BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011155
(492 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224124936|ref|XP_002329850.1| predicted protein [Populus trichocarpa]
gi|222871087|gb|EEF08218.1| predicted protein [Populus trichocarpa]
Length = 503
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/501 (79%), Positives = 441/501 (88%), Gaps = 11/501 (2%)
Query: 1 MASLTPP---STAVQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANK 56
MASL+ P +T VQPGRIRV+K+GS + GPVVYWMFRDQR++DNWALIHAVDQAN+
Sbjct: 1 MASLSSPPTQNTIVQPGRIRVIKEGSRGQVGGGPVVYWMFRDQRLQDNWALIHAVDQANR 60
Query: 57 NNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV 116
+NVPVAVAFNLFDQFLGAKARQLGFMLRGL LQ +IEET QI FFLF GEAE+ IP F+
Sbjct: 61 SNVPVAVAFNLFDQFLGAKARQLGFMLRGLCQLQSHIEETLQIPFFLFLGEAEETIPAFL 120
Query: 117 RECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
++CGASLLVTDFSPLR+ R C+D+IC RVSDSVTIHEVDAHNVVP+WVASEKLEYSA+TL
Sbjct: 121 KDCGASLLVTDFSPLRQFRTCQDEICKRVSDSVTIHEVDAHNVVPIWVASEKLEYSARTL 180
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGED 235
RGKINKLLPEYLID+PML+ P KW T+QSIDW+ +I VLRKGAEVPEI WCE GED
Sbjct: 181 RGKINKLLPEYLIDFPMLQLPKNKWVAATKQSIDWNDLIDNVLRKGAEVPEIKWCEPGED 240
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
AAMEVL GSKDGFLT+RLKNY TDRNNPLKP+ LSGLSPYLHFGQISAQRCALEARK R
Sbjct: 241 AAMEVLMGSKDGFLTQRLKNYSTDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARKVRN 300
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
L P++ D FLEELIVRRELADNFCFYQPNYDS+ GAWEWARK+L DHASDKREHIY+KEQ
Sbjct: 301 LSPQSADAFLEELIVRRELADNFCFYQPNYDSIHGAWEWARKTLADHASDKREHIYSKEQ 360
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMR------MYWAKKILEWTTGPEEALAIAIYLN 409
EKAQTADPLWNASQ+EMV +GKMHGFMR MYWAKKILEWT GPEEALAI+IYLN
Sbjct: 361 LEKAQTADPLWNASQLEMVCHGKMHGFMRQKTLCSMYWAKKILEWTRGPEEALAISIYLN 420
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP GYVGCMWSICG+HDQGWKERP+FGKIRYMNY+GCKRKF+VDGYI YVKR
Sbjct: 421 DKYEIDGRDPGGYVGCMWSICGIHDQGWKERPIFGKIRYMNYAGCKRKFNVDGYITYVKR 480
Query: 470 IVGGTKKRRADSLVSGKEKEL 490
IVG KKR+A++ + KEL
Sbjct: 481 IVGDMKKRKAENELHKTMKEL 501
>gi|225470301|ref|XP_002266483.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Vitis vinifera]
Length = 485
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/482 (80%), Positives = 433/482 (89%), Gaps = 2/482 (0%)
Query: 11 VQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
VQ GRIRVLK+GS R GPVVYWMFRDQR+RDNWALIHAVDQANK NVPVA+AFNLF
Sbjct: 2 VQQGRIRVLKEGSTPSGRDAGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLF 61
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
DQFLGAKARQLGFMLRGLRLL R++E+T QI FFLFQGEA + IPNF+RE GASLLVTDF
Sbjct: 62 DQFLGAKARQLGFMLRGLRLLHRDLEQTLQIPFFLFQGEAIETIPNFLREYGASLLVTDF 121
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
SPLRE+++ K++IC RV V+IHEVDAHN+VP WVASEKLEYSA+T+RGKINKLLPEYL
Sbjct: 122 SPLREVQKWKEEICKRVGKKVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYL 181
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
ID+P L+ P KW GT QSIDWD +I VLR+GAEVPEI WCESGE+AA+E+L GSK+GF
Sbjct: 182 IDFPTLQPPSIKWAGTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGF 241
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
LTKRLKNY TDRNNPLKP ALSGLSPYLHFGQISAQRCALEA+K RK CP+A+D FLEEL
Sbjct: 242 LTKRLKNYSTDRNNPLKPGALSGLSPYLHFGQISAQRCALEAKKNRKNCPQAVDVFLEEL 301
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
IVRRELADNFCFYQP Y+SL+GAWEWARK+L DHASDKREHIYTKEQ E AQTADPLWNA
Sbjct: 302 IVRRELADNFCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNA 361
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
SQ+EMV+ GKMHGFMRMYWAKKILEWT GPEEALAI+IYLNDKYEIDGRDPNGYVGCMWS
Sbjct: 362 SQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWS 421
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKEK 488
ICGVHDQGW+ER +FGKIRYMNY+GCKRKFDVDGYIA+VKR+V TKKR+A+S + + K
Sbjct: 422 ICGVHDQGWQERQIFGKIRYMNYAGCKRKFDVDGYIAHVKRLVTETKKRKAESSLGKEAK 481
Query: 489 EL 490
EL
Sbjct: 482 EL 483
>gi|255537109|ref|XP_002509621.1| DNA photolyase, putative [Ricinus communis]
gi|223549520|gb|EEF51008.1| DNA photolyase, putative [Ricinus communis]
Length = 489
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/492 (79%), Positives = 436/492 (88%), Gaps = 5/492 (1%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
MASL ST++QPGR+RVLK+G L+K+ GPV+YWMFRDQR+RDNWALIHAVDQANK NVP
Sbjct: 1 MASL---STSIQPGRVRVLKEG-LEKQTGPVIYWMFRDQRLRDNWALIHAVDQANKANVP 56
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120
VAVAFNLFDQFLGAKARQLGFML+GLRLLQ IEE QI FFLFQG AED IP F+ ECG
Sbjct: 57 VAVAFNLFDQFLGAKARQLGFMLKGLRLLQGKIEERLQIPFFLFQGAAEDTIPQFLGECG 116
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
ASLLVTDFSPLREIR+ KD+IC R+SD+VTIHEVDAHN+VP+WVASEKLEYSA+T+R KI
Sbjct: 117 ASLLVTDFSPLREIRKSKDEICMRISDTVTIHEVDAHNIVPIWVASEKLEYSARTIRSKI 176
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGT-RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
NK LP+YLID+P L P W+ +SIDWD++I VLRKGAEVPEI WC GEDAAME
Sbjct: 177 NKRLPDYLIDFPALRPPNTMWSAAANKSIDWDTLIDEVLRKGAEVPEIEWCMPGEDAAME 236
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
VL G+K+GFLTKRLKNY TDRNNPLKP+ LSGLSPYLHFGQISAQRCALEARKA+KLCP+
Sbjct: 237 VLMGTKNGFLTKRLKNYSTDRNNPLKPQGLSGLSPYLHFGQISAQRCALEARKAQKLCPQ 296
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
++D+FLEELIVRRELADNFCFYQP+YDSL+GAWEWAR +L DHASDKREHIY+KEQ E+A
Sbjct: 297 SVDSFLEELIVRRELADNFCFYQPHYDSLQGAWEWARNTLLDHASDKREHIYSKEQLERA 356
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
QTAD LWNASQ+EMVY GKMHGFMRMYWAKKILEWT GPEEALAI+ YLNDKYEIDGRDP
Sbjct: 357 QTADLLWNASQLEMVYYGKMHGFMRMYWAKKILEWTRGPEEALAISTYLNDKYEIDGRDP 416
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
+GYVGCMWSICGVHDQGWKERP+FGKIRYMNY+GCKRKF+VD YI YVKR V KKR+A
Sbjct: 417 SGYVGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFNVDSYITYVKRFVSEIKKRKA 476
Query: 480 DSLVSGKEKELC 491
++ K KE C
Sbjct: 477 ETQFGRKAKEPC 488
>gi|147862663|emb|CAN79335.1| hypothetical protein VITISV_026088 [Vitis vinifera]
Length = 514
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/508 (75%), Positives = 430/508 (84%), Gaps = 19/508 (3%)
Query: 2 ASLTPPSTAVQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
+S S+ VQ GRIRVLK+GS R GPVVYWMFRDQR+RDNWALIHAVDQANK NV
Sbjct: 5 SSALNKSSMVQQGRIRVLKEGSTPSGRDAGPVVYWMFRDQRLRDNWALIHAVDQANKANV 64
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-----EAEDNIPN 114
PVA+AFNLFDQFLGAKARQLGFMLRGLRLL R++E+T QI FFLFQ A +
Sbjct: 65 PVAIAFNLFDQFLGAKARQLGFMLRGLRLLHRDLEQTLQIPFFLFQAYTFEISASLLDSH 124
Query: 115 FVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAK 174
V E GASLLVTDFSPLRE+++ K++IC RV V+IHEVDAHN+VP WVASEKLEYSA+
Sbjct: 125 SVWEYGASLLVTDFSPLREVQKWKEEICKRVGKKVSIHEVDAHNIVPTWVASEKLEYSAR 184
Query: 175 TLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGE 234
T+RGKINKLLPEYLID+P L+ P KW GT QSIDWD +I VLR+GAEVPEI WCESGE
Sbjct: 185 TIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQSIDWDDLITEVLREGAEVPEIKWCESGE 244
Query: 235 DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR 294
+AA+E+L GSK+GFLTKRLKNY TDRNNPLKP ALSGLSPYLHFGQISAQRCALEA+K +
Sbjct: 245 NAAVEILMGSKNGFLTKRLKNYSTDRNNPLKPGALSGLSPYLHFGQISAQRCALEAKKIQ 304
Query: 295 KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
K CP+A+D FLEELIVRRELADNFCFYQP Y+SL+GAWEWARK+L DHASDKREHIYTKE
Sbjct: 305 KNCPQAVDVFLEELIVRRELADNFCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKE 364
Query: 355 QFEKAQTADPLWNASQMEMVYNGKMHGFMR------------MYWAKKILEWTTGPEEAL 402
Q E AQTADPLWNASQ+EMV+ GKMHGFMR MYWAKKILEWT GPEEAL
Sbjct: 365 QLENAQTADPLWNASQLEMVHYGKMHGFMRQEMQDITILEIQMYWAKKILEWTRGPEEAL 424
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
AI+IYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW+ER +FGKIRYMNY+GCKRKFDVDG
Sbjct: 425 AISIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWQERQIFGKIRYMNYAGCKRKFDVDG 484
Query: 463 YIAYVKRIVGGTKKRRADSLVSGKEKEL 490
YIAYVKR+V TKKR+A+S + + KEL
Sbjct: 485 YIAYVKRLVTETKKRKAESSLGKEAKEL 512
>gi|449459676|ref|XP_004147572.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cucumis sativus]
gi|449517475|ref|XP_004165771.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cucumis sativus]
gi|13383259|dbj|BAB39480.1| CPD photolyase [Cucumis sativus]
gi|20387244|dbj|BAB91322.1| CPD photolyase [Cucumis sativus]
Length = 489
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/480 (78%), Positives = 419/480 (87%), Gaps = 2/480 (0%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S +VQP R RVLK G+ GPVVYWMFRDQRV+DNWALIHAVD+AN+ NVPVAVAFNL
Sbjct: 6 SNSVQPCRFRVLKDGT--GSLGPVVYWMFRDQRVKDNWALIHAVDEANRANVPVAVAFNL 63
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
FD+FLGAK+RQLGFMLRGL+ LQ +I+ET QI FFLFQGEAE IPNF+RECGASLLVTD
Sbjct: 64 FDRFLGAKSRQLGFMLRGLQQLQHDIQETLQIPFFLFQGEAEQTIPNFIRECGASLLVTD 123
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
FSPLRE+R+CK++IC RV +SV +HEVDAHNVVP WVASEKLEYSAKTLRGKINK LP+Y
Sbjct: 124 FSPLREVRKCKEEICKRVEESVKVHEVDAHNVVPTWVASEKLEYSAKTLRGKINKKLPDY 183
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
LIDYP + P KW + IDWD +I LRKGA+VPE+ WC+ GE AAMEVL GSKDG
Sbjct: 184 LIDYPSMVIPTRKWPSADKFIDWDRLIDDNLRKGADVPELEWCKPGEKAAMEVLMGSKDG 243
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FLTKRLK Y DRNNPLKP+ LSGLSPYLHFGQISAQRCALEAR RKL P+A+D FLEE
Sbjct: 244 FLTKRLKGYAIDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARSIRKLNPQAVDVFLEE 303
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
LIVRRELADN+C+YQP+YDSL GAWEWARK+L DHASDKRE+IYT+EQ EKAQTADPLWN
Sbjct: 304 LIVRRELADNYCYYQPHYDSLLGAWEWARKTLMDHASDKREYIYTREQLEKAQTADPLWN 363
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A+Q+EM ++GKMHGFMRMYWAKKILEWT GPEEAL I IYLNDKYEIDGRDPNGYVGCMW
Sbjct: 364 AAQLEMAHHGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNGYVGCMW 423
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKE 487
SICGVHDQGWKERPVFGKIRYMNY+GCKRKFDVDGYIAYVKR+VG KKR+ + + ++
Sbjct: 424 SICGVHDQGWKERPVFGKIRYMNYAGCKRKFDVDGYIAYVKRLVGEIKKRKPEETLEDRK 483
>gi|30682738|ref|NP_849651.1| photolyase 1 [Arabidopsis thaliana]
gi|75201504|sp|Q9SB00.1|PHR_ARATH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName:
Full=AtCPDII; AltName: Full=DNA photolyase; AltName:
Full=Photoreactivating enzyme 1; AltName: Full=Protein
UV RESISTANCE 2
gi|4239819|dbj|BAA74701.1| PHR1 [Arabidopsis thaliana]
gi|332190750|gb|AEE28871.1| photolyase 1 [Arabidopsis thaliana]
Length = 496
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/476 (76%), Positives = 418/476 (87%), Gaps = 6/476 (1%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DPLWNASQ+EMVY GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYEIDGRDP+GY
Sbjct: 363 DPLWNASQLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGY 422
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VGCMWSICGVHDQGWKERPVFGKIRYMNY+GCKRKF+VD YI+YVK +V TKK+R
Sbjct: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKR 478
>gi|296082842|emb|CBI22143.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/533 (72%), Positives = 428/533 (80%), Gaps = 55/533 (10%)
Query: 11 VQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
VQ GRIRVLK+GS R GPVVYWMFRDQR+RDNWALIHAVDQANK NVPVA+AFNLF
Sbjct: 2 VQQGRIRVLKEGSTPSGRDAGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLF 61
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQI-LFFLFQGEAEDNIPNFVRECGASLLVTD 127
DQFLGAKARQLGFMLRGLRLL R++E+T QI L GEA + IPNF+RE GASLLVTD
Sbjct: 62 DQFLGAKARQLGFMLRGLRLLHRDLEQTLQIPLLDSHSGEAIETIPNFLREYGASLLVTD 121
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
FSPLRE+++ K++IC RV V+IHEVDAHN+VP WVASEKLEYSA+T+RGKINKLLPEY
Sbjct: 122 FSPLREVQKWKEEICKRVGKKVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEY 181
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
LID+P L+ P KW GT QSIDWD +I VLR+GAEVPEI WCESGE+AA+E+L GSK+G
Sbjct: 182 LIDFPTLQPPSIKWAGTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNG 241
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FLTKRLKNY TDRNNPLKP ALSGLSPYLHFGQISAQRCALEA+K RK CP+A+D FLEE
Sbjct: 242 FLTKRLKNYSTDRNNPLKPGALSGLSPYLHFGQISAQRCALEAKKNRKNCPQAVDVFLEE 301
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
LIVRRELADNFCFYQP Y+SL+GAWEWARK+L DHASDKREHIYTKEQ E AQTADPLWN
Sbjct: 302 LIVRRELADNFCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWN 361
Query: 368 ASQMEMVYNGKMHGFM-------------------------------------------- 383
ASQ+EMV+ GKMHGFM
Sbjct: 362 ASQLEMVHYGKMHGFMRQFYFDKYHLFCFVSFQCCFMFLCVFMMILRSYKKCYQSQITIL 421
Query: 384 -------RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RMYWAKKILEWT GPEEALAI+IYLNDKYEIDGRDPNGYVGCMWSICGVHDQG
Sbjct: 422 RLIKNICRMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 481
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRAD-SLVSGKEK 488
W+ER +FGKIRYMNY+GCKRKFDVDGYIA+VKR+V TKKR+A+ SL G +K
Sbjct: 482 WQERQIFGKIRYMNYAGCKRKFDVDGYIAHVKRLVTETKKRKAESSLAIGTDK 534
>gi|1617219|emb|CAA67683.1| CPD photolyase [Arabidopsis thaliana]
gi|2984707|gb|AAC08008.1| type II CPD photolyase PHR1 [Arabidopsis thaliana]
Length = 496
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/476 (76%), Positives = 416/476 (87%), Gaps = 6/476 (1%)
Query: 8 STAVQPGRIRVLKQGSL---DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS D+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPSDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
FLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 IFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DPLWNASQ+EM+Y GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYEIDGRDP+GY
Sbjct: 363 DPLWNASQLEMLYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGY 422
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VGCMWSICGVHDQGWKERPVFGKIRYMNY+GCKRKF+VD YI+YVK +V TKK+R
Sbjct: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKR 478
>gi|30421116|gb|AAP31406.1| CPD photolyase [Spinacia oleracea]
gi|30421159|gb|AAP31407.1| CPD photolyase [Spinacia oleracea]
Length = 491
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/489 (75%), Positives = 416/489 (85%), Gaps = 2/489 (0%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
M S P+T VQP RIRVLK GS G VVYWMFRDQRVRDNWALIHAVD+ANK N P
Sbjct: 1 MTSKPVPTTTVQPERIRVLKPGS--NPNGAVVYWMFRDQRVRDNWALIHAVDEANKRNAP 58
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120
VAVAFNLFD F GA ARQLGFMLRGL+LLQ ++ + I FFLFQGE + IP F+ ECG
Sbjct: 59 VAVAFNLFDGFKGANARQLGFMLRGLKLLQASLHNSLHIPFFLFQGEVVETIPKFLVECG 118
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
ASLLVTDF+PLREIR K+++C RV DSV+IHEVDAHNVVPVW AS KLEY A+T+R KI
Sbjct: 119 ASLLVTDFTPLREIRGFKEELCKRVGDSVSIHEVDAHNVVPVWEASSKLEYGARTIRTKI 178
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
NKLLP YL DYP+L+ P W + I WD +I L+KGAEVPEI WC+ GE AA+EV
Sbjct: 179 NKLLPTYLTDYPILQPPNCSWESSSPVIQWDQLIEDRLKKGAEVPEIDWCKPGETAALEV 238
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
LKGS++GFLTKRLK+Y TDRN PLKP ALSGLSPYLHFGQISAQRCA EAR RK+ PEA
Sbjct: 239 LKGSQNGFLTKRLKSYATDRNIPLKPGALSGLSPYLHFGQISAQRCAFEARNVRKVAPEA 298
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+D F EELIVRRELADNFC+YQPNYDSL GAWEWARK+L DHASDKREH+YT+EQ EKAQ
Sbjct: 299 VDAFTEELIVRRELADNFCYYQPNYDSLMGAWEWARKTLMDHASDKREHLYTREQLEKAQ 358
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
TADPLWNASQ+EMV+ GKMHGFMRMYWAKKILEWT+GPEEALAIAIYLNDKYE+DGRDPN
Sbjct: 359 TADPLWNASQLEMVHFGKMHGFMRMYWAKKILEWTSGPEEALAIAIYLNDKYEMDGRDPN 418
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRAD 480
GYVGCMWSICG+HDQGW+ERPVFGKIRYMNY+GCKRKF+VDGYIAYV+++V TKKR+A+
Sbjct: 419 GYVGCMWSICGLHDQGWRERPVFGKIRYMNYAGCKRKFNVDGYIAYVRKLVVDTKKRKAE 478
Query: 481 SLVSGKEKE 489
+ +S ++K+
Sbjct: 479 ADISSEKKK 487
>gi|297849606|ref|XP_002892684.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
lyrata]
gi|297338526|gb|EFH68943.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/476 (76%), Positives = 412/476 (86%), Gaps = 6/476 (1%)
Query: 8 STAVQPGRIRVLKQGSL---DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQ GRIR+LK+GS D+ GPVVYWMFRDQR+ DNWALIHAVD AN+ N PVAV
Sbjct: 4 AISVQTGRIRILKKGSWQPSDQTVGPVVYWMFRDQRLNDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFLGAKARQLGFML+GLR L I+ + QI FFL QG+A++ IP F+ ECGAS L
Sbjct: 64 FNLFDQFLGAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPKFIAECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIR CKD++ R SDS+ IHEVDAHN+VP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRSCKDEVVKRTSDSLAIHEVDAHNIVPMWAASGKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA MEVL
Sbjct: 183 PDYLIEFPKLELPKKKWTGMMDKKMVDWDSLIDKVVREGAEVPEIEWCVPGEDAGMEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G KDGFLTKRLKNY DRNNP+KP+ALSGLSPYLHFGQISAQRCALEARK R P+A+D
Sbjct: 243 GKKDGFLTKRLKNYSADRNNPVKPKALSGLSPYLHFGQISAQRCALEARKVRNTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK QTA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGQTA 362
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DPLWN SQ+EMVY GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYEIDGRDP+GY
Sbjct: 363 DPLWNGSQLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGY 422
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VGCMWSICGVHDQGWKERPVFGKIRYMNY+GCKRKF+VD YI+YVK +V TKK+R
Sbjct: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKR 478
>gi|18391386|ref|NP_563906.1| photolyase 1 [Arabidopsis thaliana]
gi|14334576|gb|AAK59467.1| unknown protein [Arabidopsis thaliana]
gi|21280945|gb|AAM44957.1| unknown protein [Arabidopsis thaliana]
gi|332190751|gb|AEE28872.1| photolyase 1 [Arabidopsis thaliana]
Length = 490
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/476 (75%), Positives = 412/476 (86%), Gaps = 12/476 (2%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DPL EMVY GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYEIDGRDP+GY
Sbjct: 363 DPL------EMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGY 416
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VGCMWSICGVHDQGWKERPVFGKIRYMNY+GCKRKF+VD YI+YVK +V TKK+R
Sbjct: 417 VGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKR 472
>gi|8778649|gb|AAF79657.1|AC025416_31 F5O11.9 [Arabidopsis thaliana]
Length = 505
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/485 (74%), Positives = 413/485 (85%), Gaps = 15/485 (3%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-----EWTTGPEEALAIAIYLNDKYE 413
DPLWNASQ+EMVY GKMHGFMR W +L EWT GPEEAL+I+IYLN+KYE
Sbjct: 363 DPLWNASQLEMVYQGKMHGFMRQVKSFIWILTVLYNSNYEWTKGPEEALSISIYLNNKYE 422
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGG 473
IDGRDP+GYVGCMWSICGVHDQGWKERPVFGKIRYMNY+GCKRKF+VD YI+YVK +V
Sbjct: 423 IDGRDPSGYVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSV 482
Query: 474 TKKRR 478
TKK+R
Sbjct: 483 TKKKR 487
>gi|351727839|ref|NP_001238710.1| CPD photolyase [Glycine max]
gi|169159213|dbj|BAG12106.1| CPD photolyase [Glycine max]
Length = 500
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/492 (74%), Positives = 412/492 (83%), Gaps = 5/492 (1%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSL-DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
MAS P T VQ GR+R LK+GS + GPVVYWMFRDQRV DNWALIHAV +ANK NV
Sbjct: 1 MASTASPMT-VQAGRVRTLKEGSRGESGLGPVVYWMFRDQRVTDNWALIHAVAEANKANV 59
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
PVAV FNLF FLGAK+R LGFMLRGLR L ++ FLFQGEA++ +P F+REC
Sbjct: 60 PVAVVFNLFHTFLGAKSRHLGFMLRGLRQLCHRMQHYSSNPLFLFQGEADETVPKFLREC 119
Query: 120 GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
GASLLVTDFSPLRE+RRCK++IC RVSDSV +HEVDAHNVVP+WVAS+KLEYSA+T+R K
Sbjct: 120 GASLLVTDFSPLREVRRCKEEICKRVSDSVAVHEVDAHNVVPLWVASDKLEYSARTIRAK 179
Query: 180 INKLLPEYLIDYP--MLEQPIEKWTGTR-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
I K L +YL+D+P +E P KW T SIDWD +IA VLR+GAEVPE+ WCE GE A
Sbjct: 180 ITKRLSDYLVDFPDIEVEPPAGKWVATENHSIDWDDLIADVLRRGAEVPEVDWCEPGEIA 239
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
A EVL GSK+GFLTKRLK Y DRNNP P ALSGLSPYLHFGQISAQRCALEARK R
Sbjct: 240 ASEVLMGSKNGFLTKRLKGYSLDRNNPCHPNALSGLSPYLHFGQISAQRCALEARKRRNS 299
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
P+AID FLEELIVRRELADN+CFYQP+YDSLKGAW WA+ +L +HA+DKREHIYTKEQ
Sbjct: 300 HPQAIDAFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLTEHATDKREHIYTKEQL 359
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG 416
EKAQTADPLWNASQ+EMV+ GKMHGFMRMYWAKKILEWT GPEEAL I++YLNDKYE+DG
Sbjct: 360 EKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEISLYLNDKYELDG 419
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
RDPNGYVGCMWSICGVHDQGWKERP+FGKIRYMNY+GCKRKFDVD YIAYV ++V KK
Sbjct: 420 RDPNGYVGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRELKK 479
Query: 477 RRADSLVSGKEK 488
R+A++L+S KEK
Sbjct: 480 RKAENLLSQKEK 491
>gi|357481903|ref|XP_003611237.1| CPD photolyase [Medicago truncatula]
gi|355512572|gb|AES94195.1| CPD photolyase [Medicago truncatula]
Length = 517
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/505 (72%), Positives = 416/505 (82%), Gaps = 23/505 (4%)
Query: 5 TPPST--AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVA 62
+PPS +V GRIR LK+GS K GPVVYWMFRDQR++DNWALIHAV QANK VPVA
Sbjct: 6 SPPSMLPSVNSGRIRTLKEGS--GKTGPVVYWMFRDQRLKDNWALIHAVHQANKAKVPVA 63
Query: 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122
V FNLFD FLGAKAR LGFML+GLR L ++ + I FFL +GEAE+ + FVRECGAS
Sbjct: 64 VVFNLFDHFLGAKARHLGFMLKGLRQLCHQLQHSLHIPFFLVRGEAEETVSKFVRECGAS 123
Query: 123 LLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK 182
LLVTD SPLRE+++CK +IC RVSD VT+HEVDAHNVVP+WVASEKLEYSA+T+RGKINK
Sbjct: 124 LLVTDMSPLREVKKCKAEICERVSDLVTVHEVDAHNVVPLWVASEKLEYSARTIRGKINK 183
Query: 183 LLPEYLIDYPMLEQPIEKWTGTR-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
L +YL+D+P +E P KW T IDWD IIA VLR G+EVPE+ WCE GE AAMEVL
Sbjct: 184 KLSDYLVDFPDVEPPNTKWVITEDHVIDWDDIIAQVLRSGSEVPEVDWCEPGEIAAMEVL 243
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-- 299
GSK+GFLTKRL+NY TDRNNP KP ALSGLSPYLHFGQISAQRCALEARK R P+
Sbjct: 244 MGSKNGFLTKRLRNYSTDRNNPCKPTALSGLSPYLHFGQISAQRCALEARKLRASYPQVC 303
Query: 300 ----------------AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHA 343
A+DTFLEELIVRRELADNFC+YQP+YDS++GAWEWARK+L DHA
Sbjct: 304 FTMLFMLLHFVFPKKVAVDTFLEELIVRRELADNFCYYQPHYDSIQGAWEWARKTLLDHA 363
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALA 403
SDKR+H+YT+EQ EKA+TADPLWNASQ+EMV+ GKMHGFMRMYWAKKILEWT GPEEAL
Sbjct: 364 SDKRQHVYTREQLEKAKTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALE 423
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
I IYLNDKYE+DGRDP+GY GCMWSICGVHDQGW+ERP+FGKIRYMNY GCKRKFDVD Y
Sbjct: 424 ICIYLNDKYEMDGRDPSGYNGCMWSICGVHDQGWRERPIFGKIRYMNYEGCKRKFDVDRY 483
Query: 464 IAYVKRIVGGTKKRRADSLVSGKEK 488
IAYV +IVG +KR+A++L+S KEK
Sbjct: 484 IAYVNKIVGELRKRKAENLLSEKEK 508
>gi|33330687|gb|AAQ10672.1| type II CPD photolyase [Stellaria longipes]
Length = 499
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/491 (72%), Positives = 410/491 (83%), Gaps = 2/491 (0%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLD-KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
M + P QPGRIR+LKQ + ++G VVYWM R+QR +DNW LIHAV++ANK NV
Sbjct: 1 MTTHPNPIPLTQPGRIRILKQAKPNPTQKGAVVYWMLREQRAQDNWRLIHAVNEANKMNV 60
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
P+AV FNLFD F GAKAR LGFMLRGL+LL N+ + FFLFQGE + IP F+ EC
Sbjct: 61 PIAVTFNLFDAFKGAKARHLGFMLRGLKLLHSNLLLQ-HLPFFLFQGEVVETIPKFLIEC 119
Query: 120 GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
GASLLVTDFSPLREIR+ K+++C + DSV+IHEVDAHNVVPVW AS KLEY A+T+R K
Sbjct: 120 GASLLVTDFSPLREIRKYKEELCKIIDDSVSIHEVDAHNVVPVWEASSKLEYGARTIRSK 179
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
INKLLP YLID+P L P ++W + IDWD +I +++GAEVPEI WCE GE AA+E
Sbjct: 180 INKLLPTYLIDFPTLTSPNQRWPSSPPDIDWDGLIEERIKQGAEVPEIDWCEPGETAALE 239
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
VL G KDGFLTKRLK Y TDRN PLKPRALSGLSPYLHFGQISAQRCALEAR+ RKL PE
Sbjct: 240 VLMGEKDGFLTKRLKKYGTDRNIPLKPRALSGLSPYLHFGQISAQRCALEARQVRKLSPE 299
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
++DTFLEELIVRRELADNFC+YQP+YDS+KGAW+WARK+L DHASDKREH+YT+EQ EKA
Sbjct: 300 SVDTFLEELIVRRELADNFCYYQPHYDSIKGAWDWARKTLMDHASDKREHLYTREQLEKA 359
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
QTADPLWNASQMEMV GKMHGFMRMYW KKILEWT GPEEAL IAIYLNDKYEI GRDP
Sbjct: 360 QTADPLWNASQMEMVTFGKMHGFMRMYWPKKILEWTNGPEEALEIAIYLNDKYEIAGRDP 419
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
NGYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVDGYI+Y+K++VG TKKR+A
Sbjct: 420 NGYVGCMWSICGIHDQGWKERPVFGKIRYMNYAGCKRKFDVDGYISYIKKLVGETKKRKA 479
Query: 480 DSLVSGKEKEL 490
D+ + K++
Sbjct: 480 DTQLGRNAKDI 490
>gi|33415319|gb|AAQ18175.1| type II CPD DNA photolyase [Pityrogramma austroamericana]
Length = 546
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/514 (62%), Positives = 382/514 (74%), Gaps = 42/514 (8%)
Query: 8 STAVQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
ST V PGR+R+LKQ S + + GPVVYWM RDQR RDNWAL++A A + P+ VAFN
Sbjct: 17 STEVNPGRVRLLKQASQEVVQGGPVVYWMSRDQRSRDNWALLYAAQCAQQQGGPLCVAFN 76
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
L D FL A+AR GFMLRGLR++ N+ + I FFL +G+AE+NIP FV CGAS+LV
Sbjct: 77 LVDSFLHAEARHFGFMLRGLRVVHHNLS-SLGIPFFLLRGKAEENIPAFVERCGASILVM 135
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
DFSPLR R ++ +C V SV++ EVDAHNVVPVWVAS+K EY+A+T+RGKI + LPE
Sbjct: 136 DFSPLRIGRVWREGVCKAVPSSVSVFEVDAHNVVPVWVASDKQEYAARTIRGKIQRHLPE 195
Query: 187 YLIDYPMLEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
YL++YP L PI WT + + IDWD +I V +KGAE E+ WCES EDAAME+L G K
Sbjct: 196 YLVEYPPLVAPIHTWTLEKPANIDWDLLIDEVAKKGAEGLEVKWCESREDAAMELLLGKK 255
Query: 246 DGFLTKRLKNY------PT---------------------------------DRNNPLKP 266
GFLT R++NY P+ DRN+P KP
Sbjct: 256 KGFLTTRIRNYADDRNDPSKPAGLSGLSPYLHYGQVLKKKGFLTTRIRNYADDRNDPSKP 315
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
LSGLSPYLH+GQ+ AQRCALE RK R+ +AIDTFLEEL++RRELADNFC+YQPNYD
Sbjct: 316 AGLSGLSPYLHYGQVLAQRCALEGRKLRRSHTKAIDTFLEELVIRRELADNFCYYQPNYD 375
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
SL+GA+EWAR +L HASDKREH+YT+E+ EK +T D LWNASQ+EMV+ GKMHGFMRMY
Sbjct: 376 SLQGAYEWARSTLLAHASDKREHLYTQEELEKGKTHDELWNASQLEMVHLGKMHGFMRMY 435
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
WAKKILEWT GPEEALA+AIYLNDKYE+DGRDPNGYVGCMWSICG+HDQGW+ERPVFGKI
Sbjct: 436 WAKKILEWTGGPEEALAVAIYLNDKYELDGRDPNGYVGCMWSICGIHDQGWQERPVFGKI 495
Query: 447 RYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRAD 480
RYMNY+GCKRKF+VDGYI YVKR+V K+ D
Sbjct: 496 RYMNYNGCKRKFNVDGYIQYVKRMVAELKRAAKD 529
>gi|302780533|ref|XP_002972041.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
gi|300160340|gb|EFJ26958.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
Length = 510
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/474 (63%), Positives = 368/474 (77%), Gaps = 9/474 (1%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S V P R+RVL QG + GPVVYWM RDQR RDNWAL++A +QA K + PVAV FNL
Sbjct: 41 SIGVNPRRVRVLSQGD-ESHSGPVVYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNL 99
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+ FL AKAR GF+LRGLR++++N+E+ I FFL +G ED IP FV C AS+LV D
Sbjct: 100 VESFLEAKARHFGFLLRGLRVVEKNLEK-LGIAFFLLRGRPEDTIPAFVEACNASILVLD 158
Query: 128 FSPLREIRRCKDKICNRVSDSVT--IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
FSPLR R + + +R+ T +HEVDAHNVVPVW+AS+KLEY+A+T+R KI + LP
Sbjct: 159 FSPLRIGRTWRTGVVSRLGADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLP 218
Query: 186 EYLIDYPMLEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
E+L+D+P LE + W G Q IDWDS+I VLR G EVPE+ WCE GED A+E L G
Sbjct: 219 EFLVDFPTLEPFSKPWPGVAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAG- 277
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
FL+ RL+ Y +RN+P K LS LSPY H+GQ+S QRCA E RKARKL +++D+F
Sbjct: 278 ---FLSSRLQRYSAERNDPSKLERLSDLSPYFHYGQLSPQRCAFEVRKARKLHMQSVDSF 334
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LEELI+RREL+DNFC+YQPNYD+++GAWEWAR SL +HA+DKREHIYT++Q E +T D
Sbjct: 335 LEELIIRRELSDNFCYYQPNYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDK 394
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
LWNASQ+EMV+ GKMHGFMRMYWAKKILEWT PE+ALAIAIY NDKY++DGRDPNGYVG
Sbjct: 395 LWNASQLEMVHRGKMHGFMRMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVG 454
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
CMWSICG+HDQGWKERP+FGKIRYMNY GCKRKF+VDGYI YV ++V KKRR
Sbjct: 455 CMWSICGIHDQGWKERPIFGKIRYMNYEGCKRKFNVDGYIMYVNKLVAEVKKRR 508
>gi|302781626|ref|XP_002972587.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
gi|300160054|gb|EFJ26673.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
Length = 510
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/474 (63%), Positives = 368/474 (77%), Gaps = 9/474 (1%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S V P R+RVL+QG + GPVVYWM RDQR RDNWAL++A +QA K + PVAV FNL
Sbjct: 41 SIGVNPRRVRVLRQGD-ESHSGPVVYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNL 99
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+ FL AKAR GF+LRGLR++++N+++ I FFL +G ED IP+FV C AS+LV D
Sbjct: 100 VESFLEAKARHFGFLLRGLRVVEKNLDK-LGIAFFLLRGRPEDTIPSFVEACNASILVLD 158
Query: 128 FSPLREIRRCKDKICNRVSDSVT--IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
FS LR R + + +R+ T +HEVDAHNVVPVW+AS+KLEY+A+T+R KI + LP
Sbjct: 159 FSSLRIGRTWRTGVVSRLGADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLP 218
Query: 186 EYLIDYPMLEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
E+L+D+P LE + W G Q IDWDS+I VLR G EVPE+ WCE GED A+E L
Sbjct: 219 EFLVDFPTLEPFSKPWPGVAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAV- 277
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
FL+ RL+ Y +RN+P K LS LSPY H+GQ+S QRCA E RKARKL +++D+F
Sbjct: 278 ---FLSSRLQRYSAERNDPSKLERLSDLSPYFHYGQLSPQRCAFEVRKARKLHMQSVDSF 334
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LEELI+RREL+DNFC+YQPNYD+++GAWEWAR SL +HA+DKREHIYT++Q E +T D
Sbjct: 335 LEELIIRRELSDNFCYYQPNYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDK 394
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
LWNASQ+EMV+ GKMHGFMRMYWAKKILEWT PE+ALAIAIY NDKY++DGRDPNGYVG
Sbjct: 395 LWNASQLEMVHRGKMHGFMRMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVG 454
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
CMWSICG+HDQGWKERP+FGKIRYMNY GCKRKF+VDGYI YV ++V KKRR
Sbjct: 455 CMWSICGIHDQGWKERPIFGKIRYMNYEGCKRKFNVDGYIMYVNKLVAEVKKRR 508
>gi|212275870|ref|NP_001130580.1| uncharacterized protein LOC100191679 [Zea mays]
gi|194689542|gb|ACF78855.1| unknown [Zea mays]
gi|414868228|tpg|DAA46785.1| TPA: type II CPD DNA photolyase [Zea mays]
Length = 493
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/484 (64%), Positives = 370/484 (76%), Gaps = 12/484 (2%)
Query: 6 PPS--TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN--VPV 61
PP+ + V P R+R+L G GPVVYWM RDQR+ DNWAL+HA + A + P+
Sbjct: 2 PPAIPSLVHPSRVRILHPGG-SHIHGPVVYWMLRDQRLADNWALLHAAELAAASTPAAPL 60
Query: 62 AVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A+AF LF + LGA RQLGF+LRGLR L + F L G AE +P+ VR
Sbjct: 61 AIAFTLFPRPFLLGAHLRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE--LPSLVRRL 118
Query: 120 GASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GAS LV DFSPLR +R D + R + ++ +H+VDAHNVVPVW AS KLEYSAKT
Sbjct: 119 GASALVADFSPLRPVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTF 178
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R K+NK++ EYL++YP + Q +S+DWD++I ++ + VPEI WCE GE +
Sbjct: 179 RSKVNKVINEYLVEYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESS 238
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
AMEVL GSKDGFLTKR+KNY T RN+P KP ALS LSPYLHFG ISAQRCALEA+K R L
Sbjct: 239 AMEVLLGSKDGFLTKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKRRHL 298
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
P+++DTFLEELI+RRELADNFC+YQP YDSL GAWEWARK+L DH DKREHIYT+EQ
Sbjct: 299 SPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQL 358
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG 416
E A+T+DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+ PEEAL+IAIYLNDKY IDG
Sbjct: 359 ENAKTSDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSQPEEALSIAIYLNDKYHIDG 418
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
RDPNGYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR+V KK
Sbjct: 419 RDPNGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLVPRAKK 478
Query: 477 RRAD 480
R+ +
Sbjct: 479 RKTE 482
>gi|168024934|ref|XP_001764990.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
subsp. patens]
gi|162683799|gb|EDQ70206.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
subsp. patens]
Length = 495
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 302/483 (62%), Positives = 373/483 (77%), Gaps = 6/483 (1%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
GRI+ LK G + + GPVVYWM RD R RDNWAL+HAV QA + VPVAVAFNL + F
Sbjct: 12 HAGRIQNLKLG--ENEHGPVVYWMSRDHRSRDNWALLHAVHQAREKGVPVAVAFNLVESF 69
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
L A+AR GFMLRGLR++++N++ I FFLF+G + IP F+++C ASLLV D+S L
Sbjct: 70 LEARARHFGFMLRGLRVVEQNLK-AVNIPFFLFRGNPVETIPEFLKKCNASLLVMDYSSL 128
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R R+ ++ +C V+ SV + EVDAHNVVPVW AS+KLEY A+T+R KIN L E+L +Y
Sbjct: 129 RIGRQWRNGVCENVASSVAVAEVDAHNVVPVWRASDKLEYGARTIRNKINNQLAEFLNEY 188
Query: 192 PMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P+LE P + W G +IDWD++IA V R G+EVPE+ WCE+GEDAA+E L G GF+
Sbjct: 189 PVLENPGKPWEAGAPDTIDWDALIAEVSRFGSEVPEVTWCEAGEDAALEALAGKSKGFVN 248
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
R++NY +RN+P KP LSGLSPYLH+G ISAQRCALEARK RK+ +++D FLEELIV
Sbjct: 249 IRIRNY-VNRNDPSKPTGLSGLSPYLHYGHISAQRCALEARKVRKVHTKSVDAFLEELIV 307
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
R LA+NFC YQPNYD+LKGAW WA++SL+ HA DKRE +YT+ + E +T D LWNA+Q
Sbjct: 308 RGGLAENFCHYQPNYDNLKGAWGWAQESLRIHAKDKREVVYTESELEAGKTHDKLWNAAQ 367
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+EMVY GKMHGFMRMYWAKKILEWT PEEAL IAIYLNDKYE+DGRDPNGYVGCMWSIC
Sbjct: 368 LEMVYYGKMHGFMRMYWAKKILEWTESPEEALRIAIYLNDKYELDGRDPNGYVGCMWSIC 427
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR-RADSLVSGKEKE 489
G+HDQGWKERPVFGKIRYMN++GCKRKF+VDGYI V ++V TKK+ + S + K
Sbjct: 428 GIHDQGWKERPVFGKIRYMNFNGCKRKFNVDGYIMNVNQMVAKTKKQLKEGSTTAAPSKP 487
Query: 490 LCG 492
+ G
Sbjct: 488 VAG 490
>gi|326507630|dbj|BAK03208.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 507
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 317/490 (64%), Positives = 373/490 (76%), Gaps = 11/490 (2%)
Query: 8 STAVQPGRIRVLKQGS----LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
+ V R+RVL G K GPVVYWM RDQR+ DNWAL+HA A + P+AV
Sbjct: 14 TAPVHQARVRVLHPGQGLPPAGAKPGPVVYWMLRDQRLADNWALLHAASLAAASAAPLAV 73
Query: 64 AFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121
AF+LF + L A+ RQLGF+LRGLR L + T +I FFL G IP VR GA
Sbjct: 74 AFSLFPKPFLLSARRRQLGFLLRGLRRLAAD-AATRRIPFFLLTG-GPTEIPALVRRLGA 131
Query: 122 SLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
S LV DFSPLR +R D + R + SV +H+VDAHNVVPVW AS KLEYSAKT R
Sbjct: 132 SALVADFSPLRPVREALDAVVGTLGRDAASVAVHQVDAHNVVPVWAASGKLEYSAKTFRS 191
Query: 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
K+NK+L EYL+++P L Q + + IDWD +I V + +VPEI WCE GE AAM
Sbjct: 192 KMNKVLDEYLVEFPELAQVVPWDREQPKDIDWDMLIDTVCSQAEDVPEIDWCEPGEAAAM 251
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
E L G+KDGFLTKR+K+Y +DRN P KP ALSGLSPYLHFG ISAQRCALEA+K R L P
Sbjct: 252 EALLGTKDGFLTKRIKSYDSDRNYPTKPTALSGLSPYLHFGHISAQRCALEAKKRRHLSP 311
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
+++D FLEELI+RRELADNFC+YQP+YDS+ GAWEWARK+LKDHA+DKREHIYT+EQ E
Sbjct: 312 KSVDAFLEELIIRRELADNFCYYQPHYDSVAGAWEWARKTLKDHAADKREHIYTREQLEN 371
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRD 418
A+TADPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+IAIYLNDKY IDGRD
Sbjct: 372 AKTADPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSIAIYLNDKYHIDGRD 431
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
PNGYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRK DVD YI+YVKR+V KKR+
Sbjct: 432 PNGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKLDVDAYISYVKRLVAQRKKRK 491
Query: 479 ADSLVSGKEK 488
+ ++ K
Sbjct: 492 LEESLNSAAK 501
>gi|164455180|dbj|BAF97093.1| CPD photolyase [Oryza barthii]
Length = 506
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 313/491 (63%), Positives = 374/491 (76%), Gaps = 16/491 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + + + FFLF G + I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAA-SRHLPFFLFTGGPAE-I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALS LSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSALSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>gi|357145905|ref|XP_003573808.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Brachypodium
distachyon]
Length = 503
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 316/503 (62%), Positives = 376/503 (74%), Gaps = 20/503 (3%)
Query: 4 LTPPSTA---------VQPGRIRVLKQG--SLDKKRGPVVYWMFRDQRVRDNWALIHAVD 52
+TPP+T V P R+RVL G + + GPVVYWM RDQR+ DNWAL+HA
Sbjct: 1 MTPPATVSPGPVGPALVHPARVRVLHPGQPTAGARPGPVVYWMLRDQRLVDNWALLHAAS 60
Query: 53 QANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED 110
A P+A+AF+LF + L A+ RQLGF+LRGLR L + F L G E
Sbjct: 61 LAAAAAAPLAIAFSLFPKPFLLSARRRQLGFLLRGLRRLAADAAARRLPFFLLIGGPTE- 119
Query: 111 NIPNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASE 167
IP V GAS L+ DFSPLR +R D + R V +H+VDAHNVVPVW AS
Sbjct: 120 -IPGLVHRLGASALIADFSPLRPVREALDAVVGELRRDDAGVAVHQVDAHNVVPVWAASG 178
Query: 168 KLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPE 226
KLEYSAKT R K++K+L YL+D+P L + + W G + IDWD +I V R+ VPE
Sbjct: 179 KLEYSAKTFRSKVSKVLDGYLVDFPGLPE-VVPWDGELPEDIDWDVLIDRVCREAENVPE 237
Query: 227 IGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC 286
I WCE GE AA+E L GSKDGFLT R+KNY DRN+P KP+ALSGLSPYLHFG ISAQRC
Sbjct: 238 IDWCEPGEAAALETLLGSKDGFLTTRIKNYDMDRNHPTKPKALSGLSPYLHFGHISAQRC 297
Query: 287 ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDK 346
ALEA+K R L P+++D FLEELI+RRELADNFC+YQP+YDSL GAWEWARK+LKDHA DK
Sbjct: 298 ALEAKKCRHLSPKSVDAFLEELIIRRELADNFCYYQPHYDSLAGAWEWARKTLKDHAGDK 357
Query: 347 REHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAI 406
REHIYT+EQ E A+TADPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GP+EAL+IAI
Sbjct: 358 REHIYTREQLENAKTADPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPDEALSIAI 417
Query: 407 YLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAY 466
YLNDKY+IDGRDPNGY GCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+Y
Sbjct: 418 YLNDKYQIDGRDPNGYAGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISY 477
Query: 467 VKRIVGGTKKRRADSLVSGKEKE 489
VKR+V +KKR+++ ++ K
Sbjct: 478 VKRLVAQSKKRKSEEPLNSASKH 500
>gi|164455176|dbj|BAF97091.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 312/499 (62%), Positives = 374/499 (74%), Gaps = 16/499 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
+++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 TVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F L G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADATARHLPFFLLTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AAME L GSK G+LTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAMEALLGSKHGYLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P++ID FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+E E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREHLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+G+VGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGFVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRADSLVSGKEK 488
+ G +KKR A+ ++ +K
Sbjct: 482 LAGQSKKRNAEESLNPVDK 500
>gi|75122626|sp|Q6F6A2.1|PHR_ORYSJ RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=OsCPDII; AltName:
Full=Photoreactivating enzyme
gi|49532671|dbj|BAD26607.1| CPD photolyase [Oryza sativa Japonica Group]
gi|70067250|dbj|BAE06248.1| CPD photolyase [Oryza sativa Japonica Group]
gi|78707888|gb|ABB46863.1| Deoxyribodipyrimidine photo-lyase, putative, expressed [Oryza
sativa Japonica Group]
gi|164455166|dbj|BAF97086.1| CPD photolyase [Oryza sativa]
Length = 506
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 313/491 (63%), Positives = 371/491 (75%), Gaps = 16/491 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>gi|164455170|dbj|BAF97088.1| CPD photolyase [Oryza barthii]
gi|164455178|dbj|BAF97092.1| CPD photolyase [Oryza barthii]
gi|164455184|dbj|BAF97095.1| CPD photolyase [Oryza glaberrima]
gi|164455186|dbj|BAF97096.1| CPD photolyase [Oryza glaberrima]
Length = 506
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 312/491 (63%), Positives = 370/491 (75%), Gaps = 16/491 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFSRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALS LSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSALSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>gi|364506185|pdb|3UMV|A Chain A, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
gi|364506186|pdb|3UMV|B Chain B, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
gi|312261184|dbj|BAC76449.2| CPD-photolyase [Oryza sativa Japonica Group]
Length = 506
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 312/491 (63%), Positives = 371/491 (75%), Gaps = 16/491 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P V+ GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>gi|53147493|dbj|BAD52107.1| CPD photolyase [Oryza sativa Indica Group]
gi|70067245|dbj|BAE06247.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455150|dbj|BAF97078.1| CPD photolyase [Oryza rufipogon]
gi|164455152|dbj|BAF97079.1| CPD photolyase [Oryza rufipogon]
gi|164455154|dbj|BAF97080.1| CPD photolyase [Oryza rufipogon]
gi|164455156|dbj|BAF97081.1| CPD photolyase [Oryza rufipogon]
gi|164455162|dbj|BAF97084.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455164|dbj|BAF97085.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455168|dbj|BAF97087.1| CPD photolyase [Oryza sativa]
gi|164455182|dbj|BAF97094.1| CPD photolyase [Oryza rufipogon]
Length = 506
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 312/491 (63%), Positives = 370/491 (75%), Gaps = 16/491 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISA RCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>gi|164455158|dbj|BAF97082.1| CPD photolyase [Oryza rufipogon]
Length = 506
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 311/491 (63%), Positives = 369/491 (75%), Gaps = 16/491 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP T P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTVPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISA RCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>gi|164455160|dbj|BAF97083.1| CPD photolyase [Oryza meridionalis]
gi|164455174|dbj|BAF97090.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 311/491 (63%), Positives = 370/491 (75%), Gaps = 16/491 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
+++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 TVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F L G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLLTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AAME L GSK G+LTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAMEALLGSKHGYLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P++ID FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+E E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREHLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+G+VGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGFVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>gi|164455172|dbj|BAF97089.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 311/491 (63%), Positives = 369/491 (75%), Gaps = 16/491 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F L G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLLTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AAME L GSK G+LTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAMEALLGSKHGYLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P++ID FLEEL+VRRELADNFC+YQP Y SL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYGSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+E E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREHLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+G+VGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGFVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>gi|222612495|gb|EEE50627.1| hypothetical protein OsJ_30831 [Oryza sativa Japonica Group]
Length = 516
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 313/501 (62%), Positives = 371/501 (74%), Gaps = 26/501 (5%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCP----------EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 339
A+K R L P +++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L
Sbjct: 302 AKKCRHLSPKMFEVTCVLKQSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTL 361
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPE 399
DHA+DKREHIYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPE
Sbjct: 362 MDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPE 421
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
EAL+ AIYLNDKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFD
Sbjct: 422 EALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFD 481
Query: 460 VDGYIAYVKRIVGGTKKRRAD 480
VD YI+YVKR+ G +KKR A+
Sbjct: 482 VDAYISYVKRLAGQSKKRNAE 502
>gi|218184184|gb|EEC66611.1| hypothetical protein OsI_32845 [Oryza sativa Indica Group]
Length = 516
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 311/501 (62%), Positives = 369/501 (73%), Gaps = 26/501 (5%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VV WM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVSWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISA RCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALE 301
Query: 290 ARKARKLCP----------EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 339
A+K R L P +++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L
Sbjct: 302 AKKCRHLSPKMFEVTCVLKQSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTL 361
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPE 399
DHA+DKREHIYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPE
Sbjct: 362 MDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPE 421
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
EAL+ AIYLNDKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFD
Sbjct: 422 EALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFD 481
Query: 460 VDGYIAYVKRIVGGTKKRRAD 480
VD YI+YVKR+ G +KKR A+
Sbjct: 482 VDAYISYVKRLAGQSKKRNAE 502
>gi|76667611|dbj|BAE45635.1| photolyase [Oryza sativa Japonica Group]
Length = 481
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 300/473 (63%), Positives = 354/473 (74%), Gaps = 16/473 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L SKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISA RCALE
Sbjct: 242 CEPGEEAAIEALLSSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDA 474
>gi|22655767|gb|AAN04184.1| Putative CPD photolyase [Oryza sativa Japonica Group]
Length = 565
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 313/551 (56%), Positives = 371/551 (67%), Gaps = 75/551 (13%)
Query: 2 ASLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQ 53
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA
Sbjct: 4 TSVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGL 62
Query: 54 ANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDN 111
A + P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE
Sbjct: 63 AAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE-- 120
Query: 112 IPNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEK 168
IP VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K
Sbjct: 121 IPALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAK 180
Query: 169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIG 228
+EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI
Sbjct: 181 MEYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEID 240
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
WCE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCAL
Sbjct: 241 WCEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCAL 300
Query: 289 EARKARKLCP----------EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKS 338
EA+K R L P +++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+
Sbjct: 301 EAKKCRHLSPKMFEVTCVLKQSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKT 360
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM--------------- 383
L DHA+DKREHIYT+EQ E A+T DPLWNASQ+EMV++GKMHGFM
Sbjct: 361 LMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMSKPLVHIILFDSGQT 420
Query: 384 ----------------------------------RMYWAKKILEWTTGPEEALAIAIYLN 409
RMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 421 FYTIFVQLLFWIWKERKVTVPVRTFSFPNVVVVCRMYWAKKILEWTSGPEEALSTAIYLN 480
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 481 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 540
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 541 LAGQSKKRNAE 551
>gi|307110754|gb|EFN58989.1| CPD photolyase [Chlorella variabilis]
Length = 444
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/445 (60%), Positives = 339/445 (76%), Gaps = 9/445 (2%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M RDQRVRDNWAL+HA +A+K VPVAVAFNL ++L A ARQ GFM+RGLRL+Q ++
Sbjct: 1 MSRDQRVRDNWALLHAAAEASKRGVPVAVAFNLVTEYLHAGARQFGFMVRGLRLMQPKLQ 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154
I FL +G+ + +P V++ GASLLVTDF+PLR R ++ + ++ V HEV
Sbjct: 61 -ALNIPLFLLKGDPLETVPQLVKDTGASLLVTDFAPLRLGRHWREGVAAKIK--VPFHEV 117
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG--TRQSIDWDS 212
DAHNVVPVWVAS+K EY+A+T+R KI+ LPE+L ++P LE P +W+ T +++DWD+
Sbjct: 118 DAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLTEFPQLE-PQPEWSSGVTPEAVDWDA 176
Query: 213 IIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK--RLKNYPTDRNNPLKPRALS 270
++A VL +G EVPE+ WC GEDAAME L G K GFL RL Y RN+P P ALS
Sbjct: 177 LLAEVLERGKEVPEVRWCAPGEDAAMEALSGPK-GFLGSKARLARYEEKRNDPTVPDALS 235
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
GLSPYLHFG +S QR A+EA + + + +++ FLEELIVRRELADN+CFY PNYDSL
Sbjct: 236 GLSPYLHFGHLSPQRAAVEAARNKAVHKASVEGFLEELIVRRELADNYCFYVPNYDSLDA 295
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390
A++WAR++L DH DKREH+YT+EQFEK QT D LWNA+Q EMV+ GKMHGFMRMYWAKK
Sbjct: 296 AYDWARQTLNDHRGDKREHVYTREQFEKGQTHDKLWNAAQAEMVHFGKMHGFMRMYWAKK 355
Query: 391 ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMN 450
ILEW+ PEEAL I+I+LNDKYE+DGRD NGYVGCMWSI G+HDQGW ERPVFGKIR+MN
Sbjct: 356 ILEWSASPEEALEISIWLNDKYELDGRDANGYVGCMWSIAGIHDQGWAERPVFGKIRFMN 415
Query: 451 YSGCKRKFDVDGYIAYVKRIVGGTK 475
++GCKRKFDV+ Y+A + +V K
Sbjct: 416 FAGCKRKFDVEKYVARIGALVRDIK 440
>gi|302843525|ref|XP_002953304.1| class II photolyase [Volvox carteri f. nagariensis]
gi|300261401|gb|EFJ45614.1| class II photolyase [Volvox carteri f. nagariensis]
Length = 589
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/485 (56%), Positives = 347/485 (71%), Gaps = 29/485 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN------------ 58
V P RIRVLK+G++ GPVV+WM RDQR+ DNWAL+HA++ A +N+
Sbjct: 33 VNPKRIRVLKEGTIGN--GPVVFWMSRDQRIEDNWALLHAIEVAQQNHRQQSAAASSGGG 90
Query: 59 ---------VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAE 109
VAVAFNL FLGA ARQ GFMLRGLR LQ +E I FFL +G+
Sbjct: 91 GSSSSSSSEPQVAVAFNLVPAFLGAGARQFGFMLRGLRELQPKLEAK-GIAFFLLKGDPA 149
Query: 110 DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKL 169
+P+ V GA LLVTD+SPLR R+ ++++C+ V V +HEVDAHNVVPVWVAS+K
Sbjct: 150 RTLPDLVTRLGAGLLVTDYSPLRLGRQWREQVCSSVP--VPVHEVDAHNVVPVWVASDKR 207
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG--TRQSIDWDSIIAAVLRKGAEVPEI 227
E A+TLR KI+K LPE+L D+P + Q + W+ + ++W++++ VL +G+ VPE+
Sbjct: 208 EVGARTLRPKIHKHLPEFLTDFPEVPQ-LPPWSHEVKPEPVNWETLLEEVLTRGSAVPEV 266
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
WC+ GEDAA++ L+G + RL Y + RN+P PRALS LSPYLHFGQ++ QR A
Sbjct: 267 DWCKPGEDAALQALQGPAGFLSSTRLSLYDSKRNDPATPRALSNLSPYLHFGQLAPQRAA 326
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
LEA K R A+++FLEEL+VRREL+DNFC Y PNYDSL A EWAR++L+ H DKR
Sbjct: 327 LEAAKHRAKFKAAVESFLEELVVRRELSDNFCHYTPNYDSLACAAEWARETLEKHRGDKR 386
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIY 407
E +YT+EQ E +T D LWNA Q EMV+ GKMHG+MRMYWAKKILEWT GPEEA+ IAIY
Sbjct: 387 EFLYTREQLEAGRTHDELWNACQWEMVHVGKMHGYMRMYWAKKILEWTPGPEEAIEIAIY 446
Query: 408 LNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
LND+YE+DGRDP+GYVG MWS+ G+HD GW ERP+FGKIRYMNY+GCKRKFD+ Y AYV
Sbjct: 447 LNDRYELDGRDPSGYVGVMWSMAGIHDMGWTERPIFGKIRYMNYNGCKRKFDIKAYCAYV 506
Query: 468 KRIVG 472
R+VG
Sbjct: 507 DRLVG 511
>gi|5081541|gb|AAD39433.1|AF129458_1 class II DNA photolyase [Chlamydomonas reinhardtii]
Length = 612
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/472 (58%), Positives = 342/472 (72%), Gaps = 11/472 (2%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVD--QANKNNVPVAVAFNLF 68
V P R+RVLK GS+ K GPVVYWM RDQR+ DNWAL+HA++ Q + VAVAFNL
Sbjct: 50 VNPKRVRVLKPGSIGK--GPVVYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLV 107
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
FLGA ARQ GFMLRGLR L +E I F+L +G+ +P V GA LLVTD+
Sbjct: 108 PAFLGAGARQFGFMLRGLRQLAPRLEAR-GIKFYLLKGDPAHTLPQLVSGLGAGLLVTDY 166
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
SPLR R +D++C+ + SV +HEVDAHNVVPVW ASEK E A+TLR KI+K LPE+L
Sbjct: 167 SPLRLGRTWRDQVCSALG-SVPVHEVDAHNVVPVWAASEKREVGARTLRPKIHKALPEFL 225
Query: 189 IDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
++P + + WT +++DWD +I+ VL +GA+VPE+ WC GE+AA+E L G +
Sbjct: 226 REFPEVPT-LPAWTPAVAPEAVDWDGLISEVLSRGADVPEVEWCTPGEEAALEALTGPR- 283
Query: 247 GFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
GFL+ RL Y T RN+P P ALSGLSPYLHFGQ++ QR ALEA K R A++++L
Sbjct: 284 GFLSPARLSLYDTKRNDPATPSALSGLSPYLHFGQLAPQRAALEAAKHRAKYKAAVESYL 343
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
EEL+VRRELADNFC Y P YDSL+ A EWAR SL H +DKRE +YT++Q E T D L
Sbjct: 344 EELVVRRELADNFCHYCPTYDSLEAAAEWARDSLDKHRTDKREFLYTRDQLECGATHDEL 403
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
WNA+Q+EMV+ GKMHGFMRMYWAKKILEWT GPE+A+ AIYLND+YE+DGRDP GY G
Sbjct: 404 WNAAQLEMVHVGKMHGFMRMYWAKKILEWTQGPEQAIEWAIYLNDRYELDGRDPGGYTGV 463
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
+WS+ GVHD GW ER VFGKIRYMNY+GCKRKFD+ Y+AYV + V K +
Sbjct: 464 LWSMAGVHDMGWAERAVFGKIRYMNYNGCKRKFDIKAYVAYVSKAVAEAKAK 515
>gi|81157959|dbj|BAE48230.1| CPD photolyase [Chlorella pyrenoidosa]
Length = 448
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/443 (61%), Positives = 333/443 (75%), Gaps = 8/443 (1%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
WM RDQRVRDNWALI+A A K VPVAVAF+L +FLGA ARQ GFM+RGL+L+Q +
