aligned_cols=293 Identities=18% Similarity=0.165 Sum_probs=202.5
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCcccc-chhhh
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKL-PETLC 174 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~l-p~~~~ 174 (492)
+++.++++++. +.. +|..+ .+.|++|+++ ++.+..++. .+.++++|++|++++|. +..+ |..+.
T Consensus 32 ~l~~l~~~~~~---l~~-lp~~~--~~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLG---LEK-VPKDL--PPDTALLDLQ-------NNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSC---CCS-CCCSC--CTTCCEEECC-------SSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred CCeEEEecCCC---ccc-cCccC--CCCCeEEECC-------CCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence 67788887776 444 44323 2568888888 777877765 57888888888888888 5544 66788
Q ss_pred cCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
++++|++|++++|. +..+|..+. ++|++|++++|.+....+..+..+++|+.|++..+.... ..
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~----- 161 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--------SG----- 161 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--------GG-----
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc--------cC-----
Confidence 88888888888887 566776554 688888888887765555557777777777766553321 00
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
.....+..+++|+.|++++|.++..+ ..+ .++|++|++++|.+.. ++
T Consensus 162 ----------------~~~~~~~~l~~L~~L~l~~n~l~~l~-------------~~~--~~~L~~L~l~~n~l~~--~~ 208 (330)
T 1xku_A 162 ----------------IENGAFQGMKKLSYIRIADTNITTIP-------------QGL--PPSLTELHLDGNKITK--VD 208 (330)
T ss_dssp ----------------BCTTGGGGCTTCCEEECCSSCCCSCC-------------SSC--CTTCSEEECTTSCCCE--EC
T ss_pred ----------------cChhhccCCCCcCEEECCCCccccCC-------------ccc--cccCCEEECCCCcCCc--cC
Confidence 00034667888999999998865332 122 2789999999998877 55
Q ss_pred chhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCccc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEE 413 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 413 (492)
+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|. +..++..+ ..+++|+.|+++++.
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------------~~l~~L~~L~l~~N~- 274 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL------------ADHKYIQVVYLHNNN- 274 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTT------------TTCSSCCEEECCSSC-
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhh------------ccCCCcCEEECCCCc-
Confidence 77888999999999999987766553 7788999999999987 44444332 278899999998875
Q ss_pred ccccccCcccc-ccccCCCCcceEeecCCCCcc--cCCcccCCCCCCCeEEEeCCC
Q 011151 414 LEEWDFGTAIK-GEIIIMPRLSFLEISGCCKLK--ALPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 414 l~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~--~l~~~l~~l~~L~~L~l~~c~ 466 (492)
++.+......+ ......++|+.|++++|+... ..|..+..+++++.+++++|.
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 55543211100 011235788999999976532 234667778899999998873
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.8e-23 Score=199.72 Aligned_cols=292 Identities=17% Similarity=0.150 Sum_probs=208.7
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCcccc-chhhh
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKL-PETLC 174 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~l-p~~~~ 174 (492)
+++.++++++. +.. +|..+ .++|++|+++ ++.+..++ ..+.++++|++|++++|. +..+ |..+.
T Consensus 34 ~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~l~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLG---LKA-VPKEI--SPDTTLLDLQ-------NNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSC---CSS-CCSCC--CTTCCEEECC-------SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred cCCEEECCCCC---ccc-cCCCC--CCCCeEEECC-------CCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 68888888887 554 45433 3678999999 88888775 468889999999999998 5554 66788
Q ss_pred cCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
++++|++|++++|. +..+|..+. ++|++|++++|.+....+..+..+++|+.|++..+.... . +
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~---~-------- 163 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN--S---G-------- 163 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG--G---G--------
T ss_pred CcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc--C---C--------
Confidence 89999999999988 667776655 789999999987755444557788888888877664431 0 0
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
..+ ..+..+ +|+.|++++|.+++.+ ..+ .++|++|++++|.+.. ++
T Consensus 164 ---------~~~-------~~~~~l-~L~~L~l~~n~l~~l~-------------~~~--~~~L~~L~l~~n~i~~--~~ 209 (332)
T 2ft3_A 164 ---------FEP-------GAFDGL-KLNYLRISEAKLTGIP-------------KDL--PETLNELHLDHNKIQA--IE 209 (332)
T ss_dssp ---------SCT-------TSSCSC-CCSCCBCCSSBCSSCC-------------SSS--CSSCSCCBCCSSCCCC--CC
T ss_pred ---------CCc-------ccccCC-ccCEEECcCCCCCccC-------------ccc--cCCCCEEECCCCcCCc--cC
Confidence 000 123344 7888888888865432 222 2689999999999887 65
Q ss_pred chhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCccc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEE 413 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 413 (492)
+..+..+++|+.|++++|.+....+. +..+++|++|++++|. ++.++..+ ..+++|+.|+++++.
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------------~~l~~L~~L~l~~N~- 275 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL------------PDLKLLQVVYLHTNN- 275 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTG------------GGCTTCCEEECCSSC-
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhh------------hcCccCCEEECCCCC-
Confidence 67788999999999999987776654 7889999999999987 55555432 278899999999875
Q ss_pred ccccccCcccccc-ccCCCCcceEeecCCCCc--ccCCcccCCCCCCCeEEEeCCC
Q 011151 414 LEEWDFGTAIKGE-IIIMPRLSFLEISGCCKL--KALPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 414 l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l--~~l~~~l~~l~~L~~L~l~~c~ 466 (492)
++.+......+.. ...+++|+.|++++|+.. ...|..+..+++|+.+++++|.
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5554422110100 112678999999998754 3345677889999999999885
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=3.6e-24 Score=202.41 Aligned_cols=250 Identities=19% Similarity=0.172 Sum_probs=199.3
Q ss_pred CCceEEEeccCCcccccc--ccchhhccCCeeeEEecchhhhhhcc-cccc-ccCchhhccCcCCEEEccCCCCccccch
Q 011151 96 RGLRSLLVESDDYSWFSE--VLPQLFDKLTCLRALKLEVRQRWLCK-NFIK-KIPTNIEKLLHLKYLSLCGQREIEKLPE 171 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~ 171 (492)
.+++.|+++++. +.+ .+|..+..+++|++|+++ + +.+. .+|..+.++++|++|++++|.+.+.+|.
T Consensus 50 ~~l~~L~L~~~~---l~~~~~~~~~l~~l~~L~~L~L~-------~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN---LPKPYPIPSSLANLPYLNFLYIG-------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC---CSSCEECCGGGGGCTTCSEEEEE-------EETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC---ccCCcccChhHhCCCCCCeeeCC-------CCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 679999999998 776 688889999999999998 4 5554 6888899999999999999994458899
Q ss_pred hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccc-cccccceEEeecccCCCcCcccccc
Q 011151 172 TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELI-NLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
.+.++++|++|++++|.+...+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++..+......
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--------- 190 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--------- 190 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC---------
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC---------
Confidence 999999999999999996668899999999999999999998778898898887 8898888766543200
Q ss_pred ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 251 LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 251 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
+ ..+..++ |+.|++++|.++ ...+..+..+++|+.|++++|.+..
T Consensus 191 ---------------~-------~~~~~l~-L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 191 ---------------P-------PTFANLN-LAFVDLSRNMLE------------GDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp ---------------C-------GGGGGCC-CSEEECCSSEEE------------ECCGGGCCTTSCCSEEECCSSEECC
T ss_pred ---------------C-------hHHhCCc-ccEEECcCCccc------------CcCCHHHhcCCCCCEEECCCCceee
Confidence 1 1233444 888999988853 2345667788999999999998875
Q ss_pred cccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceecc
Q 011151 331 NVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409 (492)
Q Consensus 331 ~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (492)
. +..+..+++|++|++++|.+.+.+|. +..+++|++|++++|.....++.. ..+++|+.|++.
T Consensus 236 --~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-------------~~l~~L~~l~l~ 299 (313)
T 1ogq_A 236 --D-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-------------GNLQRFDVSAYA 299 (313)
T ss_dssp --B-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-------------TTGGGSCGGGTC
T ss_pred --e-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-------------ccccccChHHhc
Confidence 4 34477889999999999988766665 788899999999998744444432 167888888888
Q ss_pred Cccccc
Q 011151 410 DMEELE 415 (492)
Q Consensus 410 ~~~~l~ 415 (492)
+++.+.
T Consensus 300 ~N~~lc 305 (313)
T 1ogq_A 300 NNKCLC 305 (313)
T ss_dssp SSSEEE
T ss_pred CCCCcc
Confidence 776543
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.2e-23 Score=205.73 Aligned_cols=334 Identities=18% Similarity=0.149 Sum_probs=158.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCee-------------eEEecchhhh
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCL-------------RALKLEVRQR 135 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L-------------~~L~L~~~~~ 135 (492)
..++.+.++++.+..+|..+. ++++|+.|++++|. +.+.+|..++.+++| +.|+++
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~----~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~---- 79 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAE----NVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELN---- 79 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT----
T ss_pred ccchhhhcccCchhhCChhHh----cccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEec----
Confidence 578889999999977887776 89999999999987 777788878877765 788888
Q ss_pred hhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc
Q 011151 136 WLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 136 ~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 215 (492)
++.+..+|.. .++|++|++++|. +..+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+..
T Consensus 80 ---~~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 80 ---NLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp ---TSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSS
T ss_pred ---CCccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCC
Confidence 7777777652 3577777777777 5556643 3556666666665 3333321 1456666666665532
Q ss_pred cccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCC
Q 011151 216 YLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDG 295 (492)
Q Consensus 216 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 295 (492)
+| .++.+++|+.|+++.+.... ++..+ ..|+.+.+....-.. . ..+..+++|+.|++++|.+++.
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~------~~L~~L~L~~n~l~~-l-----~~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP------PSLEFIAAGNNQLEE-L-----PELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC------TTCCEEECCSSCCSS-C-----CCCTTCTTCCEEECCSSCCSSC
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc------ccccEEECcCCcCCc-C-----ccccCCCCCCEEECCCCcCCcC
Confidence 44 35556666666655554332 11111 123333332221100 0 0134445555555555543321
Q ss_pred chhh-------HhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccc
Q 011151 296 DEEQ-------ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLE 368 (492)
Q Consensus 296 ~~~~-------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~ 368 (492)
+... ........++ .+..+++|++|++++|.+.. + |. .+++|+.|++++|.+.+ +|.. +++|+
T Consensus 211 ~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l-~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~ 280 (454)
T 1jl5_A 211 PDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--L-PD---LPPSLEALNVRDNYLTD-LPEL--PQSLT 280 (454)
T ss_dssp CCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--C-CS---CCTTCCEEECCSSCCSC-CCCC--CTTCC
T ss_pred CCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--c-cc---cccccCEEECCCCcccc-cCcc--cCcCC
Confidence 1000 0000000111 24445555555555555544 4 32 22555555555554433 2221 35666
Q ss_pred eeeccccccceeecccccCCc--C--CCCCCccccc-ccccceeccCcccccccccCccccccccCCCCcceEeecCCCC
Q 011151 369 SLYIEGMQSVKRVGNEFLGVE--S--DTDGSSIIAF-PKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCK 443 (492)
Q Consensus 369 ~L~l~~~~~l~~~~~~~~~~~--~--~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 443 (492)
+|++++|. ++.++....... . ......+..+ ++|+.|+++++. ++. +|. .+++|+.|++++| .
T Consensus 281 ~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~------lp~---~~~~L~~L~L~~N-~ 348 (454)
T 1jl5_A 281 FLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIE------LPA---LPPRLERLIASFN-H 348 (454)
T ss_dssp EEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSC------CCC---CCTTCCEEECCSS-C
T ss_pred EEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccc------ccc---cCCcCCEEECCCC-c
Confidence 66666665 332221000000 0 0000001122 355555555542 222 222 3578889999885 5
Q ss_pred cccCCcccCCCCCCCeEEEeCCCc
Q 011151 444 LKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 444 l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
++.+|. .+++|++|++++|+.
T Consensus 349 l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 349 LAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CSCCCC---CCTTCCEEECCSSCC
T ss_pred cccccc---hhhhccEEECCCCCC
Confidence 667876 478899999998864
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=8.5e-26 Score=226.11 Aligned_cols=367 Identities=17% Similarity=0.090 Sum_probs=246.4
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhcccccccc-C
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~ 146 (492)
+++++++++++.+...+ +...+..+++|+.|++++|...... ..++..+..+++|++|+++ ++.+... +
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-------~n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-------SNELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-------TCCCHHHHH
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-------CCcCChHHH
Confidence 68999999999887532 2212347899999999999832111 1356778889999999999 7777552 2
Q ss_pred ch-hhccC----cCCEEEccCCCCcc-----ccchhhhcCCCCCeeecCcccccccccccc-----cCCCCCcEEecCCC
Q 011151 147 TN-IEKLL----HLKYLSLCGQREIE-----KLPETLCELYNLERLNITSCNHLRELPQGI-----GKLRKLMYLDNDDT 211 (492)
Q Consensus 147 ~~-~~~l~----~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-----~~l~~L~~L~l~~~ 211 (492)
.. ...+. +|++|++++|. ++ .++..+..+++|++|++++|.+....+..+ ...++|++|++++|
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 22 33455 79999999999 55 467788999999999999998443323222 23678999999999
Q ss_pred ccccc----ccccccccccccccceEEeecccCCCcCccccc-----cccccCCceEecCCCCCChhhhhHhhhcccCCc
Q 011151 212 WFLRY----LPVGIGELINLRRVTKFVVGGGYDRARSLGSLK-----KLNLLRECSIRGLGGVSDAGEARRAELEKKKNL 282 (492)
Q Consensus 212 ~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L 282 (492)
.+... ++..+..+++|++|+++.+.... ..+..+. ..+.|+.+.+..+.-.......+...+..+++|
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNNDINE---AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH---HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCCcch---HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 87653 34556678999999998876543 1111221 244677777777644433333445667789999
Q ss_pred ceEecccccCCCCchhhHhhhhHHHHhhh-cCCCCCccEEEEeecCCCccc---cCchhhhccccccEEEEecccCCCcC
Q 011151 283 VELGLHFDRLRDGDEEQARRRESERLLEA-LGPPPNLKELVIDEYRGRRNV---VPRNWVMSLTNLRALLLKNCRNCEHL 358 (492)
Q Consensus 283 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~---l~~~~~~~l~~L~~L~L~~~~~~~~~ 358 (492)
++|++++|.+++. ....+... ...+++|++|++++|.+.... + +..+..+++|+.|++++|.+.+..
T Consensus 230 ~~L~Ls~n~l~~~--------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 230 RELALGSNKLGDV--------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp CEEECCSSBCHHH--------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCCCHHHH
T ss_pred cEEeccCCcCChH--------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCCCchHH
Confidence 9999999985321 11222233 335789999999999876632 3 455667899999999999664321
Q ss_pred C----C--CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcccccccc-CCC
Q 011151 359 P----P--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEII-IMP 431 (492)
Q Consensus 359 ~----~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~ 431 (492)
+ . ....++|++|++++|. +...+..... ..+..+++|++|+++++. +.+.... .+...+. ..+
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n~-i~~~~~~-~l~~~l~~~~~ 370 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS-------SVLAQNRFLLELQISNNR-LEDAGVR-ELCQGLGQPGS 370 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH-------HHHHHCSSCCEEECCSSB-CHHHHHH-HHHHHHTSTTC
T ss_pred HHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH-------HHHhhCCCccEEEccCCc-cccccHH-HHHHHHcCCCC
Confidence 1 1 2234689999999987 3322111111 012256899999999874 5443211 0111121 267
Q ss_pred CcceEeecCCCCcc----cCCcccCCCCCCCeEEEeCCCc
Q 011151 432 RLSFLEISGCCKLK----ALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 432 ~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+|++|++++|..-. .+|..+..+++|++|++++|+.
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 99999999975432 5777777899999999999974
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.2e-22 Score=201.54 Aligned_cols=303 Identities=21% Similarity=0.208 Sum_probs=168.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.++++++.+..+|. ..++|+.|++++|. +.+ ++.. .++|++|+++ ++.+..+| .
T Consensus 91 ~~L~~L~l~~n~l~~lp~-------~~~~L~~L~l~~n~---l~~-l~~~---~~~L~~L~L~-------~n~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE-------LPQSLKSLLVDNNN---LKA-LSDL---PPLLEYLGVS-------NNQLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSSCCSSCCC-------CCTTCCEEECCSSC---CSC-CCSC---CTTCCEEECC-------SSCCSSCC-C
T ss_pred CCCCEEEccCCcCCcccc-------ccCCCcEEECCCCc---cCc-ccCC---CCCCCEEECc-------CCCCCCCc-c
Confidence 466666666666665442 23566777777665 333 2221 1467777777 66666666 4
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..+|.. ..+|++|++++|. +..+| .++++++|++|++++|.+.+ +|... ++|+
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCc-CcccCCC---cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---Cccc
Confidence 6677777777777776 5556543 2467777777776 44555 46677777777777775532 33322 3666
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|+++.+.... +..+..++.|+.+.+....-.. . -...++|+.|++++|.+++.+
T Consensus 219 ~L~l~~n~l~~-----lp~~~~l~~L~~L~l~~N~l~~-l-------~~~~~~L~~L~l~~N~l~~l~------------ 273 (454)
T 1jl5_A 219 SIVAGNNILEE-----LPELQNLPFLTTIYADNNLLKT-L-------PDLPPSLEALNVRDNYLTDLP------------ 273 (454)
T ss_dssp EEECCSSCCSS-----CCCCTTCTTCCEEECCSSCCSS-C-------CSCCTTCCEEECCSSCCSCCC------------
T ss_pred EEECcCCcCCc-----ccccCCCCCCCEEECCCCcCCc-c-------cccccccCEEECCCCcccccC------------
Confidence 66666664442 1124455555555554322110 0 012356777777777654321
Q ss_pred hhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCC
Q 011151 309 LEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGV 388 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 388 (492)
..+++|++|++++|.+.. + +. ..++|++|++++|.+.+ ++.+ .++|++|++++|. +..++.
T Consensus 274 ----~~~~~L~~L~ls~N~l~~--l-~~---~~~~L~~L~l~~N~l~~-i~~~--~~~L~~L~Ls~N~-l~~lp~----- 334 (454)
T 1jl5_A 274 ----ELPQSLTFLDVSENIFSG--L-SE---LPPNLYYLNASSNEIRS-LCDL--PPSLEELNVSNNK-LIELPA----- 334 (454)
T ss_dssp ----CCCTTCCEEECCSSCCSE--E-SC---CCTTCCEEECCSSCCSE-ECCC--CTTCCEEECCSSC-CSCCCC-----
T ss_pred ----cccCcCCEEECcCCccCc--c-cC---cCCcCCEEECcCCcCCc-ccCC--cCcCCEEECCCCc-cccccc-----
Confidence 113567777777776655 4 22 12567777777775543 2221 1477888887776 332221
Q ss_pred cCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcc--cCCcccCCC------------
Q 011151 389 ESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLK--ALPDLLLQK------------ 454 (492)
Q Consensus 389 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~l~~l------------ 454 (492)
.+++|+.|+++++. ++. +|. .+++|++|++++|...+ .+|..+..+
T Consensus 335 ----------~~~~L~~L~L~~N~-l~~------lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 335 ----------LPPRLERLIASFNH-LAE------VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp ----------CCTTCCEEECCSSC-CSC------CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred ----------cCCcCCEEECCCCc-ccc------ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence 46789999988874 443 333 46889999999865544 567676666
Q ss_pred -CCCCeEEEeCCCc
Q 011151 455 -TTLQKLLIGRCPI 467 (492)
Q Consensus 455 -~~L~~L~l~~c~~ 467 (492)
++|+.|++++|+.
T Consensus 395 ~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 395 PQNLKQLHVETNPL 408 (454)
T ss_dssp --------------
T ss_pred cCcCCEEECCCCcC
Confidence 7899999998874
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=4.9e-23 Score=195.80 Aligned_cols=223 Identities=22% Similarity=0.318 Sum_probs=153.3
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
..+.++.|++++|. +.. +|..+..+++|++|+++ ++.+..+|..+.++++|++|++++|. +..+|..+
T Consensus 79 ~~~~l~~L~L~~n~---l~~-lp~~l~~l~~L~~L~L~-------~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVP---LPQ-FPDQAFRLSHLQHMTID-------AAGLMELPDTMQQFAGLETLTLARNP-LRALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSC---CSS-CCSCGGGGTTCSEEEEE-------SSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG
T ss_pred cccceeEEEccCCC---chh-cChhhhhCCCCCEEECC-------CCCccchhHHHhccCCCCEEECCCCc-cccCcHHH
Confidence 34778888888887 554 56667778888888888 77777888778888888888888888 66888888
Q ss_pred hcCCCCCeeecCcccccccccccccC---------CCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcC
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGK---------LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARS 244 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~---------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 244 (492)
.++++|++|++++|...+.+|..+.. +++|++|++++|.+. .+|..+..+++|+.|++..+....
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~----- 220 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA----- 220 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-----
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-----
Confidence 88888888888887767777766543 777777777777654 566666666677766666543221
Q ss_pred ccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEe
Q 011151 245 LGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVID 324 (492)
Q Consensus 245 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 324 (492)
++ ..+..+++|+.|++++|.+. ...+..+..+++|++|+++
T Consensus 221 --------------------l~-------~~l~~l~~L~~L~Ls~n~~~------------~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 221 --------------------LG-------PAIHHLPKLEELDLRGCTAL------------RNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp --------------------CC-------GGGGGCTTCCEEECTTCTTC------------CBCCCCTTCCCCCCEEECT
T ss_pred --------------------Cc-------hhhccCCCCCEEECcCCcch------------hhhHHHhcCCCCCCEEECC
Confidence 01 12445566777777776632 2234455566677777777
Q ss_pred ecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeecccc
Q 011151 325 EYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGM 375 (492)
Q Consensus 325 ~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~ 375 (492)
+|..... + |..+..+++|+.|++++|...+.+|. ++.+++|+.+++..+
T Consensus 262 ~n~~~~~-~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 262 DCSNLLT-L-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCB-C-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhh-c-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 6665542 4 66667777777777777777776665 667777777776643
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=4.3e-22 Score=187.86 Aligned_cols=242 Identities=21% Similarity=0.143 Sum_probs=173.6
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc---Cchh
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI---PTNI 149 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~ 149 (492)
.+...++.+..+|..+. ++|+.|++++|. +....+..|..+++|++|+++ ++.+..+ +..+
T Consensus 11 ~l~c~~~~l~~ip~~~~------~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP------SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-------SNGLSFKGCCSQSD 74 (306)
T ss_dssp EEECCSSCCSSCCSCCC------TTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCEEEEEEHHH
T ss_pred EEEcCCCCcccCCCCCC------CCCCEEECCCCc---cCccCHhHhhccccCCEEECC-------CCccCcccCccccc
Confidence 45666667777666543 678888888887 666444557888888888888 7776654 4566
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
.++++|++|++++|. +..+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|.+....+..+..+++|
T Consensus 75 ~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 75 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred ccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 778888888888888 77787778888888888888887 44444 357788888888888887766666667777777
Q ss_pred cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
+.|++..+.... ... + ..+..+++|+.|++++|.+++.
T Consensus 153 ~~L~l~~n~l~~--~~~---------------------~-------~~~~~l~~L~~L~Ls~n~l~~~------------ 190 (306)
T 2z66_A 153 EVLKMAGNSFQE--NFL---------------------P-------DIFTELRNLTFLDLSQCQLEQL------------ 190 (306)
T ss_dssp CEEECTTCEEGG--GEE---------------------C-------SCCTTCTTCCEEECTTSCCCEE------------
T ss_pred CEEECCCCcccc--ccc---------------------h-------hHHhhCcCCCEEECCCCCcCCc------------
Confidence 777766554321 000 0 1244566788888888875322
Q ss_pred HhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCC-ccceeeccccc
Q 011151 308 LLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLP-SLESLYIEGMQ 376 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~-~L~~L~l~~~~ 376 (492)
.+..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+.+..+. +..++ +|++|++++|+
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CHHHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 23456677888888888888777 6455677888899999998887776654 66664 88999998887
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=5.2e-23 Score=212.57 Aligned_cols=350 Identities=12% Similarity=0.057 Sum_probs=180.3
Q ss_pred cceEEEEEEeecCCCc-ccccccCccC-CCC-ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-
Q 011151 69 KKILHLLLTLHRGASV-PISIWGNVKG-LRG-LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK- 144 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~-~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~- 144 (492)
++++.++++++.+... +..+. . ++. |+.|++++|......+ ++.....+++|++|+|+ ++.+..
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~----~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~L~~L~L~-------~~~~~~~ 179 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLA----KARADDLETLKLDKCSGFTTDG-LLSIVTHCRKIKTLLME-------ESSFSEK 179 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHH----HHHGGGCCEEEEESCEEEEHHH-HHHHHHHCTTCSEEECT-------TCEEECC
T ss_pred CCCCeEEeeccEecHHHHHHHH----HhccccCcEEECcCCCCcCHHH-HHHHHhhCCCCCEEECc-------cccccCc
Confidence 5677788877765531 12222 2 334 7777777765322222 34444567777777777 554432
Q ss_pred ----cCchhhccCcCCEEEccCCCCc----cccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcc---
Q 011151 145 ----IPTNIEKLLHLKYLSLCGQREI----EKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWF--- 213 (492)
Q Consensus 145 ----l~~~~~~l~~L~~L~L~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~--- 213 (492)
++..+.++++|++|++++|... ..++..+.++++|++|++++|. ...+|..+..+++|++|+++....
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccc
Confidence 2233456677777777777622 2344445567777777777766 444555556666666666653211
Q ss_pred -----------------------cccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhh
Q 011151 214 -----------------------LRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGE 270 (492)
Q Consensus 214 -----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~ 270 (492)
...+|..+..+++|++|++..+.... ......+..+++|+.+.+.. .+ ...
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~--~~--~~~ 332 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET--EDHCTLIQKCPNLEVLETRN--VI--GDR 332 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH--HHHHHHHTTCTTCCEEEEEG--GG--HHH
T ss_pred hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH--HHHHHHHHhCcCCCEEeccC--cc--CHH
Confidence 12233334444555555554443211 10111123344444444431 00 111
Q ss_pred hhHhhhcccCCcceEeccc-----------ccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh
Q 011151 271 ARRAELEKKKNLVELGLHF-----------DRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM 339 (492)
Q Consensus 271 ~~~~~l~~~~~L~~L~l~~-----------~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~ 339 (492)
........+++|++|++.. +.+ ....+......+++|++|+++.+.+.... +..+.
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~L~~L~l~~~~l~~~~--~~~l~ 399 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV-----------SQRGLIALAQGCQELEYMAVYVSDITNES--LESIG 399 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-----------CHHHHHHHHHHCTTCSEEEEEESCCCHHH--HHHHH
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCcc-----------CHHHHHHHHhhCccCeEEEeecCCccHHH--HHHHH
Confidence 2222334556666666662 222 11122222334566666666555544421 22333
Q ss_pred -ccccccEEEEec---ccCCCcCC------C-CCCCCccceeecccccc-ceeecccccCCcCCCCCCccccccccccee
Q 011151 340 -SLTNLRALLLKN---CRNCEHLP------P-LGKLPSLESLYIEGMQS-VKRVGNEFLGVESDTDGSSIIAFPKLKHLK 407 (492)
Q Consensus 340 -~l~~L~~L~L~~---~~~~~~~~------~-l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 407 (492)
.+++|+.|++++ |...++.| . +.++++|++|+++.|.. +........ ...+++|+.|+
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------~~~~~~L~~L~ 469 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------GQYSPNVRWML 469 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------HHSCTTCCEEE
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------HHhCccceEee
Confidence 366677777763 22222221 1 33466777777765542 111111111 01467788888
Q ss_pred ccCcccccccccCccccccccCCCCcceEeecCCCCccc--CCcccCCCCCCCeEEEeCCC
Q 011151 408 FYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA--LPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 408 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~l~~c~ 466 (492)
+++|. +++.. ++..+..+++|++|+|++|+ ++. ++..+..+++|++|++++|.