Sbjct: 1 WMSRDQRVRDNWALIYAAQAAAKRGVPVAVAFSLVTEFLGAGARQFGFMVRGLQLIQPKL 60
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
E I FFL +G+ + IP V++ GASLLVTD++PLR R+ + + ++ V HE
Sbjct: 61 E-ALNIPFFLLKGDPSETIPKLVQDTGASLLVTDYAPLRLGRQWRQAVAEQLE--VPFHE 117
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG--TRQSIDWD 211
VDAHNVVPVWVAS+K EY+A+T+R KI+ LPE+L +YP L Q W +++DW+
Sbjct: 118 VDAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLKEYPELPQQA-TWAHEVKPEAVDWE 176
Query: 212 SIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK-RLKNYPTDRNNPLKPRALS 270
++IA VL +G VPE+ WC+ GEDAAME L G K GFL+K RL Y RN+P ALS
Sbjct: 177 ALIAEVLERGKAVPEVDWCKPGEDAAMEALAGGK-GFLSKARLSKYDAQRNDPTVADALS 235
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
LSPYLHFG ++ QR A+EA K + +++ FLEEL+VRREL+DN+C Y NYDSL
Sbjct: 236 NLSPYLHFGHLAPQRAAIEAAKHKSTHKASVEGFLEELVVRRELSDNYCHYVENYDSLDA 295
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390
A++WAR++L DH +DKREH+YTKEQFEK T D LWNA+Q+EMV+ GKMHGFMRMYWAKK
Sbjct: 296 AYDWARQTLNDHRNDKREHVYTKEQFEKGATHDKLWNAAQLEMVHCGKMHGFMRMYWAKK 355
Query: 391 ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMN 450
ILEWT PEEAL IAIYLNDKYE+DGRDPNGYVGCMWSI G+HDQGW ER VFGKIRYMN
Sbjct: 356 ILEWTASPEEALEIAIYLNDKYELDGRDPNGYVGCMWSIAGIHDQGWAERAVFGKIRYMN 415
Query: 451 YSGCKRKFDVDGYIAYVKRIVGG 473
Y+GCKRKFDVD Y+A + +V
Sbjct: 416 YAGCKRKFDVDKYVARINAMVSS 438
>gi|384252096|gb|EIE25573.1| CPD photolyase [Coccomyxa subellipsoidea C-169]
Length = 447
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 264/446 (59%), Positives = 330/446 (73%), Gaps = 6/446 (1%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M RDQRV+DNWAL+HA + A K++ PVAV FNL +L A ARQ GFMLRGL+L+Q +E
Sbjct: 1 MSRDQRVQDNWALLHAAEVAAKSHAPVAVVFNLVPSYLNAGARQFGFMLRGLKLMQPKLE 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154
I FFL +G+ +P V+ GASLLVTDF+PLR R+ +D++ ++S V HEV
Sbjct: 61 -ALNIPFFLLKGDPVQTVPELVQRTGASLLVTDFAPLRLGRQWRDQVAEKLS--VPFHEV 117
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML-EQPIEKWTGTRQSIDWDSI 213
DAHNVVP W AS+K EY A+T+R KI++ LPE+L YP L +QP + ++DWD+
Sbjct: 118 DAHNVVPCWEASDKREYGARTIRPKIHRQLPEFLQPYPDLGKQPKWELDVKPDAVDWDAE 177
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK-RLKNYPTDRNNPLKPRALSGL 272
IAAV+ +G +VPE+ W + GEDAAME L G K GFL+K RL Y T RNNP P+ALS L
Sbjct: 178 IAAVVERGKDVPEVDWVKPGEDAAMEALLGEK-GFLSKERLSIYNTKRNNPNFPKALSQL 236
Query: 273 SPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW 332
SP+LHFG +SAQR ALEA K R E ++ F EE +VRREL+DN+CFY PNYD+L +
Sbjct: 237 SPFLHFGHLSAQRAALEASKLRSKFKEGVEAFNEECVVRRELSDNYCFYTPNYDTLDACY 296
Query: 333 EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKIL 392
WAR++L+ H +DKRE IYT+E+ E+ +T D LWNA+Q+EMV++GKMHGFMRMYWAKKIL
Sbjct: 297 PWARETLQKHTADKREFIYTREELEEGKTHDLLWNAAQLEMVHHGKMHGFMRMYWAKKIL 356
Query: 393 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYS 452
EWT PEEAL IAI LNDKYEIDGRDPNGYVGCMWSI G+HDQGW ERPVFGKIRYMN
Sbjct: 357 EWTNSPEEALEIAIVLNDKYEIDGRDPNGYVGCMWSIGGIHDQGWGERPVFGKIRYMNAK 416
Query: 453 GCKRKFDVDGYIAYVKRIVGGTKKRR 478
GC+RKFD YI + ++ K ++
Sbjct: 417 GCQRKFDCKAYIKLIDDMMAKVKAQQ 442
>gi|255070203|ref|XP_002507183.1| predicted protein [Micromonas sp. RCC299]
gi|226522458|gb|ACO68441.1| predicted protein [Micromonas sp. RCC299]
Length = 579
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 271/487 (55%), Positives = 342/487 (70%), Gaps = 31/487 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R+RVLK+G + GPV+YW RDQRVRDNWALI+A + AN+ PV V F+L +
Sbjct: 5 VNEKRVRVLKEGKVGT--GPVIYWCSRDQRVRDNWALIYACETANETGAPVVVVFSLVTR 62
Query: 71 FLGAKARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV 125
FLGA ARQ FML+GLR LL +NI+ F L +G+ +P F +ECGASL+V
Sbjct: 63 FLGAGARQFCFMLKGLREMEQALLAKNIK------FVLLEGDPSLTVPRFAKECGASLIV 116
Query: 126 TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
D SPLR R + I + V +HEVDAHNVVPVW AS+KLE A+TLRGK+ KL P
Sbjct: 117 ADQSPLRLGRTWRVAIASSVD--CPLHEVDAHNVVPVWEASQKLEVGARTLRGKLAKLYP 174
Query: 186 EYLIDYPMLEQPI--EKWTGTRQS------IDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
E+L+++P E P+ E W + IDW+++I GA VPE+ W GE AA
Sbjct: 175 EFLVEFP--ETPVVKETWPCAAAAALPTIGIDWEALIVRARNDGAAVPEVTWAVPGEFAA 232
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
L + FLT+RLK Y RN+P KP+ALSGLSPYLHFGQISAQRCALEAR+ K
Sbjct: 233 HATL----EHFLTRRLKYY-EHRNDPAKPQALSGLSPYLHFGQISAQRCALEARRYAKSS 287
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGA-WEWARKSLKDHASDKREHIYTKEQF 356
+A+D FLEELIVRRELADNFC+Y P YD+++G +EWA++++++H+ DKR ++Y+ +QF
Sbjct: 288 NKAVDVFLEELIVRRELADNFCWYSPKYDTIEGQKYEWAKETVREHSKDKRAYLYSLQQF 347
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG 416
E +T D LWNA+Q+EMV+ GKMHGFMRMYWAKKI+EWT P++AL AI+LNDKY++DG
Sbjct: 348 ENGETHDDLWNAAQLEMVHGGKMHGFMRMYWAKKIMEWTESPDQALEFAIHLNDKYQLDG 407
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
RDP+GYVGCMWSI GVHDQGW ERP+FGKIRYM YSGC +KF V YI V +V K
Sbjct: 408 RDPSGYVGCMWSIVGVHDQGWSERPIFGKIRYMAYSGCVKKFKVQDYIKRVDELVTAVKA 467
Query: 477 RRADSLV 483
D+ V
Sbjct: 468 GEKDTAV 474
>gi|424513339|emb|CCO65961.1| CPD photolyase [Bathycoccus prasinos]
Length = 645
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/477 (53%), Positives = 330/477 (69%), Gaps = 19/477 (3%)
Query: 11 VQPGRIRVLK-QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
V P R+ ++ Q L + GP+VYWM RDQRV DNWA+++A++ ANK P+ V FN+
Sbjct: 136 VHPDRVMLINDQPILREGNGPIVYWMSRDQRVNDNWAMLYAIELANKEKKPLVVVFNVVT 195
Query: 70 QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDN--IPNFVRECGASLLVTD 127
+FLGA ARQ GFMLRGLR ++ +EE I F L G E N I F E AS +VTD
Sbjct: 196 KFLGAGARQFGFMLRGLREVESALEER-DIPFKLLHGGDEPNAEIEKFCNEVNASAVVTD 254
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
FSPLR + +D SV + VDAHN+VP WVAS KLE A+TLRGK+ KL ++
Sbjct: 255 FSPLRLGLKWRDDFAKETKRSVRV--VDAHNIVPCWVASPKLEVGARTLRGKLAKLYGDF 312
Query: 188 LI----DYPMLEQPIEKWTGTRQSI--DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
++ ++P +E +S+ DWD ++ L +G +VPE+ W GE AAM VL
Sbjct: 313 MVPFPDNFPNVENKDAALHAKIKSVKTDWDDVLGQALERGKDVPEVTWAVPGEKAAMAVL 372
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EA 300
D FLTKR+ Y RN+P KP+ALSGLSPYLHFGQIS QRCA++A +A+K +A
Sbjct: 373 ----DNFLTKRMSLYGL-RNDPAKPQALSGLSPYLHFGQISGQRCAMKALEAKKGSNGKA 427
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGA-WEWARKSLKDHASDKREHIYTKEQFEKA 359
+D F EEL+VRRELADNFC+Y P YD+++G ++WA+ +L+ HA DKRE+ YT E+FE+A
Sbjct: 428 VDVFFEELVVRRELADNFCYYSPQYDTIEGQKYDWAKDTLRMHAGDKREYTYTYEEFEQA 487
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
+T D LWNA+Q E+VY GKMHGFMRMYWAKKILEW+ PE AL AI LND++ +DGRDP
Sbjct: 488 KTHDNLWNAAQRELVYGGKMHGFMRMYWAKKILEWSDTPENALKYAIALNDRWSLDGRDP 547
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
+GYVGCMWSI GVHDQGWKER +FGKIRYM YSGC++KF + YI V +V +K
Sbjct: 548 SGYVGCMWSIVGVHDQGWKEREIFGKIRYMAYSGCEKKFKIPEYIKRVDALVEAVQK 604
>gi|145345173|ref|XP_001417095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577321|gb|ABO95388.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 506
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/476 (52%), Positives = 317/476 (66%), Gaps = 11/476 (2%)
Query: 6 PPSTAVQPGRIRVLKQGSLDKK--RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
P + R R L +G+ + PVVYW+ RDQRVRDNWAL+ A D A N+ PV +
Sbjct: 2 PSALCASKKRYRALTRGTKPEAGPNAPVVYWLSRDQRVRDNWALLRACDVARANDAPVVI 61
Query: 64 AFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123
AFNL +FLGA ARQ GFMLRGLR L+ + + E I ++ GA
Sbjct: 62 AFNLLTKFLGAGARQFGFMLRGLRELEGAAKAKNVTFAMTYGDEPAIAIDALAKKIGAKT 121
Query: 124 LVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK 182
+V DFSPLR+ + + ++ + S E DAHNVVP W AS+KLE A+TLRG++ K
Sbjct: 122 IVCDFSPLRDGLKWRKELAALCEARSAHCEECDAHNVVPCWEASDKLEVGARTLRGRLAK 181
Query: 183 LLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
PE+L ++P + + K++G ++ WD IIA L +G VPE+ W GE AA VL
Sbjct: 182 RYPEFLHEFPEVPDDLPKYSGPALDAVKWDDIIAEALSRGQAVPEVTWAIPGETAAHAVL 241
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA-RKLCPEA 300
D F+ R+K Y RN+P KP+ALSGLSP+LHFGQIS QRCALEA+KA K P A
Sbjct: 242 ----DDFVNSRMKLY-EKRNDPSKPQALSGLSPWLHFGQISGQRCALEAKKAVGKASPPA 296
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGA-WEWARKSLKDHASDKREHIYTKEQFEKA 359
++F EEL+VRREL+DNFC+Y P YD ++G ++WA+ +L+ HASDKR ++Y+ E+ E+A
Sbjct: 297 YESFFEELVVRRELSDNFCYYSPKYDQIEGQKYDWAKDTLRLHASDKRPYLYSLEELERA 356
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
+T D LWNA+Q E+ Y GKMHGF RMYWAKKILEWT PE+AL AIYLND Y +DGRDP
Sbjct: 357 KTHDDLWNAAQRELRYGGKMHGFCRMYWAKKILEWTESPEQALKFAIYLNDTYSLDGRDP 416
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
+GYVGCMWSI GVHDQGWKER VFGKIRYM Y K+KF + YIA V +V K
Sbjct: 417 SGYVGCMWSIVGVHDQGWKEREVFGKIRYMAYDSTKKKFSIPDYIARVNALVKAAK 472
>gi|255078656|ref|XP_002502908.1| DNA photolyase [Micromonas sp. RCC299]
gi|226518174|gb|ACO64166.1| DNA photolyase [Micromonas sp. RCC299]
Length = 478
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/484 (54%), Positives = 321/484 (66%), Gaps = 31/484 (6%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P R+R L+ G + GPVVYWM RDQR DNWAL HA+ A ++ P+ V F L +F
Sbjct: 1 PRRVRSLRGGDVPVGEGPVVYWMSRDQRAMDNWALCHALAVAREHRRPLHVVFALVPEFA 60
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-EAEDNIPNFVRECGASLLVTDFSPL 131
A ARQ FMLRGLR L+ + + I F L QG + ++P G S+LVTDFSPL
Sbjct: 61 NAGARQYCFMLRGLRELESRLRD-LGIPFHLAQGPDPGVSVPAAAERLGCSMLVTDFSPL 119
Query: 132 REIRRCKDKICNRVSD-SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
R R +D + + V + EVDAHNVVP WVASEK EY+A+T+R KIN L ++L D
Sbjct: 120 RIGRAWRDSVTTLLCPVDVPVAEVDAHNVVPAWVASEKQEYAARTIRKKINGRLTDFLTD 179
Query: 191 YPMLE---------------QPIEKWTGTRQSIDWDSII-AAVLRKGAEVPEIGWCES-- 232
+P +E P+ + SIDWD +I AA G VPE+
Sbjct: 180 FPTVEDVREAATEAAAGAEKHPVR----SAGSIDWDGLIDAARAGAGGAVPEVLSPSPPR 235
Query: 233 ----GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
GE AA+ L G+ FL RL Y + RN+P P ALSGLSPYLHFGQ+SAQRCA+
Sbjct: 236 SRAPGETAALAALFGTSASFLPNRLALYGS-RNDPNVPEALSGLSPYLHFGQLSAQRCAV 294
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
EA K R PEA+D+FLEELIVRRELADNFC + P+YDS+ GA WAR+SL HASD RE
Sbjct: 295 EATKHRAKHPEAVDSFLEELIVRRELADNFCLHNPHYDSIAGAPGWARESLALHASDARE 354
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWT-TGPEEALAIAIY 407
YT E+ E ++T D LWNA+Q E+ + G MHGF+RMYWAKKILEWT GPEEAL AIY
Sbjct: 355 FAYTLEELEHSRTHDELWNAAQKELTHLGTMHGFLRMYWAKKILEWTGEGPEEALRRAIY 414
Query: 408 LNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
LND+Y++DGRDPNGYVGCMW+ICGVHDQGWKER VFGK+RYMNY+GCKRKF + Y+ V
Sbjct: 415 LNDRYQLDGRDPNGYVGCMWAICGVHDQGWKERDVFGKVRYMNYAGCKRKFKIAEYVERV 474
Query: 468 KRIV 471
+R V
Sbjct: 475 EREV 478
>gi|327284572|ref|XP_003227011.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Anolis
carolinensis]
Length = 535
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/451 (52%), Positives = 315/451 (69%), Gaps = 10/451 (2%)
Query: 15 RIRVLKQGSLDKKRGP--VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+R++ + S D K G ++YWM RDQRV+DNWA ++A A K N+P+ VAF L +FL
Sbjct: 82 RVRMISENS-DLKEGAQGILYWMSRDQRVQDNWAFLYAQRLALKQNLPLHVAFCLVPKFL 140
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A RQ GFML+GL+ + +E I F L G A+D +P FV + + +VTDF+PLR
Sbjct: 141 EATIRQFGFMLKGLKEVAEECQE-LSIPFHLLIGFAKDTLPPFVAKHNIAGVVTDFAPLR 199
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ R+ V +VDAHNVVP WVASEK EY A+T+R KI+ L E+L +P
Sbjct: 200 VPMQWVQEVQERLPPDVPFVQVDAHNVVPCWVASEKQEYGARTIRRKIHDRLCEFLTGFP 259
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ Q + + IDWD+ +A L VPE+ W + G A + VL F+ +R
Sbjct: 260 PVIQHPHQAASQAEPIDWDAC-SASLEVDRSVPEVEWAKPGSAAGLLVL----GEFVQER 314
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK + +DRNNP + ALS LSP+ HFGQ+S QR LE RK R C E+++ F+EE ++RR
Sbjct: 315 LKFFSSDRNNPNRA-ALSNLSPWFHFGQVSVQRAILEVRKHRTRCRESVEAFIEEALIRR 373
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
ELADNFCFY PNYD ++GA+EWA+ +LK HA+DKR H+YT +Q E+ +T D LWNA+Q++
Sbjct: 374 ELADNFCFYNPNYDKVEGAYEWAKTTLKLHATDKRPHLYTLKQLEEGKTHDQLWNAAQLQ 433
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV+ GKMHGF+RMYWAKKILEWT PEEAL +IYLND+YE+DGRDPNGYVGCMWS+CG+
Sbjct: 434 MVHEGKMHGFLRMYWAKKILEWTNSPEEALKFSIYLNDRYELDGRDPNGYVGCMWSVCGI 493
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
HDQGW ER VFGKIRYMNY+GC +KFDV +
Sbjct: 494 HDQGWAERAVFGKIRYMNYAGCTKKFDVGQF 524
>gi|356497173|ref|XP_003517437.1| PREDICTED: LOW QUALITY PROTEIN: deoxyribodipyrimidine
photo-lyase-like [Glycine max]
Length = 360
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/308 (73%), Positives = 257/308 (83%), Gaps = 3/308 (0%)
Query: 186 EYLIDYP--MLEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
+YLID+P +E P KW T IDWD +I VLR+GAEVPE+GWCE GE AA EVL
Sbjct: 46 DYLIDFPDIEVEPPTRKWMATENHYIDWDVLIGEVLRRGAEVPEVGWCEPGEIAASEVLM 105
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G K+GFLTKRLK Y DRNNP P ALSGLSPYLHFGQISAQRCALEA K + P+AID
Sbjct: 106 GIKNGFLTKRLKGYSLDRNNPCDPNALSGLSPYLHFGQISAQRCALEAGKQQNSHPQAID 165
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
FLEELIVRRELADN+CFYQP+YDSLKGAW WA+ +L +HA+DKREHIYT+EQ EK TA
Sbjct: 166 AFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLIEHATDKREHIYTREQLEKTLTA 225
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DPLWNASQ+E V+ GKMHGF RMYWAKKILEWT GPEEAL I++YLNDKYE+DGRDPNGY
Sbjct: 226 DPLWNASQLETVHYGKMHGFTRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGY 285
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
VGCMWSICGVHDQGWKERP+FGKIRYMNY+GCKRKFDVD YIAYV ++V KKR+A+++
Sbjct: 286 VGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVDKLVRELKKRKAENM 345
Query: 483 VSGKEKEL 490
+S EK L
Sbjct: 346 LSQXEKVL 353
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MASLTPPSTAVQPGRIRVLKQG-SLDKKRGPVVYWMFRDQRVRD 43
MAS VQ G +R LK+G + GPVVYWMFRDQRVRD
Sbjct: 1 MASTASSPMTVQAGLVRTLKEGLGGEAGSGPVVYWMFRDQRVRD 44
>gi|440797984|gb|ELR19058.1| type II CPD DNA photolyase [Acanthamoeba castellanii str. Neff]
Length = 577
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/479 (50%), Positives = 325/479 (67%), Gaps = 19/479 (3%)
Query: 15 RIRVLKQ--GSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + G +K VVYWM RDQR DNWAL++A A K+ VP+AVAF L F
Sbjct: 31 RVRVLHEPKGKEGRKATGVVYWMSRDQRANDNWALLYAQQLAVKSGVPLAVAFCLLPSFK 90
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
GA R GFM+RGL +++ + + I L +G +D +P ++ GAS LV DFSPLR
Sbjct: 91 GASIRHFGFMVRGLTEVEKTLN-SRGIPMLLLKGLPQDELPKALKTYGASHLVCDFSPLR 149
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ ++++ + + ++EVDAHN+VP+W S K EY+A+T+R KI+K +P+YL ++P
Sbjct: 150 IGRKWREEVAE--ATNAFVYEVDAHNLVPLWEVSPKQEYAARTIRPKIHKQVPKYLHEFP 207
Query: 193 MLEQPIE-----KWTGTRQSIDWDSIIAAVLRK-GAEVPEIGWCESGEDAAMEVLKGSKD 246
L + KW+ ++WDS+ + V VPE+ W + GE +L D
Sbjct: 208 ALRDHSKRNGGNKWSPAIPEVNWDSVWSYVREHVDDSVPELDWLKPGEKEGRRML----D 263
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
FLTK+LK+Y + RN P++ S LS YLH+GQ+SAQR LEA K + E+ + + E
Sbjct: 264 LFLTKKLKDYNSKRNTPVED-GQSNLSAYLHYGQLSAQRIILEAMKHKAKAKESYEAYFE 322
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
ELIVRRELADNFC+Y +YD +G +WARKSL++HA+DKR +YT E+ E+ +T D LW
Sbjct: 323 ELIVRRELADNFCYYNQHYDQFEGFPDWARKSLEEHAADKRSSLYTYEELERGKTHDELW 382
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
NA+QMEMV+ GKMHGFMRMYWAKKILEWT P++A+ A+ LND YEIDGRDPNGYVGC
Sbjct: 383 NAAQMEMVHLGKMHGFMRMYWAKKILEWTESPQQAMQFAVKLNDHYEIDGRDPNGYVGCA 442
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG---GTKKRRADSL 482
W+I GVHDQGWKERPVFGK+RYMNY+GCKRKFDVD Y+ + + + GTKK A ++
Sbjct: 443 WAIGGVHDQGWKERPVFGKVRYMNYAGCKRKFDVDAYVRKMAKFMSEPTGTKKTEASAV 501
>gi|340380472|ref|XP_003388746.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 489
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/465 (50%), Positives = 317/465 (68%), Gaps = 11/465 (2%)
Query: 3 SLTPPSTAVQPGRIRVLKQGSLDKK---RGPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
SL ++ R R++ + + K +GPV+YWM RDQRV+DNW L+++ + ANK+ V
Sbjct: 19 SLLIAGSSFNMKRCRLITKPTAGKSSIVKGPVLYWMSRDQRVQDNWGLVYSQELANKHGV 78
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
P+ VAF L +FL A RQ FM+ GL+ +++ + + +I F L G+A+ +P+F+ +
Sbjct: 79 PLLVAFTLVPKFLDATWRQYSFMMSGLQEVEKELLK-LKIPFHLLLGKAQSCLPSFIAKE 137
Query: 120 GASLLVTDFSPLR-EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
S++V DFSPLR + K+ V + +VDAHN+VPVW+AS+K EY+A+T+R
Sbjct: 138 SVSVVVCDFSPLRVPLGWVKETGAELDKIKVPLVQVDAHNIVPVWLASDKQEYAARTIRN 197
Query: 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
KI+K LPE+L ++P + T +S +W + L V E+ W G +A +
Sbjct: 198 KIHKFLPEFLTEFPPVTVHTHNSKLTMKSTNWIKARES-LEVDMTVSEVSWATPGTNAGL 256
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
+VL D F TKRLK + RN+P K +LS LSP+ HFGQ+ QR L+ +
Sbjct: 257 KVL----DDFCTKRLKFFAAQRNDPNKD-SLSNLSPWYHFGQVGVQRAILKVKSYSSKHS 311
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
E++ ++EE +VRRELADNFC+Y P+YDS+ GA +WA+ +LK H DKRE+IYT+EQFE
Sbjct: 312 ESVSAYIEEAVVRRELADNFCYYNPHYDSISGAAQWAQDTLKAHKKDKREYIYTQEQFES 371
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRD 418
+ T DPLWNA+Q++MV GKMHGF+RMYWAKKILEWT+ PEE L IAIYLNDKYEIDGRD
Sbjct: 372 SSTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKILEWTSSPEEGLRIAIYLNDKYEIDGRD 431
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
PNGYVGCMWSICG+HDQGW ER VFGKIRYMNY GCKRKFDV +
Sbjct: 432 PNGYVGCMWSICGIHDQGWAERSVFGKIRYMNYQGCKRKFDVGQF 476
>gi|147904876|ref|NP_001089127.1| CPD photolyase-like [Xenopus laevis]
gi|77799777|dbj|BAE46749.1| CPD photolyase-like [Xenopus laevis]
gi|126631428|gb|AAI33745.1| LOC733427 protein [Xenopus laevis]
Length = 557
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/448 (51%), Positives = 312/448 (69%), Gaps = 10/448 (2%)
Query: 15 RIRVLK-QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R R+L + L + +VYWM RDQRV+DNWA ++A A K +P+ V F L +FL
Sbjct: 104 RARLLSTEADLKEDAQGIVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLD 163
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R GFML+GL+ + +E I F L G A+D +PNFV++ +VTDFSPLR
Sbjct: 164 ATIRHYGFMLKGLQEVAEECKE-LNIPFHLLIGYAKDILPNFVKDHAIGGVVTDFSPLRV 222
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
+ + + + + V + +VDAHN+VP WVAS K EY A+T+R K++ L ++L ++P
Sbjct: 223 PLQWVEDVGKCLPEDVPLVQVDAHNIVPCWVASIKQEYGARTIRRKVHDQLSQFLTEFPP 282
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+++ P E +++DWD + L V E+ W + G +A VL+ F+++R
Sbjct: 283 VIKHPYEP-KFEAETVDWDKCYKS-LEVDRTVGEVEWAKPGTNAGFNVLQS----FISER 336
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK++ +DRNNP ALS LSP+ HFGQ+S QR LE +K R E++D+F+EE +VRR
Sbjct: 337 LKHFNSDRNNP-NQNALSNLSPWFHFGQLSVQRAILEVQKYRSKFKESVDSFVEEAVVRR 395
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
ELADNFCFY NYD ++GA++WA+ +LKDHA DKR H+YT E+ E +T DPLWNA+Q++
Sbjct: 396 ELADNFCFYNKNYDKIEGAYDWAKNTLKDHAKDKRTHLYTLEKLEAGKTHDPLWNAAQLQ 455
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV+ GKMHGF+RMYWAKKILEWT+ PEEAL ++YLND+YE+DGRDPNGYVGCMWSICG+
Sbjct: 456 MVHEGKMHGFLRMYWAKKILEWTSSPEEALHFSLYLNDRYELDGRDPNGYVGCMWSICGI 515
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDV 460
HDQGW ER VFGKIRYMNY GCKRKFDV
Sbjct: 516 HDQGWAERAVFGKIRYMNYQGCKRKFDV 543
>gi|50752305|ref|XP_422729.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Gallus gallus]
Length = 499
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/450 (52%), Positives = 312/450 (69%), Gaps = 8/450 (1%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R R++ +GS L + ++YWM RDQRV+DNWA ++A A K +P+ V F L FL
Sbjct: 49 RARLVSRGSELKEGAECILYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPAFLD 108
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R GFMLRGLR + + E I F + G +D +P+FV E G LVTDF PLR
Sbjct: 109 ATIRHYGFMLRGLREVAKECAE-LDIPFHVLLGCPKDVLPSFVVEHGVGGLVTDFCPLRV 167
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R+ +++ R+ + V +VDAHN+VP WVAS K EYSA+T+R KI+ LPE+L ++P
Sbjct: 168 PRQWVEEVKERLPEDVPFAQVDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFPP 227
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + + I WD+ ++ L+ V E+ W G A + +L+ F+T+RL
Sbjct: 228 VIRHPHPPPNPPEPIAWDACYSS-LQVDRTVTEVAWATPGTAAGLAMLQS----FITERL 282
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
K++ + RN+P K ALS LSP+ HFGQ+S QR LE +K R++ E++D F+EE +VRRE
Sbjct: 283 KSFGSQRNDPNKA-ALSNLSPWFHFGQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRRE 341
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
LA+NFC+Y NYDS++GA++WA+ +LK HA DKR +Y Q E+A T DPLWNA+Q++M
Sbjct: 342 LAENFCYYNENYDSVRGAYDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPLWNAAQLQM 401
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V GKMHGF+RMYWAKKILEWT PEEAL AIYLND+YE+DG DPNGYVGC+WSICG+H
Sbjct: 402 VREGKMHGFLRMYWAKKILEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSICGIH 461
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
DQGWKER VFGKIRYMNY+GCKRKFDVD +
Sbjct: 462 DQGWKERDVFGKIRYMNYAGCKRKFDVDQF 491
>gi|326925994|ref|XP_003209191.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Meleagris
gallopavo]
Length = 503
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/450 (52%), Positives = 307/450 (68%), Gaps = 8/450 (1%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R R++ +GS L + ++YWM RDQRV+DNWA ++A A K +P+ V F L FL
Sbjct: 53 RARLVSRGSELKEGAECILYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPTFLD 112
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R GFMLRGLR + E I F L G +D +P+FV E LVTDF PLR
Sbjct: 113 ATIRHYGFMLRGLREVAEECAE-LDIPFHLLLGCPKDVLPSFVVEHSVGGLVTDFCPLRV 171
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R+ +++ R+ + V +VDAHN+VP WV S K EYSA+T+R KI+ LPE+L ++P
Sbjct: 172 PRQWVEEVKERLPEDVPFAQVDAHNIVPCWVTSPKQEYSARTIRAKIHSKLPEFLTEFPP 231
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + + I WD+ ++ L+ V E+ W G A + +L+ F+TKRL
Sbjct: 232 VIRHPHPPPNPPEPIAWDACYSS-LQVDHTVTEVAWATPGTAAGLAMLQS----FITKRL 286
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
K++ + RN+P K ALS LSP+ HFGQ+S QR LE +K R E++D F+EE +VRRE
Sbjct: 287 KSFGSQRNDPNKA-ALSNLSPWFHFGQVSTQRAILEVQKHRCAYKESVDAFVEEAVVRRE 345
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
LA+NFC+Y NYDS++GA++WA+ +LK HA DKR +Y Q E+A T DPLWNA+Q++M
Sbjct: 346 LAENFCYYNENYDSVRGAYDWAQSTLKLHAKDKRPFLYELPQLEQATTHDPLWNAAQLQM 405
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V GKMHGF+RMYWAKKILEWT PEEAL AIYLND+YE+DG DPNGYVGC+WSICG+H
Sbjct: 406 VQEGKMHGFLRMYWAKKILEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSICGIH 465
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
DQGWKER VFGKIRYMNY+GCKRKFDVD +
Sbjct: 466 DQGWKERDVFGKIRYMNYAGCKRKFDVDQF 495
>gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes]
gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes]
Length = 504
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/446 (52%), Positives = 311/446 (69%), Gaps = 16/446 (3%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF-DQFLGAKAR 77
++QGS G V+YWM RDQRV+DNWALI A A K ++P+ V F L + + R
Sbjct: 65 VRQGS-----GGVLYWMLRDQRVQDNWALIRAQQLAAKESLPLHVCFCLVVPKSELSTLR 119
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
F+L+GL +Q+ + I F L G A D +P FV +VTDFSPLRE +
Sbjct: 120 HYSFLLKGLEEVQKECKH-LNIQFHLLHGAAGDVLPGFVTGHNFGAVVTDFSPLREPLQW 178
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ + + + + +VDAHN+VP WVAS KLEYSA+T+RGKI LL E+L D+P++++
Sbjct: 179 LEAVKKGLPEDIPFIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLSEFLTDFPLVDKH 238
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
T T +++DWD +A+ L+ V E + G +A + +L + F+ RLK +
Sbjct: 239 PFSATKTAKAVDWDKTLAS-LKVDRTVGEPKLAKPGTEAGLAML----ESFIDVRLKLFG 293
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
T RN+P ALS LSP+L FGQ+SAQR AL+ RK ++ F+EEL+VRREL DN
Sbjct: 294 TQRNDP-NAAALSQLSPWLRFGQLSAQRVALQVRKN---SSPSVPAFIEELVVRRELTDN 349
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
FCFY NYDS+ GA+EWA+K+LKDHA DKRE++YT+EQFEKAQT D LWNA+Q++MV G
Sbjct: 350 FCFYNKNYDSVTGAYEWAQKTLKDHAKDKREYLYTREQFEKAQTHDKLWNAAQIQMVTEG 409
Query: 378 KMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
KMHGF+RMYWAKKILEW+T PEEAL+IA+YLND+YE+DG+DPNG+VGCMWSICG+HDQGW
Sbjct: 410 KMHGFLRMYWAKKILEWSTSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGW 469
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGY 463
ER VFGKIR+MNY GC RKF+V +
Sbjct: 470 AERAVFGKIRFMNYKGCLRKFNVAQF 495
>gi|385809101|ref|YP_005845497.1| Deoxyribodipyrimidine photolyase [Ignavibacterium album JCM 16511]
gi|383801149|gb|AFH48229.1| Deoxyribodipyrimidine photolyase [Ignavibacterium album JCM 16511]
Length = 447
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 240/454 (52%), Positives = 312/454 (68%), Gaps = 13/454 (2%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R+R+L++G ++ GP+VYWM RDQRV DNWALI + A + P+ V FNL
Sbjct: 2 VNGKRVRLLQKG--NETPGPIVYWMSRDQRVHDNWALIFSQQLALERQKPLIVLFNLVPN 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ GFML+GL ++ +++ ++I F L G E+ IP+ +++ AS+LV+DF P
Sbjct: 60 FLEATIRQYGFMLKGLEQMEVELKK-YKIPFVLSLGNPENEIPDLLKKINASVLVSDFDP 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ R K + ++S + +EVDAHN+VP S K+E+ A T+R KI+K LPE+L +
Sbjct: 119 LKIKRIWKRDVAKKIS--IPFYEVDAHNIVPCLYVSNKVEFGAYTIRSKIHKALPEFLDE 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P L + ++ +SIDW+ + L +V EI W + GE A VLK FL
Sbjct: 177 FPKL-KVMKNHELNSESIDWEKAEKS-LNINRDVKEIDWLKPGEANAQIVLKD----FLE 230
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
R NY DRN+P K ALS LSPYLHFGQISAQR AL + P A +FLEELIV
Sbjct: 231 NRFDNYAEDRNDPNK-NALSNLSPYLHFGQISAQRVALTVEQFYGNHPSA-KSFLEELIV 288
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL+DNFC++ P YDS +G +WA+K+L +H DKRE +Y+ E FE+A+T + LWNA+Q
Sbjct: 289 RRELSDNFCYFNPKYDSFEGFPDWAKKTLNEHRKDKREFVYSLEDFEQAKTHEDLWNAAQ 348
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+EMV GKMHG+MRMYWAKKILEW+ PE+AL IAIYLNDKYE+DGRDPNGYVGC WS+
Sbjct: 349 LEMVKTGKMHGYMRMYWAKKILEWSKSPEDALKIAIYLNDKYELDGRDPNGYVGCAWSVG 408
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
GVHD+ W ERPVFGKIRYMN +G KRKFDVD YI
Sbjct: 409 GVHDRAWTERPVFGKIRYMNLNGAKRKFDVDSYI 442
>gi|170035601|ref|XP_001845657.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
gi|167877630|gb|EDS41013.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
Length = 510
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/452 (50%), Positives = 301/452 (66%), Gaps = 8/452 (1%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RIR+L +++ + VVYWM RD RV+DNWA + A A KN +P+ V F+L +FL
Sbjct: 56 RIRILSDAKEVEEGKAGVVYWMSRDARVQDNWAFLFAQKLAMKNELPLHVCFSLVPKFLE 115
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FML+GL + + E + I F + G A+D +P FV+ +V DFSPLR
Sbjct: 116 ATIRHFKFMLKGLEEVAKECE-SLNIQFHMLTGMAKDTVPKFVKAHKMGAVVCDFSPLRV 174
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V + +VDAHNVVPVWV SEKLEY+A+T+R K+N L YL +P
Sbjct: 175 PAQWVEDVRKALPAEVPLCQVDAHNVVPVWVTSEKLEYAARTIRTKVNNNLNTYLTQFPP 234
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + K + IDW ++ L+ V E+ W G + L+G F+ KRL
Sbjct: 235 VVKHPHKSKLKAEPIDWPKLLD-TLQVDRTVDEVEWAVPGYTGGVATLQG----FVEKRL 289
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ + RN+P ALS LSP+ HFGQIS QR L +K K E + +F EE IVRRE
Sbjct: 290 RKFNAKRNDPTDD-ALSNLSPWFHFGQISVQRAILAVKKYGKGFSEGVASFCEEAIVRRE 348
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
L+DNFC+Y NYD+LKGA++WARK+L DH DKR H+YT++Q E+A+T D LWN++Q++M
Sbjct: 349 LSDNFCYYNKNYDNLKGAYDWARKTLDDHRKDKRTHVYTRDQLEQAKTHDDLWNSAQLQM 408
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V GKMHGF+RMYWAKKILEWT PEEAL AIYLND+Y++DGRDPNGYVGCMWSI G+H
Sbjct: 409 VKEGKMHGFLRMYWAKKILEWTKSPEEALETAIYLNDRYQLDGRDPNGYVGCMWSIAGIH 468
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
DQGW+ER VFGKIRYMNY GCKRKFDV ++A
Sbjct: 469 DQGWREREVFGKIRYMNYEGCKRKFDVAAFVA 500
>gi|348501075|ref|XP_003438096.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Oreochromis
niloticus]
Length = 511
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/446 (52%), Positives = 305/446 (68%), Gaps = 13/446 (2%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF-DQFLGAKAR 77
+KQGS V+YWM RDQRV+DNWALIHA A K N+P+ V F L + + R
Sbjct: 69 IKQGSEG-----VLYWMLRDQRVQDNWALIHAQRLAVKENLPLHVCFCLVVPKSELSTLR 123
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
FML+GL + + E+ I F L G +P FV +VTDFSP+RE +
Sbjct: 124 HYSFMLKGLEEVAKECEQ-LNIQFHLLHGAPGKVLPGFVSNRSFGAVVTDFSPIREPLQW 182
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ + ++ + +VDAHN+VP WVAS KLEYSA+T+RGKI LL E+L D+P+++
Sbjct: 183 LEDVKKKLPKDIPFIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLSEFLTDFPLVDAH 242
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
T T + +DWD +A+ L V E W + G M++L + F+ RLK +
Sbjct: 243 PHTATRTAKGVDWDKTLAS-LDVDRTVKEPEWAKPGTKPGMDML----ESFIDVRLKLFG 297
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+ RN+P P ALS LSP+L FGQISAQR A + ++ K ++I F+EEL+VRREL DN
Sbjct: 298 SQRNDPNAP-ALSQLSPWLRFGQISAQRVAWQVQRNGKNASQSIPAFIEELVVRRELTDN 356
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
FCFY YDS++GA+EWA+K+LKDHA D+R ++YT+EQ EKA+T D LWNA+Q +MV G
Sbjct: 357 FCFYNKKYDSVEGAYEWAQKTLKDHAKDERPYLYTREQLEKAKTHDKLWNAAQYQMVTEG 416
Query: 378 KMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
KMHGF+RMYWAKKILEWT+ PEEAL+IA+YLND+YE+DG+DPNG+VGCMWSICG+HDQGW
Sbjct: 417 KMHGFLRMYWAKKILEWTSSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGW 476
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGY 463
ER VFGKIRYMNY GC RKF+V +
Sbjct: 477 AERAVFGKIRYMNYKGCLRKFNVAQF 502
>gi|387017650|gb|AFJ50943.1| Deoxyribodipyrimidine photo-lyase-like [Crotalus adamanteus]
Length = 526
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/451 (50%), Positives = 308/451 (68%), Gaps = 10/451 (2%)
Query: 15 RIRVLKQGSLDKKRGP--VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+R++ D K G ++YWM R+QRV+DNWA ++A A K +P+ V F L +FL
Sbjct: 73 RVRLISPAP-DLKEGAQGILYWMSREQRVQDNWAFLYAQRLALKQRLPLHVCFCLVPKFL 131
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R GF+L+GL + I F L G A+D +P+FV + G +VTDFSPLR
Sbjct: 132 DATIRHFGFLLKGLEEVAEECR-MLDIPFHLLTGFAKDRVPHFVTQHGIGGVVTDFSPLR 190
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ + ++ V + +VDAHN+VP WVAS+K EY A+T+R KI L E+L ++P
Sbjct: 191 VPLQWVRDVQEQLPSDVPLAQVDAHNIVPCWVASDKQEYGARTIRRKIQDRLAEFLTEFP 250
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
L + + + I+W++ A+ L+ V E+ W G + ++VL +GF+ R
Sbjct: 251 PLVKHPFRAGLQAEPINWEACYAS-LQVDRSVKEVEWARPGSASGLKVL----EGFIKDR 305
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK + +DRNNP + ALS LSP+ HFGQ++ QR LE RK R E+++ F+EE +VRR
Sbjct: 306 LKFFASDRNNPNR-MALSNLSPWFHFGQVAVQRAILEVRKHRARYKESVEGFIEEAVVRR 364
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
ELADNFCFY PNYD ++GA++WA+ +LK HA DKR ++YT EQ E+ +T D LWNA+Q++
Sbjct: 365 ELADNFCFYNPNYDKIEGAYDWAKTTLKLHAKDKRPYLYTLEQLEEGKTHDLLWNAAQLQ 424
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV+ GKMHGF+RMYWAKKILEWT PEEAL +IYLND+YE+DGRDPNGYVGCMWSICG+
Sbjct: 425 MVHEGKMHGFLRMYWAKKILEWTRSPEEALQFSIYLNDRYELDGRDPNGYVGCMWSICGI 484
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
HDQGW ER VFGKIRYMNY+GCKRKFDV +
Sbjct: 485 HDQGWAERAVFGKIRYMNYAGCKRKFDVAQF 515
>gi|405960251|gb|EKC26192.1| Deoxyribodipyrimidine photo-lyase [Crassostrea gigas]
Length = 515
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/451 (51%), Positives = 306/451 (67%), Gaps = 10/451 (2%)
Query: 15 RIRVLK--QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
RI+VL Q D K G VVYWM RDQRV+DNWA+++A A K VP+ V F L +FL
Sbjct: 63 RIKVLSKVQDFPDGKNG-VVYWMSRDQRVQDNWAMLYAQRLALKMEVPLHVCFCLVPKFL 121
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R F+L+GL +++ +E I F L G A+D +P+FV++ ++TDFSPLR
Sbjct: 122 DATIRHYRFILKGLEEVEKECQE-LGISFHLLIGHAKDVLPSFVKDHQIGGVITDFSPLR 180
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ + + + +VDAHNVVP W AS KLEY A+T+R KI+ L +YL ++P
Sbjct: 181 VPAEWVSAVSKALPSDIPLCQVDAHNVVPCWEASPKLEYGARTIRNKIHNQLSQYLTEFP 240
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ + K Q +DW S L +V E+ W G A + +L + F +R
Sbjct: 241 PVSKHPHKPKAASQPVDW-SKAEDSLEVDRKVTEVDWAVPGSTAGLNML----ESFCHER 295
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK + +DRNNP K ALS LSP++ FGQIS QRC L R+ R E++++++EE I+RR
Sbjct: 296 LKYFGSDRNNPNK-NALSNLSPWIKFGQISVQRCILTVRQYRSKYKESVESYIEEAIIRR 354
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
EL+DNFCFY NYDS+ GA++WA+++LK HA D+R+++YTKEQ E A+T D LWNA+Q +
Sbjct: 355 ELSDNFCFYNKNYDSIDGAYDWAKQTLKVHADDERKYVYTKEQLEFAKTHDDLWNAAQKQ 414
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV GKMHGF+RMYWAKKILEWT P+ AL AIYLNDKY +DGRDPNGYVGCMWSICG+
Sbjct: 415 MVLEGKMHGFLRMYWAKKILEWTPSPKVALETAIYLNDKYSLDGRDPNGYVGCMWSICGI 474
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
HDQGWKER +FGKIRYMNY+GCKRKFDV +
Sbjct: 475 HDQGWKERDIFGKIRYMNYAGCKRKFDVAAF 505
>gi|224060613|ref|XP_002190613.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Taeniopygia
guttata]
Length = 697
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/423 (53%), Positives = 296/423 (69%), Gaps = 7/423 (1%)
Query: 41 VRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL 100
V DNWA ++A A K +P+ V F L +FLGA R FMLRGL+ + E I
Sbjct: 272 VADNWAFLYAQRLALKQELPLHVCFCLVPKFLGATIRHYRFMLRGLQEVAEECAE-LNIP 330
Query: 101 FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVV 160
F L G A+D +P FV E G LVTDFSPLR R+ + + R+ + V +VDAHN+V
Sbjct: 331 FHLLLGYAKDVLPTFVVEHGVGGLVTDFSPLRLPRQWVEDVKERLPEDVPFAQVDAHNIV 390
Query: 161 PVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRK 220
P WVAS K EYSA+T+RGKI+ LPE+L ++P + + + I W++ ++ L+
Sbjct: 391 PCWVASPKQEYSARTIRGKIHAQLPEFLTEFPPVVPHPHLPSCPAEPIAWEACYSS-LQV 449
Query: 221 GAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQ 280
V E+ W G A M VLK F+ +RLK++ T RN+P K ALS LSP+LHFGQ
Sbjct: 450 DHTVKEVEWATPGTAAGMAVLKS----FIAERLKSFSTHRNDPNK-AALSNLSPWLHFGQ 504
Query: 281 ISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLK 340
+S QR LE +K R+ +++D F+EE +VRRELA+NFC+Y NYDS++GA++WA+ +LK
Sbjct: 505 VSTQRAILEVQKQRRNYKDSVDAFVEEAVVRRELAENFCYYNENYDSVQGAYDWAQTTLK 564
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEE 400
HA DKR ++Y+ ++ E+ T DPLWNA+Q++MV GKMHGF+RMYWAKKILEWT PEE
Sbjct: 565 LHAKDKRPYLYSLQELEQGTTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKILEWTRSPEE 624
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 460
AL AIYLND+YE+DGRDPNGYVGC+WSICG+HDQGW ERP+FGKIRYMNY+GCKRKFDV
Sbjct: 625 ALQFAIYLNDRYELDGRDPNGYVGCLWSICGIHDQGWAERPIFGKIRYMNYAGCKRKFDV 684
Query: 461 DGY 463
D +
Sbjct: 685 DQF 687
>gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
str. Fusaro]
gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
str. Fusaro]
Length = 462
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/467 (51%), Positives = 311/467 (66%), Gaps = 24/467 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR + G K GPV YWM RDQRV DNWAL+ A A + +VPV V F L D+
Sbjct: 1 MNPKRIRTILSGKPGK--GPVAYWMSRDQRVEDNWALLFARKIALEADVPVFVVFCLVDK 58
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FLGA RQ FML+GL+ ++ + +I FF QG+ E+ IP+F+ + G L+TDFSP
Sbjct: 59 FLGAIRRQYEFMLKGLQEVEATLARK-KIPFFFLQGDPEEKIPDFIEKYGIGTLITDFSP 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R +K+ + + V EVDAHNVVP W AS+K EY+A T R K+ +LLPE+L +
Sbjct: 118 LRIKRTWTEKVASSIK--VPFFEVDAHNVVPCWEASKKQEYAAHTFRPKLLRLLPEFLTE 175
Query: 191 YPMLEQPIE------------KWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCESGEDAA 237
YP LE +E +++ ++S + L K A +P++ E+GE AA
Sbjct: 176 YPELETNLEFPEIAVRSGKAERFSEVQKSGIGTRLPGEFLEKKAGFLPDLALFEAGETAA 235
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
+V+ D FLT +L +Y + RN+P K ALS LSPYLHFGQISAQR AL+ KA K
Sbjct: 236 RKVM----DEFLTNKLDSYSSLRNDPTKD-ALSNLSPYLHFGQISAQRVALKVEKA-KAD 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
E+ FL+EL+VR+ELADNFC+Y P YDS G +WA+K+L H D+R HI+T E+ E
Sbjct: 290 LESKRVFLDELLVRKELADNFCYYNPFYDSFDGFPDWAKKTLNSHRRDQRSHIFTLEELE 349
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGR 417
+T DPLWNASQ+E++ GKMH +MRMYWAKKILEW+ PE+AL AIYLNDKYE+DGR
Sbjct: 350 TGRTYDPLWNASQIELIRKGKMHSYMRMYWAKKILEWSESPEKALETAIYLNDKYELDGR 409
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
DPNGY G WSI GVHD+ W+ER +FGKIRYM+Y G KRKFDV YI
Sbjct: 410 DPNGYAGIAWSIGGVHDRAWQEREIFGKIRYMSYEGSKRKFDVKSYI 456
>gi|464378|sp|P34205.1|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus]
Length = 556
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+KQGS +YWM RDQRV+DNWALI+A A +P+ + F L ++L A RQ
Sbjct: 103 IKQGS-----DGFLYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDATYRQ 157
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCK 138
FML+GL+ + + + + I F L GE N+P+FV + +VTDF+PLR +
Sbjct: 158 YAFMLKGLQEVAKECK-SLDIQFHLLSGEPGQNLPSFVEKWKFGAVVTDFNPLRIPLQWI 216
Query: 139 DKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI 198
+ + + V +VDAHNVVP W AS KLEY A+T+RGKI KLLPE+L + P+++
Sbjct: 217 ETVKKHLPADVPFIQVDAHNVVPCWEASGKLEYGARTIRGKITKLLPEFLTEIPLVDTHP 276
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + +DW+ ++++ L V E+ W + G M +L + F+ +RL+ + T
Sbjct: 277 HSASRAAEPVDWEEVLSS-LEVERSVGEVDWAQPGTSGGMNML----ESFIDQRLRLFAT 331
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
RNNP ALS LSP++H GQ+SAQR + ++ + E++ +F+EEL+VRRELADNF
Sbjct: 332 HRNNP-NYDALSHLSPWIHTGQLSAQRVVKQVKREKN-ASESVASFIEELVVRRELADNF 389
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
CFY P+YD++ GA++WA+K+L+DHA D R+++YTKEQ E A+T D LWNA+Q ++V GK
Sbjct: 390 CFYNPSYDNISGAYDWAKKTLQDHAKDSRQYLYTKEQLENAKTHDQLWNAAQRQLVSEGK 449
Query: 379 MHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK 438
MHGF+RMYWAKKILEWT PEEAL+IAIYLND+ +DG DPNGYVGCMWSICG+HDQGW
Sbjct: 450 MHGFLRMYWAKKILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIHDQGWA 509
Query: 439 ERPVFGKIRYMNYSGCKRKFDV 460
ERP+FGKIR+MNY+GCKRKFDV
Sbjct: 510 ERPIFGKIRFMNYAGCKRKFDV 531
>gi|397690418|ref|YP_006527672.1| deoxyribodipyrimidine photolyase [Melioribacter roseus P3M]
gi|395811910|gb|AFN74659.1| deoxyribodipyrimidine photolyase [Melioribacter roseus P3M]
Length = 445
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/458 (51%), Positives = 313/458 (68%), Gaps = 17/458 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P R+R LK L K G V+YWM RDQRV DNWAL+ A +A + +P+ V FNL +
Sbjct: 2 VLPKRVRKLKDAEL--KNGAVIYWMQRDQRVYDNWALLFAYHRAKERQLPLIVIFNLVPE 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FLGA RQ FM+ GL+ +++ + + I F L G IP FV+E G S L+TDF+P
Sbjct: 60 FLGASLRQYSFMINGLKQVEKKLSK-LNIGFKLLSGNPAVTIPAFVKESGCSELITDFNP 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R+ K ++ +++ + ++VDAHN+VP ++AS K E++A T R KI KLLPE++ D
Sbjct: 119 LRITRKWKKEVHSKIK--IPFYDVDAHNIVPCFLASGKQEFAAYTFRPKIQKLLPEFMDD 176
Query: 191 YPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P L++ P+ ++T + DW+++ ++ A V EI W GE+AA E+L D F+
Sbjct: 177 FPPLKKMPVNEFTNIKN--DWENL---KIKTDASVQEIDWILPGEEAAFEIL----DSFI 227
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+L+ Y +N+P ALS LS +LHFG ISAQR ALE + R ++ ++FLEELI
Sbjct: 228 ESKLEFYSDKKNDP-NENALSNLSIHLHFGHISAQRIALEILR-RTEHSKSRESFLEELI 285
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VR+EL+DNFC+Y YDS +G EWA+K+L +H DKRE++Y+ E+ E+ +T D LWNA+
Sbjct: 286 VRKELSDNFCYYNKKYDSFEGFPEWAQKTLNEHRRDKREYVYSLEELEEGKTHDSLWNAA 345
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q EM GKMHG++RMYWAKKILEWT PEEAL AIYLNDK+E+DGRDPNGY G WSI
Sbjct: 346 QFEMKTKGKMHGYLRMYWAKKILEWTNSPEEALKYAIYLNDKHELDGRDPNGYTGIAWSI 405
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
GVHD+ W ERPVFGKIRYMNY+GCKRKFDV Y V
Sbjct: 406 GGVHDRAWSERPVFGKIRYMNYAGCKRKFDVSKYTINV 443
>gi|410924750|ref|XP_003975844.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Takifugu
rubripes]
Length = 538
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/443 (51%), Positives = 301/443 (67%), Gaps = 13/443 (2%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-FDQFLGAKAR 77
+KQGS V+YWM RD RV+DNWALIHA A K +P+ V L + + R
Sbjct: 95 IKQGSQG-----VLYWMLRDHRVQDNWALIHAQQLAVKEKLPLHVCVCLHVPKSELSTLR 149
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
FML+GL +++ + + F L G + +P FV E +VTDFSPLRE +
Sbjct: 150 HYSFMLKGLEEVEKECK-ALDVQFHLLHGSVGEVLPGFVSERHLGAVVTDFSPLREPLKW 208
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
D + + + +VDAHN+VP WVAS KLEY+A+T+RGKINK L E+L D+P +E+
Sbjct: 209 LDDLKKEFPQDIPLIQVDAHNIVPCWVASPKLEYAARTIRGKINKHLSEFLTDFPPIEKH 268
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+ +DW+ +++ L V E W + G A + +L + F+ +RLK +
Sbjct: 269 PHTAEQAAEPVDWEETLSS-LSIDRTVGETEWAKPGAGAGLAML----ESFIDERLKLFD 323
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+ RN+P ALS +SP++ FG +SAQR AL+ +++ K A+ +F+EEL+VRREL DN
Sbjct: 324 SQRNDP-NAAALSQMSPWIRFGHVSAQRVALQVQRSGKKAGVAVSSFIEELVVRRELTDN 382
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
FCFY NYDS++GA EWARK+LKDHA DKR +IYT+ Q E+AQT D LWNA+Q +MV G
Sbjct: 383 FCFYNENYDSVEGAHEWARKTLKDHAKDKRPYIYTRRQLEEAQTHDHLWNAAQYQMVTEG 442
Query: 378 KMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
KMHGF+RMYWAKKILEWT+ PEEAL+ ++YLND++E+DG+DPNG+VGCMWSICGVHDQGW
Sbjct: 443 KMHGFLRMYWAKKILEWTSSPEEALSTSLYLNDRFELDGQDPNGFVGCMWSICGVHDQGW 502
Query: 438 KERPVFGKIRYMNYSGCKRKFDV 460
ERPVFGKIRYMNY GC RKFDV
Sbjct: 503 AERPVFGKIRYMNYKGCLRKFDV 525
>gi|118175518|gb|ABK76277.1| CPD photolyase [Dunaliella salina]
Length = 529
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/475 (49%), Positives = 298/475 (62%), Gaps = 35/475 (7%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKN--------------------------NVPVAV 63
PVVYWM RD RV DNWAL+ +A + P+ V
Sbjct: 51 PVVYWMSRDMRVSDNWALLQGCQEALQRLQLASHADTAAAAAAATAAHSSPALAQPPLVV 110
Query: 64 AFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123
AFNL QFLGA AR FML+GLR L+ + + F I F+L +G+ ED IP V A L
Sbjct: 111 AFNLVPQFLGAGARSFCFMLKGLRELETKLRQ-FNIPFYLLRGQPEDTIPQLVDALRAGL 169
Query: 124 LVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK 182
+V+D+SPLR ++ K ++ ++ + V VDAHNVVP +AS K EY+A+T+R KI K
Sbjct: 170 VVSDYSPLRLSKQWKQQVAAKLQAKGVGFQVVDAHNVVPAKIASNKREYAARTIRPKIEK 229
Query: 183 LLPEYLIDYPMLEQPIEKWTGTR-----QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
LLPE+LI++P P T + IDW +++A V GA VPE+ W GE AA
Sbjct: 230 LLPEFLIEFPNQGLPPIMPTAGQGPHPPTPIDWPALLAEVTEAGAAVPEVDWITPGEAAA 289
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
L GS+ T R+ Y RN+P LS LSPYLHFGQ+SAQR ALEA K R
Sbjct: 290 RAALDGSQGFLTTPRIAQYHVKRNDPSCTTGLSNLSPYLHFGQLSAQRAALEASKLRSRH 349
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSL--KGAWEWARKSLKDHASDKREHIYTKEQ 355
EA+D +LEELIVRRELADNFC + P+YD L A++WA KSL+ H D R YT++Q
Sbjct: 350 REAVDRYLEELIVRRELADNFCEHCPDYDKLVPGTAYDWALKSLEKHKRDPRPITYTRQQ 409
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEID 415
E T D LWNA QME+V GKMHG++RMYWAKKILEW+ PEEA+ AIYLNDK+ +D
Sbjct: 410 LESGHTGDDLWNAGQMELVRQGKMHGYIRMYWAKKILEWSGTPEEAVENAIYLNDKWSLD 469
Query: 416 GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
GRDP+GY G MWS+ GVHD+ W +RP++GKIR M Y GCK KFDV Y+AYV+ +
Sbjct: 470 GRDPSGYTGVMWSVAGVHDRAWIDRPIYGKIRVMTYDGCKGKFDVPAYVAYVESL 524
>gi|157123882|ref|XP_001653955.1| DNA photolyase [Aedes aegypti]
gi|108882857|gb|EAT47082.1| AAEL001787-PA [Aedes aegypti]
Length = 506
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/452 (49%), Positives = 300/452 (66%), Gaps = 8/452 (1%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R+L +++ + V+YWM RD RV+DNWA + A A KN +P+ V F+L +FL
Sbjct: 53 RVRILSDAKEVEENKKGVIYWMSRDARVQDNWAFLFAQKLALKNELPLHVCFSLVPKFLD 112
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FML+GL + + E + I F + G A+D IP FV+ +V DFSPLR
Sbjct: 113 ATIRHYKFMLKGLEEVAKECE-SLNINFHMLTGMAKDTIPKFVKTHNIGAVVCDFSPLRV 171
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V + +VDAHN+VP+WV SEK EY+A+T+R K+N L YL +P
Sbjct: 172 PMKWVEDVRKSLPAEVPLCQVDAHNIVPLWVTSEKQEYAARTIRNKVNNNLNTYLTQFPP 231
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + K + SIDW ++ + V E+ W G + VL+ F+ KRL
Sbjct: 232 VIKHPHKASFKADSIDWVKLLDTI-EVDRTVDEVDWAVPGYTGGIGVLQS----FVEKRL 286
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ + RN+P ALS LSP+ HFGQIS QRC L +K K E + F EE IVRRE
Sbjct: 287 RKFNAKRNDPTDD-ALSNLSPWFHFGQISVQRCVLAVKKYGKGYSEGVAAFCEESIVRRE 345
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
L+DNFC+Y NYD+LKGA++WA+K+L DH DKR ++Y+++Q E+A+T D LWN++Q++M
Sbjct: 346 LSDNFCYYNKNYDNLKGAYDWAQKTLDDHRKDKRTYVYSRDQLEQARTHDDLWNSAQIQM 405
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V GKMHGF+RMYWAKKILEWT PEEAL AIYLND+Y++DGRDPNGYVGCMWSI G+H
Sbjct: 406 VKEGKMHGFLRMYWAKKILEWTKTPEEALETAIYLNDRYQLDGRDPNGYVGCMWSIAGIH 465
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
DQGW+ER VFGKIRYMNY GCKRKFDV ++A
Sbjct: 466 DQGWREREVFGKIRYMNYEGCKRKFDVAAFVA 497
>gi|41055064|ref|NP_957358.1| uncharacterized protein LOC394039 [Danio rerio]
gi|32451837|gb|AAH54710.1| Zgc:66475 [Danio rerio]
Length = 516
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/433 (49%), Positives = 302/433 (69%), Gaps = 8/433 (1%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM RDQR++DNWALI++ A +P+ + F L +FL A RQ FML+GL+ +
Sbjct: 73 VLYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLDATYRQYAFMLKGLQEVV 132
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ + + I F L GE N+P FV+ +VTDF+PLR + D + + +
Sbjct: 133 KECK-SLDIEFHLLSGEPVHNLPAFVKSWNIGAVVTDFNPLRISLQWIDTVKKHLPSDIP 191
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+VDAHNVVP W AS KLEY A+T+RGKI K L E+L D P+++ + + IDW
Sbjct: 192 FIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPLVDTHPYCASRAAKIIDW 251
Query: 211 DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
+ ++++ L V E+ W + G M +L + F+ +RL + T RNNP A+S
Sbjct: 252 EEVLSS-LEVDHNVCEVEWAQPGTTGGMFML----ESFIDQRLHIFATHRNNP-NSDAVS 305
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
LSP++H GQ+SAQR ++ ++ +K E++ +F+EE++VRRELADNFCFY NYD++ G
Sbjct: 306 HLSPWIHAGQLSAQRVVMQVKR-KKNASESVASFIEEIVVRRELADNFCFYNQNYDNISG 364
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390
A++WA+K+L++HA D+R+++YTK++ E A+T D LWNA+Q +++ GKMHGF+RMYWAKK
Sbjct: 365 AYDWAKKTLQEHAKDRRQYLYTKKELESAETHDQLWNAAQRQLLLEGKMHGFLRMYWAKK 424
Query: 391 ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMN 450
ILEWT PEEAL+IAIYLND+ +DG DPNGYVGCMWSICG+HDQGW ERP+FGKIRYMN
Sbjct: 425 ILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIHDQGWAERPIFGKIRYMN 484
Query: 451 YSGCKRKFDVDGY 463
Y+GCKRKFDV+ +
Sbjct: 485 YAGCKRKFDVEQF 497
>gi|357613630|gb|EHJ68626.1| DNA photolyase [Danaus plexippus]
Length = 487
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/454 (51%), Positives = 304/454 (66%), Gaps = 10/454 (2%)
Query: 14 GRIRVLKQGSL--DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
R+R++ Q + D G +VYWM RD RV+DNWA ++A + A KN VP+ V F L ++
Sbjct: 23 SRLRIISQEQMVSDDCEG-IVYWMSRDSRVQDNWAFLYAQELALKNKVPLHVCFCLIAKY 81
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
L A RQ F+++GL + + ++ I F L +G + +P +V + +V DF+PL
Sbjct: 82 LDASVRQFHFLIKGLEKVAADCDK-LNISFHLLEGNGAEVLPQWVIDHRIGAVVCDFNPL 140
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + ++ V + +VDAHNVVP WVAS K EYSA+T+R KIN L EYL ++
Sbjct: 141 RVPLGWVEGAKKKLKKDVPLIQVDAHNVVPCWVASNKQEYSARTIRNKINSKLDEYLTEF 200
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P + + + + IDWD I V IGW G D A++ LK FL K
Sbjct: 201 PPVIKHPHSSSFKPEPIDWDKAIE-TREADKSVGPIGWAGPGYDNAVKTLKS----FLDK 255
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RLK + T RN+P + ALS LSP+ HFGQISAQR AL ++ + E+++++LEE IVR
Sbjct: 256 RLKVFATKRNDPTQD-ALSNLSPWFHFGQISAQRVALCVKEYKTKYTESVNSYLEEAIVR 314
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFCFY +YDS+KGA +WA+K+L DH +DKR HIYT EQF KA+T D LWN++Q+
Sbjct: 315 RELADNFCFYCEHYDSIKGASQWAQKTLDDHRNDKRTHIYTLEQFCKAETHDDLWNSAQI 374
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
+MV GKMHGF+RMYW KKILEWT+ PEEAL AIYLND Y +DGRDP+GYVGCMWSICG
Sbjct: 375 QMVKEGKMHGFLRMYWCKKILEWTSSPEEALKYAIYLNDHYSVDGRDPSGYVGCMWSICG 434
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
VHDQGW ER VFGKIR+MNY GCKRKF+V ++
Sbjct: 435 VHDQGWAERAVFGKIRFMNYDGCKRKFNVPAFVC 468
>gi|47227913|emb|CAF97542.1| unnamed protein product [Tetraodon nigroviridis]
Length = 508
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/434 (52%), Positives = 296/434 (68%), Gaps = 10/434 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-FDQFLGAKARQLGFMLRGLRLL 89
V+YWM RD RV+DNWALIHA A + VP+ V L + + R F+L+GL +
Sbjct: 74 VLYWMLRDHRVQDNWALIHARRLALEEKVPLHVCVCLHVPKSQLSTLRHYSFLLKGLEEV 133
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
+ I F L +G A D +P FV E +VTDFSPLRE + + ++ V
Sbjct: 134 AAECK-ALGIQFHLLRGPAGDLLPGFVSEQQLGAVVTDFSPLREPLTWLEDVKKKLPKDV 192
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID 209
+ +VDAHN+VP WVAS KLEY+A+T+RGKI K LPE+L D+P++E+ T T + +D
Sbjct: 193 PLIQVDAHNIVPCWVASPKLEYAARTIRGKITKQLPEFLTDFPLVEKHPHAATRTAKPVD 252
Query: 210 WDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
W ++++ L V E W G A + +L + F+ RLK + + RN+P AL
Sbjct: 253 WRELLSS-LGVDRTVGETEWARPGAAAGLAML----ESFIDVRLKRFDSQRNDP-NAAAL 306
Query: 270 SGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLK 329
S LSP++ FG +SAQR AL+ ++ + + +F+EEL+VRREL DNFCFY YDS++
Sbjct: 307 SQLSPWIRFGHVSAQRVALQVQRGGRKLGVGVSSFIEELVVRRELTDNFCFYNEKYDSVE 366
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK 389
GA+EWARK+LKDHA DKR +IYT+EQ EKA+T D LWNA+Q+ V GKMHGF+RMYWAK
Sbjct: 367 GAYEWARKTLKDHAKDKRPYIYTREQLEKAETHDKLWNAAQV--VREGKMHGFLRMYWAK 424
Query: 390 KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYM 449
KILEWT PEEALA A+YLND+YE+DG+DPNG+VGCMWSICG+HDQGW ERPVFGKIRYM
Sbjct: 425 KILEWTPSPEEALASALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERPVFGKIRYM 484
Query: 450 NYSGCKRKFDVDGY 463
NY GC RKFDV +
Sbjct: 485 NYKGCLRKFDVAAF 498
>gi|74136505|ref|NP_001028149.1| DNA photolyase [Monodelphis domestica]
gi|682750|dbj|BAA06700.1| photolyase [Monodelphis domestica]
Length = 470
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 297/447 (66%), Gaps = 8/447 (1%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ Q L VYWM RDQRV+DNWA ++A A K +P+ V F L FLG
Sbjct: 20 RVRLISQDCHLQDHSQAFVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLG 79
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FMLRGL + E+ I F L G +D +P FV+ +VTDFSPL
Sbjct: 80 ATIRHYDFMLRGLEEVAEECEK-LHIPFHLLLGLPKDVLPAFVQAHSIGGIVTDFSPLLH 138
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V +VDAHN+VP W+AS+K EY A+T+R KI+ LP +L ++P
Sbjct: 139 HTQWVKDVQDGLPKQVPFVQVDAHNIVPCWIASDKQEYGARTIRHKIHDRLPHFLTEFPP 198
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + +DW++ A L+ V E+ W + G + + +L+ F+++RL
Sbjct: 199 VICHPYPSNIQAEPVDWNACRAG-LQVDRSVKEVSWAKPGTASGLTMLQS----FISQRL 253
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ +DRNNP K ALS LSP+ HFGQ+S QR LE +K R P+++ F+EE +VRRE
Sbjct: 254 PYFGSDRNNPNK-DALSNLSPWFHFGQVSVQRAILEVQKHRSRYPDSVANFVEEAVVRRE 312
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
LADNFCFY NYD L+GA++WA+ +L+ HA DKR H+Y+ EQ E +T DPLWNA+QM+M
Sbjct: 313 LADNFCFYNKNYDKLEGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQM 372
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V GKMHGF+RMYWAKKILEWT PEEAL AIYLND++++DGRDPNGYVGCMWSICG+H
Sbjct: 373 VQEGKMHGFLRMYWAKKILEWTRSPEEALEFAIYLNDRFQLDGRDPNGYVGCMWSICGIH 432
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDV 460
DQGW ER +FGKIRYMNY+GCKRKFDV
Sbjct: 433 DQGWAEREIFGKIRYMNYAGCKRKFDV 459
>gi|312373837|gb|EFR21518.1| hypothetical protein AND_16935 [Anopheles darlingi]
Length = 529
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/465 (49%), Positives = 304/465 (65%), Gaps = 11/465 (2%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+RVL +++ + V+YWM RD RV+DNWA + A A KN +P+ V FNL +FL
Sbjct: 75 RVRVLSDAKVIEEGKEGVLYWMSRDVRVQDNWAFLFAQKLALKNELPLHVCFNLVPRFLD 134
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FML GL + + E+ I F L +G A N+P FV++ +V DFSPLR
Sbjct: 135 ATIRHFKFMLNGLEEVAKECEK-LNIHFHLLRGNAGQNVPAFVKKHRIGGVVCDFSPLRV 193
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V + +VDAHN+VPVWV SEKLEY+A+T+R K+N L +L +P
Sbjct: 194 PMQWVEDVRKALPMEVPLCQVDAHNIVPVWVTSEKLEYAARTIRNKVNNNLGTFLTPFPP 253
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + K + + IDW +I + L V E+ W G + L+ F+ KRL
Sbjct: 254 VIKHPHKASFQAEPIDWPQVIDS-LEVDRTVDEVKWATPGYTGGVATLQS----FVEKRL 308
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ RN+P + ALS LSP+ HFGQI+ QR L + K E++ +F EE IVRRE
Sbjct: 309 GKFNAKRNDPTE-NALSNLSPWFHFGQIAVQRAVLAVKSHGKRHTESVASFCEEAIVRRE 367
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
LADNFCFY NYD+LKGA++WARK+L DH D+R + YT+E+ E A+T D LWN++Q++M
Sbjct: 368 LADNFCFYNKNYDNLKGAYDWARKTLDDHRKDRRVYCYTREELETAKTHDDLWNSAQLQM 427
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V GKMHGF+RMYWAKKILEWT PEEAL AIYLND++ +DGRDPNGYVGCMWSI G+H
Sbjct: 428 VKEGKMHGFLRMYWAKKILEWTKSPEEALETAIYLNDRFNLDGRDPNGYVGCMWSIAGIH 487
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
DQGWKER +FGKIRYMNY GCKRKFDV+ A+V R G +R+
Sbjct: 488 DQGWKEREIFGKIRYMNYEGCKRKFDVN---AFVVRYGGKVYRRK 529
>gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
pisum]
Length = 506
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/455 (49%), Positives = 303/455 (66%), Gaps = 14/455 (3%)
Query: 15 RIRVL-KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+RVL +Q + + V+YW FRD+R+ DNWAL++A A KN V + + F QFL
Sbjct: 50 RVRVLSEQKEVPEWAEGVIYWTFRDERIHDNWALLYAQKLAIKNKVSLHITFCRLKQFLD 109
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
R + +GL L+ + + I F G A D +P+FV++ ++ DF P+RE
Sbjct: 110 CSLRHYKHIFQGLEELETECK-SLDIQFHFLIGCAADILPDFVKKHKLGAIIVDFMPVRE 168
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
++ +R+ V + +VDAHN+VP WVAS+K EYSA+T+R KIN LPE+L ++P
Sbjct: 169 HISWTKQLADRIGSEVPVIQVDAHNIVPCWVASDKQEYSARTIRNKINNKLPEFLTEFPP 228
Query: 193 MLEQPIEKWTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+++ P T + +WD V R VP + ++G A M L + FL
Sbjct: 229 VIKHPFRS-TFKAKPTNWDEADKTLEVDRSVVSVPGL---KAGFKAGMSEL----EQFLK 280
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
KRL Y TDRNNP+K LS LSP+LHFGQISAQRC LE K K P+++ + EE IV
Sbjct: 281 KRLPKYSTDRNNPVKD-GLSKLSPWLHFGQISAQRCILEVSKLSKQYPDSVAAYREEAIV 339
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL+DNFCFY P YD ++GA WA+ SL +H DKR +YT+E+ E ++T D LWN++Q
Sbjct: 340 RRELSDNFCFYNPKYDKIEGAPNWAQTSLNEHRKDKRMFVYTREELESSRTHDDLWNSAQ 399
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+++V GKMHGF+RMYWAKKILEWT P+ ALA AIYLNDKY +DGRDP+G+VGCMWSIC
Sbjct: 400 IQLVKEGKMHGFLRMYWAKKILEWTDTPDRALADAIYLNDKYSMDGRDPSGFVGCMWSIC 459
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G+HDQGWKER +FGKIRYMNY+GCKRKFD++ +IA
Sbjct: 460 GIHDQGWKEREIFGKIRYMNYAGCKRKFDINAFIA 494
>gi|8134633|sp|Q28811.1|PHR_POTTR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1401039|dbj|BAA05041.1| photolyase [Potorous tridactylus]
Length = 532
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/451 (50%), Positives = 299/451 (66%), Gaps = 16/451 (3%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ Q L + VYWM RDQRV+DNWA ++A A K +P+ V F L FLG
Sbjct: 82 RVRLISQDCHLQDQSQAFVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLG 141
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FMLRGL + E+ I F L G +D +P FV+ G +VTDFSPL
Sbjct: 142 ATIRHYDFMLRGLEEVAEECEK-LCIPFHLLLGLPKDVLPAFVQTHGIGGIVTDFSPLLH 200
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V +VDAHN+VP WVAS+K EY A+T+R KI+ LP +L ++P
Sbjct: 201 HTQWVKDVQDALPRQVPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFP- 259
Query: 194 LEQPI--EKWTGTRQS--IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
P+ +T Q+ +DW+ A L+ V E+ W + G + + +L+ F+
Sbjct: 260 ---PVICHPYTSNVQAEPVDWNGCRAG-LQVDRSVKEVSWAKPGTASGLTMLQS----FI 311
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+RL + +DRNNP K ALS LSP+ HFGQ+S QR LE +K R P+++ F+EE +
Sbjct: 312 AERLPYFGSDRNNPNKD-ALSNLSPWFHFGQVSVQRAILEVQKHRSRYPDSVTNFVEEAV 370
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRRELADNFCFY NYD L+GA++WA+ +L+ HA DKR H+Y+ EQ E +T DPLWNA+
Sbjct: 371 VRRELADNFCFYNKNYDKLEGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAA 430
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
QM+ V GKMHGF+RMYWAKKILEWT PEEAL AIYLND++++DG DPNGYVGCMWSI
Sbjct: 431 QMQTVKEGKMHGFLRMYWAKKILEWTRSPEEALEFAIYLNDRFQLDGWDPNGYVGCMWSI 490
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 460
CG+HDQGW ER +FGKIRYMNY+GCKRKFDV
Sbjct: 491 CGIHDQGWAEREIFGKIRYMNYAGCKRKFDV 521
>gi|395519161|ref|XP_003763719.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Sarcophilus
harrisii]
Length = 533
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 296/447 (66%), Gaps = 8/447 (1%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ Q L VYWM RDQRV+DNWA ++A A K +P+ V F L FLG
Sbjct: 83 RVRLISQDCHLQDHSQAFVYWMARDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLG 142
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FMLRGL + E+ I F L G +D +P FV++ +VTDFSPL
Sbjct: 143 ATLRHYDFMLRGLEEVAEECEK-LCIPFHLLLGLPKDVLPPFVQKHSIGGIVTDFSPLVH 201
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V +VDAHN+VP WVAS+K EY A+T+R KI+ LP +L ++P
Sbjct: 202 HTQWVKDVQDALPRQVPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPP 261
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + + +DW++ A L+ V E+ W + G + +L+ F+ +RL
Sbjct: 262 IICHPYPSSIQAEPVDWNACRAG-LQVDRSVKEVSWAKPGTAFGLTMLQS----FIAERL 316
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ +DRNNP K LS LSP+ HFGQ+S QR LE +K R P+++ F+EE +VRRE
Sbjct: 317 PYFGSDRNNPNK-DVLSNLSPWFHFGQVSVQRAILEVQKHRGRYPDSVANFVEEAVVRRE 375
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
LADNFCFY NYD L+GA++WA+ +L+ HA DKR H+Y+ EQ E +T DPLWNA+QM+M
Sbjct: 376 LADNFCFYNKNYDKLEGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQM 435
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V GKMHGF+RMYWAKKILEWT PEEAL AIYLND++++DGRDPNGYVGCMWSICG+H
Sbjct: 436 VKEGKMHGFLRMYWAKKILEWTHSPEEALEFAIYLNDRFQLDGRDPNGYVGCMWSICGIH 495
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDV 460
DQGW ER +FGKIRYMNY+GCKRKFDV
Sbjct: 496 DQGWAEREIFGKIRYMNYAGCKRKFDV 522
>gi|320169667|gb|EFW46566.1| deoxyribodipyrimidine photo-lyase [Capsaspora owczarzaki ATCC
30864]
Length = 634
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/473 (48%), Positives = 299/473 (63%), Gaps = 47/473 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM RDQRV+DNWALI+A A ++ VP+ V F L FL A RQ FM+ GLR ++
Sbjct: 130 VLYWMSRDQRVQDNWALIYAQQLAIQHRVPLFVGFCLVPHFLDATIRQYDFMMEGLREVE 189
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS-- 148
+ I F LF G A +++P FV +VTDFSP+R I+R ++ N ++ +
Sbjct: 190 TALR-GLNISFHLFTGTAAEHLPGFVESKRLGAVVTDFSPVRVIQRWTTELANSLAQTTI 248
Query: 149 -----------VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQ 196
+ + ++DAHNVVP W AS KLEY+A+T+R K++KLL E+L ++P +
Sbjct: 249 ATTGATQSHTGIPLIQLDAHNVVPCWHASPKLEYAARTIRPKLHKLLSEFLTEFPEVAAH 308
Query: 197 PIEK----------------------WTGTRQSIDWDSIIAA--VLRKGAEVPEIGWCES 232
P +G +DWD+ A+ V R VP+I
Sbjct: 309 PCSARQSPSSPQSARASSAASSNAHFQSGLSAPVDWDAARASLQVNRTITAVPDI---VP 365
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
G A M L+ F+ +R++ + RN+P R LS LSPY HFGQI+ QR L A
Sbjct: 366 GTRAGMTTLRT----FVEQRMRYFGAVRNDP-NERVLSNLSPYFHFGQIAPQRAILVAYA 420
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
A C E++D F+EE +VRREL+DNFCFY PNYDS+ GA WA+++L+ HA D RE +YT
Sbjct: 421 AHARCRESVDVFVEEALVRRELSDNFCFYNPNYDSIAGASAWAQETLQAHAGDAREFVYT 480
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKY 412
+E+ E A T D LWNA+Q+EMV GKMHGFMRMYWAKKILEWT P EAL IAI+LNDKY
Sbjct: 481 EEELESATTHDLLWNAAQLEMVREGKMHGFMRMYWAKKILEWTASPSEALRIAIHLNDKY 540
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
+DGRDPNGYVGCMWSICG+HDQGW ERP+FGKIR+MN GC+RKFDV Y A
Sbjct: 541 NLDGRDPNGYVGCMWSICGIHDQGWGERPIFGKIRFMNLKGCQRKFDVAKYTA 593
>gi|158292451|ref|XP_313925.3| AGAP005052-PA [Anopheles gambiae str. PEST]
gi|157016998|gb|EAA09350.3| AGAP005052-PA [Anopheles gambiae str. PEST]
Length = 549
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/466 (48%), Positives = 305/466 (65%), Gaps = 13/466 (2%)
Query: 15 RIRVLKQGSL--DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+R+L D K+G V+YWM RD RV+DNWA + A A KN++P+ V FNL +FL
Sbjct: 95 RVRILSDAKTIEDGKQG-VLYWMSRDARVQDNWAFLFAQKLALKNDLPLHVCFNLVPKFL 153
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FML+GL + I F L +G A +N+P FV++ +V DFSPLR
Sbjct: 154 DATIRHFKFMLKGLEEVAEECRR-LNIQFHLLRGSAGENVPAFVKKHKIGGVVCDFSPLR 212
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ D++ + + + +VDAHN+VPVWV S+KLEY+A+T+R K+NK LP YL +P
Sbjct: 213 VPMKWVDEVRKALPMEIPLCQVDAHNIVPVWVTSDKLEYAARTIRTKVNKNLPTYLTPFP 272
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
L + I+W ++ L+ V + W G ++ L+ F+ KR
Sbjct: 273 PLVKHPFTANFEADPINWTQVLD-TLQVDRTVEAVEWATPGYAGGVKTLQT----FVEKR 327
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L + RN+P + ALS LSP+ HFGQI+ QR L +K K E++ +F EE IVRR
Sbjct: 328 LGKFNDKRNDPTE-NALSNLSPWFHFGQIAVQRAVLTVKKHGKRYSESVASFCEEAIVRR 386
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
EL+DNFCF+ NYD+L+GA++WARK+L DH DKR + Y++E+ E A+T D LWN++Q++
Sbjct: 387 ELSDNFCFHNKNYDNLQGAYDWARKTLDDHRKDKRVYCYSREELETAKTHDDLWNSAQLQ 446
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV GKMHGF+RMYWAKKILEWT PEEAL AIYLND+Y +DGRDPNGYVGCMWSI G+
Sbjct: 447 MVKEGKMHGFLRMYWAKKILEWTKTPEEALETAIYLNDRYSLDGRDPNGYVGCMWSIAGI 506
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
HDQGWKER +FGKIRYMNY GCKRKF+V+ A+V R G +R+
Sbjct: 507 HDQGWKEREIFGKIRYMNYDGCKRKFNVN---AFVVRYGGKVHRRK 549
>gi|167524661|ref|XP_001746666.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774936|gb|EDQ88562.1| predicted protein [Monosiga brevicollis MX1]
Length = 884
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/496 (48%), Positives = 316/496 (63%), Gaps = 22/496 (4%)
Query: 8 STAVQPG-------RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
S + PG R+R + G K+ V+YWM RDQR DNWAL++A A + +VP
Sbjct: 378 SQGIPPGPKDFLMERVRAVTPGVDPKEGQCVLYWMSRDQRPTDNWALLYARHLAQERDVP 437
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120
+ V F L +FL A RQ GFML GL++++ ++ + I F L G A+D +P F E
Sbjct: 438 LRVVFCLVPKFLEATIRQFGFMLDGLQVVETHLRKK-HIPFHLLTGYAKDVLPKFAEEQE 496
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
A +V D SPLR + +++ D +V +++VDAHN+VPVW AS K EY+A+T+R K
Sbjct: 497 ACAVVCDMSPLRVPMAWVKETGSKLKDMNVPLYQVDAHNIVPVWHASPKQEYAARTIRNK 556
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
I++ L L +P LE ++DW + L +V E+ W + G + M+
Sbjct: 557 IHQKLDTCLQPFPELESNSNS-VQLPDTVDWKKARES-LEINWDVKEVDWLKPGYEGGMK 614
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCP 298
+L + F+ +RL Y DRN+P ALS LSPY HFGQIS QR LE R K R
Sbjct: 615 ML----EEFINERLHRYADDRNDP-NLDALSNLSPYYHFGQISVQRVVLELRSKQRGKYA 669
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
E + ++EE +VRREL+DNFCFY YDS++GA WA+++L H+ DKREH+YT++Q E
Sbjct: 670 EGVKAYIEEAVVRRELSDNFCFYNHRYDSVEGASAWAQETLDVHSKDKREHLYTRKQLEN 729
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRD 418
A+TAD LWNASQ+++V GKMHGF+RMYWAKKILEWT PE+AL AIYLNDKYE+DGRD
Sbjct: 730 AETADDLWNASQLQLVQEGKMHGFLRMYWAKKILEWTESPEKALEDAIYLNDKYELDGRD 789
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK-- 476
PNGYVGCMWSICG+HDQGW ERPVFGKIRYMNY GCKRKFD+ A+VKR K
Sbjct: 790 PNGYVGCMWSICGIHDQGWGERPVFGKIRYMNYKGCKRKFDI---AAFVKRYPPAAKNAA 846
Query: 477 RRADSLVSGKEKELCG 492
R A L +C
Sbjct: 847 REAIHLRDSSFSHMCA 862
>gi|328953264|ref|YP_004370598.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
11109]
gi|328453588|gb|AEB09417.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
11109]
Length = 463
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/452 (50%), Positives = 304/452 (67%), Gaps = 14/452 (3%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R RVL QGS GPVV W+ RDQR DNWAL++A A +AV FNL FL A
Sbjct: 8 RARVLNQGSYGG--GPVVCWLSRDQRADDNWALLYAQHLALSRQAALAVVFNLVPHFLQA 65
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
RQ FML+GL L +N+ + I FFL QGE IP F+ + A +V+DF PLR
Sbjct: 66 TYRQYDFMLKGLEELTQNLGQK-NIPFFLLQGEPAATIPMFLAQSRAGAVVSDFDPLRIK 124
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
R+ KD++ R+S + +EVDAHN++P W+AS K E+ A TLR +I++LL ++L + +
Sbjct: 125 RQWKDQVLPRLS--IPFYEVDAHNIIPCWLASAKQEFGAYTLRPRIHRLLSDFLTEPRSI 182
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E +W + IDW S++A+ + VP + WC+ GE A L F+ L
Sbjct: 183 EIHPFRWPDSVPQIDWRSVLASAAMDRS-VPPVSWCQPGESAGRARLTS----FIQLGLP 237
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRE 313
Y RN+P++ S LSPYLHFGQI+AQR A E ++A + P EA FLEELIVRRE
Sbjct: 238 RYHLSRNDPIR-EGQSDLSPYLHFGQIAAQRVAWEVQRA--VAPTEARQAFLEELIVRRE 294
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
LADNFC++ P+YD G WA+++L H +D+R+++Y+ +FE A+T DPLWNA+Q+EM
Sbjct: 295 LADNFCWHNPDYDRFSGFPAWAQETLNKHRTDRRDYLYSLREFESARTHDPLWNAAQLEM 354
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
++ GKMHG++RMYWAKKILEWT PEEAL IA+YLN++YE+DGRDPNGY G WSI G+H
Sbjct: 355 LHRGKMHGYLRMYWAKKILEWTASPEEALEIALYLNNRYELDGRDPNGYAGVAWSIGGLH 414
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
D+ W ERPVFGKIR+M++SGCKRKF+V YIA
Sbjct: 415 DRPWGERPVFGKIRFMSFSGCKRKFEVKTYIA 446
>gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae]
Length = 528
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/436 (51%), Positives = 289/436 (66%), Gaps = 11/436 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM RDQRV+DNWAL+ A A ++ +P+ + F L +FL A RQ FML GLR ++
Sbjct: 97 VVYWMSRDQRVQDNWALLCAQGIAVRHGLPLFICFCLVPRFLDATTRQFRFMLAGLREVE 156
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SV 149
+ I F + +G A + +P FV +V DF+PLR +R +C R+ V
Sbjct: 157 TEALQ-LGIAFHVLKGSAPEALPRFVEHHKIGCVVADFNPLRVVREWCSLLCERLRGMRV 215
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE-QPIEKWTGTRQSI 208
++ +VDAHN+VP WV S+K E A+T+R KI++ LP +L +YP + P+ R +
Sbjct: 216 SVVQVDAHNIVPAWVVSDKQEAGARTMRPKIHRHLPAFLTEYPPVAVHPVSGPASVR--V 273
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
DW ++ A+V R V + W SG AA EVL D F ++RL Y RN+P +
Sbjct: 274 DWAALEASV-RADTGVGDCSWIRSGTRAAFEVL----DVFCSERLHAYADVRNDPARD-G 327
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
LS +SPY HFGQI+ QR L R+ ++D F+EE +VRRELADNFC + NYDS+
Sbjct: 328 LSNMSPYFHFGQIAVQRAVLVVCSFRRTHGVSVDVFVEEAVVRRELADNFCLHNRNYDSV 387
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
+GA WAR +L H +D+REH YT EQ E AQT D LWNA+Q +M +GKMHGFMRMYWA
Sbjct: 388 EGASSWARGTLDAHRADRREHTYTLEQLEHAQTHDELWNAAQTQMTRDGKMHGFMRMYWA 447
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
KKILEW+ PEEAL AIYLND+YE+DGRDPNGYVGCMWSICGVHD+ W ERPVFGK+RY
Sbjct: 448 KKILEWSVSPEEALRHAIYLNDRYELDGRDPNGYVGCMWSICGVHDRAWAERPVFGKVRY 507
Query: 449 MNYSGCKRKFDVDGYI 464
M+YSGC RKFDV YI
Sbjct: 508 MSYSGCLRKFDVGCYI 523
>gi|194757449|ref|XP_001960977.1| GF13637 [Drosophila ananassae]
gi|190622275|gb|EDV37799.1| GF13637 [Drosophila ananassae]
Length = 538
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/471 (50%), Positives = 311/471 (66%), Gaps = 17/471 (3%)
Query: 15 RIRVL-KQGSL-DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL K G + D G V+YWM RD RV+DNWAL+ A A K +P+AV F L +FL
Sbjct: 80 RVRVLSKNGDVGDSCEGGVIYWMSRDGRVQDNWALLFAQRLALKLELPLAVVFCLVPKFL 139
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ E I F L G A D IP FV+ ++ DF+PLR
Sbjct: 140 NATIRHYKFMMGGLQEVEQQCRE-LDIPFHLLLGPAVDRIPEFVKSRKVGAVICDFAPLR 198
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ D + + +V + +VDAHNVVPVWVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 199 VPRKWVDDVVKALPKTVPLVQVDAHNVVPVWVASDKQEYAARTIRNKINSKLSEYLTEFP 258
Query: 193 -MLEQPIEKWTGTRQ--SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+++ P TG R+ +DW + +L V E+ W + G AA + L F
Sbjct: 259 PVVKHP--HGTGCRKVDPVDWTAAYE-MLECDKSVDEVDWAKPGYKAACKQLYE----FC 311
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
++RL+ + RN+PL A+SGLSP+LHFGQISAQRCALE ++ R + + F EE I
Sbjct: 312 SRRLRQFNDKRNDPLAD-AISGLSPWLHFGQISAQRCALEVQRFRGQHKASAEAFCEEAI 370
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRRELADNFC+Y +YDSLKG WA ++L H DKR+ Y+ E+ EKA T D LWN++
Sbjct: 371 VRRELADNFCYYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEEMEKALTYDDLWNSA 430
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q+++V GKMHGF+RMYWAKKILEWT PE+AL AI LNDKY +DGRDPNGYVGCMWSI
Sbjct: 431 QLQLVREGKMHGFLRMYWAKKILEWTETPEQALEYAILLNDKYSLDGRDPNGYVGCMWSI 490
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRAD 480
GVHD GWKER +FGKIRYMNY GC+RKFDV+ A+V R G K++ +
Sbjct: 491 GGVHDMGWKERSIFGKIRYMNYQGCRRKFDVN---AFVIRYGGKVHKKKKE 538
>gi|195119354|ref|XP_002004196.1| GI19782 [Drosophila mojavensis]
gi|193909264|gb|EDW08131.1| GI19782 [Drosophila mojavensis]
Length = 538
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/472 (48%), Positives = 310/472 (65%), Gaps = 14/472 (2%)
Query: 10 AVQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
A + R+RVL S K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L
Sbjct: 76 AFRKKRVRVLSSASDVKENCNGGVVYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCL 135
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A R FML GL+ +++ E + F L G A + +P FV++ ++ D
Sbjct: 136 VPKFLNATLRHYKFMLGGLQEVEQQCRE-LNVSFHLLLGPAVERLPQFVKDEKIGAVICD 194
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F+PLR R+ + + + V + +VDAHNVVP+WV S+K EY+A+T+R KIN L EY
Sbjct: 195 FAPLRLPRQWVEDVVKALPAHVPLTQVDAHNVVPLWVTSDKQEYAARTIRNKINSKLSEY 254
Query: 188 LIDYP-MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
L ++P +++ G+R S+DW + +L V + W + G AA L
Sbjct: 255 LTEFPPLIKHAYGNVKGSR-SVDWTAAYE-MLSCDKSVDAVEWAKPGYTAACRQLYD--- 309
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
F T+RL+++ RN+P+ ALSGLSP+LHFGQISAQRC LE + + + E+++ + E
Sbjct: 310 -FCTRRLRHFNDKRNDPMAD-ALSGLSPWLHFGQISAQRCVLEVGRYKTIYKESVEAYFE 367
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
E IVRRELADNFC+Y +YDSLKG + WA +SL+ H DKR Y+ E+ E ++T D LW
Sbjct: 368 EAIVRRELADNFCYYNEHYDSLKGLYSWAYESLQAHRKDKRSPCYSLEELEHSRTYDDLW 427
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
N++Q+++V GKMHGF+RMYWAKKILEWT PE+AL +I LNDKY +DGRDPNGYVGCM
Sbjct: 428 NSAQLQLVKEGKMHGFLRMYWAKKILEWTETPEQALEYSILLNDKYSLDGRDPNGYVGCM 487
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
WSI G+HDQGWKER +FGKIRYMNY GCKRKFDV+ AYV R G K++
Sbjct: 488 WSIGGIHDQGWKERAIFGKIRYMNYQGCKRKFDVN---AYVMRYGGKVHKKK 536
>gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura]
gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/468 (50%), Positives = 306/468 (65%), Gaps = 13/468 (2%)
Query: 15 RIRVLKQGS--LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + + DK G VVYWM RD RV+DNWAL+ A A K +P+AV F L +FL
Sbjct: 83 RVRVLSKVNDVQDKCSGGVVYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFL 142
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ ++ E I F L G A D +P FVR +V DF+PLR
Sbjct: 143 NATIRHYKFMMGGLQEVEEQCRE-LGIPFHLLLGPAVDRLPEFVRSKDVGAVVCDFAPLR 201
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + +V + +VDAHNVVP+WVAS+K EY+A+T+R KIN L E+L D+P
Sbjct: 202 VPRKWVEDVAKALPKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFP 261
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+++ P + + IDW + A +L +V E+ W + G AA L F ++
Sbjct: 262 PVIKHPYGEGCKKVKPIDWPAAYA-MLECDMDVDEVKWAKPGYKAACLQLYE----FCSR 316
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL + RN+P ALSGLSP+LHFGQISAQRC LE ++ R + D + EE IVR
Sbjct: 317 RLGKFNDKRNDPTVD-ALSGLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEEAIVR 375
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFC+Y NYDSLKG WA +SL+ H DKR+ YT E+ E++ T D LWN++Q+
Sbjct: 376 RELADNFCYYNENYDSLKGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQL 435
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PE+AL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 436 QLVREGKMHGFLRMYWAKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 495
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
+HD GWKER +FGKIRYMNY GCKRKFDV+ A+V R G K++
Sbjct: 496 IHDMGWKERAIFGKIRYMNYQGCKRKFDVN---AFVMRYGGKVHKKKG 540
>gi|443696862|gb|ELT97477.1| hypothetical protein CAPTEDRAFT_152478 [Capitella teleta]
Length = 504
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/455 (48%), Positives = 299/455 (65%), Gaps = 12/455 (2%)
Query: 14 GRIRVL---KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
R+R L K+ S D K V+YWM RDQRV+DNWAL+++ A VP+ + F L +
Sbjct: 49 NRVRTLTPCKKPSPDSKG--VLYWMSRDQRVQDNWALLYSQKLALDLEVPLYINFCLVPK 106
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ GFML+GL+ +++ + + +I F L G A D++P FV + +VTDF P
Sbjct: 107 FLEATIRQFGFMLKGLQEVEKECK-SLRISFHLHLGHATDHLPQFVEDHNIGAIVTDFCP 165
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + + + D + + +VDAHN+VP W AS K EY A+T+R KI+ L +Y +
Sbjct: 166 LRVPTKWVTDLVKSLPDEIPLFQVDAHNIVPCWEASPKQEYGARTIRNKIHNQLSKYFTE 225
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P + Q + ++DW + L V E+ W G A ++ L + F+
Sbjct: 226 FPPVIQHAFEAKAPCPAVDWIEAEKS-LEVDRSVKEVDWATPGTTAGLKNL----ESFIQ 280
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
KRL N+ DRNNP K ALS +SP+ HFG ++ QR L + + +++ ++EE ++
Sbjct: 281 KRLGNFDADRNNPNK-NALSNMSPWFHFGHVAPQRAMLMVNEMKTKYSKSVAAYIEEGVI 339
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL DN+CFYQPNYD++ GA+EWAR +LK H DKRE++Y+KEQ EK +T D LWNA+Q
Sbjct: 340 RRELCDNYCFYQPNYDNIDGAYEWARLTLKAHRKDKREYVYSKEQLEKGKTHDDLWNAAQ 399
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+++ GKMHGF+RMYWAKKILEWT PE L AIYLNDKY +DGRDPNGYVGCMWSIC
Sbjct: 400 TQLLIEGKMHGFLRMYWAKKILEWTETPERGLEEAIYLNDKYSLDGRDPNGYVGCMWSIC 459
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G+HDQGW ER VFGKIR+MNY+GCKRKFDV +++
Sbjct: 460 GIHDQGWAERAVFGKIRFMNYNGCKRKFDVAAFVS 494
>gi|345496163|ref|XP_001603285.2| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Nasonia
vitripennis]
Length = 546
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/451 (49%), Positives = 299/451 (66%), Gaps = 8/451 (1%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R+L + + +VYWMFRD RV DNWA++ A A KN VP+ V F + +FL
Sbjct: 82 RVRILTDSDEVSSESKGIVYWMFRDARVHDNWAMLFAQKIALKNKVPLHVCFCILPKFLD 141
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R F+L L ++++ +E I F L GE I NFV + ++ DF PLR
Sbjct: 142 ATIRHYKFLLEALEEVEKDCKE-LNINFHLLHGEPNTAIINFVEKYKMGAVIADFFPLRL 200
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ I ++ + + +VDAHN+VP WVASEKLEY+A+T+R KIN L E+L ++P
Sbjct: 201 PLFWLEDIKKKLPKKIPLCQVDAHNIVPCWVASEKLEYAARTIRNKINSKLDEFLTEFPP 260
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + I+WD+ + VL + V +I W ++G + L D FL RL
Sbjct: 261 VIKHPHTSDQKFDKINWDTALDDVLVDKS-VDKITWAKAGYKGGIAEL----DKFLKIRL 315
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ Y RNNP+ ALS LSP+ HFG IS QRC LEA+K + ++++ F+EE IVRRE
Sbjct: 316 RIYDEKRNNPI-FNALSNLSPWFHFGMISVQRCILEAKKYKSQYNKSVEAFMEEAIVRRE 374
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
L+DNFCFY +YDSLKGA++WAR++L H +DKR++IYT + E T D LWNA+++++
Sbjct: 375 LSDNFCFYNEHYDSLKGAYDWARETLNQHRNDKRDYIYTLNELENGLTHDDLWNAAEIQL 434
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V GK+HGF+RMYWAKKILEWT P++AL +IYLNDKY +DGRDPNGYVGCMWSICGVH
Sbjct: 435 VKEGKIHGFLRMYWAKKILEWTETPDDALKWSIYLNDKYSMDGRDPNGYVGCMWSICGVH 494
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
DQGW+ERPVFGKIRYMNY GC+RKFDV ++
Sbjct: 495 DQGWRERPVFGKIRYMNYKGCERKFDVQAFV 525
>gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis]
gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis]
Length = 540
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/468 (50%), Positives = 306/468 (65%), Gaps = 13/468 (2%)
Query: 15 RIRVLKQGS--LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + + DK G VVYWM RD RV+DNWAL+ A A K +P+AV F L +FL
Sbjct: 83 RVRVLSKVNDVQDKCSGGVVYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFL 142
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ ++ + I F L G A D +P FVR +V DF+PLR
Sbjct: 143 NATIRHYKFMMGGLQEVEEQCRD-LGIPFHLLLGPAVDRLPEFVRSKDVGAVVCDFAPLR 201
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + +V + +VDAHNVVP+WVAS+K EY+A+T+R KIN L E+L D+P
Sbjct: 202 VPRKWVEDVAKALPKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFP 261
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+++ P + + IDW + A +L +V E+ W + G AA L F ++
Sbjct: 262 PVIKHPYGEGCKKVKPIDWPAAYA-MLECDMDVDEVKWAKPGYKAACLQLYE----FCSR 316
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL + RN+P ALSGLSP+LHFGQISAQRC LE ++ R + D + EE IVR
Sbjct: 317 RLGKFNDKRNDP-TVDALSGLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEEAIVR 375
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFC+Y NYDSLKG WA +SL+ H DKR+ YT E+ E++ T D LWN++Q+
Sbjct: 376 RELADNFCYYNENYDSLKGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQL 435
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PE+AL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 436 QLVREGKMHGFLRMYWAKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 495
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
+HD GWKER +FGKIRYMNY GCKRKFDV+ A+V R G K++
Sbjct: 496 IHDMGWKERAIFGKIRYMNYQGCKRKFDVN---AFVMRYGGKVHKKKG 540
>gi|195332255|ref|XP_002032814.1| GM20985 [Drosophila sechellia]
gi|194124784|gb|EDW46827.1| GM20985 [Drosophila sechellia]
Length = 555
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/467 (49%), Positives = 307/467 (65%), Gaps = 13/467 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 99 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 158
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 159 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGPAVEKLPQFVKSKDIGAVVCDFAPLR 217
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + +V + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 218 LPRQWVEDVGKALPQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 277
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+++ P +++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 278 PVVQHPHGTGCKNVKAVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 332
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 333 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 391
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++Q+
Sbjct: 392 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQL 451
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PE+AL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 452 QLVREGKMHGFLRMYWAKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 511
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VHD GWKER VFGK+RYMNY GC+RKFDV+ A+V R G K++
Sbjct: 512 VHDMGWKERAVFGKVRYMNYQGCRRKFDVN---AFVMRYGGKVHKKK 555
>gi|383787199|ref|YP_005471768.1| Deoxyribodipyrimidine photo-lyase type II [Fervidobacterium
pennivorans DSM 9078]
gi|383110046|gb|AFG35649.1| Deoxyribodipyrimidine photo-lyase type II [Fervidobacterium
pennivorans DSM 9078]
Length = 465
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/461 (50%), Positives = 301/461 (65%), Gaps = 14/461 (3%)
Query: 15 RIRVLKQ--GSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
RIRVLKQ + +GPVVYWM RDQR DNWAL++A A KNNV + V FN+ FL
Sbjct: 11 RIRVLKQVESHFSQIKGPVVYWMQRDQRAFDNWALLYAQQLALKNNVGLLVVFNIVPSFL 70
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FML+GL + +EE L F F GE I ++E A LVTDF+PL+
Sbjct: 71 NAPFRHYDFMLQGLFQTKVFLEELNVPLVFTF-GEPVREISKLIKEVNACALVTDFNPLK 129
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
++ K+ + ++ + ++EVDAHN+VP + S+K EY A TLR KI K L E+L +P
Sbjct: 130 IVKNWKENLIRVLN--IPVYEVDAHNIVPAFFVSQKQEYGAYTLRPKIKKYLKEFLTSFP 187
Query: 193 MLEQ-PIEKWTGTRQSI--DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
++ P+ + S+ +++ I+ + GA P + W + G M + + F
Sbjct: 188 APKKMPVSNLEFEKLSVFNNFEEILKRLDVDGAVAP-VNWLKPGFTEGMRLF----EEFS 242
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
K+LK Y RN+P K S LS YLHFGQI+ QR ALE + + PE++ FLEELI
Sbjct: 243 RKKLKLYKDLRNDPTKD-VTSNLSAYLHFGQIAPQRVALEIIQYERYYPESVADFLEELI 301
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRRELADNFC Y NYDS G EWA+KSL H +DKRE+IY+ E+FEKA+T D LWNA+
Sbjct: 302 VRRELADNFCLYNENYDSFDGFPEWAKKSLNAHRNDKREYIYSLEEFEKAKTHDDLWNAA 361
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q+EMV GKMHG++RMYWAKKILEWT PE+AL AIYLNDKYE+DGRDPNGY G W+I
Sbjct: 362 QIEMVKKGKMHGYLRMYWAKKILEWTRSPEDALKFAIYLNDKYELDGRDPNGYTGIAWAI 421
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
GVHD+ W ERP+FG +RYM+Y GCKRKF ++ YI YV+ I
Sbjct: 422 GGVHDRPWAERPIFGMVRYMSYEGCKRKFSIEKYIQYVENI 462
>gi|1401030|dbj|BAA05042.1| photolyase [Drosophila melanogaster]
Length = 640
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/467 (49%), Positives = 304/467 (65%), Gaps = 13/467 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 184 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 243
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 244 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 302
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 303 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 362
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 363 PVVRHPHGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 417
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 418 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 476
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++Q+
Sbjct: 477 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQL 536
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PE AL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 537 QLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 596
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VHD GWKER +FGK+RYMNY GC+RKFDV+ A+V R G K++
Sbjct: 597 VHDMGWKERAIFGKVRYMNYQGCRRKFDVN---AFVMRYGGKVHKKK 640
>gi|195581344|ref|XP_002080494.1| GD10512 [Drosophila simulans]
gi|194192503|gb|EDX06079.1| GD10512 [Drosophila simulans]
Length = 555
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/467 (49%), Positives = 306/467 (65%), Gaps = 13/467 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 99 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 158
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 159 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGPAVEKLPQFVKSKDIGAVVCDFAPLR 217
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + +V + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 218 LPRQWVEDVGKALPQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 277
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+++ P +++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 278 PVVQHPHGTGCKNVKAVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 332
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 333 RLRHFNDKRNDP-TADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 391
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFCFY +YDSLKG WA ++L H DKR+ Y E+ EK+ T D LWN++Q+
Sbjct: 392 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYNLEELEKSLTYDDLWNSAQL 451
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PE+AL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 452 QLVREGKMHGFLRMYWAKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 511
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VHD GWKER +FGK+RYMNY GC+RKFDV+ A+V R G K++
Sbjct: 512 VHDMGWKERAIFGKVRYMNYQGCRRKFDVN---AFVMRYGGKVHKKK 555
>gi|195474508|ref|XP_002089533.1| GE19152 [Drosophila yakuba]
gi|194175634|gb|EDW89245.1| GE19152 [Drosophila yakuba]
Length = 535
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/467 (49%), Positives = 305/467 (65%), Gaps = 13/467 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P++V F L +FL
Sbjct: 79 RVRVLSKTDDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFL 138
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ ++ DF+PLR
Sbjct: 139 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGPAVEKLPEFVKSKDIGAVICDFAPLR 197
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L E+L ++P
Sbjct: 198 LPRQWVENVSKALPKSVPMVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFP 257
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 258 PVVRHPFGTGCKNVNAVDWLAAYAS-LQCDMEVEEVQWAKPGYKAACQQLYE----FCSR 312
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D+F EE IVR
Sbjct: 313 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQYKASADSFCEEAIVR 371
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFCFY YDSLKG WA ++L H DKR+ Y E+ EK+ T D LWN++Q+
Sbjct: 372 RELADNFCFYNDQYDSLKGLSSWAYQTLDAHRKDKRDPCYRLEELEKSLTYDDLWNSAQL 431
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PEEAL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 432 QLVREGKMHGFLRMYWAKKILEWTATPEEALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 491
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VHD GWKER +FGK+RYMNY GCKRKFDV+ A+V R G K++
Sbjct: 492 VHDMGWKERAIFGKVRYMNYQGCKRKFDVN---AFVMRYGGKVHKKK 535
>gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex]
Length = 523
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/458 (49%), Positives = 304/458 (66%), Gaps = 13/458 (2%)
Query: 15 RIRVL-KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R R+L K L G ++YWM R+QRV+DNWAL++A A K +P+ + F L FLG
Sbjct: 64 RCRLLSKSMELGDCGGGILYWMSREQRVQDNWALLYAQRLALKMKLPLHICFCLVPTFLG 123
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A RQ GFML+GL ++ ++ +I F L +GE++ +P+ + + +V DFSPLR
Sbjct: 124 ATIRQFGFMLKGLEEVETECQK-LKIEFHLLKGESQICVPDLITKLKLDAVVADFSPLRV 182
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
DK+ + +V ++DAHN+VPVWVAS+K E A+T+R KIN L E+L ++P
Sbjct: 183 PLSWIDKVKESIPKNVPFCQIDAHNIVPVWVASDKQEVGARTIRKKINDKLDEFLTEFPP 242
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
++ P T + S+DW + A L V E+ W G + ++ L F +R
Sbjct: 243 VIVHPHPAKTKAK-SVDWKAA-DAYLEVDRTVGEVDWITPGTKSGLQELFN----FCQRR 296
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK Y RN+P ALS LSP+LHFGQISAQRC LE + + +++D ++EE I+RR
Sbjct: 297 LKMYAEKRNDP-NLAALSNLSPWLHFGQISAQRCILEVKGYKTKHAKSVDAYMEETIIRR 355
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
EL+DNFCFY NYD+LKGA WA+++L+ H DKR + + +Q E+ +T D LWNASQ++
Sbjct: 356 ELSDNFCFYNTNYDNLKGAANWAQETLEVHKKDKRPALLSAQQLEEGKTHDDLWNASQIQ 415
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
+ GKMHGF+RMYWAKKILEWT PEEAL IAIYLND+Y +DGRDP+GYVGCMWSICG+
Sbjct: 416 LTRTGKMHGFLRMYWAKKILEWTETPEEALRIAIYLNDRYSLDGRDPSGYVGCMWSICGI 475
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
HD GWK+R VFGKIRYMNY GC+RKFDV +A+V R
Sbjct: 476 HDMGWKQRDVFGKIRYMNYKGCQRKFDV---VAFVHRF 510
>gi|303283462|ref|XP_003061022.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457373|gb|EEH54672.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 457
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/459 (52%), Positives = 297/459 (64%), Gaps = 23/459 (5%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W RDQRV DNWAL+HA+ A NVPVA+ F L F A ARQ FMLRGLR + +
Sbjct: 1 WCSRDQRVDDNWALLHALSVAKSRNVPVAIVFVLVPSFASASARQYAFMLRGLREMAKTC 60
Query: 94 EETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLREIRRCKDKICNRVSDS-VT 150
E T ++ F L +G+A ASL+VTDFSPLR R ++ + + + + VT
Sbjct: 61 EAT-RLPFHLVRGDANPAAAAAAAATRLDASLVVTDFSPLRAPREWRNDLSDALKRANVT 119
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW--------- 201
+HEVDAHNVVPVW AS K EY+A+T+R +I K L +L +P + +
Sbjct: 120 VHEVDAHNVVPVWEASNKREYAARTIRPRITKRLAAFLTSFPTRDAVRDAALAAAASPRA 179
Query: 202 --TGTRQSIDWDSIIA-AVLRKGAEVPEIGWCE----SGEDAAMEVLKGSKDGFLTKRLK 254
T + +DWD++IA A R G VPE GE AA L G D FL RL
Sbjct: 180 TDVPTPERVDWDALIADARGRDGGVVPETLHPTRRKPPGEAAARRALVGGPDAFLPSRLA 239
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT-FLEELIVRRE 313
Y RN+P PRALSGLSPYLHFGQ+SAQR ALE AR A F+EE++VR E
Sbjct: 240 MY-DKRNDPNVPRALSGLSPYLHFGQLSAQRVALETNAARTEATAAAADAFVEEVVVRSE 298
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
L+DN+CF++PNYD++ GA WA +SL+ HA D R+ Y+ E+ E T D LWNA+Q+EM
Sbjct: 299 LSDNYCFHEPNYDNINGASGWAIESLRLHAEDARDPAYSLEELESGSTRDELWNAAQLEM 358
Query: 374 VYNGKMHGFMRMYWAKKILEWTT-GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
V+ G MHGF+RMYWAKKILEWT GPE AL AIYLNDKY++DGRD NGYVGCMW+ICGV
Sbjct: 359 VHFGAMHGFLRMYWAKKILEWTAEGPEVALERAIYLNDKYQLDGRDSNGYVGCMWAICGV 418
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
HD WKER VFGKIRYMNY+GCKRKF +D Y+ ++R V
Sbjct: 419 HDNAWKERDVFGKIRYMNYNGCKRKFKIDEYVERIEREV 457
>gi|24586396|ref|NP_523653.2| photorepair, isoform A [Drosophila melanogaster]
gi|7304148|gb|AAF59185.1| photorepair, isoform A [Drosophila melanogaster]
gi|19527513|gb|AAL89871.1| RE21178p [Drosophila melanogaster]
gi|220948232|gb|ACL86659.1| phr-PA [synthetic construct]
gi|220960434|gb|ACL92753.1| phr-PA [synthetic construct]
Length = 555
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/467 (49%), Positives = 303/467 (64%), Gaps = 13/467 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 99 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 158
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 159 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 217
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL +P
Sbjct: 218 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFP 277
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 278 PVVRHPHGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 332
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 333 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 391
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++Q+
Sbjct: 392 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQL 451
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PE AL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 452 QLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 511
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VHD GWKER +FGK+RYMNY GC+RKFDV+ A+V R G K++
Sbjct: 512 VHDMGWKERAIFGKVRYMNYQGCRRKFDVN---AFVMRYGGKVHKKK 555
>gi|24586398|ref|NP_724613.1| photorepair, isoform B [Drosophila melanogaster]
gi|21627730|gb|AAM68868.1| photorepair, isoform B [Drosophila melanogaster]
Length = 535
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/467 (49%), Positives = 303/467 (64%), Gaps = 13/467 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 79 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 138
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 139 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 197
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL +P
Sbjct: 198 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFP 257
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 258 PVVRHPHGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 312
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 313 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 371
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++Q+
Sbjct: 372 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQL 431
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PE AL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 432 QLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 491
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
VHD GWKER +FGK+RYMNY GC+RKFDV+ A+V R G K++
Sbjct: 492 VHDMGWKERAIFGKVRYMNYQGCRRKFDVN---AFVMRYGGKVHKKK 535
>gi|9631430|ref|NP_048306.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
domestica GB:D31902 [Melanoplus sanguinipes
entomopoxvirus]
gi|4049783|gb|AAC97743.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
domestica GB:D31902 [Melanoplus sanguinipes
entomopoxvirus]
Length = 466
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/448 (47%), Positives = 294/448 (65%), Gaps = 26/448 (5%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
+K V+YW RDQR++DNW LI+A + A K+ + + L +FL A RQ FML
Sbjct: 29 NKIYNNVLYWCVRDQRIQDNWGLIYAQELALKSKSSLHMCICLVPEFLNATIRQFDFMLN 88
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
G++ ++ + I F L G + D +P F+++ +L+ DF P++ +++ ++
Sbjct: 89 GVKQMEEECK-NLNIHFHLLIGISVDVLPKFIKKYNIGVLIVDFYPIKIFNNWVNQLISK 147
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY-PMLEQPIE---- 199
++ + +++VD+HN+VP W+AS KLEYSAKT+R KIN L EYL ++ P+++
Sbjct: 148 IN--IDVYQVDSHNIVPCWIASNKLEYSAKTIRNKINYKLSEYLTEFIPIIKHTYNTYIK 205
Query: 200 ---KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
W QS++ D V + W +SG A ++L D F+ RLK+Y
Sbjct: 206 INNNWKKAEQSLNIDR----------NVKPVSWAKSGTKYAFKIL----DIFIQNRLKDY 251
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
RN+P A+S LSP++HFGQIS QR LE K +KL P++++ F EE I+R+EL D
Sbjct: 252 AKKRNDP-NANAISNLSPWIHFGQISTQRIILEINKYKKLYPKSVEVFCEEAIIRKELCD 310
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
NFC+Y NYD++ GA WA K+L +H +D R+HIY+ Q E A T D LWNASQ +M+
Sbjct: 311 NFCYYNENYDNINGANNWAIKTLNEHKNDTRKHIYSLYQLENALTHDNLWNASQKQMIIY 370
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
GKMHG++RMYWAKKILEWT PEEAL I+IYLNDKY IDGRDPNGYVGCMWSICG+HD+
Sbjct: 371 GKMHGYLRMYWAKKILEWTKSPEEALYISIYLNDKYFIDGRDPNGYVGCMWSICGIHDRA 430
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYI 464
WKERP+FGKIRYM+Y GC+RKFDVD +I
Sbjct: 431 WKERPIFGKIRYMSYEGCRRKFDVDLFI 458
>gi|195431012|ref|XP_002063542.1| GK19412 [Drosophila willistoni]
gi|194159627|gb|EDW74528.1| GK19412 [Drosophila willistoni]
Length = 534
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/455 (49%), Positives = 296/455 (65%), Gaps = 15/455 (3%)
Query: 15 RIRVLKQGSLDKK---RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
R+R+L + +D + RG VVYWM RD R++DNWAL+ A A K ++P+AV F L +F
Sbjct: 78 RVRILSK-VIDVREGCRGGVVYWMSRDGRIQDNWALLFAQRLALKLDLPLAVVFCLVPKF 136
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
L A R FML GL+ +++ + I F L G A + +P FVR+ ++ DF+PL
Sbjct: 137 LNATLRHYKFMLGGLKEVEKECRD-LNIGFHLLLGPAREELPKFVRDNDIGAVICDFAPL 195
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R R+ + + + V +VDAHN+VP+WVAS+K EY+A+T+R KIN L EYL ++
Sbjct: 196 RVPRQWVEDVTKGLPKDVPFTQVDAHNIVPLWVASDKQEYAARTIRNKINSKLGEYLTEF 255
Query: 192 PML-EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P++ + P K + I+W S +L V E+ W + G +AA L F T
Sbjct: 256 PVVAKHPHGK---SSAKINWTSAYE-MLECDKSVDEVEWAQPGYNAACRQLYE----FCT 307
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+RL + RNNP ALSGLSP+LHFGQISAQRC LE ++ K + + F EE IV
Sbjct: 308 RRLGKFHNQRNNPTAD-ALSGLSPWLHFGQISAQRCVLEVKRYAKQHKASTEAFCEETIV 366
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RRELADNFC+Y NYDSLKG WA +SL H D R+ Y E E A+T D LWN++Q
Sbjct: 367 RRELADNFCYYNENYDSLKGVTSWAYQSLDAHRKDPRDPCYKLEDLETARTYDDLWNSAQ 426
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+++V GKMHGF+RMYW KKILEWT PE+AL I LNDKY +DGRDPNGYVGCMWSI
Sbjct: 427 LQLVKEGKMHGFLRMYWGKKILEWTESPEQALEWTILLNDKYSLDGRDPNGYVGCMWSIG 486
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G+HD WKERP+FGK+RYMNY GCKRKFDV+ ++A
Sbjct: 487 GIHDTAWKERPIFGKVRYMNYQGCKRKFDVNAFVA 521
>gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 448
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/455 (49%), Positives = 295/455 (64%), Gaps = 14/455 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P RI+ ++ G+ D GPV+YWM RDQR++DNWAL+HA D A + P+ + F L D
Sbjct: 3 VHPRRIQEIRTGNQDS--GPVIYWMSRDQRIKDNWALVHAQDLALHLSRPLRIVFCLADG 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ FMLRGL + E+ I L +GEA +P ++ + AS LV DF P
Sbjct: 61 FLQAGLRQFDFMLRGLHECA-GVAESLNIPLDLVRGEAGLVLPAYLEKHRASFLVMDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + + + ++ + H VDAHN+VP W S+K EY+A+T+R KI++ L E+L D
Sbjct: 120 LRIKKSWQKAVLDKTG--IPAHLVDAHNIVPCWSTSQKQEYAARTIRPKIHRQLEEFLED 177
Query: 191 YPMLE-QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
YP ++ P GT +D D ++ + P + W G A EVL D F+
Sbjct: 178 YPDVKPHPYPAQAGT--GVDPDGLLQEMDLDKTITP-VRWLSPGPAGAGEVL----DDFM 230
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
RL Y RN+P + LS LSPYLHFG SAQR AL+ +K ++ + FLEELI
Sbjct: 231 AHRLSLYHEQRNDP-NMQVLSNLSPYLHFGHTSAQRVALQVKKQLDTPVQSREAFLEELI 289
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRREL+DNFC Y NYD+ +G WA+K+L H SD R+++Y + E+ T DPLWNA+
Sbjct: 290 VRRELSDNFCHYNQNYDNFQGLPAWAQKTLDKHRSDSRDYLYEPQALEQGLTHDPLWNAA 349
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q EMV +GKMHG+MRMYWAKKILEW+ PE+A+ AIYLNDKYE+DGRDPNGY G MWSI
Sbjct: 350 QTEMVKSGKMHGYMRMYWAKKILEWSRSPEQAIDTAIYLNDKYELDGRDPNGYTGIMWSI 409
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
GVHD+GWKER +FG +RYMNY+GC+RKF+VD YI
Sbjct: 410 GGVHDRGWKERKIFGTVRYMNYNGCRRKFNVDAYI 444
>gi|194863692|ref|XP_001970566.1| GG23307 [Drosophila erecta]
gi|190662433|gb|EDV59625.1| GG23307 [Drosophila erecta]
Length = 554
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/466 (49%), Positives = 301/466 (64%), Gaps = 13/466 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P++V F L +FL
Sbjct: 99 RVRVLSKSDDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFL 158
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 159 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGPAVEKLPEFVKSKDIGAVVCDFAPLR 217
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L E+L ++P
Sbjct: 218 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFP 277
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P +DW + A+ L+ EV E+ W G A + L F ++
Sbjct: 278 PVVRHPYGTGCKNVNVVDWSAAYAS-LQCDMEVGEVQWATPGYKGACQQLYE----FCSR 332
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 333 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 391
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++Q+
Sbjct: 392 RELADNFCFYNEHYDSLKGLSTWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQL 451
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V GKMHGF+RMYWAKKILEWT PE AL AI LNDKY +DGRDPNGYVGCMWSI G
Sbjct: 452 QLVREGKMHGFLRMYWAKKILEWTATPERALEYAILLNDKYSLDGRDPNGYVGCMWSIGG 511
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
VHD GWKER +FGK+RYMNY GC+RKFDV+ A+V R G K+
Sbjct: 512 VHDMGWKERAIFGKVRYMNYQGCRRKFDVN---AFVMRYGGKVHKK 554
>gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
Length = 451
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/454 (49%), Positives = 287/454 (63%), Gaps = 12/454 (2%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR+L + GPVVYWM RDQR +NWAL+ A + +NN P+ VAFNL
Sbjct: 2 IHPERIRILNHE--NPIEGPVVYWMSRDQRAENNWALLFAEQLSMQNNQPLIVAFNLVPS 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A R FML+GL +++ +E I F + G E IP F C A +VTDFSP
Sbjct: 60 YPEATLRHYDFMLKGLMQVEQQLE-ALNIPFLVLSGNPEREIPRFTASCRAGAVVTDFSP 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ K+K+ + + +EVDAHN+VP AS KLE+SA+T+R KIN+LL +L
Sbjct: 119 LKISETWKNKVLEHIP--IPFYEVDAHNIVPCRTASNKLEFSARTIRPKINRLLETFLTG 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P L+ + ++W+ + LR V + W + G DAA + LK F+
Sbjct: 177 FPELKGQSPERKSAVPPVEWNKLYE-TLRINRAVAPVTWIDPGGDAATKTLKK----FID 231
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
RL +YP RN+P A+S LSPYLHFGQISAQ A E +A A D FLEEL++
Sbjct: 232 HRLASYPKLRNDP-NAHAVSDLSPYLHFGQISAQHVAREI-QASDAPRSAKDVFLEELVI 289
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RRELADN+C Y +YDSLKG WA ++L+ H +D RE +YT + EKA T DPLWNA+Q
Sbjct: 290 RRELADNYCLYNKHYDSLKGIHPWAAETLERHRTDTREFLYTADDLEKASTHDPLWNAAQ 349
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
E+ GKMHG++RMYWAKKILEWT P+ A A+ LNDKY +DGRDPNG+ G WSI
Sbjct: 350 KELCNTGKMHGYLRMYWAKKILEWTPDPDTAFETALLLNDKYSLDGRDPNGFTGIAWSIG 409
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
GVHD+ W ERPVFGKIRYMNY+GC RKF+VD YI
Sbjct: 410 GVHDRAWFERPVFGKIRYMNYNGCVRKFNVDNYI 443
>gi|386001823|ref|YP_005920122.1| Deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
harundinacea 6Ac]
gi|357209879|gb|AET64499.1| Deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
harundinacea 6Ac]
Length = 448
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/458 (50%), Positives = 300/458 (65%), Gaps = 13/458 (2%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P R R+ K+G + +GPV+YWM RDQR +NWAL A + A + P+AV F L ++FL
Sbjct: 3 PERARIWKEGR--EGKGPVIYWMTRDQRAEENWALAFAQELALERRAPLAVVFALKEEFL 60
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
GA RQ GFMLRGL ++R + + +I F L QG+ + +P+FVRE AS LVTDFSPL
Sbjct: 61 GAAMRQYGFMLRGLEEVERTLRDK-EIPFVLLQGDPGETVPDFVREHSASALVTDFSPLA 119
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R +K + + + EVDAHNVVP WVAS K EY+A+T R K+ +LLP + D P
Sbjct: 120 TKRAWMEKAEEGLD--LPLREVDAHNVVPCWVASPKQEYAARTFRPKVRRLLPIFCEDPP 177
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
++ W + WD + + + VPE+ W + G AA + FL ++
Sbjct: 178 AVQVHPHPWD-LDAGVSWDRLRRDLRVDRS-VPEVEWIKPGAAAARR----ALRRFLGEK 231
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L Y DRN+P S LSPYLHFGQISAQR ALEA K + P + FLEEL+VRR
Sbjct: 232 LSRYDGDRNDPTL-DGQSNLSPYLHFGQISAQRVALEAAKW-EADPRSKAAFLEELVVRR 289
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
EL+DNFCFY YD+ WARK+L +H +D RE++Y +E+ E A+T DPLWNA+Q E
Sbjct: 290 ELSDNFCFYNRGYDTFDAFPAWARKTLDEHRNDPREYLYDQEELEGAKTHDPLWNAAQRE 349
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV GKMHG++RMYWAKKILEWT PEEAL IAIYLND+YE+DGRDP+GYVG WSI GV
Sbjct: 350 MVVRGKMHGYLRMYWAKKILEWTDSPEEALKIAIYLNDRYELDGRDPSGYVGIAWSIGGV 409
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
HD+ WKER +FGK+RYM+ G + KFDV YI ++ +
Sbjct: 410 HDRAWKEREIFGKVRYMSLRGARSKFDVGSYIERIESL 447
>gi|688103|gb|AAB32328.1| photorepair gene [Drosophila melanogaster]
Length = 536
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/468 (49%), Positives = 305/468 (65%), Gaps = 14/468 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 79 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 138
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 139 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 197
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 198 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 257
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 258 PVVRHPHGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 312
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA-IDTFLEELIV 310
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R +A D F EE IV
Sbjct: 313 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGGQHKASADAFCEETIV 371
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RRELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++Q
Sbjct: 372 RRELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQ 431
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+++V GKMHGF+RMYW +KILEWT PE+AL AI LNDKY +DGRDPNGYVGCMWSI
Sbjct: 432 LQLVREGKMHGFLRMYWPQKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIG 491
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
GVHD GWKER +FGK+RYMNY GC+RKFDV+ A+V R G K++
Sbjct: 492 GVHDMGWKERAIFGKVRYMNYQGCRRKFDVN---AFVMRYGGKVHKKK 536
>gi|195401525|ref|XP_002059363.1| GJ17708 [Drosophila virilis]
gi|194142369|gb|EDW58775.1| GJ17708 [Drosophila virilis]
Length = 530
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/457 (48%), Positives = 296/457 (64%), Gaps = 9/457 (1%)
Query: 10 AVQPGRIRVLKQGS--LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
A + R+RVL S ++ +G V+YWM RD RV+DNWAL+ A A K +P+ V F L
Sbjct: 68 AFKKKRVRVLSTVSDVKEQSKGGVLYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCL 127
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A R FML GL+ +++ E I F L G A + +P FV ++ D
Sbjct: 128 VPKFLNATLRHYKFMLGGLQEVEQQCHE-LNISFQLLLGPAAERLPEFVTAEDIGAVICD 186
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F+PLR R+ + + V + +VDAHN+VP+WV SEK EY+A+T+R KIN L E+
Sbjct: 187 FAPLRLPRQWVADVVKALPGHVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLGEF 246
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
L ++P + + ++S DW + A +L V + W + G A L
Sbjct: 247 LSEFPPVIRHPHGKGQAKESTDWTAAYA-LLSCDKTVDAVDWAKPGYTAGCRQLYE---- 301
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F T+RL+++ RN+P ALSGLSP+LHFGQISAQRC LE ++ + + D F EE
Sbjct: 302 FCTRRLRHFNEKRNDP-TADALSGLSPWLHFGQISAQRCILEVQRYSAMHKASADAFCEE 360
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
IVRRELADNFC+Y +YDSLKG +WA ++L+ H DKR YT E+ E+A+T D LWN
Sbjct: 361 AIVRRELADNFCYYNEHYDSLKGLHDWAYQTLQAHRKDKRSPCYTLEELEQARTYDDLWN 420
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
++Q+++V GKMHGF+RMYWAKKILEWT PE AL +I LNDKY +DGRDPNGYVGCMW
Sbjct: 421 SAQLQLVKEGKMHGFLRMYWAKKILEWTETPELALEYSILLNDKYSLDGRDPNGYVGCMW 480
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
SI GVHDQGWKER +FGKIRYMNY GCKRKFD++ ++
Sbjct: 481 SIGGVHDQGWKERDIFGKIRYMNYQGCKRKFDINAFV 517
>gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
13031]
gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
13031]
Length = 450
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/455 (50%), Positives = 293/455 (64%), Gaps = 14/455 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RI +L + GPV+YWM RDQRVR NWAL+ A +A + P+ V F L
Sbjct: 2 IDPRRITLL--NNCRDASGPVIYWMSRDQRVRHNWALLFARKKAEQLQQPLKVVFTLAPS 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A R FML+GL ++R + I F+L QGE E +P F RE A +VTDFSP
Sbjct: 60 FLNAPLRHYDFMLKGLHEVERALRR-LNIPFYLVQGEPEIELPRFAREMKAGAVVTDFSP 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ R K ++ + + ++EVDAHN+VP +AS K EY+A+T R KI LL E L
Sbjct: 119 LKISREWKRRVGAHLP--LPLYEVDAHNIVPCRIASAKQEYAARTFRPKIKSLLGELLTG 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P LE P+E T +DW SI + L+ V + W + GE+AA L D FL
Sbjct: 177 FPQLE-PLEA-TTESHPVDWSSI-SCSLKADHRVAPVEWLKPGEEAAANCL----DTFLE 229
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
KRL +Y RN+P LS LSPYLHFGQISAQ AL ++R + E+ FLEELIV
Sbjct: 230 KRLSSYAELRNDP-NSGVLSNLSPYLHFGQISAQYIALRVSESR-MPDESRSAFLEELIV 287
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL+DN+CFY YDS G+ WA++SL +H +D RE++YT ++F A+T D LWNA+Q
Sbjct: 288 RRELSDNYCFYNDRYDSFDGSPTWAKESLMNHRNDHREYLYTADEFATAKTHDRLWNAAQ 347
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+E+V GK+HG+MRMYWAKKILEW+ E+A A+ LND+Y +DGRDPNGY G WSI
Sbjct: 348 LELVTTGKIHGYMRMYWAKKILEWSESAEQAFETAMALNDRYALDGRDPNGYAGVAWSIG 407
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
GVHD+ W ERPV+GKIRYMN SGC RKFDV YIA
Sbjct: 408 GVHDRPWFERPVYGKIRYMNASGCARKFDVARYIA 442
>gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
12809]
gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
12809]
Length = 446
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/443 (49%), Positives = 292/443 (65%), Gaps = 15/443 (3%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPV+YWM RDQRVRDNWALI A++ A P+AV F L + A+ + FM+ GL
Sbjct: 19 GPVIYWMNRDQRVRDNWALIKAMELAESRQSPMAVVFCLIPDYPSARNQHFRFMMEGLCE 78
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ +E +I FF+ G D + F+R+ GA +VTDFSPL+ R+ K ++ ++
Sbjct: 79 IDLELE-YLKIPFFMISGNPVDELSKFIRQVGAGAVVTDFSPLKFNRKMKLELAEVIN-- 135
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
V + EVDAHN+VP +AS K E++A+T+R KIN LL ++L+++P L+Q KW G I
Sbjct: 136 VPLIEVDAHNIVPCRIASHKEEFAARTIRPKINGLLSQFLVEFPKLKQQRYKWKGHTAHI 195
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
DW+ +I + P +G AA E L F+T L Y RN+P
Sbjct: 196 DWERVINSFGIPNNFYP------AGIRAADEALHN----FVTGSLNGYNIKRNDPTIDHQ 245
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
S LSPYLHFG ISAQRCAL+A +A E I F EEL+VRRELA+N+CFY +YDS+
Sbjct: 246 -SNLSPYLHFGNISAQRCALDAGEAF-WADEDIRAFKEELVVRRELAENYCFYNDHYDSV 303
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
+GA WA+K++++H D RE+IY ++FE+A+T DPLWNA+Q EM GKMHG+MRMYWA
Sbjct: 304 EGAHSWAKKTIEEHRDDSREYIYGYDEFEQAKTHDPLWNAAQKEMAIKGKMHGYMRMYWA 363
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
KK+LEWT E A A+ LND+Y +DGRDPNGY G WS+CGVHD+ W ERPVFGKIRY
Sbjct: 364 KKMLEWTPDVETAFETALSLNDRYSLDGRDPNGYTGVAWSVCGVHDRAWFERPVFGKIRY 423
Query: 449 MNYSGCKRKFDVDGYIAYVKRIV 471
MN++GCK KF V+ YI V++++
Sbjct: 424 MNFNGCKSKFKVNKYITSVEQLL 446
>gi|449268368|gb|EMC79236.1| Deoxyribodipyrimidine photo-lyase, partial [Columba livia]
Length = 436
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/432 (50%), Positives = 283/432 (65%), Gaps = 18/432 (4%)
Query: 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFF 102
DNWA ++A A K +P+ V F L +FL A R FML+GL+ + E I F
Sbjct: 1 DNWAFLYAQRLALKQELPLHVCFCLVPKFLDATIRHYDFMLKGLQEVTEECAE-LNIPFH 59
Query: 103 LFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPV 162
L G +D +P FV E G LVTDFSPLR R+ + I R+ + V +VDAHN+VP
Sbjct: 60 LLLGYPKDVLPAFVVEHGVGGLVTDFSPLRLPRQWVEDIRERLPEDVPFAQVDAHNIVPC 119
Query: 163 WVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
WVAS K EYSA T RGKIN LPE++ ++P + + + I W++ ++ L+
Sbjct: 120 WVASPKQEYSAWTFRGKINSQLPEFITEFPPVICHPYPPSCPAEPIAWEACYSS-LQVDR 178
Query: 223 EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
V E+ W G A + VL+ F+ +RLK + + RNNP K ALS LSP+ HFGQ+S
Sbjct: 179 TVKEVEWATPGTAAGLAVLQS----FIAERLKYFGSHRNNPNK-EALSNLSPWFHFGQVS 233
Query: 283 AQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH 342
QR LE +K R E++D F+EE +VRRELA+NFC+Y NYDS++GA++WA+ +LK H
Sbjct: 234 TQRAILEVQKQRGKYKESVDVFVEEAVVRRELAENFCYYNENYDSVQGAYDWAQTTLKLH 293
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEAL 402
A DKR +Y ++ E+ T DPLWNA+Q++MV GKMHGF+RMYWAKKILEWT PEEAL
Sbjct: 294 AEDKRPFLYKLQELEQGTTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKILEWTRSPEEAL 353
Query: 403 AIAIYLNDKYEIDGRDPNGYV-----------GCMWSICGVHDQGWKERPVFGKIRYMNY 451
AIYLND+YE+DGRDPNGYV GC+WSICG+HD GW ER VFGKIRYMNY
Sbjct: 354 QFAIYLNDRYELDGRDPNGYVGKLQEGSTGWGGCLWSICGIHDHGWTERAVFGKIRYMNY 413
Query: 452 SGCKRKFDVDGY 463
+GCKRKFDV +
Sbjct: 414 AGCKRKFDVGQF 425
>gi|383862709|ref|XP_003706826.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Megachile
rotundata]
Length = 477
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/450 (46%), Positives = 291/450 (64%), Gaps = 7/450 (1%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R+L + + K ++YWMFRD RV+DNWAL+ A A KNNVP+ + F + FL A
Sbjct: 25 RVRLLSELNDVKDCKGILYWMFRDIRVQDNWALLFAQRTALKNNVPLHICFCIMPSFLYA 84
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R F+L+GL ++ + I F L GE +I FV+ ++ DF+PLR
Sbjct: 85 SIRYYKFLLKGLMKVEEECK-NLNINFHLLNGEPNMSILKFVKAHRMGAVIADFNPLRLP 143
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ + + + + +VDAHN+VP W+AS K EY+A+T+R KIN L E+L ++P +
Sbjct: 144 MSWINDLQKDLPEYIPFCQVDAHNIVPCWIASSKQEYAARTIRSKINTKLEEFLTEFPPV 203
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
+ K + +W+ + + V EI W + G + ++ L + FL +K
Sbjct: 204 IKHPHKIKSKIEGNNWEKALQNI-SVDMSVDEITWAKPGYEYGVKAL----ENFLQNGIK 258
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
Y T+RN+PL ALS LSP+ HFG IS QRC LE + +K+ P+++++F+EE I+RREL