T Consensus 470 L~~n~-l~~~~----~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 470 LGYVG-ESDEG----LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp ECSCC-SSHHH----HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCCC-CCHHH----HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 87764 33221 23344578999999999987 442 44445568899999999998
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=186.27 Aligned_cols=268 Identities=16% Similarity=0.089 Sum_probs=196.2
Q ss_pred EEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhcc
Q 011151 74 LLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKL 152 (492)
Q Consensus 74 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l 152 (492)
.+.+++.+..+|..+. ++|+.|++++|. +....+..|..+++|++|+++ ++.+..++ ..+.++
T Consensus 36 c~~~~~~l~~iP~~~~------~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT------EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLT-------SNGINTIEEDSFSSL 99 (353)
T ss_dssp EECCSTTCSSCCTTCC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECTTTTTTC
T ss_pred eeCCCCCccccccccc------ccCcEEECCCCc---CcccCHHHhccCCCCCEEECC-------CCccCccCHhhcCCC
Confidence 5667778888887654 689999999998 777556578999999999999 88888775 568899
Q ss_pred CcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccc--cccCCCCCcEEecCCCc-cccccccccccccccc
Q 011151 153 LHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQ--GIGKLRKLMYLDNDDTW-FLRYLPVGIGELINLR 228 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~ 228 (492)
++|++|++++|. ++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|. +....+..+..+++|+
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 999999999999 7777766 7889999999999998 666765 68889999999999985 4444456788899999
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|++..+..... ....+..++.|+.+.+..... ... ....+..+++|+.|++++|.+++.... .
T Consensus 178 ~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~l-~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~---------~ 241 (353)
T 2z80_A 178 ELEIDASDLQSY---EPKSLKSIQNVSHLILHMKQH-ILL---LEIFVDVTSSVECLELRDTDLDTFHFS---------E 241 (353)
T ss_dssp EEEEEETTCCEE---CTTTTTTCSEEEEEEEECSCS-TTH---HHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred EEECCCCCcCcc---CHHHHhccccCCeecCCCCcc-ccc---hhhhhhhcccccEEECCCCcccccccc---------c
Confidence 999988866532 233445556666666655432 211 112345678999999999987654321 0
Q ss_pred hhhcCCCCCccEEEEeecCCCcc---ccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 309 LEALGPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
.........++.++++++.+... .+ |.++..+++|+.|++++|.+....+. +..+++|++|++++|+
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l-~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHH-HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccchhhccccccccccCcchhhh-HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 11123456788888887765542 14 55677889999999999977643333 5788999999999886
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=4.2e-22 Score=185.92 Aligned_cols=225 Identities=19% Similarity=0.177 Sum_probs=156.6
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~ 150 (492)
+.++..++++..+|..+ .++|+.|++++|. +....+..|..+++|++|+++ ++.+..+ |..+.
T Consensus 14 ~~~~c~~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~-------~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI------PAASQRIFLHGNR---ISHVPAASFRACRNLTILWLH-------SNVLARIDAAAFT 77 (285)
T ss_dssp CEEECCSSCCSSCCTTC------CTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTTT
T ss_pred eEEEcCcCCcccCCcCC------CCCceEEEeeCCc---CCccCHHHcccCCCCCEEECC-------CCccceeCHhhcC
Confidence 45666777777766544 3688888888887 667566678888889999988 7777776 56688
Q ss_pred ccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 151 KLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
++++|++|++++|..++.+ |..+..+++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 8888899998888645555 566788888888888888854444666788888888888888775444444667777777
Q ss_pred cceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHh
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLL 309 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 309 (492)
|++..+.... + +. ..+..+++|+.|++++|.+++ ..+
T Consensus 158 L~l~~n~l~~--------~-----------------~~------~~~~~l~~L~~L~l~~n~l~~------------~~~ 194 (285)
T 1ozn_A 158 LFLHGNRISS--------V-----------------PE------RAFRGLHSLDRLLLHQNRVAH------------VHP 194 (285)
T ss_dssp EECCSSCCCE--------E-----------------CT------TTTTTCTTCCEEECCSSCCCE------------ECT
T ss_pred EECCCCcccc--------c-----------------CH------HHhcCccccCEEECCCCcccc------------cCH
Confidence 7666543221 0 00 124456677777777777432 123
Q ss_pred hhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc
Q 011151 310 EALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357 (492)
Q Consensus 310 ~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~ 357 (492)
..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+..+
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred hHccCcccccEeeCCCCcCCc--CCHHHcccCcccCEEeccCCCccCC
Confidence 455666777777777777766 5455677777777777777765544
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=2.9e-24 Score=214.91 Aligned_cols=368 Identities=16% Similarity=0.130 Sum_probs=240.7
Q ss_pred cceEEEEEEeecCCCc-ccccccCccCCCCceEEEeccCCccccccccc-hhhccCC----eeeEEecchhhhhhccccc
Q 011151 69 KKILHLLLTLHRGASV-PISIWGNVKGLRGLRSLLVESDDYSWFSEVLP-QLFDKLT----CLRALKLEVRQRWLCKNFI 142 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~----~L~~L~L~~~~~~~~~~~~ 142 (492)
++++.++++++.+... ...+...+..+++|++|++++|. +....+ ..+..++ +|++|+++ ++.+
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~L~-------~n~i 97 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE---LGDVGVHCVLQGLQTPSCKIQKLSLQ-------NCCL 97 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC---CHHHHHHHHHHTTCSTTCCCCEEECT-------TSCC
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc---CChHHHHHHHHHHhhCCCceeEEEcc-------CCCC
Confidence 5889999999998741 11233334488999999999998 544333 2234455 79999999 7777
Q ss_pred c-----ccCchhhccCcCCEEEccCCCCcc-ccchhhh-----cCCCCCeeecCcccccc----cccccccCCCCCcEEe
Q 011151 143 K-----KIPTNIEKLLHLKYLSLCGQREIE-KLPETLC-----ELYNLERLNITSCNHLR----ELPQGIGKLRKLMYLD 207 (492)
Q Consensus 143 ~-----~l~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~-----~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~ 207 (492)
. .++..+..+++|++|++++|. ++ ..+..+. ...+|++|++++|.+.. .++..+..+++|++|+
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6 457778899999999999999 54 3233332 25689999999998544 3456677889999999
Q ss_pred cCCCccccccccccc-----ccccccccceEEeecccCCC-cCccccccccccCCceEecCCCCCChh-hhh-Hhhhccc
Q 011151 208 NDDTWFLRYLPVGIG-----ELINLRRVTKFVVGGGYDRA-RSLGSLKKLNLLRECSIRGLGGVSDAG-EAR-RAELEKK 279 (492)
Q Consensus 208 l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~~l~~~~~~~~~~~~-~~~-~~~l~~~ 279 (492)
+++|.+....+..+. ..++|+.|++..+....... .....+..++.|+.+++.... +...+ ..+ ......+
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPS 255 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTT
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCC
Confidence 999987554343333 25689999998876553100 123335566778777776642 21111 111 1222358
Q ss_pred CCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh-----ccccccEEEEecccC
Q 011151 280 KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM-----SLTNLRALLLKNCRN 354 (492)
Q Consensus 280 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~-----~l~~L~~L~L~~~~~ 354 (492)
++|+.|++++|.+++. ....++..+..+++|++|++++|.+.... +..+. ..++|+.|++++|.+
T Consensus 256 ~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 256 SRLRTLWIWECGITAK--------GCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp CCCCEEECTTSCCCHH--------HHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCceEEECcCCCCCHH--------HHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHHhccCCccceeeEcCCCCC
Confidence 8999999999986421 22335666777899999999999875421 22333 236999999999986
Q ss_pred CCc----CCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccC
Q 011151 355 CEH----LPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIII 429 (492)
Q Consensus 355 ~~~----~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 429 (492)
... ++. +..+++|++|++++|. +...+........ ....++|+.|++++|. +++... ..+|..+..
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l------~~~~~~L~~L~L~~n~-i~~~~~-~~l~~~l~~ 396 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGL------GQPGSVLRVLWLADCD-VSDSSC-SSLAATLLA 396 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHH------TSTTCCCCEEECTTSC-CCHHHH-HHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHH------cCCCCceEEEECCCCC-CChhhH-HHHHHHHHh
Confidence 654 222 5567999999999996 4433211111000 0026799999999984 442111 134556778
Q ss_pred CCCcceEeecCCCCccc----CCccc-CCCCCCCeEEEeCCCc
Q 011151 430 MPRLSFLEISGCCKLKA----LPDLL-LQKTTLQKLLIGRCPI 467 (492)
Q Consensus 430 ~~~L~~L~l~~c~~l~~----l~~~l-~~l~~L~~L~l~~c~~ 467 (492)
+++|++|++++|+.-.. +...+ ....+|+.|++.++..
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 99999999999754321 11112 1245788888777654
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.6e-22 Score=208.93 Aligned_cols=369 Identities=17% Similarity=0.094 Sum_probs=204.0
Q ss_pred cceEEEEEEeecC----CCcccc--------cccCccCCCCceEEEeccCCccccccccchhhcc-CCe-eeEEecchhh
Q 011151 69 KKILHLLLTLHRG----ASVPIS--------IWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDK-LTC-LRALKLEVRQ 134 (492)
Q Consensus 69 ~~~~~l~l~~~~~----~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~-L~~L~L~~~~ 134 (492)
++++++.+.++.. ..+|.. +......+++|+.|++++|. +.+..+..+.. ++. |++|+++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---i~~~~~~~l~~~~~~~L~~L~L~--- 146 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI---VSDLDLDRLAKARADDLETLKLD--- 146 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB---CCHHHHHHHHHHHGGGCCEEEEE---
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE---ecHHHHHHHHHhccccCcEEECc---
Confidence 5799999987432 111111 11111268999999999996 55544554544 444 9999998
Q ss_pred hhhcccc-c--cccCchhhccCcCCEEEccCCCCccc----cchhhhcCCCCCeeecCccccc----ccccccccCCCCC
Q 011151 135 RWLCKNF-I--KKIPTNIEKLLHLKYLSLCGQREIEK----LPETLCELYNLERLNITSCNHL----RELPQGIGKLRKL 203 (492)
Q Consensus 135 ~~~~~~~-~--~~l~~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L 203 (492)
++. + ..++....++++|++|++++|.+.+. ++.....+++|++|++++|... ..++..+.++++|
T Consensus 147 ----~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 147 ----KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp ----SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred ----CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 443 2 22334456899999999999983333 4445678999999999999854 3555566789999
Q ss_pred cEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcc
Q 011151 204 MYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLV 283 (492)
Q Consensus 204 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 283 (492)
++|++++|.+. .+|..+..+++|++|.+...............+..++.|+.+.+..... ......+..+++|+
T Consensus 223 ~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 223 VSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-----NEMPILFPFAAQIR 296 (592)
T ss_dssp CEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-----TTGGGGGGGGGGCC
T ss_pred cEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-----hHHHHHHhhcCCCc
Confidence 99999999764 4677788889999988865332211122333344444444444433211 01112344455555
Q ss_pred eEecccccCCCCchhhH-------------hhhhHHHHhhhcCCCCCccEEEEee----------cC-CCccccCchhhh
Q 011151 284 ELGLHFDRLRDGDEEQA-------------RRRESERLLEALGPPPNLKELVIDE----------YR-GRRNVVPRNWVM 339 (492)
Q Consensus 284 ~L~l~~~~l~~~~~~~~-------------~~~~~~~~~~~l~~~~~L~~L~l~~----------~~-~~~~~l~~~~~~ 339 (492)
+|++++|.+++...... .......+......+++|++|++++ +. .....+ +....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~-~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL-IALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH-HHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH-HHHHh
Confidence 55555554311000000 0001122222223345555555552 22 211111 22223
Q ss_pred ccccccEEEEecccCCCcCCC-CC-CCCccceeeccc---cccceeeccc--ccCCcCCCCCCcccccccccceeccCcc
Q 011151 340 SLTNLRALLLKNCRNCEHLPP-LG-KLPSLESLYIEG---MQSVKRVGNE--FLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 340 ~l~~L~~L~L~~~~~~~~~~~-l~-~l~~L~~L~l~~---~~~l~~~~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
.+++|++|+++.+.+...... +. .+++|++|++++ |..++..+.. +. .....+++|+.|++++|.
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~--------~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR--------SLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH--------HHHHHCTTCCEEEEECCG
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH--------HHHHhCCCCCEEEEecCC
Confidence 455555555544433222111 22 255666666653 2222221100 00 002257788888887665
Q ss_pred c-ccccccCccccccccCCCCcceEeecCCCCcc-cCCcccCCCCCCCeEEEeCCC
Q 011151 413 E-LEEWDFGTAIKGEIIIMPRLSFLEISGCCKLK-ALPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 413 ~-l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~c~ 466 (492)
+ +.+..+. .....+++|+.|++++|.... .++..+..+++|++|++++|+
T Consensus 448 ~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 448 GGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp GGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCccHHHHH----HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 3 2222111 112258999999999875322 355556789999999999998
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=9.6e-22 Score=189.36 Aligned_cols=261 Identities=16% Similarity=0.172 Sum_probs=201.9
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
++++.++++++.+..++. .+. ++++|+.|++++|. +.+..+..|..+++|++|+++ ++.+..+|.
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~----~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQ----RCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDLS-------YNYLSNLSS 117 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCSSCCH
T ss_pred ccCcEEECCCCcCcccCHHHhc----cCCCCCEEECCCCc---cCccCHhhcCCCCCCCEEECC-------CCcCCcCCH
Confidence 589999999999987655 344 89999999999998 777677889999999999999 999999987
Q ss_pred h-hhccCcCCEEEccCCCCccccch--hhhcCCCCCeeecCcccccccc-cccccCCCCCcEEecCCCcccccccccccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLREL-PQGIGKLRKLMYLDNDDTWFLRYLPVGIGE 223 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 223 (492)
. +.++++|++|++++|. +..+|. .+.++++|++|++++|..+..+ +..+.++++|++|++++|.+....|..+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 6 8899999999999999 788886 6889999999999999545555 567899999999999999987777889999
Q ss_pred cccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhh
Q 011151 224 LINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRR 303 (492)
Q Consensus 224 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 303 (492)
+++|++|++..+.... ........++.|+.+.+....-.... ..........+.++.+++..+.+.+.
T Consensus 197 l~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~~~~l~~l~L~~~~l~~~-------- 264 (353)
T 2z80_A 197 IQNVSHLILHMKQHIL---LLEIFVDVTSSVECLELRDTDLDTFH-FSELSTGETNSLIKKFTFRNVKITDE-------- 264 (353)
T ss_dssp CSEEEEEEEECSCSTT---HHHHHHHHTTTEEEEEEESCBCTTCC-CC------CCCCCCEEEEESCBCCHH--------
T ss_pred cccCCeecCCCCcccc---chhhhhhhcccccEEECCCCcccccc-ccccccccccchhhccccccccccCc--------
Confidence 9999999999886542 01111234566666666554221110 01112234567788888888875421
Q ss_pred hHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcC
Q 011151 304 ESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHL 358 (492)
Q Consensus 304 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~ 358 (492)
....++..+..+++|++|++++|.+.. +|+..+..+++|++|++++|.+..+.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCc--cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 234567778889999999999999987 84444689999999999999766543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=6.4e-21 Score=189.87 Aligned_cols=241 Identities=20% Similarity=0.202 Sum_probs=183.3
Q ss_pred eEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chh
Q 011151 71 ILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNI 149 (492)
Q Consensus 71 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~ 149 (492)
.+.+...+..+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..++ ..+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~ 119 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP------SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLG-------RNSIRQIEVGAF 119 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTT
T ss_pred CcEEEECCCCcCccCCCCC------CCccEEECcCCc---CceECHHHcCCCCCCCEEECC-------CCccCCcChhhc
Confidence 3467777777877777654 789999999998 777678889999999999999 88888876 568
Q ss_pred hccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccccccc-ccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPV-GIGELIN 226 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~ 226 (492)
.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+| ..+.++++|++|++++|...+.++. .+..+++
T Consensus 120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 899999999999999 7777654 7789999999999998 55554 4678899999999998766555554 4677788
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|+++.+.... +. .+..+++|+.|++++|.+++
T Consensus 198 L~~L~L~~n~l~~-----~~----------------------------~~~~l~~L~~L~Ls~N~l~~------------ 232 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-----MP----------------------------NLTPLVGLEELEMSGNHFPE------------ 232 (452)
T ss_dssp CCEEECTTSCCSS-----CC----------------------------CCTTCTTCCEEECTTSCCSE------------
T ss_pred CCEEECCCCcccc-----cc----------------------------cccccccccEEECcCCcCcc------------
Confidence 8888776554331 01 13355678888888887542
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
..+..+..+++|++|++++|.+.. +++..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccccCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 234556777888888888888776 5567778888888888888876654444 6778888888888876
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=6.5e-21 Score=189.17 Aligned_cols=241 Identities=20% Similarity=0.211 Sum_probs=181.6
Q ss_pred eEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chh
Q 011151 71 ILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNI 149 (492)
Q Consensus 71 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~ 149 (492)
.+.+...+..+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..++ ..+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~i~~~~~ 108 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS------TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLS-------RNHIRTIEIGAF 108 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC------TTCSEEECCSCC---CCEECTTTTSSCSSCCEEECC-------SSCCCEECGGGG
T ss_pred CCEEEeCCCCcCcCCCCCC------CCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECC-------CCcCCccChhhc
Confidence 3467777777888887654 788999999998 777667778999999999999 88888876 568
Q ss_pred hccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccccccc-ccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPV-GIGELIN 226 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~ 226 (492)
.++++|++|++++|. ++.+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|.....++. .+..+++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 109 NGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp TTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred cCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 889999999999998 777765 57889999999999998 55544 4678899999999998765555554 4677788
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+.... + + .+..+++|+.|++++|.+++.
T Consensus 187 L~~L~L~~n~l~~-----~--------------------~--------~~~~l~~L~~L~Ls~N~l~~~----------- 222 (440)
T 3zyj_A 187 LRYLNLAMCNLRE-----I--------------------P--------NLTPLIKLDELDLSGNHLSAI----------- 222 (440)
T ss_dssp CCEEECTTSCCSS-----C--------------------C--------CCTTCSSCCEEECTTSCCCEE-----------
T ss_pred cCeecCCCCcCcc-----c--------------------c--------ccCCCcccCEEECCCCccCcc-----------
Confidence 8888776554321 0 1 134556788888888875422
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
.+..+..+++|++|++++|.+.. +++..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 223 -~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 -RPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CTTTTTTCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -ChhhhccCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 24456677888888888888777 6566777888888888888877655444 6778888888888776
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=9.6e-22 Score=186.24 Aligned_cols=245 Identities=13% Similarity=0.090 Sum_probs=158.2
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.+++|+.|++++|. +....|..|..+++|++|+++ ++.+...+. +..+++|++|++++|. ++.++
T Consensus 32 ~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~--- 96 (317)
T 3o53_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-------SNVLYETLD-LESLSTLRTLDLNNNY-VQELL--- 96 (317)
T ss_dssp TGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECT-------TSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE---
T ss_pred cCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECC-------CCcCCcchh-hhhcCCCCEEECcCCc-ccccc---
Confidence 56677788887776 666556667777778888887 677666554 6777778888887777 66554
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
..++|++|++++|. +..++. ..+++|++|++++|.+....+..+..+++|+.|+++.+.... .
T Consensus 97 -~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~----- 159 (317)
T 3o53_A 97 -VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------V----- 159 (317)
T ss_dssp -ECTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--------E-----
T ss_pred -CCCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--------c-----
Confidence 24677777777777 444432 236677777777777655555556666667666665543221 0
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
. .......+++|+.|++++|.+++. .....+++|++|++++|.+.. +
T Consensus 160 ------------~-----~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~--l 206 (317)
T 3o53_A 160 ------------N-----FAELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAF--M 206 (317)
T ss_dssp ------------E-----GGGGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCE--E
T ss_pred ------------c-----HHHHhhccCcCCEEECCCCcCccc--------------ccccccccCCEEECCCCcCCc--c
Confidence 0 001123567788888888875422 223347788888888888777 6
Q ss_pred CchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccc-eeecccccCCcCCCCCCcccccccccceeccCcc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSV-KRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
+..+..+++|+.|++++|.+....+.+..+++|+.|++++|... ..++. + ...+++|+.|.+.++.
T Consensus 207 -~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~-----------~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 207 -GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-F-----------FSKNQRVQTVAKQTVK 273 (317)
T ss_dssp -CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH-H-----------HHTCHHHHHHHHHHHH
T ss_pred -hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH-H-----------HhccccceEEECCCch
Confidence 55577888888888888876644344777788888888887733 11111 1 1256677777766655
Q ss_pred cccc
Q 011151 413 ELEE 416 (492)
Q Consensus 413 ~l~~ 416 (492)
.++.
T Consensus 274 ~l~~ 277 (317)
T 3o53_A 274 KLTG 277 (317)
T ss_dssp HHHS
T ss_pred hccC
Confidence 5444
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=4.4e-20 Score=188.83 Aligned_cols=258 Identities=19% Similarity=0.179 Sum_probs=157.6
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++.++++++.+..+|..+. ++|+.|++++|. +.. +|. .+++|++|+++ +|.+..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~------~~L~~L~L~~N~---l~~-lp~---~l~~L~~L~Ls-------~N~l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP------AHITTLVIPDNN---LTS-LPA---LPPELRTLEVS-------GNQLTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC------TTCSEEEECSCC---CSC-CCC---CCTTCCEEEEC-------SCCCSCCCC-
T ss_pred CCCcEEEecCCCcCccChhhC------CCCcEEEecCCC---CCC-CCC---cCCCCCEEEcC-------CCcCCcCCC-
Confidence 357788888888887776553 688888888887 554 444 46778888888 777887776
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
.+++|++|++++|. +..+|. .+++|+.|++++|. +..+|.. +++|++|++++|.+. .+|.. .++|+
T Consensus 99 --~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELC 164 (622)
T ss_dssp --CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCC
T ss_pred --CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCC
Confidence 66788888888888 777776 56788888888887 6666653 477888888888653 33321 23444
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|.+..+.... ++ ..+++|+.|++++|.+++.+
T Consensus 165 ~L~L~~N~l~~-------------------------l~----------~~~~~L~~L~Ls~N~l~~l~------------ 197 (622)
T 3g06_A 165 KLWAYNNQLTS-------------------------LP----------MLPSGLQELSVSDNQLASLP------------ 197 (622)
T ss_dssp EEECCSSCCSC-------------------------CC----------CCCTTCCEEECCSSCCSCCC------------
T ss_pred EEECCCCCCCC-------------------------Cc----------ccCCCCcEEECCCCCCCCCC------------
Confidence 44443322111 00 12346677777777654221
Q ss_pred hhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCC
Q 011151 309 LEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGV 388 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 388 (492)
..+++|+.|++++|.+.. + |. .+++|+.|++++|.+.. +| ..+++|+.|++++|. ++.++.
T Consensus 198 ----~~~~~L~~L~L~~N~l~~--l-~~---~~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~-L~~lp~----- 258 (622)
T 3g06_A 198 ----TLPSELYKLWAYNNRLTS--L-PA---LPSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNR-LTSLPM----- 258 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSS--C-CC---CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSC-CSCCCC-----
T ss_pred ----CccchhhEEECcCCcccc--c-CC---CCCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCC-CCcCCc-----
Confidence 123566777777666665 5 32 24666667776664443 33 334566666666664 333221
Q ss_pred cCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCc
Q 011151 389 ESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444 (492)
Q Consensus 389 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 444 (492)
.+++|+.|++++|. ++ .+|..+..+++|+.|+|++|+..
T Consensus 259 ----------~~~~L~~L~Ls~N~-L~------~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 ----------LPSGLLSLSVYRNQ-LT------RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ----------CCTTCCEEECCSSC-CC------SCCGGGGGSCTTCEEECCSCCCC
T ss_pred ----------ccccCcEEeCCCCC-CC------cCCHHHhhccccCEEEecCCCCC
Confidence 34556666666542 32 23344556666666666665443
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=7.6e-21 Score=179.29 Aligned_cols=243 Identities=17% Similarity=0.142 Sum_probs=168.8
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCCCcccc---chhhh
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKL---PETLC 174 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~l---p~~~~ 174 (492)
+.++++++. ++. +|..+ .++|++|+++ ++.+..+|.. +.++++|++|++++|. +..+ |..+.
T Consensus 10 ~~l~c~~~~---l~~-ip~~~--~~~l~~L~L~-------~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 75 (306)
T 2z66_A 10 TEIRCNSKG---LTS-VPTGI--PSSATRLELE-------SNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF 75 (306)
T ss_dssp TEEECCSSC---CSS-CCSCC--CTTCCEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHH
T ss_pred CEEEcCCCC---ccc-CCCCC--CCCCCEEECC-------CCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccc
Confidence 356666655 544 44322 3578999999 8888888865 6889999999999998 5544 56777
Q ss_pred cCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccc-ccccccccccccceEEeecccCCCcCccccccccc
Q 011151 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
.+++|++|++++|. +..+|..+..+++|++|++++|.+....+ ..+..+++|+.|++..+.....
T Consensus 76 ~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------- 141 (306)
T 2z66_A 76 GTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA------------- 141 (306)
T ss_dssp SCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-------------
T ss_pred cccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-------------
Confidence 88999999999998 66778778889999999999987644333 3566677777776654432210
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
.+ ..+..+++|+.|++++|.+++ ...+..+..+++|++|++++|.+.. +
T Consensus 142 -----------~~-------~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~--~ 190 (306)
T 2z66_A 142 -----------FN-------GIFNGLSSLEVLKMAGNSFQE-----------NFLPDIFTELRNLTFLDLSQCQLEQ--L 190 (306)
T ss_dssp -----------ST-------TTTTTCTTCCEEECTTCEEGG-----------GEECSCCTTCTTCCEEECTTSCCCE--E
T ss_pred -----------ch-------hhcccCcCCCEEECCCCcccc-----------ccchhHHhhCcCCCEEECCCCCcCC--c
Confidence 00 235567788888888887421 1245566778888888888888776 5
Q ss_pred CchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccc-cccceeccCc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFP-KLKHLKFYDM 411 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 411 (492)
++.++..+++|+.|++++|.+....+. +..+++|++|++++|. +.......+ ..+| +|+.|+++++
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----------~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL-----------QHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSC-----------CCCCTTCCEEECTTC
T ss_pred CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCHHHH-----------HhhhccCCEEEccCC
Confidence 567778888888888888876655443 6778888888888886 332222111 1443 7777777775
Q ss_pred c
Q 011151 412 E 412 (492)
Q Consensus 412 ~ 412 (492)
+
T Consensus 259 ~ 259 (306)
T 2z66_A 259 D 259 (306)
T ss_dssp C
T ss_pred C
Confidence 4
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=3.1e-20 Score=184.95 Aligned_cols=242 Identities=20% Similarity=0.191 Sum_probs=181.7
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccc-hhhhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLP-ETLCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~ 175 (492)
.+.++..+.. +.. +|..+ .+++++|+|+ ++.+..++ ..+.++++|++|++++|. +..++ ..+.+
T Consensus 56 ~~~v~c~~~~---l~~-iP~~~--~~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~ 121 (452)
T 3zyi_A 56 FSKVVCTRRG---LSE-VPQGI--PSNTRYLNLM-------ENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNG 121 (452)
T ss_dssp SCEEECCSSC---CSS-CCSCC--CTTCSEEECC-------SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred CcEEEECCCC---cCc-cCCCC--CCCccEEECc-------CCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccC
Confidence 4566666665 554 44423 2578889998 78887764 568888999999999998 55554 56888
Q ss_pred CCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 176 LYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.|++..+....