Sbjct: 259 KYATERNDPL-ANALSNLSPWFHFGMISVQRCILEITEYKKIHPKSVESFMEEAIIRREL 317
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
+DNFCFY YD ++GA+ W ++L H DKR+++Y+ +Q E ++T D LWNA Q +MV
Sbjct: 318 SDNFCFYNKKYDLIEGAYPWTIETLDKHRKDKRKYLYSLDQLENSETHDDLWNACQNQMV 377
Query: 375 YNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
GKMHGF+RMYWAKKILEWT PE AL AIYLN+KY IDG DPNGYVGCMWSICG+HD
Sbjct: 378 MIGKMHGFLRMYWAKKILEWTESPESALQWAIYLNNKYSIDGCDPNGYVGCMWSICGIHD 437
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
QGW ER +FGKIRYMNY GCKRKFDV +I
Sbjct: 438 QGWSERQIFGKIRYMNYEGCKRKFDVKEFI 467
>gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi]
gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi]
Length = 530
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/457 (48%), Positives = 297/457 (64%), Gaps = 9/457 (1%)
Query: 10 AVQPGRIRVLKQGSLDKK--RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
A + R+ VL + K+ +G VVYWM RD RV+DNWAL+ A A K +P++V F L
Sbjct: 68 AFRKRRVHVLSNAADVKEQCKGGVVYWMSRDARVQDNWALLFAQRLALKLELPLSVVFCL 127
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A R FML GL+ +++ + I F L G A + +P FV +V D
Sbjct: 128 VPKFLNATLRHYMFMLGGLQEVEQQCRD-LNISFQLLLGPAVERLPAFVVAEEIGAVVCD 186
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F+PLR R+ + + +V + +VDAHN+VP+WV SEK EY+A+T+R KIN L EY
Sbjct: 187 FAPLRLPRQWVTDVVKALPRNVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLSEY 246
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
L ++P + + + +DW + A+L V + W + G A L
Sbjct: 247 LTEFPPVIKHPHGNGQKDKPVDW-AAAEALLTCDRSVDVVDWAKPGYTAGSRQLYE---- 301
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F T+RL+ + RN+P ALSGLSP+LHFGQISAQRCALE ++ + + D F EE
Sbjct: 302 FCTRRLRYFDEKRNDPTAD-ALSGLSPWLHFGQISAQRCALEVQRYTSMHKASADAFCEE 360
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
IVRRELADNFC+Y +YDSLKG +WA ++L++H +D+R Y+ E+ E+++T D LWN
Sbjct: 361 AIVRRELADNFCYYNEHYDSLKGLHDWAYQTLQEHRTDERNPCYSLEELEQSRTYDDLWN 420
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
++Q+++V GKMHGF+RMYWAKKILEWT PE AL I LNDKY +DGRDPNGYVGCMW
Sbjct: 421 SAQLQLVKEGKMHGFLRMYWAKKILEWTATPELALEYCILLNDKYSLDGRDPNGYVGCMW 480
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
SI G+HDQGW+ER +FGKIR+MNY GCKRKFDV+ Y+
Sbjct: 481 SIGGLHDQGWRERAIFGKIRFMNYQGCKRKFDVNAYV 517
>gi|390345301|ref|XP_003726308.1| PREDICTED: LOW QUALITY PROTEIN: deoxyribodipyrimidine
photo-lyase-like [Strongylocentrotus purpuratus]
Length = 501
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/439 (49%), Positives = 285/439 (64%), Gaps = 19/439 (4%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+VYWM RDQRV+DNWAL+ A A K VP+ V F L +FL R F+L GL+
Sbjct: 79 IVYWMSRDQRVQDNWALLFAQRLAMKQEVPLHVCFCLVPKFLEGTIRHFNFVLEGLK--- 135
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
E Q+ F + C + L++ F ++ + K+K + D
Sbjct: 136 ----EVSQVSSIFFSPGFSXAVICSSNIC-SRLVMCMF--IQHLDSXKNKQFLKKED--- 185
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
I EVDAHNVVP W AS KLEY A+T+R KI K L YL ++P + +K + IDW
Sbjct: 186 IAEVDAHNVVPCWEASNKLEYGARTIRPKITKQLSTYLTEFPPVICHPQKAKAKAEPIDW 245
Query: 211 DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
+ A+ L V + W + G M++L D F+ +RL+ + + RN+P K S
Sbjct: 246 EGAYAS-LEVDQTVKPVDWAKPGTSEGMKML----DSFVKERLRYFSSARNDPTKS-VCS 299
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
LSP++HFGQ+S+QR AL R R E++ F+EE I+RREL+DNFCFY YDS++G
Sbjct: 300 NLSPWIHFGQLSSQRAALIVRLYRSRFSESVAAFIEESIIRRELSDNFCFYNDKYDSIEG 359
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390
+WA+K+LKDHA DKR+++Y++E E+A+T D LWN++Q +MV GKMHGF+RMYWAKK
Sbjct: 360 TNDWAKKTLKDHAKDKRDYVYSRETLERAKTYDQLWNSAQKQMVREGKMHGFLRMYWAKK 419
Query: 391 ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMN 450
ILEWTT PEEAL IAIYLND+Y +DGRDPNGYVGCMWSICG+HDQGW ERPVFGKIR+MN
Sbjct: 420 ILEWTTSPEEALEIAIYLNDRYSLDGRDPNGYVGCMWSICGIHDQGWGERPVFGKIRFMN 479
Query: 451 YSGCKRKFDVDGYIAYVKR 469
Y GCKRKFDVD ++ K+
Sbjct: 480 YKGCKRKFDVDTFVNRYKK 498
>gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus]
gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus]
Length = 472
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/439 (46%), Positives = 283/439 (64%), Gaps = 20/439 (4%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM RDQR++DNWALI+A A +P+ + F + F +R F+L GL+ +
Sbjct: 30 VLYWMVRDQRIQDNWALIYAQRIALHLKIPLRICFCIVPGFHTTTSRHFSFLLDGLKEIA 89
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ I F G IP+ +++ +++TDF PLR + ++ + + D V
Sbjct: 90 EECIK-LSIGFNAVYGLPNVLIPSIIKKYKVGVVITDFFPLRVPEKLIKQVTSVLPDKVV 148
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ----PIEKWTGTRQ 206
+VDAHN+VP W AS K EY A+TLR KIN +L YL ++P++ + P +
Sbjct: 149 FIQVDAHNIVPCWEASHKQEYGARTLRKKINGMLDTYLTEFPVITKHPYGPFSVSIANNK 208
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+++D + V W G AA +VL D FL RL Y +D NNP
Sbjct: 209 GVEFDDTVHPV----------SWAVPGSKAAFKVL----DDFLKNRLAAYESDHNNP-TC 253
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
ALS LSP+LHFG ISAQR LE K + + P+++ FL+E+I+RRELADNFC+Y YD
Sbjct: 254 EALSNLSPWLHFGHISAQRVVLETLKYKSIHPKSVSVFLDEIIIRRELADNFCYYNKRYD 313
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
S++ WAR++L+ H +D+R++IY+ +Q E+A+T DPLWN++Q++MV GKMH F+RMY
Sbjct: 314 SIESTHSWARETLEAHVNDRRKYIYSLKQLERAETHDPLWNSAQIQMVRLGKMHSFLRMY 373
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
WAKKILEWT P+EAL +IYLNDKYE+DG DPNGYVGCMWSICG+HD+ W ERP+FGK+
Sbjct: 374 WAKKILEWTRSPKEALRYSIYLNDKYELDGTDPNGYVGCMWSICGLHDRAWSERPIFGKV 433
Query: 447 RYMNYSGCKRKFDVDGYIA 465
RYMNY G K+KFDV+ +I+
Sbjct: 434 RYMNYEGTKKKFDVNAFIS 452
>gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeobacteroides DSM 266]
gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeobacteroides DSM 266]
Length = 468
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/456 (48%), Positives = 290/456 (63%), Gaps = 15/456 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P R RVL S K G V+YWM RDQR+ NWAL+ A ++A + P+ V F L
Sbjct: 15 IDPRRTRVL--NSCSDKPGAVIYWMSRDQRLNHNWALLFAREKAARKGQPLVVVFALAPS 72
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A R FML+GL + +E I F L +GE + I + + A +VTDFSP
Sbjct: 73 FLDAPFRHYDFMLKGLEETSKALER-INIPFMLLEGEPDTEISRYACQSEAGAVVTDFSP 131
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L R K K + + + ++EVDAHN+VP W AS+K EY+A+TLR K+ L E+L+
Sbjct: 132 LNISRNWKKKAADIL--DIPLYEVDAHNIVPCWYASDKQEYAARTLRPKLQARLDEFLVP 189
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P + P+ +S DW + L+K VP + GE AA E L + F+
Sbjct: 190 FPTI-LPLPAPHVHHRSPDWKQ-VRERLQKDRSVPPVNRIAPGETAAAESL----ENFIK 243
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT-FLEELI 309
RL Y T RN+P ALS LSPYLHFGQISAQ AL ++R P+ T FLEELI
Sbjct: 244 SRLSGYATARNDP-NSNALSQLSPYLHFGQISAQHVALRVAESR--APQKDKTAFLEELI 300
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
+RREL+DNFC Y P+YD +G WA+++L H DKRE++YT + FEKA T D LWNA+
Sbjct: 301 IRRELSDNFCNYNPSYDRFEGIPAWAKQTLLLHGQDKREYLYTIDVFEKAATHDKLWNAA 360
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q E+V +GK+HG+MRMYWAKKILEW++ P EA +AIYLND+Y +DGRDPNGY G WSI
Sbjct: 361 QSELVQSGKIHGYMRMYWAKKILEWSSSPPEAFEMAIYLNDRYALDGRDPNGYAGVAWSI 420
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G+HD+ W ERPV+G IRYMN SGC+RKFDV+ YI+
Sbjct: 421 GGLHDRPWFERPVYGNIRYMNASGCRRKFDVERYIS 456
>gi|9634828|ref|NP_039121.1| Photolyase [Fowlpox virus]
gi|7271656|gb|AAF44502.1|AF198100_149 ORF FPV158 Photolyase [Fowlpox virus]
gi|8926140|gb|AAF81696.1|AF246697_1 CPD-photolyase [Fowlpox virus]
Length = 464
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/445 (47%), Positives = 287/445 (64%), Gaps = 20/445 (4%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML 83
++K V+YWMFRDQRV+DNWALI+A A K +P+ + F + +F +R F++
Sbjct: 32 INKNSKVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKFHTTTSRHFMFLI 91
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
GL+ + + I F L G + IP V++ +++TDF PLR R +
Sbjct: 92 SGLKEVAEECKR-LCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTVI 150
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ----PIE 199
+ D++ +VDAHN+VP W AS+K EY A+TLR KI L EY+ ++P++ + P
Sbjct: 151 SLPDNIPFIQVDAHNIVPCWEASDKEEYGARTLRKKIFDKLYEYMTEFPVVRKHPYGPFS 210
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
++I D + V W G A + VLK F+ RL +Y D
Sbjct: 211 ISIAKPKNISLDKTVLPV----------KWATPGTKAGIIVLKE----FIKNRLPSYDAD 256
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
NNP ALS LSP+LHFG +SAQR ALE K + + ++TF++E+IVRREL+DNFC
Sbjct: 257 HNNP-TCDALSNLSPWLHFGHVSAQRVALEVLKCIRESKKNVETFIDEIIVRRELSDNFC 315
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+Y +YDS++ WARK+L+DH +D R++IY+ +Q EKA+T DPLWNASQM+MV GKM
Sbjct: 316 YYNKHYDSIQSTHSWARKTLEDHINDPRKYIYSIKQLEKAETHDPLWNASQMQMVREGKM 375
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
H F+RMYWAKKILEWT PE+AL+ +IYLN+KYE+DG DPNGYVGCMWSICG+HD+ WKE
Sbjct: 376 HSFLRMYWAKKILEWTRTPEDALSYSIYLNNKYELDGTDPNGYVGCMWSICGLHDRAWKE 435
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYI 464
RP+FGKIRYMNY K+KFDV +I
Sbjct: 436 RPIFGKIRYMNYESSKKKFDVAVFI 460
>gi|21673346|ref|NP_661411.1| DNA deoxyribodipyrimidine photolyase, class II [Chlorobium tepidum
TLS]
gi|21646440|gb|AAM71753.1| DNA deoxyribodipyrimidine photolyase, classII [Chlorobium tepidum
TLS]
Length = 459
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/449 (47%), Positives = 290/449 (64%), Gaps = 11/449 (2%)
Query: 17 RVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA 76
R+L+ + ++GPV+YWM RDQRVR NWAL+ A +AN+ P+ V F L FLGA
Sbjct: 11 RILRLNQREDRQGPVIYWMSRDQRVRHNWALLFACQKANQLGQPLEVVFTLSPSFLGAPM 70
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRR 136
R FM RGLR ++ + E + F + GE + +P + + A ++V DFSPL+ +R
Sbjct: 71 RHYDFMFRGLREVETRLRE-LGVPFTVLYGEPGETLPKYTEKRNAGVVVADFSPLKLVRG 129
Query: 137 CKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
K + ++S +EVDAHN+VP W+AS K EY+A+T+R K+N L E+L +P E
Sbjct: 130 WKLAVAQQLS--CAFYEVDAHNIVPCWLASPKQEYAARTIRPKLNALQGEFLTGFPEPEL 187
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
+ T + W+++ +L+ + + E GE AA L+ F+T RL Y
Sbjct: 188 RHQPDT-LPPPVQWNAM-ETLLKVDRSIKAVPGLEPGETAAEARLRS----FVTGRLSRY 241
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
+RN+P A+SGLSPYLHFGQ+SAQ EA ++ K + F+EEL +RREL++
Sbjct: 242 ADERNDP-NSGAVSGLSPYLHFGQLSAQHATFEAARS-KASEVNREAFVEELFIRRELSE 299
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
N+C+Y YDS G EWA+K+L +HA D R+ IYT EQFE+AQT DPLWNA+Q +++
Sbjct: 300 NYCYYNERYDSFDGIPEWAKKTLMEHAGDHRDAIYTPEQFERAQTHDPLWNAAQTQLLET 359
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
G +HG+MRMYWAKKILEW+ P A IA+ LND+Y +DGRDPNGYVG WSI G+HD+
Sbjct: 360 GIIHGYMRMYWAKKILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIGGLHDRP 419
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
W ERPV+G IRYMN +GCKRKFDV YIA
Sbjct: 420 WTERPVYGTIRYMNSNGCKRKFDVPRYIA 448
>gi|193213030|ref|YP_001998983.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
gi|193086507|gb|ACF11783.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
Length = 459
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/455 (48%), Positives = 291/455 (63%), Gaps = 21/455 (4%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q ++ + G V+YWM RDQRVR NWAL+ A +AN+ P+ V F L FLGA
Sbjct: 11 RVRHLNQ--IEDQHGTVIYWMSRDQRVRHNWALLFASQKANQLGQPLEVVFTLAPGFLGA 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R FM RGLR ++ + E +LF GE +P + A LV DFSPL+ +
Sbjct: 69 PMRHYDFMFRGLREVETRLRE-LGVLFTALYGEPGKTLPEYAASRNAGALVADFSPLKLV 127
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-- 192
R K ++ +S T +EVDAHN+VP W+AS K EY+A+T+R K+N L E+L D+P
Sbjct: 128 RDWKQEVAPGLS--CTFYEVDAHNIVPCWLASPKQEYAARTIRPKLNTLREEFLTDFPEP 185
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+ QP + ++WD + +L+ V + E GE AA L+ DG
Sbjct: 186 ELQHQPDK----LPPPVEWDEM-ETLLKVDRSVKAVPALEPGEAAAELHLRDFVDG---- 236
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEELIV 310
RL Y +RN+P A+SGLSPYLHFGQ+SAQ A EA AR EA + F+EEL +
Sbjct: 237 RLSRYADERNDP-NSGAVSGLSPYLHFGQLSAQHAAFEA--ARSKASEANREAFVEELFI 293
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL++N+C+Y YDS G EWA+K+L +H D+R+ IYT EQFE+AQT DPLWNA+Q
Sbjct: 294 RRELSENYCYYNERYDSFDGIPEWAKKTLLEHTGDRRDAIYTPEQFEQAQTHDPLWNAAQ 353
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+++ G +HG+MRMYWAKKILEW+ P A IA+ LND+Y +DGRDPNGYVG WSI
Sbjct: 354 TQLLETGVIHGYMRMYWAKKILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIG 413
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G+HD+ W ERP++G IRYMN +GCKRKFDV YIA
Sbjct: 414 GLHDRPWVERPIYGTIRYMNANGCKRKFDVPRYIA 448
>gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans]
Length = 510
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/457 (45%), Positives = 300/457 (65%), Gaps = 16/457 (3%)
Query: 15 RIRVLKQGSLDKK---RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
R+R+L + + + +GPVVYWM+RDQRV+DNWA ++A A K +P+ V F L ++
Sbjct: 54 RVRILTENQCEVREDCQGPVVYWMYRDQRVQDNWAFLYAQRLALKLELPLCVCFCLLPKY 113
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
+ R FML GL + E+ + F L +G A ++ F+++ A+ +V DFSPL
Sbjct: 114 IHTTLRHYKFMLTGLEEVSEECED-LNVSFHLLKGPAHQSLVEFLKDVDAATVVCDFSPL 172
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + ++I + ++ ++DAHNVVPVW AS+K EY+A+T+R KIN L EYL ++
Sbjct: 173 RLPLQWLEEIKEVLPTTIPFIQIDAHNVVPVWFASQKQEYAARTIRNKINSQLEEYLTEF 232
Query: 192 PMLEQPIEKWTGTRQS--IDWDSIIAAVLRKGAEVPEIGWCESG-EDAAMEVLKGSKDGF 248
P L + K+ + S ++W S+ L+ V E+ + G ++A ++L+ F
Sbjct: 233 PPLIR--HKYPNRKPSTKVNWKSVYNT-LKCLKTVDEVASVKPGYKNACHQLLE-----F 284
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
RLK + RN+P ALSGLSP+ +FGQIS QRC LE + +++ F EE
Sbjct: 285 CQNRLKLFHDKRNDP-NIDALSGLSPWFNFGQISIQRCILEIKTYEHKFKDSVAAFCEEA 343
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
IVRRELADNFCFY NYD+ +G +W+RK+L +H D+R Y+ E+FE+A+T D LWN+
Sbjct: 344 IVRRELADNFCFYNQNYDNFQGLQDWSRKTLNEHRKDERSPCYSLEEFEQARTHDDLWNS 403
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+Q++++ GKMHGF+RMYWAKKILEW+ PE+AL ++ LND+Y +DG DPNGYVGCMWS
Sbjct: 404 AQLQLMREGKMHGFLRMYWAKKILEWSKSPEDALEFSLLLNDRYSLDGTDPNGYVGCMWS 463
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
I G+HDQGW ER +FGKIRYMNY GCKRKFDV ++A
Sbjct: 464 IGGIHDQGWAERKIFGKIRYMNYQGCKRKFDVTAFVA 500
>gi|145353298|ref|XP_001420955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357465|ref|XP_001422939.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581191|gb|ABO99248.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583183|gb|ABP01298.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 477
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/455 (48%), Positives = 290/455 (63%), Gaps = 9/455 (1%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRG 85
GPVVYW RD+R +N AL A++ AN+ VP+ VA ++ G+ AR+ F L+G
Sbjct: 26 GPVVYWCDRDRRCANNDALGRAMELANERRVPLVVAMHVGTDLSGSGIGGARRAVFALKG 85
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV 145
L+ L ++ + I AS +V DFSPLRE R ++ + V
Sbjct: 86 LKELDEDLRARGVSTRTTTGSDVAGGIVETCETLNASAVVCDFSPLREGRAAREAVARVV 145
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-T 204
V + EVDAHNVVP WV S+K EY+A+T+R KI++ L ++L L+ I T
Sbjct: 146 E--VPVIEVDAHNVVPAWVTSDKQEYAARTIRPKIHRNLGDFLTAPQALDDLIAAPDALT 203
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME-VLKGSKDGFLTKRLKNYPTDRNNP 263
DWD++I KGA VPE+ W + GE AA+ +L + D FL +RL Y +RN P
Sbjct: 204 PSETDWDALIDTARVKGAHVPEVDWIKPGERAALAALLDPNVDSFLPQRLTLY-GERNKP 262
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRELADNFCFYQ 322
PRA+S LSPYL+ GQ+S +R A EA + R + EAID++LEELIVRREL+DN+C +
Sbjct: 263 TSPRAVSRLSPYLNHGQLSPRRAAWEAAQLRGIVDDEAIDSYLEELIVRRELSDNYCLFN 322
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P YDSL+GA +WA+ SL HA D RE++Y + E+ T D LWNA+Q E+ + G+MHGF
Sbjct: 323 PYYDSLQGASQWAQDSLSLHARDVREYVYDYKTLERGNTHDELWNAAQKELYHLGRMHGF 382
Query: 383 MRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPV 442
MRMYWAKKILEWT PE AL AI LND Y +DG DPNGYVGCMWSI GVHDQGWKER V
Sbjct: 383 MRMYWAKKILEWTPSPEVALQTAIQLNDAYALDGLDPNGYVGCMWSIAGVHDQGWKERAV 442
Query: 443 FGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
FGK+RYMNY+GCKRKF + Y+A V + G ++
Sbjct: 443 FGKVRYMNYAGCKRKFQIQDYVAAVDAEISGIGRK 477
>gi|330506500|ref|YP_004382928.1| deoxyribodipyrimidine photo-lyase [Methanosaeta concilii GP6]
gi|328927308|gb|AEB67110.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
concilii GP6]
Length = 445
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/454 (48%), Positives = 297/454 (65%), Gaps = 17/454 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P R RVL +++G V YWM R+QRV DNW L+ A + A + P+AV F + Q
Sbjct: 3 VNPKRARVLVWAK--ERKGAVFYWMSREQRVADNWPLLFAQELAIREKSPLAVLFCISPQ 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A + Q FML+GL ++ ++ E I +L G+ IP F++ A +LV+DFSP
Sbjct: 61 FLEATSSQYKFMLKGLEEVETDLAE-LNIPLYLLSGDPAKEIPQFLQSHEAGILVSDFSP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + I V+ + +EVD HN+VP W AS K E++A + R KI++LL EYL D
Sbjct: 120 LRIKMIWQRSIAKEVN--IPCYEVDGHNIVPCWQASLKQEWAAYSFRPKIHRLLDEYLTD 177
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P L+ W +++D D A + + + ++ W + GE AA + L + F+
Sbjct: 178 FPALKAHPFPWP---EAVDNDWRGAEMAIRADHISDMSWAQPGERAAKKHL----NEFID 230
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+ L Y +DRNNP+K SGLS YLHFGQISAQR AL A FLEEL+V
Sbjct: 231 QGLVLYDSDRNNPVK-NGQSGLSFYLHFGQISAQRVALMALSGMTDS----SPFLEELVV 285
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RRELADNFC+Y P+YDS++G WA+++L+ H +D RE++Y+ ++ E+A+T D LWNA+Q
Sbjct: 286 RRELADNFCYYNPHYDSVQGFPNWAQETLRQHENDPREYLYSIKELEEAKTNDELWNAAQ 345
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
EMV GKMHG+MRMYWAKKILEWT+ P EA+ IAIYLN++YE+DGRDPNGY G WSI
Sbjct: 346 TEMVCRGKMHGYMRMYWAKKILEWTSSPAEAMDIAIYLNNRYELDGRDPNGYTGIAWSIG 405
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
GVHD+ WKERP+FGK+RYM+Y+G K KFD+ YI
Sbjct: 406 GVHDRAWKERPIFGKVRYMSYNGAKTKFDIKAYI 439
>gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
Length = 453
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/456 (47%), Positives = 278/456 (60%), Gaps = 13/456 (2%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P RIR L + G VVYWM RDQR DNWAL+HA A ++ P+ V F L
Sbjct: 3 VHPARIRSL--AGPPPRSGSVVYWMSRDQRAADNWALLHAASLAGESGAPLVVVFALAPA 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ GA RQ FML GL + + I + GE +P F+ A + VTDF P
Sbjct: 61 YPGATRRQYAFMLAGLAETEAALR-AHSIPLAVLTGEPGFTVPAFLHSVDAGVCVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R K + V+ + EVDAHNV P ++AS+K EY+A TLR KI++LLPE+L
Sbjct: 120 LRVKRVWKAAVA--VASPGALVEVDAHNVAPCFLASQKREYAAATLRPKIHRLLPEFLKP 177
Query: 191 YPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P L P G +DW + A ++ VP + G AA +VL D FL
Sbjct: 178 FPDLPTFPAANLDGF-APVDWRAA-ADFVQADPSVPPVTGIVPGSAAATQVL----DDFL 231
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
RL+ Y RN+P A SGLSPY HFGQ++ QR AL +AR E D FLEEL+
Sbjct: 232 RDRLEGYAARRNDP-NAGATSGLSPYFHFGQLAPQRAALATLEARSRAKEGADAFLEELV 290
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRRELADNFC Y+P YDS + EWARK+L HA+D R ++Y +E F A T LWNA+
Sbjct: 291 VRRELADNFCLYEPEYDSFEALPEWARKTLAAHAADSRPYLYDRETFAAATTHSALWNAA 350
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q ++ G++HG+MRMYWAKKILEW+ P EAL A++LND++ +DGRDPNG VG +WS+
Sbjct: 351 QRQLSREGRIHGYMRMYWAKKILEWSGSPREALETALFLNDRFALDGRDPNGVVGVLWSV 410
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G+HD+ W RPV+G++RYMN GC+RKFDVD Y+A
Sbjct: 411 GGLHDRPWANRPVYGQVRYMNERGCRRKFDVDAYVA 446
>gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera]
Length = 480
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/437 (47%), Positives = 284/437 (64%), Gaps = 13/437 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWMFRD R++DNWAL+ A A KNNVP+ + F L FL A R F+L+GL ++
Sbjct: 42 ILYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCLISNFLNASIRYYKFLLKGLEEIE 101
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ ++ I F L GE NI F++ ++TDF PL+ D + + +
Sbjct: 102 KECKK-LNINFHLLHGEPNINILKFIKIYNMGAIITDFYPLKLPMLWIDNVKKNLPKDIP 160
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPIEKWTGTRQSID 209
I +VDAHN+VP W AS K E++AKT+R KIN L E+L ++P +++ P T++ +
Sbjct: 161 ICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHP----YTTKEKFE 216
Query: 210 WDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
++ A+ + V EI W + G + ++ L + FL RLK Y +RNNPL
Sbjct: 217 KNNWKIALQNVEVDKSVKEITWAKPGYENGIKEL----ENFLQNRLKKYGDERNNPL-SN 271
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDS 327
A+S LSP+ HFG IS QRC LE ++ +KL +++++F+EE I+R+EL+DNFCFY YD
Sbjct: 272 AISNLSPWFHFGMISVQRCILEIKEYKKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDL 331
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 387
++GA+ WA ++L H DKR++IY E ++T D LWNA Q +MV GKMHGF+RMYW
Sbjct: 332 IEGAYPWAIETLNKHRKDKRKYIYFLNHLENSETHDDLWNACQNQMVTIGKMHGFLRMYW 391
Query: 388 AKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIR 447
AKKILEWT PE AL A YLN+KY IDG DPNGYVGCMWSICGVHD GW ER +FGKIR
Sbjct: 392 AKKILEWTETPEIALKWANYLNNKYSIDGCDPNGYVGCMWSICGVHDHGWPERDIFGKIR 451
Query: 448 YMNYSGCKRKFDVDGYI 464
YMNY GCKRKF++ ++
Sbjct: 452 YMNYEGCKRKFNIAEFV 468
>gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
2638]
gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
2638]
Length = 445
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/456 (46%), Positives = 293/456 (64%), Gaps = 30/456 (6%)
Query: 17 RVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA 76
R+ K S + GP+VYWM R+QRV DNW L+HA + A + VP+ V F L FLGA
Sbjct: 8 RIKKLNSAEISGGPIVYWMSREQRVFDNWGLLHARELAG-DKVPLIVVFCLVPSFLGATL 66
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRR 136
R FML G++ +++++ + F L G+ ++ +P FV A +VTDF PLR ++
Sbjct: 67 RHYDFMLNGMQQVEKDLRK-LGYDFVLLSGQPDETLPAFVSNIRAGAVVTDFDPLRIKQQ 125
Query: 137 CKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
++ + ++ + + EVD HN+VP ++K EY A+T+R KI +LLPE+L ++P L
Sbjct: 126 WQENVGQKID--IPLLEVDGHNIVPARFVTDKREYGARTIRPKIQRLLPEFLEEFPELAS 183
Query: 197 --------PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
P+ W R SI D + V +P GE AA L D F
Sbjct: 184 AEVKGEGFPVVDWKQVRSSIKVDETVGPV----DLIP-------GESAAHAAL----DEF 228
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
+T L Y RN+P A S LS Y HFGQ++ QR ALE A + E++D++LEEL
Sbjct: 229 VTYGLGAYAEKRNDP-NAEATSRLSAYYHFGQLAPQRAALEV--AARPTGESVDSYLEEL 285
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
I+RREL+DNFC + PNYDSL A EWA+K+L +H++D+R ++Y+ E FE+A+T LWNA
Sbjct: 286 IIRRELSDNFCLHTPNYDSLDAAPEWAQKTLSEHSADRRAYLYSYEDFEQARTHSALWNA 345
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+Q +MV++G MHG+MRMYWAKKILEW+ EEAL+I I LND++E+DGRDPNGYVG +WS
Sbjct: 346 AQSQMVHSGFMHGYMRMYWAKKILEWSASAEEALSITIALNDRFELDGRDPNGYVGALWS 405
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
I GVHD+GWK+R VFG IRYMN GC+RKFDVD Y+
Sbjct: 406 IGGVHDRGWKKRSVFGSIRYMNERGCRRKFDVDAYV 441
>gi|326427066|gb|EGD72636.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 512
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/446 (49%), Positives = 282/446 (63%), Gaps = 10/446 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM RDQR +DNWAL++A A VP+ V F+L +FL A R GFMLRGL
Sbjct: 31 VVYWMSRDQRAKDNWALLYARSLARSARVPLVVVFSLVPKFLDATIRHYGFMLRGLHQTA 90
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-EIRRCKDKICNRVSDSV 149
+++ E + F L QG A +P F + A+ ++ D SPLR +R KD + +V
Sbjct: 91 KHLHEKL-VPFHLLQGSAATTVPAFAAQHEAAAVICDMSPLRVPLRWVKDVGQALEAQNV 149
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID 209
+ +VDAHN+VPVWV S+K EY+A+T+R KI+K L YL +P L+ + G +
Sbjct: 150 PLLQVDAHNIVPVWVTSQKQEYAARTIRPKIHKHLDTYLQPFPELDANDKDTLGDMELPP 209
Query: 210 WDSIIAA--VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
+ A +L V E+ W E G + M + + F R K + RNNP
Sbjct: 210 VFDLEAQFDMLEVDTSVKEVDWIEPGYEQGM----AAAEAFGRDRAKKFDELRNNP-NED 264
Query: 268 ALSGLSPYLHFGQISAQRCALE-ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
S LSPY HFGQISA L K K + + TF+EE +VRREL+DNFCFY YD
Sbjct: 265 VCSNLSPYFHFGQISAAAVVLLLKSKYSKKAAKGVQTFIEEAVVRRELSDNFCFYNRRYD 324
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
S+ GA WAR +L H DKRE++YT+EQ E+ +T D LWNA+Q++MV GKMHGF+RMY
Sbjct: 325 SIDGAAVWARDTLDTHRHDKREYVYTREQLEQGKTHDDLWNAAQLQMVERGKMHGFLRMY 384
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
WAKKILEWT PE+AL A++LND+YE+DGRDPNGYVGCMWSI G+HDQGW ER VFGKI
Sbjct: 385 WAKKILEWTATPEDALQTALFLNDRYELDGRDPNGYVGCMWSIAGIHDQGWAERAVFGKI 444
Query: 447 RYMNYSGCKRKFDVDGYIAYVKRIVG 472
RYMNY GCKRKFDV +++ + V
Sbjct: 445 RYMNYKGCKRKFDVARFVSRFPQAVA 470
>gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photolyase [Desulfovibrio alaskensis G20]
gi|78217631|gb|ABB36980.1| deoxyribodipyrimidine photolyase [Desulfovibrio alaskensis G20]
Length = 487
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/445 (48%), Positives = 282/445 (63%), Gaps = 13/445 (2%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
PV+YWM R+ R RDNWAL+HA A P+AV F L QF+ A R FML+GL
Sbjct: 23 APVLYWMHREMRARDNWALLHAQQCAAAGGAPLAVVFCLVPQFIDAGLRHFHFMLQGLEE 82
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRR-CKDKICNRVSD 147
R +EE I FL +G + + F + GAS +VTDF LR R+ + +
Sbjct: 83 TARILEE-LGIPLFLLRGTPPEEVVRFAQAHGASRVVTDFDTLRIKRQWIRSAVEAARQL 141
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
+ + VD+ NVVP AS+K EY+A+T+R KI++LL EYL P L+ W G Q
Sbjct: 142 DIAVDVVDSRNVVPCLRASDKREYAARTIRPKIHRLLDEYLDPLPALQPAAVPWKGAYQR 201
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
DW + + + L+ A V GW GE+AA+ L F+ R+ Y +RNNPL P
Sbjct: 202 PDWQAALDS-LQADASVQPAGWLPPGENAALAELTA----FIRVRMHRYAAERNNPLMP- 255
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCP-----EAIDTFLEELIVRRELADNFCFYQ 322
LS LSPYLHFG +SAQR LE +A+ E F+EEL+VRRELADNFC+Y+
Sbjct: 256 VLSHLSPYLHFGMLSAQRAVLEVMQAQGTAAGGTYGEGAAAFVEELVVRRELADNFCWYE 315
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P+YDS++ +WA K+L H +D+R ++Y ++Q EKA+T DPLWNA+Q EMV GKMHG+
Sbjct: 316 PSYDSVEAFPDWALKTLDRHRADRRPYLYDEQQLEKARTHDPLWNAAQQEMVLTGKMHGY 375
Query: 383 MRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPV 442
MRMYWAKKILEWT PEEAL I I ND++ +DGRD NGY G WS+ GVHD+ W+ER V
Sbjct: 376 MRMYWAKKILEWTESPEEALRIVIRQNDRWSLDGRDSNGYAGAAWSVGGVHDRPWREREV 435
Query: 443 FGKIRYMNYSGCKRKFDVDGYIAYV 467
FG IR+M+Y+G + KFDVDGY+A V
Sbjct: 436 FGTIRFMSYNGARSKFDVDGYVAAV 460
>gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3]
gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
chlorochromatii CaD3]
Length = 459
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/462 (47%), Positives = 294/462 (63%), Gaps = 20/462 (4%)
Query: 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
+ V P R+R+L +D G V+YWM RDQRVR NWAL+ A +A P+ V F L
Sbjct: 4 SPVDPRRVRLLNH-HIDGN-GVVIYWMSRDQRVRHNWALLFARWKAAMLQQPLMVVFTLA 61
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
FLGA R + GL+ ++ + I F + QGE + +P + AS++V D+
Sbjct: 62 PSFLGAPLRHYDVLFNGLQEVETELR-ALNIPFMVLQGEPSEELPRYAMHHNASMVVADY 120
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
SPL R K+++ +S V ++EVDAHN+VP VAS K EY+A+T+R KINKLL E+L
Sbjct: 121 SPLHLTRCWKNQVAEALS--VPLYEVDAHNIVPCRVASPKQEYAARTIRPKINKLLGEFL 178
Query: 189 IDYPMLE---QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
+P LE QP+ T ++W + + A V +GW +GE A L+
Sbjct: 179 TPFPELEALPQPL-----TEPPVNWQKLRSH-FHADASVAPVGWLTAGEAGAHATLQC-- 230
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
F+ ++L Y T RN+P A S LSPYLHFGQIS Q AL+ KA E D FL
Sbjct: 231 --FVQQKLNGYATQRNDP-SLEATSRLSPYLHFGQISTQFVALQV-KAAHAPQEDKDAFL 286
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
EELIVRREL+DN+C Y +YD L G WA+++L HA+D R++IY+ E FE+A+T DPL
Sbjct: 287 EELIVRRELSDNYCHYNASYDRLSGIPAWAQETLARHATDPRDYIYSHEAFEQAKTHDPL 346
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
WNA+Q E++ +G +HG+MRMYWAKKILEW+ PEEA IA++LND+Y +DGR+PNGYVG
Sbjct: 347 WNAAQHELLQSGIIHGYMRMYWAKKILEWSRTPEEAFEIALWLNDRYALDGREPNGYVGV 406
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
WSI GVHD+ W+ERPV+G IRYMN +GC RKFDV YI V
Sbjct: 407 AWSIGGVHDRPWRERPVYGTIRYMNANGCARKFDVKRYIHNV 448
>gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photo-lyase [Geobacter sulfurreducens PCA]
gi|409913272|ref|YP_006891737.1| deoxyribodipyrimidine photo-lyase [Geobacter sulfurreducens KN400]
gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter
sulfurreducens PCA]
gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter
sulfurreducens KN400]
Length = 461
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 227/459 (49%), Positives = 288/459 (62%), Gaps = 15/459 (3%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GRIR L QG + GPV+YWM RDQRV DNWALIHA A + P+ V F L +FLG
Sbjct: 4 GRIRSLLQGG-EATAGPVIYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAPRFLG 62
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A ARQ FML+GL ++ + I FFL G+ + + F R S LVTDF PLR
Sbjct: 63 ATARQYRFMLKGLEQVRAALNR-LDIPFFLVTGDPKGAVAAFTRRHRVSYLVTDFDPLRV 121
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R K ++ +S + EVDAHN+VP W+ S++ E+ A T+R KI++LLP+++ +P
Sbjct: 122 KREWKRQVAGEIS--IPFDEVDAHNIVPCWITSQRQEWGAYTIRPKIHRLLPDFMEPFPP 179
Query: 194 LEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
L++ W G S +W + VPE+ W SGE+AA L FL
Sbjct: 180 LQRHPFPWQGALPSDAEWRETFTG-MTLDESVPEVSWLASGEEAAQAALAR----FLEDG 234
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L Y T RNNP SGLSP+LHFGQ+SAQR A A A E+ D FLEELIVRR
Sbjct: 235 LAGYATRRNNPAV-MGQSGLSPWLHFGQLSAQRVAQAAFAAAAPI-ESRDAFLEELIVRR 292
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
ELADNFC+Y YD G EWA+++L H D R Y + E+ QT D LWNA+Q+E
Sbjct: 293 ELADNFCYYNDAYDRFDGFPEWAQRTLNRHRHDPRPQCYEHDVLEQGQTHDSLWNAAQLE 352
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV G+MHG++RMYWAKK+LEWT+ PE+AL IAI LND+Y++DGRDPNGY G WSI GV
Sbjct: 353 MVRWGRMHGYLRMYWAKKLLEWTSSPEDALMIAIQLNDRYQLDGRDPNGYAGIAWSIGGV 412
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
HD+ W ERPVFG IR+M+ GC+RKFD D AY +R++
Sbjct: 413 HDRPWAERPVFGTIRFMSRDGCRRKFDTD---AYERRVI 448
>gi|194702896|gb|ACF85532.1| unknown [Zea mays]
gi|414868226|tpg|DAA46783.1| TPA: hypothetical protein ZEAMMB73_845202 [Zea mays]
gi|414868227|tpg|DAA46784.1| TPA: hypothetical protein ZEAMMB73_845202 [Zea mays]
Length = 376
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/369 (57%), Positives = 262/369 (71%), Gaps = 12/369 (3%)
Query: 6 PPS--TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN--VPV 61
PP+ + V P R+R+L G GPVVYWM RDQR+ DNWAL+HA + A + P+
Sbjct: 2 PPAIPSLVHPSRVRILHPGG-SHIHGPVVYWMLRDQRLADNWALLHAAELAAASTPAAPL 60
Query: 62 AVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A+AF LF + LGA RQLGF+LRGLR L + F L G AE +P+ VR
Sbjct: 61 AIAFTLFPRPFLLGAHLRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE--LPSLVRRL 118
Query: 120 GASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GAS LV DFSPLR +R D + R + ++ +H+VDAHNVVPVW AS KLEYSAKT
Sbjct: 119 GASALVADFSPLRPVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTF 178
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R K+NK++ EYL++YP + Q +S+DWD++I ++ + VPEI WCE GE +
Sbjct: 179 RSKVNKVINEYLVEYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESS 238
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
AMEVL GSKDGFLTKR+KNY T RN+P KP ALS LSPYLHFG ISAQRCALEA+K R L
Sbjct: 239 AMEVLLGSKDGFLTKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKRRHL 298
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
P+++DTFLEELI+RRELADNFC+YQP YDSL GAWEWARK+L DH DKREHIYT+EQ
Sbjct: 299 SPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQL 358
Query: 357 EKAQTADPL 365
E A+T+DP+
Sbjct: 359 ENAKTSDPV 367
>gi|380029742|ref|XP_003698524.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Apis florea]
Length = 480
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/437 (47%), Positives = 283/437 (64%), Gaps = 13/437 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWMFRD R++DNWAL+ A A KNNVP+ + F + FL A R F+L+GL ++
Sbjct: 42 ILYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCIMSNFLNASIRYYKFLLKGLEEIE 101
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
++ I F L GE +I F++ ++TDF PL+ D + + + V
Sbjct: 102 TECKK-LNINFHLLHGEPNISILKFIKMYNMGAIITDFYPLKLPMLWIDNVKKNLPEDVP 160
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPIEKWTGTRQSID 209
I +VDAHN+VP W AS K E++AKT+R KIN L E+L ++P +++ P T++ +
Sbjct: 161 ICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHPY----TTKEKFE 216
Query: 210 WDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
++ A+ + V EI W + G ++ L + FL RLK Y +RNNPL
Sbjct: 217 KNNWKIALQNVEVDKSVKEITWAKPGYRNGIKEL----ENFLQNRLKKYGDERNNPL-SN 271
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDS 327
A+S LSP+ HFG IS QRC LE ++ +KL +++++F+EE I+R+EL+DNFCFY YD
Sbjct: 272 AISNLSPWFHFGMISVQRCILEIKEYKKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDL 331
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 387
++GA+ WA ++L H DKR++IY E ++T D LWNA Q +MV GKMHGF+RMYW
Sbjct: 332 IEGAYPWAIETLNKHRKDKRKYIYFLNHLENSETHDDLWNACQNQMVTIGKMHGFLRMYW 391
Query: 388 AKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIR 447
AKKILEWT PE AL A YLN+KY IDG DPNGYVGCMWSICGVHD GW ER +FGKIR
Sbjct: 392 AKKILEWTETPEIALEWANYLNNKYSIDGCDPNGYVGCMWSICGVHDHGWPERDIFGKIR 451
Query: 448 YMNYSGCKRKFDVDGYI 464
YMNY GCKRKF++ ++
Sbjct: 452 YMNYEGCKRKFNIAEFV 468
>gi|195647124|gb|ACG43030.1| hypothetical protein [Zea mays]
Length = 376
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 262/369 (71%), Gaps = 12/369 (3%)
Query: 6 PPS--TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN--VPV 61
PP+ + V P R+R+L G GPVVYWM RDQR+ DNWAL+HA + A + P+
Sbjct: 2 PPAIPSLVHPSRVRILHPGG-SHIHGPVVYWMLRDQRLADNWALLHAAELAAASTPAAPL 60
Query: 62 AVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A+AF LF + LGA RQLGF+LRGLR L + F L G AE +P+ VR
Sbjct: 61 AIAFTLFPRPFLLGAHLRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE--LPSLVRRL 118
Query: 120 GASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GAS LV DFSPLR +R D + R + ++ +H+VDAHNVVPVW AS KLEYSAKT
Sbjct: 119 GASALVADFSPLRPVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTF 178
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R K+NK++ EYL++YP + Q +S+DWD++I ++ + VPEI WCE GE +
Sbjct: 179 RSKVNKVINEYLVEYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESS 238
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
AMEVL G+KDGFLTKR+KNY T RN+P KP ALS LSPYLHFG ISAQRCALEA+K R L
Sbjct: 239 AMEVLLGNKDGFLTKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKRRHL 298
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
P+++DTFLEELI+RRELADNFC+YQP YDSL GAWEWARK+L DH DKREHIYT+EQ
Sbjct: 299 SPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQL 358
Query: 357 EKAQTADPL 365
E A+T+DP+
Sbjct: 359 ENAKTSDPV 367
>gi|308810671|ref|XP_003082644.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
gi|116061113|emb|CAL56501.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
Length = 484
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/452 (48%), Positives = 284/452 (62%), Gaps = 10/452 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLR 87
VVY+ RD R N AL A AN VP+ VA ++ G AR+ F L G R
Sbjct: 36 VVYYCDRDARTSCNDALARATRMANGFGVPLVVAMHVGRDLSGRGIGGARRAVFGLEGRR 95
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
L + +A + AS +V DF+PLRE R + I +
Sbjct: 96 ELDEALRGRGAATRTTIGDDAALGVLETCEAVNASAVVCDFTPLREGRATRATIARALEC 155
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT--R 205
V EVDAHNVVP WVAS+K EY+A+T+R KI K L E+L +++ + + G+ +
Sbjct: 156 PVV--EVDAHNVVPAWVASDKQEYAARTIRPKIRKKLDEFLTAPTVMDDLVVRAAGSLAQ 213
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM-EVLKGSKDGFLTKRLKNYPTDRNNPL 264
DW +++A GA VPE+ W + GE AA+ +L S D FL RL Y +RN P
Sbjct: 214 METDWAALVADARANGAHVPEVHWIKPGEKAALASLLDPSVDSFLPDRLALY-GERNKPT 272
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRELADNFCFYQP 323
PRA+S LSPYL+ GQ++ +R A EA + R + EAID++LEELI+RREL+DNFC Y P
Sbjct: 273 SPRAVSRLSPYLNHGQLAPRRAAWEAVQLRGIVADEAIDSYLEELIIRRELSDNFCLYNP 332
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+YDSL+GA +WA+ SL HASDKRE++Y E+A+T D LWNA+Q E+ + G+MHGFM
Sbjct: 333 DYDSLRGASQWAQDSLALHASDKREYVYDYATLERAKTHDELWNAAQKELYHLGRMHGFM 392
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVF 443
RMYWAKKILEWT PE AL AI LND Y +DG DPNGYVGCMWSI GVHDQGWKER VF
Sbjct: 393 RMYWAKKILEWTPSPEIALETAIQLNDTYALDGLDPNGYVGCMWSIAGVHDQGWKERAVF 452
Query: 444 GKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
GK+RYMNY+GCKRKFD+ Y+ ++ G+K
Sbjct: 453 GKVRYMNYAGCKRKFDIGEYVRRIESETRGSK 484
>gi|346651880|pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
gi|346651881|pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
gi|346651882|pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 228/478 (47%), Positives = 294/478 (61%), Gaps = 32/478 (6%)
Query: 4 LTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
L P + + P RIR LK G + GPVVYWM RDQR DNWAL+ + A + NVPV V
Sbjct: 14 LVPRGSHMNPKRIRALKSGK--QGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVV 71
Query: 64 AFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123
F L D+FL A RQ FML+GL+ L+ ++ +I F +G+ + I FV++ A
Sbjct: 72 VFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRK-KIPSFFLRGDPGEKISRFVKDYNAGT 130
Query: 124 LVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI--- 180
LVTDFSPLR + +K+ + +S + EVDAHNVVP W AS+K EY+A T R K+
Sbjct: 131 LVTDFSPLRIKNQWIEKVISGIS--IPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYAL 188
Query: 181 -------------NKLLPEYLIDYPMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVPE 226
N + PE M+E + TG + + A+L+ + E
Sbjct: 189 LPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLP----ERALLKNKDPLFE 244
Query: 227 IGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC 286
E GE AA +V+ + F+ RL +Y RN+P K LS LSPYLHFGQIS+QR
Sbjct: 245 PWHFEPGEKAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQRV 299
Query: 287 ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDK 346
LE KA P + FL+E+++ +E++DNFC+Y P YD + WA++SL H +D
Sbjct: 300 VLEVEKAES-NPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDV 358
Query: 347 REHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAI 406
R HIYT E+FE +T DPLWNASQME++ GKMHG+ RMYWAKKILEW+ PE+AL IAI
Sbjct: 359 RSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAKKILEWSESPEKALEIAI 418
Query: 407 YLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
LND+YE+DGRDPNGY G WSI GVHD+ W ER V GKIRYM+Y GCKRKFDV YI
Sbjct: 419 CLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYI 476
>gi|340719303|ref|XP_003398094.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 1 [Bombus
terrestris]
Length = 494
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/456 (45%), Positives = 289/456 (63%), Gaps = 16/456 (3%)
Query: 15 RIRVL-KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RI+ L K + +K ++YWMFRD R +DNWAL+ A A ++NVP+ + F + FL
Sbjct: 39 RIQYLSKLNDVKEKCKGILYWMFRDIRTQDNWALLFAQKIAVESNVPLHICFCIMPSFLN 98
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R F+L+GL +++ ++ + F L GE ++I FV+ ++ DF PL+
Sbjct: 99 ASMRYYKFLLKGLMEIEKECKQ-LNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKL 157
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
D + + + V I+++DAHN+VP W AS K E++AKT+R KIN L E+L ++P
Sbjct: 158 PMSWIDNVQKNLPEDVPIYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPP 217
Query: 193 MLEQPI---EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+++ P EK+ +WD + V EI W + G ++ L + F+
Sbjct: 218 VIKHPYLTKEKFENN----NWDITLQDV-EASKPTAEITWAKPGYRNGIKEL----ENFI 268
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
L+ Y + NNPL A+S LSP+ HFG IS QRC LE R+ + L +++++F+EE I
Sbjct: 269 QNHLQKYGDEHNNPLS-NAISNLSPWFHFGMISVQRCILEIREYKGLYKKSVESFMEEAI 327
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
+RREL+DNFCFY YD ++GA+ WA K+L H D R++IY+ Q E ++T D LWNA
Sbjct: 328 IRRELSDNFCFYNEKYDLVEGAYPWAIKTLNKHRKDTRKYIYSLSQLENSKTHDDLWNAC 387
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q +M+ GKMHGF+RMYWAKK+LEWT PE AL A YLN+KY IDG DPNGYVGCMWSI
Sbjct: 388 QNQMIITGKMHGFLRMYWAKKLLEWTETPEIALEWANYLNNKYSIDGCDPNGYVGCMWSI 447
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
CGVHD GW ER +FGKIRYMNY+GCKRKF+V ++
Sbjct: 448 CGVHDHGWPERDIFGKIRYMNYNGCKRKFNVAEFVT 483
>gi|340719305|ref|XP_003398095.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 2 [Bombus
terrestris]
Length = 480
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/456 (45%), Positives = 289/456 (63%), Gaps = 16/456 (3%)
Query: 15 RIRVL-KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RI+ L K + +K ++YWMFRD R +DNWAL+ A A ++NVP+ + F + FL
Sbjct: 25 RIQYLSKLNDVKEKCKGILYWMFRDIRTQDNWALLFAQKIAVESNVPLHICFCIMPSFLN 84
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R F+L+GL +++ ++ + F L GE ++I FV+ ++ DF PL+
Sbjct: 85 ASMRYYKFLLKGLMEIEKECKQ-LNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKL 143
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
D + + + V I+++DAHN+VP W AS K E++AKT+R KIN L E+L ++P
Sbjct: 144 PMSWIDNVQKNLPEDVPIYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPP 203
Query: 193 MLEQPI---EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+++ P EK+ +WD + V EI W + G ++ L + F+
Sbjct: 204 VIKHPYLTKEKFENN----NWDITLQDV-EASKPTAEITWAKPGYRNGIKEL----ENFI 254
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
L+ Y + NNPL A+S LSP+ HFG IS QRC LE R+ + L +++++F+EE I
Sbjct: 255 QNHLQKYGDEHNNPLS-NAISNLSPWFHFGMISVQRCILEIREYKGLYKKSVESFMEEAI 313
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
+RREL+DNFCFY YD ++GA+ WA K+L H D R++IY+ Q E ++T D LWNA
Sbjct: 314 IRRELSDNFCFYNEKYDLVEGAYPWAIKTLNKHRKDTRKYIYSLSQLENSKTHDDLWNAC 373
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q +M+ GKMHGF+RMYWAKK+LEWT PE AL A YLN+KY IDG DPNGYVGCMWSI
Sbjct: 374 QNQMIITGKMHGFLRMYWAKKLLEWTETPEIALEWANYLNNKYSIDGCDPNGYVGCMWSI 433
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
CGVHD GW ER +FGKIRYMNY+GCKRKF+V ++
Sbjct: 434 CGVHDHGWPERDIFGKIRYMNYNGCKRKFNVAEFVT 469
>gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
Length = 464
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/471 (48%), Positives = 292/471 (61%), Gaps = 32/471 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR LK G + GPVVYWM RDQR DNWAL+ + A + NVPV V F L D+
Sbjct: 3 MNPKRIRALKSGK--QGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDE 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ FML+GL+ L+ ++ +I F +G+ + I FV++ A LVTDFSP
Sbjct: 61 FLEAGIRQYEFMLKGLQELEVSLSRK-KIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI---------- 180
LR + +K+ + +S + EVDAHNVVP W AS+K EY+A T R K+
Sbjct: 120 LRIKNQWIEKVISGIS--IPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEE 177
Query: 181 ------NKLLPEYLIDYPMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
N + PE M+E + TG + + A+L+ + E E G
Sbjct: 178 FPELEPNSVTPELSAGAGMVETLSDVLETGVKALLP----ERALLKNKDPLFEPWHFEPG 233
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA +V+ + F+ RL +Y RN+P K LS LSPYLHFGQIS+QR LE KA
Sbjct: 234 EKAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQRVVLEVEKA 288
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
P + FL+E+++ +E++DNFC+Y P YD + WA++SL H +D R HIYT
Sbjct: 289 ES-NPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTL 347
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYE 413
E+FE +T DPLWNASQME++ GKMHG+MRMYWAKKILEW+ PE+AL IAI LND+YE
Sbjct: 348 EEFEAGKTHDPLWNASQMELLSTGKMHGYMRMYWAKKILEWSESPEKALEIAICLNDRYE 407
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+DGRDPNGY G WSI GVHD+ W ER V GKIRYM+Y GCKRKFDV YI
Sbjct: 408 LDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYI 458
>gi|358337824|dbj|GAA56147.1| deoxyribodipyrimidine photo-lyase, partial [Clonorchis sinensis]
Length = 893
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/467 (44%), Positives = 285/467 (61%), Gaps = 37/467 (7%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
G V+YWM RDQRV+DNWA ++A A K VP+ F + +F A R F++ GL
Sbjct: 431 GGVLYWMNRDQRVQDNWAFLYAQRLALKFEVPLHACFCMVPRFQAATLRHFTFLVDGLAE 490
Query: 89 LQRNIEETFQILFFL---------------------------FQGEAEDNIPNFVRECGA 121
+++ QI F L F+G + + N V+
Sbjct: 491 VEKEC-CALQIPFHLVLTDSPSSKIPTGNKRSYAAVEESDDFFEGTVAETVVNLVQRLRI 549
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
+VTDF PLRE ++ + D++ +VDAHNV+P+W AS+KLEY+A+T+R K++
Sbjct: 550 GCVVTDFCPLREPSAWVERTSRLLPDTIPFCQVDAHNVIPIWFASDKLEYAARTIRRKLH 609
Query: 182 KLLPEYLIDYPML-EQPIEKWTGT-RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+ L ++P+L P + + QS++W+ + + L V + W + G M+
Sbjct: 610 EKATGLLTEFPVLTTHPYPTNSKSLAQSVNWED-LKSRLDVDHSVKPVDWAKGGTRIGMQ 668
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L F+TKRLK Y T RN+P K ALS LSP+ HFG I+ QR LE ++ R P+
Sbjct: 669 TLF----DFITKRLKAYATQRNDPTKD-ALSDLSPWFHFGHIAPQRALLEVQRVRTKDPK 723
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
++D F+EE +RREL+DNFCFY PNYDSLKGA++WA+ +LK H+ DKR+ YT +Q E A
Sbjct: 724 SVDAFIEEAFIRRELSDNFCFYNPNYDSLKGAYQWAQDTLKCHSKDKRDPAYTSKQLEAA 783
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEW-TTGPEEALAIAIYLNDKYEIDGRD 418
QT D LWNASQ ++V GK+HGF+RMYWAKKILEW GPE AL +A+YLND Y +DG D
Sbjct: 784 QTKDDLWNASQRQLVRRGKIHGFLRMYWAKKILEWHAEGPEAALRLALYLNDHYSLDGTD 843
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
PNG VG MWSICGVHDQGW ERP+FGKIR M Y GC+ KF V ++
Sbjct: 844 PNGVVGVMWSICGVHDQGWAERPIFGKIRCMTYKGCQGKFSVPAFVV 890
>gi|51246428|ref|YP_066312.1| DNA photolyase [Desulfotalea psychrophila LSv54]
gi|50877465|emb|CAG37305.1| probable DNA photolyase [Desulfotalea psychrophila LSv54]
Length = 458
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 219/456 (48%), Positives = 288/456 (63%), Gaps = 19/456 (4%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R R LK G + GPVVYW+ RDQRVRDNWAL+ A +A + V F L +LGA
Sbjct: 13 RGRRLKNGR--RGDGPVVYWVSRDQRVRDNWALLWAQQEAISRQKGLLVVFCLVPDYLGA 70
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
K+ Q FMLRGL +Q+ + E I F LF+ +D +P F+R+ A LLV+DF PLR
Sbjct: 71 KSSQYLFMLRGLARMQKKLHE-MNIHFTLFEQSPDDILPGFLRQIDAHLLVSDFDPLRIK 129
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
R+ +++ +V I++VD HN++P W+ S+K EY+A T+R KI +LL ++L D P L
Sbjct: 130 RQWTEQLIAQVV--TPIYQVDTHNIIPAWMVSDKKEYAAYTIRPKIKRLLDDFLTDIPPL 187
Query: 195 EQPIEKWTGTRQ---SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+ W T S +I+ + G E+ +GE +A + + D F+
Sbjct: 188 QHHPFSWAHTLALAGSSSLARVISTLNSSGCELRG-----AGEASA----QFAADSFIKI 238
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
L+NY RNNP SGLSPYLHFG +SAQR A + KL E + FLEELIVR
Sbjct: 239 GLENYSERRNNPCL-NGQSGLSPYLHFGHLSAQRLAWVVSRD-KLPIETKEPFLEELIVR 296
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
REL+DNFC Y+P YD+ G WARKSL H D+R ++Y+ E T + LWNA Q+
Sbjct: 297 RELSDNFCLYEPLYDTFAGFPAWARKSLDQHRCDERAYLYSFHDLEAGNTHEQLWNACQI 356
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
++V +GK+HG++RMYWAKKILEWT PE AL AI LND+Y +DGRDPNGY G WSI G
Sbjct: 357 DLVQSGKLHGYLRMYWAKKILEWTPNPETALEYAIRLNDRYSLDGRDPNGYAGVAWSIGG 416
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
VHD+ W ERPVFGKIRYMN +GC+RKFDV+ Y++ V
Sbjct: 417 VHDRAWAERPVFGKIRYMNEAGCRRKFDVNSYMSSV 452
>gi|350410392|ref|XP_003489031.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 1 [Bombus
impatiens]
Length = 494
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/438 (45%), Positives = 279/438 (63%), Gaps = 15/438 (3%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWMFRD R +DNWAL+ A A K NVP+ + F + FL A R F+L+GL ++
Sbjct: 56 ILYWMFRDIRTQDNWALLFAQKIAVKRNVPLHICFCIMPSFLNASMRYYKFLLKGLMEIE 115
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
++ + F L GE ++I FV+ ++ DF PL+ D + + + +
Sbjct: 116 EECKQ-LNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMLWIDNVQKNLPEDIP 174
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPI---EKWTGTRQ 206
I+++DAHN+VP W AS K E++AKT+R KIN L E+L ++P +++ P EK+
Sbjct: 175 IYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPPVIKHPYLTKEKFENN-- 232
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+WD + V EI W + G ++ L + F+ L+ Y +RNNPL
Sbjct: 233 --NWDITLQDV-EASKPTTEITWAKPGYRNGIKEL----ENFIQNHLQKYGDERNNPLS- 284
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
+S LSP+ HFG IS QRC LE ++ + L +++++F+EE I+RREL+DNFCFY YD
Sbjct: 285 NVISNLSPWFHFGMISVQRCILEIQEYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYD 344
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
++GA+ WA K+L H D R+++Y+ Q E ++T D LWNA Q +M+ GKMHGF+RMY
Sbjct: 345 LVEGAYPWAIKTLNKHRKDTRKYVYSLSQLENSKTHDDLWNACQNQMIITGKMHGFLRMY 404
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
WAKK+LEWT PE AL A YLN+KY IDG DPNGYVGCMWSICGVHD GW ER +FGKI
Sbjct: 405 WAKKLLEWTEIPEIALEWANYLNNKYSIDGCDPNGYVGCMWSICGVHDHGWPERDIFGKI 464
Query: 447 RYMNYSGCKRKFDVDGYI 464
RYMNY+GCKRKF+V ++
Sbjct: 465 RYMNYNGCKRKFNVAEFV 482
>gi|350410395|ref|XP_003489032.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 2 [Bombus
impatiens]
Length = 480
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/438 (45%), Positives = 279/438 (63%), Gaps = 15/438 (3%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWMFRD R +DNWAL+ A A K NVP+ + F + FL A R F+L+GL ++
Sbjct: 42 ILYWMFRDIRTQDNWALLFAQKIAVKRNVPLHICFCIMPSFLNASMRYYKFLLKGLMEIE 101
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
++ + F L GE ++I FV+ ++ DF PL+ D + + + +
Sbjct: 102 EECKQ-LNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMLWIDNVQKNLPEDIP 160
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPI---EKWTGTRQ 206
I+++DAHN+VP W AS K E++AKT+R KIN L E+L ++P +++ P EK+
Sbjct: 161 IYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPPVIKHPYLTKEKFENN-- 218
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+WD + V EI W + G ++ L + F+ L+ Y +RNNPL
Sbjct: 219 --NWDITLQDV-EASKPTTEITWAKPGYRNGIKEL----ENFIQNHLQKYGDERNNPLS- 270
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
+S LSP+ HFG IS QRC LE ++ + L +++++F+EE I+RREL+DNFCFY YD
Sbjct: 271 NVISNLSPWFHFGMISVQRCILEIQEYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYD 330
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
++GA+ WA K+L H D R+++Y+ Q E ++T D LWNA Q +M+ GKMHGF+RMY
Sbjct: 331 LVEGAYPWAIKTLNKHRKDTRKYVYSLSQLENSKTHDDLWNACQNQMIITGKMHGFLRMY 390
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
WAKK+LEWT PE AL A YLN+KY IDG DPNGYVGCMWSICGVHD GW ER +FGKI
Sbjct: 391 WAKKLLEWTEIPEIALEWANYLNNKYSIDGCDPNGYVGCMWSICGVHDHGWPERDIFGKI 450
Query: 447 RYMNYSGCKRKFDVDGYI 464
RYMNY+GCKRKF+V ++
Sbjct: 451 RYMNYNGCKRKFNVAEFV 468
>gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
5692]
gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
5692]
Length = 469
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/462 (47%), Positives = 277/462 (59%), Gaps = 15/462 (3%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
+ GPV YWM RDQR+ DNWAL+ A A P+ + F L + G R FML G
Sbjct: 21 RGSGPVAYWMSRDQRLHDNWALLQAQHMARTRQAPLIIVFCLVPSYSGGARRHFDFMLTG 80
Query: 86 LRLLQRNIEETFQILFFLFQGE-AEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
LR + + + I F L GE + F R +V DF PLR ++ +
Sbjct: 81 LRQVADSAAK-LGIPFVLLTGEDPPGELAGFCRTHAIGTVVMDFDPLRTKQQWQHTFAGH 139
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
EVDAHNVVP ASEK EY+A+T+R K+ + LPE+L +P L W G+
Sbjct: 140 WEGECL--EVDAHNVVPCRWASEKQEYAARTIRPKLQRQLPEFLDPFPELVPHPVPWRGS 197
Query: 205 R-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
DW++ + L P + W SGE+ A+++ + F+ L Y RN+P
Sbjct: 198 LLPEPDWEAA-SRSLAAPEYGPPLSWS-SGEETALDLARE----FIASGLSAYAEKRNDP 251
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
A+SGLSPYLHFGQI+ QR AL AR A E+ + FLEEL++RRELA+NFCFY P
Sbjct: 252 TA-GAVSGLSPYLHFGQIAPQRVALMARDANWAPAESREGFLEELVIRRELAENFCFYNP 310
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
YD G WA+++L DH D RE +YT EQ+E A+T DPLWNA+Q EMV GKMHG+M
Sbjct: 311 VYDCFGGLPAWAQQTLDDHRGDHREVVYTFEQWEAARTHDPLWNAAQQEMVQTGKMHGYM 370
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVF 443
RMYWAKKILEW+ PEEAL+ AI LND+YE+DGRDPNGY G +WSI GVHD+ WKERPV+
Sbjct: 371 RMYWAKKILEWSASPEEALSTAITLNDRYELDGRDPNGYTGVLWSIGGVHDRPWKERPVY 430
Query: 444 GKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSG 485
GK+RYMN G RKFDV AY++R T R +L G
Sbjct: 431 GKVRYMNDRGAARKFDVQ---AYIRRFFPATASERQGTLPLG 469
>gi|340384751|ref|XP_003390874.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 462
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/429 (47%), Positives = 284/429 (66%), Gaps = 11/429 (2%)
Query: 3 SLTPPSTAVQPGRIRVLKQGSLDKK---RGPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
SL ++ R R++ + + K +GPV+YWM RDQRV+DNW L+++ + ANK+ V
Sbjct: 19 SLLIAGSSFNMKRCRLITKPTAGKSSIVKGPVLYWMSRDQRVQDNWGLVYSQELANKHGV 78
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
P+ VAF L +FL A RQ FM+ GL+ +++ + + +I F L G+A+ +P F+ +
Sbjct: 79 PLLVAFTLVPKFLDATWRQYSFMMSGLQEVEKELLK-LKIPFHLLLGKAQSCLPPFIAKE 137
Query: 120 GASLLVTDFSPLR-EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
S++V DFSPLR + K+ V + +VDAHN+VPVW+AS+K EY+A+TLR
Sbjct: 138 SVSVVVCDFSPLRVSLGWVKETGAELDKIKVPLVQVDAHNIVPVWLASDKQEYAARTLRN 197
Query: 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
KI+K LPE+L ++P++ T +S +W + L V E+ W G +A +
Sbjct: 198 KIHKFLPEFLTEFPLVTLHTHNSKLTMKSTNWIKAKES-LEVDMTVSEVSWATPGTNAGL 256
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
+VL D F TKRLK + RN+P K +LS LSP+ HFGQ+ QR L+ +
Sbjct: 257 KVL----DDFCTKRLKFFAAQRNDPNK-DSLSNLSPWFHFGQVGVQRAILKVKSYSSKHS 311
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
E++ ++EE +VRRELADNFC+Y P+YDS+ GA +WA+ +LK H DKRE+IYT+EQFE
Sbjct: 312 ESVSAYIEEAVVRRELADNFCYYNPHYDSISGAAQWAQDTLKAHKKDKREYIYTQEQFES 371
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRD 418
+ T DPLWNA+Q++MV GKMHGF+RMYWAKKILEWT+ PEE L IAIYLNDKYEIDGRD
Sbjct: 372 SSTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKILEWTSSPEEGLRIAIYLNDKYEIDGRD 431
Query: 419 PNGYVGCMW 427
PNGYV ++
Sbjct: 432 PNGYVDSLF 440
>gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
Length = 462
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 232/468 (49%), Positives = 295/468 (63%), Gaps = 24/468 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR LK G G V YWM RDQRV DNWAL+ A A + NVPV V F L +
Sbjct: 1 MNPKRIRTLKPGK--SGDGSVAYWMSRDQRVEDNWALLFAQVIAQEANVPVVVVFCLIEG 58
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FLGA R FML+GL+ L+ + +I F+ +G+ IP FV+E L+TDFSP
Sbjct: 59 FLGAGRRHYEFMLKGLQELEEALSRK-KIPFYFLRGDPGQKIPEFVKEYEVGTLITDFSP 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR KI + + + EVDAHNVVP W AS K EY+A T R K+ L E+L +
Sbjct: 118 LRIKAEWVGKIISAIE--IPFFEVDAHNVVPCWEASPKQEYAAHTFRPKLYGHLSEFLEE 175
Query: 191 YPMLEQ-----PIEKWTG-------TRQSIDWDSIIAAVLRKGAEVP-EIGWCESGEDAA 237
+P LE I TG TR++ + + ++ E E GE AA
Sbjct: 176 FPELEPNSESLKIRSGTGMPGILFRTRETEIKALFPEEISDENKDLLFEPEHFEPGEKAA 235
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
+ + + FL RL +Y T RN+P K ALS LSPYLHFGQISAQR LE KA K
Sbjct: 236 RKEM----ESFLAARLDSYNTLRNDPTK-NALSNLSPYLHFGQISAQRVVLEVEKA-KSD 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
PE+ FL+E++V +E+ADNFC+Y P YDS + +WA+KSL H +D+R++IYT E+FE
Sbjct: 290 PESKKAFLDEILVWKEIADNFCYYNPGYDSFESFPDWAKKSLNAHRNDRRKYIYTFEEFE 349
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGR 417
+T DPLWNASQ+E++ GKMH +MRMYWAKKILEW+ PE+AL +AI LND+YE+DGR
Sbjct: 350 AGKTHDPLWNASQIELLRTGKMHSYMRMYWAKKILEWSESPEKALEVAICLNDRYELDGR 409
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
DPNGY G WSI G+HD+ W+ER V GKIRYM+Y GCKRKF+V YIA
Sbjct: 410 DPNGYAGIAWSIGGLHDRAWREREVTGKIRYMSYEGCKRKFNVKLYIA 457
>gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379]
gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus
DSM 2379]
Length = 450
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/462 (48%), Positives = 288/462 (62%), Gaps = 24/462 (5%)
Query: 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
TAV RI L + + + GPVVYWM RDQR DNWAL+HA + A + P+ V F L
Sbjct: 2 TAVDIRRIHPLNR--REGQDGPVVYWMSRDQRAMDNWALLHAQELALERRAPLVVLFTLA 59
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQIL------FFLFQGEAEDNIPNFVRECGAS 122
FLGA RQ GFMLRGL ET Q+L F+L +GE + +FV
Sbjct: 60 PSFLGATLRQYGFMLRGL-------AETAQLLAKMNIPFYLLRGEPVGQLCSFVERNRVG 112
Query: 123 LLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK 182
+VTDF PLR ++R + R+ V EVD+HN+VP S+K EY A TLR K+ +
Sbjct: 113 TVVTDFDPLR-VKRVWREGAARLC-GVPFFEVDSHNIVPCRFVSDKQEYGAHTLRPKLRR 170
Query: 183 LLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
LL ++L ++P L W Q +D I++ L V E+ G AA E L+
Sbjct: 171 LLADFLHEFPPLIPHPHAWPVPFQPLDPQGILSD-LYMDRSVSELSNPLPGTRAAGERLR 229
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
F+ + L++Y RN+P S LSP+LHFGQ++ QR ALE + P + +
Sbjct: 230 S----FIAQGLEDYGLRRNDPCC-DGQSELSPWLHFGQLAPQRVALETVRTLSGSPSS-E 283
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
FL+ELIVRREL+DNFC + YD L+G WA K+L +H D+RE++YT+EQF+ A+T
Sbjct: 284 AFLDELIVRRELSDNFCLHNQAYDRLEGFPAWALKTLGEHRHDRREYLYTQEQFQDAETH 343
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DPLWNA+Q ++ GKMHG++RMYWAKKILEW+ PEEALA+AI LND+Y +DGRDPNGY
Sbjct: 344 DPLWNAAQRSLLLGGKMHGYLRMYWAKKILEWSASPEEALAVAIRLNDRYSLDGRDPNGY 403
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
G WS+ GVHD+ W ERPVFGKIRYMN GC+RKFDVD YI
Sbjct: 404 AGIAWSMGGVHDRAWGERPVFGKIRYMNDRGCRRKFDVDAYI 445
>gi|170716940|gb|ACB32172.1| DNA photolyase [Ampelophaga rubiginosa nucleopolyhedrovirus]
Length = 564
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/471 (43%), Positives = 286/471 (60%), Gaps = 26/471 (5%)
Query: 13 PGRIRVLK--------------QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN 58
P R+R+LK G++D G VVYWM RD RV+DNWA+I+A A +
Sbjct: 94 PRRVRILKLGRSRTAVVDDDTLNGNID---GGVVYWMSRDSRVQDNWAMIYAQRLAIERQ 150
Query: 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRE 118
VP+ V F L FL A RQ F+L GL+ +QR E I F + G + + ++V+
Sbjct: 151 VPLHVCFCLTSSFLNASLRQFDFLLEGLKSVQRECHE-LNIGFNVLDGSGDLTLNDWVQT 209
Query: 119 CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
S +V DF+PLR +R K+ ++++ V +VDAHN++P W AS K E A T R
Sbjct: 210 NNISAVVCDFNPLRVVRDWVTKVKSQLAPHVFFAQVDAHNIIPCWQASLKQEVYASTFRP 269
Query: 179 KINKLLPEYLIDYP-MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
K+ L +L ++P ++ P K T IDW ++ + V + W G D A
Sbjct: 270 KVLSQLDRFLTEFPAVIVHPYGK-NCTAADIDWHYLLQS-RDANKSVSPVKWAVPGYDHA 327
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
++ L F+ L Y + RNNP +S LSP+ HFGQIS QR L+ + +
Sbjct: 328 VKSLYI----FIQDNLSKYASLRNNPTTT-VISNLSPWFHFGQISVQRVVLKILSLKSVY 382
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
P+++D +++E++VRRELADNFCFY YD ++GA +WA++++ H D R +IY +
Sbjct: 383 PDSVDRYIDEVVVRRELADNFCFYNDRYDCVEGAPQWAQETIDQHKYDHRSYIYNLTELA 442
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGR 417
QT D LWN++Q ++ GKMHG+MRMYWAKKI+EWT E AL AI+LND Y +DGR
Sbjct: 443 SCQTHDELWNSAQAQLRCEGKMHGYMRMYWAKKIMEWTPSAEMALGYAIFLNDHYSVDGR 502
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
DPNGYVGCMWSICGVHD+ +KER +FG+IRYMNY+GCKRKF+VD YIA K
Sbjct: 503 DPNGYVGCMWSICGVHDRPFKERKIFGRIRYMNYAGCKRKFNVDLYIAKYK 553
>gi|410462734|ref|ZP_11316295.1| photolyase PhrII [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984146|gb|EKO40474.1| photolyase PhrII [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 449
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/464 (46%), Positives = 279/464 (60%), Gaps = 29/464 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P R+R L ++ GPVVYWM RDQR DNWAL+ A A + P+ VAF L
Sbjct: 3 VHPARVRPLSDKP--RRAGPVVYWMSRDQRAEDNWALLAAAGLARETGAPLHVAFALAPG 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F GA R FMLRGL + + + F L G+ +P F+ E A + VTDF P
Sbjct: 61 FPGASLRHYDFMLRGLAETEAALRAR-GVPFHLLLGDPAAVVPPFLDELHAGVCVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR K + + + ++E DAHNVVP VAS + EY+A T R KI+K L E+L
Sbjct: 120 LRLKIAWKRAVAE--AHAGPLYEADAHNVVPCVVASPRREYAAATFRPKIHKRLQEFLEP 177
Query: 191 YP---------MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
+P ++ P+ W+ R S+ D+ + VP+I G +AA L
Sbjct: 178 FPELPVFPDAALVATPLVDWSAARASLAVDA-------RPGPVPDI---VPGPNAARAAL 227
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
D F +RL Y RN+P A+SGLSPY HFGQ++ QR ALE AR +
Sbjct: 228 ----DAFTAERLPGYAARRNDP-NAGAVSGLSPYFHFGQLAPQRAALEVLAARGRHAADV 282
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
D +LEEL+VRREL+DN+C Y P+YD + +WARK+L HA D+REH YT QFE A T
Sbjct: 283 DAYLEELVVRRELSDNYCHYTPHYDRYEALPDWARKTLDAHAGDEREHRYTPAQFEAAAT 342
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
++ LWNA+Q E+V G++HG+MRMYWAKKILEW+ P +AL A+ LND+Y +DGRDPNG
Sbjct: 343 SEALWNAAQRELVATGRIHGYMRMYWAKKILEWSPSPRQALDTALALNDRYALDGRDPNG 402
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
VG +WS+ G+HD+ W RPVFG+IRYMN GC+RKFD D YIA
Sbjct: 403 VVGVLWSVGGLHDRPWANRPVFGQIRYMNERGCRRKFDADAYIA 446
>gi|68304208|ref|YP_249676.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973037|gb|AAY84003.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 489
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/468 (45%), Positives = 288/468 (61%), Gaps = 17/468 (3%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
PS R+R L S K+ G VVYWM RD RV+DNWALI+A + A+ +P+ V F
Sbjct: 25 PSRVRVISRLRELVVASEGKEAGGVVYWMSRDSRVQDNWALIYAQELAHTAKLPLYVVFC 84
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
+ F A RQ F+++GL ++ ++ I F + G A+ + ++VRE +V
Sbjct: 85 MTKSFNNASMRQFHFLIKGLEEVRVECQK-LDITFVMLDGSADLVLNDWVREHDICAVVC 143
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
DF+PLR +R +I +++ D+V +VDAHNVVP WVAS K EYSA +R K+N L
Sbjct: 144 DFNPLRTVREWVSRIRDQLPDTVYFAQVDAHNVVPCWVASNKQEYSAMFMRKKLNSKLEC 203
Query: 187 YLIDYPMLEQPIEKWT-----GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
YL +P + + + + T IDW ++A+ V + W E G +A+ VL
Sbjct: 204 YLKPFPPVVRHEYRSSVVLDPCTTTHIDWQQLLAS-RDADVSVGPVDWIEPGYISALNVL 262
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC-----ALEARKARKL 296
F+ L Y RNNP+ + S +SP+ HFGQIS QR +L+ K
Sbjct: 263 AR----FIRCNLLKYKMSRNNPVL-KTQSNMSPFYHFGQISVQRVMLHLNSLKINKNDSG 317
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
I+ ++EE VRRELADNFCFY NYD+ GA WA+++L H SD R++IY+ QF
Sbjct: 318 IDSNINDYIEECFVRRELADNFCFYNSNYDTFLGAPNWAKETLVIHKSDSRQYIYSLLQF 377
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG 416
E QT D LWNA+Q ++ GK+HG++RMYWAKKILEWT PE+AL +IYLND+Y +DG
Sbjct: 378 EHNQTHDELWNAAQRQLRNEGKIHGYLRMYWAKKILEWTQTPEQALEYSIYLNDRYSLDG 437
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
RDPNGYVGCMWSICG+HD+ + ER VFGKIRYMN +GC+RKF+V YI
Sbjct: 438 RDPNGYVGCMWSICGLHDRSFLERQVFGKIRYMNRNGCERKFNVKQYI 485
>gi|451946553|ref|YP_007467148.1| Deoxyribodipyrimidine photo-lyase type II [Desulfocapsa sulfexigens
DSM 10523]
gi|451905901|gb|AGF77495.1| Deoxyribodipyrimidine photo-lyase type II [Desulfocapsa sulfexigens
DSM 10523]
Length = 459
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/460 (45%), Positives = 283/460 (61%), Gaps = 15/460 (3%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
V R R+L++G L GPV+YWM RDQRV DNWAL++A ++A + + V F +
Sbjct: 6 TVDQERSRLLQRGHLGD--GPVIYWMSRDQRVHDNWALLYAQERALALHRGLIVVFCIDL 63
Query: 70 QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129
+ A R + F+L GL LQ +++ I F+L G + +P F+++ +LL+TDF
Sbjct: 64 DYPAANLRHVAFLLHGLEELQHTLQKA-AIGFYLLHGAPDIALPPFLKKINPALLITDFD 122
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
PLR ++ K S + + EVDAHN+VP W+AS+K EY+A T+R KI +LLP +L
Sbjct: 123 PLRIKKQWKKDTLQYCS--MPVFEVDAHNIVPCWLASDKREYAAYTIRKKIQRLLPRFLT 180
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
D+P LE+ ++ Q + + + K V E+ W GE A +L FL
Sbjct: 181 DFPPLEK--HPYSSATQPFSARTYLKQI--KDKSVAEVHWIHPGERAGKNLLAE----FL 232
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
L +Y T+RNNP S LSPY HFGQ++ QR A E K+ E + +LEELI
Sbjct: 233 AHGLHSYSTERNNPCL-DGQSNLSPYFHFGQLAPQRVAWEVEKSPADL-ENKEAYLEELI 290
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
+RREL+DNFC+Y +YD +WA KSL H D R ++ + E A T D LWNA
Sbjct: 291 IRRELSDNFCYYSHDYDRCTTFPDWAGKSLDIHRGDVRSYVANLQTLESATTEDELWNAC 350
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q ++ GK+HG++RMYWAKKILEW+T PEEA+ AIYLNDKY +DGRDPNGY G WSI
Sbjct: 351 QQDLAEQGKLHGYLRMYWAKKILEWSTSPEEAMYNAIYLNDKYSLDGRDPNGYAGVAWSI 410
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
GVHD+ W ERPVFGKIRYMN +GCKRKFD+ Y+ VK+
Sbjct: 411 GGVHDRAWAERPVFGKIRYMNSNGCKRKFDIACYLKRVKK 450
>gi|320355418|ref|YP_004196757.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
propionicus DSM 2032]
gi|320123920|gb|ADW19466.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
propionicus DSM 2032]
Length = 451
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/444 (46%), Positives = 275/444 (61%), Gaps = 11/444 (2%)
Query: 21 QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG 80
G GPV+YWM R R RDNWAL+HA QA VP+AVAF L FL A RQ
Sbjct: 2 HGGAVHTSGPVLYWMHRAFRSRDNWALLHAAQQARYLGVPLAVAFCLAPTFLDATLRQYD 61
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDK 140
F L GL R++ E I L G+ + + E +L+ TDF PLR R+
Sbjct: 62 FFLNGLEETARSLAEA-NIPLILRSGDPAEEMVRLCTELTPALVATDFDPLRVKRQWLRT 120
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
+ V +HEVD+ N+VP W+AS++ E+ AKT R +I++ L ++L P L+
Sbjct: 121 VTGHVR--CPVHEVDSRNIVPAWIASDRREFMAKTFRPRIHRHLQDFLTVVPPLQPHPHA 178
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W S+D+ ++ A LR V + W SGE AA + L D FL +RL Y R
Sbjct: 179 WPTLPGSLDFPAL-RARLRVDRSVQPVSWPRSGEAAAWDTL----DTFLRERLAGY-GQR 232
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N+P + S LSP+LHFG IS+ LE + R L E +D+F+EEL+VRRELADNFC
Sbjct: 233 NDPNQ-SVCSNLSPFLHFGMISSHAIVLEIGR-RGLHGEVVDSFIEELVVRRELADNFCL 290
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P+YD + G EWA+++L H D R ++Y QF++AQT DPLWNA+Q ++V +GKM
Sbjct: 291 HTPDYDQISGFPEWAQRTLARHRHDPRPYVYDDAQFDRAQTHDPLWNAAQHQLVASGKMA 350
Query: 381 GFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
G+MRMYWAKKILEW+ P EAL IAI+LND+Y +DGR+ NGY G WSI GVHD+GW ER
Sbjct: 351 GYMRMYWAKKILEWSEDPAEALRIAIWLNDRYALDGRETNGYSGIAWSIGGVHDRGWTER 410
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYI 464
P+FG IR M+ +GC+RKFDV+ YI
Sbjct: 411 PIFGTIRSMSEAGCRRKFDVNRYI 434
>gi|387152011|ref|YP_005700947.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
Length = 478
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/480 (44%), Positives = 291/480 (60%), Gaps = 22/480 (4%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S V PGR V + G RGPV+YWM R+ R DNWAL+HA+ +A P+AV + L
Sbjct: 2 SGRVHPGR--VWRHGDSRAVRGPVLYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCL 59
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A RQ F+LRG+R + E I FFL QG+ D +P F G L+VTD
Sbjct: 60 SPRFLDAAYRQFHFLLRGMRGTAETLRE-HGIPFFLLQGDPADEVPRFAATHGTGLVVTD 118
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F LR R ++ R + + +HEVD NVVP +AS+K EY+A+TLR KI++LLPEY
Sbjct: 119 FDVLRLKRAWLGQV--REALACPLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEY 176
Query: 188 LIDYPMLEQP---IEKWTG----TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
L +P L + W + DWD+++AA VP + +G DA +
Sbjct: 177 LDPFPSLATEASGVAAWKAPVPDAMAAPDWDALLAA-HPADRSVPAL----TGPDAPVPG 231
Query: 241 LKGSK---DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
+G++ + FLT R+ Y RN+P A+SGLSPYLHFG ++AQR +
Sbjct: 232 EEGARRTLETFLTSRIHRY-EKRNDP-NADAVSGLSPYLHFGMMAAQRVVQRVTASTAGS 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
+A +F+EEL+VRRELADNFC + P+YD++ WA+ +L H D R H+Y + E
Sbjct: 290 ADARASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALE 349
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGR 417
KA+TADPLWNA Q +++ G +HG+MRMYWAK++L WT PEEA+ IA+ ND++ +DGR
Sbjct: 350 KARTADPLWNAGQTQLMRCGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGR 409
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
D NGY G WS+ GVHD+ W ERPV G IR M Y+G + KFDV YIA ++ + GG + R
Sbjct: 410 DSNGYAGIAWSLGGVHDRPWGERPVQGTIRCMTYNGARGKFDVAAYIARMESLRGGGQAR 469
>gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4]
gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris
DP4]
Length = 473
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/480 (44%), Positives = 291/480 (60%), Gaps = 22/480 (4%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S V PGR V + G RGPV+YWM R+ R DNWAL+HA+ +A P+AV + L
Sbjct: 2 SGRVHPGR--VCRHGDSRAVRGPVLYWMHREHRAHDNWALLHAIGEAKAAGAPLAVVWCL 59
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A RQ F+LRG+R + E I FFL QG+ D +P F G L+VTD
Sbjct: 60 SPRFLDAAYRQFHFLLRGMRGTAETLRE-HGIPFFLLQGDPADEVPRFAATHGTGLVVTD 118
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F LR R ++ ++ +HEVD NVVP +AS+K EY+A+TLR KI++LLPEY
Sbjct: 119 FDVLRLKRAWLGQVHEALA--CPLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEY 176
Query: 188 LIDYPMLEQP---IEKWTG----TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
L +P L + W + DWD+++AA VP + +G DA +
Sbjct: 177 LDPFPSLATEASGVAAWKAPVPDAMAAPDWDALLAA-HPADRSVPAL----TGPDAPVPG 231
Query: 241 LKGSK---DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
+G++ + FLT R+ Y RN+P A+SGLSPYLHFG ++AQR +
Sbjct: 232 EEGARRTLETFLTSRIHRY-EKRNDP-NADAVSGLSPYLHFGMMAAQRVVQRVTASTAGS 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
+A +F+EEL+VRRELADNFC + P+YD++ WA+ +L H D R H+Y + E
Sbjct: 290 ADARASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALE 349
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGR 417
KA+TADPLWNA+Q +++ G +HG+MRMYWAK++L WT PEEA+ IA+ ND++ +DGR
Sbjct: 350 KARTADPLWNAAQTQLMRCGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGR 409
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
D NGY G WS+ GVHD+ W ERPV G IR M Y+G + KFDV YIA ++ + GG + R
Sbjct: 410 DSNGYAGIAWSLGGVHDRPWGERPVQGTIRCMTYNGARGKFDVAAYIARMESLRGGGQAR 469
>gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
Length = 447
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/441 (47%), Positives = 274/441 (62%), Gaps = 11/441 (2%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPVVYWM R+QRV DNW L HA A + + V F L D FLGA RQ GFML+GL
Sbjct: 18 GPVVYWMSREQRVADNWGLYHAQQLALERQAALLVVFILADGFLGATLRQYGFMLQGLEQ 77
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ R ++ I F L +GE ++ F+ + +V DF PLR R+ D + + +
Sbjct: 78 VARKLD-GLNIPFLLLEGEPRHSMLQFIAQEQTGCVVCDFDPLRIKRQWFDGVAAAATVA 136
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
V EVD HN+VP +AS K E+ A TLR K+ ++LPE+L+ P + Q W T
Sbjct: 137 VL--EVDGHNIVPCRIASVKREFGAYTLRPKLRRVLPEFLVSIPQVVQHPFAWKKTVAIP 194
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
D + + L+ A V + GE AA E L F+ + L Y + RN+P
Sbjct: 195 DTEQV-QIRLKPDAGVGVVPGFRPGEQAAFEALAD----FIAQGLNGYASRRNDP-TVHG 248
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
SGLSP+LHFG +S QR AL A + E ++ LEELIVRREL+DNFC Y +YD+L
Sbjct: 249 QSGLSPWLHFGHLSPQRIALAV--ATQGDSEDVEAMLEELIVRRELSDNFCLYCASYDTL 306
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
A +WA ++L+ H D R YT+ +FE+A T D LWNA+Q EM+ GKMHG++RMYWA
Sbjct: 307 DAAPDWAHRTLEKHRHDPRRFCYTQHEFEQAATHDLLWNAAQTEMLETGKMHGYLRMYWA 366
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
KKILEW+ PEEA++ AIYLND+Y +DGRDPNGY G WSICGVHD+ W ERPVFG IR+
Sbjct: 367 KKILEWSESPEEAISTAIYLNDRYSLDGRDPNGYAGIAWSICGVHDRAWGERPVFGSIRF 426
Query: 449 MNYSGCKRKFDVDGYIAYVKR 469
M+Y GCKRKF VD YI + ++
Sbjct: 427 MSYDGCKRKFKVDEYIRHWRK 447
>gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris
str. Hildenborough]
Length = 474
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/477 (44%), Positives = 290/477 (60%), Gaps = 22/477 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ PGR V + G RGPV+YWM R+ R DNWAL+HA+ +A P+AV + L +
Sbjct: 1 MHPGR--VWRHGDSRAVRGPVLYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPR 58
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ F+LRG+R + E I FFL QG+ D +P F G L+VTDF
Sbjct: 59 FLDAAYRQFHFLLRGMRGTAETLRE-HGIPFFLLQGDPADEVPRFAATHGTGLVVTDFDV 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R ++ R + + +HEVD NVVP +AS+K EY+A+TLR KI++LLPEYL
Sbjct: 118 LRLKRAWLGQV--REALACPLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDP 175
Query: 191 YPMLEQP---IEKWTG----TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
+P L + W + DWD+++AA VP + +G DA + +G
Sbjct: 176 FPSLATEASGVAAWKAPVPDAMAAPDWDALLAA-HPADRSVPAL----TGPDAPVPGEEG 230
Query: 244 SK---DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
++ + FLT R+ Y RN+P A+SGLSPYLHFG ++AQR + +A
Sbjct: 231 ARRTLETFLTSRIHRY-EKRNDP-NADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADA 288
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+F+EEL+VRRELADNFC + P+YD++ WA+ +L H D R H+Y + EKA+
Sbjct: 289 RASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKAR 348
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
TADPLWNA Q +++ G +HG+MRMYWAK++L WT PEEA+ IA+ ND++ +DGRD N
Sbjct: 349 TADPLWNAGQTQLMRCGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSN 408
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
GY G WS+ GVHD+ W ERPV G IR M Y+G + KFDV YIA ++ + GG + R
Sbjct: 409 GYAGIAWSLGGVHDRPWGERPVQGTIRCMTYNGARGKFDVAAYIARMESLRGGGQAR 465
>gi|299473188|emb|CBN78764.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 506
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/459 (45%), Positives = 290/459 (63%), Gaps = 18/459 (3%)
Query: 15 RIRVLKQGSLDKKRGP-VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD-QFL 72
R+R L S+ + +G VVYWM RDQR DNWA+++A + A + VP+ VAF L Q
Sbjct: 14 RVRCLTDASVPRDQGNCVVYWMSRDQRAEDNWAMLYAKNLAQEGGVPLVVAFVLGAWQVT 73
Query: 73 GAKA--RQLGFMLRGLRLLQRNIEETFQILFFLFQG-EAEDNIPNFVRECGASLLVTDFS 129
K R GFML+GL + ++ + +I F L Q E D +P F +E GA +VTD
Sbjct: 74 EPKTTLRYAGFMLKGLEETEGDLRKK-KIPFHLLQAAEPRDVVPAFAKELGALAIVTDMC 132
Query: 130 PLREIRRCKDKIC---NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
PLR+ R ++ N+ D + +VDAHNVVPVW S+K E A+T+R KI+ P+
Sbjct: 133 PLRDPTRRAREVAEELNKSGDGTPLFQVDAHNVVPVWATSDKQETMARTIRPKIHAR-PD 191
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+L P L P + T + DW + + L VPEI W + G A + L+
Sbjct: 192 FLGAIPEL-SPNPQGTKLPAATDWKAAQTS-LDLDRSVPEISWLKPGAKGASDNLQS--- 246
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
F+ R+K + NNP S +SPY + GQ+SAQ + + +R+ P+ + F+E
Sbjct: 247 -FIETRMKGFADLSNNP-NEDVCSHMSPYFNLGQMSAQAAVMRVKASRRH-PDGVKAFVE 303
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
+ +VRREL+DNFCFY NYD+L GA WAR+SL+ HA+D+RE Y+ ++ E+A+T + LW
Sbjct: 304 QGVVRRELSDNFCFYNDNYDNLSGAAGWARESLEAHANDQREWTYSVQELEEAKTHEDLW 363
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
NA+Q+++V +GKMH F+RMYWAKKILEW+ P +AL ++ NDKYE+DGRDPNG+ GC
Sbjct: 364 NAAQLQLVRDGKMHNFLRMYWAKKILEWSPSPHDALERCLFFNDKYELDGRDPNGFTGCA 423
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
WS+ G+HD GWKER VFGKIRYMNY+GCKRKFDV +++
Sbjct: 424 WSVMGIHDMGWKEREVFGKIRYMNYAGCKRKFDVQEFVS 462
>gi|340384943|ref|XP_003390970.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 319
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/308 (59%), Positives = 226/308 (73%), Gaps = 6/308 (1%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
EVDAHN+VPVW+AS+K EY+A+T+R KI+K LPE+L ++P + T +S +W
Sbjct: 2 EVDAHNIVPVWLASDKQEYAARTIRNKIHKFLPEFLTEFPPVTVHTHNSKLTMKSTNWIK 61
Query: 213 IIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGL 272
+ L V E+ W G +A ++VL D F TKRLK + RN+P K +LS L
Sbjct: 62 AKES-LEIDMTVSEVSWATPGTNAGLKVL----DEFCTKRLKFFAAQRNDPNKD-SLSNL 115
Query: 273 SPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW 332
SP+ HFGQI QR L+ + E++ ++EE +VRRELADNFC+Y P+YDS+ GA
Sbjct: 116 SPWFHFGQIGVQRTILKVKSYSSKHSESVSAYIEEAVVRRELADNFCYYNPHYDSISGAA 175
Query: 333 EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKIL 392
+WA+ +LK H DKRE+IYT+EQFE + T DPLWNA+Q++MV GKMHGF+RMYWAKKIL
Sbjct: 176 QWAQDTLKAHKKDKREYIYTQEQFESSSTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKIL 235
Query: 393 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYS 452
EWT+ PEE L IAIYLNDKYEIDGRDPNGYVGCMWSICG+HDQGW ER VFGKIRYMNY
Sbjct: 236 EWTSSPEEGLRIAIYLNDKYEIDGRDPNGYVGCMWSICGIHDQGWAERSVFGKIRYMNYQ 295
Query: 453 GCKRKFDV 460
GCKRKFDV
Sbjct: 296 GCKRKFDV 303
>gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
12261]
gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
12261]
Length = 456
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 285/457 (62%), Gaps = 16/457 (3%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R R+L+ G GPV YWM RDQRV DNWAL+ A A N P+ V F L FL A
Sbjct: 4 RGRILQNGI--PGEGPVAYWMNRDQRVEDNWALLEAQKYALLNKKPLLVVFCLTPHFLSA 61
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R FML GL +++ + I F L + EA ++PN +++ S L TDFSPLR
Sbjct: 62 SYRAYHFMLHGLHEVRQGLL-GLNIPFILLEQEAPLSLPNLIKKIDVSALFTDFSPLRIK 120
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-M 193
+ ++I ++ + +E+DAHN+VP W AS K EYSA+T R +I K +P++L P +
Sbjct: 121 KEWVEQIKKDIA--IPFYEIDAHNIVPCWEASTKKEYSARTFRPRILKKVPDFLTPIPSL 178
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ P + + + + ++ +P G ++G A ME L+ F+ K+L
Sbjct: 179 IRHPYNETLALKTAAPLE-MLTKYHYPQKTLPLYG-GKAGYTAGMECLQK----FIKKKL 232
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCPEAIDTFLEELIV 310
+ Y RN+P LS LSP+LHFGQI+ QR A+ +K + +++D+FLEELIV
Sbjct: 233 RVYKELRNDPTN-NVLSQLSPFLHFGQIAPQRVAIVIKKHGENHESIRDSVDSFLEELIV 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RRELADNFCFY P+YD +G +WA+K+L +H D R+ YT E+ E +T D LWNA Q
Sbjct: 292 RRELADNFCFYTPSYDCFEGFPQWAQKTLDEHRWDPRKFTYTLEELEHGKTHDQLWNACQ 351
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
++++++GK+H ++RMYWAKKILEW+ PEEA+ AIYLND YEIDGRDPNGY G WSI
Sbjct: 352 LDILFHGKLHSWLRMYWAKKILEWSKSPEEAMKAAIYLNDCYEIDGRDPNGYAGIAWSIG 411
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
GVHD+ W ER +FGKIRYMN SG KRKF V YI +
Sbjct: 412 GVHDRAWPERQIFGKIRYMNDSGAKRKFHVKQYIESI 448
>gi|260783748|ref|XP_002586934.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
gi|229272065|gb|EEN42945.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
Length = 426
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/450 (46%), Positives = 273/450 (60%), Gaps = 38/450 (8%)
Query: 22 GSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGF 81
G L + G ++YWM RDQRV+DNWAL+ A A K+ VP+ V F L +FL A R GF
Sbjct: 5 GDLKQNCGGIMYWMSRDQRVQDNWALLFAQRLAMKHKVPLYVCFCLVPKFLDANIRHYGF 64
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI 141
ML+GL +++ + FL P FV E +VTDFSPLR + +
Sbjct: 65 MLKGLEEVEKFPSPDWLCCGFL---------PGFVDEKNIGGVVTDFSPLRTPLKWVHDL 115
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
++ V +VDAHN+VP W AS K EY A+T+RGKI+ L YL ++P + Q
Sbjct: 116 AGKLPSDVPFVQVDAHNIVPCWEASPKQEYGARTIRGKIHNQLSSYLTEFPPVSQHPHPP 175
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+ DW + A+ L+ V E+ W G + +L + F +RLKN+ TDRN
Sbjct: 176 KDKPEPTDWAAARAS-LKVDMTVAEVTWATPGTTGGLRML----ESFCKQRLKNFGTDRN 230
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
NP K RALS LSP++HFGQIS QRC L +K R E++D ++EE I+RREL+DNFCFY
Sbjct: 231 NPNK-RALSNLSPWIHFGQISVQRCILTVKKYRSKYKESVDAYIEEAIIRRELSDNFCFY 289
Query: 322 QPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ YDS+KGA WA+K+LKDHA DKRE++Y++EQ E+A+T D LWNA+Q
Sbjct: 290 NHDKYDSIKGASAWAQKTLKDHAGDKREYLYSREQLEQAKTHDDLWNAAQ---------- 339
Query: 381 GFMRMYWAKKILEWTTGPEEALAI--AIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK 438
+L+ L+I Y DKY +DGRDPNGYVGCMWSICG+HDQGW
Sbjct: 340 ----------VLDINFSCANLLSIWEVQYSIDKYSLDGRDPNGYVGCMWSICGIHDQGWA 389
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
ERPVFGKIR+MNY+GCKRKFDV ++ K
Sbjct: 390 ERPVFGKIRFMNYNGCKRKFDVAQFVTKYK 419
>gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeovibrioides DSM 265]
gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeovibrioides DSM 265]
Length = 452
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/446 (46%), Positives = 281/446 (63%), Gaps = 17/446 (3%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
++KRGPV+YWM RDQRV+ N AL+ + +A P+ V F L F+GA RQ FML
Sbjct: 14 EEKRGPVIYWMSRDQRVQHNRALLFSQMKAKALGQPLRVVFTLASSFIGATYRQYHFMLE 73
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPN-----FVRECGASLLVTDFSPLREIRRCKD 139
GLR ++ + E I F L Q + P + GA +VTD+SPLR R+ K
Sbjct: 74 GLREIELLLGE-LNIGFVLLQCSPQSGGPGKELEGYAGSSGAGCVVTDYSPLRISRQWKQ 132
Query: 140 KICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE 199
+ S V ++EVDAHN+VP AS K EY+A+T R KIN+LL E+L +E
Sbjct: 133 QAA--ASLKVPLYEVDAHNIVPCHAASGKQEYAARTFRPKINRLLGEFLQPLQAVEAMPH 190
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+ Q ++W + A L V I W + GE AA E L+ F++++L Y
Sbjct: 191 R--AELQKVNWREVFAN-LSVDRTVEPIDWLKPGERAASEHLRR----FISEKLPRYSEL 243
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
RN+P S LS YLHFGQ+SA + ALE + + E+ FLEELIVRREL+DN+C
Sbjct: 244 RNDPTA-EGTSLLSAYLHFGQLSAAQVALEVQSS-GAPEESKAAFLEELIVRRELSDNYC 301
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+Q YD+ +G WAR+SL+ H+ D RE +Y+ ++FE A T D LWNA+Q E+++ G++
Sbjct: 302 AHQEQYDAYEGLPGWARQSLEQHSLDPRETLYSPQEFETAATHDRLWNAAQKELLHTGRI 361
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
HG+MRMYWAKKILEW+ P EA A++LND+Y +DGRDPNGY G WSI G+HD+ W E
Sbjct: 362 HGYMRMYWAKKILEWSPSPREAFETALWLNDRYALDGRDPNGYSGVAWSIGGLHDRPWFE 421
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIA 465
RPV+GKIRYMN SGC+RKF+V+GYIA
Sbjct: 422 RPVYGKIRYMNASGCRRKFNVEGYIA 447
>gi|428177800|gb|EKX46678.1| hypothetical protein GUITHDRAFT_162898 [Guillardia theta CCMP2712]
Length = 505
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/429 (46%), Positives = 272/429 (63%), Gaps = 44/429 (10%)
Query: 10 AVQPGRIRVLKQGSLDK--KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
AV P R R + +++ K PVVYWM RDQRV+DNWA+++A QA + P+AV FNL
Sbjct: 119 AVLPERTRAINHKNVESCPKGKPVVYWMSRDQRVQDNWAMLYAQQQALEAGAPLAVCFNL 178
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
D FLGA RQ GFMLRGL+ ++ ++E I FFL +G+ IP FV++ L
Sbjct: 179 VDSFLGAGLRQFGFMLRGLKEVEEELKEL-NIPFFLLRGDCVKTIPKFVKDNNVGL---- 233
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
VVPVWVAS+K E A+TLR KI++LLP++
Sbjct: 234 -------------------------------VVPVWVASDKQEVGARTLRPKIHRLLPKF 262
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
++P + W + D+++ + + L+ +PE+ W + G A +E L
Sbjct: 263 HQNFPAVMSHPHPWKTSPPPTDFEAALKS-LKCDESIPEVTWAKPGSAAGLENL----SK 317
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL ++ KN+ T RN+P + LS +SP+LHFGQ++ RCALEA+ K+ E+ +++EE
Sbjct: 318 FLMQKFKNFNTKRNDPSE-EVLSDMSPWLHFGQVAPARCALEAKSFSKMHSESYASYIEE 376
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
L+VRREL+DNFC Y YDSL+G WA+++LK HA DKR H+Y+ + E+A+T D LWN
Sbjct: 377 LVVRRELSDNFCHYNKKYDSLEGCAGWAQETLKVHAGDKRPHVYSLAKLEEAKTHDDLWN 436
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A+Q+E+V+ GKMHGFMRMYWAKKILEWT+ PEEAL AI LNDKY +DGRDPNG+VGCMW
Sbjct: 437 AAQLELVHRGKMHGFMRMYWAKKILEWTSSPEEALKFAILLNDKYNLDGRDPNGFVGCMW 496
Query: 428 SICGVHDQG 436
SI GVHD G
Sbjct: 497 SIGGVHDMG 505
>gi|357633977|ref|ZP_09131855.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
gi|357582531|gb|EHJ47864.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
Length = 462
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/455 (45%), Positives = 271/455 (59%), Gaps = 9/455 (1%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P RIR L G K GPVV WM RDQR DNWAL+HA A P+ F L
Sbjct: 3 VHPARIRPL--GFTPPKPGPVVLWMGRDQRADDNWALLHAAALAKAAGAPLFALFALPPD 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A AR F+LRGL ++ + + I L G+ +P F+R A + VTDF P
Sbjct: 61 FPPATARHADFLLRGLAAVETALRD-HGIPLALVPGDPAVAVPAFLRRVRAGVCVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R ++ + + EVDAHNVVP +VAS K EY+A T R KI KLLPE+L
Sbjct: 120 LRPGRAAREAVATAPVWDGALLEVDAHNVVPAFVASAKREYAAATFRPKILKLLPEFLEP 179
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P L +DW++ A ++ + P G G +AA E L FL
Sbjct: 180 FPDLPAFAAGNLAGFAPVDWEAARAGLVLDPSVAPVAG-ITPGPEAAREALAA----FLA 234
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
RL Y RN+P A S LSP+ H G ++ QR AL+A +A+K P + FLEEL+V
Sbjct: 235 DRLPAYADRRNDP-NAGATSTLSPWFHHGHLAPQRAALDALEAKKRAPAGAEAFLEELVV 293
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RRELADN+C ++P YD+L WA+K+L HA+D R + YT +FE A T LWNA++
Sbjct: 294 RRELADNYCLHEPAYDTLAALPAWAQKTLGAHAADPRPYRYTAREFETAATHSALWNAAE 353
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
++V G++HG+MRMYWAKKILEW+ PE ALA A+ LND+Y +DG DP+G G +WS+
Sbjct: 354 RQLVRQGRLHGYMRMYWAKKILEWSATPEAALATALSLNDRYALDGSDPSGVAGVLWSVG 413
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G+HD+ W RPVFG+IRYMN GC+RKFDVD YIA
Sbjct: 414 GLHDRPWASRPVFGQIRYMNARGCRRKFDVDAYIA 448
>gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
Length = 450
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/453 (46%), Positives = 277/453 (61%), Gaps = 18/453 (3%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ L Q L GP++YWM R+QRVRDNW L+HA + A + + V V F L FLGA
Sbjct: 7 RLYRLNQAPLAA--GPILYWMSREQRVRDNWGLLHAREMAGQEHALVVV-FCLAPAFLGA 63
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
RQ FML GL ++ ++ I F L QG+ IP E GA +VTDF PLR
Sbjct: 64 TLRQYDFMLSGLAQVEGDLA-ALGIPFVLLQGDPGQEIPRLAAELGAGGVVTDFDPLRVK 122
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ + + + V+ EVD HNVVP S K EY+A+T+R KI++L+ EYL ++P L
Sbjct: 123 QGWQGAAAHALP--VSFIEVDGHNVVPARQVSPKQEYAARTIRPKIHRLIGEYLEEFPPL 180
Query: 195 EQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
E + + W + A + GA P GEDAA + L D F+
Sbjct: 181 EPQVAPAPPCAATARAAHWGEVRAGLAVDGAVGPVS--LVPGEDAAHDAL----DRFVAD 234
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL Y RN+P S LS Y HFGQ++ QR AL A + + E +LEEL+VR
Sbjct: 235 RLHVYAGQRNDP-NADGTSRLSAYFHFGQLAPQRAALAAAASGR--GEGQAAYLEELVVR 291
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELADNFC + P YDSL GA WA K+L +H +D R H YT+E FE+A+T LWNA+Q
Sbjct: 292 RELADNFCLHNPQYDSLAGAPAWALKTLGEHRADPRAHCYTRETFEQARTGSRLWNAAQN 351
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
E+ G MHG+MRM+WAKKILEW+ PEEA A A+ LND+Y++DGRDPNGYVG +WS+ G
Sbjct: 352 ELRQTGFMHGYMRMFWAKKILEWSATPEEAHATALALNDRYQLDGRDPNGYVGILWSLAG 411
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+HD+ W+ RPVFG +R+MN +GC+RKFDVD YI
Sbjct: 412 LHDRPWQTRPVFGSVRFMNENGCRRKFDVDKYI 444
>gi|294892053|ref|XP_002773871.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
gi|239879075|gb|EER05687.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
Length = 480
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/436 (44%), Positives = 264/436 (60%), Gaps = 8/436 (1%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M R+ R DNWAL++A + A + P+ V +NL +LG RQ F + GLR+L +N+
Sbjct: 1 MSREIRSMDNWALLYAQNLALEGKQPLLVVYNLAIGYLGGGLRQHVFKVGGLRVLAKNLR 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHE 153
+ + + + V G S +VTDF+PL+ + +D + +
Sbjct: 61 DKGISFRVDYSKDFPKALSKMVTMLGCSHVVTDFTPLKVNKAWEDAFIKEAERLGIRFDQ 120
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
VDAHN+VP WVAS+KLEY+A+T+R ++ + Y ++P L + + G I ++
Sbjct: 121 VDAHNIVPCWVASDKLEYAARTIRPRLWRNWDTYSTEFPTLHKHPYHYDGAHFEITSEAC 180
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF-----LTKRLKNYPTDRNNPLKPRA 268
+L + G + G +VL G G K +K Y RN+P K A
Sbjct: 181 FDMLLSDNEQQLLAG-LDHGVKPVTKVLPGEDAGLEHLYTFIKNMKGYSQFRNDPTK-NA 238
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
+S LSPY H+G +S QR +E KA+ + D F+EE +RRELADNFC+Y NYD
Sbjct: 239 ISDLSPYFHYGMVSPQRAVMEVAKAKSIPKPDRDAFIEEAFIRRELADNFCYYNENYDRF 298
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
+G WA+K+L+DH +DKR+++Y+ Q EKA T D LWNA Q +M+ +GKMHG++RMYW
Sbjct: 299 EGFHNWAQKTLQDHEADKRKYVYSLSQLEKASTHDELWNACQNQMLKSGKMHGYLRMYWG 358
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
KKILEWT P +AL AIYLNDKYE+DGRDPNGYVGC WSI G+HDQGW ERP+FGKIRY
Sbjct: 359 KKILEWTENPRQALKFAIYLNDKYELDGRDPNGYVGCAWSIGGIHDQGWAERPIFGKIRY 418
Query: 449 MNYSGCKRKFDVDGYI 464
M Y GCKRKFD+ YI
Sbjct: 419 MTYDGCKRKFDIQKYI 434
>gi|294942633|ref|XP_002783619.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
50983]
gi|239896121|gb|EER15415.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
50983]
Length = 506
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/495 (43%), Positives = 289/495 (58%), Gaps = 32/495 (6%)
Query: 7 PSTAVQPGRIRVLKQGSLD-KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
P ++V P RIRVL Q GPV+YWM R+ R RDNWALIHA + A ++ P+ V +
Sbjct: 2 PQSSVSPDRIRVLNQPVTGLTSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVY 61
Query: 66 NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRE----CGA 121
NL +LG RQ F + GL+++ N+ + L F EA P F+ + G
Sbjct: 62 NLAVGYLGGGLRQHAFKVGGLKVVAANLSQ----LNIPFAIEASPKFPAFLADITERVGC 117
Query: 122 SLLVTDFSPLR---EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
+VTDF+PLR E K R+ + VDAHNVVP WV S+K+E +A T+R
Sbjct: 118 KYVVTDFTPLRLNKEWVAAFTKHAKRLD--IRFELVDAHNVVPCWVTSDKMERAAVTIRP 175
Query: 179 KINKLLPEYLIDYPMLEQ-------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWC 230
K+ E+ YP L++ + T T ID ++ K E V I W
Sbjct: 176 KLWHHFDEFCTKYPRLKRHPYTISDDVHFHTVTTSEIDALLTNEEIVGKLDEAVKPIDWL 235
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
GEDA +++ G K + NY T RNNP P S LSPY H+G +S QR +A
Sbjct: 236 TPGEDAGLQLALG-----YVKHMPNYSTQRNNPTNP-IQSDLSPYFHYGFVSPQRVIYDA 289
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHI 350
+ + E D F+E+ ++RRELADNFC+Y NYD +G +W + +L++HA D RE++
Sbjct: 290 YNSTDINEEDRDEFIEQCMIRRELADNFCYYNDNYDKFEGFPDWGQHTLREHAKDDREYL 349
Query: 351 YTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLND 410
Y+ EQ EKA T D LWNA+Q +MV GK+HG+MRMYW KKILEWT PEEAL +IYLND
Sbjct: 350 YSLEQLEKADTHDRLWNATQRQMVETGKIHGYMRMYWCKKILEWTRSPEEALEFSIYLND 409
Query: 411 KYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
KYE+DGRDPNGYVG W I G HD+ + ER V+G +RYM+Y+GC+ KFD++ Y+ ++
Sbjct: 410 KYELDGRDPNGYVGIAWCIGGRHDRPFGERNVYGVVRYMSYNGCRGKFDINKYM----KM 465
Query: 471 VGGTKKRRADSLVSG 485
G + RA + S
Sbjct: 466 AGSVEGHRAGKMWSA 480
>gi|374300240|ref|YP_005051879.1| DNA photolyase FAD-binding protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332553176|gb|EGJ50220.1| DNA photolyase FAD-binding protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 465
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/436 (45%), Positives = 272/436 (62%), Gaps = 10/436 (2%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPV+YWM R+ RV DNW L+ A + A +VP+AVA+ L +L A RQ F+L GLR
Sbjct: 20 GPVLYWMHREHRVNDNWGLLRARELAVDRDVPLAVAYGLAPDYLEAGLRQYAFLLAGLRE 79
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
++ +E I FFL G+ + IP+ R ++TDF PLR R +I V
Sbjct: 80 VEHGLE-AIGIPFFLLLGDPAEVIPDLARYLAVGAIITDFDPLRIKRGWLKRIAAEVQ-- 136
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
+ + EVD+ N+VP SEK E++A+T R KI++LLPE+L P L+ W +
Sbjct: 137 IAVEEVDSRNIVPCRAVSEKKEWAARTFRPKIHRLLPEFLTAIPTLKPQTVPWNLDWPAN 196
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
DW + + L+ ++V + SGE AA +L F +RL Y RN+P A
Sbjct: 197 DWSQAMDS-LKVSSDVGRLSGPRSGELAAGALLAE----FTAERLSGYAVGRNDP-NGGA 250
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
S LS +LHFG +SAQR AL +A E D FLE+L+VRRELA+NFC ++P YDS
Sbjct: 251 TSRLSAHLHFGMLSAQRVALVVIQA-DAPQEDKDAFLEQLVVRRELAENFCLHEPAYDSA 309
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
+ +WAR++L H D R ++Y++++ E+A T DPLWNA+Q EM+ G MHG++RMYWA
Sbjct: 310 ESFPDWARRTLDAHQGDPRPYLYSRDELEQACTHDPLWNAAQREMLATGYMHGYLRMYWA 369
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
KKILEW+ PEEA+A+A+ LND++E+DGRDPNGY G W+I GVHD+ W ER VFG +R
Sbjct: 370 KKILEWSKSPEEAMAVAVRLNDRWELDGRDPNGYAGLAWAIGGVHDRPWPERSVFGTVRS 429
Query: 449 MNYSGCKRKFDVDGYI 464
M++ G + KFDV YI
Sbjct: 430 MSFRGARSKFDVQAYI 445
>gi|256071674|ref|XP_002572164.1| DNA photolyase [Schistosoma mansoni]
gi|353229929|emb|CCD76100.1| putative DNA photolyase [Schistosoma mansoni]
Length = 490
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/448 (45%), Positives = 277/448 (61%), Gaps = 28/448 (6%)
Query: 28 RGPVVYWMFRDQRVRDNWA-----LIHAVDQANKNNVPVAVAFNLFDQFLGAKAR--QLG 80
+G V+YWM RDQRV+ N + V +K + +A ++ G K R
Sbjct: 54 QGGVLYWMSRDQRVQGNAIQGYTFFVFLVLLISKEIIFIAQPEDISS---GCKHRWSDEN 110
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDK 140
+ +++N FL++ ++ + + LVTDF PLR R K
Sbjct: 111 ALFNQTDRIEKN---------FLYETYVAKSVVDLAKLLNVGCLVTDFCPLRAPRSWVKK 161
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI-- 198
+ + + D++ EVDAHN+VPVW SEK EYSA+T+R K+ + P++L D+P + +
Sbjct: 162 VTDELPDNIPFCEVDAHNIVPVWCGSEKREYSARTIRSKLFQQSPKFLTDFPPIIKHTCS 221
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+K T ++W+SI++ + + P + W G A +EVL F++KRLK +
Sbjct: 222 DKITVLPPPVNWESILSDYVGDKSVKP-VDWAVPGTQAGLEVLYE----FISKRLKKFDP 276
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
RN+P P ALSGLSP+LHFGQI+ QR LE +K + D F+EE RRELA+NF
Sbjct: 277 HRNDPAHP-ALSGLSPWLHFGQIAPQRAVLEVVAVQKHFGRSADIFIEECFNRRELAENF 335
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
CF+ P YDS+KGA++WAR+SL H++DKR+ Y+K Q E AQT D LWNA+Q ++V GK
Sbjct: 336 CFHTPFYDSIKGAYDWARESLMTHSTDKRDPAYSKTQMETAQTGDDLWNAAQRQLVLKGK 395
Query: 379 MHGFMRMYWAKKILEWTT-GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
MH F+R YWAKKILEW GPE A+ IAIYLND+Y +DG DPNGYVG MW+ICGVHDQGW
Sbjct: 396 MHWFLRQYWAKKILEWCAEGPESAIQIAIYLNDRYSLDGTDPNGYVGIMWAICGVHDQGW 455
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYIA 465
ERP+FGKIRYMNY GC RKF V +++
Sbjct: 456 PERPIFGKIRYMNYKGCLRKFSVSTFVS 483
>gi|239905196|ref|YP_002951935.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
gi|239795060|dbj|BAH74049.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
Length = 449
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/464 (44%), Positives = 269/464 (57%), Gaps = 29/464 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P R+R L + ++ GPVVYWM RDQR DNWAL+ A D A + P+ VAF L
Sbjct: 3 VHPARVRPLAEKP--RRAGPVVYWMSRDQRAEDNWALLAAADLARETGAPLHVAFALAPG 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ GA R FMLRGL + + + F L G+ P F+R A VTDF P
Sbjct: 61 YPGASLRHYDFMLRGLAETEAALRAR-GVPFHLLLGDPAAVAPEFLRAIAAGACVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+R K + + + EVDAHNVVP VAS + EY+A T R KI+K L E+L
Sbjct: 120 MRVKTLWKRAVAEAFAGPLL--EVDAHNVVPCVVASPRREYAAATFRPKIHKRLQEFLEP 177
Query: 191 YP---------MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
+P ++ P W R S+ D+ VP+I
Sbjct: 178 FPELPAFPDVALVATPPVDWGAARASLSVDAF-------PGPVPDIV-------PGPAAA 223
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
+ + D F +RL Y RN+P A+SGLSPY HFGQ++ QR ALE AR
Sbjct: 224 RAALDAFTAERLPGYAARRNDP-NAGAVSGLSPYFHFGQLAPQRAALEVLAARAGHVADA 282
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
D +LEEL+VRREL+DN+C Y PNYD +WARK+L HA D+REH YT QFE A +
Sbjct: 283 DAYLEELLVRRELSDNYCHYTPNYDRYDALPDWARKTLDAHAGDEREHRYTPAQFEAAAS 342
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+ LWNA+Q E+V G++HG+MRMYWAKKILEW+ P +AL A+ LND+Y +DGRDPNG
Sbjct: 343 HEALWNAAQRELVATGRIHGYMRMYWAKKILEWSPSPRQALDTALSLNDRYALDGRDPNG 402
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
VG +WS+ G+HD+ W RPV+G+IRYMN GC+RKFD + YIA
Sbjct: 403 VVGVLWSVGGLHDRPWATRPVYGQIRYMNERGCRRKFDANAYIA 446
>gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273]
gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM
273]
Length = 495
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 222/487 (45%), Positives = 281/487 (57%), Gaps = 66/487 (13%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPV+YWM RDQRV N AL +A +A + P+ VAF L F+GA RQ FMLRGL
Sbjct: 18 GPVIYWMSRDQRVEQNRALHYARFRAVADGAPLIVAFTLSPSFIGATFRQYDFMLRGLME 77
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
++R + E +I F L +G+ + I F G+ +VTD+SPLR RR K +
Sbjct: 78 VERRLRE-LEIGFVLLEGDPAEAIVRFRESIGSGCVVTDYSPLRISRRWKATAAAALP-- 134
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ--PIEKWTGTRQ 206
V EVDAHN+VP +AS K EYSA+T R K+N+LL E+LI P +E+ E W T
Sbjct: 135 VLFIEVDAHNIVPCLMASPKQEYSARTFRPKVNRLLGEFLIALPPVERVPASEPWAPT-- 192
Query: 207 SIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
DW+ + A R E P + + GE AA+ L + F+ +RL Y RN+P
Sbjct: 193 --DWERVRA---RLPVERPAGTVRHPQPGEAAAIRHL----ETFIRERLAWYGERRNDP- 242
Query: 265 KPRALSGLSPYLHFGQISAQRCAL----------------------------EARKARKL 296
A SGLSPYLHFG I A A+ E R+A +
Sbjct: 243 NADATSGLSPYLHFGHIWAGTVAIAVRGVMNVVNSPSPEGWEAIGVVNSTSPEGREASGV 302
Query: 297 C----PEAIDT---------------FLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
PE + FLEELIVRREL+DN+C Y YDS G WA+
Sbjct: 303 VNSTSPEGWEATGVVNSPSPEESKAAFLEELIVRRELSDNYCAYNSRYDSFDGLPIWAQD 362
Query: 338 SLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTG 397
SL HA+D RE IYT E+FEKA T DPLWNA+Q E++ G +HG+MRMYWAKKILEW+
Sbjct: 363 SLARHAADLREAIYTPEEFEKAVTHDPLWNAAQQELLRTGSIHGYMRMYWAKKILEWSPS 422
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
P EA A++LND+Y +DGRDPNGY G WSI G+HD+ W ERPV+GKIRYMN +GC+RK
Sbjct: 423 PREAFETAVWLNDRYALDGRDPNGYAGVAWSIGGLHDRPWFERPVYGKIRYMNAAGCRRK 482
Query: 458 FDVDGYI 464
FDV+ YI
Sbjct: 483 FDVERYI 489
>gi|294942625|ref|XP_002783615.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
gi|239896117|gb|EER15411.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
Length = 506
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 212/504 (42%), Positives = 289/504 (57%), Gaps = 36/504 (7%)
Query: 7 PSTAVQPGRIRVLKQGSLD-KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
P ++V P RIRVL Q + GPV+YWM R+ R RDNWALIHA + A ++ P+ V +
Sbjct: 2 PQSSVSPDRIRVLNQPATGLTSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVY 61
Query: 66 NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGA 121
NL +LG RQ F + GL+++ N+ + L F E P + G
Sbjct: 62 NLAVGYLGGGLRQHAFKVGGLKVVAANLSQ----LNIPFAIETSPKFPALLADITERVGC 117
Query: 122 SLLVTDFSPLR---EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
+VTDF+PLR E K R+ + VDAHNVVP WV S+K+E +A T+R
Sbjct: 118 KYVVTDFTPLRLNKEWVAAFTKHAKRLD--IRFELVDAHNVVPCWVTSDKMERAAVTIRP 175
Query: 179 KINKLLPEYLIDYPMLEQ-------PIEKWTGTRQSID---WDSIIAAVLRKGAEVPEIG 228
K+ E+ YP L++ + T T I+ + I L K E I
Sbjct: 176 KLWHHFDEFCTKYPRLKRHAYTISDDVHFHTVTTSEIEALLTNDEIVGKLDKAVE--PID 233
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
W GEDA +++ G K L NY T RNNP P S LSPY H+G +S QR
Sbjct: 234 WLTPGEDAGLQLALG-----YVKNLPNYSTQRNNPTNP-IQSDLSPYFHYGFVSPQRVIY 287
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
+A + + E D F+E+ ++RRELADNFC+Y NYD +G +W + +L++HA D RE
Sbjct: 288 DAYNSTDINEEDRDEFIEQCMIRRELADNFCYYNDNYDKFEGFPDWGQHTLREHAKDDRE 347
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYL 408
++Y+ EQ E A T D LWNA+Q +MV GK+HG+MRMYW KKILEWT PEEAL +IYL
Sbjct: 348 YLYSLEQLENADTHDRLWNATQRQMVETGKIHGYMRMYWCKKILEWTKSPEEALEFSIYL 407
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
NDKYE+DGRDPNGYVG W I G HD+ + ER V+G IRYM+Y+GC+ KFD++ Y+
Sbjct: 408 NDKYELDGRDPNGYVGIAWCIGGRHDRPFGERNVYGVIRYMSYNGCRGKFDINKYM---- 463
Query: 469 RIVGGTKKRRADSLVSGKEKELCG 492
++ G + RA + + ++ G
Sbjct: 464 KMAGSVEGHRAGKMWAAAIQQSVG 487
>gi|452853146|ref|YP_007494830.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio piezophilus]
gi|451896800|emb|CCH49679.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio piezophilus]
Length = 445
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/449 (44%), Positives = 279/449 (62%), Gaps = 14/449 (3%)
Query: 17 RVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA 76
R+ + D GP++YWM R+QRV+DNW L+HA + A ++ P+ V F L FLGA
Sbjct: 7 RIHRLNDADMSAGPILYWMSREQRVQDNWGLLHARELAGEDR-PLIVLFCLVPGFLGATL 65
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRR 136
RQ FML GL ++ ++ I F L G+ E+ + V E G +VTDF PLR +
Sbjct: 66 RQDDFMLNGLAEVENDLA-ALGIAFLLRLGDPEEEVIRCVLEKGVGAVVTDFDPLRIKQG 124
Query: 137 CKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
+ ++ + + V + EVD HNVVP S+K EY+A+TLR KI++L E+L D+P LE
Sbjct: 125 WQKEVASTLR--VPLIEVDGHNVVPARSVSDKQEYAARTLRPKIHRLSSEFLEDFPRLE- 181
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
P+ +DW S+ ++ LR V + GE AA L F+ L Y
Sbjct: 182 PLVCSASPADPVDWHSLRSS-LRMDETVSPVALV-PGESAAHAALSA----FVDHGLHGY 235
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
RN+P+ A S LS + HFG ++ QR AL + K +A+ +LEE+IVRREL+D
Sbjct: 236 AERRNDPVA-EATSRLSAFFHFGHLAPQRAALAVAGSGKGEGQAV--YLEEVIVRRELSD 292
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
NFC Y YDSL GA WA K+L +H SD R +Y+ E+FE A+T PLWNA+Q +++ +
Sbjct: 293 NFCLYNIRYDSLHGAPNWALKTLDEHRSDPRPFLYSHEEFEAARTHSPLWNAAQTQLLRS 352
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
G MHG+MRM+WAKKILEW+ PE A A + LND+Y++DGRDPNGYVG +WS+ G+HD+
Sbjct: 353 GFMHGYMRMFWAKKILEWSPDPESAHATVVTLNDRYQLDGRDPNGYVGALWSVAGLHDRP 412
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
W+ RP++G +RYMN +GC+RKFD YI+
Sbjct: 413 WQTRPIYGSVRYMNSNGCRRKFDTKAYIS 441
>gi|156392837|ref|XP_001636254.1| predicted protein [Nematostella vectensis]
gi|156223355|gb|EDO44191.1| predicted protein [Nematostella vectensis]
Length = 382
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/388 (48%), Positives = 258/388 (66%), Gaps = 8/388 (2%)
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI 141
M++GL+ +++ ++E +I F L G+ +P FV+ G +V DF PLR + + +
Sbjct: 1 MIKGLQEVEKELKEL-EISFHLLLGDPGKVLPEFVKSAGIGGIVVDFCPLRLPTQWVNDV 59
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
V V + +VDAHN+VP W AS KLEY A+T+R KI+K+L E+L ++P + +
Sbjct: 60 VKAVPKDVPVCQVDAHNIVPCWHASPKLEYGARTIRPKIHKVLTEFLTEFPPVIKHSHVS 119
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
++ DWD++ + V E+ W + G + +L + F RLK + + RN
Sbjct: 120 GEKTKTTDWDAV-DTFIEVDRSVGEVDWAKPGTAEGLFML----ESFCKDRLKYFHSSRN 174
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
+P K RALS LSP+ H GQIS QR L R R E++++F+EE I+RREL+DNFC+Y
Sbjct: 175 DPTK-RALSNLSPWFHTGQISPQRAILRVRDFRSKFRESVESFIEECIIRRELSDNFCYY 233
Query: 322 Q-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
YDS++G EWARK+L DHA DKRE++Y + + EKAQT D LWNA+Q ++V GK+H
Sbjct: 234 NNEKYDSIEGTNEWARKTLNDHAKDKREYLYARGKLEKAQTHDDLWNAAQRQLVREGKLH 293
Query: 381 GFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
GF+RMYWAKKILEWT PE AL+ AIY NDKY +DG DPNGYVGCMWS+CG+HDQGW ER
Sbjct: 294 GFLRMYWAKKILEWTDSPETALSDAIYFNDKYALDGIDPNGYVGCMWSVCGIHDQGWAER 353
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
PVFGKIRYMNY GC+RKF V ++ K
Sbjct: 354 PVFGKIRYMNYKGCQRKFAVAEFVKRYK 381
>gi|256828229|ref|YP_003156957.1| deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
4028]
gi|256577405|gb|ACU88541.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
4028]
Length = 452
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/454 (45%), Positives = 276/454 (60%), Gaps = 14/454 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P R+ +L+ L + GPV+YWM RD R DNW L +A QA K+ PVAV F L
Sbjct: 1 MNPRRVNMLRNAPLGQ--GPVLYWMHRDFRAADNWGLTYARLQALKSGQPVAVIFCLAPD 58
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A A F+L GL + + I FF G + NF R ASL+VTDF P
Sbjct: 59 FAEATAVHFNFLLDGLTKTAQTLRRQ-NIPFFALSGIPGLEVANFARTLKASLVVTDFDP 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + + + + +V HEVD+ N+VP V S++ E+ A+TLR KI +LL E+L +
Sbjct: 118 LRIKAQWHKDLLSAWNQAV--HEVDSRNIVPARVVSDRREFMARTLRPKIKRLLGEFLDE 175
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P+L W + D+ S+ + G + E GE A ++L FL
Sbjct: 176 FPVLPMHPHPWPTAVSAPDFSSLRHKIRDDGRR--QALRVEPGEQPARDLLCH----FLQ 229
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+L Y +RN+P + S LS +LHFG +SAQR ALE +A L E +D FL+ELIV
Sbjct: 230 NKLPVY-ANRNDPNQ-DVCSSLSAHLHFGMLSAQRAALET-QACGLAGENVDAFLDELIV 286
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL+DNFC + P YD+ +G WA++SL H D R IY+ E+ E A+T DPLWNA+Q
Sbjct: 287 RRELSDNFCLHTPGYDTEEGFPAWAKESLHKHLRDPRPVIYSPEELEAARTHDPLWNAAQ 346
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+M+ +GKMHG++RMYWAKKILEW+ +AL AI LND+Y +DGRD NGY G WSI
Sbjct: 347 TQMLRSGKMHGYLRMYWAKKILEWSLSAADALRTAIRLNDRYSLDGRDSNGYTGIAWSIG 406
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
GVHD+GW ERP+FGKIR+MN +G +RKFDVD ++
Sbjct: 407 GVHDRGWTERPIFGKIRFMNLAGARRKFDVDRFV 440
>gi|358335722|dbj|GAA29131.2| deoxyribodipyrimidine photo-lyase [Clonorchis sinensis]
Length = 518
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 197/490 (40%), Positives = 283/490 (57%), Gaps = 44/490 (8%)
Query: 14 GRIRVLK---QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
R+R LK + + G V+YWM RDQRV+DNWA ++A A K VP+ V F L
Sbjct: 30 ARVRQLKGPDEFPAEANSGGVLYWMIRDQRVQDNWAFLYAQRLALKFQVPLHVCFCLVPC 89
Query: 71 FLGAKARQLGFMLRGLRLLQ---RNIEETFQILFF------------------------- 102
+ R FM+ GL ++ R + F +L
Sbjct: 90 YQADTLRHFSFMVGGLTQVEQECRALNIHFHLLNIADGLSPSTRSQGSKHRWAEEDSQAL 149
Query: 103 ----LFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHN 158
L+ + + + + V+ +VTDFSPLR + + ++ + +VDAHN
Sbjct: 150 QPPDLYGSQVAEQLKSLVQTLNIGCIVTDFSPLRAPTMWIEHVRTQLPPQLPFCQVDAHN 209
Query: 159 VVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPIEKWTGT-RQSIDWDSIIAA 216
+VPVW S+K E+SA+T+R K+ + ++L ++P +++ P T R++++W+ I
Sbjct: 210 IVPVWCGSDKCEFSARTIRPKLYEQTGQFLTEFPPLIKHPFSCSAPTCRKTVNWNKIREN 269
Query: 217 VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
V + W + G AA VL+ F+ +RL+++ RN+P P ALSGLSP+
Sbjct: 270 YW-GDCTVQPVDWAKPGTAAAFYVLRS----FIDERLRDFDAHRNDPANP-ALSGLSPWF 323
Query: 277 HFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWAR 336
HFGQ++ QR LE + ++D F+EE RRELADNFCF+ P YD L+GA +WA+
Sbjct: 324 HFGQMAPQRAVLEVAALQHKYGRSVDVFIEEAFNRRELADNFCFHTPLYDRLQGARQWAQ 383
Query: 337 KSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTT 396
+L HA DKR+ +T+ Q E + T D LWNA+Q ++V GKMHGF+R YWAKKILEW
Sbjct: 384 DTLHKHAEDKRDVAFTRAQLESSGTTDDLWNAAQRQLVQTGKMHGFLRQYWAKKILEWCA 443
Query: 397 -GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCK 455
GPE A+ AIYLND+Y +DG DPNGYVG MW+ICGVHDQGW ER +FGK+RYM Y+GC+
Sbjct: 444 DGPEVAIQWAIYLNDRYSLDGTDPNGYVGIMWAICGVHDQGWPERRIFGKVRYMCYNGCR 503
Query: 456 RKFDVDGYIA 465
R F V +++
Sbjct: 504 RWFSVPTFVS 513
>gi|256077044|ref|XP_002574818.1| DNA photolyase [Schistosoma mansoni]
gi|350646465|emb|CCD58864.1| DNA photolyase, putative [Schistosoma mansoni]
Length = 533
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 195/478 (40%), Positives = 276/478 (57%), Gaps = 40/478 (8%)
Query: 18 VLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR 77
+LK G+ K G V+YWM RDQRV+DNWA + A A K VP+ V F L +F R
Sbjct: 62 ILKSGN---KMG-VLYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCLVPKFQAETLR 117
Query: 78 QLGFMLRGLRLLQRNIEE---TFQILFFLFQGEAED------------------------ 110
FM+ GL+ +++ E F I + + +
Sbjct: 118 HYTFMVEGLKEVEKECRELCIPFHITSAITNSSSNNQPVKTGVKRKLPESVNDYCHADTV 177
Query: 111 --NIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEK 168
++ + ++ S ++TDF PLRE ++ + +++ +VDAHNVVPVW AS+
Sbjct: 178 AQSVLSLIQSVNISCIITDFFPLREPTAWIKQLAELLPENIPFCQVDAHNVVPVWHASDH 237
Query: 169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIG 228
LEY+A+T+R K+++ + ++P L + + IDW+ I+ V +
Sbjct: 238 LEYAARTIRPKLHQKANNLMTEFPPLIRHPYCHQSSLSPIDWNYWISK-FSGDLSVKPVD 296
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
W G + L F+ +RL Y RN+P K LS LSP+ H+GQI+ QR +
Sbjct: 297 WAIPGTSGGLTTLHT----FIYERLPKYADCRNDPTK-NCLSNLSPWFHYGQIAPQRAIM 351
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
E + R +++D F+EE +RREL+DNFC+Y P YDS++GAW+WA+ +L HA DKR
Sbjct: 352 EVKLWRHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSIEGAWKWAQDTLAQHAHDKRN 411
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEW-TTGPEEALAIAIY 407
Y++E A+T D LWNA+Q ++V +GK+HGF+RMYWAKKILEW +GP AL +A+Y
Sbjct: 412 PSYSEEIMISAETKDDLWNAAQHQLVRSGKLHGFLRMYWAKKILEWHESGPSAALKLALY 471
Query: 408 LNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
LND Y +DG DPNG+VG MWSICGVHDQGW ERPVFGKIR M Y GC KF V ++A
Sbjct: 472 LNDHYALDGSDPNGFVGVMWSICGVHDQGWAERPVFGKIRCMTYKGCLGKFSVPTFVA 529
>gi|386391744|ref|ZP_10076525.1| deoxyribodipyrimidine photolyase [Desulfovibrio sp. U5L]
gi|385732622|gb|EIG52820.1| deoxyribodipyrimidine photolyase [Desulfovibrio sp. U5L]
Length = 462
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 211/456 (46%), Positives = 271/456 (59%), Gaps = 11/456 (2%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P RIR L G K GPVV WM RDQR DNWAL+HA A P+ F L
Sbjct: 3 VHPARIRPL--GFNPPKSGPVVLWMGRDQRADDNWALLHAAALAKAAGAPLLALFALPPD 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
AR F+LRGL ++ + + I L G+ +P F+R A + VTDF P
Sbjct: 61 VPPGTARHADFLLRGLGTVEAALRD-HGIPLVLLPGDPAVAVPAFLRRVRAGVCVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R ++ + + EVDAHNVVP + AS K EY+A T R KI KLLPE+L
Sbjct: 120 LRPGRAAREAVAATPAWDGAFFEVDAHNVVPAFAASPKREYAAATFRPKILKLLPEFLEP 179
Query: 191 YPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P L P G +DW++ A ++ A P G G +AA E L FL
Sbjct: 180 FPDLPAFPAGNLAGF-APVDWEAARAGLVLDPAVAPVAG-ITPGPEAAREALAD----FL 233
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
RL Y RN+P A S LSP+LHFG ++ QR AL+A A+K P + FLEEL+
Sbjct: 234 ADRLPVYADRRNDP-NAGATSTLSPWLHFGHLAPQRAALDALAAKKRAPAGAEAFLEELV 292
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRRELADN+C ++P YD+ WARK+L HA+D R ++Y+ +FE A T LWNA+
Sbjct: 293 VRRELADNYCLHEPAYDTFAVLPAWARKTLLAHAADPRPYVYSAREFEAAATHSALWNAA 352
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q +V G++HG++RMYWAKKILEW+ PEEALA A+ LND+Y +DG DP+G G +WS+
Sbjct: 353 QRALVGGGRLHGYLRMYWAKKILEWSATPEEALATALSLNDRYALDGSDPSGVAGVLWSV 412
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G+HD+ W RPVFG+IRYMN GC+RKFDVD YIA
Sbjct: 413 GGLHDRPWANRPVFGQIRYMNERGCRRKFDVDAYIA 448
>gi|288573172|ref|ZP_06391529.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568913|gb|EFC90470.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 448
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 203/459 (44%), Positives = 275/459 (59%), Gaps = 22/459 (4%)
Query: 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
T V P RIR L++GS GPVVYWM RDQRVRDNWAL++A D A N P+ V F L
Sbjct: 6 TRVDPRRIRRLREGS--PGEGPVVYWMSRDQRVRDNWALLYAQDVALAANRPLEVVFCLS 63
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
F+GA R FMLRGL + + + + F + GE ++ +P + ++ ++LVTDF
Sbjct: 64 RDFIGAPIRHYDFMLRGLTETAKELSK-LNVSFKIPLGEPKEKLPLYAKKRDPAVLVTDF 122
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
SPLR + + + +S I +VD HNVVP W S+K EY+A+T+R K+++ E+L
Sbjct: 123 SPLRHQKGWIESVYEYLS--CPIDQVDGHNVVPAWETSDKREYAARTIRPKLHRKFQEFL 180
Query: 189 IDYPMLEQ-PIE-KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+P +++ P E + T S + + +VL E+P G A L+
Sbjct: 181 TAFPEMKKLPYEDRETDRVPSTEELRLDGSVLPVEGEIP-------GSAAGEMRLRS--- 230
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
F+ + L Y DRN+P S LSPY+HFGQISAQ EA A D F+E
Sbjct: 231 -FIARGLSGYDRDRNDP-NLDGTSRLSPYIHFGQISAQTVVREAFLADL---PGSDAFVE 285
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