T Consensus 122 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------- 185 (452)
T 3zyi_A 122 LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE--------------- 185 (452)
T ss_dssp CTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC---------------
T ss_pred cccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc---------------
Confidence 8999999999988 555544 47788899999999987755444567777778777665432111
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
.++. ..+.++++|+.|++++|.+++. ..+..+++|++|++++|.+.. ++
T Consensus 186 ---------~i~~------~~~~~l~~L~~L~L~~n~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~--~~ 234 (452)
T 3zyi_A 186 ---------YISE------GAFEGLFNLKYLNLGMCNIKDM--------------PNLTPLVGLEELEMSGNHFPE--IR 234 (452)
T ss_dssp ---------EECT------TTTTTCTTCCEEECTTSCCSSC--------------CCCTTCTTCCEEECTTSCCSE--EC
T ss_pred ---------ccCh------hhccCCCCCCEEECCCCccccc--------------ccccccccccEEECcCCcCcc--cC
Confidence 0011 2366788999999999997543 246778999999999999988 66
Q ss_pred chhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
+..+..+++|+.|++++|.+....+. +..+++|+.|+|++|. ++.++...+. .+++|+.|++++++
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-----------~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFT-----------PLRYLVELHLHHNP 301 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSST-----------TCTTCCEEECCSSC
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhc-----------cccCCCEEEccCCC
Confidence 88899999999999999988776555 8889999999999997 5555544433 68899999998865
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=182.94 Aligned_cols=242 Identities=20% Similarity=0.218 Sum_probs=183.4
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccc-hhhhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLP-ETLCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~ 175 (492)
.+.++..+.. +.. +|..+. ++++.|+|+ ++.+..++ ..+.++++|++|++++|. +..++ ..+.+
T Consensus 45 ~~~v~c~~~~---l~~-iP~~~~--~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~ 110 (440)
T 3zyj_A 45 FSKVICVRKN---LRE-VPDGIS--TNTRLLNLH-------ENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG 110 (440)
T ss_dssp SCEEECCSCC---CSS-CCSCCC--TTCSEEECC-------SCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTT
T ss_pred CCEEEeCCCC---cCc-CCCCCC--CCCcEEEcc-------CCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccC
Confidence 4566666665 555 554332 678889999 88888776 568889999999999998 66554 56888
Q ss_pred CCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 176 LYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.|++..+....
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~--------------- 174 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS--------------- 174 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC---------------
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc---------------
Confidence 9999999999988 555554 57888999999999987755555567777788877765432111
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
.++. ..+.++++|+.|++++|.++..+ .+..+++|++|++++|.+.. ++
T Consensus 175 ---------~i~~------~~~~~l~~L~~L~L~~n~l~~~~--------------~~~~l~~L~~L~Ls~N~l~~--~~ 223 (440)
T 3zyj_A 175 ---------YISE------GAFEGLSNLRYLNLAMCNLREIP--------------NLTPLIKLDELDLSGNHLSA--IR 223 (440)
T ss_dssp ---------EECT------TTTTTCSSCCEEECTTSCCSSCC--------------CCTTCSSCCEEECTTSCCCE--EC
T ss_pred ---------eeCc------chhhcccccCeecCCCCcCcccc--------------ccCCCcccCEEECCCCccCc--cC
Confidence 0011 23667889999999999975332 36778999999999999887 66
Q ss_pred chhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
+..+..+++|+.|++++|.+....+. +..+++|++|+|++|. ++.++...+. .+++|+.|++++++
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-----------~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFT-----------PLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTS-----------SCTTCCEEECCSSC
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhc-----------cccCCCEEEcCCCC
Confidence 88899999999999999988776555 8899999999999997 5555544433 68899999998866
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=9e-20 Score=186.53 Aligned_cols=258 Identities=21% Similarity=0.193 Sum_probs=187.3
Q ss_pred CCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhc
Q 011151 96 RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCE 175 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~ 175 (492)
.+++.|+++++. +.. +|..+. ++|++|+++ ++.+..+|. .+++|++|++++|. ++.+|. .
T Consensus 40 ~~l~~L~ls~n~---L~~-lp~~l~--~~L~~L~L~-------~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESG---LTT-LPDCLP--AHITTLVIP-------DNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSC---CSC-CCSCCC--TTCSEEEEC-------SCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---C
T ss_pred CCCcEEEecCCC---cCc-cChhhC--CCCcEEEec-------CCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---C
Confidence 458889998887 554 554343 789999999 888888887 56889999999998 778876 6
Q ss_pred CCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccC
Q 011151 176 LYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLR 255 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 255 (492)
+++|++|++++|. +..+|. .+++|+.|++++|.+. .+|.. +++|+.|+++.+....
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~---------------- 155 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS---------------- 155 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC----------------
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC----------------
Confidence 7889999999988 666766 5688999999988763 45543 3667777666543221
Q ss_pred CceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCc
Q 011151 256 ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPR 335 (492)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~ 335 (492)
++ ...++|+.|++++|.++.. + ..+++|+.|++++|.+.. + |
T Consensus 156 ---------l~----------~~~~~L~~L~L~~N~l~~l-------------~---~~~~~L~~L~Ls~N~l~~--l-~ 197 (622)
T 3g06_A 156 ---------LP----------ALPSELCKLWAYNNQLTSL-------------P---MLPSGLQELSVSDNQLAS--L-P 197 (622)
T ss_dssp ---------CC----------CCCTTCCEEECCSSCCSCC-------------C---CCCTTCCEEECCSSCCSC--C-C
T ss_pred ---------cC----------CccCCCCEEECCCCCCCCC-------------c---ccCCCCcEEECCCCCCCC--C-C
Confidence 00 0124678888888886432 1 346789999999988877 6 4
Q ss_pred hhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCccccc
Q 011151 336 NWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELE 415 (492)
Q Consensus 336 ~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 415 (492)
. .+++|+.|++++|.+.. ++. .+++|+.|++++|. ++.++ . .+++|+.|+++++. ++
T Consensus 198 ~---~~~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~-L~~lp----~-----------~l~~L~~L~Ls~N~-L~ 254 (622)
T 3g06_A 198 T---LPSELYKLWAYNNRLTS-LPA--LPSGLKELIVSGNR-LTSLP----V-----------LPSELKELMVSGNR-LT 254 (622)
T ss_dssp C---CCTTCCEEECCSSCCSS-CCC--CCTTCCEEECCSSC-CSCCC----C-----------CCTTCCEEECCSSC-CS
T ss_pred C---ccchhhEEECcCCcccc-cCC--CCCCCCEEEccCCc-cCcCC----C-----------CCCcCcEEECCCCC-CC
Confidence 3 35789999999886553 443 25789999998886 44433 1 56789999988873 54
Q ss_pred ccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCch
Q 011151 416 EWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPIL 468 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 468 (492)
.+ |. .+++|+.|++++| .++.+|..+.++++|+.|++++|+.-
T Consensus 255 ~l------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 255 SL------PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CC------CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred cC------Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 32 22 5788999999885 66788888888999999999998853
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.5e-21 Score=201.60 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=72.5
Q ss_pred CCCccEEEEeecCCCccccCchhhhccccccEEEEe-----cccCCCcCCC-------CCCCCccceeeccccccceeec
Q 011151 315 PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLK-----NCRNCEHLPP-------LGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~-----~~~~~~~~~~-------l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
+++|++|.+.++.+....+ ......+++|+.|+++ +|...+..+. +..+++|++|++++ .+...+
T Consensus 371 ~~~L~~L~~~~~~l~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~ 447 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAAL-ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV 447 (594)
T ss_dssp CTTCCEEEEEESCCCHHHH-HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH
T ss_pred chhHHHHHHhcCCcCHHHH-HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH
Confidence 4556666555444433211 1112246666666666 2223332211 23455666666654 122211
Q ss_pred ccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCccc-CCcccCCCCCCCeEE
Q 011151 383 NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA-LPDLLLQKTTLQKLL 461 (492)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~ 461 (492)
....+ ..+++|+.|++++|. +++..+ +.....+++|++|+|++|+.... +...+..+++|++|+
T Consensus 448 ~~~l~----------~~~~~L~~L~L~~~~-i~~~~~----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 448 FEYIG----------TYAKKMEMLSVAFAG-DSDLGM----HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp HHHHH----------HHCTTCCEEEEESCC-SSHHHH----HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred HHHHH----------HhchhccEeeccCCC-CcHHHH----HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 11111 036778888887765 322211 11124689999999999876222 223445688999999
Q ss_pred EeCCCch
Q 011151 462 IGRCPIL 468 (492)
Q Consensus 462 l~~c~~l 468 (492)
+++|+.-
T Consensus 513 l~~~~~~ 519 (594)
T 2p1m_B 513 MSSCSVS 519 (594)
T ss_dssp EESSCCB
T ss_pred eeCCCCC
Confidence 9999873
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=7.5e-22 Score=186.99 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=145.2
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccchhhhcC
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLPETLCEL 176 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 176 (492)
++..++..+. +.......+..+++|++|+++ ++.+..++ ..+.++++|++|++++|. +...++ +..+
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L~-------~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDLS-------GNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESL 79 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEECT-------TSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTC
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEECc-------CCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhc
Confidence 3444444444 444444555666677777777 67776665 457777777777777777 554443 6777
Q ss_pred CCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCC
Q 011151 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRE 256 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~ 256 (492)
++|++|++++|. +..++ ..++|++|++++|.+....+. .+++|+.|++..+....
T Consensus 80 ~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~----------------- 134 (317)
T 3o53_A 80 STLRTLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM----------------- 134 (317)
T ss_dssp TTCCEEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-----------------
T ss_pred CCCCEEECcCCc-ccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-----------------
Confidence 777777777776 44443 236777777777765433222 23445555444332221
Q ss_pred ceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhc-CCCCCccEEEEeecCCCccccCc
Q 011151 257 CSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL-GPPPNLKELVIDEYRGRRNVVPR 335 (492)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~l~~ 335 (492)
.+ ...+..+++|+.|++++|.+++.. +..+ ..+++|++|++++|.+.. + +
T Consensus 135 --------~~------~~~~~~l~~L~~L~Ls~N~l~~~~------------~~~~~~~l~~L~~L~L~~N~l~~--~-~ 185 (317)
T 3o53_A 135 --------LR------DLDEGCRSRVQYLDLKLNEIDTVN------------FAELAASSDTLEHLNLQYNFIYD--V-K 185 (317)
T ss_dssp --------GG------GBCTGGGSSEEEEECTTSCCCEEE------------GGGGGGGTTTCCEEECTTSCCCE--E-E
T ss_pred --------cc------chhhhccCCCCEEECCCCCCCccc------------HHHHhhccCcCCEEECCCCcCcc--c-c
Confidence 00 012344566777777776643211 1122 235666666666666655 3 2
Q ss_pred hhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCccccc
Q 011151 336 NWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELE 415 (492)
Q Consensus 336 ~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 415 (492)
. ...+++|+.|++++|.+....+.+..+++|++|++++|. ++.++..+ ..+++|+.|++++++ +.
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~l~~N~-~~ 250 (317)
T 3o53_A 186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRGNG-FH 250 (317)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTTCC-CB
T ss_pred c-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEEccCCC-cc
Confidence 2 224666666666666555443445556666666666665 44443321 145666666666554 21
Q ss_pred ccccCccccccccCCCCcceEeecCCCCccc
Q 011151 416 EWDFGTAIKGEIIIMPRLSFLEISGCCKLKA 446 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 446 (492)
. +.+|.++..+++|+.|++.+|+.++.
T Consensus 251 ~----~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 251 C----GTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp H----HHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred C----cCHHHHHhccccceEEECCCchhccC
Confidence 0 12334455566666666665555443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=3.6e-20 Score=185.56 Aligned_cols=254 Identities=13% Similarity=0.082 Sum_probs=188.2
Q ss_pred cCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEE
Q 011151 80 RGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLS 159 (492)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ 159 (492)
....+|..+......+++|+.|++++|. +.+..|..|..+++|++|+|+ +|.+...++ +..+++|++|+
T Consensus 18 ~~~~l~~~l~~l~~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~-l~~l~~L~~L~ 86 (487)
T 3oja_A 18 TDSSLKQALASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-------SNVLYETLD-LESLSTLRTLD 86 (487)
T ss_dssp CTTTHHHHHHTTSTTGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECT-------TSCCEEEEE-CTTCTTCCEEE
T ss_pred chhhhHHHHHHhcccCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEee-------CCCCCCCcc-cccCCCCCEEE
Confidence 3333555555444456689999999998 777677788999999999999 888876655 88899999999
Q ss_pred ccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeeccc
Q 011151 160 LCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGY 239 (492)
Q Consensus 160 L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 239 (492)
+++|. ++.+|. .++|++|++++|. +..++. ..+++|++|++++|.+....|..+..+++|+.|+++.+....
T Consensus 87 Ls~N~-l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 87 LNNNY-VQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CCSSE-EEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred ecCCc-CCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 99998 776664 4889999999998 454443 357889999999998877777778888888888877654332
Q ss_pred CCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCcc
Q 011151 240 DRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLK 319 (492)
Q Consensus 240 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 319 (492)
. .+. .....+++|+.|++++|.+++. .....+++|+
T Consensus 159 ~---~~~---------------------------~l~~~l~~L~~L~Ls~N~l~~~--------------~~~~~l~~L~ 194 (487)
T 3oja_A 159 V---NFA---------------------------ELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLK 194 (487)
T ss_dssp E---EGG---------------------------GGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCC
T ss_pred c---ChH---------------------------HHhhhCCcccEEecCCCccccc--------------cccccCCCCC
Confidence 0 000 1123567899999999986432 2344688999
Q ss_pred EEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccc-eeecccccCCcCCCCCCccc
Q 011151 320 ELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSV-KRVGNEFLGVESDTDGSSII 398 (492)
Q Consensus 320 ~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~ 398 (492)
.|++++|.+.. + |..+..+++|+.|++++|.+.+..+.+..+++|+.|++++|... ..++. + +.
T Consensus 195 ~L~Ls~N~l~~--~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~-~-----------~~ 259 (487)
T 3oja_A 195 TLDLSSNKLAF--M-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-F-----------FS 259 (487)
T ss_dssp EEECCSSCCCE--E-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH-H-----------HT
T ss_pred EEECCCCCCCC--C-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH-H-----------HH
Confidence 99999999887 7 55688999999999999988765455888999999999998843 12221 1 12
Q ss_pred ccccccceeccCc
Q 011151 399 AFPKLKHLKFYDM 411 (492)
Q Consensus 399 ~l~~L~~L~l~~~ 411 (492)
.++.|+.+.+..+
T Consensus 260 ~l~~L~~l~~~~~ 272 (487)
T 3oja_A 260 KNQRVQTVAKQTV 272 (487)
T ss_dssp TCHHHHHHHHHHH
T ss_pred hCCCCcEEecccc
Confidence 5677777776543
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1e-20 Score=178.81 Aligned_cols=205 Identities=16% Similarity=0.083 Sum_probs=129.7
Q ss_pred hccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCcc--ccchhhh-------cCCCCCeeecCcccc
Q 011151 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIE--KLPETLC-------ELYNLERLNITSCNH 189 (492)
Q Consensus 119 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~--~lp~~~~-------~l~~L~~L~l~~~~~ 189 (492)
++..++|+.|+++ ++.+ .+|..+... |++|++++|. +. .+|..+. ++++|++|++++|.+
T Consensus 39 ~~~~~~L~~l~l~-------~n~l-~~p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 39 YGGGRSLEYLLKR-------VDTE-ADLGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEV 107 (312)
T ss_dssp EEEEEECTTHHHH-------CCTT-CCCHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC
T ss_pred EccCCCceeEeec-------cccc-ccHHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc
Confidence 3445667777777 6666 666655543 7777777776 43 4555444 577788888887775
Q ss_pred cccccccc--cCCCCCcEEecCCCccccccccccccc-----ccccccceEEeecccCCCcCccccccccccCCceEecC
Q 011151 190 LRELPQGI--GKLRKLMYLDNDDTWFLRYLPVGIGEL-----INLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGL 262 (492)
Q Consensus 190 ~~~lp~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~ 262 (492)
...+|..+ ..+++|++|++++|.+... |..+..+ ++|+.|+++.+....
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~----------------------- 163 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN----------------------- 163 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-----------------------
T ss_pred cchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-----------------------
Confidence 55667665 6777788888877766544 5555555 666666666553321
Q ss_pred CCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhc--CCCCCccEEEEeecCCCcc-ccCchhhh
Q 011151 263 GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL--GPPPNLKELVIDEYRGRRN-VVPRNWVM 339 (492)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~-~l~~~~~~ 339 (492)
.+. ..+..+++|+.|++++|.+. .....+..+ ..+++|++|++++|.+..- .++...+.
T Consensus 164 --~~~------~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 164 --FSC------EQVRVFPALSTLDLSDNPEL----------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp --CCT------TTCCCCSSCCEEECCSCTTC----------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred --chH------HHhccCCCCCEEECCCCCcC----------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 010 23456677888888888742 112234444 6778888888888887640 02112334
Q ss_pred ccccccEEEEecccCCCcCC--CCCCCCccceeeccccc
Q 011151 340 SLTNLRALLLKNCRNCEHLP--PLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 340 ~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~ 376 (492)
.+++|+.|++++|.+.+..+ .+..+++|++|++++|.
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 67888888888887766553 25567778888887775
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=9e-21 Score=179.12 Aligned_cols=84 Identities=23% Similarity=0.190 Sum_probs=38.6
Q ss_pred cCCeeeEEecchhhhhhcccccc-ccCchh--hccCcCCEEEccCCCCccccchhhhcC-----CCCCeeecCccccccc
Q 011151 121 KLTCLRALKLEVRQRWLCKNFIK-KIPTNI--EKLLHLKYLSLCGQREIEKLPETLCEL-----YNLERLNITSCNHLRE 192 (492)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~-~l~~~~--~~l~~L~~L~L~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~ 192 (492)
.+++|++|+++ ++.+. .+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|.+...
T Consensus 93 ~l~~L~~L~L~-------~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 93 GISGLQELTLE-------NLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp TTSCCCEEEEE-------EEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred CcCCccEEEcc-------CCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 34455555555 44443 334333 445555555555555 33334444443 4555555555542222
Q ss_pred ccccccCCCCCcEEecCCCc
Q 011151 193 LPQGIGKLRKLMYLDNDDTW 212 (492)
Q Consensus 193 lp~~~~~l~~L~~L~l~~~~ 212 (492)
.|..++.+++|++|++++|.
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCT
T ss_pred hHHHhccCCCCCEEECCCCC
Confidence 22444455555555555544
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=4.7e-20 Score=184.74 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=41.9
Q ss_pred eeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCC
Q 011151 124 CLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRK 202 (492)
Q Consensus 124 ~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 202 (492)
+|++|+|+ ++.+..++ ..+.++++|++|++++|. +...++ +..+++|++|++++|. +..+|. .++
T Consensus 35 ~L~~L~Ls-------~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~ 100 (487)
T 3oja_A 35 NVKELDLS-------GNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPS 100 (487)
T ss_dssp GCCEEECC-------SSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTT
T ss_pred CccEEEee-------CCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCC
Confidence 56666666 55555543 345566666666666666 433332 5556666666666665 333332 255
Q ss_pred CcEEecCCCcc
Q 011151 203 LMYLDNDDTWF 213 (492)
Q Consensus 203 L~~L~l~~~~~ 213 (492)
|++|++++|.+
T Consensus 101 L~~L~L~~N~l 111 (487)
T 3oja_A 101 IETLHAANNNI 111 (487)
T ss_dssp CCEEECCSSCC
T ss_pred cCEEECcCCcC
Confidence 66666666544
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.3e-19 Score=167.34 Aligned_cols=204 Identities=21% Similarity=0.211 Sum_probs=160.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccc-cccc-C
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNF-IKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l-~ 146 (492)
+++++++++++.+..++... +.++++|+.|++++|. +.+..+..|..+++|++|+++ ++. +..+ |
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~---~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAAS---FRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLS-------DNAQLRSVDP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECTTT---TTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SCTTCCCCCT
T ss_pred CCceEEEeeCCcCCccCHHH---cccCCCCCEEECCCCc---cceeCHhhcCCccCCCEEeCC-------CCCCccccCH
Confidence 68999999999998755432 2489999999999998 777668889999999999999 776 8777 5
Q ss_pred chhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 224 (492)
..+.++++|++|++++|. +..+ |..+.++++|++|++++|. +..++ ..++.+++|++|++++|.+....+..+..+
T Consensus 99 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 678999999999999999 5555 5668899999999999999 55554 458899999999999998865555568888
Q ss_pred ccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhh
Q 011151 225 INLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRE 304 (492)
Q Consensus 225 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 304 (492)
++|+.|++..+..... . + ..+..+++|+.|++++|.+++..
T Consensus 177 ~~L~~L~l~~n~l~~~---~---------------------~-------~~~~~l~~L~~L~l~~n~l~~~~-------- 217 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHV---H---------------------P-------HAFRDLGRLMTLYLFANNLSALP-------- 217 (285)
T ss_dssp TTCCEEECCSSCCCEE---C---------------------T-------TTTTTCTTCCEEECCSSCCSCCC--------
T ss_pred cccCEEECCCCccccc---C---------------------H-------hHccCcccccEeeCCCCcCCcCC--------
Confidence 9999988876643320 0 0 23456678888888888865432
Q ss_pred HHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 305 SERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
+..+..+++|++|++++|.+..
T Consensus 218 ----~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 218 ----TEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ----HHHHTTCTTCCEEECCSSCEEC
T ss_pred ----HHHcccCcccCEEeccCCCccC
Confidence 2345677889999998888765
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=1e-20 Score=195.51 Aligned_cols=332 Identities=14% Similarity=0.062 Sum_probs=151.6
Q ss_pred CCCCceEEEeccCCccccccccchhhc-cCCeeeEEecchhhhhhccc-cccc--cCchhhccCcCCEEEccCCCCccc-
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFD-KLTCLRALKLEVRQRWLCKN-FIKK--IPTNIEKLLHLKYLSLCGQREIEK- 168 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~-~~~~--l~~~~~~l~~L~~L~L~~~~~~~~- 168 (492)
.+++|+.|++++|. +.+..+..+. .+++|++|+++ ++ .+.. ++..+.++++|++|++++|. ++.
T Consensus 103 ~~~~L~~L~L~~~~---~~~~~~~~l~~~~~~L~~L~L~-------~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~ 171 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV---VTDDCLELIAKSFKNFKVLVLS-------SCEGFSTDGLAAIAATCRNLKELDLRESD-VDDV 171 (594)
T ss_dssp HCTTCCEEEEESCB---CCHHHHHHHHHHCTTCCEEEEE-------SCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECC
T ss_pred hCCCCCeEEeeCcE---EcHHHHHHHHHhCCCCcEEeCC-------CcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCc
Confidence 45666677776665 4443333342 56666777666 33 3332 33334466667777776666 332
Q ss_pred ----cchhhhcCCCCCeeecCccc-cc--ccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeeccc--
Q 011151 169 ----LPETLCELYNLERLNITSCN-HL--RELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGY-- 239 (492)
Q Consensus 169 ----lp~~~~~l~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-- 239 (492)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|.....++..+..+++|++|.+..+....
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 11112245566666666664 01 1122223345666666666663333345555555666666543221100
Q ss_pred -CCCcCccccc------------------------cccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCC
Q 011151 240 -DRARSLGSLK------------------------KLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRD 294 (492)
Q Consensus 240 -~~~~~~~~l~------------------------~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 294 (492)
........+. .+++|+.+.+..+. +.. ......+..+++|+.|++.++.
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~--~~l~~~~~~~~~L~~L~l~~~~--- 325 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQS--YDLVKLLCQCPKLQRLWVLDYI--- 325 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCH--HHHHHHHTTCTTCCEEEEEGGG---
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCH--HHHHHHHhcCCCcCEEeCcCcc---
Confidence 0000001112 23344444444333 111 1122223445555555555442
Q ss_pred CchhhHhhhhHHHHhhhcCCCCCccEEEEeec---------CCCccccCchhhhccccccEEEEecccCCCcCC-CC-CC
Q 011151 295 GDEEQARRRESERLLEALGPPPNLKELVIDEY---------RGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP-PL-GK 363 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~-~l-~~ 363 (492)
....+......+++|++|++.++ ......+ ......+++|+.|.+..+.+..... .+ ..
T Consensus 326 ---------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l-~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 326 ---------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL-VSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp ---------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-HHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH-HHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 11222222223455555555331 1111001 1111235555555444443322111 11 13
Q ss_pred CCccceeecc-----ccccceeecc--cccCCcCCCCCCcccccccccceeccCcccccccccCcccccccc-CCCCcce
Q 011151 364 LPSLESLYIE-----GMQSVKRVGN--EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEII-IMPRLSF 435 (492)
Q Consensus 364 l~~L~~L~l~-----~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~~L~~ 435 (492)
+++|+.|+++ +|..++..+. .+.. ....+++|+.|++++ .+.+..+ ..+. .+++|+.
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~--------l~~~~~~L~~L~L~~--~l~~~~~-----~~l~~~~~~L~~ 460 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA--------IVEHCKDLRRLSLSG--LLTDKVF-----EYIGTYAKKMEM 460 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHH--------HHHHCTTCCEEECCS--SCCHHHH-----HHHHHHCTTCCE
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHH--------HHhhCCCccEEeecC--cccHHHH-----HHHHHhchhccE
Confidence 5666666666 3333332110 0000 012556777777654 2332221 1222 3788999
Q ss_pred EeecCCCCccc-CCcccCCCCCCCeEEEeCCCc
Q 011151 436 LEISGCCKLKA-LPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 436 L~l~~c~~l~~-l~~~l~~l~~L~~L~l~~c~~ 467 (492)
|++++|..... ++.....+++|++|++++|+.
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 99988763222 222225689999999999986
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=1.6e-18 Score=160.74 Aligned_cols=220 Identities=21% Similarity=0.165 Sum_probs=138.8
Q ss_pred eecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCC
Q 011151 78 LHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLK 156 (492)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~ 156 (492)
+..+..+|..+. +.|+.|++++|. +....+..|..+++|++|+++ ++.+..++. .+.++++|+
T Consensus 16 ~~~l~~ip~~l~------~~l~~L~ls~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~l~~L~ 79 (276)
T 2z62_A 16 ELNFYKIPDNLP------FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLSHLS 79 (276)
T ss_dssp TSCCSSCCSSSC------TTCCEEECTTCC---CCEECTTTTTTCTTCSEEECT-------TCCCCEECTTTTTTCTTCC
T ss_pred CCCccccCCCCC------CCccEEECCCCc---ccccCHhHhccccCCcEEECC-------CCcCCccCHHHccCCcCCC
Confidence 334444555443 568888888887 666555567888888888888 777777664 577888888
Q ss_pred EEEccCCCCccccc-hhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc-cccccccccccccccceEE
Q 011151 157 YLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR-YLPVGIGELINLRRVTKFV 234 (492)
Q Consensus 157 ~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 234 (492)
+|++++|. +..++ ..+.++++|++|++++|......+..++.+++|++|++++|.+.. .+|..+..+++|+.|+++.
T Consensus 80 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 80 TLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp EEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 88888888 55544 557788888888888887433333357788888888888887654 2566777777777777766
Q ss_pred eecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcc-eEecccccCCCCchhhHhhhhHHHHhhhcC
Q 011151 235 VGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLV-ELGLHFDRLRDGDEEQARRRESERLLEALG 313 (492)
Q Consensus 235 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~ 313 (492)
+..... ....+.. +..++.+. .+++++|.++. ++....
T Consensus 159 N~l~~~---~~~~~~~-------------------------l~~L~~l~l~L~ls~n~l~~-------------~~~~~~ 197 (276)
T 2z62_A 159 NKIQSI---YCTDLRV-------------------------LHQMPLLNLSLDLSLNPMNF-------------IQPGAF 197 (276)
T ss_dssp SCCCEE---CGGGGHH-------------------------HHTCTTCCEEEECCSSCCCE-------------ECTTSS
T ss_pred CCCCcC---CHHHhhh-------------------------hhhccccceeeecCCCcccc-------------cCcccc
Confidence 544320 0011111 11222222 56666666432 112222
Q ss_pred CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc
Q 011151 314 PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357 (492)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~ 357 (492)
...+|++|++++|.+.. +++..+..+++|+.|++++|.+..+
T Consensus 198 ~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 198 KEIRLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CSCCEEEEECCSSCCSC--CCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCCcccEEECCCCceee--cCHhHhcccccccEEEccCCccccc
Confidence 33467777777776665 5444556677777777777755443
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=4.3e-19 Score=169.61 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=57.9
Q ss_pred ceEEEeccCCccccccccchhhccC--CeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccc-cchhhh
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKL--TCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEK-LPETLC 174 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-lp~~~~ 174 (492)
++.++++++. +. +..+..+ +.++.|+++ ++.+...+..+.++++|++|++++|.+... +|..+.
T Consensus 49 ~~~l~l~~~~---~~---~~~~~~~~~~~l~~L~l~-------~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 49 WQTLDLTGKN---LH---PDVTGRLLSQGVIAFRCP-------RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp SSEEECTTCB---CC---HHHHHHHHHTTCSEEECT-------TCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred heeecccccc---CC---HHHHHhhhhccceEEEcC-------CccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 4556665554 22 2334444 556666666 555555544455666666666666662222 555566
Q ss_pred cCCCCCeeecCcccccccccccccCCCCCcEEecCCC
Q 011151 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 211 (492)
.+++|++|++++|......|..++.+++|++|++++|
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 6666666666666644455555666666666666666
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=7.4e-18 Score=156.25 Aligned_cols=204 Identities=17% Similarity=0.114 Sum_probs=113.5
Q ss_pred CeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCC
Q 011151 123 TCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKL 200 (492)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 200 (492)
++|++|+++ ++.+..++. .+.++++|++|++++|. +..++. .+.++++|++|++++|.+....+..+.++
T Consensus 28 ~~l~~L~ls-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLS-------FNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECT-------TCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECC-------CCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 457777777 777777664 57777777888887777 555543 56777777777777777433444557777
Q ss_pred CCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccC
Q 011151 201 RKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKK 280 (492)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 280 (492)
++|++|++++|.+....+..+..+++|+.|++..+.... . .++ ..+..++
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~---------------------~l~-------~~~~~l~ 149 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--F---------------------KLP-------EYFSNLT 149 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--C---------------------CCC-------GGGGGCT
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccce--e---------------------cCc-------hhhccCC
Confidence 777777777776644433345555666666555443221 0 001 2345556
Q ss_pred CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCcc-EEEEeecCCCccccCchhhhccccccEEEEecccCCCcCC
Q 011151 281 NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLK-ELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP 359 (492)
Q Consensus 281 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~ 359 (492)
+|+.|++++|.+++... .....+..++.|. +|++++|.+.. + +.......+|+.|++++|.+....+
T Consensus 150 ~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~l~l~L~ls~n~l~~--~-~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYC---------TDLRVLHQMPLLNLSLDLSLNPMNF--I-QPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp TCCEEECCSSCCCEECG---------GGGHHHHTCTTCCEEEECCSSCCCE--E-CTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred CCCEEECCCCCCCcCCH---------HHhhhhhhccccceeeecCCCcccc--c-CccccCCCcccEEECCCCceeecCH
Confidence 66666666666532211 0111112222222 56666665554 4 2222233356666666665443333
Q ss_pred C-CCCCCccceeeccccc
Q 011151 360 P-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 360 ~-l~~l~~L~~L~l~~~~ 376 (492)
. +..+++|++|++++|+
T Consensus 218 ~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTTTTCCSCCEEECCSSC
T ss_pred hHhcccccccEEEccCCc
Confidence 3 4556666666666554
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4.9e-17 Score=152.99 Aligned_cols=190 Identities=21% Similarity=0.281 Sum_probs=98.8
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.. ++. +..+++|++|+++ ++.+..++. +.++++|++|++++|. +..++ .+
T Consensus 39 ~l~~L~~L~l~~~~---i~~-l~~-~~~l~~L~~L~L~-------~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTG---VTT-IEG-VQYLNNLIGLELK-------DNQITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HcCCcCEEEeeCCC---ccC-chh-hhccCCCCEEEcc-------CCcCCCChh-HccCCCCCEEEccCCc-CCCch-hh
Confidence 44555555555554 333 222 4555555555555 555555544 5555555555555555 44443 35
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
..+++|++|++++|. +..++. +..+++|++|++++|.+... +. +
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l-------------------------------- 147 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNI-SP-L-------------------------------- 147 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCC-GG-G--------------------------------
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcC-cc-c--------------------------------
Confidence 555555555555555 333433 55555555555555533211 11 2
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
..+++|+.|++++|.+++.. .+..+++|++|++++|.+.. +
T Consensus 148 -----------------------~~l~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~--~ 188 (308)
T 1h6u_A 148 -----------------------AGLTNLQYLSIGNAQVSDLT--------------PLANLSKLTTLKADDNKISD--I 188 (308)
T ss_dssp -----------------------GGCTTCCEEECCSSCCCCCG--------------GGTTCTTCCEEECCSSCCCC--C
T ss_pred -----------------------cCCCCccEEEccCCcCCCCh--------------hhcCCCCCCEEECCCCccCc--C
Confidence 23345555555555543211 14455566666666665555 4
Q ss_pred CchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 376 (492)
+. +..+++|+.|++++|.+.+.. .+..+++|+.|++++|+
T Consensus 189 -~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 189 -SP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred -hh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 22 556666666666666544332 35566667777776665
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=6.8e-17 Score=149.15 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=51.2
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE 356 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~ 356 (492)
..+++|+.|++++|.++... ...+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+..
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLP------------KGVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCC------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CcCcCCCEEECCCCcCCccC------------HhHccCCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCCcCCc
Confidence 34455566666655543221 1224455666666666666665 544556677777777777776554
Q ss_pred cCCC-CCCCCccceeeccccc
Q 011151 357 HLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 357 ~~~~-l~~l~~L~~L~l~~~~ 376 (492)
..+. +..+++|+.|++++|+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHHHhccccCCCEEEecCCC
Confidence 4433 5667777777777765
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=5.7e-19 Score=172.12 Aligned_cols=236 Identities=18% Similarity=0.133 Sum_probs=129.0
Q ss_pred CCCCceEEEeccCCccccccc----cchhhccCCeeeEEecchhhhhhccccccc----cCchh-------hccCcCCEE
Q 011151 94 GLRGLRSLLVESDDYSWFSEV----LPQLFDKLTCLRALKLEVRQRWLCKNFIKK----IPTNI-------EKLLHLKYL 158 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~----l~~~~-------~~l~~L~~L 158 (492)
.+++|+.|++++|. +... ++..+..+++|++|+|+ ++.+.. +|..+ ..+++|++|
T Consensus 30 ~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls-------~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT---IGTEAARWLSENIASKKDLEIAEFS-------DIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HCSCCCEEECTTSE---ECHHHHHHHHHTTTTCTTCCEEECC-------SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred cCCCccEEECCCCC---CCHHHHHHHHHHHHhCCCccEEeCc-------ccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 67778888888876 4433 33345677888888887 544332 23333 567788888
Q ss_pred EccCCCCccc-----cchhhhcCCCCCeeecCccccccc----ccccccCC---------CCCcEEecCCCccc-cccc-
Q 011151 159 SLCGQREIEK-----LPETLCELYNLERLNITSCNHLRE----LPQGIGKL---------RKLMYLDNDDTWFL-RYLP- 218 (492)
Q Consensus 159 ~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~l---------~~L~~L~l~~~~~~-~~~~- 218 (492)
++++|. ++. +|..+..+++|++|++++|.+... ++..+..+ ++|++|++++|.+. ..++
T Consensus 100 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 100 RLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp ECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred ECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 888887 443 666677788888888888774322 22333334 77888888877664 2233
Q ss_pred --ccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHh-hhcccCCcceEecccccCCCC
Q 011151 219 --VGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRA-ELEKKKNLVELGLHFDRLRDG 295 (492)
Q Consensus 219 --~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~ 295 (492)
..+..+++|+.|++..+.... . ....... .+..+++|+.|++++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~--~-------------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~- 230 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRP--E-------------------------GIEHLLLEGLAYCQELKVLDLQDNTFTH- 230 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCH--H-------------------------HHHHHHHTTGGGCTTCCEEECCSSCCHH-
T ss_pred HHHHHHhCCCcCEEECcCCCCCH--h-------------------------HHHHHHHHHhhcCCCccEEECcCCCCCc-
Confidence 234456666666665553321 0 0000111 34455556666666555311
Q ss_pred chhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc---cCchhhhc--cccccEEEEecccCCC----cCCC-C-CCC
Q 011151 296 DEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV---VPRNWVMS--LTNLRALLLKNCRNCE----HLPP-L-GKL 364 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---l~~~~~~~--l~~L~~L~L~~~~~~~----~~~~-l-~~l 364 (492)
.....++..+..+++|++|++++|.+.... + +..+.. +++|+.|++++|.+.. .++. + .++
T Consensus 231 -------~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 231 -------LGSSALAIALKSWPNLRELGLNDCLLSARGAAAV-VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp -------HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH-HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH-HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 011334445555566666666666544310 1 222322 5566666666665444 1332 2 335
Q ss_pred Cccceeeccccc
Q 011151 365 PSLESLYIEGMQ 376 (492)
Q Consensus 365 ~~L~~L~l~~~~ 376 (492)
++|++|++++|.
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 566666666655
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=5.8e-17 Score=150.97 Aligned_cols=198 Identities=20% Similarity=0.185 Sum_probs=110.4
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccchh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~ 172 (492)
++++++.+++.++. ++. +|..+ .+.++.|+++ ++.+..++ ..+.++++|++|++++|. ++.++..
T Consensus 8 ~l~~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~-------~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRN---LTA-LPPDL--PKDTTILHLS-------ENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD 73 (290)
T ss_dssp CSTTCCEEECTTSC---CSS-CCSCC--CTTCCEEECT-------TSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC
T ss_pred ccCCccEEECCCCC---CCc-CCCCC--CCCCCEEEcC-------CCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC
Confidence 55666666666655 444 33222 1456666666 55555543 345666666666666666 5555442
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+.
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~------------------------------ 121 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR------------------------------ 121 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT------------------------------
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHc------------------------------
Confidence 556666666666665 455565556666666666666644322222233
Q ss_pred ccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc
Q 011151 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV 332 (492)
Q Consensus 253 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 332 (492)
++++|+.|++++|.++... +..+..+++|+.|++++|.+..
T Consensus 122 -------------------------~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~L~~N~l~~-- 162 (290)
T 1p9a_G 122 -------------------------GLGELQELYLKGNELKTLP------------PGLLTPTPKLEKLSLANNNLTE-- 162 (290)
T ss_dssp -------------------------TCTTCCEEECTTSCCCCCC------------TTTTTTCTTCCEEECTTSCCSC--
T ss_pred -------------------------CCCCCCEEECCCCCCCccC------------hhhcccccCCCEEECCCCcCCc--
Confidence 3344555555555543221 1223445566666666666655
Q ss_pred cCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccc
Q 011151 333 VPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 333 l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 376 (492)
+++..+..+++|+.|++++|.+....+.+..+++|+.|++++|+
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 54445566777777777777655433335566677777777665
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=6.8e-19 Score=171.57 Aligned_cols=267 Identities=16% Similarity=0.103 Sum_probs=176.2
Q ss_pred cchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEccCCCCcc----ccchhh-------hcCCC
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSLCGQREIE----KLPETL-------CELYN 178 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~----~lp~~~-------~~l~~ 178 (492)
++..+..+++|++|+|+ ++.+.. ++..+..+++|++|++++|. +. .+|..+ ..+++
T Consensus 24 l~~~l~~~~~L~~L~L~-------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS-------GNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECT-------TSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCccEEECC-------CCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCc
Confidence 55667888889999998 776654 33446678899999998874 33 445444 67889
Q ss_pred CCeeecCcccccc----cccccccCCCCCcEEecCCCccccccccccc----cc---------ccccccceEEeecccCC
Q 011151 179 LERLNITSCNHLR----ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG----EL---------INLRRVTKFVVGGGYDR 241 (492)
Q Consensus 179 L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l---------~~L~~L~l~~~~~~~~~ 241 (492)
|++|++++|.+.. .+|..+..+++|++|++++|.+....+..+. .+ ++|++|+++.+...
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~--- 172 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--- 172 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT---
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC---
Confidence 9999999888544 3677788888999999998876433232222 22 44555544433221
Q ss_pred CcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhh-hcCCCCCccE
Q 011151 242 ARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLE-ALGPPPNLKE 320 (492)
Q Consensus 242 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~L~~ 320 (492)
......+...+..+++|+.|++++|.+++. ....+.. .+..+++|++
T Consensus 173 ------------------------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--------g~~~l~~~~l~~~~~L~~ 220 (386)
T 2ca6_A 173 ------------------------NGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--------GIEHLLLEGLAYCQELKV 220 (386)
T ss_dssp ------------------------GGGHHHHHHHHHHCTTCCEEECCSSCCCHH--------HHHHHHHTTGGGCTTCCE
T ss_pred ------------------------cHHHHHHHHHHHhCCCcCEEECcCCCCCHh--------HHHHHHHHHhhcCCCccE
Confidence 111112224567888999999999986421 1122333 7788999999
Q ss_pred EEEeecCCCc---cccCchhhhccccccEEEEecccCCCc----CCC-C--CCCCccceeecccccccee-----ecccc
Q 011151 321 LVIDEYRGRR---NVVPRNWVMSLTNLRALLLKNCRNCEH----LPP-L--GKLPSLESLYIEGMQSVKR-----VGNEF 385 (492)
Q Consensus 321 L~l~~~~~~~---~~l~~~~~~~l~~L~~L~L~~~~~~~~----~~~-l--~~l~~L~~L~l~~~~~l~~-----~~~~~ 385 (492)
|++++|.+.. ..+ +..+..+++|++|+|++|.+... ++. + +.+++|++|+|++|. +.. ++..+
T Consensus 221 L~Ls~n~l~~~g~~~l-~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l 298 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSAL-AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI 298 (386)
T ss_dssp EECCSSCCHHHHHHHH-HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH
T ss_pred EECcCCCCCcHHHHHH-HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH
Confidence 9999999841 115 67788999999999999987654 222 3 458999999999998 333 33322
Q ss_pred cCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecC
Q 011151 386 LGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG 440 (492)
Q Consensus 386 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (492)
. ..+|+|+.|++++|+ +..... .+......+++++.+++..
T Consensus 299 ~-----------~~l~~L~~L~l~~N~-l~~~~~--~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 299 D-----------EKMPDLLFLELNGNR-FSEEDD--VVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp H-----------HHCTTCCEEECTTSB-SCTTSH--HHHHHHHHHHHHTCCEECC
T ss_pred H-----------hcCCCceEEEccCCc-CCcchh--HHHHHHHHhhhcCcchhhh
Confidence 1 257999999999987 433220 0001122456666666644
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=4.6e-17 Score=147.42 Aligned_cols=116 Identities=15% Similarity=0.239 Sum_probs=80.5
Q ss_pred EEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccc-ccccCc-hhhccC
Q 011151 76 LTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNF-IKKIPT-NIEKLL 153 (492)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l~~-~~~~l~ 153 (492)
+.+..+..+|. +. +.++.|++++|. +....+..|..+++|++|+++ ++. +..++. .+.+++
T Consensus 18 v~c~~l~~ip~-~~------~~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~-------~n~~l~~i~~~~f~~l~ 80 (239)
T 2xwt_C 18 VTCKDIQRIPS-LP------PSTQTLKLIETH---LRTIPSHAFSNLPNISRIYVS-------IDVTLQQLESHSFYNLS 80 (239)
T ss_dssp EEECSCSSCCC-CC------TTCCEEEEESCC---CSEECTTTTTTCTTCCEEEEE-------CCSSCCEECTTTEESCT
T ss_pred eEccCccccCC-CC------CcccEEEEeCCc---ceEECHHHccCCCCCcEEeCC-------CCCCcceeCHhHcCCCc
Confidence 34444665565 43 478888888877 666555567778888888888 665 777765 577788
Q ss_pred cCCEEEccC-CCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCc---EEecCCC
Q 011151 154 HLKYLSLCG-QREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLM---YLDNDDT 211 (492)
Q Consensus 154 ~L~~L~L~~-~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~---~L~l~~~ 211 (492)
+|++|++++ |. ++.+|. .+..+++|++|++++|. +..+|. +..+++|+ +|++++|
T Consensus 81 ~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 81 KVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp TCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred CCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence 888888887 66 666653 46677788888888777 555665 66666666 7777766
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=2.8e-18 Score=164.02 Aligned_cols=225 Identities=17% Similarity=0.129 Sum_probs=153.4
Q ss_pred ceEEEEEEeecCCCcccccccCccCC--CCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc--c
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGL--RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK--I 145 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--l 145 (492)
..+++++.++.+. +..+. .+ +.++.|++.++. +.+..+. +..+++|++|+++ ++.+.. +
T Consensus 48 ~~~~l~l~~~~~~--~~~~~----~~~~~~l~~L~l~~n~---l~~~~~~-~~~~~~L~~L~L~-------~~~l~~~~~ 110 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTG----RLLSQGVIAFRCPRSF---MDQPLAE-HFSPFRVQHMDLS-------NSVIEVSTL 110 (336)
T ss_dssp TSSEEECTTCBCC--HHHHH----HHHHTTCSEEECTTCE---ECSCCCS-CCCCBCCCEEECT-------TCEECHHHH
T ss_pred hheeeccccccCC--HHHHH----hhhhccceEEEcCCcc---ccccchh-hccCCCCCEEEcc-------CCCcCHHHH
Confidence 4668888877766 44443 55 889999999987 6665555 5678999999999 777654 6
Q ss_pred CchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccc--cccccccCCCCCcEEecCCC-ccccc-ccccc
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR--ELPQGIGKLRKLMYLDNDDT-WFLRY-LPVGI 221 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~~~~l 221 (492)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|..+. .++..+.++++|++|++++| .+... ++..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 7778899999999999998444777888899999999999994344 46777888999999999999 66543 55667
Q ss_pred cccc-cccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEeccccc-CCCCchhh
Q 011151 222 GELI-NLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR-LRDGDEEQ 299 (492)
Q Consensus 222 ~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~ 299 (492)
..++ +|+.|++..+.... . .......+..+++|+.|++++|. ++
T Consensus 191 ~~l~~~L~~L~l~~~~~~~--------------------------~--~~~l~~~~~~~~~L~~L~l~~~~~l~------ 236 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNL--------------------------Q--KSDLSTLVRRCPNLVHLDLSDSVMLK------ 236 (336)
T ss_dssp HHSCTTCCEEECCSCGGGS--------------------------C--HHHHHHHHHHCTTCSEEECTTCTTCC------
T ss_pred HhcccCCCEEEeCCCcccC--------------------------C--HHHHHHHHhhCCCCCEEeCCCCCcCC------
Confidence 7777 88888776653110 0 00111234456667777776665 22
Q ss_pred HhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecc
Q 011151 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNC 352 (492)
Q Consensus 300 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~ 352 (492)
...+..+..+++|++|++++|....+.. ...+..+++|+.|++++|
T Consensus 237 ------~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 ------NDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ------GGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS
T ss_pred ------HHHHHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEEeccCc
Confidence 1223344556677777777665222101 123556677777777766
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=4.6e-17 Score=150.43 Aligned_cols=85 Identities=22% Similarity=0.186 Sum_probs=48.3
Q ss_pred ccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc
Q 011151 278 KKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357 (492)
Q Consensus 278 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~ 357 (492)
.+++|+.|++++|.+++.. +..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+..
T Consensus 155 ~l~~L~~L~l~~n~l~~~~------------~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~- 219 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLP------------EGVFDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC- 219 (272)
T ss_dssp TCTTCCEEECCSSCCCCCC------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCC-
T ss_pred cCccCCEEECCCCCcCccC------------HHHhcCCccCCEEECCCCcCCc--cCHHHHhCCcCCCEEEccCCCccc-
Confidence 3445555666555543221 1223455666666666666665 545556677777777777775432
Q ss_pred CCCCCCCCccceeeccccccceeec
Q 011151 358 LPPLGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 358 ~~~l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
.+++|+.|+++.|.....++
T Consensus 220 -----~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 220 -----TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp -----CTTTTHHHHHHHHHTGGGBB
T ss_pred -----cCcHHHHHHHHHHhCCCccc
Confidence 35567777776665433333
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=2.6e-16 Score=147.97 Aligned_cols=143 Identities=21% Similarity=0.266 Sum_probs=118.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+++.++.+..++ .+. .+++|+.|++++|. +.. ++. +..+++|++|+++ ++.+..++ .
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~----~l~~L~~L~L~~n~---i~~-~~~-~~~l~~L~~L~L~-------~n~l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQ----YLNNLIGLELKDNQ---ITD-LAP-LKNLTKITELELS-------GNPLKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCCSCCEEECC-------SCCCSCCG-G
T ss_pred CCcCEEEeeCCCccCch-hhh----ccCCCCEEEccCCc---CCC-Chh-HccCCCCCEEEcc-------CCcCCCch-h
Confidence 58999999999988765 444 89999999999998 666 444 8999999999999 88888875 6
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..++. +..+++|++|++++|. +..++. +..+++|++|++++|.+.. ++. +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCC
Confidence 8899999999999999 787875 8999999999999998 666665 8899999999999997643 333 66666666
Q ss_pred ccceEEe
Q 011151 229 RVTKFVV 235 (492)
Q Consensus 229 ~L~l~~~ 235 (492)
.|++..+
T Consensus 177 ~L~l~~n 183 (308)
T 1h6u_A 177 TLKADDN 183 (308)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666544
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.7e-17 Score=151.98 Aligned_cols=207 Identities=18% Similarity=0.213 Sum_probs=128.1
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchh-
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET- 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~- 172 (492)
.+++|+.|.+.++. +.. ++. +..+++|++|+++ ++.+..++ .+.++++|++|++++|. +..++..
T Consensus 39 ~l~~L~~L~l~~~~---i~~-~~~-l~~l~~L~~L~l~-------~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSD---IKS-VQG-IQYLPNVRYLALG-------GNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGV 104 (272)
T ss_dssp HHTTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECT-------TSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccceeeeeeCCCC---ccc-ccc-cccCCCCcEEECC-------CCCCCCch-hhcCCCCCCEEECCCCc-cCccChhH
Confidence 56667777777766 333 232 6667777777777 66666653 56667777777777776 5555443
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
+.++++|++|++++|.+....+..++.+++|++|++++|.+....+..+..+++|+.|+++.+....
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------- 171 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS------------- 171 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-------------
Confidence 5667777777777777333333335667777777777776644444445666666666665543221
Q ss_pred ccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc
Q 011151 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV 332 (492)
Q Consensus 253 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 332 (492)
++. ..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+..
T Consensus 172 ------------~~~------~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~l~~N~~~~-- 219 (272)
T 3rfs_A 172 ------------LPE------GVFDKLTQLKDLRLYQNQLKSVP------------DGVFDRLTSLQYIWLHDNPWDC-- 219 (272)
T ss_dssp ------------CCT------TTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTTCCEEECCSSCBCC--
T ss_pred ------------cCH------HHhcCCccCCEEECCCCcCCccC------------HHHHhCCcCCCEEEccCCCccc--
Confidence 000 12445667777777777754332 2345667888888888876543
Q ss_pred cCchhhhccccccEEEEecccCCCcCCC-CCCCCc
Q 011151 333 VPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPS 366 (492)
Q Consensus 333 l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~ 366 (492)
.+++|+.|+++.|.+.+.+|. ++.++.
T Consensus 220 -------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 -------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 456788888888888777766 554443
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.3e-16 Score=148.65 Aligned_cols=199 Identities=16% Similarity=0.067 Sum_probs=156.0
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+++.++.+..+|..+. +.++.|++++|. +....+..|..+++|++|+++ ++.+..++..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~------~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP------KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLD-------RAELTKLQVD 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC------TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECT-------TSCCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC------CCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECC-------CCccCcccCC
Confidence 577889999999988887654 789999999998 777677889999999999999 8888888764
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|.+....+..+..+++|
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 789999999999999 88999889999999999999999 55554 668999999999999998865555556788888
Q ss_pred cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
+.|++..+.... ++. ..+..+++|+.|++++|.++..+.
T Consensus 151 ~~L~L~~N~l~~-------------------------l~~------~~~~~l~~L~~L~L~~N~l~~ip~---------- 189 (290)
T 1p9a_G 151 EKLSLANNNLTE-------------------------LPA------GLLNGLENLDTLLLQENSLYTIPK---------- 189 (290)
T ss_dssp CEEECTTSCCSC-------------------------CCT------TTTTTCTTCCEEECCSSCCCCCCT----------
T ss_pred CEEECCCCcCCc-------------------------cCH------HHhcCcCCCCEEECCCCcCCccCh----------
Confidence 888877654332 111 124456677777777777765542
Q ss_pred HhhhcCCCCCccEEEEeecCCCc
Q 011151 308 LLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
.+...++|+.+.+++|....