E +VRRELA+NFC Y+P YD + EW RK+L H SDKR +Y + E+A T D LW
Sbjct: 286 EAMVRRELAENFCLYEPLYDRYEALPEWGRKALDHHRSDKRPWLYGLSELEEAGTHDELW 345
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
NA+Q+ + G++HG++RMYW K +L W+ PEEA + A+YLND+Y +DGRDPNGY G
Sbjct: 346 NAAQLSLRRKGRIHGYLRMYWGKMLLLWSPSPEEAFSRALYLNDRYALDGRDPNGYTGVA 405
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
W I G+HD+ W +RPVFG +R M SGC RKFDV YIA
Sbjct: 406 WCIGGLHDRPWPKRPVFGSVRSMALSGCARKFDVKRYIA 444
>gi|226479206|emb|CAX73098.1| photorepair [Schistosoma japonicum]
Length = 530
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 266/474 (56%), Gaps = 46/474 (9%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
D K G V+YWM RDQRV+DNWA + A A K VP+ V F ++ R FM+
Sbjct: 66 DIKMG-VLYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAETLRHYTFMIE 124
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDN--------------------------IPNFVRE 118
GL+ +++ E DN I + ++
Sbjct: 125 GLKEVEKECRELCIPFHITSATSIPDNKLIKTGIKRKLSESINDYYADKVAQSILSVIQS 184
Query: 119 CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR- 177
S ++TDFSPLRE + + +++ +VDAHN+VPVW AS+ LEY+A+T+R
Sbjct: 185 ANISCIITDFSPLREPSSWIKGLSEVLPENIPFCQVDAHNIVPVWHASDHLEYAARTIRP 244
Query: 178 ---GKINKLLPEY--LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES 232
K N L+ E+ LI +P Q IDWD ++ V + W
Sbjct: 245 SLHQKANTLMTEFPPLIKHPCYHQ------YDLPPIDWDYWMSE-FSGDISVKPVDWIIP 297
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
G ++ + L F+ +RL Y RN+P K LS LSP+ H+GQ++ QR +E +
Sbjct: 298 GTNSGLTTLHK----FIHERLSKYADCRNDPTK-NCLSDLSPWFHYGQVAPQRALIEVKL 352
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
R +++D F+EE +RREL+DNFC+Y P YDS++GAW+WA+ +L HA DKR Y+
Sbjct: 353 WRHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSMEGAWKWAQDTLTQHAHDKRNPSYS 412
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEW-TTGPEEALAIAIYLNDK 411
+E A T D LWNA+Q ++V GK+HGF+RMYWAKKILEW GP AL +A YLND
Sbjct: 413 EETMVSADTKDDLWNAAQRQLVRTGKLHGFLRMYWAKKILEWHEDGPSAALKLAFYLNDH 472
Query: 412 YEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
+ +DG DPNG+VG MWSICGVHDQGW ERPVFGKIR M Y GC RKF V ++A
Sbjct: 473 FALDGSDPNGFVGVMWSICGVHDQGWAERPVFGKIRCMTYKGCLRKFSVPTFVA 526
>gi|237837047|ref|XP_002367821.1| DNA photolyase, putative [Toxoplasma gondii ME49]
gi|211965485|gb|EEB00681.1| DNA photolyase, putative [Toxoplasma gondii ME49]
Length = 631
Score = 363 bits (933), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 207/471 (43%), Positives = 283/471 (60%), Gaps = 29/471 (6%)
Query: 15 RIRVLKQG-SLDKKRGPVVY-WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF- 71
R+R+L +G K G VV ++ RD RV+DNWAL+ A + A N P+ V L
Sbjct: 58 RVRLLTEGIQKPKADGKVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLA 117
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFL----------FQGEAEDNIPNFVRECGA 121
R L F + G R ++ ++ + I F L EA I
Sbjct: 118 FQPTRRHLSFFMGGAREVETELK-SLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQP 176
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVT-IHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
+L V DF+PLR + + + ++ ++ +++VD H VVP WVAS+KLE +A+TLR K+
Sbjct: 177 ALAVCDFNPLRLPTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKL 236
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L+ E+ +P +++ WT T+ +D D I++ L+ P W + G AA+E
Sbjct: 237 MELVKEFATPFPKVQRMTVPWTHTKLFPLDEDRILSE-LKPDPPEPLDSW-KPGTKAALE 294
Query: 240 VLKGSKDGFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-----A 293
+L F T K L Y RN+PL S LSPY+HFG IS QRC LE K A
Sbjct: 295 LLHS----FATPKNLAEYGKSRNDPLA-GVQSDLSPYIHFGHISVQRCLLEVSKLKSTAA 349
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
K E + +F++E++VR +L+DNF F+ P+YD +KGA WA+++L HA DKRE Y
Sbjct: 350 DKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGF 409
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYE 413
E +T D LWNA+Q+++V +GKMHG++RMYWAKKILEWT P+EAL IAI LNDKY
Sbjct: 410 AALEAGKTYDELWNAAQLQLVRDGKMHGYLRMYWAKKILEWTKSPQEALKIAIALNDKYH 469
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+DG DPNG GCMWSICGVHDQG+KERPVFGKIRYMNY GC+RKFDV ++
Sbjct: 470 LDGTDPNGVTGCMWSICGVHDQGFKERPVFGKIRYMNYPGCERKFDVKAFV 520
>gi|9633937|ref|NP_052016.1| gp127L [Rabbit fibroma virus]
gi|6578656|gb|AAF18010.1|AF170722_128 gp127L [Rabbit fibroma virus]
Length = 445
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 188/445 (42%), Positives = 266/445 (59%), Gaps = 24/445 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM+R+ R+RDNW L +A +A + VP+ V L F +R + F+L GLR ++
Sbjct: 20 VVYWMYREHRIRDNWGLYYAQQKALRYRVPLYVCVCL-TPFHLTTSRHMAFLLEGLREVE 78
Query: 91 RN-IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
++ +F F L G +D +P V++ A + DF PLR + + + D
Sbjct: 79 DECVKRSFG--FVLRYGCPKDVLPEEVKKHNARWIFVDFYPLRYPEKDISDVVTALRDVA 136
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ---PIEKWTGTRQ 206
TI +VD+HN+VP W+AS K EYSA+T R KI KLL YL +P + + P++
Sbjct: 137 TIIQVDSHNIVPCWIASLKQEYSARTFRLKIQKLLTTYLTKFPSVIKHPYPVQ------- 189
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
D + +V I +G M L+ FL +L+ Y +N+P
Sbjct: 190 ----DVYVEDFTPTLDDVSPIRGITAGNKGGMRKLRA----FLKHKLRYYHEFKNDP-TV 240
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
A SGLSP+L +G +SAQR LE PE++ TFL+E++VRREL+DNFC+Y YD
Sbjct: 241 DACSGLSPWLRYGHLSAQRVVLETVAYTSTYPESVATFLDEIVVRRELSDNFCYYNKLYD 300
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
S+ WA ++L DH D R ++Y E A+T DPLWN +Q++M+ GKMHG++RMY
Sbjct: 301 SITSTHPWALRTLDDHRQDLRPYLYDTSSLEHARTHDPLWNTAQLQMINEGKMHGYLRMY 360
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
WAKKILEW+ PE AL++ IYLNDKYE+DG DPNGYVGC+W++ G+HD+ WKER VFGKI
Sbjct: 361 WAKKILEWSKTPESALSVCIYLNDKYELDGTDPNGYVGCLWAVAGLHDRAWKERTVFGKI 420
Query: 447 RYMNYSGCKRKFD-VDGYIAYVKRI 470
RYM + ++KF+ + Y Y R+
Sbjct: 421 RYMKFETTEKKFNAIKLYKMYATRL 445
>gi|221505029|gb|EEE30683.1| DNA photolyase, putative [Toxoplasma gondii VEG]
Length = 631
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 206/471 (43%), Positives = 283/471 (60%), Gaps = 29/471 (6%)
Query: 15 RIRVLKQG-SLDKKRGPVVY-WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF- 71
R+R+L +G K G VV ++ RD RV+DNWAL+ A + A N P+ V L
Sbjct: 58 RVRLLTEGIQKPKADGKVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLA 117
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFL----------FQGEAEDNIPNFVRECGA 121
R L F + G R ++ ++ + I F L EA I
Sbjct: 118 FQPTRRHLSFFMGGAREVETELK-SLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQP 176
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVT-IHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
+L V DF+PLR + + + ++ ++ +++VD H VVP WVAS+KLE +A+TLR K+
Sbjct: 177 ALAVCDFNPLRLPTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKL 236
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L+ E+ +P +++ WT T+ +D D I++ L+ P W + G AA+E
Sbjct: 237 MELVKEFATPFPKVQRMTVPWTHTKLFPLDEDRILSE-LKPDPPEPLDSW-KPGTKAALE 294
Query: 240 VLKGSKDGFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-----A 293
+L F T K L Y RN+P+ S LSPY+HFG IS QRC LE K A
Sbjct: 295 LLHS----FATPKNLAEYGKSRNDPVA-GVQSDLSPYIHFGHISVQRCLLEVSKLKSTAA 349
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
K E + +F++E++VR +L+DNF F+ P+YD +KGA WA+++L HA DKRE Y
Sbjct: 350 DKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGF 409
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYE 413
E +T D LWNA+Q+++V +GKMHG++RMYWAKKILEWT P+EAL IAI LNDKY
Sbjct: 410 AALEAGKTYDELWNAAQLQLVRDGKMHGYLRMYWAKKILEWTKSPQEALKIAIALNDKYH 469
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+DG DPNG GCMWSICGVHDQG+KERPVFGKIRYMNY GC+RKFDV ++
Sbjct: 470 LDGTDPNGVTGCMWSICGVHDQGFKERPVFGKIRYMNYPGCERKFDVKAFV 520
>gi|408685123|gb|AFU77559.1| m127L [Myxoma virus]
Length = 445
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/449 (41%), Positives = 270/449 (60%), Gaps = 24/449 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R R L + ++ VVYWM+R+ R+RDNW L +A +A ++ VP+ V L F
Sbjct: 5 RSRTLNECE-ERPTSSVVYWMYREHRIRDNWGLYYAQQKAIRHAVPLYVCVCL-TSFHLT 62
Query: 75 KARQLGFMLRGLRLLQRN-IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
+R + F+L GLR ++ ++ +F F + G E +P V++ A + DF PLR
Sbjct: 63 TSRHVTFLLEGLRDVEDECVKRSFG--FVVRYGRPEVVLPEEVKKRNARWVFVDFYPLRV 120
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + D T+ +VD+HN+VP W+ S K EYSA+T R KI KLL YL +P
Sbjct: 121 PEKDISNVVESLKDVATVIQVDSHNIVPCWITSSKQEYSARTFRLKIQKLLTTYLTKFPN 180
Query: 194 LEQ---PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+ + P++ D + +VP I ++G ++ L+ FL
Sbjct: 181 IGKHPYPVQ-----------DVYVEDYTPVLDDVPPIRDIKAGTKEGLKTLRA----FLK 225
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
L+ Y +N+P RA SGLSP+LH+G +SAQR L+ + P ++ FL+E++V
Sbjct: 226 HTLRYYYAFKNDP-TARACSGLSPWLHYGHLSAQRVVLDTVVYASIYPASVAAFLDEIVV 284
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL+DNFC+Y YDS+ WA ++L +H D R ++Y E A+T DPLWNA+Q
Sbjct: 285 RRELSDNFCYYNKRYDSITSTHPWALRTLDEHRRDTRPYLYDTYSLEHARTHDPLWNATQ 344
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
++MV GKMHG++RMYWAKKILEW+ PE AL++ IYLNDKYE+DG DPNGYVGC+W++
Sbjct: 345 LQMVREGKMHGYLRMYWAKKILEWSETPESALSVCIYLNDKYELDGTDPNGYVGCLWAVA 404
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
G+HD+ WKER VFGKIRYM + ++KF+
Sbjct: 405 GLHDRAWKERTVFGKIRYMKFETTEKKFN 433
>gi|221481951|gb|EEE20317.1| DNA photolyase, putative [Toxoplasma gondii GT1]
Length = 631
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 206/471 (43%), Positives = 283/471 (60%), Gaps = 29/471 (6%)
Query: 15 RIRVLKQG-SLDKKRGPVVY-WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF- 71
R+R+L +G K G VV ++ RD RV+DNWAL+ A + A N P+ V L
Sbjct: 58 RVRLLTEGIQKPKADGKVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLA 117
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFL----------FQGEAEDNIPNFVRECGA 121
R L F + G R ++ ++ + I F L EA I
Sbjct: 118 FQPTRRHLSFFMGGAREVETELK-SLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQP 176
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVT-IHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
+L V DF+PLR + + + ++ ++ +++VD H VVP WVAS+KLE +A+TLR K+
Sbjct: 177 ALAVCDFNPLRLPTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKL 236
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L+ E+ +P +++ WT T+ +D D I++ L+ P W + G AA+E
Sbjct: 237 MELVKEFATPFPKVQRMTVPWTHTKLFPLDEDRILSE-LKPDPPEPLDSW-KPGTKAALE 294
Query: 240 VLKGSKDGFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-----A 293
+L F T K L Y RN+P+ S LSPY+HFG IS QRC LE K A
Sbjct: 295 LLHS----FATPKNLAEYGKSRNDPVA-GVQSDLSPYIHFGHISVQRCLLEVSKLKSTAA 349
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
K E + +F++E++VR +L+DNF F+ P+YD +KGA WA+++L HA DKRE Y
Sbjct: 350 DKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGF 409
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYE 413
E +T D LWNA+Q+++V +GKMHG++RMYWAKKILEWT P+EAL IAI LNDKY
Sbjct: 410 AALEAGKTYDELWNAAQLQLVRDGKMHGYLRMYWAKKILEWTKSPQEALKIAIALNDKYH 469
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+DG DPNG GCMWSICGVHDQG+KERPVFGKIRYMNY GC+RKFDV ++
Sbjct: 470 LDGTDPNGVTGCMWSICGVHDQGFKERPVFGKIRYMNYPGCERKFDVKAFV 520
>gi|9633763|ref|NP_051841.1| m127L [Myxoma virus]
gi|6523982|gb|AAF15015.1|AF170726_131 m127L [Myxoma virus]
gi|170664593|gb|ACB28750.1| m127L [Myxoma virus]
gi|170664766|gb|ACB28922.1| m127L [recombinant virus 6918VP60-T2]
gi|301134653|gb|ADK63767.1| m127L [Myxoma virus]
gi|408684620|gb|AFU77059.1| m127L [Myxoma virus]
gi|408684788|gb|AFU77226.1| m127L [Myxoma virus]
gi|408684954|gb|AFU77391.1| m127L [Myxoma virus]
gi|408685293|gb|AFU77728.1| m127L [Myxoma virus]
gi|408685462|gb|AFU77896.1| m127L [Myxoma virus]
gi|408685628|gb|AFU78061.1| m127L [Myxoma virus]
gi|408685796|gb|AFU78228.1| m127L [Myxoma virus]
gi|408686131|gb|AFU78561.1| m127L [Myxoma virus]
gi|408686300|gb|AFU78729.1| m127L [Myxoma virus]
gi|408686468|gb|AFU78896.1| m127L [Myxoma virus]
gi|408686635|gb|AFU79062.1| m127L [Myxoma virus]
gi|408686803|gb|AFU79229.1| m127L [Myxoma virus]
gi|408686971|gb|AFU79396.1| m127L [Myxoma virus]
gi|408687139|gb|AFU79563.1| m127L [Myxoma virus]
gi|408687307|gb|AFU79730.1| m127L [Myxoma virus]
gi|408687475|gb|AFU79897.1| m127L [Myxoma virus]
gi|408687642|gb|AFU80063.1| m127L [Myxoma virus]
gi|408687810|gb|AFU80230.1| m127L [Myxoma virus]
gi|408687978|gb|AFU80397.1| m127L [Myxoma virus]
gi|408688146|gb|AFU80564.1| m127L [Myxoma virus]
gi|408688315|gb|AFU80732.1| m127L [Myxoma virus]
Length = 445
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/449 (41%), Positives = 270/449 (60%), Gaps = 24/449 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R R L + ++ VVYWM+R+ R+RDNW L +A +A ++ VP+ V L F
Sbjct: 5 RSRTLNECE-ERPTSSVVYWMYREHRIRDNWGLYYAQQKAIRHAVPLYVCVCL-TSFHLT 62
Query: 75 KARQLGFMLRGLRLLQRN-IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
+R + F+L GLR ++ ++ +F F + G E +P V++ A + DF PLR
Sbjct: 63 TSRHVTFLLEGLRDVEDECVKRSFG--FVVRYGRPEVVLPEEVKKRNARWVFVDFYPLRV 120
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + D T+ +VD+HN+VP W+ S K EYSA+T R KI KLL YL +P
Sbjct: 121 PEKDISNVVESLKDVATVIQVDSHNIVPCWITSSKQEYSARTFRLKIQKLLTTYLTKFPN 180
Query: 194 LEQ---PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+ + P++ D + +VP I ++G ++ L+ FL
Sbjct: 181 IGKHPYPVQ-----------DVYVEDYTPVLDDVPPIRDIKAGTKEGLKTLRA----FLK 225
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
L+ Y +N+P RA SGLSP+LH+G +SAQR L+ + P ++ FL+E++V
Sbjct: 226 HTLRYYYAFKNDP-TARACSGLSPWLHYGHLSAQRVVLDTVVYASIYPASVAAFLDEIVV 284
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL+DNFC+Y YDS+ WA ++L +H D R ++Y E A+T DPLWNA+Q
Sbjct: 285 RRELSDNFCYYNKRYDSITSTHPWALRTLDEHRRDTRPYLYDTYSLEHARTHDPLWNAAQ 344
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
++MV GKMHG++RMYWAKKILEW+ PE AL++ IYLNDKYE+DG DPNGYVGC+W++
Sbjct: 345 LQMVREGKMHGYLRMYWAKKILEWSETPESALSVCIYLNDKYELDGTDPNGYVGCLWAVA 404
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
G+HD+ WKER VFGKIRYM + ++KF+
Sbjct: 405 GLHDRAWKERTVFGKIRYMKFETTEKKFN 433
>gi|219118604|ref|XP_002180071.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408328|gb|EEC48262.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 511
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 209/485 (43%), Positives = 294/485 (60%), Gaps = 45/485 (9%)
Query: 15 RIRVLKQGSLDKKRG-PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL------ 67
R RVL + K G VVYWM RD R DNWAL+ A D A +++VP+ V + L
Sbjct: 5 RTRVLTSEGTEPKEGQSVVYWMQRDVRSVDNWALLWARDLAMQHDVPLHVVYALPPPASS 64
Query: 68 ----FDQFLGAKARQL-------GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV 116
D+ L QL F+L GL + + ++E +I ++ ++ + + V
Sbjct: 65 DGSDNDRDLPPALIQLPMTKRHGAFLLGGLECVYKELKE-MKIPLYVCLPDSHEKVGETV 123
Query: 117 REC-----GASLLVTDFSPLREIRRCKDKICNRVSDS--VTIHEVDAHNVVPVWVASEKL 169
E A ++V+DFSP+RE R+ + + + V ++VDAHN+VPVW A++K
Sbjct: 124 CEAILHKYKAKIVVSDFSPIREYRQWMELQAVPILEEAKVPFYQVDAHNIVPVWTATDKR 183
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID---WDSI-IAAVLRKGAEVP 225
+ A+TLR +I+K+ +YL DYP L+ G S+D +D + + L+ V
Sbjct: 184 QVGARTLRPRIHKVYNDYLQDYPDLK-------GNSHSVDQPKFDRVEYESFLQMDESVE 236
Query: 226 EIGWCESGEDAAMEVLKGSKDGFLTKR-LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ 284
+ W + G +A M+ + F +K LK + RN+P++ S +SP+++ G IS Q
Sbjct: 237 SVDWAQPGTEAGMKQFE-----FFSKNGLKIFHEQRNDPVQKHVCSDMSPWINHGHISFQ 291
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHA 343
R AL + K A F+EE ++RREL+DN +Y PN YDSL+ A WAR+SL+ HA
Sbjct: 292 RLALNVKALNKHANGAA-AFIEEGVIRRELSDNMLYYSPNDYDSLETAAGWARESLQLHA 350
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALA 403
SD+RE +Y+ + E+ +T D LWNA+Q++MV +GKMHGFMRMYWAKKILEW+ P AL
Sbjct: 351 SDEREFVYSLSELEEGRTHDDLWNAAQLQMVRDGKMHGFMRMYWAKKILEWSESPVGALR 410
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
A YLNDKYE+DGRDPNG+VG WSI G+HDQGWKER VFGKIRYMNY+GCKRKF V+ Y
Sbjct: 411 TAQYLNDKYELDGRDPNGFVGVGWSIMGIHDQGWKEREVFGKIRYMNYNGCKRKFKVEEY 470
Query: 464 IAYVK 468
+A K
Sbjct: 471 VAQYK 475
>gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
DSM 12260]
gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
DSM 12260]
Length = 464
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 205/455 (45%), Positives = 261/455 (57%), Gaps = 20/455 (4%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P RI L++ ++ GPV+YWM R+QR RD+W L A + A + VP+A F L FL
Sbjct: 15 PERITCLRRAP--RREGPVLYWMGREQRARDHWGLAAAQELAAERRVPLACIFTLSPTFL 72
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
GA R F+LRGLR R + I FL +G+ + F +L VTDF PLR
Sbjct: 73 GAPLRAYAFLLRGLRETARELAAR-DIPLFLLRGDPPEEAARFAIRHRVALTVTDFDPLR 131
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R + R T EVDA NVVP S K E+SA TLR K+ LL +L P
Sbjct: 132 VRRGWTEAFLERTEG--TALEVDARNVVPCRFVSPKREWSAATLRRKLRPLLDRFL---P 186
Query: 193 MLEQPIE----KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
L P+E WT T WD + VPE G A L + F
Sbjct: 187 FLPPPLETHPVPWTDT-PPPSWDPLDLLASGSFEGVPESP-LPPGSAAGQARL----EAF 240
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
L + L Y DRN+PL+ SGLSPYLHFGQIS QR A E +A PE + FLEEL
Sbjct: 241 LREGLPRYARDRNDPLR-EGQSGLSPYLHFGQISPQRAAWEVLRA-DAPPEDREAFLEEL 298
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
+VR ELA+NFC + P YD+++ +WARK+L HASD+R +Y+ + E+ +T DPLWNA
Sbjct: 299 VVRGELAENFCLHTPGYDTVEAFPDWARKTLAAHASDRRPALYSLRELEEGRTHDPLWNA 358
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+Q E+V G+M G++RMYW KK+LEWT PEEAL + LND+YE+DGRDP GY G W
Sbjct: 359 AQRELVLTGRMPGYLRMYWGKKLLEWTPSPEEALRAGVALNDRYELDGRDPKGYAGLAWC 418
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
+ GVHD+ W RPVFG +R M +G RKFDV+ Y
Sbjct: 419 LGGVHDRPWPSRPVFGSVRSMTAAGMARKFDVEAY 453
>gi|218887026|ref|YP_002436347.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757980|gb|ACL08879.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 494
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 210/485 (43%), Positives = 280/485 (57%), Gaps = 30/485 (6%)
Query: 8 STAVQPGRIRVLKQGSLDKK-------RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
S+ V P R+ + G RGPV+YWM R+ R RDNWAL+HA +A + P
Sbjct: 13 SSVVDPRRVVGMHGGPAAHSAPGARPGRGPVLYWMHREHRARDNWALLHAHAEAARLGAP 72
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120
+AV + L + FLGA RQ GF+LRG+ QR++ I + +G + + + R
Sbjct: 73 LAVVWCLANSFLGATIRQFGFLLRGMEETQRHLAAA-GIPLVVLRGNPPEEVVRYARSAN 131
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
A+L+VTDF LR R ++ ++HEVD NVVP VAS K EY+A+TLR KI
Sbjct: 132 AALVVTDFDVLRLKRTWLASAARGLAGVCSLHEVDGRNVVPCRVASPKREYAARTLRPKI 191
Query: 181 NKLLPEYLIDYPMLEQ------------PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIG 228
++LLPE+L P L P W R ++ D +A V +P +
Sbjct: 192 HRLLPEFLTPIPALPPASSVSGASSVPVPDVDWASLRDNLAVDRTVAEV----GPLPGMP 247
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
GEDAA L D F+ RL Y RN+P +SGLSPYLHFG +SAQR AL
Sbjct: 248 DIAPGEDAARAAL----DDFIHARLHRYHL-RNDP-NAHGVSGLSPYLHFGMLSAQRAAL 301
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
A+ + + +FLEELIVRRELADNFC + +YD++ +WA +L H D R
Sbjct: 302 AAQAHLEAPDDCRASFLEELIVRRELADNFCLHAQDYDAVTCFPDWALATLDKHRHDPRP 361
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYL 408
+Y + Q A+TADPLWNA+Q EMV G+MHG++RMYWAK+IL W+ PE+A+ A+ L
Sbjct: 362 ALYDEAQLAAARTADPLWNAAQTEMVCAGRMHGYLRMYWAKQILLWSPTPEDAVRTAVTL 421
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
ND+Y +DGRD NGY G WS GVHD+ W ERPV G IR M Y+G + KFDV YI ++
Sbjct: 422 NDRYFLDGRDSNGYTGIAWSAGGVHDRPWGERPVQGTIRSMTYNGARSKFDVGAYIRRMQ 481
Query: 469 RIVGG 473
+ GG
Sbjct: 482 ALRGG 486
>gi|148368871|ref|YP_001257001.1| DNA photolyase [Spodoptera litura granulovirus]
gi|147883384|gb|ABQ51993.1| DNA photolyase [Spodoptera litura granulovirus]
Length = 466
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 184/456 (40%), Positives = 267/456 (58%), Gaps = 13/456 (2%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R RV+ S + VVYWM RD R+ DNWA ++A A +N P+ V F L
Sbjct: 17 VDINRTRVIHAPSSTLRYTGVVYWMSRDSRIEDNWAFLYAQQIAIQNQAPLHVCFCLVTW 76
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A RQ F+L GL+ +Q+ + + F L G + + ++ ++V DF+P
Sbjct: 77 FCNAGMRQFHFLLEGLKFVQQECKR-LNVSFHLLDGSGDQVLLDWCNRNDVDVIVCDFNP 135
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+ + + +++ +VDAHN++P W + S + R + L YL
Sbjct: 136 TVKPMEWIHNLKKTLPGHMSLTQVDAHNILPCW--RQLSAPSTHSFRKIAVRKLNRYLTQ 193
Query: 191 YPMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P + + + T +DWD+++ + V + W E+G A++ F+
Sbjct: 194 FP--DAKVHPYGTAKFPHVDWDALLQS-RNADTSVEPVTWAEAGYHGAIKTFTK----FV 246
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
R+++Y RN P + S LSP+LHFGQISAQR L + + + IDTF++E
Sbjct: 247 KCRIQSYHELRNKPTEA-VCSNLSPWLHFGQISAQRVILHVKSLTNVKGDNIDTFVDECF 305
Query: 310 VRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
+RRELADNFCFY YDS++ A WA +LK H D+R+++Y+ + FE A T D LWNA
Sbjct: 306 IRRELADNFCFYTKRYDSIEASAPNWALITLKAHEKDRRQYVYSLKVFENADTHDLLWNA 365
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+Q+++V GKMH +MRMYW KKILEW+ + AL AIYLNDKY +DGRDPNGYVGC+WS
Sbjct: 366 AQIQLVREGKMHQYMRMYWCKKILEWSDDAQTALNYAIYLNDKYSLDGRDPNGYVGCLWS 425
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
ICG+HD+ W+E P++GKIRYMNY+GC RKF+V+ YI
Sbjct: 426 ICGLHDRAWREIPIYGKIRYMNYNGCVRKFNVNHYI 461
>gi|226359412|gb|ACO51512.1| photolyase [Strongylocentrotus franciscanus]
Length = 367
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 177/372 (47%), Positives = 239/372 (64%), Gaps = 7/372 (1%)
Query: 54 ANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP 113
A K VP+ V F L +FL R F+L GL+ + + + I F L G A+D +P
Sbjct: 2 ALKQEVPLHVCFCLVPRFLEGTIRHFNFVLEGLKEVSQELH-LLDIPFHLLIGYAKDVLP 60
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
F+ + G +VTDFSPLR R+ + + ++ +VDAHNVVP W AS KLEY A
Sbjct: 61 GFINDHGLGGVVTDFSPLRTSRQWIKDVKEELPKNIPFCQVDAHNVVPCWEASNKLEYGA 120
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+T+R KI K L YL ++P + K + IDW+ A+ L V + W + G
Sbjct: 121 RTIRPKITKQLTTYLTEFPPVICHPHKAKAKAEPIDWEGAYAS-LEVDQTVKPVDWAQPG 179
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
M++L D F+ +RL+ + + RN+P K S LSP++HFGQ+S+QR AL R
Sbjct: 180 TSEGMKML----DSFVKERLRYFSSARNDPTK-SVCSNLSPWIHFGQLSSQRAALIVRLY 234
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
R E++ ++EE I RREL+DNFCFY NYDS++G +WA+K+LKDHA DKRE++Y++
Sbjct: 235 RSRFSESVAGYIEESITRRELSDNFCFYNDNYDSIEGTNDWAKKTLKDHAKDKREYVYSR 294
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYE 413
E E+A+T D LWN++Q +MV GKMHGF+RMYWAKKILEWTT PEEAL IAIYLND+Y
Sbjct: 295 ETLERAKTHDQLWNSAQKQMVREGKMHGFLRMYWAKKILEWTTSPEEALEIAIYLNDRYS 354
Query: 414 IDGRDPNGYVGC 425
+DGRDPNGYVGC
Sbjct: 355 LDGRDPNGYVGC 366
>gi|347732852|ref|ZP_08865923.1| DNA photolyase family protein [Desulfovibrio sp. A2]
gi|347518328|gb|EGY25502.1| DNA photolyase family protein [Desulfovibrio sp. A2]
Length = 450
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 208/449 (46%), Positives = 275/449 (61%), Gaps = 13/449 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWM R+ R RDNWAL+HA +A + P+AV + L D FLGA RQ GF+LRG+ +
Sbjct: 1 MLYWMHREHRARDNWALLHAHAEAARLGAPLAVVWCLADTFLGATIRQFGFLLRGMAETE 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
R++ I + +G + + R GASL+VTDF LR R ++
Sbjct: 61 RHLAAA-GIPLVVLRGNPPEEAVRYARAVGASLVVTDFDVLRVKRAWLASAARGLAGFCP 119
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE-KWTGTRQSID 209
+HEVD NVVP VAS K EY+A+TLR KI++LL E+L+ P+L +WT +D
Sbjct: 120 LHEVDGRNVVPCRVASPKREYAARTLRPKIHRLLAEFLVPLPVLPPAPPVRWTLPVPEVD 179
Query: 210 WDSII--AAVLRKGAEV---PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
W ++ AV R EV P I E GEDAA L F+ RL Y RN+P
Sbjct: 180 WAALRDGLAVDRAVGEVGPLPGIPAVEPGEDAAHAALGD----FVRTRLHRYHL-RNDP- 233
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
+SGLSPYLHFG +SAQR AL A+ E D+FLEELIVRRELADNFC + +
Sbjct: 234 NAGGVSGLSPYLHFGMLSAQRAALAAQARGDAPGECRDSFLEELIVRRELADNFCLHAQD 293
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
YD++ +WAR +L H D R +Y + Q A+TADPLWNA+Q EMV G+MHG++R
Sbjct: 294 YDAITCFPDWARATLDKHRHDARPALYDEGQLAAARTADPLWNAAQTEMVVTGRMHGYLR 353
Query: 385 MYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
MYWAK+IL W+ PE+A+ +A+ LND+Y +DGRD NGY G WS+ GVHD+ W RPV G
Sbjct: 354 MYWAKQILLWSPTPEDAVRVAVALNDRYFLDGRDSNGYTGIAWSMGGVHDRPWGARPVQG 413
Query: 445 KIRYMNYSGCKRKFDVDGYIAYVKRIVGG 473
IR M Y+G + KFDV+ YI ++ + GG
Sbjct: 414 TIRSMTYNGARTKFDVNAYIRRMQALRGG 442
>gi|224002719|ref|XP_002291031.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972807|gb|EED91138.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 468
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 271/473 (57%), Gaps = 25/473 (5%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ-FLGAKARQLGFMLRGLRLLQRNI 93
M RD R DNWAL+ A A + VP+ V + L + R F+L GL+++ +
Sbjct: 1 MLRDVRTVDNWALLFAQSLAVQQKVPLRVVYALPPPPSMALTVRHGTFLLDGLKVVANEL 60
Query: 94 EET---FQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRV--S 146
+E F IL + E I + L V D PLR R+ ++ +
Sbjct: 61 QEASVPFDILCPSSRSEVGKTIHTHCTDASHDALAVVCDMCPLRYPRQWTEEQAVPLLEG 120
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE---QPIEKWTG 203
D + +++VD HN+VPVW+AS K E A+TLR KI+ + +Y +P + E
Sbjct: 121 DDIPLYQVDTHNIVPVWIASPKREVGARTLRPKIHNVFGDYCCQFPKFQGNAHVKESGAE 180
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR---LKNYPTDR 260
+ +DWD + L VP +G +G AME + F + LKN+ + R
Sbjct: 181 GKGGLDWDDY-ESFLNMDHSVPHVGGMNAGHQVAMERF----NNFCSSTQYGLKNFDSLR 235
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N+P S LSP+++ G +S QR AL+ R +K ++EE +VRREL+DNF +
Sbjct: 236 NDPNHQSVCSNLSPWINHGHVSFQRLALDIRALKKHT-NGTAAYIEEGVVRRELSDNFVY 294
Query: 321 YQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
Y P+ YDSL GA +WAR SL HA D+RE++YT ++ EKA+T D LWNA+Q+++V G M
Sbjct: 295 YTPDGYDSLAGAADWARDSLTLHADDERENLYTWKELEKAETHDDLWNAAQLQLVREGGM 354
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
HGFMRMYWAKK+LEWT+ P ALA A YLND+Y DG DPNG+VG WSI G+HD GWKE
Sbjct: 355 HGFMRMYWAKKVLEWTSSPAYALATAQYLNDRYAYDGNDPNGFVGVGWSIMGIHDMGWKE 414
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKEKELCG 492
RP+FGKIRYMNY+GCKRKF +D ++A + G + A +L + L G
Sbjct: 415 RPIFGKIRYMNYAGCKRKFKIDPFVARYQ----GAAQNAAKALTKSGGENLSG 463
>gi|401402998|ref|XP_003881384.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
Length = 636
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 279/471 (59%), Gaps = 29/471 (6%)
Query: 15 RIRVLKQGSLDKKR-GPVVY-WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF- 71
R+R++ +G + K G VV ++ RD RV++NWAL+ A + A N P+ V L
Sbjct: 66 RVRLVTEGIREPKADGKVVICYLQRDLRVQENWALLLAQEAARALNKPLVVIHLLVPGLA 125
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFL----------FQGEAEDNIPNFVRECGA 121
R L F + G R ++ ++ + I F L EA I
Sbjct: 126 FQPTRRHLSFFIGGAREVEAELK-SLNIGFELPIVAKKDPKGRLDEANKKIEEVFAALQP 184
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVT-IHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
+L V DF+PLR + + + ++ +++VD H VVP WVAS K E SA+T+R K+
Sbjct: 185 ALAVCDFNPLRLPTQIVEALARVYGKGLSPLYQVDTHAVVPCWVASNKAETSARTMRPKL 244
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L E+ + +P +E WT + +D D +++AV E P W + G AA+
Sbjct: 245 QAMLKEFAVPFPKVEPHPVPWTSKQLFPLDEDRVLSAVKPDPPE-PLDSW-KPGTKAALR 302
Query: 240 VLKGSKDGFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR---- 294
+L+ F T + + Y RN+PL S LSPY+HFG I+ QRC +E K +
Sbjct: 303 LLQS----FATPQNIAKYGKARNDPLA-DCQSDLSPYIHFGHIAVQRCLMEVSKLKDTTG 357
Query: 295 -KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
+ E + F++E++VR +L+DNF F+ P+YD +KGA +WA+++L+ HA DKRE Y
Sbjct: 358 DRAVHEGVRAFIDEVVVRSQLSDNFVFFNPHYDDIKGAPDWAKQTLEKHAKDKREPQYEF 417
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYE 413
E+ +T D LWNA+Q+++V +GKMHG++RMYWAKK+LEWT P+EAL AI LNDKY
Sbjct: 418 TALEEGKTYDSLWNAAQLQLVRDGKMHGYLRMYWAKKLLEWTKSPQEALKTAIALNDKYH 477
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+DG DPNG GCMWSI GVHDQG+KERPVFGKIRYMNY GC+RKFDV ++
Sbjct: 478 LDGTDPNGVTGCMWSIGGVHDQGFKERPVFGKIRYMNYPGCERKFDVKAFV 528
>gi|397576288|gb|EJK50169.1| hypothetical protein THAOC_30888 [Thalassiosira oceanica]
Length = 627
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 200/487 (41%), Positives = 275/487 (56%), Gaps = 36/487 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-----------------FDQFLG 73
+VYWM RD R DN AL+ A A K VP+ V F L + +
Sbjct: 147 IVYWMMRDCRTVDNHALLFAQGLATKYQVPLRVVFTLPPPPSSAPGEGADGSPPKPEDMS 206
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS 129
R F+L GL+++ +E L L +R C A LV D S
Sbjct: 207 LTLRHGDFLLDGLKVVAEELEAANVPLDVLQPACRTAVGTETIRYCINRNDALALVCDMS 266
Query: 130 PLREIRR-CKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
PLR+ R + + + V +++VDAHN+VPVW AS K E A+TLR KIN + +Y
Sbjct: 267 PLRQPRDWIETQTVPHLGQQVPVYQVDAHNIVPVWRASPKREVGARTLRPKINNVFAKYC 326
Query: 189 IDYPML----EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
+ EK Q DW+ + + P +G+ +G +AAME +
Sbjct: 327 TQFAEFAGNAHLAAEKVDAENQH-DWEQYRRYLRLDESIEPVVGYV-AGHEAAMERFRE- 383
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F + +LKN+ + RN+P + S LSP+++ GQ+S QR ALE R +K +
Sbjct: 384 ---FCSTKLKNFDSMRNDPNQ-DVCSNLSPWINHGQVSFQRLALEVRALKKHT-NGTAAY 438
Query: 305 LEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+EE +VRREL+DNF +Y P+ YDSL+GA +WAR SL+ H++DKRE++YT + E T D
Sbjct: 439 IEEGVVRRELSDNFVYYTPSSYDSLEGAADWARDSLQLHSTDKREYVYTWKVLETGMTHD 498
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
LWNA+Q+++V GKMHGF+RMYWAKK+LEWT P ALA A Y ND+Y +DG DPNG+V
Sbjct: 499 DLWNAAQLQLVREGKMHGFLRMYWAKKVLEWTVSPAYALATAQYFNDRYALDGNDPNGFV 558
Query: 424 GCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA-YVKRIVGGTKKRRADSL 482
G WSI G+HD GWKER VFGKIR+MNY+GC+RKF VD ++A Y K A
Sbjct: 559 GVGWSIMGIHDMGWKERDVFGKIRFMNYAGCRRKFKVDTFVARYRGAKENANKVAPAGEK 618
Query: 483 VSGKEKE 489
V+GK+++
Sbjct: 619 VAGKKRK 625
>gi|402502123|ref|YP_006607781.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus]
gi|284431213|gb|ADB84373.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus]
Length = 395
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 245/390 (62%), Gaps = 13/390 (3%)
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDK 140
F + GL+L+ + ++ I F + G ++ + ++V++ + +V DF+PLR +RR +
Sbjct: 9 FWIEGLKLIHKECKQ-LNITFVVLNGSGDETLVDWVKKYNIAGIVCDFNPLRIVRRWTAR 67
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-LEQPIE 199
+ ++ V ++DAHN+VP WVAS+K E +A+T+R K+ + +L +P+ ++ I+
Sbjct: 68 VKTQLPSDVYFAQIDAHNIVPCWVASQKQEINARTMRNKLKTNMKSFLKPFPLVMKHSID 127
Query: 200 KWT----GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
T IDW ++ + + + W ++G + A L F+ L +
Sbjct: 128 SKARIDPATCDEIDWKKLLES-RDADKNIEPVTWAQAGYNNACVALAK----FIDDNLWH 182
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA-IDTFLEELIVRREL 314
Y RN+P + S +SP+ HFGQIS QR A+ E+ ++T++EE VRREL
Sbjct: 183 YKETRNDP-NADSQSNMSPWYHFGQISVQRVVWYLIVAKMQHFESNVETYIEECFVRREL 241
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
ADNFC+Y NYD +GA +WA+++L HA++ RE+ Y + + E ++T D LWNA+Q ++
Sbjct: 242 ADNFCYYNINYDRFEGAPDWAKETLSLHANEGREYCYNRRELENSETHDILWNAAQTQLK 301
Query: 375 YNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
GKMHG+MR+YWAKKILEW+ P AL AIY NDKY +DGRDPNGY GCMWSICG HD
Sbjct: 302 TQGKMHGYMRIYWAKKILEWSISPTVALINAIYFNDKYSLDGRDPNGYAGCMWSICGTHD 361
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+ W ERP++GKIR+MN+ GCKRKF++D YI
Sbjct: 362 RAWMERPIYGKIRHMNFEGCKRKFNIDCYI 391
>gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
DSM 5219]
gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
DSM 5219]
Length = 457
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 197/447 (44%), Positives = 268/447 (59%), Gaps = 27/447 (6%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM QRV N AL A+ QANK ++P+ V F L ++ A R FML GL +
Sbjct: 21 VLYWMQSSQRVDYNHALEFAIQQANKMDLPLLVLFCL-TKYPQANLRHYTFMLEGLVQTK 79
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+++E+ I F + +G D + F R+ ASLLVTD + R ++ + S S
Sbjct: 80 KSLEK-LGIQFVMLKGNPVDVVHEFARD--ASLLVTDQDYQKLQRGWRENLA--ASISCP 134
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+V+++ +VPV S+K E+SA TLR KI+K L E++ +P + + ID
Sbjct: 135 FAQVESNVIVPVENVSDKEEWSAATLRRKIHKHLDEFV--HPF---ELSALANSSLEIDQ 189
Query: 211 DSI-------IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
DS+ I + V + G A E L F+ RL +Y RN+P
Sbjct: 190 DSLDLNDFEQILNSMDIDRSVKPSPRYKGGIHQAREKLSD----FIAHRLGDYDEKRNDP 245
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
LSG+SPYLHFGQIS AL+ + A+K A ++EEL+VRRELA NF +Y
Sbjct: 246 -NLDFLSGMSPYLHFGQISPLEIALKVQDAKKGGSTA---YMEELVVRRELAMNFVYYDK 301
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+YDSL +WA+K+L +H D R++IYT+E+FE+A+T DP WNA+Q EMV GKMHG+M
Sbjct: 302 DYDSLDCLPDWAKKTLAEHRDDFRQYIYTQEEFEQARTHDPYWNAAQREMVLTGKMHGYM 361
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVF 443
RMYW KKILEWT PE+A IA+YLN+KYE+DGRDPNGY G W G HD+ WKER +F
Sbjct: 362 RMYWGKKILEWTDSPEQAYQIALYLNNKYELDGRDPNGYAGIAWCF-GKHDRAWKERDIF 420
Query: 444 GKIRYMNYSGCKRKFDVDGYIAYVKRI 470
GK+RYMN +G KRKFD GY+ + R+
Sbjct: 421 GKVRYMNANGLKRKFDAGGYVEKITRL 447
>gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
BAA-798]
gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
BAA-798]
Length = 449
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 185/463 (39%), Positives = 267/463 (57%), Gaps = 36/463 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+VY M RDQRV DN+AL+ A +A + +P+ V F L ++ G FML GL +
Sbjct: 1 MVYVMSRDQRVDDNFALLLAQREALERRLPLVVLFVLRERPGGRSREHFLFMLDGLEEVS 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
R ++E I + L QG +RE A+ + DFSPLR R + + S
Sbjct: 61 RRLQE-LGIAWVLRQGSPSRTTLATLRELDAASVYLDFSPLRGARARAELLAREFEGST- 118
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
H VDAHNV+P W S+K E +A T+R K++KLL YL P + + +++ +
Sbjct: 119 -HVVDAHNVIPAWEVSDKQEVAAHTMRSKVHKLLGRYLEAPPRIVRHPYSLADHLETLSF 177
Query: 211 DS---IIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
+ I+ + G + GE AA L+ F+ ++L+ Y RN+ +
Sbjct: 178 EQARDIVHGLPACGIRIAH----PPGEKAARRHLQK----FIDEKLEYYALLRND-VGRD 228
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCP------------------EAIDTFLEELI 309
S LSP+LH G IS+ R AL+ +A P + ++ LEE+I
Sbjct: 229 FQSDLSPWLHLGHISSLRVALQVIEAVGRPPLLLERAKLAEHSGQPSAYDGMNALLEEMI 288
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VR+EL+DNFC + P+Y SL+GA EW R++L+ H D RE Y+ +++E+A+T D WNA+
Sbjct: 289 VRKELSDNFCLHNPHYKSLQGAPEWGRQTLEAHREDPREFTYSLQEWEEARTHDRAWNAA 348
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q ++ GK+HG+MRMYWAKK+LEW+ PEEA+ + +YLNDKY +DG DPNGY G +WSI
Sbjct: 349 QTQLRRVGKIHGYMRMYWAKKMLEWSRSPEEAVEMCVYLNDKYSVDGGDPNGYAGILWSI 408
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
G+HD WKERPVFGKIRYM+ G +RK+D+D +Y KR +G
Sbjct: 409 GGLHDHPWKERPVFGKIRYMSAEGIRRKYDLD---SYCKRWLG 448
>gi|312143870|ref|YP_003995316.1| DNA photolyase FAD-binding protein [Halanaerobium hydrogeniformans]
gi|311904521|gb|ADQ14962.1| DNA photolyase FAD-binding protein [Halanaerobium hydrogeniformans]
Length = 458
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 272/468 (58%), Gaps = 25/468 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RI+ + + L+K VVYWM QR+ N AL +A ++ANK N P+ + F +
Sbjct: 3 LNESRIKKINEADLNKA-NYVVYWMQSAQRISYNHALSYAAERANKLNQPLFIFFLIDKD 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A+ FM GL+ L+ EE I FF+F E +D I + ASL V++ S
Sbjct: 62 FPEAEYGHYEFMFAGLKELKNRFEEK-DINFFIFNYE-DDAIFEQIA-AKASLFVSEKSY 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ +++ K K N + + + V+ + + PV SEK EY+A T+R KINK+ +YL D
Sbjct: 119 LKNLKKWKAKTANLIK--IPFYTVETNVICPVEEVSEKEEYAAYTIRKKINKIREQYLSD 176
Query: 191 YPMLEQPIEKWTGTRQSI------DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
Y ++ + + I D D +A + + ++ + + G AA + L
Sbjct: 177 YNEIQPENKTVLKLPEEINKYLIEDLDQYLAEMTFED-KISYKNFFKGGYQAAEQKL--- 232
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
+ FLT ++ +Y RN P S LSPYLHFGQISAQ AL A + K E F
Sbjct: 233 -NEFLTNKIADYGEKRNIPYFDYQ-SDLSPYLHFGQISAQEIALRALENSKEAEE----F 286
Query: 305 LEELIVRRELADNFCFYQPNYD-SLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTA 362
LEELIVRREL+ NF +Y NYD SLK +WA KSLK HA+DKR++ Y+ EQ + A+T
Sbjct: 287 LEELIVRRELSFNFVYYNQNYDGSLKDVLPDWAAKSLKKHAADKRDYNYSYEQLKNAETH 346
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
D WNA+Q EM GKMH +MRMYW KKILEW + PE+A A+ LN+KY +DGRDPN Y
Sbjct: 347 DQYWNAAQTEMKITGKMHNYMRMYWGKKILEWVSEPEKAYQYALKLNNKYSLDGRDPNSY 406
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
G W G HD+ WKER +FGKIRYMN +G +RKFD+ Y+A + ++
Sbjct: 407 AGVAWCF-GKHDRAWKERNIFGKIRYMNSNGLERKFDMQKYLAKINKL 453
>gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 453
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 191/462 (41%), Positives = 264/462 (57%), Gaps = 16/462 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+Q R+ +LK+G ++K V+YWM + QR R N AL +A+ +AN+ ++P+ V F +
Sbjct: 2 IQNERLFLLKKGECNEKGAYVLYWMQQSQRSRYNHALEYALGEANRRSLPLLVLFVVSRD 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+LGA R F+L G+ L+ ++ + I F L G+ + F + A+L+V D
Sbjct: 62 YLGAGRRHYRFLLEGIEQLEVDLADR-GIGFLLKIGDPPGIVAEFAAD--AALVVFDTGY 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
R ++R K S + EV++ VVPV AS K EYSA T+R KI LL ++
Sbjct: 119 TR-LQRSWRKAAAAGSFCAPVMEVESDLVVPVRTASGKEEYSAATIRRKITPLLFRFMQP 177
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA--EVPEIGWCESGEDAAMEVLKGSKDGF 248
I+ ++ DS A L + + EV + W G A L D F
Sbjct: 178 LKRQSAKIDSTALAGRADGLDSKAAEELLRFSQPEVEPVSWIHGGSVEAHRRL----DAF 233
Query: 249 LTK-RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
+T L+ + +RN+P K LS +SPYLH+GQISA AL +A + + FLEE
Sbjct: 234 ITSGTLERFHEERNDPSK-EGLSCMSPYLHYGQISALEIAL---RASEHPGPGCEAFLEE 289
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
LI+RRELA NF FY YDS + WAR+ L+ H DKRE +Y Q E+A+T DP WN
Sbjct: 290 LIIRRELAFNFVFYNRFYDSFEALPRWAREDLEAHEGDKREVLYDDAQLEEAKTHDPYWN 349
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A+Q E+ + GKMHG+MRMYW KKILEW+ P EA A+ LND+Y +DGRDPNGY G W
Sbjct: 350 AAQRELTHKGKMHGYMRMYWGKKILEWSASPREAFERALRLNDRYSLDGRDPNGYTGVAW 409
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
G HD+ W RPVFGKIRYMN G +RKFD+ Y+ V++
Sbjct: 410 CF-GKHDRPWASRPVFGKIRYMNDRGLERKFDIASYVKQVQK 450
>gi|310779936|ref|YP_003968268.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
DSM 2926]
gi|309749259|gb|ADO83920.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
DSM 2926]
Length = 459
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 187/472 (39%), Positives = 271/472 (57%), Gaps = 32/472 (6%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R +++ + ++K V+YWM QR R N L + V +AN+ P+ V FNL D + A
Sbjct: 4 RFKLINEKKIEKNGEYVLYWMQGSQRTRYNHCLEYGVLKANEMKKPLIVIFNLIDGYPDA 63
Query: 75 KARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129
R FML GL+ L R IE F++ G+ NI + AS+L+ D
Sbjct: 64 NERHYSFMLEGLKDVKKALFARKIE------FYISHGDMAKNIVKASEK--ASILICDKG 115
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
+ ++ + +I ++V E+D + VVPV AS+K EY+A+T+R KI + L E+L
Sbjct: 116 YMNIQKKWRAEISSKVKCQAV--EIDTNLVVPVEEASQKEEYAARTIREKIKRQLDEFLY 173
Query: 190 DYPMLEQPIEK-------WTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAMEV 240
D+ ++ + K + + D D++ + ++ V + + GE A +
Sbjct: 174 DFEKIKYSVNKSYNKKFCFYENNLNKDLDNVGKVLDNMKLNRSVSKSSFFYGGEIEAEKR 233
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR-KLCPE 299
L D F+ +L++Y ++P + +S LSPYLHFG IS ALE K + + E
Sbjct: 234 L----DEFIEIKLESYSYKNSDPGEDN-VSKLSPYLHFGNISPVEIALELLKMKNETNSE 288
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQFEK 358
+I+ FLEELI+RREL+ NF +Y YD G ++ WA ++L+ H SDKRE+IY+ E+ EK
Sbjct: 289 SIEAFLEELIIRRELSHNFIYYNERYDKWDGISYSWAYETLEKHRSDKRENIYSLEKLEK 348
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRD 418
+T D WNA+Q EMV G MHG+MRMYW KKILEW+ PEEA IYLN+KY +DGRD
Sbjct: 349 YKTHDIYWNAAQKEMVVTGFMHGYMRMYWCKKILEWSKTPEEAYERTIYLNNKYFLDGRD 408
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
PN Y G W G HD+ WKER +FGKIRYMN G KRKFD+D Y+ +++
Sbjct: 409 PNSYTGVAWCF-GKHDRAWKERSIFGKIRYMNSEGLKRKFDMDKYVKKTEKL 459
>gi|389843393|ref|YP_006345473.1| deoxyribodipyrimidine photolyase [Mesotoga prima MesG1.Ag.4.2]
gi|387858139|gb|AFK06230.1| deoxyribodipyrimidine photolyase [Mesotoga prima MesG1.Ag.4.2]
Length = 449
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 182/455 (40%), Positives = 257/455 (56%), Gaps = 32/455 (7%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM 82
S D++ V+YWM QR +N AL A +A + +VP+AV F L + R FM
Sbjct: 12 SNDRRGNFVLYWMQASQRTEENHALELAKQEAKELDVPLAVLFVLNANYPSGNLRSFSFM 71
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
GLR ++ +EE I F +F+G+ D +P + C +L+VTD LR + +I
Sbjct: 72 FDGLRDVKSELEEQ-GIRFVIFKGDPVDIVPKVSKRC--ALVVTDVGYLRHQIDWRKRIA 128
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE------- 195
++ V+++ VVPV AS K EYSA T R K+ K E++ D+ +E
Sbjct: 129 EKLE--CPFLSVESNVVVPVRTASCKEEYSAATFRKKVMKHFAEFVNDFEAVELRSRASL 186
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
E TG + +D + +V + V + + +EV FL+K L
Sbjct: 187 AEFEGATGI-EDVDLSDLDQSV----SVVSDFHGGQKEAKRRLEV-------FLSKNLDR 234
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELA 315
+ +RN+P LS +SP+LHFG IS A R+ C + + ++EEL+VRREL
Sbjct: 235 FEEERNDP-NSGCLSEMSPFLHFGHISPSYIA---RRVIDSCSKGKNAYIEELVVRRELG 290
Query: 316 DNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
NF FY YDS + +WA+K+L +H DKR ++ + E +T DP WNA+Q EM
Sbjct: 291 VNFVFYNSKYDSFEALPQWAQKTLNEHRKDKRVRSFSLSELESGKTDDPYWNAAQKEMSL 350
Query: 376 NGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
GKMHG+MRMYW KK+LEW++ PE A+ AIYLNDKYE+DGRDPNGY G +W G HD+
Sbjct: 351 TGKMHGYMRMYWGKKLLEWSSDPESAICSAIYLNDKYELDGRDPNGYAGILWCF-GKHDR 409
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
W ER ++GK+RYMN +G KRKFD+D +YVKRI
Sbjct: 410 AWSEREIYGKVRYMNSNGLKRKFDID---SYVKRI 441
>gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 455
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 187/466 (40%), Positives = 266/466 (57%), Gaps = 26/466 (5%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GR++ L ++ ++YWM R N L +A+ +N P+ V F + D++
Sbjct: 7 GRVKALNDRQFNQSGKYIIYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFLITDKYKY 66
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPL 131
+ AR FML G+ +++IEE I F + E D+I + E A L+TD + L
Sbjct: 67 SNARYYKFMLDGVLEAKKSIEER-GIKFII---EKSDDIKQRIIEISRSAVALITDKAYL 122
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
+ R+ I ++ + +EV++ +PV +AS+K E A LR KI LL YL+
Sbjct: 123 KYYRKLYSDIAKQLD--IPFYEVESDVCIPVEIASQKQEVYAFNLRKKIYALLDSYLLKL 180
Query: 192 PMLEQPIEKWT---GTRQ-SIDWDSIIAAVLRKGAEV---PEIGWCESGEDAAMEVLKGS 244
E I+ G ++ +++ I +L V P IG G + A LK
Sbjct: 181 APREPKIKSVNLDFGIKELTLNSSLEILDILNIDKSVSLSPFIG----GYNQAKRCLKE- 235
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F+ K+L Y R++P + S LSPYLHFGQIS LE K E +D+F
Sbjct: 236 ---FIEKKLHKYKEYRSHP-ELDYQSNLSPYLHFGQISPIEVVLEILSEYK-KDENVDSF 290
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
ELIV RELA NFC+Y PNY+ +G +WA+K+L+DH +DKR+++YT E+FE A+T D
Sbjct: 291 FNELIVWRELARNFCYYNPNYNHYEGIPDWAKKTLEDHKNDKRDYVYTLEEFENAKTHDE 350
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
WNA+Q+E++ +GKMH +MRMYW KKI+EWT P+ A IA YLNDKYE+DGRDPNGY G
Sbjct: 351 YWNAAQLELLKSGKMHNYMRMYWCKKIIEWTQDPKHAFDIACYLNDKYELDGRDPNGYAG 410
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
W G HD+ WKER +FGKIRYM+ SG + KFD+ Y+ VK +
Sbjct: 411 ISWCF-GTHDRPWKERKIFGKIRYMSASGLEAKFDIKKYVEKVKSL 455
>gi|395645794|ref|ZP_10433654.1| DNA photolyase FAD-binding [Methanofollis liminatans DSM 4140]
gi|395442534|gb|EJG07291.1| DNA photolyase FAD-binding [Methanofollis liminatans DSM 4140]
Length = 444
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 197/453 (43%), Positives = 251/453 (55%), Gaps = 18/453 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
VQP RI L G V+YWM QR +N AL ++V++AN N PV V F L
Sbjct: 2 VQPERISPL-NGREAVAGEYVLYWMQSSQRAGENPALEYSVERANSINKPVYVCFGLDVS 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A R FML GLR +++ I FF+ +G + F A L+VTD
Sbjct: 61 YPEANRRSFAFMLEGLRETGEDLK-VRGIPFFVREGPPYEVAAAFGE--AACLVVTDRGY 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + ++++ V V V++ VVPV VAS K E+SA T R KI + L YLI
Sbjct: 118 LRHLNAWRERVAAAVPCPVIT--VESGVVVPVEVASGKEEWSAATFRPKILRQLETYLI- 174
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P+ E+ + + D L VP G G A L F +
Sbjct: 175 -PVKERQVNVPLQPDEVADAGVPAVDRLLVDGSVP-AGMFAGGTAEARRHL----GIFCS 228
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+RL Y RN+P + LS LSPYLHFGQIS AL R A +LEE IV
Sbjct: 229 ERLSAYEDGRNDPNR-DVLSDLSPYLHFGQISPVEIALAVRATGM---PAARAYLEEAIV 284
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RRELA NF Y P YD+ G +WA+++L DHA D+RE+IYT + E+ +T D WNA+Q
Sbjct: 285 RRELAVNFVRYNPGYDAYDGLPQWAKQTLADHARDQREYIYTLRELEEGRTHDQYWNAAQ 344
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
+MV GKMHG+MRMYW KKILEW+ PE+A A+YLN++YEIDGR+PNGY G W
Sbjct: 345 RQMVVTGKMHGYMRMYWGKKILEWSETPEDAYRAALYLNNRYEIDGRNPNGYAGVAWCF- 403
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
G HD+ WKER +FGKIRYMN +G KRKFD D Y
Sbjct: 404 GKHDRPWKERAIFGKIRYMNANGLKRKFDADRY 436
>gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
Length = 460
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 258/454 (56%), Gaps = 13/454 (2%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+Q R++ L + L KK V+YWM QR N AL +A+ +AN PV V F + D
Sbjct: 2 IQKERVKSLNKAEL-KKGKYVLYWMQASQRETCNHALEYAIRKANALCQPVVVFFGIVDD 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A R FML GL +R +E+ I + E + R+ ASL+V D
Sbjct: 61 FPEANERHYFFMLEGLCDAKRTLEKR-GIQLVIQHCSPELGVVMMSRD--ASLVVVDRGY 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR I++ + D I +V++ VVP+ S K EYSA T+R KI++ L +YLI
Sbjct: 118 LR-IQKAWRNVAAASMDCPLI-QVESDVVVPIEETSSKEEYSAATIRKKIHQKLNQYLIS 175
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+ + + +S D + A+LR ++ C S E + D F+
Sbjct: 176 LEETKPMADSLSLDFESFPIDDVERAILR--LDIDRSVKCVSFFRGGFEEGRKHLDVFID 233
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
++L++Y RN+P LS +SPYLHFGQIS AL + + EA +LEELIV
Sbjct: 234 QKLEHYAEHRNDPTLD-CLSLMSPYLHFGQISPLYIALRILNSGRTSSEA---YLEELIV 289
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RREL NF FY +YD+ + WA+KSL+ H D+R + Y++++ E +T DP WNA+Q
Sbjct: 290 RRELGINFVFYNTHYDTFECLPGWAKKSLRTHEKDQRPYHYSRKELEDGKTHDPYWNAAQ 349
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
EMV GKMHG+MRMYW KKI+EW PEEA AIYLN+KYE+DGR+PNG++G W
Sbjct: 350 KEMVLKGKMHGYMRMYWGKKIIEWCETPEEAFHTAIYLNNKYELDGREPNGFMGVAWCF- 408
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
G HD+ W+ER +FG +RYMN G KRKFD DGY+
Sbjct: 409 GKHDRPWRERNIFGNVRYMNDRGLKRKFDADGYV 442
>gi|385799701|ref|YP_005836105.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
2228]
gi|309389065|gb|ADO76945.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
2228]
Length = 454
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 277/472 (58%), Gaps = 30/472 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V RI + + L KK V YWM R+ N AL +A+++AN+ N P+ + F + +
Sbjct: 3 VNKKRIEKINKSQL-KKGEFVAYWMQASPRLEYNQALGYAIEKANELNQPLLIFFLIDAK 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIE-ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129
F AK FML+GL+ L+ ++ E F F+L ++I ++ ASLL+++ +
Sbjct: 62 FPEAKTAHFKFMLQGLKELKTKLKNEDFN--FYLIDYNKLEDIKQITKK--ASLLISEKA 117
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
L+ +R+ K+++ +V + + V+++ + P+ S+K EY+A T+R KINK+ EYL
Sbjct: 118 YLKHLRKWKNQVAAKVK--IPFYLVESNLICPIEEVSDKEEYAAYTIRKKINKIKNEYLK 175
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK---- 245
+Y + + + I++++ ++ + E E +D + G K
Sbjct: 176 EYQL------QRLKNKNKIEFENKNLKFVKNLNQYLENKNFELQQDLSDHFRGGYKAAKL 229
Query: 246 --DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID- 302
+ FL +LK+Y RN P S LSPYLHFGQI+AQ AL A L E +
Sbjct: 230 KLNDFLKNKLKDYEEKRNIP-HLNFQSDLSPYLHFGQIAAQEIALAA-----LNSEYDEK 283
Query: 303 TFLEELIVRRELADNFCFYQPNYD-SLKGA-WEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+FLEELIVRRELA NF +Y NYD SLK ++WA +SL +H +D+RE++YT ++ E A+
Sbjct: 284 SFLEELIVRRELAFNFVYYNQNYDGSLKDILYDWAYQSLMEHQADEREYLYTYQELENAK 343
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
T D WNA+Q EM+ GKMH +MRMYW KKILEW + PEEA A+ LN+KY +DGRD N
Sbjct: 344 THDKYWNAAQKEMLLTGKMHNYMRMYWGKKILEWNSDPEEAYQWALKLNNKYSLDGRDAN 403
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
Y G W I HD+ WKER +FGK+RYMN +G +RKF+++ YIA + +
Sbjct: 404 SYAGVAW-IFSKHDRAWKERKIFGKVRYMNAAGLERKFEMEKYIAKINELTN 454
>gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 455
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 186/466 (39%), Positives = 263/466 (56%), Gaps = 26/466 (5%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GR++ L ++ +YWM R N L +A+ +N P+ V F + D++
Sbjct: 7 GRVKALNDRQFNQSGKYTIYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFPITDKYKY 66
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPL 131
+ AR FML G+ +++IEE I F + E D I V E A L+TD + L
Sbjct: 67 SNARYYKFMLDGVLEAKKSIEER-GIKFII---EKSDGIEQRVIEISKNAVALITDKAYL 122
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
+ R+ I ++ + +EV++ VPV +AS+K E A +R KI LL Y++
Sbjct: 123 KYYRKLYSDITKQLD--IPFYEVESDVCVPVEIASQKQEVYAFNIRKKIYDLLDSYILKL 180
Query: 192 PMLEQPIEKWT---GTRQ-SIDWDSIIAAVLRKGAEV---PEIGWCESGEDAAMEVLKGS 244
E I+ G ++ +++ I +L V P IG G A LK
Sbjct: 181 EPREPKIKSVNLDFGIKELTLNSSLEILDILNIDKSVSLSPFIG----GYSQAKRCLKE- 235
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F+ K+L Y R++P + S LSPYLHFGQIS ALE K E +D+F
Sbjct: 236 ---FIEKKLHKYKEYRSHP-ELDYQSNLSPYLHFGQISPIEVALEILSEYK-KDENVDSF 290
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
ELI RELA NFC+Y P+Y+ +G +WA+K+L+DH +DKR+++YT E+FE A+T D
Sbjct: 291 FNELIAWRELARNFCYYNPSYNHYEGIPDWAKKTLEDHKNDKRDYVYTLEEFENAKTHDE 350
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
WNA+Q+E++ +GKMH FMRMYW KKI+EWT P+ A IA YLNDKYE+DGRDPNGY G
Sbjct: 351 YWNAAQLELLKSGKMHNFMRMYWCKKIIEWTQDPKHAFDIACYLNDKYELDGRDPNGYAG 410
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
W G HD+ WKER +FGK+RYM+ SG + KFD+ Y+ VK +
Sbjct: 411 ISWCF-GTHDRPWKERKIFGKVRYMSASGLEAKFDIKKYVEKVKSL 455
>gi|260796887|ref|XP_002593436.1| hypothetical protein BRAFLDRAFT_206680 [Branchiostoma floridae]
gi|229278660|gb|EEN49447.1| hypothetical protein BRAFLDRAFT_206680 [Branchiostoma floridae]
Length = 316
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 212/314 (67%), Gaps = 9/314 (2%)
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
VDAHN+VP W S+K E+ A +RGKI LP YL ++P + + Q +DW S
Sbjct: 1 VDAHNIVPCWETSDKQEHRAYIIRGKIMDKLPTYLTEFPPVCKHPHPSPSKPQPVDWVST 60
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
A+ L VPE+ W G + L + F +RL+ Y DRN P +A S LS
Sbjct: 61 KAS-LEVDRTVPEVTWAMPGSVGGLRQL----ELFCKERLEVYSADRNKP-DHKAQSDLS 114
Query: 274 PYLHFGQ--ISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKG 330
P+ HFG+ +S QR L ++ + ++++ +++E ++ RE+A+N FY P+ YDSL G
Sbjct: 115 PWYHFGKCHVSVQRSILTVQQFQTEHSQSVEKYIDEAVIWREMAENSAFYNPDRYDSLLG 174
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390
A +WA+K+L+DHA DKR++IY++EQ E+A+T D LWNA+Q++MV GKMHGF+RMYWAK
Sbjct: 175 APDWAQKTLRDHAGDKRQYIYSREQLEQARTHDDLWNAAQIQMVREGKMHGFLRMYWAKM 234
Query: 391 ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMN 450
ILEWT PE AL AIYLNDKY +DGRDPNGY GC+W+I G+HD+ ++ERP++GKIR+M
Sbjct: 235 ILEWTPSPEVALKEAIYLNDKYNLDGRDPNGYAGCLWAIGGLHDRDFQERPIYGKIRFMT 294
Query: 451 YSGCKRKFDVDGYI 464
Y KRKFDV G++
Sbjct: 295 YYASKRKFDVPGFV 308
>gi|452944037|ref|YP_007500202.1| DNA photolyase FAD-binding protein [Hydrogenobaculum sp. HO]
gi|452882455|gb|AGG15159.1| DNA photolyase FAD-binding protein [Hydrogenobaculum sp. HO]
Length = 455
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 181/466 (38%), Positives = 264/466 (56%), Gaps = 26/466 (5%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GR++ L ++ ++YWM R N +L +A++ +N P+ V F + D+
Sbjct: 7 GRVKALNDRQFNQSGKYIIYWMSHSHRANFNHSLEYAINLSNDYKKPLLVYFPITDKCRY 66
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPL 131
+ AR FML G+ +++IEE I F + E D+I V E A+ L+TD + L
Sbjct: 67 SNARYYKFMLDGVLEAKKSIEER-GIRFII---EKSDDIKRRVIEISKNANALITDKAYL 122
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
+ R+ I ++ + +EV++ VPV + S+K E A +R KI +L YL+
Sbjct: 123 KYYRKLNSDIAKKLD--IPFYEVESDVCVPVEIVSQKQEVYAFNIRKKIYDVLGSYLLKL 180
Query: 192 PMLEQPIEKWT---GTRQSIDWDSI----IAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
E I+ G + +S+ I + + + P IG G A L
Sbjct: 181 KPREPKIKSINLDFGMEEITLNNSLKILDILNIDKSISLSPFIG----GYSQAKRYL--- 233
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
+ F+ K+L Y R++P + S LSPYLHFGQIS E K E +D+F
Sbjct: 234 -EEFIEKKLHKYKDYRSHP-ELDYQSNLSPYLHFGQISPLEVVFETLSKYKR-DENVDSF 290
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
ELIV RELA NFC+Y PNY+ +G +WA+K+L++H +DKR+++YT E+FE A+T D
Sbjct: 291 FNELIVWRELARNFCYYNPNYNHYEGIPDWAKKTLEEHKNDKRDYVYTLEEFENAKTHDE 350
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
WNA+Q+E++ GKMH +MRMYW KKI+EWT GP+ A IA YLNDKYE+DGRDPNGY G
Sbjct: 351 YWNAAQLELLKTGKMHNYMRMYWCKKIIEWTQGPKHAFDIACYLNDKYELDGRDPNGYAG 410
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
W G HD+ WKER ++GKIRYM+ SG + KFD+ Y+ +K +
Sbjct: 411 ISWCF-GTHDRPWKERKIYGKIRYMSVSGLESKFDIKKYVEKIKSL 455
>gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
str. Marburg]
gi|313104153|sp|P58818.2|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
str. Marburg]
Length = 444
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 187/483 (38%), Positives = 259/483 (53%), Gaps = 65/483 (13%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RIR L + V+YWM R N AL +A++ AN + P+ V F L D+
Sbjct: 2 IHDERIRSLNTEKPARDGKYVIYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDE 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A +R F++ GLR ++ + + + GA L+V + P
Sbjct: 62 FPNANSRHYRFLIEGLR-----------------------DVGDALMKRGARLVVENERP 98
Query: 131 LREIRRCKDKICNRVSD------------------SVTIHEVDAHNVVPVWVASEKLEYS 172
+ R D+ V D V + +V+++ +VPV AS K EYS
Sbjct: 99 PSAVMRYSDEASAVVVDRGYLDIQKEWVDELAESLHVPLMQVESNVIVPVETASPKEEYS 158
Query: 173 AKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD-----SIIAAVLRKGAEVPEI 227
A T R KI + L +++ P+++ S+D D + + R E+ E
Sbjct: 159 AGTFRPKITRELERFMV-------PLKERRLAVDSLDLDPGPDLNDVTGKFRASEEL-EP 210
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G A+ + D FL+++L + RN+P+K LS +SPYLHFG IS A
Sbjct: 211 SIFSGGASEAIRLF----DEFLSEKLACFEKYRNDPVK-NCLSNMSPYLHFGHISPLYLA 265
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
++A K + CPE FLEELIVRREL+ NF Y NY S++ EWA+K+L +HA D +
Sbjct: 266 MKASKTGE-CPE----FLEELIVRRELSMNFVHYSDNYSSIRCLPEWAQKTLMEHARDPK 320
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIY 407
E+ YT +FE+A+T DP WNA+Q EMV GKMHG+MRMYW KKILEWT PE A IAIY
Sbjct: 321 EYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRMYWGKKILEWTDHPERAYDIAIY 380
Query: 408 LNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
LNDKYEIDGRDPNG+ G W G HD+ W ER +FGK+RYMN G +RKF + Y+ V
Sbjct: 381 LNDKYEIDGRDPNGFTGVAWCF-GKHDRAWAEREIFGKVRYMNDRGLERKFRIGEYVRRV 439
Query: 468 KRI 470
+ +
Sbjct: 440 QEL 442
>gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Sphaerochaeta globus str.