T Consensus 190 ---~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 190 ---GFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ---TTTTTCCCSEEECCSCCBCC
T ss_pred ---hhcccccCCeEEeCCCCccC
Confidence 23345678888888777654
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=9.1e-17 Score=145.47 Aligned_cols=92 Identities=21% Similarity=0.305 Sum_probs=51.0
Q ss_pred ccccCchhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCC-Cccccccc
Q 011151 142 IKKIPTNIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDD-TWFLRYLP 218 (492)
Q Consensus 142 ~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~-~~~~~~~~ 218 (492)
+..+|. +. .+|++|++++|. ++.+|. .+..+++|++|++++|..+..++ ..+.++++|++|++++ |.+....+
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 455554 22 356666666666 555544 45566666666666664233333 2456666666666666 54433333
Q ss_pred ccccccccccccceEEeec
Q 011151 219 VGIGELINLRRVTKFVVGG 237 (492)
Q Consensus 219 ~~l~~l~~L~~L~l~~~~~ 237 (492)
..+..+++|+.|++..+..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp TSEECCTTCCEEEEEEECC
T ss_pred HHhCCCCCCCEEeCCCCCC
Confidence 4455566666666655543
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=7.3e-18 Score=162.62 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=121.3
Q ss_pred CCceEEEeccCCccccccccc----hhhccCC-eeeEEecchhhhhhcccccccc-Cchhhcc-----CcCCEEEccCCC
Q 011151 96 RGLRSLLVESDDYSWFSEVLP----QLFDKLT-CLRALKLEVRQRWLCKNFIKKI-PTNIEKL-----LHLKYLSLCGQR 164 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~----~~~~~~~-~L~~L~L~~~~~~~~~~~~~~l-~~~~~~l-----~~L~~L~L~~~~ 164 (492)
++|+.|++++|. +....+ ..+..++ +|++|+++ ++.+... +..+..+ ++|++|++++|.
T Consensus 22 ~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls-------~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNN---LYSISTVELIQAFANTPASVTSLNLS-------GNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TTCCEEECTTSC---GGGSCHHHHHHHHHTCCTTCCEEECC-------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCceEEEccCCC---CChHHHHHHHHHHHhCCCceeEEECc-------CCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 346667766666 444333 4455666 66666666 5555554 2333333 666666666666
Q ss_pred Cccc-cchh----hhcC-CCCCeeecCccccccccccc----ccC-CCCCcEEecCCCcccccc----cccccccc-ccc
Q 011151 165 EIEK-LPET----LCEL-YNLERLNITSCNHLRELPQG----IGK-LRKLMYLDNDDTWFLRYL----PVGIGELI-NLR 228 (492)
Q Consensus 165 ~~~~-lp~~----~~~l-~~L~~L~l~~~~~~~~lp~~----~~~-l~~L~~L~l~~~~~~~~~----~~~l~~l~-~L~ 228 (492)
++. .+.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|.+.... +..+..++ +|+
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 432 2222 2233 56666666666633222222 223 246666666666554322 12222222 444
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhccc-CCcceEecccccCCCCchhhHhhhhHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKK-KNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
.|+++.+.... .....+...+..+ ++|+.|++++|.+++.. ...
T Consensus 171 ~L~Ls~n~l~~---------------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--------~~~ 215 (362)
T 3goz_A 171 SLNLRGNNLAS---------------------------KNCAELAKFLASIPASVTSLDLSANLLGLKS--------YAE 215 (362)
T ss_dssp EEECTTSCGGG---------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--------HHH
T ss_pred EeeecCCCCch---------------------------hhHHHHHHHHHhCCCCCCEEECCCCCCChhH--------HHH
Confidence 44444332221 1111122334445 47888888877754321 233
Q ss_pred HhhhcCC-CCCccEEEEeecCCCccccCc----hhhhccccccEEEEecccCCCc-------C-CCCCCCCccceeeccc
Q 011151 308 LLEALGP-PPNLKELVIDEYRGRRNVVPR----NWVMSLTNLRALLLKNCRNCEH-------L-PPLGKLPSLESLYIEG 374 (492)
Q Consensus 308 ~~~~l~~-~~~L~~L~l~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~-------~-~~l~~l~~L~~L~l~~ 374 (492)
++..+.. .++|++|++++|.+.. .++ ..+..+++|+.|++++|.+... + ..+..+++|+.|++++
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHhcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 4444444 3578888888777665 212 2234567788888877752211 1 1255677777778877
Q ss_pred cc
Q 011151 375 MQ 376 (492)
Q Consensus 375 ~~ 376 (492)
|.
T Consensus 294 N~ 295 (362)
T 3goz_A 294 KE 295 (362)
T ss_dssp CB
T ss_pred Cc
Confidence 76
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2e-16 Score=145.98 Aligned_cols=201 Identities=21% Similarity=0.251 Sum_probs=142.4
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN- 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~- 148 (492)
..+.++++++.+..+|..+. +.++.|++++|. +....+..|..+++|++|+++ ++.+..+|..
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~------~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~i~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP------ADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLN-------DNKLQTLPAGI 80 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC------TTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECC-------SSCCSCCCTTT
T ss_pred CCCEEEccCCCCCccCCCCC------CCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECC-------CCccCeeChhh
Confidence 34577788888887776543 678899999887 666556678888999999998 8888888765
Q ss_pred hhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
+.++++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|
T Consensus 81 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 81 FKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 5778899999999998 666665 46788899999999988444444557888999999999987754444446778888
Q ss_pred cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
+.|++..+.... ++. ..+..+++|+.|++++|.++....
T Consensus 160 ~~L~L~~n~l~~-------------------------~~~------~~~~~l~~L~~L~L~~N~l~~~~~---------- 198 (270)
T 2o6q_A 160 KELRLYNNQLKR-------------------------VPE------GAFDKLTELKTLKLDNNQLKRVPE---------- 198 (270)
T ss_dssp CEEECCSSCCSC-------------------------CCT------TTTTTCTTCCEEECCSSCCSCCCT----------
T ss_pred ceeEecCCcCcE-------------------------eCh------hHhccCCCcCEEECCCCcCCcCCH----------
Confidence 888776654332 010 124455667777777776665432
Q ss_pred HhhhcCCCCCccEEEEeecCCCc
Q 011151 308 LLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
..+..+++|+.|++++|....
T Consensus 199 --~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 199 --GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp --TTTTTCTTCCEEECCSSCBCC
T ss_pred --HHhccccCCCEEEecCCCeeC
Confidence 123456677777777776544
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=150.45 Aligned_cols=228 Identities=18% Similarity=0.078 Sum_probs=137.6
Q ss_pred CCCCceEEEeccCCccc--cccccchhhccCCeeeEEecchhhhhhccccccc-cCchh--hccCcCCEEEccCCCCccc
Q 011151 94 GLRGLRSLLVESDDYSW--FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-IPTNI--EKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l~~~~--~~l~~L~~L~L~~~~~~~~ 168 (492)
....++.+.+.++.... +.. +.. +..+++|++|+++ ++.+.. .|..+ ..+++|++|++++|.+.+.
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~-------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVG-ALR-VLAYSRLKELTLE-------DLKITGTMPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHH-HHH-HHHHSCCCEEEEE-------SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred hhcceeEEEEeCCcCCHHHHHH-HHH-hcccCceeEEEee-------CCEeccchhhhhhhccCCCCCEEEeecccccch
Confidence 33456777777765221 111 111 2234568888888 666653 45555 7788888888888883333
Q ss_pred cc----hhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccc--cc--ccccccccccccceEEeecccC
Q 011151 169 LP----ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRY--LP--VGIGELINLRRVTKFVVGGGYD 240 (492)
Q Consensus 169 lp----~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~--~~l~~l~~L~~L~l~~~~~~~~ 240 (492)
.+ ..+..+++|++|++++|.+....|..++.+++|++|++++|.+.+. ++ ..+..+++|+.|+++.+....
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 211 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET- 211 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-
Confidence 33 2345688888888888885445556777888888888888865432 21 122455666666655443211
Q ss_pred CCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCC---CC
Q 011151 241 RARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPP---PN 317 (492)
Q Consensus 241 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~---~~ 317 (492)
........+..+++|+.|++++|.+++. .+..+..+ ++
T Consensus 212 ---------------------------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~------------~p~~~~~~~~~~~ 252 (310)
T 4glp_A 212 ---------------------------PTGVCAALAAAGVQPHSLDLSHNSLRAT------------VNPSAPRCMWSSA 252 (310)
T ss_dssp ---------------------------HHHHHHHHHHHTCCCSSEECTTSCCCCC------------CCSCCSSCCCCTT
T ss_pred ---------------------------hHHHHHHHHhcCCCCCEEECCCCCCCcc------------chhhHHhccCcCc
Confidence 0000011245667888888888876433 12223333 67
Q ss_pred ccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccc
Q 011151 318 LKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 318 L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 376 (492)
|++|++++|.+.. + |..+. ++|+.|++++|.+.+. |.+..+++|+.|++++|+
T Consensus 253 L~~L~Ls~N~l~~--l-p~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 253 LNSLNLSFAGLEQ--V-PKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCEECCSSCCCS--C-CSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CCEEECCCCCCCc--h-hhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 7888887777775 6 44442 6777888877765542 445667777777777776
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=4.7e-16 Score=149.15 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=48.5
Q ss_pred CccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC--CCCCCccceeeccccccceeecccccCCcCCCCC
Q 011151 317 NLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDG 394 (492)
Q Consensus 317 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 394 (492)
.++.|++++|.+.. + +.......+|+.|++.+++..+.+|. +..+++|++|++++|. ++.++..
T Consensus 155 ~l~~L~L~~N~i~~--i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~---------- 220 (350)
T 4ay9_X 155 ESVILWLNKNGIQE--I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY---------- 220 (350)
T ss_dssp SCEEEECCSSCCCE--E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS----------
T ss_pred hhhhhccccccccC--C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh----------
Confidence 45556666665555 5 33232344556666655444444443 4555666666666554 4433321
Q ss_pred CcccccccccceeccCcccccccccCccccccccCCCCcceEeecC
Q 011151 395 SSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG 440 (492)
Q Consensus 395 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (492)
.+.+|+.|.+.++.+++.++ .+..+++|+.+++.+
T Consensus 221 ----~~~~L~~L~~l~~~~l~~lP-------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ----GLENLKKLRARSTYNLKKLP-------TLEKLVALMEASLTY 255 (350)
T ss_dssp ----SCTTCCEEECTTCTTCCCCC-------CTTTCCSCCEEECSC
T ss_pred ----hhccchHhhhccCCCcCcCC-------CchhCcChhhCcCCC
Confidence 34445555444444444332 133455555555543
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=5.6e-17 Score=156.41 Aligned_cols=241 Identities=11% Similarity=0.081 Sum_probs=167.4
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCC-CceEEEeccCCccccccccchhhccC-----CeeeEEecchhhhhhcccc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLR-GLRSLLVESDDYSWFSEVLPQLFDKL-----TCLRALKLEVRQRWLCKNF 141 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~ 141 (492)
.+++.+++++|.+...+ ..+...+..++ +|+.|++++|. +....+..+..+ ++|++|+++ ++.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~---l~~~~~~~l~~~l~~~~~~L~~L~Ls-------~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS---LGFKNSDELVQILAAIPANVTSLNLS-------GNF 91 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC---GGGSCHHHHHHHHHTSCTTCCEEECC-------SSC
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC---CCHHHHHHHHHHHhccCCCccEEECc-------CCc
Confidence 56999999999988744 22223344788 99999999998 666555556554 899999999 888
Q ss_pred ccccCch-----hhcc-CcCCEEEccCCCCccccch-hh----hc-CCCCCeeecCcccccc----cccccccCCC-CCc
Q 011151 142 IKKIPTN-----IEKL-LHLKYLSLCGQREIEKLPE-TL----CE-LYNLERLNITSCNHLR----ELPQGIGKLR-KLM 204 (492)
Q Consensus 142 ~~~l~~~-----~~~l-~~L~~L~L~~~~~~~~lp~-~~----~~-l~~L~~L~l~~~~~~~----~lp~~~~~l~-~L~ 204 (492)
+...+.. +..+ ++|++|++++|. ++..+. .+ .. ..+|++|++++|.+.. .++..+..++ +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 8765432 4445 899999999999 665443 33 33 3699999999998543 4455556666 999
Q ss_pred EEecCCCccccccccccc----cc-ccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcc-
Q 011151 205 YLDNDDTWFLRYLPVGIG----EL-INLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEK- 278 (492)
Q Consensus 205 ~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~- 278 (492)
+|++++|.+....+..+. .+ ++|+.|+++.+.... .....+...+..
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~---------------------------~~~~~l~~~l~~~ 223 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL---------------------------KSYAELAYIFSSI 223 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG---------------------------SCHHHHHHHHHHS
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh---------------------------hHHHHHHHHHhcC
Confidence 999999988665554443 34 578888777665432 000111233444
Q ss_pred cCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC-------chhhhccccccEEEEec
Q 011151 279 KKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP-------RNWVMSLTNLRALLLKN 351 (492)
Q Consensus 279 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~-------~~~~~~l~~L~~L~L~~ 351 (492)
.++|+.|++++|.+++.. ...+...+..+++|++|++++|.+.. +. +..+..+++|+.|++++
T Consensus 224 ~~~L~~L~Ls~N~l~~~~--------~~~l~~~~~~l~~L~~L~L~~n~l~~--i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPS--------LENLKLLKDSLKHLQTVYLDYDIVKN--MSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp CTTCCEEECCSSCCCCCC--------HHHHHHTTTTTTTCSEEEEEHHHHTT--CCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred CCCceEEECcCCCCCcHH--------HHHHHHHHhcCCCccEEEeccCCccc--cCHHHHHHHHHHhccCCceEEEecCC
Confidence 458999999999887653 24445566778899999999997433 21 22344778899999999
Q ss_pred ccCCCc
Q 011151 352 CRNCEH 357 (492)
Q Consensus 352 ~~~~~~ 357 (492)
|.+...
T Consensus 294 N~l~~~ 299 (362)
T 3goz_A 294 KEIHPS 299 (362)
T ss_dssp CBCCGG
T ss_pred CcCCCc
Confidence 876544
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=1.5e-15 Score=145.72 Aligned_cols=238 Identities=14% Similarity=0.117 Sum_probs=131.5
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-hhhcC
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TLCEL 176 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l 176 (492)
++++.+++. ++. +|..+ .++++.|+|+ ++.+..+|. .|.++++|++|+|++|.+.+.+|. .+.++
T Consensus 12 ~~v~C~~~~---Lt~-iP~~l--~~~l~~L~Ls-------~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESK---VTE-IPSDL--PRNAIELRFV-------LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp TEEEEESTT---CCS-CCTTC--CTTCSEEEEE-------SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CEEEecCCC---CCc-cCcCc--CCCCCEEEcc-------CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 345555544 444 34322 2356666666 666666654 356666666666666663344443 24455
Q ss_pred CCCCee-ecCcccccccc-cccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 177 YNLERL-NITSCNHLREL-PQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 177 ~~L~~L-~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
++|+.+ .+++|. +..+ |..+..+++|++|++++|.+....+.......++..|.+..+
T Consensus 79 ~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~------------------- 138 (350)
T 4ay9_X 79 PKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN------------------- 138 (350)
T ss_dssp TTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-------------------
T ss_pred hhhhhhhcccCCc-ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-------------------
Confidence 555543 333344 3333 344556666666666666443222222222222222222111
Q ss_pred CCceEecCCCCCChhhhhHhhhccc-CCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEee-cCCCccc
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKK-KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDE-YRGRRNV 332 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~ 332 (492)
..+..++. ..+..+ ..++.|++++|.++. ++.......+|+++.+.+ +.+..
T Consensus 139 -----~~i~~l~~------~~f~~~~~~l~~L~L~~N~i~~-------------i~~~~f~~~~L~~l~l~~~n~l~~-- 192 (350)
T 4ay9_X 139 -----INIHTIER------NSFVGLSFESVILWLNKNGIQE-------------IHNSAFNGTQLDELNLSDNNNLEE-- 192 (350)
T ss_dssp -----TTCCEECT------TSSTTSBSSCEEEECCSSCCCE-------------ECTTSSTTEEEEEEECTTCTTCCC--
T ss_pred -----cccccccc------cchhhcchhhhhhccccccccC-------------CChhhccccchhHHhhccCCcccC--
Confidence 00111111 112233 468889999998642 334455567899999975 55555
Q ss_pred cCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccC
Q 011151 333 VPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD 410 (492)
Q Consensus 333 l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (492)
+++..+..+++|+.|++++|.+....+. .+.+|+.|.+.++..++.++. +..+++|+.+++.+
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-------------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-------------LEKLVALMEASLTY 255 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-------------TTTCCSCCEEECSC
T ss_pred CCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-------------chhCcChhhCcCCC
Confidence 7567789999999999999976544332 355677777767766666552 22788888888765
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.2e-16 Score=150.66 Aligned_cols=228 Identities=17% Similarity=0.067 Sum_probs=159.3
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhh--ccCCeeeEEecchhhhhhcccccccc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLF--DKLTCLRALKLEVRQRWLCKNFIKKI 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~l 145 (492)
..++++.+....+.... ..+. .+..+++|+.|++++|. +.+..|..+ ..+++|++|+++ ++.+...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls-------~n~i~~~ 132 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGAL-RVLAYSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLR-------NVSWATG 132 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHH-HHHHHSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEE-------SCCCSST
T ss_pred cceeEEEEeCCcCCHHHHHHHH-HhcccCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEee-------cccccch
Confidence 45778888777665310 1111 11145779999999998 777677767 889999999999 8877652
Q ss_pred -C----chhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCccccccc--cc--ccccCCCCCcEEecCCCcccc
Q 011151 146 -P----TNIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRE--LP--QGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 146 -~----~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~--lp--~~~~~l~~L~~L~l~~~~~~~ 215 (492)
+ ..+..+++|++|++++|. +..+ |..+..+++|++|++++|.+... ++ ..+..+++|++|++++|.+.
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 210 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME- 210 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-
T ss_pred hhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-
Confidence 2 234578999999999999 5554 46788999999999999985432 33 22468999999999999773
Q ss_pred ccccc----ccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEeccccc
Q 011151 216 YLPVG----IGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR 291 (492)
Q Consensus 216 ~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 291 (492)
.++.. +..+++|++|+++.+......+..+.. +..+++|+.|++++|.
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~----------------------------~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR----------------------------CMWSSALNSLNLSFAG 262 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS----------------------------CCCCTTCCCEECCSSC
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh----------------------------ccCcCcCCEEECCCCC
Confidence 33332 467788999988877655311111111 1223578888888888
Q ss_pred CCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC
Q 011151 292 LRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE 356 (492)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~ 356 (492)
++.. +..+ .++|++|++++|.+.. + |. +..+++|+.|++++|.+.+
T Consensus 263 l~~l-------------p~~~--~~~L~~L~Ls~N~l~~--~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 263 LEQV-------------PKGL--PAKLRVLDLSSNRLNR--A-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSC-------------CSCC--CSCCSCEECCSCCCCS--C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCch-------------hhhh--cCCCCEEECCCCcCCC--C-ch-hhhCCCccEEECcCCCCCC
Confidence 6422 2233 2689999999998887 5 43 5688999999999886653
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=8.2e-15 Score=133.58 Aligned_cols=154 Identities=23% Similarity=0.296 Sum_probs=84.7
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
..++.++++++.+..++.. .+.++++|+.|++++|. +.+..+..|..+++|++|+++ ++.+..++.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLA-------NNQLASLPLG 101 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-------TSCCCCCCTT
T ss_pred CCCCEEEccCCCcCccCHh---HhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEECC-------CCcccccChh
Confidence 4556666666665543321 11255666666666665 555445555666666666666 555555543
Q ss_pred hhhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
.+.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .++.+++|++|++++|.+....+..+..++
T Consensus 102 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 34556666666666665 4444443 3556666666666665 333333 455566666666666655444444455556
Q ss_pred cccccceEEeec
Q 011151 226 NLRRVTKFVVGG 237 (492)
Q Consensus 226 ~L~~L~l~~~~~ 237 (492)
+|+.|++..+..
T Consensus 180 ~L~~L~l~~N~~ 191 (251)
T 3m19_A 180 KLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSCCB
T ss_pred CCCEEEeeCCce
Confidence 666665555543
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=8.9e-15 Score=128.03 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=123.4
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-cCc
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-IPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l~~ 147 (492)
++++.++++++.+..++ .+. .+++|+.|++++|. +.. ++ .+..+++|++|+++ ++.+.. .+.
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~l~~n~---~~~-~~-~l~~l~~L~~L~l~-------~n~l~~~~~~ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIE----YAHNIKDLTINNIH---ATN-YN-PISGLSNLERLRIM-------GKDVTSDKIP 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGG----GCTTCSEEEEESCC---CSC-CG-GGTTCTTCCEEEEE-------CTTCBGGGSC
T ss_pred CCccEEeccCCCccChH-HHh----cCCCCCEEEccCCC---CCc-ch-hhhcCCCCCEEEeE-------CCccCcccCh
Confidence 68999999999998766 454 89999999999996 444 33 48889999999999 888775 677
Q ss_pred hhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
.+.++++|++|++++|.+.+..|..+..+++|++|++++|..+..+| .+..+++|++|++++|.+.. ++ .+..+++|
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L 183 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL 183 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC
Confidence 78999999999999999444577889999999999999998677777 58899999999999997744 44 67888999
Q ss_pred cccceEEeecc
Q 011151 228 RRVTKFVVGGG 238 (492)
Q Consensus 228 ~~L~l~~~~~~ 238 (492)
+.|++..+...
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 99988877543
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=6e-15 Score=134.47 Aligned_cols=175 Identities=20% Similarity=0.217 Sum_probs=138.7
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-h
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-N 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~ 148 (492)
..+.++++++.+..+|..+. +.++.|++++|. +.+..+..|..+++|++|+++ ++.+..++. .
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~------~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP------ADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLD-------YNQLQTLSAGV 78 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC------TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-------TSCCCCCCTTT
T ss_pred CCeEEecCCCCccccCCCCC------CCCCEEEccCCC---cCccCHhHhcCcccCCEEECC-------CCcCCccCHhH
Confidence 34578888888888887654 689999999998 777777789999999999999 888888765 4
Q ss_pred hhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
+.++++|++|++++|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++
T Consensus 79 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 7899999999999999 666664 47889999999999998 555554 4688999999999999886555556888889
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCC
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLR 293 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 293 (492)
|+.|++..+.... ++. ..+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~-------------------------~~~------~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQS-------------------------VPH------GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSC-------------------------CCT------TTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCc-------------------------cCH------HHHhCCCCCCEEEeeCCcee
Confidence 9988887764432 010 12456678888888888854
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=9.8e-15 Score=130.02 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=92.5
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~ 151 (492)
.++..++.+..+|..+. +.++.|++++|. +....+..|..+++|++|+|+ ++.+..+ |..+.+
T Consensus 15 ~v~c~~~~l~~iP~~l~------~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls-------~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP------ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLS-------NNQISELAPDAFQG 78 (220)
T ss_dssp EEECTTSCCSSCCSSCC------TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECC-------SSCCCEECTTTTTT
T ss_pred EEEcCCCCcCcCCCccC------cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECC-------CCcCCCcCHHHhhC
Confidence 44555555665555432 566777777766 555445556667777777777 6666665 455667
Q ss_pred cCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRV 230 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 230 (492)
+++|++|++++|. +..+|.. +..+++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 79 l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 79 LRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 7777777777776 5566554 4567777777777776433445556667777777777776654444456666666666
Q ss_pred ceEEeec
Q 011151 231 TKFVVGG 237 (492)
Q Consensus 231 ~l~~~~~ 237 (492)
++..+..
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 6665544
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=1.3e-14 Score=130.11 Aligned_cols=149 Identities=26% Similarity=0.332 Sum_probs=111.1
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~ 150 (492)
+.++..++.+..+|..+. ++|+.|++++|. +.+..|..|..+++|++|+|+ ++.+..+|.. +.
T Consensus 22 ~~v~c~~~~l~~ip~~~~------~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~-------~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP------TNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLG-------SNQLGALPVGVFD 85 (229)
T ss_dssp TEEECTTSCCSSCCSCCC------TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTTTTT
T ss_pred CEeEccCCCcCccCCCCC------CCCCEEEcCCCc---cCccCHHHhhCccCCcEEECC-------CCCCCCcChhhcc
Confidence 356666677777666543 778888888887 777667777888888888888 7778777744 57
Q ss_pred ccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 86 ~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 78888888888888 6666554 5778888888888888 6677877888888888888888775444455777788888
Q ss_pred cceEEeecc
Q 011151 230 VTKFVVGGG 238 (492)
Q Consensus 230 L~l~~~~~~ 238 (492)
|++..+...
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 777766543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=127.62 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=117.2
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccc-hhhccCCeeeEEecchhhhhhccccccccCc-hh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLP-QLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NI 149 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~ 149 (492)
+.++++++.+..+|..+. +.++.|++++|. +....+ ..|..+++|++|+++ ++.+..++. .+
T Consensus 14 ~~l~~s~n~l~~iP~~~~------~~~~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~ 77 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP------QYTAELRLNNNE---FTVLEATGIFKKLPQLRKINFS-------NNKITDIEEGAF 77 (220)
T ss_dssp TEEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCEECCCCCGGGCTTCCEEECC-------SSCCCEECTTTT
T ss_pred CEeEeCCCCcccCccCCC------CCCCEEEcCCCc---CCccCchhhhccCCCCCEEECC-------CCcCCEECHHHh
Confidence 367788888887776554 456888998887 666433 457888889999998 888888765 58
Q ss_pred hccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
.++++|++|++++|. +..++. .+..+++|++|++++|.+....|..+..+++|++|++++|.+....|..+..+++|+
T Consensus 78 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 78 EGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 888899999999998 665554 478888999999999885545577788889999999999888776677888888888
Q ss_pred ccceEEeecc
Q 011151 229 RVTKFVVGGG 238 (492)
Q Consensus 229 ~L~l~~~~~~ 238 (492)
.|++..+...
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 8888877654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=2.2e-14 Score=133.64 Aligned_cols=171 Identities=19% Similarity=0.210 Sum_probs=99.0
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.. ++. +..+++|++|+++ ++.+..++. +.++++|++|++++|. ++.+|. +
T Consensus 44 ~l~~L~~L~l~~~~---i~~-~~~-~~~l~~L~~L~L~-------~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l 108 (291)
T 1h6t_A 44 ELNSIDQIIANNSD---IKS-VQG-IQYLPNVTKLFLN-------GNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-L 108 (291)
T ss_dssp HHHTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-G
T ss_pred hcCcccEEEccCCC---ccc-Chh-HhcCCCCCEEEcc-------CCccCCCcc-cccCCCCCEEECCCCc-CCCChh-h
Confidence 45666666666665 333 232 5666666666666 666666554 6666666666666666 555543 6
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
..+++|++|++++|. +..++ .+..+++|++|++++|.+... ..+..+++|+.|+++.+....
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-------------- 170 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-------------- 170 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC--------------
T ss_pred ccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc--------------
Confidence 666666666666666 44443 356666666666666655332 344555555555554432221
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
. ..+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+..
T Consensus 171 -----------~--------~~l~~l~~L~~L~L~~N~i~~l~--------------~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 -----------I--------VPLAGLTKLQNLYLSKNHISDLR--------------ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -----------C--------GGGTTCTTCCEEECCSSCCCBCG--------------GGTTCTTCSEEEEEEEEEEC
T ss_pred -----------c--------hhhcCCCccCEEECCCCcCCCCh--------------hhccCCCCCEEECcCCcccC
Confidence 0 01334556667777777665331 24566777777777776665
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=3.6e-14 Score=132.17 Aligned_cols=145 Identities=22% Similarity=0.269 Sum_probs=121.2
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+.+.++.+..++. +. .+++|+.|++++|. +.+ ++. +..+++|++|+++ ++.+..++.
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~----~l~~L~~L~L~~n~---l~~-~~~-l~~l~~L~~L~l~-------~n~l~~~~~- 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQ----YLPNVTKLFLNGNK---LTD-IKP-LANLKNLGWLFLD-------ENKVKDLSS- 107 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCGGG-
T ss_pred CcccEEEccCCCcccChh-Hh----cCCCCCEEEccCCc---cCC-Ccc-cccCCCCCEEECC-------CCcCCCChh-
Confidence 588999999999887643 44 89999999999998 666 344 8899999999999 888888765
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..++ .+..+++|++|++++|. +..+ ..++.+++|++|++++|.+....+ +..+++|+
T Consensus 108 l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 8899999999999999 77774 58899999999999998 5555 468899999999999998755433 88888999
Q ss_pred ccceEEeec
Q 011151 229 RVTKFVVGG 237 (492)
Q Consensus 229 ~L~l~~~~~ 237 (492)
.|+++.+..
T Consensus 182 ~L~L~~N~i 190 (291)
T 1h6t_A 182 NLYLSKNHI 190 (291)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 988876644
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=2.3e-14 Score=125.42 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=85.1
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.. +| .+..+++|++|+++ ++.+..++ .+..+++|++|++++|.+....|..+
T Consensus 42 ~l~~L~~L~l~~n~---i~~-l~-~l~~l~~L~~L~l~-------~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANIN---VTD-LT-GIEYAHNIKDLTIN-------NIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESSC---CSC-CT-TGGGCTTCSEEEEE-------SCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEeccCCC---ccC-hH-HHhcCCCCCEEEcc-------CCCCCcch-hhhcCCCCCEEEeECCccCcccChhh
Confidence 56777788887776 443 44 36777778888887 66555553 56677778888887777333456667
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEe
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 235 (492)
..+++|++|++++|.+....|..++.+++|++|++++|.....+| .+..+++|+.|++..+
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 777777777777777554566667777777777777775334444 4555666666655444
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=6e-14 Score=143.31 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=87.0
Q ss_pred ccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccC
Q 011151 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGK 199 (492)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 199 (492)
..+++|+.|+++ ++.+..++ .+..+++|+.|+|++|. +..++. +..+++|+.|++++|. +..+| .+..
T Consensus 40 ~~L~~L~~L~l~-------~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~ 107 (605)
T 1m9s_A 40 NELNSIDQIIAN-------NSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKD 107 (605)
T ss_dssp HHHTTCCCCBCT-------TCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTT
T ss_pred hcCCCCCEEECc-------CCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhcc
Confidence 344555555555 55555554 35555555555555555 444443 5555555555555555 33333 3555
Q ss_pred CCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhccc
Q 011151 200 LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKK 279 (492)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~ 279 (492)
+++|++|++++|.+.. + ..+..+++|+.|+++.+.... + ..+..+
T Consensus 108 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-----l----------------------------~~l~~l 152 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-----I----------------------------TVLSRL 152 (605)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-----C----------------------------GGGGSC
T ss_pred CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-----c----------------------------hhhccc
Confidence 5555555555554432 1 234444445544444332211 0 113344
Q ss_pred CCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC
Q 011151 280 KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE 356 (492)
Q Consensus 280 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~ 356 (492)
++|+.|++++|.+.+.. . +..+++|+.|+|++|.+.. + + .+..+++|+.|+|++|.+..
T Consensus 153 ~~L~~L~Ls~N~l~~~~-------------~-l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIV-------------P-LAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSSCCCCCG-------------G-GTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCcCCCch-------------h-hccCCCCCEEECcCCCCCC--C-h-HHccCCCCCEEEccCCcCcC
Confidence 55666666665543221 1 4455666666666665555 3 2 35566666666666665443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=7.8e-14 Score=123.17 Aligned_cols=148 Identities=23% Similarity=0.362 Sum_probs=81.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+++.++.+..++... +..+++|+.|++++|. +....+..|..+++|++|+++ ++.+..++..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGV---FDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLS-------TNQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCCcEEEcCCCccCcCChhh---hcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECC-------CCcCCccCHh
Confidence 45666666666665544322 1255666666666665 444444445666666666666 5566555543
Q ss_pred -hhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccc
Q 011151 149 -IEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 149 -~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
+.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|.+. +.++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence 4566666666666666 4444443 4556666666666665 333333 3555666666666666332 2344
Q ss_pred cccccceEEeecc
Q 011151 226 NLRRVTKFVVGGG 238 (492)
Q Consensus 226 ~L~~L~l~~~~~~ 238 (492)
+|+.|.+..+...
T Consensus 166 ~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 166 GIRYLSEWINKHS 178 (208)
T ss_dssp TTHHHHHHHHHCT
T ss_pred CHHHHHHHHHhCC
Confidence 5555555544443
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=1.5e-13 Score=125.92 Aligned_cols=146 Identities=21% Similarity=0.186 Sum_probs=122.5
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+++.++.+..++ .+. .+++|+.|++++|. +.+ ++. +..+++|+.|+++ ++.+..+|..
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~L~~N~---i~~-~~~-l~~l~~L~~L~L~-------~N~l~~l~~~ 103 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQ----FFTNLKELHLSHNQ---ISD-LSP-LKDLTKLEELSVN-------RNRLKNLNGI 103 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCSSCCEEECC-------SSCCSCCTTC
T ss_pred CcCcEEECcCCCcccch-HHh----hCCCCCEEECCCCc---cCC-Chh-hccCCCCCEEECC-------CCccCCcCcc
Confidence 58899999999988765 444 88999999999998 666 444 8899999999999 8888888754
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
.. ++|++|++++|. +..++ .+..+++|++|++++|. +..++ .++.+++|++|++++|.+... ..+..+++|+
T Consensus 104 ~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp CC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred cc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 33 899999999999 77775 58899999999999998 66666 588999999999999987554 5688899999
Q ss_pred ccceEEeeccc
Q 011151 229 RVTKFVVGGGY 239 (492)
Q Consensus 229 ~L~l~~~~~~~ 239 (492)
.|++..+....
T Consensus 176 ~L~l~~N~~~~ 186 (263)
T 1xeu_A 176 WIDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEEC
T ss_pred EEeCCCCcccC
Confidence 99999887664
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=1.4e-13 Score=121.59 Aligned_cols=146 Identities=24% Similarity=0.296 Sum_probs=117.5
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~ 151 (492)
.+...++.+..+|..+ .++|+.|++++|. +....+..|..+++|++|+++ ++.+..++.. +.+
T Consensus 11 ~v~c~~~~l~~~p~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI------PAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLG-------GNKLQSLPNGVFNK 74 (208)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEecCCCccCCCCCC------CCCCcEEEcCCCc---cCcCChhhhcccccCcEEECC-------CCccCccChhhcCC
Confidence 5666667777766654 3689999999998 777666778899999999999 8888888765 688
Q ss_pred cCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.
T Consensus 75 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 9999999999999 7777654 6889999999999998 555554 4788999999999999876544445778888888
Q ss_pred cceEEee
Q 011151 230 VTKFVVG 236 (492)
Q Consensus 230 L~l~~~~ 236 (492)
|++..+.
T Consensus 153 L~l~~N~ 159 (208)
T 2o6s_A 153 IWLHDNP 159 (208)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 8877664
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=4e-14 Score=129.70 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=108.6
Q ss_pred cCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCC
Q 011151 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKL 200 (492)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 200 (492)
.+..+..++++ ++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|. +..++. +..+
T Consensus 17 ~l~~l~~l~l~-------~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLG-------KQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHT-------CSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred HHHHHHHHHhc-------CCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccC
Confidence 45556667777 67777766 56777888888888887 77776 57778888888888877 555555 7777
Q ss_pred CCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccC
Q 011151 201 RKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKK 280 (492)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 280 (492)
++|++|++++|.+.. +|. +.. +
T Consensus 85 ~~L~~L~L~~N~l~~-l~~-~~~--------------------------------------------------------~ 106 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN-LNG-IPS--------------------------------------------------------A 106 (263)
T ss_dssp SSCCEEECCSSCCSC-CTT-CCC--------------------------------------------------------S
T ss_pred CCCCEEECCCCccCC-cCc-ccc--------------------------------------------------------C
Confidence 888888887775421 111 000 3
Q ss_pred CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC
Q 011151 281 NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP 360 (492)
Q Consensus 281 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~ 360 (492)
+|+.|++++|.+++. ..+..+++|+.|++++|.+.. + + .+..+++|+.|++++|.+.+. +.
T Consensus 107 ~L~~L~L~~N~l~~~--------------~~l~~l~~L~~L~Ls~N~i~~--~-~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT--------------DSLIHLKNLEILSIRNNKLKS--I-V-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp SCCEEECCSSCCSBS--------------GGGTTCTTCCEEECTTSCCCB--C-G-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred cccEEEccCCccCCC--------------hhhcCcccccEEECCCCcCCC--C-h-HHccCCCCCEEECCCCcCcch-HH
Confidence 455555555554321 234556666666666666665 4 3 466777777777777765544 55
Q ss_pred CCCCCccceeeccccc
Q 011151 361 LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 361 l~~l~~L~~L~l~~~~ 376 (492)
+..+++|+.|++++|.
T Consensus 168 l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp STTCCCCCEEEEEEEE
T ss_pred hccCCCCCEEeCCCCc
Confidence 6777777888777776
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=9.7e-14 Score=118.05 Aligned_cols=128 Identities=23% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccc-cchhh
Q 011151 96 RGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEK-LPETL 173 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-lp~~~ 173 (492)
++|+.|++++|. +. +.+|..+..+++|++|+++ ++.+..+ ..+..+++|++|++++|. +.. +|..+
T Consensus 24 ~~L~~L~l~~n~---l~~~~i~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 91 (168)
T 2ell_A 24 AAVRELVLDNCK---SNDGKIEGLTAEFVNLEFLSLI-------NVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLA 91 (168)
T ss_dssp TSCSEEECCSCB---CBTTBCSSCCGGGGGCCEEEEE-------SSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHH
T ss_pred ccCCEEECCCCC---CChhhHHHHHHhCCCCCEEeCc-------CCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHH
Confidence 445555555554 33 2244444555555555555 4445444 444555555555555555 333 44444
Q ss_pred hcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCccccccc---ccccccccccccceEEee
Q 011151 174 CELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYLP---VGIGELINLRRVTKFVVG 236 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~ 236 (492)
..+++|++|++++|. +..+| ..+..+++|++|++++|.+....+ ..+..+++|+.|++..+.
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 445555555555555 33333 345555555555555554432222 234455555555555443
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=6.3e-14 Score=116.63 Aligned_cols=127 Identities=22% Similarity=0.222 Sum_probs=88.1
Q ss_pred CCCCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccc-cch
Q 011151 94 GLRGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEK-LPE 171 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-lp~ 171 (492)
..++++.|++++|. +. +.+|..+..+++|++|+++ ++.+..+ ..+.++++|++|++++|. +.. +|.
T Consensus 15 ~~~~l~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSR---SNEGKLEGLTDEFEELEFLSTI-------NVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCB---CBTTBCCSCCTTCTTCCEEECT-------TSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHH
T ss_pred CCccCeEEEccCCc---CChhHHHHHHhhcCCCcEEECc-------CCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHH
Confidence 34667777777776 55 3466666777788888887 6777666 567777788888888887 444 666
Q ss_pred hhhcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCccccccc---ccccccccccccceE
Q 011151 172 TLCELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYLP---VGIGELINLRRVTKF 233 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 233 (492)
.+..+++|++|++++|. +..+| ..++.+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66677888888888877 44443 667778888888888876644333 346667777776653
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=9.4e-14 Score=140.32 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=70.2
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
+++.+++.++.+..+|..+. ++|+.|++++|. +.. +| ..+++|++|+++ +|.+..+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~------~~L~~L~Ls~N~---l~~-ip---~~l~~L~~L~Ls-------~N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP------PQITVLEITQNA---LIS-LP---ELPASLEYLDAC-------DNRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC------TTCSEEECCSSC---CSC-CC---CCCTTCCEEECC-------SSCCSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhHc------CCCCEEECcCCC---Ccc-cc---cccCCCCEEEcc-------CCCCCCcch-h
Confidence 45566666666555444332 456666666665 333 33 234556666666 555555555 4
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
.+ +|++|++++|. ++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.+.. +|. +. ++|+.
T Consensus 119 ~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~ 184 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA 184 (571)
T ss_dssp CT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred hc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence 33 56666666665 444554 45566666666665 344554 34556666666665432 443 33 45555
Q ss_pred cceEEe
Q 011151 230 VTKFVV 235 (492)
Q Consensus 230 L~l~~~ 235 (492)
|+++.|
T Consensus 185 L~Ls~N 190 (571)
T 3cvr_A 185 LDVSTN 190 (571)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 554444
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=7.4e-14 Score=141.08 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=29.2
Q ss_pred cccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcc
Q 011151 139 KNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 139 ~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
++.+..+|..+. ++|++|++++|. ++.+| ..+++|++|++++|. +..+|. +.+ +|++|++++|.+
T Consensus 68 ~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 68 RLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp SSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSCC
T ss_pred CCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCcC
Confidence 444444444331 445555555554 44444 234445555555544 333444 332 455555555443
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.4e-13 Score=140.71 Aligned_cols=144 Identities=23% Similarity=0.281 Sum_probs=79.0
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
.++.|.+.++.+..++ .+. .+++|+.|++++|. +.+ ++. +..+++|+.|+|+ ++.+..+| .+
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~Ls~N~---l~~-~~~-l~~l~~L~~L~Ls-------~N~l~~l~-~l 105 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQ----YLPNVTKLFLNGNK---LTD-IKP-LTNLKNLGWLFLD-------ENKIKDLS-SL 105 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGG----GCTTCCEEECTTSC---CCC-CGG-GGGCTTCCEEECC-------SSCCCCCT-TS
T ss_pred CCCEEECcCCCCCCCh-HHc----cCCCCCEEEeeCCC---CCC-Chh-hccCCCCCEEECc-------CCCCCCCh-hh
Confidence 5555555555555433 222 56666666666665 444 222 5556666666666 55555544 45
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
..+++|++|+|++|. +..++ .+..+++|+.|++++|. +..+ ..+..+++|+.|++++|.+....| +..+++|+.
T Consensus 106 ~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 556666666666665 44443 35556666666666665 3333 335566666666666665543333 555556666
Q ss_pred cceEEeec
Q 011151 230 VTKFVVGG 237 (492)
Q Consensus 230 L~l~~~~~ 237 (492)
|+++.+..
T Consensus 180 L~Ls~N~i 187 (605)
T 1m9s_A 180 LYLSKNHI 187 (605)
T ss_dssp EECCSSCC
T ss_pred EECcCCCC
Confidence 65555543
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.3e-13 Score=117.22 Aligned_cols=131 Identities=25% Similarity=0.296 Sum_probs=111.5
Q ss_pred cceEEEEEEeecCC--CcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-c
Q 011151 69 KKILHLLLTLHRGA--SVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-I 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l 145 (492)
++++.+++.++.+. .++..+. .+++|+.|++++|. +... ..+..+++|++|+++ ++.+.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~----~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls-------~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA----EFVNLEFLSLINVG---LISV--SNLPKLPKLKKLELS-------ENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG----GGGGCCEEEEESSC---CCCC--SSCCCCSSCCEEEEE-------SCCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHHHH----hCCCCCEEeCcCCC---CCCh--hhhccCCCCCEEECc-------CCcCchHH
Confidence 68999999999988 5665554 89999999999998 6663 558899999999999 888888 7
Q ss_pred CchhhccCcCCEEEccCCCCccccc--hhhhcCCCCCeeecCcccccccccc----cccCCCCCcEEecCCCccccccc
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLP--ETLCELYNLERLNITSCNHLRELPQ----GIGKLRKLMYLDNDDTWFLRYLP 218 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~~~ 218 (492)
|..+.++++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~ 163 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED-QEAP 163 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS-CBCC
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh-hhcc
Confidence 7777789999999999999 78776 678999999999999999 566665 788999999999999966 3344
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=5.6e-13 Score=119.42 Aligned_cols=131 Identities=23% Similarity=0.341 Sum_probs=114.1
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
.+++.+++++|.+..++ ..+ ..+++|+.|++++|. +....+..|..+++|++|+|+ +|.+..++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls-------~N~l~~l~~ 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF----DSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLG-------TNQLTVLPS 105 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCT
T ss_pred CCCCEEEcCCCccCccCHHHh----hCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECC-------CCcCCccCh
Confidence 68999999999998853 334 389999999999998 777566778999999999999 899999876
Q ss_pred h-hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~ 215 (492)
. +..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|.+..
T Consensus 106 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 5 6899999999999999 88999999999999999999999 55555 458899999999999997643
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=4.8e-13 Score=119.03 Aligned_cols=132 Identities=23% Similarity=0.319 Sum_probs=112.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
+.++.|.+.+|.+..++.. .+..+++|+.|++++|. +....|..|..+++|++|+|+ ++.+..+|..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~---~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG---AFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLY-------GNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECTT---SSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECC-------SSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCHh---HhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECC-------CCcCCccCHh
Confidence 6899999999999876542 23489999999999998 788778889999999999999 9999999876
Q ss_pred -hhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccc
Q 011151 149 -IEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFL 214 (492)
Q Consensus 149 -~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 214 (492)
+.++++|++|++++|. +..+ |..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6889999999999999 6655 567889999999999999944444455889999999999999763
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=3.5e-13 Score=129.61 Aligned_cols=129 Identities=20% Similarity=0.216 Sum_probs=57.6
Q ss_pred CceEEEeccCCccccccccchhhc-cCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-hh
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFD-KLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TL 173 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~ 173 (492)
.++.|++++|. +....+..|. .+++|+.|+|+ ++.+..++. .+.++++|++|+|++|. +..++. .+
T Consensus 40 ~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLS-------HNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp TCSEEECCSSC---CCEECTTSSSSCCTTCCEEECC-------SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred CCCEEECCCCC---CCccChhhhhhcccccCEEECC-------CCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHh
Confidence 34455555554 4443333333 45555555555 444444442 24455555555555555 333332 24
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccc----cccccccccceEEeec
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGI----GELINLRRVTKFVVGG 237 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~ 237 (492)
..+++|++|++++|.+....|..+..+++|++|++++|.+.. +|..+ ..+++|+.|+++.+..
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCC
Confidence 445555555555555222223444455555555555554422 22221 3344555555444433
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=9.7e-13 Score=117.05 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=113.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++.+.+++|.+..++.. ..+.++++|+.|++++|. +....+..|..+++|++|+++ ++.+..++..
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLT-------SNRLENVQHK 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCGG
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECC-------CCccCccCHh
Confidence 5678999999999875321 112489999999999998 778667789999999999999 8999888764
Q ss_pred -hhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc
Q 011151 149 -IEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 149 -~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 215 (492)
+.++++|++|++++|. +..+ |..+..+++|++|++++|.+....|..+..+++|++|++++|.+..
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8899999999999999 6655 6678999999999999999555558889999999999999997653
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=5.1e-13 Score=114.47 Aligned_cols=129 Identities=23% Similarity=0.168 Sum_probs=86.5
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.. ++......++|++|+++ ++.+..+ ..+.++++|++|++++|. +..+|..+
T Consensus 17 ~~~~L~~L~l~~n~---l~~-i~~~~~~~~~L~~L~Ls-------~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYK---IPV-IENLGATLDQFDAIDFS-------DNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSC---CCS-CCCGGGGTTCCSEEECC-------SSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCCceEEEeeCCC---Cch-hHHhhhcCCCCCEEECC-------CCCCCcc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 66777777777776 444 34423333477777777 6777666 456777777777777777 66666543
Q ss_pred -hcCCCCCeeecCcccccccccc--cccCCCCCcEEecCCCccccccccc----ccccccccccceEEeec
Q 011151 174 -CELYNLERLNITSCNHLRELPQ--GIGKLRKLMYLDNDDTWFLRYLPVG----IGELINLRRVTKFVVGG 237 (492)
Q Consensus 174 -~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~ 237 (492)
..+++|++|++++|. +..+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|++..+..
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 677777777777777 566665 5677777777777777663 44443 66777777777766543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=3e-13 Score=112.54 Aligned_cols=124 Identities=27% Similarity=0.347 Sum_probs=105.7
Q ss_pred cceEEEEEEeecCC--CcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-c
Q 011151 69 KKILHLLLTLHRGA--SVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-I 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l 145 (492)
++++++++.++.+. .++..+. .+++|+.|++++|. +... ..+..+++|++|+++ ++.+.. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls-------~n~i~~~~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD----EFEELEFLSTINVG---LTSI--ANLPKLNKLKKLELS-------DNRVSGGL 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT----TCTTCCEEECTTSC---CCCC--TTCCCCTTCCEEECC-------SSCCCSCT
T ss_pred ccCeEEEccCCcCChhHHHHHHh----hcCCCcEEECcCCC---CCCc--hhhhcCCCCCEEECC-------CCcccchH
Confidence 68999999999988 4665544 89999999999998 6663 558899999999999 888888 7
Q ss_pred CchhhccCcCCEEEccCCCCccccc--hhhhcCCCCCeeecCcccccccccc----cccCCCCCcEEecCC
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLP--ETLCELYNLERLNITSCNHLRELPQ----GIGKLRKLMYLDNDD 210 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~ 210 (492)
|..+.++++|++|++++|. ++.+| ..+..+++|++|++++|. +...|. .+..+++|++|++++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 7777889999999999999 77664 779999999999999998 555554 688999999999863
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=8.3e-13 Score=127.03 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=115.1
Q ss_pred cceEEEEEEeecCCCcccccccCcc-CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVK-GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
..++.|++++|.+..++...+ . ++++|+.|++++|. +....+..|..+++|++|+|+ +|.+..++.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~---~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-------~N~l~~~~~ 105 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWT---PTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLS-------SNHLHTLDE 105 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSS---SSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECT
T ss_pred CCCCEEECCCCCCCccChhhh---hhcccccCEEECCCCc---CCccChhhccCCCCCCEEECC-------CCcCCcCCH
Confidence 567889999888887554432 3 67889999999888 777666778888999999998 888888765
Q ss_pred -hhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccc----cCCCCCcEEecCCCcccccccccc
Q 011151 148 -NIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGI----GKLRKLMYLDNDDTWFLRYLPVGI 221 (492)
Q Consensus 148 -~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~l 221 (492)
.+.++++|++|+|++|. +..+ |..+..+++|+.|++++|. +..+|..+ ..+++|++|++++|.+....+..+
T Consensus 106 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 183 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH
T ss_pred HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh
Confidence 47888999999999998 5555 5568888999999999988 66676654 568899999999987754433455
Q ss_pred ccccc--ccccceEEeec
Q 011151 222 GELIN--LRRVTKFVVGG 237 (492)
Q Consensus 222 ~~l~~--L~~L~l~~~~~ 237 (492)
..++. ++.|++..+..
T Consensus 184 ~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHSCHHHHTTEECCSSCE
T ss_pred hhccHhhcceEEecCCCc
Confidence 56655 35666665543
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=4.7e-12 Score=120.17 Aligned_cols=126 Identities=14% Similarity=0.195 Sum_probs=79.2
Q ss_pred CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCC
Q 011151 314 PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDT 392 (492)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 392 (492)
...++..+.+.+.-...+ . ......+++|+.++|.+|......+. +.++++|+.+++.++ ++.++...+.
T Consensus 200 ~~~~~~~l~~~~~l~~~~-~-~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~----- 270 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNAD-F-KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS----- 270 (329)
T ss_dssp CGGGCSEEEEEECCCHHH-H-HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----
T ss_pred CccccceEEEeeeecHHH-H-HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----
Confidence 345566666665432221 1 11122477788888887755443333 777788888888765 6666665544
Q ss_pred CCCccccccccc-ceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCC-cccCCCCCCCeEEE
Q 011151 393 DGSSIIAFPKLK-HLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP-DLLLQKTTLQKLLI 462 (492)
Q Consensus 393 ~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l 462 (492)
.+++|+ .+.+.+ +++.+.- .++..|++|+.|++++ +.++.++ ..+.++++|+.++.
T Consensus 271 ------~~~~L~~~l~l~~--~l~~I~~-----~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 ------NCGRLAGTLELPA--SVTAIEF-----GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ------TCTTCCEEEEECT--TCCEECT-----TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ------CChhccEEEEEcc--cceEEch-----hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 667777 777765 3444321 3566888999999877 5667665 46777888888763
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=3.6e-13 Score=141.07 Aligned_cols=115 Identities=20% Similarity=0.264 Sum_probs=68.8
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.++.|+.|++++|. +.. +|..+..+++|++|+|+ +|.+..+|..+.++++|++|+|++|. +..+|..+
T Consensus 222 ~l~~L~~L~Ls~n~---l~~-l~~~~~~l~~L~~L~Ls-------~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 289 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ---IFN-ISANIFKYDFLTRLYLN-------GNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAEL 289 (727)
T ss_dssp CCCCCCEEECTTSC---CSC-CCGGGGGCCSCSCCBCT-------TSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSG
T ss_pred cCCCCcEEECCCCC---CCC-CChhhcCCCCCCEEEee-------CCcCcccChhhhCCCCCCEEeCcCCc-CCccChhh
Confidence 55666666666665 443 33334456666666666 55666666666666666666666666 55666666
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGI 221 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l 221 (492)
+.+++|++|++++|. +..+|..++.+++|++|++++|.+.+.+|..+
T Consensus 290 ~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 666666666666665 45566666666666666666665554444443
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=2.3e-12 Score=112.06 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=98.6
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccch-hhccCCeeeEEecchhhhhhcccccccc-Cchh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQ-LFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNI 149 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~ 149 (492)
+.++++++.+..+|..+. +.++.|++++|. +....+. .|..+++|++|+++ ++.+..+ |..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~------~~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP------LHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELK-------RNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCSSCCSCCC------TTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECC-------SSCCCCBCTTTT
T ss_pred CEEEcCCCCcCcCccCCC------CCCCEEECCCCc---CCccCCccccccCCCCCEEECC-------CCCCCCcCHhHc
Confidence 467788888887777654 388889998887 6664443 47888889999998 8888776 5678
Q ss_pred hccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 215 (492)
.++++|++|++++|. +..++. .+..+++|++|++++|.+....|..+..+++|++|++++|.+..
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 888899999999988 555544 47788889999999888555667778888899999998887643
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.6e-12 Score=111.27 Aligned_cols=127 Identities=19% Similarity=0.160 Sum_probs=109.0
Q ss_pred cceEEEEEEeecCCCcccccccCccCC-CCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGL-RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
.+++.+++.++.+..++. +. .+ ++|+.|++++|. +.+ + ..+..+++|++|+++ +|.+..+|.
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~----~~~~~L~~L~Ls~N~---l~~-~-~~l~~l~~L~~L~Ls-------~N~l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LG----ATLDQFDAIDFSDNE---IRK-L-DGFPLLRRLKTLLVN-------NNRICRIGE 81 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GG----GGTTCCSEEECCSSC---CCE-E-CCCCCCSSCCEEECC-------SSCCCEECS
T ss_pred CCceEEEeeCCCCchhHH-hh----hcCCCCCEEECCCCC---CCc-c-cccccCCCCCEEECC-------CCcccccCc
Confidence 689999999999987643 33 44 499999999998 665 3 448999999999999 999999986
Q ss_pred hh-hccCcCCEEEccCCCCccccch--hhhcCCCCCeeecCccccccccccc----ccCCCCCcEEecCCCccc
Q 011151 148 NI-EKLLHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQG----IGKLRKLMYLDNDDTWFL 214 (492)
Q Consensus 148 ~~-~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~~~ 214 (492)
.+ .++++|++|++++|. ++.+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++++|...