Buddy]
gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Sphaerochaeta globus str.
Buddy]
Length = 459
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 184/468 (39%), Positives = 261/468 (55%), Gaps = 22/468 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
++ RI +L ++K VVYWM QRVR N AL A++QAN P+ V F L
Sbjct: 2 IESQRITLLSSMPVNKAGSFVVYWMQAAQRVRQNEALAFAIEQANALGKPLVVFFGLERS 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG-ASLLVTDFS 129
F GA+ R FML GL +++ ++L + IP + S+LVTD +
Sbjct: 62 FAGAQERHYRFMLEGLA----EVQQQLRLLGIPLWVHGDGIIPGLAKLVPFISVLVTDRA 117
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
R R+ + ++ + VS +EV+ + +VP+ S+K EYSA TLR KI ++ Y
Sbjct: 118 YTRVERQWRKQVASFVS--CPFYEVETNVIVPLEAVSDKEEYSAATLRRKIESMIA-YFA 174
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCE---SGEDAAMEVLKGS 244
+++P+ ++ A VL+ A G C GE A + L
Sbjct: 175 QIVAIQKPLVDGLSEEPLFACVNLGDTAMVLKALALGKMGGVCPHLVGGEIQAHQKL--- 231
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F+ +L Y RN+P + + SGLSPYLHFGQISA R++ E + F
Sbjct: 232 -SQFIESKLSGYAIHRNDPSQQFS-SGLSPYLHFGQISAIDIY---HAVREIEVEDVPVF 286
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LEELIVRRELA NF ++ P YD+ +G WA+KSL H D+R +Y+ + E+AQT DP
Sbjct: 287 LEELIVRRELAYNFVWFNPLYDAYEGLPSWAQKSLAFHEQDRRPILYSFAELEQAQTHDP 346
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
WNA+Q E+ G MH ++RMYW KKILEW+ P+EA A+ LN+ Y++DGRDPNGY G
Sbjct: 347 YWNAAQKELTELGTMHNYLRMYWGKKILEWSPSPKEAFMRALALNNTYQMDGRDPNGYAG 406
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
W G HD+ W ERP+FG IRYMN G +RKF++ GY+A +++ +G
Sbjct: 407 VAWCF-GKHDRPWAERPIFGNIRYMNDKGLERKFNMSGYLARIEKEIG 453
>gi|355570882|ref|ZP_09042152.1| DNA photolyase FAD-binding [Methanolinea tarda NOBI-1]
gi|354826164|gb|EHF10380.1| DNA photolyase FAD-binding [Methanolinea tarda NOBI-1]
Length = 455
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 178/447 (39%), Positives = 245/447 (54%), Gaps = 27/447 (6%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R N AL +A+ A ++PV F + + A R F+ G+
Sbjct: 21 VLYWMQSSVRSGGNMALAYALAIARTRDLPVVTCFCIDPSYPEANLRHFTFLAEGILSAG 80
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ + +I L +G+ I + R+ A+L+VTD L RRC++ + T
Sbjct: 81 KRLSRR-KIPLVLRRGDPVKEISDLARD--AALVVTDRGYLSYHRRCREALARETGSPFT 137
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+ E +A +VPV AS+K E+SA T R KI +P + D P R+ D
Sbjct: 138 VVEDNA--IVPVESASQKEEWSAGTFRRKIGGHVP-FFFDLPA------DAVSVRKPPDI 188
Query: 211 DSI----IAAVLRKG--AEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
D I + ++ G + V GED A L + F+ +L YP+ RN+P
Sbjct: 189 DGIPYRDVKTLIHSGIDSTVGPSPLFRGGEDEARRRL----EIFIKDKLPIYPSRRNDPS 244
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
+ LS LSPYLHFG IS CA + + + FL++LIVRRELA NF Y P
Sbjct: 245 R-DVLSHLSPYLHFGNISPLECASRVLETQG---QGTGEFLDQLIVRRELAINFVHYNPR 300
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
YDS +G W ++L HA D RE+ YT + E+A T DP WNA Q E+V GKMHG+MR
Sbjct: 301 YDSFQGLPSWVLETLAHHARDLREYTYTARELERAATHDPYWNACQNELVITGKMHGYMR 360
Query: 385 MYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
MYWAKKILEWT PEEA ++A+ LN++YE+DGRDP+ Y G W G HD+ W ERPVFG
Sbjct: 361 MYWAKKILEWTRSPEEAFSLALVLNNRYELDGRDPSSYAGIAWCF-GKHDRPWPERPVFG 419
Query: 445 KIRYMNYSGCKRKFDVDGYIAYVKRIV 471
K+RYMN +G RKF +DGY+ V+ ++
Sbjct: 420 KVRYMNAAGLARKFRIDGYVQRVEALI 446
>gi|359457902|ref|ZP_09246465.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 470
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 267/476 (56%), Gaps = 33/476 (6%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ ++ RI++L + ++ + G V+YWM + QR N AL +A+ +AN PV V F L
Sbjct: 3 NSLIEDERIQILNKQNV-QPGGYVLYWMQQSQRAEYNHALEYAIQRANDLQQPVVVCFGL 61
Query: 68 FDQFLGAKARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECG-- 120
+ G+ R FML GL+ L+QR I+ F + G N E G
Sbjct: 62 MADYPGSNLRHYTFMLEGLQDTEQALIQRGIK------FVMRYG----NPDQIALELGKD 111
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
ASL+V D LR R+ +D + V +V++ VVP+ S K +Y+A+T+R +I
Sbjct: 112 ASLVVCDRGYLRFQRQWRDNVAQNALCQVA--QVESEVVVPIETTSVKADYAARTIRPRI 169
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD-SIIAAVLRK---GAEVPEIG-WCESGED 235
++ L +L+ P P+++ + D S I AVL K VP + + G
Sbjct: 170 HRHLDRFLV--PFASTPVQQSSLHLDLKTLDLSNIEAVLAKLPLDCSVPPVSSLFQGGTT 227
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
A E+L + FL K Y RN P + +S +S YLHFGQIS AL+ +
Sbjct: 228 RAKEIL----EQFLQKSFAIYADHRNQP-QTDDVSYMSQYLHFGQISPLYLALQIQSMGN 282
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+ + +DT++EELIVRRELA NF +Y P+YD+ WA+ +L +H D R Y+ EQ
Sbjct: 283 VPRDNVDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNWAKTTLDNHRHDPRIPCYSLEQ 342
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEID 415
++++T DP WNA+ EM + G MH +MRMYW KKI+EWT+ PE A A+ LN+KY ID
Sbjct: 343 LDESRTEDPYWNAAMREMKHTGYMHNYMRMYWGKKIIEWTSTPELAFQTALDLNNKYFID 402
Query: 416 GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
GRD N Y G W + GVHD+GW+ERP+FG +RYM SG KRK D+DGYI V + V
Sbjct: 403 GRDANSYTGVAW-VFGVHDRGWRERPIFGTVRYMAASGLKRKCDIDGYIKKVNQRV 457
>gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
AK-01]
gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
AK-01]
Length = 456
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 184/467 (39%), Positives = 258/467 (55%), Gaps = 27/467 (5%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RIR L + +K V+YWM + QR + N AL A+ +AN +VPV V F L +
Sbjct: 7 ARIRRLNERP-GQKGAYVLYWMQQSQRAKHNLALEFAISRANDLDVPVVVVFGLTVNYPE 65
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPL 131
A R FML GL QR + E L L E++ P + G A+L+VTD +
Sbjct: 66 ANYRHYLFMLEGLAETQRQLRERGIPLVVL-----ENSPPLAALDLGKKAALIVTDKGYM 120
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI-- 189
R R + ++ + S V E D +VPV +AS+K E++A+T+R KIN+ L +L+
Sbjct: 121 RHQREWRAQVAEQASCQVVQVETDV--IVPVNIASQKAEWAARTIRPKINRELDNFLLLP 178
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEI-----GWCESGEDAAMEVLKGS 244
+ L+ + + Q +D A L K +PE + + G AA + +
Sbjct: 179 EKCALKNKVRDFD--IQGLDLSD--PASLLKNLGMPETPPGVSAFFKGGASAAQKRM--- 231
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
D F+ K L NY N P +SG+ PYLHFGQ+SA AL + + PEA +
Sbjct: 232 -DKFIQKSLDNYSRHHNRP-DLADVSGMGPYLHFGQVSAAALALRVKNLKDADPEAQAAY 289
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LE++IVRRELA NF + PNYD WA+K+LK+ A D R+ +YT +Q E T DP
Sbjct: 290 LEQIIVRRELAMNFVHFTPNYDQYACLPTWAQKTLKERAQDPRDPLYTPDQLEACDTHDP 349
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
WNA+ EMV G MH MRMYW KKILEW+ P++A + +YLN+KY +DGRDPN Y G
Sbjct: 350 YWNAAMREMVVTGYMHNHMRMYWGKKILEWSPSPQKAWDVLLYLNNKYFLDGRDPNSYAG 409
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W I G+HD+GW RP+FG +RYM SG +RK + Y+A ++ +
Sbjct: 410 VGW-IFGLHDRGWNRRPIFGTVRYMAASGLERKCKIKDYVARIESLT 455
>gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
Ice1]
gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
Ice1]
Length = 498
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 197/511 (38%), Positives = 262/511 (51%), Gaps = 65/511 (12%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+Q RI+VL GS R V+YWM QR N AL +A+ +ANK +PV V F L
Sbjct: 2 IQRERIQVLNAGSAQAGRY-VLYWMQASQRAEYNHALEYAIGEANKLGLPVLVFFGLTGG 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQ---ILFFLFQGEAEDNIPNFVRECGASLLVTD 127
GA AR F+L GL ++ E Q I + + + + R A+L+VTD
Sbjct: 61 VPGANARHYRFLLEGLC----DVREALQRRGIAMIIRRIPPVEGVVALARR--AALVVTD 114
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
LR R+ ++ R+ +V++ +VPV AS K EY A T R KI +LL +
Sbjct: 115 RGYLRYQRQWREAAAARID--CPFIQVESDVIVPVETASPKEEYGAATFRPKIKRLLDTF 172
Query: 188 LI------------------DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
L+ D + +P+ + T S SI+ A+ + P GW
Sbjct: 173 LVPLEERDTDCPAPDVEALLDEALPGEPVFADSATPLS----SIVTALSVDASISPARGW 228
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
++A + D FL K+L Y D+ +P LS LSP+LHFGQIS AL+
Sbjct: 229 RGGSKEAHRRL-----DDFLGKKLFRYHEDKKDP-SLDGLSELSPFLHFGQISPLEVALK 282
Query: 290 ARKARK---------------------LCPE---AIDTFLEELIVRRELADNFCFYQPNY 325
AR+A + P + FLEELIVRRELA NF +Y P Y
Sbjct: 283 ARQAVATDLSLDGTGLSLDGTGPSPVGVGPSPNPGLAAFLEELIVRRELAMNFAYYNPAY 342
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D WA+ +L H D RE YTK + E A T D WNA+Q E+V GKMHG+MRM
Sbjct: 343 DQFAALPAWAQATLHSHRLDSREFNYTKAELENACTHDRYWNAAQTELVLRGKMHGYMRM 402
Query: 386 YWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGK 445
YW KKILEWT PE A IA+ LND Y +DGRDPNGY G W G HD+ W ER +FGK
Sbjct: 403 YWGKKILEWTADPERAYRIAVELNDTYALDGRDPNGYTGIAWCF-GKHDRPWGERAIFGK 461
Query: 446 IRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
+RYMN +G +RKFD++ Y+ V+ +V +K
Sbjct: 462 VRYMNAAGLRRKFDIEAYVRKVENLVEENEK 492
>gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
Length = 486
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 179/472 (37%), Positives = 261/472 (55%), Gaps = 18/472 (3%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R+L QG+ V+YWM R QR + N AL A+ N +PV F L + A
Sbjct: 13 RVRLLVQGAPVADGSCVLYWMQRAQRAKANPALNLAIALGNSLKLPVWAVFGLTPSYPEA 72
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
+ R F++ GL Q + + + + G+ + V E +++V D +P+R I
Sbjct: 73 QRRHYRFLIEGLVDTQADAAQ-LGVPLVVRLGDPPAVVLKAVEESRPAVVVGDENPVR-I 130
Query: 135 RRC-KDKICNRVSDSVTIHEVDAHNVVPVWVAS--EKLEYSAKTLRGKINKLLPEYLIDY 191
+C + K+ +S + V +S K EY+A+T+R KI+++L E+L
Sbjct: 131 GQCWRAKVAESLSQRARPIPFPVVDADVVVPSSLFPKEEYAARTIRPKIHRMLHEWLKPL 190
Query: 192 PMLEQ----PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
P+++ P ++ +G + I L V +G + E + +
Sbjct: 191 PVIKAKTPWPTDE-SGQGGPPQGEPITVEHLMGQIRVGGVGEVPNYPGGTREAERRLQR- 248
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL------CPEAI 301
F+ +RL Y DRN P+ P S LS +LHFG IS AL +K + ++
Sbjct: 249 FVAQRLARYGKDRNEPI-PYMTSELSAHLHFGHISPLTIALAVQKEAEEAGVAAETKASV 307
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+++LEE+IVRRELA NF P YDSL G +WAR +L HA+D R +YT Q E+A+T
Sbjct: 308 ESYLEEMIVRRELAINFVARNPKYDSLAGCPDWARATLAKHANDPRPKLYTATQLERAET 367
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
DPLWNA+Q EM G+MH ++RMYWAKKILEW+ PE A A+A+ LND+YE+DGRDPNG
Sbjct: 368 HDPLWNAAQKEMTLTGRMHNYLRMYWAKKILEWSPDPETAFAVALDLNDRYEMDGRDPNG 427
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGG 473
Y G W+I G HD+ W ERP+FG +RYM+Y +RKFD + YIAYV+ + G
Sbjct: 428 YTGVAWAIGGKHDRPWGERPIFGTVRYMSYDSTRRKFDSERYIAYVRGLERG 479
>gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
51196]
gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
51196]
Length = 470
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/470 (37%), Positives = 261/470 (55%), Gaps = 17/470 (3%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+ V + G+ + VVYWM R QR DN AL A+ N+ +PV F+ F
Sbjct: 10 QDARVTVRRNGAPLPQGKCVVYWMQRAQRALDNPALDMAIRIGNELGLPVVAYFSAISNF 69
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
A R F+ +GL ++ ++ E + + F+ + +++ + E A++L+ D +P
Sbjct: 70 PHANLRHYVFLNQGLADIEEDMAE--RNVTFIVRRPPGNSLEQLLEEVQAAMLIGDENPC 127
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
RE R + I R++ + +DA VVP + K +Y R + LLP+YL+
Sbjct: 128 REPERWRQVIAKRLN--MPYWTIDADVVVPSNLFP-KHQYMVHIFRKRFEPLLPQYLVPQ 184
Query: 192 PMLEQPIEKWTGTRQSIDWD---SIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
P++ Q + W + +D + + V + G A +LK F
Sbjct: 185 PVI-QAEKSWPHPKGFEAFDVRHDVTEGWSKFDRSVKPVDSFHGGTHEAQRLLKD----F 239
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL---EARKARKLCPEAIDTFL 305
+T +L NYP +RN+P + S LSPYLHFG IS AL +A K + EA D++L
Sbjct: 240 VTNKLANYPKERNHP-ELDGTSRLSPYLHFGHISPLTIALAVEDAHKNKHASREACDSYL 298
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
ELI R++A NF + P YDS + A EWA+K+L++HA D R+ IYT E+ E+A+T D L
Sbjct: 299 NELIAWRDMAVNFVKFVPGYDSFEAAPEWAQKTLREHARDTRDPIYTLEELERAETCDEL 358
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
WNA+Q +M++ G MH +MRMYWAKKILEW+ P +A +YLND+Y +DGRDPNGY G
Sbjct: 359 WNAAQRQMLHAGWMHNYMRMYWAKKILEWSPSPVQAWETCVYLNDRYFLDGRDPNGYAGI 418
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
W+I GVHD+ W ER +FG IRYM+ + +KFD YI ++ + +
Sbjct: 419 AWAIGGVHDRPWFERDIFGTIRYMSGNAAAKKFDATRYIRQMEELAESAQ 468
>gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
17093]
gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
17093]
Length = 489
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 183/468 (39%), Positives = 258/468 (55%), Gaps = 16/468 (3%)
Query: 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
T VQ R++ L L R V+YWM + QR R N AL HA AN N P+ VAF L
Sbjct: 36 TGVQDARVKALNDHDLADGRY-VLYWMQQSQRARFNHALEHAAMWANDLNKPLLVAFGLM 94
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
D + A AR F+L GL+ + + E +I F + +G ++ ++ A+LLV D
Sbjct: 95 DDYPEANARHYAFLLEGLQDVAEALAER-RIAFVVQRGRPDEVALRLAQD--AALLVCDR 151
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
LR R ++++ + +V++ VVPV VAS+K E++A+TLR K+ + L YL
Sbjct: 152 GYLRHQRLWRERVAREAR--CRVVQVESDVVVPVEVASDKKEHAARTLRPKLTRHLETYL 209
Query: 189 IDYP--MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
D L P + + + A L+ V + G VL+
Sbjct: 210 RDVEEVALRAPSRELGVEGLDLTDPGALLASLKLDTSVAPVRRFRGGTREGERVLRA--- 266
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
FL +R +Y RN P + +S +S YLHFGQIS ALE ++A + + +LE
Sbjct: 267 -FLRERFGDYAATRNQP-QTNNVSHMSKYLHFGQISPVFVALEVQRAG--AGKNAEVYLE 322
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
ELIVRREL NF FY+P+YD WARK+L +H D REH+YT+EQ E A+T DP W
Sbjct: 323 ELIVRRELPMNFVFYEPHYDRYDALPAWARKTLDEHRGDAREHLYTREQLEAAETHDPYW 382
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
NA+ EM++ G MH +MRMYW KKILEW+ PEEA A++LN++Y +DGRD N Y
Sbjct: 383 NAAMKEMLHTGYMHNYMRMYWGKKILEWSPSPEEAFETALHLNNRYFLDGRDANSYANVA 442
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGT 474
W + G HD+ W ER V GK+RY++ G +RK D Y+ V+ ++G
Sbjct: 443 W-VFGQHDRPWAERAVCGKVRYLSAGGLERKADPKAYVRKVEELIGAA 489
>gi|220931344|ref|YP_002508252.1| deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
gi|219992654|gb|ACL69257.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
Length = 466
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 173/471 (36%), Positives = 271/471 (57%), Gaps = 27/471 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RI+ L + +++ + ++YWM QR N AL +A+ +ANK+N P+ V F +
Sbjct: 2 IHNSRIKPLNKKNINPRGEYILYWMQASQRTEYNHALEYAIIEANKSNKPLLVYFGIDTS 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A R FML GL+ +++++ I + + +I F ASLLV D
Sbjct: 62 FPEANRRHYQFMLEGLQEVKKSLYNR-GIKMIIESVPPDKDILKFAEY--ASLLVVDRGY 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ R ++ + ++ + +V+++ +VPV VAS K EY+A T+R K+ + LPE+L
Sbjct: 119 LKIERTWRNNVSQQID--CPLIQVESNVIVPVEVASSKEEYAAYTIRKKLYRKLPEFL-- 174
Query: 191 YPMLEQPIEKWTG-------TRQSIDWDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVL 241
+P+ + I + + I D++ + L+ VPE+ G A+ +
Sbjct: 175 HPLHTRTIRVSSLDLKLSFINYKDIPLDNVTLCLDRLKVDNTVPEVNLYRGGTTRALALY 234
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPE 299
+ FL ++K+Y RN+P+K +S +SPYLHFGQ+S ++ + +
Sbjct: 235 ----NDFLHNKIKDYHEYRNDPVK-NWISNMSPYLHFGQVSPLHLIIKGNNYCKKHEIDK 289
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
F EEL++RREL+ NF +Y P+YDS+K +WA+K+LK+H +D RE Y+ ++ E A
Sbjct: 290 GFKEFFEELVIRRELSFNFVYYNPDYDSIKSLPDWAKKTLKEHENDTREFSYSLQELEDA 349
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
+T DP WNA+Q E++ GK+HG+MRMYW KKILEWT+ P+ A A+YLN+KY +DGRDP
Sbjct: 350 KTHDPYWNAAQKELLLTGKIHGYMRMYWGKKILEWTSSPDLAYKYALYLNNKYALDGRDP 409
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
NG+ G W G HD+ W +FGK+RYM+ G KRKF +D Y+KRI
Sbjct: 410 NGFAGVAWCF-GKHDRPWPGCNIFGKVRYMSSGGLKRKFKID---LYLKRI 456
>gi|15678924|ref|NP_276041.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2507184|sp|P12769.2|PHR_METTH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|639674|dbj|BAA06411.1| photolyase [Methanothermobacter thermautotrophicus]
gi|2622000|gb|AAB85402.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 445
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 187/472 (39%), Positives = 261/472 (55%), Gaps = 41/472 (8%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RIR L D + VVYWM R N AL +A++ AN P+ V F L D
Sbjct: 2 IHAERIRNLNGEEPDLRGSYVVYWMQASVRSHWNHALEYAIETANSLKKPLIVVFGLTDD 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEET-FQILFFLFQGEAEDNIPNFVRE--CGASLLVTD 127
F A +R F++ GLR ++ N+ E Q++ D+ P+ + + A+ VTD
Sbjct: 62 FPNANSRHYRFLIEGLRDVRSNLRERGIQLVV------ERDSPPSVLLKYADDAAAAVTD 115
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
L + D+ + + + +V+++ +VPV AS+K EYSA T + KI + L +
Sbjct: 116 RGYLDIQKEWVDEAAGALH--IPLTQVESNVIVPVETASDKEEYSAGTFKPKIKRHLKRF 173
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE-IGWCESGEDAAMEVLKGSKD 246
++ P+ T S+D L G E + + + ED V +G
Sbjct: 174 MV-------PLRMRTLKMDSLD--------LEPGPEFEDAVRDFRAPEDLEPSVFRGGTS 218
Query: 247 G-------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
FL ++L+ + RN+P+K LS +SPYLHFGQIS AL A +A + CPE
Sbjct: 219 TALSIFSEFLREKLECFERYRNDPVK-NCLSNMSPYLHFGQISPLYLALRASEAGE-CPE 276
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
FLEELIVRREL+ NF Y +Y S+ EWA+++L DH +D RE+ Y+ + E A
Sbjct: 277 ----FLEELIVRRELSMNFVHYSDSYSSISCLPEWAQRTLMDHVADPREYEYSLRELESA 332
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
T DP WNA+Q EMV GKMHG+MRMYW KKILEWT P A IA+YLND+YEIDGRDP
Sbjct: 333 STHDPYWNAAQQEMVITGKMHGYMRMYWGKKILEWTDHPARAYDIALYLNDRYEIDGRDP 392
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
NG+ G W G HD+ W ER +FGK+RYMN G KRKF +D Y+ ++ ++
Sbjct: 393 NGFAGVAWCF-GKHDRAWAEREIFGKVRYMNDRGLKRKFRIDEYVDRIRGLM 443
>gi|452819843|gb|EME26894.1| deoxyribodipyrimidine photo-lyase isoform 1 [Galdieria sulphuraria]
Length = 487
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 172/470 (36%), Positives = 258/470 (54%), Gaps = 36/470 (7%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R+RVL + + R V+YWM R+ N+AL +AV AN+ P+ + F L +
Sbjct: 5 VSNQRVRVLNNKPVQESREFVLYWMQAAVRLTYNYALQYAVFSANQLGKPLLICFGLTES 64
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A AR F+L GL+ +QR + E ++ +F E E + + A +V D +
Sbjct: 65 FPEANARHYAFLLEGLQDVQRQLAER-KLSMVVFHSEPEQMVEKLFHK--AVQVVVDMNY 121
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI----NKLLPE 186
LR + + ++ + + S +V+ VVPV + ++K EY+A+T+R K+ NK L
Sbjct: 122 LRVTKNWRQRVASNIDCSFI--QVETECVVPVELVTDKEEYAARTIRPKLWKHANKFLIP 179
Query: 187 Y---------LIDYPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
+ L+D P +++ + G + + L VP + GE
Sbjct: 180 WADTIHVENQLVDIPQIDELTVLDLQGEAKEL------VERLNVDKTVPPVSHFVGGETE 233
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR--CALEARKAR 294
A L F +L++Y RN+P +S +SPYLHFG IS C ++ +A
Sbjct: 234 AKRRLAE----FCRSKLRDYEKKRNDP-SLNCVSHMSPYLHFGHISPVEIVCQVQQAQAS 288
Query: 295 KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
K C D F+EE+ +RREL+ NFC+Y YD+ WA++++ +H+ D R+ YT E
Sbjct: 289 KTCK---DAFIEEVFIRRELSFNFCYYCDKYDAFDCLPTWAKQTMSEHSKDPRQFSYTLE 345
Query: 355 QFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEI 414
Q E A T DP WNA+Q+EMV GKMH +MRMYW KK++EWTT PEEA I +YLN+KYE+
Sbjct: 346 QLETAVTHDPYWNAAQLEMVQTGKMHNYMRMYWGKKVIEWTTNPEEAFRILLYLNNKYEL 405
Query: 415 DGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
DGRDPN + G W G HD+ ERP+ GK+RYM+ G +RKF+++ Y+
Sbjct: 406 DGRDPNSFTGVAWCF-GKHDRAHMERPITGKLRYMSAEGLRRKFNIESYV 454
>gi|374316669|ref|YP_005063097.1| deoxyribodipyrimidine photolyase [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352313|gb|AEV30087.1| deoxyribodipyrimidine photolyase [Sphaerochaeta pleomorpha str.
Grapes]
Length = 509
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 178/459 (38%), Positives = 251/459 (54%), Gaps = 18/459 (3%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+++L + + VVYWM QR N AL +A+ AN + P+ V F + F A
Sbjct: 50 RLKILNDKAPNTNGDYVVYWMQASQRTIQNDALSYAIQTANAMHKPLLVYFGITANFPQA 109
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R FML G+ +++++E L G E P + + LV D R
Sbjct: 110 NRRHYRFMLEGMEETEKDLKELGIPLLVHPYGIIEGLKPLYSH---MAYLVVDRGYTRHE 166
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
R + ++ ++ + V+++ +VPV AS K EYSA TLR KI ++ E + + P+L
Sbjct: 167 RAWRAQVAQETPCAMIM--VESNVIVPVECASTKEEYSAATLRRKITPMIGECIQELPVL 224
Query: 195 --EQPIEKWTGTRQSIDWDSIIAAVLRKG--AEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P S D I A + G E + W G+ A +LK F+
Sbjct: 225 ALSVPSLNLDTPYASADLSQIPALMEHLGIAEEASQCPWMHGGQANASAILKT----FIQ 280
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+ L+ Y + N+P P +S LSPYLHFG IS E K P+ + FLEEL++
Sbjct: 281 ENLEGYGSKSNDPAIPH-VSHLSPYLHFGMISPVTIYQEVMKTG--LPD-VAPFLEELVI 336
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RRELA NF +Y P YD+ +G WAR S++ H +DKR IYTKEQ E+A+T D WN +Q
Sbjct: 337 RRELAMNFVYYNPLYDAYEGLPAWARASMQKHQADKRTSIYTKEQLERAETHDRYWNTAQ 396
Query: 371 MEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
E+V G MHG+MRMYW KKILEW+ P+EA A A+YLN+KY++DGRDPNG+ G W
Sbjct: 397 RELVGLGTMHGYMRMYWGKKILEWSETPQEAFATALYLNNKYQMDGRDPNGFAGIAWCF- 455
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
G HD+ W ER +FG +RYMN G +RKF + YI +++
Sbjct: 456 GKHDRPWAERAIFGNVRYMNDKGLERKFTMQDYIERIEK 494
>gi|124506191|ref|XP_001351693.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium falciparum 3D7]
gi|23504621|emb|CAD51500.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium falciparum 3D7]
Length = 1113
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 172/464 (37%), Positives = 257/464 (55%), Gaps = 54/464 (11%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD-QFLGAK----ARQLGFM 82
+ V+ + RD R+ DNW+LI+A ++A +LF +L K R +
Sbjct: 629 KNNVLLLLTRDFRINDNWSLIYAYEKA------KKKKAHLFACTYLNRKEPFPKRHIDIK 682
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
L+ L+ L+ N+++ I F+L D F+R ++ DF+PL E R I
Sbjct: 683 LKVLKNLEENMKKILNIPFYLLTIYMIDEFMEFLRIYDIKTIICDFNPLNETRIF---IQ 739
Query: 143 NRVSDS----VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI 198
N V S + I +VD+HN+VP+W+ S+ E A+T++ KI + +LI+Y LE
Sbjct: 740 NLVELSNIKKIKILQVDSHNIVPIWITSKIEESCARTIKPKIQTHISTFLIEYVQLEM-- 797
Query: 199 EKWTGTRQSIDWDSII--------AAVLRKGA---EVPEIGWCESGEDAAMEVLKGSKDG 247
+D II + V +K P + E A E+L+
Sbjct: 798 -----------FDQIIKYPEPFSISEVFKKLTVYIPCPVLLNFVCTEQKAHEILQN---- 842
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT---- 303
F +K+L+ Y +N+P ++ L+PY++FG IS+QRC LE K P +I+T
Sbjct: 843 FCSKKLERYSLKKNDP-NSEMINLLTPYINFGIISSQRCVLEVNKYANSYP-SINTISGK 900
Query: 304 --FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
F EE+I+++ELADNFC+Y NYD+ G +WA+ SLK H SDKRE++Y + F+ A+T
Sbjct: 901 ELFSEEMIMKKELADNFCYYNKNYDNFNGGKDWAKDSLKKHDSDKREYLYDFDDFKNAKT 960
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
D LWN Q++++ G +H F+RMYW KKIL W+ + AL A+ LND + ID + P+G
Sbjct: 961 HDDLWNCCQLQLINEGIIHEFLRMYWCKKILNWSGNSKTALKCAMKLNDDFSIDAKSPHG 1020
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
YV M SI G+HDQ W ER VFGKIR MNY+ CKR FD++ Y++
Sbjct: 1021 YVSIMSSIMGIHDQSWNERTVFGKIRSMNYNSCKRLFDINVYMS 1064
>gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1]
gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum
hungatei JF-1]
Length = 448
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 255/457 (55%), Gaps = 21/457 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+QP RI + + K ++YWM R R N AL +A++++N+ P+ V F L
Sbjct: 2 IQPERITSFN--NQEPKGSYILYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHS 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A F+ GL+ + R++ E I F + G D IP + A ++VTD
Sbjct: 60 YPEATPVHYRFLWEGLQDVNRSLTER-GIGFQILSGSPVDIIPRIADD--ACMMVTDQGW 116
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
R R + K+ + V I V+ + +VPV VAS K E+SA T R KI + LP +L
Sbjct: 117 TRLQREWRQKVIDTAPCKVVI--VETNLIVPVHVASPKEEWSAGTFRPKITRQLPAFL-- 172
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE---IGWCESGEDAAMEVLKGSKDG 247
+P++ + ++ + + + A G +PE + GE+AA L
Sbjct: 173 HPLICRHVQGESTDCEPFTGLPVGAEQQFTGKPLPEDTSTQFLPGGENAADHYLSA---- 228
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL++ + Y N+P A S LS YLHFG IS AL R P + FLE+
Sbjct: 229 FLSETIDRYEATHNDPTA-HATSYLSAYLHFGHISPLDIAL--RVMEHPGP-GTNAFLEQ 284
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
LIVRREL+ NF +Y P YD +G EW RKSL+ H D RE+ YT FE+ +T D WN
Sbjct: 285 LIVRRELSHNFVWYNPLYDHYEGLPEWTRKSLEKHRIDTREYSYTPADFEECRTHDRAWN 344
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A Q+ M+ G +HG++RMYW KKILEWT PE+A AIA+YLN++YE+DGRDPNGY G W
Sbjct: 345 AMQLSMIRTGYLHGYLRMYWGKKILEWTETPEDAYAIALYLNNRYELDGRDPNGYCGVAW 404
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
G HD+ WKERPVFG IRYMN +G +RKF +DG++
Sbjct: 405 CF-GKHDRPWKERPVFGTIRYMNEAGLRRKFRLDGWV 440
>gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia]
Length = 453
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 180/461 (39%), Positives = 265/461 (57%), Gaps = 22/461 (4%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RI+ L ++ K V YW+ QR + N AL A+ +AN+ +P+ F L ++ A
Sbjct: 4 RIKYLNDKKVNVKGKYVAYWIQASQRTKYNHALELAIQKANQEQIPLFCFFGL-TKYPAA 62
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R FML GL+ L+ ++ + +ILF + + +D + + A LL+ D LR
Sbjct: 63 NQRPYHFMLEGLQQLKTSLADR-KILFGVAKQSPDDLAISIAQ--NAKLLIVDCGYLRIQ 119
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--IDYP 192
++ + K+ + + E D +VPV AS+K E++AKT+R KI L + ++
Sbjct: 120 KQWRKKVADTIDCQFIQVETDV--LVPVEQASQKEEWAAKTIRPKIQSLTKYFAKELNEE 177
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDGFLT 250
L + ++K Q D +I + G + V + + GE A + L + FL
Sbjct: 178 TLVKQMDKLPF--QEYDISNITKVIDDLGVDKSVSIVQQFKGGEIEAQKRL----EEFLN 231
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELI 309
K+LKNY +RN+P A S LSPYLHFG IS LEA K P E+ ++FLEELI
Sbjct: 232 KKLKNYAKNRNDP-SLNATSNLSPYLHFGMISPLHIYLEAMK---FPPSESRESFLEELI 287
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRREL+ NFC+Y YD +G +WA+ +L++HA DKR++IYT +Q EKA+T D WN++
Sbjct: 288 VRRELSMNFCYYNDLYDKYEGLPDWAKNTLQEHAKDKRDYIYTLDQLEKAKTHDVYWNSA 347
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q+E ++ GK+ G+MRMYW KK++EWT P++A ++LNDKY +DGRD NGY G W
Sbjct: 348 QLEAIHKGKISGYMRMYWGKKVIEWTESPQQAFEYLVFLNDKYHLDGRDANGYTGVAWCF 407
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
G HD+ W R +FG IRYM SG KRKFD Y+ V ++
Sbjct: 408 -GKHDRPWTGRKIFGNIRYMIDSGLKRKFDTGQYVMNVNQL 447
>gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Granulicella tundricola
MP5ACTX9]
gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Granulicella tundricola
MP5ACTX9]
Length = 470
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 253/459 (55%), Gaps = 15/459 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
Q R+ + + GS D K VVYWM R QR DN A+ AV+ AN +P+ V F
Sbjct: 10 TQNPRVTIRRDGSPDPKGRCVVYWMQRAQRGIDNHAVNLAVEVANHLGLPLVVYFAAISN 69
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A R F+ +GL ++ ++ + + FL + ++ + + A++++ D +P
Sbjct: 70 FPHANLRHYAFLNQGLPDIEEDLAA--RNITFLMRRAPHESHEQLLADVKAAIVIGDENP 127
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+RE R + + ++ + VD V+P + EK +Y A T+R ++ +LLPEYL+
Sbjct: 128 MREPERWRKTLAEKIR--IPFWTVDTDVVIPSSLI-EKAQYGAYTIRPRLYRLLPEYLVP 184
Query: 191 Y--PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
Y P + P + + + I V + + + G A + LK F
Sbjct: 185 YENPHAQHPWHRPKSFKSDSVHEDITMGWKDLDRSVGPVEYWKGGTHAGLAQLKR----F 240
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE---AIDTFL 305
TK L +Y RN P + S +SPYLH+G + Q AL A K P+ A D++
Sbjct: 241 TTKLLGDYEVQRNKP-EADGTSSMSPYLHYGHLGPQTIALAVDAAAKANPKLQSARDSYF 299
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
ELI RELA NF + YD+ + A WA+K++ +HA D+REHIYT +Q E A+T D L
Sbjct: 300 NELIAWRELAVNFVRFSSVYDTAECAENWAQKTIAEHARDEREHIYTTKQLEFAETYDTL 359
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
WNA+Q++MV +G MH +MRMYWAKKILEWT + A+ + +YLNDKY IDGRDPNGY G
Sbjct: 360 WNAAQIQMVRHGWMHNYMRMYWAKKILEWTPDVDTAMKVCVYLNDKYFIDGRDPNGYAGI 419
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
W+I G D+ W RPVFGK RYM+ + +KFD YI
Sbjct: 420 AWAILGKFDRAWGTRPVFGKRRYMSGASTSKKFDSKAYI 458
>gi|389584197|dbj|GAB66930.1| deoxyribodipyrimidine photolyase [Plasmodium cynomolgi strain B]
Length = 566
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 247/434 (56%), Gaps = 19/434 (4%)
Query: 40 RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQI 99
RV DNWAL +A + A K + +A ++ R + L+ L+ L++ +++ I
Sbjct: 95 RVNDNWALTYAYEIAKKKGFSL-IACTCLNRKEKVTNRFIYTKLKILKNLEQALKQ-INI 152
Query: 100 LFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS-VTIHEVDAHN 158
F+L D + F++ L+ D L + + +C+ + V + +VDAHN
Sbjct: 153 PFYLLPLYMIDELGEFIKTHQVKLISCDLHVLHDEKAFIKSLCHLCNKKKVKMIQVDAHN 212
Query: 159 VVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA--A 216
VVP+WV S+ E S +T++ KI LLP +LI+Y ++ P E+ D + +++
Sbjct: 213 VVPMWVTSKVEECSVRTIKPKIQALLPTFLIEYVSID-PFEQNLKFPNPFDIEDVVSKLT 271
Query: 217 VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
V A +P+ E A E+L F K L Y RN+P A S L PY+
Sbjct: 272 VSNTCAVIPDFVLTEK---KAQELL----SDFCRKVLDKYNVKRNDP-NSDAGSVLLPYV 323
Query: 277 HFGQISAQRCALEARKARKLCPE-----AIDTFLEELIVRRELADNFCFYQPNYDSLKGA 331
+ G ISAQRC LE K P ++F ++ I+R+ELADN+C+Y NYD+ +G
Sbjct: 324 NLGVISAQRCVLEVHKHAYSNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYDNFEGG 383
Query: 332 WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI 391
+WA++SLK H SDKRE++Y E F A+T +WN QM+ + G MH F++++WAKKI
Sbjct: 384 RDWAKESLKKHDSDKREYLYDYEDFRSAKTHSDMWNCCQMQFIKEGIMHEFLKVFWAKKI 443
Query: 392 LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNY 451
L W+ + AL A+ LND++ IDG+ P+GY+ MWSI GVHDQ W ER +FGK+RY+N
Sbjct: 444 LNWSGNSQTALKYALQLNDEFSIDGKTPSGYISIMWSIMGVHDQSWNERSIFGKVRYINS 503
Query: 452 SGCKRKFDVDGYIA 465
+GCKR FD++ +++
Sbjct: 504 NGCKRNFDMNAFMS 517
>gi|452819842|gb|EME26893.1| deoxyribodipyrimidine photo-lyase isoform 2 [Galdieria sulphuraria]
Length = 505
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/487 (35%), Positives = 261/487 (53%), Gaps = 52/487 (10%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R+RVL + + R V+YWM R+ N+AL +AV AN+ P+ + F L +
Sbjct: 5 VSNQRVRVLNNKPVQESREFVLYWMQAAVRLTYNYALQYAVFSANQLGKPLLICFGLTES 64
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A AR F+L GL+ +QR + E ++ +F E E + + A +V D +
Sbjct: 65 FPEANARHYAFLLEGLQDVQRQLAER-KLSMVVFHSEPEQMVEKLFHK--AVQVVVDMNY 121
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI----NKLLPE 186
LR + + ++ + + S +V+ VVPV + ++K EY+A+T+R K+ NK L
Sbjct: 122 LRVTKNWRQRVASNIDCSFI--QVETECVVPVELVTDKEEYAARTIRPKLWKHANKFLIP 179
Query: 187 Y---------LIDYPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
+ L+D P +++ + G + + L VP + GE
Sbjct: 180 WADTIHVENQLVDIPQIDELTVLDLQGEAKEL------VERLNVDKTVPPVSHFVGGETE 233
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNP------------LKPRA-----LSGLSPYLHFG 279
A L F +L++Y RN+P + RA +S +SPYLHFG
Sbjct: 234 AKRRLAE----FCRSKLRDYEKKRNDPSLNCGKVVFLVFVCWRAKYLCLVSHMSPYLHFG 289
Query: 280 QISAQR--CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
IS C ++ +A K C D F+EE+ +RREL+ NFC+Y YD+ WA++
Sbjct: 290 HISPVEIVCQVQQAQASKTCK---DAFIEEVFIRRELSFNFCYYCDKYDAFDCLPTWAKQ 346
Query: 338 SLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTG 397
++ +H+ D R+ YT EQ E A T DP WNA+Q+EMV GKMH +MRMYW KK++EWTT
Sbjct: 347 TMSEHSKDPRQFSYTLEQLETAVTHDPYWNAAQLEMVQTGKMHNYMRMYWGKKVIEWTTN 406
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
PEEA I +YLN+KYE+DGRDPN + G W G HD+ ERP+ GK+RYM+ G +RK
Sbjct: 407 PEEAFRILLYLNNKYELDGRDPNSFTGVAWCF-GKHDRAHMERPITGKLRYMSAEGLRRK 465
Query: 458 FDVDGYI 464
F+++ Y+
Sbjct: 466 FNIESYV 472
>gi|221057079|ref|XP_002259677.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase) [Plasmodium knowlesi strain H]
gi|193809749|emb|CAQ40451.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium knowlesi strain H]
Length = 923
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 162/439 (36%), Positives = 253/439 (57%), Gaps = 23/439 (5%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
RD RV DNWALI+A + A K + + +A ++ R + L+ L+ L+ ++++
Sbjct: 449 RDFRVNDNWALIYAYEMAKKKGLTL-IACTCLNRKEKVTNRFIHTKLKILKNLEYSLKK- 506
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR---RCKDKICNRVSDSVTIHE 153
I F++ D F++ ++ D L + + + +CN+ V + +
Sbjct: 507 INIPFYMLPLYMIDEFGEFMKTHQVKIITCDLHVLNDEKAFIKSLSHLCNK--RKVKMFQ 564
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
VD+HN+VP+WV S+ E S +T++ KI LLP +LI+Y +E P + + D D +
Sbjct: 565 VDSHNIVPMWVTSKMEECSVRTIKPKIQALLPTFLIEYMSIE-PFVQNLKFPEPFDIDEV 623
Query: 214 IA--AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSG 271
+ +V A VP E A E+LK F +K L Y RN+P A S
Sbjct: 624 LNKLSVSNTCAVVPNFVLTEK---KAEELLKD----FCSKVLDKYNVKRNDP-NSDAGSV 675
Query: 272 LSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLEELIVRRELADNFCFYQPNYD 326
L PY++ G IS+QRC LE K P ++F ++ I+R+ELADN+C+Y NYD
Sbjct: 676 LLPYVNLGIISSQRCVLEVHKHAYNNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYD 735
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
+ +G +WA++SLK H +DKRE++Y E F A+T + +WN Q++++ G MH F+++Y
Sbjct: 736 NFEGGRDWAKESLKKHDADKREYLYDYEDFRSAKTHNDMWNCCQLQLINEGIMHEFLKVY 795
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
WAKKIL W+ + AL A+ LN++ IDG+ PNGYV MWSI GVHDQ W E+ +FGKI
Sbjct: 796 WAKKILNWSGNSQTALKYALQLNNELSIDGKTPNGYVSIMWSIMGVHDQSWNEKNIFGKI 855
Query: 447 RYMNYSGCKRKFDVDGYIA 465
R++N +GCKR FD++ +++
Sbjct: 856 RFINSNGCKRNFDLNMFMS 874
>gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 465
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 267/476 (56%), Gaps = 33/476 (6%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ ++ RI++L + + + G V+YWM + QR N AL +A+ +AN PV V F L
Sbjct: 3 NSLIEEERIQILNKQDV-QPGGYVLYWMQQSQRAEYNHALEYAIQRANDLQQPVVVCFGL 61
Query: 68 FDQFLGAKARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECG-- 120
+ G+ R FML GL+ L+QR I+ F + G N E G
Sbjct: 62 MADYPGSNLRHYTFMLEGLQDTEQALIQRGIK------FVMRYG----NPDQIALELGKD 111
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
ASL+V D LR R+ +D + + +V++ VVPV AS K +Y+A+T+R +I
Sbjct: 112 ASLVVCDRGYLRFQRQWRDNVAQNAP--CQVVQVESEVVVPVETASVKADYAARTIRPRI 169
Query: 181 NKLLPEYLIDYPMLEQPIEKWTG--TRQSIDWDSI--IAAVLRKGAEVPEIG-WCESGED 235
++ L +L+ P P++ + +S+D +I + A L VP + + G
Sbjct: 170 HRHLDRFLV--PFASTPVQHSSLHLDLKSLDLSNIEAVLAKLPLDCSVPPVSSLFQGGTT 227
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
A E+L + FL K Y RN P + +S +S YLHFGQIS AL+ +
Sbjct: 228 RAKEIL----EKFLQKSFAIYADHRNQP-QTDDVSYMSQYLHFGQISPLYLALQIQSMGN 282
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+ + +DT++EELIVRRELA NF +Y P+YD+ WA+ +L +H D R Y+ EQ
Sbjct: 283 VPRDNVDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNWAKTTLDNHRHDPRTPCYSLEQ 342
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEID 415
++++T DP WNA+ EM + G MH +MRMYW KKI+EWT PE A A+ LN+KY ID
Sbjct: 343 LDESRTEDPYWNAAMREMKHTGYMHNYMRMYWGKKIIEWTETPELAFQTALDLNNKYFID 402
Query: 416 GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
GRD N Y G W + GVHD+GW+ERP+FG +RYM SG KRK D+DGYI V + V
Sbjct: 403 GRDANSYTGVAW-VFGVHDRGWRERPIFGTVRYMAASGLKRKCDIDGYIKKVNQRV 457
>gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
DSM 9941]
gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
DSM 9941]
Length = 464
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 176/468 (37%), Positives = 250/468 (53%), Gaps = 15/468 (3%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
+ +Q R+R L + V+YWM QR N AL +AV QAN + F L
Sbjct: 3 TAGIQQERVRHLNHRGPRESGEYVLYWMQASQRAEHNHALEYAVRQANALGRSLVCVFGL 62
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
D + A R FML GL +++ + I F + +G ++ R A+L+VTD
Sbjct: 63 TDGYPEANLRHYAFMLEGLADVEKGLRRR-GIGFAVRRGSPDEVALEAGRR--AALIVTD 119
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
LR R ++ + VT +V++ +VPV AS++ EY+A+T R ++++ L +
Sbjct: 120 RGYLRHQVRWRENVAAEAGCRVT--QVESDVLVPVETASDRREYAARTFRPRVSRHLERF 177
Query: 188 LIDY--PMLEQP-IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L+ L +P G D ++ + P G AA +L+
Sbjct: 178 LVGLGTTALRRPSAGAGLGGLDLSDPGRVLEELDLDRGVGPVGHLYRGGTRAAKRLLRR- 236
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
FL + L Y + R+ P +S +S YLHFG IS AL AR + E + F
Sbjct: 237 ---FLEEGLPGYASGRDQP-HAGGVSHMSKYLHFGHISPLYVALRARGS-GAPEEDVGAF 291
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LEEL+VRRELA NF Y PNYDS EWAR +L++H D RE +YT+ Q E+A T DP
Sbjct: 292 LEELVVRRELAVNFVRYTPNYDSYSCLPEWARSTLEEHRGDSRERVYTRRQLEEAATHDP 351
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
WNA+ +EM + G +H MRMYW K+IL WT P+ A A+YLN++Y +DGRDPN Y
Sbjct: 352 YWNAAMVEMRHTGYLHNHMRMYWGKRILGWTRTPQHAYRTALYLNNRYFLDGRDPNSYAN 411
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
W + G+HD+ WKERPVFGK+RYM+ SG +RK D Y+ V+R+ G
Sbjct: 412 VAW-VFGLHDRPWKERPVFGKVRYMSRSGLERKTDPGAYVRRVERLTG 458
>gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
Length = 479
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 178/469 (37%), Positives = 257/469 (54%), Gaps = 33/469 (7%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+ + + G + VVYWM R QR RDN AL AV A++ +PV F F
Sbjct: 15 QDPRVTLRRAGVPNPDGRCVVYWMQRAQRGRDNAALNLAVQIADELGLPVVTYFAGISNF 74
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
A R F+ +GL ++ ++ E + + F+ + E + F + A++++ D +PL
Sbjct: 75 PHANLRHYHFLQQGLLDVENDLAE--RGIGFVLRNAPECSPVQFFADAHAAIVIGDENPL 132
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + R + + + V +D +VP + EK +Y+A+T+R ++ K LPE+L
Sbjct: 133 RAMERWRSMVAKNIE--VPYWTIDTDVIVPSKLL-EKAQYAARTIRPRLKKFLPEFLHLV 189
Query: 192 PMLEQ--PIEKWTGTRQ------SID----WDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
++ P ++W R SID W + +VL P W G AA +
Sbjct: 190 KSIDNSAPAKEWQQPRGLRHDKLSIDMTKQWPDLDRSVL------PVDEW-NGGSGAAYK 242
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L TK L NY +RN+P + S LSP+LHFG I AL RKA + P
Sbjct: 243 RLH-----LFTKNLGNYDRERNHP-ETDGTSMLSPFLHFGHIGPLTIALAVRKAIQTNPA 296
Query: 300 AI---DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
A + +L++LI REL NF Y+PNYD+ A WA+ ++ +HA D+R +Y+ EQ
Sbjct: 297 AKVSGEAYLDQLITWRELCINFVKYEPNYDTAACADPWAKVTIGEHARDERSPLYSLEQL 356
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG 416
E+A+T D LWNASQ +MVY G MH +MRMYWAKKILEW+ + A A++LND+Y +DG
Sbjct: 357 ERAETYDELWNASQRQMVYRGWMHNYMRMYWAKKILEWSPSVDVAFERAVHLNDRYFLDG 416
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
RDPNGY W++ G D+ W ERP+FGKIRYM+ + RKFD YIA
Sbjct: 417 RDPNGYGSIAWALVGKFDRAWGERPIFGKIRYMSGASTGRKFDSKKYIA 465
>gi|390959171|ref|YP_006422928.1| deoxyribodipyrimidine photolyase [Terriglobus roseus DSM 18391]
gi|390414089|gb|AFL89593.1| deoxyribodipyrimidine photolyase [Terriglobus roseus DSM 18391]
Length = 561
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 175/455 (38%), Positives = 252/455 (55%), Gaps = 15/455 (3%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ V + G+ VVYWM R +R DN AL AV+ AN+ +PV F+ F
Sbjct: 108 RVTVRRDGAPKPDGKVVVYWMQRAERGVDNPALDVAVEVANELGLPVVAFFSGVSNFPHG 167
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R F+ GLR ++ ++ E + F L ED + F ++ A++++ D +P+R
Sbjct: 168 VLRGYIFLNEGLRDVETDLRER-NVPFILRNAPHEDRL-QFFQDVDAAIVIGDENPMRVP 225
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY--P 192
+ ++ +++ + VDA +VP EK Y+A T+RG++ K+LPEYL + P
Sbjct: 226 EGWRKQVQSKLK--MPFWTVDADVIVPT-KRYEKAPYAAYTIRGRLWKMLPEYLEESTNP 282
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ K G R + + V + + G AA+ LK F+T
Sbjct: 283 RAKHTWHKPHGFRSDDPQEDMTKGWKDLDRTVGKAEDLDGGSHAALRRLKH----FVTHL 338
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEELI 309
L +Y RN+P + S LSPYLHFG IS R LE KA P E+ D+FL+E++
Sbjct: 339 LPSYAQQRNHP-EVDGTSLLSPYLHFGHISPLRIYLEIEKAAAANPKLRESADSFLDEMV 397
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
REL + + PNYD+ + A WARK+++ HA DKREH+YT +Q E A+T D LWNA+
Sbjct: 398 TWRELCIAWVKWDPNYDNPETAEAWARKTVEAHAHDKREHLYTLKQLEPAETYDELWNAA 457
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q +MV G MH MRMYWAKK+LEW+ +A+ I+LNDKY +DGRDP GY G W++
Sbjct: 458 QRQMVRRGWMHNMMRMYWAKKVLEWSHSNADAMKALIHLNDKYFLDGRDPGGYAGIAWAV 517
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
G D+ W ERP+FGKIRYM+ + RKF+ YI
Sbjct: 518 YGKFDRPWGERPIFGKIRYMSGASTGRKFNSRAYI 552
>gi|383789019|ref|YP_005473588.1| deoxyribodipyrimidine photo-lyase [Caldisericum exile AZM16c01]
gi|381364656|dbj|BAL81485.1| deoxyribodipyrimidine photo-lyase [Caldisericum exile AZM16c01]
Length = 448
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/459 (37%), Positives = 250/459 (54%), Gaps = 14/459 (3%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GR ++LK ++ V+YWM QRV N AL A+++AN+ P+ V F + + F
Sbjct: 2 GRTKILKDLHINSYGKFVLYWMQSSQRVVYNLALYEAINKANEIKKPLVVLFVINENFPY 61
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
R FML GL+ + + + I F + G+ ++ +F + AS+L+ D +
Sbjct: 62 GSRRNFLFMLEGLKEVYEELHK-LGIKFVVHVGDPVKHVVDFSK--NASILIMDVGYTKL 118
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+R + I V+ + + V+ + +VPV +AS K EY+A T+R KI K L +YL M
Sbjct: 119 LREWRKNIVESVN--IPVLSVEDNVIVPVEIASNKEEYAAYTIRRKIQKQLNDYLKPLNM 176
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+ S D + A+ L + E + + G A E+L + F+
Sbjct: 177 PQIAFPPLREILFSFDVRNPKDAINRLHFRYNISETCYFKGGYSNAKEIL----NEFIQN 232
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
+L NY ++ N S LSPYLHFGQIS AL ++ E + FLEELI+R
Sbjct: 233 KLPNY-FEKKNDFSESFTSNLSPYLHFGQISPIEIALSVLESSVEQHEK-EAFLEELIIR 290
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RELA NF +Y P YD L+G W ++L+ H D R + Y+ Q E A+T DPL+NA+
Sbjct: 291 RELAFNFVYYNPRYDRLEGLEHWEYETLQRHKFDIRTYRYSFSQLENAETHDPLFNAAMT 350
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
E+V GKMHG++RMYW KK++EW+ P+ A LN+KY +DGRDPN Y G W G
Sbjct: 351 ELVKTGKMHGYLRMYWGKKVIEWSESPDIAFKYLEELNNKYALDGRDPNSYAGIAWCF-G 409
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
HD+ +KERP+FGK+RYM+ +KFDV YI VK +
Sbjct: 410 KHDRPFKERPIFGKVRYMSEKSIYKKFDVKKYIEKVKNL 448
>gi|156095570|ref|XP_001613820.1| deoxyribodipyrimidine photolyase [Plasmodium vivax Sal-1]
gi|148802694|gb|EDL44093.1| deoxyribodipyrimidine photolyase, putative [Plasmodium vivax]
Length = 973
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 27/453 (5%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKN--NVPVAVAFN----LFDQFLGAKARQ 78
+++R ++ + RD R DNWAL +A + A K N+ N L +F+ AK +
Sbjct: 487 NEQRDALLLLLTRDFRANDNWALTYAYELAKKKGLNLIACTYLNRKEKLTSRFINAKLKV 546
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCK 138
L + + L+ Q NI LF + D F++ ++ D L + R
Sbjct: 547 LKNLEQALK--QMNIPFYILPLFMI------DEFKEFIKTHHIKVIACDLHVLNDERAFI 598
Query: 139 DKICNRVSD-SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+C+ + V + +VD+HNV+P+WV S+ E S +T++ KI LLP +L +Y +L P
Sbjct: 599 KSLCHICNKRKVKVFQVDSHNVIPIWVTSKGEECSVRTIKPKIQALLPTFLTEYVLL-SP 657
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
E+ + D + + A+ L + E A E+L F + L Y
Sbjct: 658 FEQKIKFPEPFDMEEV-ASKLTVTNTCAVVSGAVFTEKKAQELL----SHFCRQVLDKYN 712
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLEELIVRR 312
RN+P A + L PY++ G ISAQRC LE K P ++F ++ I+R+
Sbjct: 713 VKRNDP-NSDAATVLLPYVNMGVISAQRCILEVHKHAYSNPSINAVSGKESFTDDFIMRK 771
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
ELADN+C+Y NY + +G +WA++SLK H +DKRE++Y E F A+T LWN Q++
Sbjct: 772 ELADNYCYYNRNYCTFEGGRDWAKESLKKHDADKREYLYDYEDFRTAKTHSDLWNCCQLQ 831
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
++ G MH F+++YWAKKIL W+ + AL A+ LN+++ IDG+ P+GYV MWSI GV
Sbjct: 832 LIDEGVMHEFLKVYWAKKILNWSANSQVALKYAMQLNEEFSIDGKTPSGYVSIMWSIMGV 891
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
HDQGW ER +FGK+R++N +GCKR FD++ +++
Sbjct: 892 HDQGWNERNIFGKVRFINSNGCKRNFDMNMFMS 924
>gi|269122091|ref|YP_003310268.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
33386]
gi|268615969|gb|ACZ10337.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
33386]
Length = 453
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 173/463 (37%), Positives = 269/463 (58%), Gaps = 17/463 (3%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
RI+ + +DK ++YWM R R N +L +A+ AN + V F +F
Sbjct: 3 ENRIKSINNKKMDKNGDFIIYWMQRSIRSSYNHSLEYAIHLANDLKKNLLVIFCFDRKFS 62
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL-LVTDFSPL 131
R F+ L+ ++N+++ I F + ++ I + S+ ++TD + L
Sbjct: 63 EMNERSCYFLFESLKDAEKNLKDR-GIRFIVL--DSSPLITKILEYSKRSVCIITDRAYL 119
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL-ID 190
+ +R+ ++++ +VS V + ++++ VVP+ +AS K EYSA+TLRGK++K+L YL D
Sbjct: 120 KYLRKIREEVGEKVS--VRMIQIESDVVVPIEIASLKEEYSARTLRGKLHKVLDFYLNKD 177
Query: 191 YPMLEQPIEKWTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
+ + + + D + I I L V + + GE+ A ++L + F
Sbjct: 178 FEYTKYEMNYLDEIKTDFDLEKIHEIIESLNIDKTVRKSNYFTGGENTAKKIL----ENF 233
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
++++L+ Y RNNP + S LSPYLHFG IS A E K+ K E+++ FLEEL
Sbjct: 234 ISEKLEGYSKFRNNP-ELEYQSNLSPYLHFGNISPLFVAKEISKSEK-NRESLEEFLEEL 291
Query: 309 IVRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
IVRRELA NF +Y +YD + + WA +++ H +D++E++Y+ E EK++T D WN
Sbjct: 292 IVRRELAINFIYYNQDYDKFQNMTYLWAYETMNKHKNDQKEYVYSLEILEKSETHDEYWN 351
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
++Q EM+ GKMHG+MRMYWAKKI+EWT EEA I YLN+KY IDGRD NGY G W
Sbjct: 352 SAQKEMMVTGKMHGYMRMYWAKKIIEWTEKFEEAYEIIKYLNNKYFIDGRDENGYAGIAW 411
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
G HD+ W ER +FGK+RYMN +G KRKFD++ Y+ + ++
Sbjct: 412 CF-GKHDRAWNERNIFGKLRYMNSNGLKRKFDIEKYVEKINKL 453
>gi|449016433|dbj|BAM79835.1| probable class II DNA photolyase [Cyanidioschyzon merolae strain
10D]
Length = 591
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 270/502 (53%), Gaps = 29/502 (5%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ V+P R+RV + R V+YW+ R+ +N AL +A+++AN N P+ F +
Sbjct: 88 ASTVEPERVRVANTKPVYPDRRYVLYWVQASPRILENHALEYAIERANALNKPLVACFGV 147
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
D++ A R F+L GL L ++ + + F + G ++ R A +VTD
Sbjct: 148 TDKYPEANLRHYRFLLEGLSELWEDLRKKRGVAFHVLYGPPDEVAAQCARG-AACEVVTD 206
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
+R R+ ++++ + +T+ E +A VVPV +ASEK E++A+TLR +I + +
Sbjct: 207 LGYMRIQRQWRERLAQALDCRLTLVESEA--VVPVELASEKHEFAARTLRPRIWAYIQRF 264
Query: 188 LI-------DYPMLEQPIEKWTGTR--------QSIDWDSIIAAVLRKGA---EVPEIG- 228
+ + LE P++ + S + I AA+ R + VP +
Sbjct: 265 CVPQAPQTLHHSQLEIPVDHGPYSELFEECPIDDSEAPERIDAALERLESLDRSVPAVSR 324
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
+ G A+ L + F + +L Y RN P + S LS YLHFGQIS AL
Sbjct: 325 YFRGGTSEALRRL----EIFCSTKLSFYGEGRNQP-QSDHTSCLSAYLHFGQISPITIAL 379
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKR 347
++ E+ D F+EELIVRREL+ N C+Y+P+ YD L EW ++ +H D R
Sbjct: 380 AVWSRKETPRESRDAFIEELIVRRELSFNHCWYRPDDYDKLDSLPEWVHRTYAEHRDDPR 439
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIY 407
EH+Y E+AQT DP WNA+Q EMV G+MHG MRMYWAKK++EWT E A IY
Sbjct: 440 EHLYDLASLEQAQTHDPYWNAAQKEMVLTGRMHGMMRMYWAKKVIEWTPSWECAFDWLIY 499
Query: 408 LNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
LN+KYE+DGRD N +VG +WS G+HD+ ER +FGK+R+M+ G +RKF + Y+ +
Sbjct: 500 LNNKYELDGRDANSFVGVLWSF-GLHDRAHAERAIFGKLRWMSRDGLERKFPMHAYLERI 558
Query: 468 KRIVGGTKKRRADSLVSGKEKE 489
+ + G A S + K+
Sbjct: 559 RALDNGASWEDAVSSAASATKD 580
>gi|83315336|ref|XP_730750.1| DNA photolyase [Plasmodium yoelii yoelii 17XNL]
gi|23490568|gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii
yoelii]
Length = 849
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 163/457 (35%), Positives = 250/457 (54%), Gaps = 27/457 (5%)
Query: 21 QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKN--NVPVAVAFNLFDQFLGAKARQ 78
G+ + + V+ + RD R+ DNW++I+A D A KN N+ N ++F R
Sbjct: 343 NGNENSIKKNVLLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYINRKEKFT---ERY 399
Query: 79 LGFMLRGLRLLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR 135
+ L+ L+ N+EE F+ L F++ D F+R +V DF L +
Sbjct: 400 INIKLKVLK----NLEEEFKKLNIPFYVIPIFMIDEFMEFLRIHEIKTVVCDFHSLGYQK 455
Query: 136 RCKDKICNRVSDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ + + + + I +VD+HN++P+W+ S+ E S +T++ KI L +LI+Y L
Sbjct: 456 QFVENLVQMSNKKKIKILQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKL 515
Query: 195 EQPIEKWTGTRQSIDWDSIIAAV-LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
E+ ++ + D S+ + + V C E A E+L + F +L
Sbjct: 516 ER-FDQIIKYPEPFDIVSLYKKLTVNNSCSVLSNFVC--TEKKAREIL----EDFCKNKL 568
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLEEL 308
Y RN+P ++ L PY++ G IS+QRC LE K P + F ++L
Sbjct: 569 DKYSVKRNDP-NYDTINLLIPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDL 627
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
++++ELADNFCFY NYD+ GA +WA++SLK H DKR H+Y E F A+T + +WN
Sbjct: 628 LIKKELADNFCFYNKNYDNFNGAKDWAKESLKKHELDKRNHLYDYEDFRNARTHNDIWNC 687
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
Q++++ G +H F+RMYWAKKIL W+ AL AI L +++ IDG+ N YV M S
Sbjct: 688 CQLQLINEGTIHEFLRMYWAKKILNWSENSRTALKCAIKLTNEFSIDGKTANAYVSIMSS 747
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
I GVHDQ W ER VFGKIRYM+Y+ CKR FD++ Y++
Sbjct: 748 IMGVHDQSWNERSVFGKIRYMDYNSCKRNFDINLYMS 784
>gi|310658527|ref|YP_003936248.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [[Clostridium] sticklandii]
gi|308825305|emb|CBH21343.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [[Clostridium] sticklandii]
Length = 447
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 176/450 (39%), Positives = 250/450 (55%), Gaps = 43/450 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM QR N AL ++++ +NK +P+ V F + + F A R FML G+ +
Sbjct: 21 VLYWMQASQRSEYNHALEYSIEYSNKLKLPLIVLFIIMEDFPKANFRHFRFMLEGIEDVM 80
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDS 148
++ + +I + +GEA +P V E AS+L+TDF L+ K I +++ S
Sbjct: 81 NQLK-SRKIKMVIRKGEA---LP-IVNELSKNASILITDFGYLKHEIIMKSNIAQQLNCS 135
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI------------DYPMLEQ 196
+ V+++ ++PV V S K EY A T+R KINK++ +YLI DYP+ +
Sbjct: 136 ML--SVESNVIIPVEVTSNKEEYGAYTIRPKINKIIDKYLIELNSRLVMQSSIDYPIKSE 193
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
I S+ D I + KG V E K KD F+ + + Y
Sbjct: 194 DISDLNSFIDSLKIDKSINESIYKGGSV--------------EAEKYLKD-FIENKAQYY 238
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
+N+P + S LSPYLHFGQIS AL+ K+ ++ FLEELI RRELA
Sbjct: 239 SELKNHPGMNYS-SNLSPYLHFGQISPLYIALKIIKSD---IKSKKDFLEELITRRELAI 294
Query: 317 NFCFYQPNYDS--LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
N+ +Y NYDS K WA SL H +D ++++Y+ E+ E A+T D WN +Q EMV
Sbjct: 295 NYIYYNKNYDSDIEKILPSWAYDSLISHQNDLKDYLYSLEELENAKTHDEFWNKAQKEMV 354
Query: 375 YNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
GKMHG+MRMYW KKI+EW+ +A + A+YLND+Y IDGRD NGY G W G HD
Sbjct: 355 ITGKMHGYMRMYWGKKIIEWSLTINDAFSKALYLNDRYSIDGRDANGYAGIAWC-YGKHD 413
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+ WKER +FGKIRYMN G +KF+++ Y+
Sbjct: 414 RPWKEREIFGKIRYMNDKGLIKKFNMEKYL 443
>gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein
[Desulfobacterium autotrophicum HRM2]
gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein
[Desulfobacterium autotrophicum HRM2]
Length = 453
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 171/443 (38%), Positives = 238/443 (53%), Gaps = 12/443 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM + QR +N AL +A+ QAN+ + V V F+L + A R FML GL +
Sbjct: 21 VLYWMQQAQRAEENHALEYAIYQANQQDKMVVVVFSLTNDSPDANLRHYTFMLEGLNETR 80
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+++E+ + F G + + R+ AS++V D LR R + I + V
Sbjct: 81 KSLEKRGIRMIFRI-GHPVKEVLDIGRK--ASMIVCDRGYLRHQRAWRKAIAEKSGCPVV 137
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--IDYPMLEQPIEKWTGTRQSI 208
E D V+PV S+K EY+A T+R KI++ L +YL I++ L P + +
Sbjct: 138 QVETDV--VIPVEQVSDKAEYAAYTIRPKISRQLDQYLTPIEHIELRNPSLEIALKSTEL 195
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
+ + L + + G + K D FL + Y RN P K A
Sbjct: 196 ERIKTVLKDLNVDDSIQPVSHIFRGGTSEA---KARFDVFLDQHFSRYAVHRNEP-KYLA 251
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
+S +SPYLHFGQIS AL+ + + EA +LEELIVRRELA NF ++ P YDSL
Sbjct: 252 VSCMSPYLHFGQISPLYLALKIKACKNEAQEAAAAYLEELIVRRELAANFVYFNPYYDSL 311
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
W K+L +H D R+ +YTK Q +T D WNA+ EM+ G MH +MRMYW
Sbjct: 312 GCLPAWPTKTLAEHEKDVRDPVYTKSQLIACRTHDEYWNAAMKEMIVTGFMHNYMRMYWG 371
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