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 54 899999999999999 788887 78999999999999999 6677774 889999999999998653
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.1e-12 Score=137.42 Aligned_cols=156 Identities=22% Similarity=0.192 Sum_probs=101.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCc--cccccccchhhccCCeeeEEecchhhhhhccccccccC
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDY--SWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 146 (492)
+.++++.+.++.+...+..+. ....|+.+.+..... +.+. ..++.|..++.|+.|+|+ ++.+..+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l----~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls-------~n~l~~l~ 240 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL----QHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLS-------NLQIFNIS 240 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECT-------TSCCSCCC
T ss_pred CccceEEeeCCCCCcchhhHh----hcCccCcccccCcccccccee-cChhhhccCCCCcEEECC-------CCCCCCCC
Confidence 568899998888877555444 333444443333211 1123 367778999999999999 99999999
Q ss_pred chhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
..+.++++|++|+|++|. +..+|..++++++|++|+|++|. +..+|..++.+++|++|++++|.+ ..+|..+..+++
T Consensus 241 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~ 317 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCN 317 (727)
T ss_dssp GGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTT
T ss_pred hhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCC
Confidence 988899999999999999 77999999999999999999999 668999999999999999999977 578988999999
Q ss_pred ccccceEEeeccc
Q 011151 227 LRRVTKFVVGGGY 239 (492)
Q Consensus 227 L~~L~l~~~~~~~ 239 (492)
|+.|++..|....
T Consensus 318 L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 318 LQFLGVEGNPLEK 330 (727)
T ss_dssp CCCEECTTSCCCS
T ss_pred ccEEeCCCCccCC
Confidence 9999998887653
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=3e-12 Score=111.24 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=105.0
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch--hhccCcCCEEEccCCCCcccc-chhhhc
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN--IEKLLHLKYLSLCGQREIEKL-PETLCE 175 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~--~~~l~~L~~L~L~~~~~~~~l-p~~~~~ 175 (492)
++++++++. +.. +|..+. ..|++|+++ ++.+..++.. +.++++|++|++++|. +..+ |..+..
T Consensus 11 ~~l~~s~~~---l~~-ip~~~~--~~l~~L~l~-------~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRG---LKE-IPRDIP--LHTTELLLN-------DNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSC---CSS-CCSCCC--TTCSEEECC-------SCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred CEEEcCCCC---cCc-CccCCC--CCCCEEECC-------CCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC
Confidence 678888887 555 554332 379999999 8899888753 8899999999999999 5555 778999
Q ss_pred CCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 176 LYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
+++|++|++++|.+....|..+..+++|++|++++|.+....|..+..+++|+.|++..+...
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999999999954455556889999999999999998888888999999999998887655
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=107.23 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=94.9
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~ 151 (492)
.++++++.+..+|..+. ++|+.|++++|. +.. +|..|..+++|++|+++ ++.+..++. .+.+
T Consensus 14 ~l~~~~~~l~~ip~~~~------~~l~~L~L~~n~---i~~-ip~~~~~l~~L~~L~Ls-------~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP------RDVTELYLDGNQ---FTL-VPKELSNYKHLTLIDLS-------NNRISTLSNQSFSN 76 (193)
T ss_dssp EEECTTSCCSSCCSCCC------TTCCEEECCSSC---CCS-CCGGGGGCTTCCEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEcCCCCCCcCCCCCC------CCCCEEECCCCc---Cch-hHHHhhcccCCCEEECC-------CCcCCEeCHhHccC
Confidence 56677777777776543 578888888887 555 66778888889999998 888888764 4888
Q ss_pred cCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcc
Q 011151 152 LLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 213 (492)
+++|++|++++|. +..++. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 8889999999888 666554 57888889999998888 555554 477888888888888865
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=1.3e-13 Score=120.65 Aligned_cols=142 Identities=19% Similarity=0.202 Sum_probs=106.4
Q ss_pred eEEEEEEee--cCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 71 ILHLLLTLH--RGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 71 ~~~l~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++...+.+. .++.++..+. .+++|+.|++++|. +.. +| .+..+++|+.|+++ ++.+..+|..
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~----~l~~L~~L~ls~n~---l~~-l~-~~~~l~~L~~L~l~-------~n~l~~l~~~ 88 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLS----TLKACKHLALSTNN---IEK-IS-SLSGMENLRILSLG-------RNLIKKIENL 88 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHH----HTTTCSEEECSEEE---ESC-CC-CHHHHTTCCEEEEE-------EEEECSCSSH
T ss_pred hheeEeccccCcHhhhhHHHh----cCCCCCEEECCCCC---Ccc-cc-ccccCCCCCEEECC-------CCCcccccch
Confidence 334444433 3444455555 88999999999887 666 56 58888999999999 8888888887
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccc--cccCCCCCcEEecCCCccccccccc------
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ--GIGKLRKLMYLDNDDTWFLRYLPVG------ 220 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~------ 220 (492)
+..+++|++|++++|. +..+| .+..+++|++|++++|. +..++. .+..+++|++|++++|.+....|..
T Consensus 89 ~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 89 DAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhcCCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 8888899999999998 77776 58888999999999988 555443 6788999999999999775554432
Q ss_pred ----ccccccccccc
Q 011151 221 ----IGELINLRRVT 231 (492)
Q Consensus 221 ----l~~l~~L~~L~ 231 (492)
+..+++|+.|+
T Consensus 166 ~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHCSSCSEEC
T ss_pred HHHHHHhCCCcEEEC
Confidence 55666666654
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=107.58 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=102.0
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccc-hhhhcCC
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLP-ETLCELY 177 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~ 177 (492)
++++++++. +.. +|..+ .++|++|+++ ++.+..+|..+.++++|++|++++|. +..++ ..+..++
T Consensus 13 ~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~-------~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKG---LKV-LPKGI--PRDVTELYLD-------GNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSC---CSS-CCSCC--CTTCCEEECC-------SSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CEEEcCCCC---CCc-CCCCC--CCCCCEEECC-------CCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCC
Confidence 567787777 555 45433 3579999999 99999999889999999999999999 66665 4588999
Q ss_pred CCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 178 NLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 178 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
+|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.|++..+...
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999999944444557899999999999999886544456888999999988877654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=1.7e-11 Score=104.99 Aligned_cols=127 Identities=26% Similarity=0.367 Sum_probs=102.3
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~ 150 (492)
+.+.+.++.+..+|..+ .++|+.|++++|. +.+..+..|..+++|++|+++ ++.+..++.. +.
T Consensus 10 ~~l~~~~~~l~~~p~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI------PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-------QNQIQSLPDGVFD 73 (177)
T ss_dssp TEEECCSSCCSSCCTTC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTTT
T ss_pred CEEEecCCCCccCCCCC------CCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECC-------CCcceEeChhHcc
Confidence 46777778887777544 3789999999998 677566667889999999999 8888888755 68
Q ss_pred ccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCccccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRY 216 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~ 216 (492)
++++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+...
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 89999999999999 7777654 6789999999999998 5566654 57899999999999976543
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.2e-11 Score=125.47 Aligned_cols=154 Identities=17% Similarity=0.118 Sum_probs=111.2
Q ss_pred cCCCCceEEE-eccCCccccccc--cchhhcc--CCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCcc
Q 011151 93 KGLRGLRSLL-VESDDYSWFSEV--LPQLFDK--LTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIE 167 (492)
Q Consensus 93 ~~~~~L~~L~-l~~~~~~~~~~~--~~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 167 (492)
..+++|+.|+ +..+....+... ....+.. ...|++|+++ ++.+..+|. +.++++|++|++++|. +.
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls-------~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~ 476 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-------HKDLTVLCH-LEQLLLVTHLDLSHNR-LR 476 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECT-------TSCCSSCCC-GGGGTTCCEEECCSSC-CC
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEec-------CCCCCCCcC-ccccccCcEeecCccc-cc
Confidence 3677788887 454432111110 0000111 1248899999 888988887 8999999999999999 77
Q ss_pred ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccc-cccccccccccccceEEeecccCCCcCcc
Q 011151 168 KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYL-PVGIGELINLRRVTKFVVGGGYDRARSLG 246 (492)
Q Consensus 168 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 246 (492)
.+|..++.+++|++|++++|. +..+| .++.+++|++|++++|.+.... |..+..+++|+.|+++.|......+....
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 999999999999999999998 66688 7899999999999999886665 88899999999999998877652222222
Q ss_pred ccccccccCCc
Q 011151 247 SLKKLNLLREC 257 (492)
Q Consensus 247 ~l~~L~~L~~l 257 (492)
....+++|+.+
T Consensus 555 l~~~lp~L~~L 565 (567)
T 1dce_A 555 LAEMLPSVSSI 565 (567)
T ss_dssp HHHHCTTCSEE
T ss_pred HHHHCcccCcc
Confidence 23335555544
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=4.8e-11 Score=113.12 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=59.6
Q ss_pred CCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC--CCCCCccc-eeeccccccceeecccccCCcCC
Q 011151 315 PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLE-SLYIEGMQSVKRVGNEFLGVESD 391 (492)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~ 391 (492)
+++|+++++++|.+.. ++...+..|.+|+.+++.++ ...++. +.++++|+ .+++.+ .++.++...+.
T Consensus 225 ~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~---- 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM---- 294 (329)
T ss_dssp CTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT----
T ss_pred cCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhh----
Confidence 5677777777766666 65566777777777777766 233332 66777777 777765 35666554443
Q ss_pred CCCCcccccccccceeccCc--ccccccccCccccccccCCCCcceEe
Q 011151 392 TDGSSIIAFPKLKHLKFYDM--EELEEWDFGTAIKGEIIIMPRLSFLE 437 (492)
Q Consensus 392 ~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~L~~L~ 437 (492)
.+++|+.+.+... ..+....|. .+++|+.++
T Consensus 295 -------~c~~L~~l~l~~n~i~~I~~~aF~--------~~~~L~~ly 327 (329)
T 3sb4_A 295 -------GCDNLRYVLATGDKITTLGDELFG--------NGVPSKLIY 327 (329)
T ss_dssp -------TCTTEEEEEECSSCCCEECTTTTC--------TTCCCCEEE
T ss_pred -------CCccCCEEEeCCCccCccchhhhc--------CCcchhhhc
Confidence 5677777776432 222222332 567777665
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=2.9e-11 Score=122.70 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=140.2
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCc----------cccccccchhhccCCeeeEEe-cchhhhhhc
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDY----------SWFSEVLPQLFDKLTCLRALK-LEVRQRWLC 138 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------~~~~~~~~~~~~~~~~L~~L~-L~~~~~~~~ 138 (492)
.+++++++.+.+..+|..+. ++++|+.|++.+|.. ....+..|..++.+++|+.|+ ++
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~----~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~------- 418 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELE----SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR------- 418 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHH----HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-------
T ss_pred cceeccCChhhHHhhHHHHH----HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-------
Confidence 44456666676666666665 777788877755421 113445677788899999998 55
Q ss_pred cccccccCc------hhhc--cCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCC
Q 011151 139 KNFIKKIPT------NIEK--LLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDD 210 (492)
Q Consensus 139 ~~~~~~l~~------~~~~--l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 210 (492)
.+.+..++. .+.. ...|++|++++|. ++.+|. ++.+++|+.|++++|. +..+|..++.+++|++|++++
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCS
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCC
Confidence 444433321 1111 2369999999999 888987 9999999999999999 669999999999999999999
Q ss_pred CcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCC--CCCChhhhhHhhhcccCCcceEec
Q 011151 211 TWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLG--GVSDAGEARRAELEKKKNLVELGL 287 (492)
Q Consensus 211 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l 287 (492)
|.+.. +| .+..+++|+.|+++.+...... .+..+..++.|+.+.+.+.. ..+. .....+..+++|+.|++
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~---~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLLNLQGNSLCQEEG---IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEEECTTSGGGGSSS---CTTHHHHHCTTCSEEEC
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEEEecCCcCCCCcc---HHHHHHHHCcccCccCC
Confidence 98854 67 8999999999999998876511 14566677777777665432 2221 11123455788888864
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=1.3e-13 Score=120.75 Aligned_cols=113 Identities=23% Similarity=0.192 Sum_probs=90.7
Q ss_pred cchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP 194 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp 194 (492)
+|..+..+++|++|+++ ++.+..+| .+.++++|++|++++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls-------~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALS-------TNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECS-------EEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECC-------CCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 44478889999999999 88888888 78889999999999998 77888878888899999999998 56666
Q ss_pred ccccCCCCCcEEecCCCccccccc-ccccccccccccceEEeecc
Q 011151 195 QGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 195 ~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 238 (492)
.+..+++|++|++++|.+....+ ..+..+++|+.|++..+...
T Consensus 110 -~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp -HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred -ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 57888899999999987643222 35777888888888776543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=1.8e-10 Score=98.55 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=98.5
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCCCccccchh-hhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKLPET-LCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~ 175 (492)
.+.++++++. +.. +|.. ..++|+.|+++ ++.+..++.. +.++++|++|++++|. +..+|.. +..
T Consensus 9 ~~~l~~~~~~---l~~-~p~~--~~~~l~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKG---LTS-VPTG--IPSSATRLELE-------SNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSC---CSS-CCTT--CCTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEecCCC---Ccc-CCCC--CCCCCcEEEeC-------CCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccC
Confidence 4677777776 555 4432 23689999999 8888888754 6889999999999999 7777654 688
Q ss_pred CCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 176 LYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.|++..+...
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 9999999999999 555554 4688999999999999886444444678899999988877654
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.08 E-value=5e-09 Score=101.83 Aligned_cols=308 Identities=13% Similarity=0.045 Sum_probs=173.5
Q ss_pred CccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCcccc
Q 011151 91 NVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKL 169 (492)
Q Consensus 91 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~l 169 (492)
+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+.+++. .+ +..++. .+.++.+|+.+.+..+ +..+
T Consensus 66 AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp-------~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIP-------DS-VKMIGRCTFSGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp TTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCC-------TT-CCEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred HhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeC-------CC-ceEccchhhcccccchhhcccCc--eeee
Confidence 4458899999998643 566566778899999999986 33 555653 4778888888776654 3333
Q ss_pred ch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccc
Q 011151 170 PE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSL 248 (492)
Q Consensus 170 p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 248 (492)
.. .+..+..++........ ..-...+.+|.+|+.+.+..+ ........+..+.+|+.+.+..+-..- ....+..+
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I-~~~~F~~~ 207 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKII-RDYCFAEC 207 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE-CTTTTTTC
T ss_pred cceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEe-Cchhhccc
Confidence 32 34444433333333222 111234677888888888654 222223345667777777664321110 01122233
Q ss_pred ccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCC
Q 011151 249 KKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRG 328 (492)
Q Consensus 249 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 328 (492)
..|..+ .+... ... .......+.+|+.+.+.... + ..-...+..+..|+.+.+..+..
T Consensus 208 ~~L~~i---~~~~~--~~~----i~~~~~~~~~l~~i~ip~~~-~------------~i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 208 ILLENM---EFPNS--LYY----LGDFALSKTGVKNIIIPDSF-T------------ELGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp TTCCBC---CCCTT--CCE----ECTTTTTTCCCCEEEECTTC-C------------EECSSTTTTCSSCCEEEECCTTC
T ss_pred ccccee---ecCCC--ceE----eehhhcccCCCceEEECCCc-e------------ecccccccccccceeEEcCCCcc
Confidence 333222 21110 000 00112234567777665332 0 00012345567788888866543
Q ss_pred CccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceec
Q 011151 329 RRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKF 408 (492)
Q Consensus 329 ~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 408 (492)
. +....+..+..++.+......... ..+..+.+|+.+.+..+ ++.++...+. .+.+|+.+.+
T Consensus 266 ~---i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF~-----------~c~~L~~i~l 327 (394)
T 4fs7_A 266 R---IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAFE-----------SCTSLVSIDL 327 (394)
T ss_dssp E---ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTTT-----------TCTTCCEECC
T ss_pred e---eeccccccccccceeccCceeecc--ccccccccccccccccc--cceechhhhc-----------CCCCCCEEEe
Confidence 3 325566677788877776543211 12566778888888643 5666655443 5677888777
Q ss_pred cCcccccccccCccccccccCCCCcceEeecCCCCcccCC-cccCCCCCCCeEEEeCC
Q 011151 409 YDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP-DLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c 465 (492)
.+ .++.+.- .++..|.+|+.+.+..+ ++.|+ ..+.+|++|+.+++..+
T Consensus 328 p~--~v~~I~~-----~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 328 PY--LVEEIGK-----RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CT--TCCEECT-----TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CC--cccEEhH-----HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 43 2333321 35667888999888653 66664 45778889999988754
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=4.6e-10 Score=95.55 Aligned_cols=100 Identities=20% Similarity=0.349 Sum_probs=58.3
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-CchhhccCcCCEEEccCCCCccccchh-hhcC
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEKLLHLKYLSLCGQREIEKLPET-LCEL 176 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l 176 (492)
+.++++++. +.. +|..+. ++|++|+|+ ++.+..+ |..+.++++|++|+|++|. +..+|.. +.++
T Consensus 15 ~~l~~~~n~---l~~-iP~~~~--~~L~~L~Ls-------~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIR---LAS-VPAGIP--TDKQRLWLN-------NNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSC---CSS-CCSCCC--TTCSEEECC-------SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cEEEeCCCC---CCc-cCCCcC--CCCcEEEeC-------CCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCc
Confidence 455555554 333 333222 556666666 6666655 3346666666666666666 5555554 3566
Q ss_pred CCCCeeecCccccccccccc-ccCCCCCcEEecCCCcc
Q 011151 177 YNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 213 (492)
++|++|++++|. +..+|.. +..+++|++|++++|.+
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 666666666666 4444443 66666777777776654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=7.3e-10 Score=94.29 Aligned_cols=100 Identities=25% Similarity=0.363 Sum_probs=67.5
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~ 150 (492)
+.++++++.+..+|..+. ++|+.|++++|. +.+..|..|..+++|++|+|+ +|.+..+|.. +.
T Consensus 15 ~~l~~~~n~l~~iP~~~~------~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP------TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFN-------SNKLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTTTTT
T ss_pred cEEEeCCCCCCccCCCcC------CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECC-------CCCCCccChhHhC
Confidence 356666666666665442 667777777776 666556666777777777777 6777776654 46
Q ss_pred ccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCN 188 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 188 (492)
++++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 79 ~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 67777777777777 6666654 6667777777777776
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=5.3e-09 Score=101.41 Aligned_cols=240 Identities=12% Similarity=0.137 Sum_probs=131.5
Q ss_pred CCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCCCccccch-h
Q 011151 95 LRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKLPE-T 172 (492)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~-~ 172 (492)
+..++.+.+... ++.+-..+|.++ +|+.+.+. .+ +..++.. |.+ .+|+.+.+.. . +..++. .
T Consensus 112 ~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~-------~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~a 175 (401)
T 4fdw_A 112 LKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLN-------EG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDI 175 (401)
T ss_dssp CSSCSEEECCTT----CCEECTTTTTTC-CCSEEECC-------TT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSST
T ss_pred cCCccEEEECCc----cCEehHhhcccC-CccEEEeC-------CC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHH
Confidence 355555555443 444445556554 46666665 33 5555433 444 3566666665 2 444443 3
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
+.+|.+|+.+++..|. +..++...-.+.+|+.+.+..+ +...-...+..+++|+.+.+..+-..- ....+.. .
T Consensus 176 F~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I-~~~aF~~----~ 248 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTI-GQEAFRE----S 248 (401)
T ss_dssp TTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEE-CTTTTTT----C
T ss_pred hhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCc-ccccccc----C
Confidence 5666677777776665 4555544333566666666543 322223345566666666554321110 0111111 2
Q ss_pred ccCCceEec-CCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcc
Q 011151 253 LLRECSIRG-LGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN 331 (492)
Q Consensus 253 ~L~~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 331 (492)
.|+.+.+.. +..+.. ..+.+|++|+.+.+..+.+..... ...-...+..|++|+.+.+.. ....
T Consensus 249 ~L~~i~lp~~i~~I~~------~aF~~c~~L~~l~l~~~~~~~~~~-------~~I~~~aF~~c~~L~~l~l~~-~i~~- 313 (401)
T 4fdw_A 249 GITTVKLPNGVTNIAS------RAFYYCPELAEVTTYGSTFNDDPE-------AMIHPYCLEGCPKLARFEIPE-SIRI- 313 (401)
T ss_dssp CCSEEEEETTCCEECT------TTTTTCTTCCEEEEESSCCCCCTT-------CEECTTTTTTCTTCCEECCCT-TCCE-
T ss_pred CccEEEeCCCccEECh------hHhhCCCCCCEEEeCCccccCCcc-------cEECHHHhhCCccCCeEEeCC-ceEE-
Confidence 344443321 111221 457788888888887765321100 001123466788899888873 3444
Q ss_pred ccCchhhhccccccEEEEecccCCCcCC--CCCCCCccceeeccccc
Q 011151 332 VVPRNWVMSLTNLRALLLKNCRNCEHLP--PLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 332 ~l~~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~ 376 (492)
+....+..|.+|+.+.|..+ . ..++ .+.++ +|+.+++.++.
T Consensus 314 -I~~~aF~~c~~L~~l~lp~~-l-~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 314 -LGQGLLGGNRKVTQLTIPAN-V-TQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -ECTTTTTTCCSCCEEEECTT-C-CEECTTSSSSS-CCCEEEECCSS
T ss_pred -EhhhhhcCCCCccEEEECcc-c-cEEcHHhCCCC-CCCEEEEcCCC
Confidence 65667888899999999665 2 2232 37777 89999998875
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=9.1e-10 Score=93.35 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=73.5
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-CchhhccCcCCEEEccCCCCccccchh-hhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEKLLHLKYLSLCGQREIEKLPET-LCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~ 175 (492)
.+.++++++. +.. +|..+ .+.|++|+|+ ++.+..+ |..+.++++|++|++++|. +..+|.. +..
T Consensus 11 ~~~l~~s~n~---l~~-ip~~~--~~~l~~L~L~-------~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKS---LAS-VPTGI--PTTTQVLYLY-------DNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSC---CSS-CCSCC--CTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEeCCCC---cCc-cCccC--CCCCcEEEcC-------CCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccC
Confidence 4677887776 555 44433 3678888888 7777777 4457788888888888888 6666654 567
Q ss_pred CCCCCeeecCcccccccccc-cccCCCCCcEEecCCCccc
Q 011151 176 LYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFL 214 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 214 (492)
+++|++|++++|. +..+|. .+..+++|++|++++|.+.
T Consensus 77 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888888888887 555554 4777888888888888653
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.2e-09 Score=92.58 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=89.1
Q ss_pred eEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-h
Q 011151 71 ILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-I 149 (492)
Q Consensus 71 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~ 149 (492)
.+.++++++.+..+|..+. +.|+.|++++|. +.+..|..|..+++|++|+|+ +|.+..+|.. +
T Consensus 11 ~~~l~~s~n~l~~ip~~~~------~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~~f 74 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP------TTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLD-------NNQLTVLPAGVF 74 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC------TTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTT
T ss_pred CCEEEeCCCCcCccCccCC------CCCcEEEcCCCc---CCccChhhhcCcccCCEEECC-------CCCcCccChhhc
Confidence 3478888899988887653 889999999998 888678889999999999999 9999998865 6
Q ss_pred hccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNH 189 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 189 (492)
.++++|++|++++|. +..+|.. +..+++|++|++++|.+
T Consensus 75 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 899999999999999 7777764 88999999999999983
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=8.9e-09 Score=99.82 Aligned_cols=236 Identities=14% Similarity=0.125 Sum_probs=131.3
Q ss_pred cCCeeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccc-cccc
Q 011151 121 KLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLREL-PQGI 197 (492)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~l-p~~~ 197 (492)
.+..++.+.+. +.+..++.. |.++ +|+.+.+..+ +..++.. +.+ .+|+.+.+.. . +..+ +..+
T Consensus 111 ~~~~l~~i~ip--------~~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF 176 (401)
T 4fdw_A 111 ILKGYNEIILP--------NSVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIF 176 (401)
T ss_dssp ECSSCSEEECC--------TTCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTT
T ss_pred ecCCccEEEEC--------CccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHh
Confidence 34566666664 345555543 5554 6888887665 5555543 444 3688888775 2 3433 3457
Q ss_pred cCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEec-CCCCCChhhhhHhhh
Q 011151 198 GKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRG-LGGVSDAGEARRAEL 276 (492)
Q Consensus 198 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~-~~~~~~~~~~~~~~l 276 (492)
.+|++|+.+++.++.+ ..++...-...+|+.+.+... ... -.-..+..+..|+.+.+.. +..+.. ..+
T Consensus 177 ~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~l~lp~~-l~~---I~~~aF~~~~~L~~l~l~~~l~~I~~------~aF 245 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKI-TKLPASTFVYAGIEEVLLPVT-LKE---IGSQAFLKTSQLKTIEIPENVSTIGQ------EAF 245 (401)
T ss_dssp TTCTTCCEEECTTSCC-SEECTTTTTTCCCSEEECCTT-CCE---ECTTTTTTCTTCCCEECCTTCCEECT------TTT
T ss_pred hCcccCCeeecCCCcc-eEechhhEeecccCEEEeCCc-hhe---ehhhHhhCCCCCCEEecCCCccCccc------ccc
Confidence 7788888888877755 333433223566776665422 111 1112233444455444432 111111 223
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcc---ccCchhhhccccccEEEEeccc
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALLLKNCR 353 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~L~~~~ 353 (492)
.+ .+|+.+.+..+ ++. .-...+..+++|+.+.+.++..... .++...+..|++|+.+.+..+
T Consensus 246 ~~-~~L~~i~lp~~-i~~------------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~- 310 (401)
T 4fdw_A 246 RE-SGITTVKLPNG-VTN------------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES- 310 (401)
T ss_dssp TT-CCCSEEEEETT-CCE------------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-
T ss_pred cc-CCccEEEeCCC-ccE------------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-
Confidence 34 46777777432 211 1123456677888888877655400 143566777888888888743
Q ss_pred CCCcCCC--CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCc
Q 011151 354 NCEHLPP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDM 411 (492)
Q Consensus 354 ~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 411 (492)
...++. +.++++|+.+.|..+ ++.++...+. .+ +|+.+.+.+.
T Consensus 311 -i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~-----------~~-~L~~l~l~~n 355 (401)
T 4fdw_A 311 -IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN-----------NT-GIKEVKVEGT 355 (401)
T ss_dssp -CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS-----------SS-CCCEEEECCS
T ss_pred -eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC-----------CC-CCCEEEEcCC
Confidence 233322 667788888888543 5666554443 55 7888877664
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.94 E-value=9.7e-09 Score=99.80 Aligned_cols=318 Identities=12% Similarity=0.047 Sum_probs=190.4
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-c
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-T 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~ 147 (492)
.+++.+.+.. .+..+.. .+|.+|++|+.+.+..+ +..+-..+|..+..|+.+.+. . .+..+. .
T Consensus 71 ~~L~~i~lp~-~i~~I~~---~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p-------~-~l~~i~~~ 134 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGE---FAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLP-------L-MLKSIGVE 134 (394)
T ss_dssp TTEEEEECCT-TCCEECT---TTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCC-------T-TCCEECTT
T ss_pred CCceEEEeCC-CccCcch---hHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhccc-------C-ceeeecce
Confidence 5788887753 3443332 24459999999999754 555556778999999988775 3 244443 3
Q ss_pred hhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.|.++..+......... .+ ...+.++.+|+.+.+.++. ...-...+.++.+|+.+.+..+ +.......+..+..
T Consensus 135 aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeecccccccccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 35555444433333222 22 2347788889999887653 2222345778888888888765 32222334566777
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecC-CCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGL-GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRES 305 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 305 (492)
|+.+.+....... ...... ...|+.+.+... ..+.. ..+..+..++.+.+..+...
T Consensus 210 L~~i~~~~~~~~i--~~~~~~---~~~l~~i~ip~~~~~i~~------~~f~~~~~l~~~~~~~~~~~------------ 266 (394)
T 4fs7_A 210 LENMEFPNSLYYL--GDFALS---KTGVKNIIIPDSFTELGK------SVFYGCTDLESISIQNNKLR------------ 266 (394)
T ss_dssp CCBCCCCTTCCEE--CTTTTT---TCCCCEEEECTTCCEECS------STTTTCSSCCEEEECCTTCE------------
T ss_pred cceeecCCCceEe--ehhhcc---cCCCceEEECCCceeccc------ccccccccceeEEcCCCcce------------
Confidence 7776554332211 111111 123333333211 11111 34667888888888765411
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCC--CCCCCCccceeeccccccceeecc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP--PLGKLPSLESLYIEGMQSVKRVGN 383 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~~l~~~~~ 383 (492)
.....+..+..++.+...... ++...+..+.+|+.+.+..+ ...++ .+.++.+|+.++|.+. ++.++.
T Consensus 267 -i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~ 336 (394)
T 4fs7_A 267 -IGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK 336 (394)
T ss_dssp -ECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT
T ss_pred -eeccccccccccceeccCcee-----eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH
Confidence 112235567788888776543 32455678899999999765 22332 3778899999999643 677766
Q ss_pred cccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeE
Q 011151 384 EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKL 460 (492)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L 460 (492)
..+. .+.+|+++.+... ++.+.- .++..|++|+.+.+..+ ++.+...+.++++|+.+
T Consensus 337 ~aF~-----------~c~~L~~i~lp~~--l~~I~~-----~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFR-----------GCTSLSNINFPLS--LRKIGA-----NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTT-----------TCTTCCEECCCTT--CCEECT-----TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred Hhcc-----------CCCCCCEEEECcc--ccEehH-----HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 5544 6778888887542 443321 35678999999999763 45555567777777654
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=6.6e-09 Score=99.70 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=58.2
Q ss_pred CCceEEEeccCCcccccccc----chhhc-cCCeeeEEecchhhhhhcccccccc--CchhhccCcCCEEEccCCCCccc
Q 011151 96 RGLRSLLVESDDYSWFSEVL----PQLFD-KLTCLRALKLEVRQRWLCKNFIKKI--PTNIEKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~----~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~l--~~~~~~l~~L~~L~L~~~~~~~~ 168 (492)
+.|+.|++++|. +.... ...+. ..++|+.|+|+ ++.+... ......+.+|++|+|++|. ++.
T Consensus 72 ~~L~~L~Ls~n~---l~~~~~~~l~~~L~~~~~~L~~L~Ls-------~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~ 140 (372)
T 3un9_A 72 SSLRQLNLAGVR---MTPVKCTVVAAVLGSGRHALDEVNLA-------SCQLDPAGLRTLLPVFLRARKLGLQLNS-LGP 140 (372)
T ss_dssp TTCCEEECTTSC---CCHHHHHHHHHHHSSCSSCEEEEECT-------TCCCCHHHHHHTHHHHHTEEEEECCSSC-CCH
T ss_pred hhCCEEEecCCC---CCHHHHHHHHHHHhhCCCCceEEEec-------CCCCCHHHHHHHHHHHHhccHhhcCCCC-CCH
Confidence 567777777776 33221 22222 22567777777 5555431 1223345567777777776 432
Q ss_pred c-chhh-----hcCCCCCeeecCcccccc----cccccccCCCCCcEEecCCCcc
Q 011151 169 L-PETL-----CELYNLERLNITSCNHLR----ELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 169 l-p~~~-----~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
. ...+ ....+|++|++++|.+.. .++..+..+++|++|++++|.+
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence 2 1122 235667777777776322 2344445667777777777754
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=4.2e-08 Score=93.55 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=36.8
Q ss_pred hccCCeeeEEecchhhhhhcc-ccccccC-chhhccCcCCEEEccCCCCccccc-hhhhcCCCCCeeecCcccccccccc
Q 011151 119 FDKLTCLRALKLEVRQRWLCK-NFIKKIP-TNIEKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQ 195 (492)
Q Consensus 119 ~~~~~~L~~L~L~~~~~~~~~-~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~ 195 (492)
+..+++|+.|+|+ + |.+..++ ..+.++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|.
T Consensus 27 l~~~~~L~~L~l~-------~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 97 (347)
T 2ifg_A 27 LPGAENLTELYIE-------NQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSW 97 (347)
T ss_dssp SCSCSCCSEEECC-------SCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCS
T ss_pred CCCCCCeeEEEcc-------CCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCH
Confidence 4444444445544 3 4444444 234444455555555444 33222 234444555555555444 333333
Q ss_pred cccCCCCCcEEecCCCc
Q 011151 196 GIGKLRKLMYLDNDDTW 212 (492)
Q Consensus 196 ~~~~l~~L~~L~l~~~~ 212 (492)
.+.....|+.|++.+|.
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 22222225555555443
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=4.9e-07 Score=87.68 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=67.7
Q ss_pred cCCC-CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccc---cccccCc-hhhccCcCCEEEccCCCCcc
Q 011151 93 KGLR-GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKN---FIKKIPT-NIEKLLHLKYLSLCGQREIE 167 (492)
Q Consensus 93 ~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~l~~-~~~~l~~L~~L~L~~~~~~~ 167 (492)
.+++ .|+++.+-.. ++.+-..+|.+|.+|+.+.+. .+ .+..+.. .|.++.+|+.+.+..+ +.
T Consensus 60 ~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~-------~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~ 126 (394)
T 4gt6_A 60 CNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQ-------DNKPSCVKKIGRQAFMFCSELTDIPILDS--VT 126 (394)
T ss_dssp TTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEG-------GGCCCCCCEECTTTTTTCTTCCBCGGGTT--CS
T ss_pred cCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeec-------CCCCCeeeEechhhchhcccceeeccCCc--cc
Confidence 3664 5888888653 566566778888888888886 43 2555543 3677778887777654 44
Q ss_pred ccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCC
Q 011151 168 KLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 168 ~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 211 (492)
.++. .+..+.+|+.+.+..+. ...-...+..+.+|+.+.+..+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT
T ss_pred eehhhhhhhhccccccccccee-eeecccceecccccccccccce
Confidence 4443 36677888888886543 2222334667778888777654
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.66 E-value=1.8e-06 Score=83.73 Aligned_cols=107 Identities=9% Similarity=0.131 Sum_probs=53.1
Q ss_pred ccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccc
Q 011151 92 VKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLP 170 (492)
Q Consensus 92 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp 170 (492)
|.+|.+|+.+.+..+.-..+..+-..+|..+..|+.+.+. . .+..++. .+.++.+|+.+.+... +..++
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~-------~-~~~~I~~~aF~~c~~L~~i~lp~~--~~~I~ 152 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL-------D-SVTEIDSEAFHHCEELDTVTIPEG--VTSVA 152 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG-------T-TCSEECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC-------C-ccceehhhhhhhhcccccccccce--eeeec
Confidence 3466666666666543223444344556666666665554 2 2344432 3556666666666543 23332
Q ss_pred h-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCC
Q 011151 171 E-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDD 210 (492)
Q Consensus 171 ~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 210 (492)
. .+..+.+|+.+.+..+ +..+....-...+|+.+.+..
T Consensus 153 ~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred ccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 2 3555666666666543 222222222234555555543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=6.7e-08 Score=92.11 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=84.7
Q ss_pred EEEEEee-cCCCcccccccCccCCCCceEEEecc-CCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hh
Q 011151 73 HLLLTLH-RGASVPISIWGNVKGLRGLRSLLVES-DDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NI 149 (492)
Q Consensus 73 ~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~ 149 (492)
.++..++ .+..+|. +. .+++|+.|++++ |. +....+..|..+++|+.|+|+ +|.+..++. .|
T Consensus 12 ~v~~~~~n~l~~ip~-l~----~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LP----GAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIV-------KSGLRFVAPDAF 76 (347)
T ss_dssp CEECCSSCCCTTTTT-SC----SCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECC-------SSCCCEECTTGG
T ss_pred EEEcCCCCCCCccCC-CC----CCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECC-------CCccceeCHHHh
Confidence 3566666 7777777 65 889999999996 87 888677889999999999999 889988765 58
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNH 189 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 189 (492)
.++++|++|+|++|. +..+|..+.....|+.|++.+|.+
T Consensus 77 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp GSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence 999999999999999 888887655554599999999984
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=1.4e-08 Score=84.84 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=37.9
Q ss_pred ccccccceeccCcccccccccCccccccccC----CCCcceEeecCCCCccc--CCcccCCCCCCCeEEEeCCCchhh
Q 011151 399 AFPKLKHLKFYDMEELEEWDFGTAIKGEIII----MPRLSFLEISGCCKLKA--LPDLLLQKTTLQKLLIGRCPILEE 470 (492)
Q Consensus 399 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~ 470 (492)
.+++|++|++++|..+++..+. .+.. +++|++|+|++|+.+++ + ..+..+++|+.|++++|+.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 5556666666666655554431 1222 24677777777766664 2 2344567777777777776554
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=1.6e-08 Score=97.08 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=112.4
Q ss_pred cceEEEEEEeecCCCcc-cccccCcc-CCCCceEEEeccCCccccccc-cchhhccCCeeeEEecchhhhhhcccccccc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVK-GLRGLRSLLVESDDYSWFSEV-LPQLFDKLTCLRALKLEVRQRWLCKNFIKKI 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l 145 (492)
..++.++++++.+.... ..+...+. ..+.|+.|++++|. +... .......+++|+.|+|+ +|.++..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~---l~~~~~~~l~~~L~~L~~L~Ls-------~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ---LDPAGLRTLLPVFLRARKLGLQ-------LNSLGPE 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC---CCHHHHHHTHHHHHTEEEEECC-------SSCCCHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC---CCHHHHHHHHHHHHhccHhhcC-------CCCCCHH
Confidence 57889999999887522 22222222 34799999999998 4332 23323456789999999 7877653
Q ss_pred C-----chh-hccCcCCEEEccCCCCccc-----cchhhhcCCCCCeeecCcccccc----cccccccCCCCCcEEecCC
Q 011151 146 P-----TNI-EKLLHLKYLSLCGQREIEK-----LPETLCELYNLERLNITSCNHLR----ELPQGIGKLRKLMYLDNDD 210 (492)
Q Consensus 146 ~-----~~~-~~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~ 210 (492)
. ..+ ...++|++|+|++|. ++. ++..+..+++|++|++++|.+.. .++..+..+++|++|++++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 2 222 246789999999998 543 45556788999999999998433 3455677788999999999
Q ss_pred Cccccc----ccccccccccccccceEEeeccc
Q 011151 211 TWFLRY----LPVGIGELINLRRVTKFVVGGGY 239 (492)
Q Consensus 211 ~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~ 239 (492)
|.+... +...+...++|+.|+++.|....
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 987543 33445567889999998887653
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=2.5e-08 Score=83.41 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=64.0
Q ss_pred ccccEEEEecccCCCc-CCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccC
Q 011151 342 TNLRALLLKNCRNCEH-LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFG 420 (492)
Q Consensus 342 ~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 420 (492)
.+|+.|++++|.+... +..+..+++|++|+|++|..+++.+....+.. ....++|++|++++|+++++-.+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-------~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-------ENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-------HHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-------ccccCCCCEEEcCCCCcCCHHHHH
Confidence 4578888888764432 33366788888888888887766443332210 001357899999999888876652
Q ss_pred ccccccccCCCCcceEeecCCCCccc
Q 011151 421 TAIKGEIIIMPRLSFLEISGCCKLKA 446 (492)
Q Consensus 421 ~~~~~~~~~~~~L~~L~l~~c~~l~~ 446 (492)
.+..+++|++|+|++|+.+++
T Consensus 134 -----~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 -----ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -----HGGGCTTCCEEEEESCTTCCC
T ss_pred -----HHhcCCCCCEEECCCCCCCCc
Confidence 345789999999999998886
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=2.3e-07 Score=88.29 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=73.3
Q ss_pred cchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccc--ccccccccceEEeecccCCCcCcc
Q 011151 169 LPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG--ELINLRRVTKFVVGGGYDRARSLG 246 (492)
Q Consensus 169 lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~ 246 (492)
+...+..+++|+.|.+++|... .++. + .+++|++|++..|.+.......+. .+++|+.|.++...........+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4444566777777777766322 3333 3 267777777776654332222232 567777776643211100000011
Q ss_pred ccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeec
Q 011151 247 SLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEY 326 (492)
Q Consensus 247 ~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 326 (492)
.+.. + .....+++|+.|++..|.+.+ ...........+++|++|+|+.|
T Consensus 241 ~l~~---~-------------------l~~~~~p~Lr~L~L~~~~i~~---------~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 241 VFRP---L-------------------FSKDRFPNLKWLGIVDAEEQN---------VVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp GTGG---G-------------------SCTTTCTTCCEEEEESCTTHH---------HHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHH---H-------------------HhcCCCCCcCEEeCCCCCCch---------HHHHHHHhCccCCCCCEEECCCC
Confidence 1100 0 001245677777777666321 00111112234567777777766
Q ss_pred CCCccc---cCchhhhccccccEEEEecccCC
Q 011151 327 RGRRNV---VPRNWVMSLTNLRALLLKNCRNC 355 (492)
Q Consensus 327 ~~~~~~---l~~~~~~~l~~L~~L~L~~~~~~ 355 (492)
.+.... + +..+..+++|+.|++++|.+.
T Consensus 290 ~L~d~G~~~L-~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 290 VLTDEGARLL-LDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CCBHHHHHHH-HTTHHHHTTCSEEECCSBBCC
T ss_pred CCChHHHHHH-HhhcccCCcceEEECCCCcCC
Confidence 554421 1 122345667777777766443
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.35 E-value=1.7e-05 Score=76.35 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=53.7
Q ss_pred cCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCC--CCCCCCccceeeccccccceeecccccCCc
Q 011151 312 LGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP--PLGKLPSLESLYIEGMQSVKRVGNEFLGVE 389 (492)
Q Consensus 312 l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 389 (492)
+..+..|+.+.+..+ ... +....+..+.+|+.+.+..+ ...++ .+..+++|+.+.+.++. ++.++...+.
T Consensus 236 f~~~~~L~~i~lp~~-v~~--I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~-- 307 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTS--IGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFM-- 307 (379)
T ss_dssp TTTCSSCCEEEECTT-CCE--ECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTT--
T ss_pred ccCCccceEEEcCCC-ccE--eCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhhhc--
Confidence 345566666666543 222 32445556666777766543 11222 25566677777765433 4555544333
Q ss_pred CCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecC
Q 011151 390 SDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG 440 (492)
Q Consensus 390 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (492)
.+.+|+++.+-. +++.+.- .++..|++|+.+.+..
T Consensus 308 ---------~c~~L~~i~lp~--~l~~I~~-----~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 308 ---------DCVKLSSVTLPT--ALKTIQV-----YAFKNCKALSTISYPK 342 (379)
T ss_dssp ---------TCTTCCEEECCT--TCCEECT-----TTTTTCTTCCCCCCCT
T ss_pred ---------CCCCCCEEEcCc--cccEEHH-----HHhhCCCCCCEEEECC
Confidence 455666666532 1322221 2344566666666643
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=1.1e-07 Score=90.41 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=36.7
Q ss_pred ccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhc-cccccEEEEeccc
Q 011151 278 KKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMS-LTNLRALLLKNCR 353 (492)
Q Consensus 278 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~-l~~L~~L~L~~~~ 353 (492)
.+++|++|+++.|.+++. ....+...+..+++|+.|++++|.+.... ...+.. + ...++++.+.
T Consensus 277 ~~~~L~~LdLs~n~L~d~--------G~~~L~~~L~~l~~L~~L~L~~n~i~d~~--~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDE--------GARLLLDHVDKIKHLKFINMKYNYLSDEM--KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHH--------HHHHHHTTHHHHTTCSEEECCSBBCCHHH--HHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChH--------HHHHHHhhcccCCcceEEECCCCcCCHHH--HHHHHHHc--CCEEEecCCc
Confidence 467788888877775421 12234444455678888888888766532 222332 2 2456666654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=1.6e-06 Score=74.24 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=75.7
Q ss_pred cccCccCCCCceEEEeccC-Ccccc-ccccchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEc
Q 011151 88 IWGNVKGLRGLRSLLVESD-DYSWF-SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSL 160 (492)
Q Consensus 88 ~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L 160 (492)
+...+...+.|++|++++| ....- ...+...+...+.|++|+|+ ++.++. +...+...++|++|+|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-------~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-------GTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-------TSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-------CCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 3334457788888888887 52110 01134445667788888888 666654 3344556677888888
Q ss_pred cCCCCccc-----cchhhhcCCCCCeeec--Cccccccc----ccccccCCCCCcEEecCCCcc
Q 011151 161 CGQREIEK-----LPETLCELYNLERLNI--TSCNHLRE----LPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 161 ~~~~~~~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~ 213 (492)
++|. ++. +...+...+.|++|++ ++|.+... +...+...++|++|++++|.+
T Consensus 101 ~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 101 ESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 8888 542 4455667778888888 66763322 334455667888888888755
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=7.6e-07 Score=80.27 Aligned_cols=80 Identities=21% Similarity=0.225 Sum_probs=53.5
Q ss_pred hccCcCCEEEccCCCCccc---cchhhhcCCCCCeeecCcccccccccccccCCC--CCcEEecCCCcccccccc-----
Q 011151 150 EKLLHLKYLSLCGQREIEK---LPETLCELYNLERLNITSCNHLRELPQGIGKLR--KLMYLDNDDTWFLRYLPV----- 219 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~~~----- 219 (492)
.++++|+.|+|++|. +.. +|..+..+++|+.|+|++|. +..+ ..+..+. +|++|++++|.+....|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 457788888888888 443 44556678888888888887 4433 2233333 788888888877655442
Q ss_pred --cccccccccccce
Q 011151 220 --GIGELINLRRVTK 232 (492)
Q Consensus 220 --~l~~l~~L~~L~l 232 (492)
.+..+++|+.|+-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 2566777777753
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=1.8e-06 Score=73.95 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=86.9
Q ss_pred cccccchhhccCCeeeEEecchhhhhhccc-cccc-----cCchhhccCcCCEEEccCCCCccc-----cchhhhcCCCC
Q 011151 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKN-FIKK-----IPTNIEKLLHLKYLSLCGQREIEK-----LPETLCELYNL 179 (492)
Q Consensus 111 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L 179 (492)
+...+...+...+.|+.|+|+ ++ .++. +...+...++|++|+|++|. ++. +...+...+.|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~-------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLN-------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECT-------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCCCEEEec-------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCc
Confidence 334456667888999999999 76 6644 44556677899999999999 552 44556677899
Q ss_pred CeeecCcccccc----cccccccCCCCCcEEec--CCCccccc----ccccccccccccccceEEeecc
Q 011151 180 ERLNITSCNHLR----ELPQGIGKLRKLMYLDN--DDTWFLRY----LPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 180 ~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
++|++++|.+.. .+...+...++|++|++ ++|.+... +...+...+.|++|++..+...
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 999999998433 24566778889999999 77876543 2233455677888887766543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.97 E-value=0.00035 Score=67.02 Aligned_cols=106 Identities=16% Similarity=0.076 Sum_probs=70.2
Q ss_pred hhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccC
Q 011151 275 ELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 275 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~ 354 (492)
.+.++..|+.+.+..+- +. .-...+..+..|+.+.+... ... ++...+..|.+|+.+.+.++..
T Consensus 235 ~f~~~~~L~~i~lp~~v-~~------------I~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i 298 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNV-TS------------IGSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAI 298 (379)
T ss_dssp TTTTCSSCCEEEECTTC-CE------------ECTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTC
T ss_pred cccCCccceEEEcCCCc-cE------------eCccccceeehhcccccccc-cee--cccccccccccccccccccccc
Confidence 45677888888886542 10 01124556788999998654 333 4356678999999999987644
Q ss_pred CCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceecc
Q 011151 355 CEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409 (492)
Q Consensus 355 ~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (492)
...-.. +.++.+|+.+.|..+ ++.++...+. .+.+|+++.+-
T Consensus 299 ~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~-----------~C~~L~~i~ip 341 (379)
T 4h09_A 299 ETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFK-----------NCKALSTISYP 341 (379)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------TCTTCCCCCCC
T ss_pred ceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhh-----------CCCCCCEEEEC
Confidence 433222 788999999999643 6667655443 56677777663
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=2.1e-05 Score=70.86 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCCceE--EEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC---chhhccCcCCEEEccCCCCccc
Q 011151 94 GLRGLRS--LLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP---TNIEKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 94 ~~~~L~~--L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~l~~L~~L~L~~~~~~~~ 168 (492)
..+.|+. +++..|....+...++-....+++|+.|+|+ +|.+..++ ..+..+++|++|+|++|. +..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-------~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~ 210 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLS-------NNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKS 210 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECT-------TSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCS
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECC-------CCCCCCCccchhHHhhCCCCCEEECCCCc-cCC
Confidence 4556665 6667775444444344434678999999999 88887654 567789999999999999 776
Q ss_pred cchhhhcCC--CCCeeecCcccccccccc-------cccCCCCCcEEec
Q 011151 169 LPETLCELY--NLERLNITSCNHLRELPQ-------GIGKLRKLMYLDN 208 (492)
Q Consensus 169 lp~~~~~l~--~L~~L~l~~~~~~~~lp~-------~~~~l~~L~~L~l 208 (492)
+ ..+..+. +|++|++++|.+...+|. .+..+++|+.||-
T Consensus 211 ~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 211 E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred c-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 6 3355555 999999999996655552 3578999999874
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.67 E-value=0.00074 Score=68.21 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhccceE
Q 011151 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECL 51 (492)
Q Consensus 1 ~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~~~~~ 51 (492)
+||+++ ||++|+++|||+....+ .+.+|+|||++|++|+.++..+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 467777 99999999999988653 446799999999999999987653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.25 E-value=0.018 Score=48.79 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCCCceEEEeccC-Ccccccc--ccchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEccCCCC
Q 011151 94 GLRGLRSLLVESD-DYSWFSE--VLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSLCGQRE 165 (492)
Q Consensus 94 ~~~~L~~L~l~~~-~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~ 165 (492)
+-+.|+.|+++++ .+. ..+ .+-+++..-..|+.|+|+ ++.+++ +...+..-+.|++|+|++|.
T Consensus 39 ~n~~L~~L~L~~nn~ig-d~ga~~la~aL~~N~~L~~L~L~-------~n~igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVS-KERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp TCSSCCEEECTTCCSSC-HHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred cCCCccEEECCCCCCCC-HHHHHHHHHHHhhCCCcCEEEcc-------CCCCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 4566677777654 311 111 133444555666777776 555543 22334444566677776666
Q ss_pred cc-----ccchhhhcCCCCCeeecCcccc--cc-----cccccccCCCCCcEEecCCC
Q 011151 166 IE-----KLPETLCELYNLERLNITSCNH--LR-----ELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 166 ~~-----~lp~~~~~l~~L~~L~l~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~ 211 (492)
++ .+...+..-..|++|+++++.. +. .+...+..-+.|+.|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 43 1222334445566666654321 11 12233344455666666544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.67 E-value=0.033 Score=47.25 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=52.2
Q ss_pred cchhhccCCeeeEEecchhhhhhccc-cccc-----cCchhhccCcCCEEEccCCCCcc-----ccchhhhcCCCCCeee
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKN-FIKK-----IPTNIEKLLHLKYLSLCGQREIE-----KLPETLCELYNLERLN 183 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~-----l~~~~~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~ 183 (492)
+...+..-+.|+.|+|+ ++ .++. +-..+..-..|+.|+|++|. ++ .+...+..-+.|+.|+
T Consensus 33 l~~ll~~n~~L~~L~L~-------~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 33 INRLREDDTDLKEVNIN-------NMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp HHHHHTTCSSCCEEECT-------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEE
T ss_pred HHHHHhcCCCccEEECC-------CCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEe
Confidence 44444556678888887 53 5443 33444555677888888877 44 2333455566777777
Q ss_pred cCcccccc----cccccccCCCCCcEEecCCC
Q 011151 184 ITSCNHLR----ELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 184 l~~~~~~~----~lp~~~~~l~~L~~L~l~~~ 211 (492)
|++|.+.. .+...+..-+.|++|+++++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 77777332 23333445556777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.64 E-value=0.048 Score=42.93 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=15.8
Q ss_pred cCCEEEccCCCCccccchh-hhcCCCCCeeecCccc
Q 011151 154 HLKYLSLCGQREIEKLPET-LCELYNLERLNITSCN 188 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 188 (492)
+|++|+|++|. +..+|.. +..+++|+.|+|++|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45555555555 4444432 3344444444444444
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.11 E-value=0.14 Score=40.29 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=25.9
Q ss_pred eeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCC
Q 011151 124 CLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQR 164 (492)
Q Consensus 124 ~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~ 164 (492)
+|+.|+|+ +|.+..+|.. |..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls-------~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLT-------GNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECT-------TSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECC-------CCcCCccChhhhhhccccCEEEecCCC
Confidence 47778888 7778777754 6677788888888877
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.93 E-value=0.19 Score=56.02 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhccc
Q 011151 2 EDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNE 49 (492)
Q Consensus 2 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~~~ 49 (492)
++.++++|++|+++||++... +++..+|+|||++|++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 567899999999999999765 344567999999999999987765
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=78.96 E-value=1.4 Score=44.48 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhc
Q 011151 3 DIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCS 47 (492)
Q Consensus 3 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~ 47 (492)
+.+++++++|+++|||+.... +....|+||++++++++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhhh
Confidence 467899999999999996542 334579999999999998843
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=75.76 E-value=1.9 Score=46.25 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHH
Q 011151 3 DIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFA 42 (492)
Q Consensus 3 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~ 42 (492)
+.++++|++|+++|||+..+. ...++|||++++++
T Consensus 402 edAe~~L~eLvdRSLLq~d~~-----~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQPK-----ESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCSS-----SSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeCC-----CCEEEehHHHHHHh
Confidence 468999999999999998422 24789999999865
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.57 E-value=20 Score=26.08 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=15.6
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecc
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLE 131 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 131 (492)
+|..|+.+.+-.. ++.+-..+|.+|.+|+.+.+.
T Consensus 18 ~c~~L~~i~iP~~----v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 18 GNTVIREITVQPN----IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TCTTCCCEEECTT----SSCCCTTSSTTCTTCCCEEEC
T ss_pred CCCCCcEEEcCCc----hheEcHHHHhccCCccEEEEc
Confidence 4555555555433 333333444455555554444
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.85 E-value=73 Score=23.03 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=9.8
Q ss_pred cccCCCCcceEeecC
Q 011151 426 EIIIMPRLSFLEISG 440 (492)
Q Consensus 426 ~~~~~~~L~~L~l~~ 440 (492)
++..|.+|+.+.+.+
T Consensus 38 aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 38 MFSGCTALEKLILTG 52 (100)
T ss_dssp SSTTCTTCCCEEECC
T ss_pred HHhccCCccEEEEcC
Confidence 455667777777765
Done!