KKILEW+ P A I LN+ Y +DGRDPN Y G W I G+HD+ W ERP+FGK+RY
Sbjct: 372 KKILEWSPTPLRAYETMIDLNNAYFLDGRDPNSYAGVGW-IFGLHDRAWFERPIFGKVRY 430
Query: 449 MNYSGCKRKFDVDGYIAYVKRIV 471
M SG +RK D+ GY+ VK ++
Sbjct: 431 MAASGLERKCDIKGYVDRVKFLI 453
>gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 452
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/444 (38%), Positives = 253/444 (56%), Gaps = 28/444 (6%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++Y M R N++L A+ +ANK N P+ V+F + D++ + R FM+ G+ +
Sbjct: 21 ILYSMEASLREDFNFSLEFAIQKANKLNKPLLVSFFITDKYKHSNQRYYKFMIEGILKTK 80
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ IEE I F + + + + +E A +V D + L+ R+ ++ I + V
Sbjct: 81 KAIEER-GIKFVIQKDDYVNGTLKLSKE--AVCIVLDKNYLKTQRKWRENIAK--ASQVA 135
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+++++ VVP+ V S+K A R ++NK++ +L +P+EK S D
Sbjct: 136 VYQLENDVVVPIQVVSDKPIPYAYLYRDRLNKVIDRFL-------KPVEKIDLKVNSKDL 188
Query: 211 D---------SIIAAVLRKGAEVPEIG-WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
D ++L V + + G D A + LK F+ K+L Y R
Sbjct: 189 DVESLEFKTPDEFLSILNIDKTVSTVDKYFVGGYDEAEKRLKE----FIEKKLYKYKEFR 244
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
++P K S LSPYLHFGQIS + LE K E + +F ELIV REL+ NFC+
Sbjct: 245 SDPSKDYT-SNLSPYLHFGQISPLKIVLEVLKHYDKNDENVVSFFNELIVWRELSRNFCW 303
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
Y P Y+ +G +WAR++L++H DKR+++Y+ ++FE+A+T DP WNA+Q E++ GK+H
Sbjct: 304 YNPLYNQYEGIPQWARQTLEEHKKDKRDYVYSLQEFEEAKTHDPYWNAAQKELLKTGKIH 363
Query: 381 GFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+MRMYWAKKI+EWT P++A IA YLNDKY +DGRDPNGY G W G D+ W+ER
Sbjct: 364 NYMRMYWAKKIIEWTEDPKQAFDIACYLNDKYALDGRDPNGYGGISWCF-GTFDRPWQER 422
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYI 464
VFGKIRYMN G +RKFDV Y+
Sbjct: 423 KVFGKIRYMNDKGLERKFDVKFYM 446
>gi|444917023|ref|ZP_21237131.1| Deoxyribodipyrimidine photolyase, type II [Cystobacter fuscus DSM
2262]
gi|444711669|gb|ELW52608.1| Deoxyribodipyrimidine photolyase, type II [Cystobacter fuscus DSM
2262]
Length = 469
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 265/475 (55%), Gaps = 24/475 (5%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGP-VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
+T ++ GRI+ L + + G V+YWM + R N AL A+ +AN+ +P+ V F
Sbjct: 3 NTRIEAGRIQRL--NTRESSEGDYVLYWMQQSARAEHNPALEFAIQRANEAKLPLLVGFG 60
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
L D + A AR F+L GLR R + +I F + +G E R A+L+V
Sbjct: 61 LMDDYPEANARHYRFLLEGLRDTARALARR-RIPFVVQRGSPEVVALKLARR--AALVVA 117
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D LR ++ + + ++ + + +V+ VVPV +AS K E++A+TLR K+++
Sbjct: 118 DRGYLRHQKQWRRTLADKAA--CPVFQVEGDVVVPVDIASNKAEWAARTLRPKLHRAWDA 175
Query: 187 YLIDYPMLEQPIEKWTGTR---QSIDWDSIIAAV--LRKGAEVPEIGWC-ESGEDAAMEV 240
YL+ P+ P+ + TR + +D + + A + L+ VP + C G A+ +
Sbjct: 176 YLV--PLAPTPL-RTDSTRLEVKGLDLEDVDALLGKLKVDRGVPPVHHCFRGGTSEALRL 232
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
L+ F+T L Y R +P + +S +S YLHFGQ+S AL AR A+ P+
Sbjct: 233 LRA----FVTDHLPEYKESRPHP-ESGHVSHMSKYLHFGQVSPVVVALAARAAKAADPQR 287
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
++FLEELIVRREL NFC + P+YD+ +WAR++L H D+R+H Y+ Q E+A+
Sbjct: 288 -ESFLEELIVRRELTQNFCEFTPHYDTYDCLPKWARETLHQHRGDERQHQYSLAQLERAR 346
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
T DP WNAS EM Y G MH MRMYW KKILEW++ PE A + LN+ Y +DGRD N
Sbjct: 347 THDPYWNASMREMRYTGYMHNAMRMYWGKKILEWSSTPEHAYRTLLTLNNTYFLDGRDAN 406
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
Y W + G+HD+ W R +FG +RYM+ G +RK D+D YI V +V K
Sbjct: 407 SYANAGW-VFGLHDRPWARREIFGTVRYMSAGGLERKADMDAYIRKVDALVAEAK 460
>gi|383790370|ref|YP_005474944.1| deoxyribodipyrimidine photolyase [Spirochaeta africana DSM 8902]
gi|383106904|gb|AFG37237.1| deoxyribodipyrimidine photolyase [Spirochaeta africana DSM 8902]
Length = 466
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 179/465 (38%), Positives = 243/465 (52%), Gaps = 24/465 (5%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+ L S V+YWM R N AL +AV AN +P+AV F L +
Sbjct: 3 QRERVTTLGAASAASPHRYVLYWMQSSLRSTWNHALEYAVHHANTRGLPLAVVFCLTPDY 62
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
A+ R F+L G+R + + I + G+ I R A+L V D L
Sbjct: 63 PDAQERHYRFLLEGIRETAAKLADR-GIRLQVVAGDPPQIIAGLSRH--AALTVLDRGYL 119
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + + + + +V+++ VVPV A K YSA LR +I LL +L
Sbjct: 120 RVHAGWYRYLQSHAASPLV--QVESNVVVPVHHAYHKEAYSAGILRPRIQPLLQHFLQPI 177
Query: 192 PMLEQP------IEKWTGTRQSIDWDSI-----IAAVLRKGAEVPEIGWCESGEDAAMEV 240
P +E +E + +SID + + I+ + + GE +A +
Sbjct: 178 PEVELKNSAAIDVEDFLSDIRSIDTERVTNPDYISGFFSMDSVATAVDCFSGGELSAQQR 237
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
+ FL +RL + DRN+P + S LSPYLHFG IS + AL+AR+ E
Sbjct: 238 WQD----FLDRRLDRFHLDRNDPAAAGS-SLLSPYLHFGMISPVQMALDARECGS--SEG 290
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+D EELIVRREL+ NF Y YDS +WA ++L +HA D RE+IY E+F A
Sbjct: 291 VDVLFEELIVRRELSCNFTTYNQAYDSPDCLPDWAVRTLAEHAGDPREYIYRYEEFALAD 350
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
T DP WNA+Q ++ G MHG+MRMYW KK+LEW+ +E A I LND YE+DGRDPN
Sbjct: 351 THDPYWNAAQNQLRKTGHMHGYMRMYWGKKVLEWSKTWQEGFATLIRLNDTYELDGRDPN 410
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
GY G W G HD+ W+ERPVFGKIRYMN +G +RKFD+D Y A
Sbjct: 411 GYAGVAWCF-GKHDRAWQERPVFGKIRYMNDNGLRRKFDIDSYAA 454
>gi|255076989|ref|XP_002502150.1| predicted protein [Micromonas sp. RCC299]
gi|226517415|gb|ACO63408.1| predicted protein [Micromonas sp. RCC299]
Length = 645
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 189/513 (36%), Positives = 267/513 (52%), Gaps = 56/513 (10%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ V P R+R L +D + V+ W+ QR N AL +AV +AN+++VP+ F
Sbjct: 101 TSQVAPERLRRLNFKRVDPRGRYVLLWVQSAQRAMHNDALEYAVQRANEHDVPLVAVFGS 160
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECGASLLV 125
F A R L FM +GL L+ +E T Q+L + G E GA ++
Sbjct: 161 TAGFPHANERHLAFMYQGLVELRETLERTRGVQLLAYTPVGGGEPGEVIVAASAGAREVI 220
Query: 126 TDFS---PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVW---VASEKLEYSAKTLRGK 179
D PL + RR K +R+ + EV+ VVP++ + + E +A TLR K
Sbjct: 221 VDAGYTRPLLDWRRTLAKRADRL-----VTEVECDVVVPLYGPGGGAGRSEPAAATLRPK 275
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTR-------------------------QSID--WDS 212
I LP L + P+ + R +S+D D+
Sbjct: 276 ILSRLPA-LTRNELEPTPLRRRLAARLDAEALLLGGEGEPGMAGFARVPLWESVDACLDA 334
Query: 213 IIAAVLRKGAE---VPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
+ AAVL G + P G+ GE A+ L D FL +L NY + RN+P R
Sbjct: 335 LDAAVLGVGVDRSVKPASGYHVGGEREALRKL----DRFLESKLTNYASSRNDP-SLRLQ 389
Query: 270 SGLSPYLHFGQISAQRCALEARKARKLCPE---AIDTFLEELIVRRELADNFCFYQPNYD 326
S LSP++H+GQIS A ARK PE ++D FL+EL+VRRELA NFC P YD
Sbjct: 390 SHLSPHIHYGQISVVYVAHRARKVAAARPELRRSVDVFLDELVVRRELAINFCLNNPAYD 449
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
+ +G EWAR++L HA+D R +YT EQFE+ T D LWNA+Q E+V +GK H ++RMY
Sbjct: 450 AYEGVPEWARRTLATHATDHRSFVYTLEQFERCATHDALWNAAQRELVVSGKQHNYLRMY 509
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGK 445
WAKK+LEW+ P EA AI+LN+KY +DGRDP+ Y G W C G+HD+ + E V G
Sbjct: 510 WAKKMLEWSADPREAWCWAIHLNNKYSLDGRDPSSYTGVGW--CWGLHDREFPEAAVTGT 567
Query: 446 IRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
+R M+ +G + KF+ G Y+ R G + R
Sbjct: 568 VRRMSEAGMRSKFNA-GVSDYLNRWGDGDARSR 599
>gi|374313608|ref|YP_005060038.1| DNA photolyase FAD-binding protein [Granulicella mallensis
MP5ACTX8]
gi|358755618|gb|AEU39008.1| DNA photolyase FAD-binding protein [Granulicella mallensis
MP5ACTX8]
Length = 487
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 183/462 (39%), Positives = 253/462 (54%), Gaps = 30/462 (6%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+ V + G+ K + VVYWM R QR RDN AL A++ AN +P F F
Sbjct: 35 ARVTVRRAGAPAKGKC-VVYWMQRAQRGRDNHALDKAIEVANVLGLPCVAYFAGIKNFPH 93
Query: 74 AKARQLGFMLRGLRLLQRNIEE--TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
A R F+ +GL +IEE + + F+ + E++ F + A++++ D +P+
Sbjct: 94 ANLRHYAFLNQGLP----DIEEDCAARGVGFVMRRAPEEDHERFFADVDAAMVIGDENPM 149
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
RE R + K+ S V VDA +VP + EK ++SA R ++ + LPE+L DY
Sbjct: 150 REPERWRAKLAK--SLRVPFWTVDADVIVPSKLL-EKAQFSAGVARPRLYRALPEFLHDY 206
Query: 192 PMLEQP--IEKWTGTRQSIDWDSIIAAVLRKGAE-----VPEIGWCESGEDAAMEVLKGS 244
E P ++ W R + D I + R + +P W + G AAM+ L
Sbjct: 207 ---ENPAALKVWRKPR-GLHTDDIREDMTRGWKDFDRSVLPVAAW-QGGHHAAMKRLHL- 260
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE---AI 301
F + L+ Y DRN+P + S LSPYLHFG + AL K P+ A
Sbjct: 261 ---FCGQMLETYDRDRNHP-ELDGSSKLSPYLHFGHLGPLTIALALNAQVKRQPKLAAAR 316
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
D++ ELIV RELA NF YQP YDS A WAR ++ +H D+RE +YT Q E A+T
Sbjct: 317 DSYFNELIVWRELAVNFVRYQPEYDSPGCADNWARATIAEHDRDEREVLYTLAQLEGART 376
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
D LWNA+Q++MV G MH ++RMYWAKKI+EWT A+ AIYLND+Y +DGRDPNG
Sbjct: 377 HDELWNAAQLQMVRYGWMHNYLRMYWAKKIVEWTRNTATAMKWAIYLNDRYFLDGRDPNG 436
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
Y G W++ G D+ W ERPVFGK RYM+ + RKFD + Y
Sbjct: 437 YAGVAWAVLGKFDRAWGERPVFGKRRYMSGASTGRKFDAEKY 478
>gi|68076095|ref|XP_679967.1| DNA photolyase FAD binding domain [Plasmodium berghei strain ANKA]
gi|56500825|emb|CAH99772.1| FAD binding domain of DNA photolyase, putative [Plasmodium berghei]
Length = 812
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 250/457 (54%), Gaps = 28/457 (6%)
Query: 21 QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKN--NVPVAVAFNLFDQFLGAKARQ 78
G+ + + V+ + RD R+ DNW++I+A D A KN N+ N ++F R
Sbjct: 307 NGNENSIKKNVLLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYINRKEKFT---ERY 363
Query: 79 LGFMLRGLRLLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR 135
+ L+ L+ N+EE F+ L F++ D F+R +V DF L +
Sbjct: 364 INIKLKVLK----NLEEGFKKLNIPFYVIPIFMIDEFMEFLRIHEIKTVVCDFHSLEYQK 419
Query: 136 RCKDKICNRVSDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ + + + + + +VD+HN++P+W+ S+ E S +T++ KI L +LI+Y L
Sbjct: 420 KFVENLVQMSNKKKIKVLQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKL 479
Query: 195 EQPIEKWTGTRQSIDWDSIIAAV-LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
E+ ++ + D S+ + + V C E A E+L + F +L
Sbjct: 480 ER-FDQTIKYPEPFDIVSLYKKLTVNNSCSVLSNFVC--TEKKAKEIL----ENFCKNKL 532
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLEEL 308
Y RN+P ++ L PY++ G IS+QRC LE K P + F ++L
Sbjct: 533 DKYSVKRNDP-NYDTINLLIPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDL 591
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
++++ELADNFC+Y NYD+ GA +WA++SLK H DKR H+Y E F A+T + +WN
Sbjct: 592 LIKKELADNFCYYNKNYDNFNGAKDWAKESLKKHELDKRNHLYDYEDFRSARTHNDIWNC 651
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
Q+++V G +H F+RMYWAKKIL W+ AL AI L +++ IDG+ N YV M S
Sbjct: 652 CQLQLVNEGTIHEFLRMYWAKKILNWSENSRTALKCAIKLTNEFSIDGKTANAYVSIM-S 710
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
I GVHDQ W ER +FGKIRYM+Y+ CKR FD++ Y++
Sbjct: 711 IMGVHDQSWNERSIFGKIRYMDYNSCKRNFDINLYMS 747
>gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
versatilis Ellin345]
gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
versatilis Ellin345]
Length = 446
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/453 (37%), Positives = 243/453 (53%), Gaps = 32/453 (7%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+YWM R QR DN AL AV AN +P + F + A R F+ +G+ +
Sbjct: 1 MYWMQRAQRAFDNPALDVAVQAANALKLPCVIFFAPVPFYPHANLRHYAFLQQGIPDIAE 60
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI 151
EE + + F+ + E ++ F E A+L++ D +P+RE+R ++ ++ V +
Sbjct: 61 MAEE--RDIGFVLRRFPEHSLIKFCDEVKAALVIGDENPMRELREWREIAAKKLR--VPL 116
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE--KWTGTR--QS 207
VDA +VP + K +Y+A+ +R ++ E L+ E P KW R Q
Sbjct: 117 WTVDADVIVPSKLLG-KEQYAARIIRPRLKAHFKELLVP---CENPRAHVKWHAARGLQQ 172
Query: 208 IDWDSIIAAVLRKGAEVPEIGW--------CESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+DW +G E GW +S E L+ D F+ L YP +
Sbjct: 173 LDW---------RGTEDITEGWEIDRSVKPVDSFHGGTREALR-LLDEFVKHGLTRYP-E 221
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
R+N + LSPYLHFG I AL K+ K+ EA D FL+++I RELA N
Sbjct: 222 RHNQADENGTARLSPYLHFGHIGPHTVALAVEKS-KVPREAKDDFLDQVITWRELAINMV 280
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ P YD+L+ WA K+L +HA D R YT +Q E A+T D LWNA+Q++MV+ G M
Sbjct: 281 HFNPLYDTLECGENWAHKTLGEHAKDPRPIQYTPKQLEAAETYDDLWNAAQLQMVHAGWM 340
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
H +MRMYWAKKILEW+ P+ A A+YLNDKY +DGRDPNGY G W+I G D+ W
Sbjct: 341 HNYMRMYWAKKILEWSKSPQVAYNTAVYLNDKYFLDGRDPNGYAGIAWAIVGKFDRPWFP 400
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
RP+FG IRYM SG ++KFD + YIA + + G
Sbjct: 401 RPIFGTIRYMARSGAEKKFDAEKYIAQMYALAG 433
>gi|115379247|ref|ZP_01466362.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|310819481|ref|YP_003951839.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|115363746|gb|EAU62866.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|309392553|gb|ADO70012.1| Deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
Length = 469
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 186/468 (39%), Positives = 261/468 (55%), Gaps = 16/468 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V+ R++ LK + K V+YWM + R N AL +A+ QAN +P+ V + L D
Sbjct: 6 VEESRLKRLKDHAA-KGGDYVLYWMQQSARAEHNPALEYAIQQANAAKLPLLVGYGLMDG 64
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A R F+L GL+ QR + +I F L +G ++ R+ A+L+V D
Sbjct: 65 YPEANVRHYRFLLEGLQDCQRTLAHR-KIPFALQRGPPDEVALKLSRQ--AALVVCDRGY 121
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR ++ + + + S + +V+A VVPV AS K EY+A+TLR KI++L EYL+
Sbjct: 122 LRHQKQWRQTLAAKAS--CPVVQVEADVVVPVEAASGKAEYAARTLRPKIHRLWEEYLVR 179
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE--VPEIG-WCESGEDAAMEVLKGSKDG 247
++ + ++ D + A + R + VP + + G A VL+G
Sbjct: 180 PTSTPLEVDSLKLGVKGLNLDDVGAVLDRMALDRSVPPVHHFFRGGTSEAKRVLRG---- 235
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F+T+ L Y +R +P + +S +S YLHFGQIS AL AR+AR L P+ DTFLEE
Sbjct: 236 FVTRHLPEYQENRPHP-ETDHVSHMSKYLHFGQISPVVVALAAREARALRPQR-DTFLEE 293
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
LIVRRELA NF Y P YD WARK+L HA DKR YTK Q E+A+T DP WN
Sbjct: 294 LIVRRELAQNFAEYTPQYDDYTSLPAWARKTLAAHAGDKRPFHYTKAQLEQARTHDPYWN 353
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A+ EM Y G MH MRMYW KKILEW PEEA A+ LN+ Y +DGRD N + W
Sbjct: 354 AAMREMRYTGYMHNAMRMYWGKKILEWGRTPEEAYRTALTLNNTYFLDGRDANSFTNIGW 413
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
+ G+HD+ W R ++G +R M+ G +RK D++ Y+A V +V K
Sbjct: 414 -VFGLHDRPWGRRAIYGTVRSMSAKGLERKADMEAYLAKVDALVEEAK 460
>gi|383765520|ref|YP_005444501.1| deoxyribodipyrimidine photo-lyase [Phycisphaera mikurensis NBRC
102666]
gi|381385788|dbj|BAM02604.1| deoxyribodipyrimidine photo-lyase [Phycisphaera mikurensis NBRC
102666]
Length = 473
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 182/482 (37%), Positives = 258/482 (53%), Gaps = 25/482 (5%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
PS + RI L V+Y M R R N AL A AN+ + V +
Sbjct: 5 PSPDIHADRIAALNDAEEKADGAYVLYVMEASMRSRMNHALELAAQHANRLGKRLLVLYP 64
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
L GA RQ FML+G+ L R+ +I F + +G + + + A +V
Sbjct: 65 LVGDTFGAHRRQKHFMLQGVGPL-RDKLTARRIRFAVVEGGMAETALRYAED--ACRVVL 121
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D LR+ R +D++ N V V++ VVPV AS+K E++A+T+R KI+K L +
Sbjct: 122 DAGYLRDHRAWRDEVGNEAEVPVEE--VESDVVVPVGTASDKKEHAARTIRPKIHKRLDD 179
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG----------EDA 236
+L+ E +EK T D + +++ + G + +G+ E G EDA
Sbjct: 180 FLVALEPTE--LEKDATTMGIPDDEVDLSSDAKIGEALDRLGFGEGGVPPVPLFRGGEDA 237
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
E+L + FL+ Y RN P + +S +S YLHFG +S R AL AR KL
Sbjct: 238 GEEML----ERFLSTANGVYSDHRNQP-QTDDVSHMSKYLHFGNLSPIRIALAARD--KL 290
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
+ D FLEELIVRREL NF ++ +YD +AR++L +H D+REH+YT++Q
Sbjct: 291 SGDDRDDFLEELIVRRELTHNFVHFEEDYDKFSQLPAFARETLDEHRDDEREHVYTRQQL 350
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG 416
E A T DP WNA+Q E+V+ G MH +MRMYW KKILEWT PE +YLN+KY +DG
Sbjct: 351 EDADTHDPYWNAAQRELVHTGYMHNYMRMYWGKKILEWTNTPEYGFETTLYLNNKYFLDG 410
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
RDPN + W + G HD+GW ER +FGK+RYMN +G +RK Y+ V R+V ++
Sbjct: 411 RDPNSFANVAW-VYGQHDRGWTEREIFGKVRYMNRNGLERKAKPKAYVEKVDRLVEEAEQ 469
Query: 477 RR 478
RR
Sbjct: 470 RR 471
>gi|308802307|ref|XP_003078467.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
gi|116056919|emb|CAL53208.1| class II DNA photolyase (ISS), partial [Ostreococcus tauri]
Length = 297
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/296 (49%), Positives = 186/296 (62%), Gaps = 8/296 (2%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+YWM RDQRV DNWAL+ A D A + PV +AFNL ++LGA ARQ GFMLRGLR L+
Sbjct: 1 MYWMSRDQRVDDNWALLRACDLARERGAPVVIAFNLLTKYLGAGARQFGFMLRGLRELEA 60
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE-IRRCKDKICNRVSDSVT 150
+ E I ++ GA +V DFSPLR+ +R KD
Sbjct: 61 KARAAKATFAMTYGDEPAAAIDALAKKIGAKTIVCDFSPLRDGVRWRKDLAVLSEKRGAH 120
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR-QSID 209
+ E DAHNVVP W AS+KLE A+TLRG++ K PE+L ++P + + ++ G ++
Sbjct: 121 VEECDAHNVVPCWEASDKLEVGARTLRGRLAKRYPEFLKEFPAIPDDLVEYDGPAIDAVK 180
Query: 210 WDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
WD ++A L++G VPE+ W GE AA VL D F+ R+K Y RN+P KPRAL
Sbjct: 181 WDDLLAEALKRGEAVPEVTWAIPGETAARAVL----DDFVANRMKLY-EKRNDPSKPRAL 235
Query: 270 SGLSPYLHFGQISAQRCALEARKA-RKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
SGLSP+LHFGQISAQRCALEA+KA K P A D+F EEL+VRRELADNFC+Y P
Sbjct: 236 SGLSPWLHFGQISAQRCALEAKKAVGKASPAAYDSFFEELVVRRELADNFCYYCPG 291
>gi|301090094|ref|XP_002895279.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
T30-4]
gi|262100969|gb|EEY59021.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
T30-4]
Length = 582
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 196/537 (36%), Positives = 268/537 (49%), Gaps = 88/537 (16%)
Query: 15 RIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RI+ L +G+ + G ++YWM R + N+AL +AV AN+ +P+ V + D+ +
Sbjct: 21 RIQWLYEGTTSQPDDGYLLYWMQTSVRTKHNYALEYAVAAANELKLPLHVVYLFPDRSVT 80
Query: 74 ------------------------AKARQLGFMLRGLR-LLQRNIEETFQILFFLFQGEA 108
A R F L GL QR + F Q +
Sbjct: 81 PKLQSFQDDEWKAEAIQDANAHAFATERHALFALEGLTDAYQRLASRGLNLDVFHHQHK- 139
Query: 109 EDNIPN---FVRECG--ASLLVTDFSPLREIRRCKDKICNRVSD--------SVTIHEVD 155
E+ P + C A+L+VTD LR R DK+ + V D S I +++
Sbjct: 140 ENERPTRDELLEFCARKAALVVTDCPYLRPWRVALDKLVSSVEDKGDAGASSSFGIVQIE 199
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--IDYPMLE------------------ 195
VVP V ++K EY+A+T+R KI K L Y+ ++Y L+
Sbjct: 200 GDVVVPAAVVTDKEEYAARTIRPKITKHLDRYIAPLEYMTLDPAYYTEGKSLLAVLNEPE 259
Query: 196 --QPI-----EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW-CESGEDAAMEVLKGSKDG 247
+P+ E T + +D D + AV GW + GE AA K
Sbjct: 260 QLKPLDVTDSEAVASTLELLDVDRSVKAV----------GWHFKGGEKAASACAKK---- 305
Query: 248 FLTK-RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR--KLCPEAIDTF 304
FLT L +Y T RN P A S LS YL +G I R L A K + K E + +F
Sbjct: 306 FLTADNLVSYATKRNEP-SLDAGSDLSLYLRYGHICVVRVVLAAHKLKGVKRAKEGLASF 364
Query: 305 LEELIVRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
LEELIVRREL+ N Y Q NYDS+ +A+ +L++HA DKR+ +Y++EQ E QT D
Sbjct: 365 LEELIVRRELSVNLVVYNQDNYDSMCCLPSYAQITLQEHADDKRDQLYSREQLENYQTGD 424
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
WNA+Q E+V GKMHG+MRMYW KK+LEWT PE+ A+ LN+KY +D D N Y
Sbjct: 425 RFWNAAQRELVVTGKMHGYMRMYWGKKLLEWTRTPEDGFNAALVLNNKYALDAPDANSYA 484
Query: 424 GCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRAD 480
G W+ G HDQGWKERP+FGK+RYMN +G KRKF +D Y+ V R+ KK D
Sbjct: 485 GVAWTF-GKHDQGWKERPIFGKVRYMNEAGLKRKFRMDAYVLKVGRLAAKAKKGSGD 540
>gi|317416914|emb|CBI63255.1| deoxyribodipyrimidine photolyase 1 [Hyaloperonospora arabidopsidis]
Length = 596
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 191/527 (36%), Positives = 259/527 (49%), Gaps = 87/527 (16%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---------------G 73
G ++YWM R + N+AL +AV ANK +P+ V + D+ +
Sbjct: 36 GYLLYWMQTSVRTKHNYALEYAVAAANKLQLPLHVVYLFPDRSVLPPLPKSEDDHDDEWK 95
Query: 74 AKARQLG------------FMLRGL-----RLLQRNIEETFQILFFLFQGEAEDNIPN-- 114
A+ARQ F L GL RL R + +F + Q + +
Sbjct: 96 AEARQDASAHAFVTERHARFALEGLADAYERLASRGV--SFDVFHHTHQKQQQGKTKGDG 153
Query: 115 -----FVRECG--ASLLVTDFSPLREIRRCKDKICNRVSD----------------SVTI 151
+ C A+L+VTD LR R D + + D I
Sbjct: 154 LARNELLEVCARRAALVVTDRPYLRPWRSALDTLVASIEDREGGDDGDETGHSSAAEFGI 213
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP--MLEQPIEKWTGTRQS-- 207
+V+ VVP V + K EY+A+T+R KI K L +++ LEQ + S
Sbjct: 214 VQVEGEVVVPADVVTNKEEYAARTIRPKITKHLDRFVVSLESLTLEQSCRTDGKSLLSGL 273
Query: 208 --------IDWDSIIAA-----VLRKGAEVPEIGWC-ESGEDAAMEVLKGSKDGFLT-KR 252
+D S A +L V +GWC GE AA K FLT +
Sbjct: 274 DKHEQLKLLDVTSSKAVADTLELLDVDRNVKSVGWCFRGGETAASACAKR----FLTPDK 329
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIV 310
L NY T RN P A S LS YL +G I A R AL A K + + E + +FLEELIV
Sbjct: 330 LANYATQRNEP-SLDASSDLSVYLRYGHICAVRIALAANKLKGVTRAKEGLASFLEELIV 388
Query: 311 RRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
RREL+ N Y Q NYDS + +A+ +L++HA DKR+ +Y++++ E QT D WNA+
Sbjct: 389 RRELSVNLVVYNQDNYDSFRCLPNYAQTTLQEHADDKRDQLYSRDKLESFQTGDRFWNAA 448
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q E+V +GKMHG+MRMYW KK+LEWT PEE A+ LN+KY +D D N Y G W +
Sbjct: 449 QRELVVSGKMHGYMRMYWGKKLLEWTRSPEEGFHAALVLNNKYALDAPDTNSYAGVAW-V 507
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
G HDQGW+ERP+FGK+RYMN G KRKF +D Y+ V R+ KK
Sbjct: 508 FGKHDQGWRERPIFGKVRYMNEVGLKRKFRMDAYVLKVGRLAAKAKK 554
>gi|348690945|gb|EGZ30759.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 572
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 184/524 (35%), Positives = 261/524 (49%), Gaps = 76/524 (14%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG--------------- 73
G ++YWM R + N+AL +AV AN+ +P+ V + D+ +
Sbjct: 37 GYLLYWMQTSVRTKHNYALEYAVAAANELKLPLHVVYLFPDRSVAPPLQPVEDDEWKAEA 96
Query: 74 ---------AKARQLGFMLRGL-----RLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A R F L GL RL R + +F + +G+ + C
Sbjct: 97 VQDANAHAFATERHAQFALEGLADAHERLAGRGL--SFDVFHHRHKGDERPARNELLEFC 154
Query: 120 G--ASLLVTDFSPLREIRRCKDKICNRVSD---------SVTIHEVDAHNVVPVWVASEK 168
A+L+VTD LR R DK+ + V D I +V+ +VP V
Sbjct: 155 ARKAALVVTDRPYLRPWRAALDKLVSAVEDDGDAGSSNAGFGIVQVEGDVIVPAAV---- 210
Query: 169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR--------------QSIDWDSII 214
Y+A+T+R +I K L Y++ P+ +E+ T + +D S
Sbjct: 211 --YAARTIRPRITKHLDRYVV--PLQSVSLEQEYQTEGKSLLAVLGSPKPLKPLDVTSSE 266
Query: 215 AAVLRKGA-----EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A G V + W G +AA +K +L +Y T+RN P A
Sbjct: 267 AVAKTLGLLDVDRSVKAVSWHFRGGEAAASAC--AKKFLTPDKLASYATERNEP-SLDAG 323
Query: 270 SGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFY-QPNYD 326
S LS YL FG IS R L A K + + E + +FLEELIVRREL+ N Y Q NYD
Sbjct: 324 SDLSLYLRFGHISVVRVVLAAHKLKGVTRAKEGLASFLEELIVRRELSVNLVAYNQQNYD 383
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
S++ +A+ +L++HA DKR+ +Y++E+ E QT D WNA+Q E+V GKMHG+MRMY
Sbjct: 384 SMRCLPSYAQITLEEHAGDKRDQLYSREKLESFQTGDRFWNAAQRELVVTGKMHGYMRMY 443
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
W KK+LEWT PE+ A+ LN+KY +D DPN Y G W+ G HDQGWKERP+FGK+
Sbjct: 444 WGKKLLEWTPTPEQGFNAALVLNNKYALDAPDPNSYAGVAWTF-GKHDQGWKERPIFGKV 502
Query: 447 RYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKEKEL 490
RYMN +G KRKF +D Y+ V R+ KK A+ + E+E+
Sbjct: 503 RYMNEAGLKRKFRMDAYVLKVGRLAAKAKKGSAEEGPADPEEEV 546
>gi|402466497|gb|EJW01974.1| deoxyribodipyrimidine photolyase [Edhazardia aedis USNM 41457]
Length = 460
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/426 (37%), Positives = 242/426 (56%), Gaps = 19/426 (4%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
K + V+Y M RD R+ DN +LI A + + + + L + Q FM G
Sbjct: 12 KHKKNVLYIMQRDHRIYDNHSLIFAYNMSVMHKSQFYIGIELTK--IKRNKLQDTFMTEG 69
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV 145
L + ++ E+ +F L +++ F + +VT+FSPLRE +++I
Sbjct: 70 LLEMHKDCEKLNYNIFIL------NSLSKFKFKFDIDCIVTEFSPLREYIEFQNEIKTFC 123
Query: 146 SDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
++ V + D+HN+VP + + ++ + K ++ ++NK +Y+ + +E + T
Sbjct: 124 EENQVAFYICDSHNIVPAKILDKYVK-TPKAVKIRLNKESKKYVNE---IENVGKHLYNT 179
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
I DS L + + + G M + FL ++LKNY +RN+P+
Sbjct: 180 SMEI-CDSYTPFNLMQKPQYKNYTKFKGGYRHGMNEF----NFFLREKLKNYKINRNDPM 234
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
K +S LSP+LHFGQIS R LE+ K + E ++ ++ E+ RE+A++FC +
Sbjct: 235 KDN-ISNLSPWLHFGQISPLRLMLESLKKFEHSNENLECWISEMFFWREIAEHFCMHTKE 293
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
YDS+KGA WA+++L H DKR+ IY+ + E A+T D WN+ Q E++ GKMHG++R
Sbjct: 294 YDSIKGALPWAQETLNLHKVDKRDIIYSLDALENAKTHDEQWNSGQKELLLTGKMHGYVR 353
Query: 385 MYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
MYWAK +L+WT+ PE+AL AIYLNDKY IDG DPNGY+G MWSICGV DQGW E+ +FG
Sbjct: 354 MYWAKSLLKWTSSPEKALEYAIYLNDKYSIDGNDPNGYLGVMWSICGVMDQGWAEKKIFG 413
Query: 445 KIRYMN 450
KIR MN
Sbjct: 414 KIRSMN 419
>gi|9964339|ref|NP_064807.1| putative CPD photolyase [Amsacta moorei entomopoxvirus 'L']
gi|9944548|gb|AAG02731.1|AF250284_25 AMV025 [Amsacta moorei entomopoxvirus 'L']
Length = 453
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 253/458 (55%), Gaps = 31/458 (6%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+++ K+ +D V+Y +RD RV DNW+ +++ + A NN + V + L ++
Sbjct: 9 NRVKIHKK--IDTINKNVLYLAYRDLRVYDNWSFLYSQNIAYLNNSSMYVLY-LINKNNN 65
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
RQ F+ GL + ++ + F L + +++ L
Sbjct: 66 INIRQYKFLYEGLPEFESQCKKC-NVSFHLLSYNNNIISNFINKYKIGHVIIEQMPLLFH 124
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ D + +V ++ VD+HN++PVWV S+K EY+A+T+R KINKL +YLI++P
Sbjct: 125 KKYYLDPLKKL---NVNVYIVDSHNIIPVWVTSDKQEYNARTIRIKINKLKDQYLIEFPK 181
Query: 194 LE----QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEI-GWCESGEDAAMEVLKGSKDGF 248
++ QPI + D II +K + EI G +G + + F
Sbjct: 182 VKISNIQPI----FVENNFD---IIPNYDKKLINIYEIVGGYTNGINRM--------NNF 226
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFL 305
++ Y +NNP S LSP+LH G ISAQRC LEA K +K+ E+ID+F+
Sbjct: 227 FKNKINTYKDKKNNP-NYENTSILSPWLHCGMISAQRCVLEANKLKKIKDYNIESIDSFI 285
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
EE+ +R+EL+DNFC+Y NY S WA +L+ H +DKR I++ + E +T + L
Sbjct: 286 EEIFIRKELSDNFCYYNNNYKSFASCPNWAILTLEIHKTDKRNKIFSLRELEYGKTDNKL 345
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
WN Q ++ G ++G+MRM+WAKK++EWT P++A+ IYLNDKY DG DP GYV
Sbjct: 346 WNYCQYYLLKFGYLNGYMRMFWAKKLIEWTNSPQDAIDKTIYLNDKYFFDGYDPMGYVNI 405
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
+WSI G+HD+ +KER ++GKIR+M+ +K +V+ +
Sbjct: 406 LWSIGGLHDRAFKEREMYGKIRFMSQPLMYKKLNVNDF 443
>gi|325187408|emb|CCA21946.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 532
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 184/525 (35%), Positives = 267/525 (50%), Gaps = 71/525 (13%)
Query: 8 STAVQPGRIRVLKQGS--LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
S +QP RI L G D ++YWM R N++L +A++ A ++P+ V +
Sbjct: 14 SGRIQPERISWLYDGGNCEDTSAKYLLYWMQTSVRTTHNYSLEYAIEAATALSLPLQVIY 73
Query: 66 NLFDQ--------------FLGAKARQLGFMLRGL-----RLLQRNIEETFQILFF---L 103
D+ F + R F L GL RL +R I+ F+I+ +
Sbjct: 74 FFSDRSSVPEEQLSRDPNAFAFSTERHAKFALEGLASTKMRLKERGID--FKIILYRKPT 131
Query: 104 FQGEAEDNIP-------NFVRECG--ASLLVTDFSPLR----EIRRCKDKICNRVSDSVT 150
+ E E+N + + +C A L+VTD +R + RC + R
Sbjct: 132 HESENEENEDQSDATRYHLLEKCARDALLVVTDKPYIRFSANDTMRCAEYALER-QKLWG 190
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE--------------- 195
+ +V+ VVP + S+K EYSA+T+R K+ + L ++L++ +
Sbjct: 191 LVQVEGDVVVPSAITSDKEEYSARTIRPKVTRQLTKFLVELKKQDISEKIKSSDSKLLCF 250
Query: 196 QPIEKWTGTRQSIDW--------DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
P+E +T + S D S + L V + GED E + ++D
Sbjct: 251 LPLELFTKEKNSADCVLEIDPTRKSEVLDALDLDRSVVSVDSIIGGED---EAERHTQD- 306
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA-RKLCPEAIDTFLE 306
F +L Y RN P S LS YLH+G IS AL + + + D FLE
Sbjct: 307 FAKNKLSKYAEARNEP-GADGSSNLSCYLHYGHISPVWIALLVKNIDNENSKNSRDAFLE 365
Query: 307 ELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
E+IVRREL+ NF Y PN YDS +G +A+K+L DH DKR HIY+ + E +T D
Sbjct: 366 EMIVRRELSVNFVVYNPNFYDSFEGIPNFAKKTLNDHRGDKRPHIYSLDDLESGRTDDNY 425
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
WNA+Q+E+V++G+MHG+MRMYW KKILEW+ PEEA +YLN+KY +D PN Y G
Sbjct: 426 WNAAQLEVVHSGQMHGYMRMYWGKKILEWSETPEEAFKRTVYLNNKYSLDAPHPNSYTGV 485
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
W+ G HDQGW+ER +FGK+R MN +G KRKFD+DGYI +K +
Sbjct: 486 AWTF-GKHDQGWREREIFGKVRCMNETGLKRKFDMDGYIQKIKTM 529
>gi|188586748|ref|YP_001918293.1| deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351435|gb|ACB85705.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 456
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 180/473 (38%), Positives = 260/473 (54%), Gaps = 39/473 (8%)
Query: 11 VQPGRIRVLKQGSLDKKRGP-VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
+ RI +L++ + G V+YWM + QR N AL +A++QANK N+P+ V F L++
Sbjct: 2 IHKERIEILQEVQTPAQEGKYVLYWMQKAQRTHYNHALEYAIEQANKLNLPLIVYFGLYE 61
Query: 70 QFLGAKARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
QF A +R FML+GL+ L +RNI+ + F + G E AS++
Sbjct: 62 QFPYASSRHFQFMLQGLQDVAENLAKRNIKMIIKRTFPPY-GAIE-------LAKDASMI 113
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
V D L+ + K+ + +++S IH+++ V+PV AS K EY+A TLR K+ K+L
Sbjct: 114 VVDKGYLKFEKDWKEILSHQLS--CPIHQIETDAVIPVNTASSKEEYAAYTLRKKLLKML 171
Query: 185 PEYLIDYPMLEQPIE----KWTGTRQSIDWD------SIIAAVLRKGAEVPEIGWCESGE 234
+L P++ + + T Q D D S I L EV + + GE
Sbjct: 172 DIFLT--PLISRNPNFNSFEITNLEQYNDIDIYTKSASEILEELDIHREVQPVTDIKGGE 229
Query: 235 DAAMEVLKGSKDGFLT--KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
+ A+E L GFL K L+ Y +N+P +A S LSPYLHFGQIS ALE K
Sbjct: 230 NQALEQL----SGFLNQGKGLELYIQKKNDP-SVQATSKLSPYLHFGQISPLFIALEVLK 284
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
+ FLE+LIVRREL+ N NY +L +W+ K+L +H +D R + YT
Sbjct: 285 ---FTQDYNHEFLEQLIVRRELSLNLIEKNINYLTLSPLPQWSIKTLNEHRNDPRNNFYT 341
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKY 412
E+ E A T D +NA+Q E++ G +H ++RMYW KKI+EW+ PEEA +LNDKY
Sbjct: 342 LEEIEAANTHDKYFNAAQKELMSRGTIHNYIRMYWGKKIIEWSQTPEEAHNTLCHLNDKY 401
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
+DGRDPNGY +W G HD+ ++ER +FGK+RYM + KR D Y+A
Sbjct: 402 ALDGRDPNGYANILWCF-GKHDRPFQERQIFGKVRYMGVNALKRNGKPDQYVA 453
>gi|339239563|ref|XP_003381336.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
gi|316975640|gb|EFV59048.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
Length = 515
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 254/474 (53%), Gaps = 30/474 (6%)
Query: 16 IRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-----FDQ 70
I +L + +++ V+YW+ RV+ N AL A +AN++ VPV F D
Sbjct: 23 IHLLNAKACNERGKYVLYWVQTSPRVKFNVALELACQKANEHQVPVLACFVFPTDKRLDN 82
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F R+ FML GLR ++ +++ I + G+ E I C +V D
Sbjct: 83 FPPETERRCVFMLDGLRDFEKRLKKERNIDLVVLYGKCEILIAKLAENCCE--VVVDAGY 140
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+R + D++ N + T +V+ + VVPV + SEK E++A T+R KI K +YL++
Sbjct: 141 MRYQNK-YDEVNNNIECRFT--KVETNVVVPVELVSEKEEFAAYTIRPKIWKYAKQYLVE 197
Query: 191 YPMLEQPIEK----WTGTRQSIDW---DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
P I K ++ ID D++I A L V ++ G A+++L
Sbjct: 198 -PECIMVIAKNKPLFSDNLPLIDLSQSDNVILAKLNADTTVKKVANIHGGHSEAVKLL-- 254
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT 303
D F++K+L NY RN P SGLSPY++FG IS L+ A K D
Sbjct: 255 --DNFVSKKLPNYDKLRNIP-GLDGQSGLSPYINFGHISTVEIILKVN-ASKANKSVKDA 310
Query: 304 FLEELIVRRELADNFCFYQP-NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
F+E+L+VRREL+ NF Y NYDSLK +WA +LK A KRE+IYT EQ EK +T
Sbjct: 311 FVEQLLVRRELSINFVHYNSENYDSLKCLPKWAADTLKLQAKAKREYIYTSEQLEKGETH 370
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALA--IAIYLNDKYEIDGRDPN 420
D WNA Q+E+VY GKM+G+MRMYW KK++EWT + A +NDKYE+DGRDPN
Sbjct: 371 DQYWNACQLELVYEGKMNGYMRMYWGKKVIEWTANHTRKVMNNCAFSMNDKYELDGRDPN 430
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF--DVDGYIAYVKRIVG 472
G+ G W + G HD+ R +FG +RYMN SG +RKF + Y+ + + G
Sbjct: 431 GFAGVAW-VFGKHDRAHSRRQIFGTLRYMNSSGLERKFKPHLKDYVKHCYELAG 483
>gi|188579437|ref|YP_001922882.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
gi|179342935|gb|ACB78347.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
Length = 476
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 178/471 (37%), Positives = 249/471 (52%), Gaps = 19/471 (4%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
PS +QP RI+ L V+YWM QR R N AL +AV++AN +PV V +
Sbjct: 16 PSRMIQPTRIKPLNDLPARDGASYVLYWMGLSQRARFNPALEYAVEEANGRGLPVLVCYG 75
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
L + A AR F+L G+ + + + Q E + + A+L++
Sbjct: 76 LAEGIPEANARHWAFLLEGMAEVGPELAKRGIAYVARRQPPVETAL---LYAADAALVIC 132
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D + L+ +RR R + +V+ VVPV AS K E +A+TLR KI +LLPE
Sbjct: 133 DRNYLKPVRRFYADFAARAP--CRVVQVEGEVVVPVETASPKHEVAARTLRPKIRRLLPE 190
Query: 187 YLIDYPMLEQPIEKWT---GTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAMEVL 241
YL+ P+ E+ + ++D + + A L+ V + + G A L
Sbjct: 191 YLV--PLEERSVAHRADHLSFESTLDLSDVPRLVASLKADQSVRPVRRFKGGTTQAEATL 248
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
+L R +Y R P + A S +SPYLH+GQIS AL+ + A +
Sbjct: 249 ----SHYLDARFNHYAQIRGRP-EAGAASHMSPYLHYGQISPVAIALKVQAAATGGEDDK 303
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+LEELIVRRELA N +Y+PNYDS + A WARK+L H D R ++YT EQFE+ +T
Sbjct: 304 AAYLEELIVRRELAMNHIYYEPNYDSYEAAPAWARKTLDAHRGDPRPYLYTPEQFERGET 363
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
D WNA+ MEM G MH MRMYW KKILEW+ PEEA A+ LN+KY IDGRD N
Sbjct: 364 HDRYWNAAMMEMRETGYMHNHMRMYWGKKILEWSASPEEAFETALRLNNKYFIDGRDANS 423
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
+ W + G+HD+ W RPV+G +R + + K KFD DGY+ V+R+
Sbjct: 424 FTNVTW-LFGLHDRPWGPRPVYGNVRSLGAATLK-KFDADGYVREVERLAA 472
>gi|332295845|ref|YP_004437768.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
14796]
gi|332178948|gb|AEE14637.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
14796]
Length = 443
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 171/460 (37%), Positives = 263/460 (57%), Gaps = 36/460 (7%)
Query: 17 RVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA 76
R+ K + +K ++YWM RV+ N + +A +NK+N+P+ V + +
Sbjct: 6 RIEKVQTFEKVGKYILYWMQGAFRVKYNHSFEYAKYLSNKHNIPLLVLIIVDFSYPEGNF 65
Query: 77 RQLGFMLRGLRLLQRNIEETF--QILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R F L GL+ + EET QI + G +D + +++ A +++TD S L +
Sbjct: 66 RSFKFFLEGLKDV---FEETISQQIGINIVVGSFQDVLKSYID--NAKIMITDKSYLPNL 120
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
K+ I + + +TI++VD + V+PV + S+K EY+A T+R KI KLL EY D+ +
Sbjct: 121 INIKNTIYS--ENKITIYQVDTNLVIPVNIVSQKKEYAAYTIRPKILKLLYEYRNDFEEI 178
Query: 195 EQPIEKWTGT----RQSIDWDSIIAAVLRKGAEV-----PEIGWCESGEDAAMEVLKGSK 245
K+ G+ + +D ++I LRK V P IG G A ++L
Sbjct: 179 -----KYNGSFLKPKTEVDLNNI-ENELRKQNLVNVLPAPYIG----GYKEAKKIL---- 224
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D F++K+ K Y +RNNP K + S +SPYLHFG IS L+ + E +F
Sbjct: 225 DYFVSKKFKYYKDNRNNPEK-ESESNISPYLHFGNISPLEI-LDTLEIFDKSSENYYSFF 282
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
EE+++RRELA NF +Y + ++L+ WA K+ +H DKRE++Y+ E+FE ++T D
Sbjct: 283 EEMVIRRELAHNFTYYSNDLNNLENLLPAWAFKTFYEHKDDKREYVYSLEEFENSKTHDE 342
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
+WNASQ E+ GK+H +MRMYW KKI+EW+ E+A IYLN+KY +DGRDPN YVG
Sbjct: 343 IWNASQRELKKRGKIHNYMRMYWGKKIIEWSKNIEDAYDAMIYLNNKYALDGRDPNSYVG 402
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+W G+HD+ +KER +FGK+R+M+ RKF ++ YI
Sbjct: 403 ILWCF-GLHDRAFKERKIFGKVRWMSQGSLIRKFGLNKYI 441
>gi|197105770|ref|YP_002131147.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
zucineum HLK1]
gi|196479190|gb|ACG78718.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
zucineum HLK1]
Length = 455
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 177/465 (38%), Positives = 256/465 (55%), Gaps = 22/465 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ R++VL V+YWM + QR N AL +AV+QAN +P+ V F L
Sbjct: 2 IPSSRLKVLVDAPPRPGARYVLYWMQQSQRAGGNPALEYAVEQANALKLPLLVCFGL-AA 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A AR FMLRGL ++R + I F + + + + + + +
Sbjct: 61 FPEANARHYDFMLRGLAEVERALAAR-GIGFVIRKRPPHELVRELAADAALVVADRGY-- 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R ++++ ++ + +V+ VVPV AS K EY+A+T+R K+++L +YL
Sbjct: 118 LRIQRAWRERLAEGLARRLV--QVEGDVVVPVEAASNKHEYAARTIRPKLHRLWDDYL-- 173
Query: 191 YPMLEQPI-EKWTGTRQSIDWD----SIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
+P+ E+P+ G R + D D + A L+ VP + +GE AA L
Sbjct: 174 HPLAERPVNHPALGLRVAGDVDLSKVDAVLAGLKIDRSVPPVRRFAAGEGAARAALAAFL 233
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D + L Y DR+ P + A+S LSPYLHFGQIS AL R+A + + T+L
Sbjct: 234 D----RGLARYEADRSRP-EAGAVSHLSPYLHFGQISPVEIALAVREAGVVS--GVATYL 286
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
EELIVRRELA N F P YD + EWAR++L DHASD R H+YT++QFE A+T D
Sbjct: 287 EELIVRRELAMNHAFQAPAYDRYEVLPEWARQTLADHASDPRPHLYTRDQFEAAETHDSY 346
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
WNA+ +EM G MH +RMYW KKIL W+ PEEA A+ LN+++ +DGRDPN +
Sbjct: 347 WNAAMLEMRATGYMHNRLRMYWGKKILHWSASPEEAWETALALNNRWFLDGRDPNSFTNV 406
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
W + G+HD+ W +PVFG +R M + K KFD + Y+ V+ +
Sbjct: 407 GW-LFGLHDRPWGPQPVFGTVRSMGPNTFK-KFDAEAYVRQVRAL 449
>gi|83816766|ref|YP_445872.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83758160|gb|ABC46273.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
Length = 462
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 167/468 (35%), Positives = 255/468 (54%), Gaps = 25/468 (5%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P RI+ L + + V+YWM + QR + N AL A+ A++ +P+ V + D F
Sbjct: 5 PDRIQPLNDKGVQEGARYVLYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFP 64
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R F+L GL+ ++ + + + + +G +D A++LVTD LR
Sbjct: 65 EATLRHHTFLLEGLQETKQRLADR-GLKLVVREGAPDDV--ALAHAGAAAVLVTDRGYLR 121
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
++ + ++ + +V+ VVPV ++K EY+A+T+R KI++ L L
Sbjct: 122 HQKQWRARVAEEAP--CRVEQVEGDVVVPVETVTDKAEYAARTIRPKIHEHLERCL---- 175
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK------- 245
L +P+ T S+D D L A V + + G A ++ G
Sbjct: 176 QLPEPVPVET---PSLDLDIDSGRSLDDIAAVTDQMDLDRGVGAVSDLYPGGVSEAEAIL 232
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA-IDTF 304
D FL + L Y +RN + A+S +S YLH+GQIS A + R+A PE+ I+++
Sbjct: 233 DDFLAEHLDGYDENRNQ-IHSHAVSHMSKYLHYGQISPVWLAQQVRRAE--GPESDIESY 289
Query: 305 LEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+EEL+VRREL N ++P+ YDS EWAR+SL +HA D+RE++Y+ ++ E T D
Sbjct: 290 IEELVVRRELTMNHVHFRPDTYDSYTCLPEWARESLAEHADDEREYVYSLDELEGGTTHD 349
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
P WNA+ EM G MH +MRMYW KKILEW+ P+ A + LN++Y +DGRDPN +
Sbjct: 350 PYWNAAMKEMRETGYMHNYMRMYWGKKILEWSPDPKTAYDRTLRLNNRYFLDGRDPNSFA 409
Query: 424 GCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W + G+HD+GWKERPV+GK+RYM+ G RK D D Y+ V R+
Sbjct: 410 NVAW-VFGLHDRGWKERPVYGKVRYMSQGGLDRKADPDAYVEKVDRLA 456
>gi|294507782|ref|YP_003571840.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294344110|emb|CBH24888.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 462
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 166/468 (35%), Positives = 254/468 (54%), Gaps = 25/468 (5%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P RI+ L + + V+YWM + QR + N AL A+ A++ +P+ V + D F
Sbjct: 5 PDRIQPLNDKGVQEGARYVLYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFP 64
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R F+L GL+ ++ + + + + +G +D A++LVTD LR
Sbjct: 65 EATLRHHTFLLEGLQETKQRLADR-GLKLVVREGAPDDV--ALAYAGAAAVLVTDRGYLR 121
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + ++ + +V+ VVPV ++K EY+A+T+R K+++ L L
Sbjct: 122 HQRQWRARVAEEAP--CRVEQVEGDVVVPVETVTDKAEYAARTIRPKMHEHLERCL---- 175
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK------- 245
L +P+ T S+D D L V + + G A ++ G
Sbjct: 176 QLPEPVPVET---PSLDLDIDSGRSLDDIEAVTDQMDLDRGVGAVSDLYPGGVSEAEAIL 232
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA-IDTF 304
D FL + L Y +RN + A+S +S YLH+GQIS A + R+A PE+ I+++
Sbjct: 233 DDFLAEHLDGYDENRNQ-IHSHAVSHMSKYLHYGQISPVWLAQQVRRAE--GPESDIESY 289
Query: 305 LEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+EEL+VRREL N ++P+ YDS EWAR+SL +HA D+RE++Y+ ++ E T D
Sbjct: 290 IEELVVRRELTMNHVHFRPDTYDSYTCLPEWARESLAEHADDEREYVYSLDELEGGTTHD 349
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
P WNA+ EM G MH +MRMYW KKILEW+ P+ A + LN++Y +DGRDPN +
Sbjct: 350 PYWNAAMKEMRETGYMHNYMRMYWGKKILEWSPDPKTAYDRTLRLNNRYFLDGRDPNSFA 409
Query: 424 GCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W + G+HD+GWKERPV+GK+RYM+ G RK D D Y+ V R+
Sbjct: 410 NVAW-VFGLHDRGWKERPVYGKVRYMSQGGLDRKADPDAYVEKVDRLA 456
>gi|339500100|ref|YP_004698135.1| DNA photolyase FAD-binding protein [Spirochaeta caldaria DSM 7334]
gi|338834449|gb|AEJ19627.1| DNA photolyase FAD-binding protein [Spirochaeta caldaria DSM 7334]
Length = 463
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 170/457 (37%), Positives = 241/457 (52%), Gaps = 33/457 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWM R R N AL +AV+ AN+ +P+ F + D +L A ++ GL Q
Sbjct: 20 ILYWMQASIRGRSNLALDYAVEAANRRGLPLITVFCIQDNYLSASQIHYKYLFAGLTEAQ 79
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+N+ E I +L++G+ +P + A+L+V D LR R + + +R+
Sbjct: 80 QNLTEK-GIALYLYKGDPIQILPLLAQH--AALVVLDTGYLRHQRIWRTNLGSRLPCRTI 136
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
V+++ ++PV AS K E+SA TLR KI LL ++L D E P S++
Sbjct: 137 W--VESNIIIPVETASIKEEWSAFTLRRKIIPLLDDFL-DRATDEIP------RYSSLNT 187
Query: 211 DSIIAAVLRKGAEVPEI-----GWC-ESGEDAAMEVLKGSK------DGFLTKRLKNYPT 258
D + +P + G C + + + + G + FLT R+ Y +
Sbjct: 188 DFLPHVPDHFSLNLPNLLKYPPGTCPKRMAEQTITDIPGHQIALQRFSDFLTARIDTYES 247
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-----CPE-AIDTFLEELIVRR 312
DRNNPL S +S LHFG IS AL ++ L C +LEELIVRR
Sbjct: 248 DRNNPLL-NGTSRMSGALHFGFISPLEMALTLQQELGLHRISACNHPGAAAYLEELIVRR 306
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
ELA NFC+Y YD+ G WA ++L + R IY E E AQT DP WNA+Q +
Sbjct: 307 ELAINFCYYNNAYDTPAGLPSWAIQTLTEGNLHPRRQIYNLESLEMAQTDDPYWNAAQNQ 366
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV G MHG+MRMYW K+++ WT E A+ AI LND+Y +DGRDPNGY G W G
Sbjct: 367 MVRTGYMHGYMRMYWGKQLIAWTGDYETAMKFAILLNDQYSLDGRDPNGYAGIAWCF-GK 425
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI-AYVK 468
HD+ W+ RP++G +RYMN +G +RKFD + Y AYV
Sbjct: 426 HDRPWQGRPIYGTVRYMNAAGLRRKFDANAYAQAYVS 462
>gi|325180775|emb|CCA15185.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 716
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 255/498 (51%), Gaps = 67/498 (13%)
Query: 9 TAVQPGRIRVLKQG----SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ Q RIR L G + +K ++YWM R + N++L +A+ A ++P+ V
Sbjct: 213 SGFQNERIRWLYDGISHARIQQKPSYLLYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVV 272
Query: 65 FNLFDQ--------------FLGAKARQLGFMLRGLRLLQRNIEE---TFQILFF----- 102
+ DQ F + R F L GL ++ + E +F++L+
Sbjct: 273 YFFSDQSTVPASQLPKDPNAFAFSTERHAKFALEGLACTEKRLRERGLSFKVLYHTPEKD 332
Query: 103 --LFQGEAEDNI-PNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDSVT---IHEV 154
L G++ + +C A L+VTD LR K S++ + ++
Sbjct: 333 PPLVDGDSSSFCRKQLLSKCAQHALLVVTDRPYLRPAALDTLKCATNASETQLPWGMVQI 392
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--------------IDYPMLEQPIEK 200
+ VVP S+K EY+A+T+R KI +LLP ++ +D + + P
Sbjct: 393 EGDVVVPCETTSKKEEYAARTIRPKITQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRY 452
Query: 201 WTGTRQSIDWDSIIA-----------AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ + D + I A+L+ VP + GED A + K FL
Sbjct: 453 FLVKSPASDTNEDILEFNLSQLKDILALLKVDRNVPGLSNFRGGEDEASLLTKV----FL 508
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEEL 308
K+L NY RN P S +S YLHFG IS R AL K + +A D FLEE+
Sbjct: 509 EKKLSNYALGRNEP-SNDGTSNISLYLHFGHISPVRIALATHKIKAASSKASRDAFLEEM 567
Query: 309 IVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
IVRREL+ N + P+ YDS++ +A+K+L+DHA+DKR +YT E+ E A+T D WN
Sbjct: 568 IVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDHANDKRPFLYTLEELEAAKTYDQFWN 627
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A+QMEM+++GKMHG+MRMYWAKKILEW+ P +A A+YLN+KY +D DPN Y G W
Sbjct: 628 AAQMEMLFSGKMHGYMRMYWAKKILEWSASPTQAYTHALYLNNKYCLDAPDPNSYTGIAW 687
Query: 428 SICGVHDQGWKERPVFGK 445
S G HDQGWKERP+FGK
Sbjct: 688 SF-GKHDQGWKERPIFGK 704
>gi|325180776|emb|CCA15186.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 737
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 255/498 (51%), Gaps = 67/498 (13%)
Query: 9 TAVQPGRIRVLKQG----SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ Q RIR L G + +K ++YWM R + N++L +A+ A ++P+ V
Sbjct: 234 SGFQNERIRWLYDGISHARIQQKPSYLLYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVV 293
Query: 65 FNLFDQ--------------FLGAKARQLGFMLRGLRLLQRNIEE---TFQILFF----- 102
+ DQ F + R F L GL ++ + E +F++L+
Sbjct: 294 YFFSDQSTVPASQLPKDPNAFAFSTERHAKFALEGLACTEKRLRERGLSFKVLYHTPEKD 353
Query: 103 --LFQGEAEDNI-PNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDSVT---IHEV 154
L G++ + +C A L+VTD LR K S++ + ++
Sbjct: 354 PPLVDGDSSSFCRKQLLSKCAQHALLVVTDRPYLRPAALDTLKCATNASETQLPWGMVQI 413
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--------------IDYPMLEQPIEK 200
+ VVP S+K EY+A+T+R KI +LLP ++ +D + + P
Sbjct: 414 EGDVVVPCETTSKKEEYAARTIRPKITQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRY 473
Query: 201 WTGTRQSIDWDSIIA-----------AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ + D + I A+L+ VP + GED A + K FL
Sbjct: 474 FLVKSPASDTNEDILEFNLSQLKDILALLKVDRNVPGLSNFRGGEDEASLLTKV----FL 529
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEEL 308
K+L NY RN P S +S YLHFG IS R AL K + +A D FLEE+
Sbjct: 530 EKKLSNYALGRNEP-SNDGTSNISLYLHFGHISPVRIALATHKIKAASSKASRDAFLEEM 588
Query: 309 IVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
IVRREL+ N + P+ YDS++ +A+K+L+DHA+DKR +YT E+ E A+T D WN
Sbjct: 589 IVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDHANDKRPFLYTLEELEAAKTYDQFWN 648
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A+QMEM+++GKMHG+MRMYWAKKILEW+ P +A A+YLN+KY +D DPN Y G W
Sbjct: 649 AAQMEMLFSGKMHGYMRMYWAKKILEWSASPTQAYTHALYLNNKYCLDAPDPNSYTGIAW 708
Query: 428 SICGVHDQGWKERPVFGK 445
S G HDQGWKERP+FGK
Sbjct: 709 SF-GKHDQGWKERPIFGK 725
>gi|116625724|ref|YP_827880.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
usitatus Ellin6076]
gi|116228886|gb|ABJ87595.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
usitatus Ellin6076]
Length = 456
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 165/460 (35%), Positives = 243/460 (52%), Gaps = 24/460 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R+L + + V+YW ++RV N AL+HA + AN+ ++P+ V L + A
Sbjct: 4 RVRLLNDRPVRQGGKYVLYWCRWNRRVEANHALLHAAETANRMDLPLVVYERLSCAYPTA 63
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC---GASLLVTDFSPL 131
R F+L G+ Q + + + ++FQ + + R+ A+++VTD L
Sbjct: 64 CDRFHTFVLEGVPHFQAQLRKLG--IPYIFQLPRRKTVRDERRDAVLRDAAVVVTD-DCL 120
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R R V + VD +VPV + Y+A ++R +I++LLP+YL
Sbjct: 121 RAAPRL----------DVRLEAVDGSCIVPVGAIPGR-SYAAYSIRPRIHRLLPKYLKAA 169
Query: 192 PMLE---QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
P LE + E++ + +I A L E+ + + F
Sbjct: 170 PALEIRRRSRERFEDLHTEVSAPNI--ASLVAECEIDHGVRASTTFPGGRMAAEAGLQRF 227
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
L +RL+ Y D+N P A S LSPYLH+G I A AL R+ D FLEEL
Sbjct: 228 LEERLRRYARDKNEP-SLHATSELSPYLHYGHIGALEVALAVREHAAAHKLIADEFLEEL 286
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
IVRRELA NF Y P DSL +WARK+++DH D R+ +Y + +FE A T D LWNA
Sbjct: 287 IVRRELAHNFARYAPRLDSLDVLPDWARKTIEDHRRDTRDPVYGRAEFEGAATHDDLWNA 346
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+Q E+V GK+HG+ RMYW K+I+EW+ EEA A ++L+D+Y +DG DPN Y +W
Sbjct: 347 TQKELVLRGKIHGYYRMYWGKRIIEWSPSAEEAHATMLWLHDRYALDGDDPNTYTNILWC 406
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
G+HD+ W ERP++G IR M SG +RK DV YI ++
Sbjct: 407 F-GLHDRPWPERPIYGTIRSMVRSGMERKTDVHAYIREIQ 445
>gi|325180778|emb|CCA15188.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 758
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 255/498 (51%), Gaps = 67/498 (13%)
Query: 9 TAVQPGRIRVLKQG----SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ Q RIR L G + +K ++YWM R + N++L +A+ A ++P+ V
Sbjct: 255 SGFQNERIRWLYDGISHARIQQKPSYLLYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVV 314
Query: 65 FNLFDQ--------------FLGAKARQLGFMLRGLRLLQRNIEE---TFQILFF----- 102
+ DQ F + R F L GL ++ + E +F++L+
Sbjct: 315 YFFSDQSTVPASQLPKDPNAFAFSTERHAKFALEGLACTEKRLRERGLSFKVLYHTPEKD 374
Query: 103 --LFQGEAEDNI-PNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDSVT---IHEV 154
L G++ + +C A L+VTD LR K S++ + ++
Sbjct: 375 PPLVDGDSSSFCRKQLLSKCAQHALLVVTDRPYLRPAALDTLKCATNASETQLPWGMVQI 434
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--------------IDYPMLEQPIEK 200
+ VVP S+K EY+A+T+R KI +LLP ++ +D + + P
Sbjct: 435 EGDVVVPCETTSKKEEYAARTIRPKITQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRY 494
Query: 201 WTGTRQSIDWDSIIA-----------AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ + D + I A+L+ VP + GED A + K FL
Sbjct: 495 FLVKSPASDTNEDILEFNLSQLKDILALLKVDRNVPGLSNFRGGEDEASLLTKV----FL 550
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEEL 308
K+L NY RN P S +S YLHFG IS R AL K + +A D FLEE+
Sbjct: 551 EKKLSNYALGRNEP-SNDGTSNISLYLHFGHISPVRIALATHKIKAASSKASRDAFLEEM 609
Query: 309 IVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
IVRREL+ N + P+ YDS++ +A+K+L+DHA+DKR +YT E+ E A+T D WN
Sbjct: 610 IVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDHANDKRPFLYTLEELEAAKTYDQFWN 669
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A+QMEM+++GKMHG+MRMYWAKKILEW+ P +A A+YLN+KY +D DPN Y G W
Sbjct: 670 AAQMEMLFSGKMHGYMRMYWAKKILEWSASPTQAYTHALYLNNKYCLDAPDPNSYTGIAW 729
Query: 428 SICGVHDQGWKERPVFGK 445
S G HDQGWKERP+FGK
Sbjct: 730 SF-GKHDQGWKERPIFGK 746
>gi|325180777|emb|CCA15187.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 779
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 255/498 (51%), Gaps = 67/498 (13%)
Query: 9 TAVQPGRIRVLKQG----SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ Q RIR L G + +K ++YWM R + N++L +A+ A ++P+ V
Sbjct: 276 SGFQNERIRWLYDGISHARIQQKPSYLLYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVV 335
Query: 65 FNLFDQ--------------FLGAKARQLGFMLRGLRLLQRNIEE---TFQILFF----- 102
+ DQ F + R F L GL ++ + E +F++L+
Sbjct: 336 YFFSDQSTVPASQLPKDPNAFAFSTERHAKFALEGLACTEKRLRERGLSFKVLYHTPEKD 395
Query: 103 --LFQGEAEDNI-PNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDSVT---IHEV 154
L G++ + +C A L+VTD LR K S++ + ++
Sbjct: 396 PPLVDGDSSSFCRKQLLSKCAQHALLVVTDRPYLRPAALDTLKCATNASETQLPWGMVQI 455
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--------------IDYPMLEQPIEK 200
+ VVP S+K EY+A+T+R KI +LLP ++ +D + + P
Sbjct: 456 EGDVVVPCETTSKKEEYAARTIRPKITQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRY 515
Query: 201 WTGTRQSIDWDSIIA-----------AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ + D + I A+L+ VP + GED A + K FL
Sbjct: 516 FLVKSPASDTNEDILEFNLSQLKDILALLKVDRNVPGLSNFRGGEDEASLLTKV----FL 571
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEEL 308
K+L NY RN P S +S YLHFG IS R AL K + +A D FLEE+
Sbjct: 572 EKKLSNYALGRNEP-SNDGTSNISLYLHFGHISPVRIALATHKIKAASSKASRDAFLEEM 630
Query: 309 IVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
IVRREL+ N + P+ YDS++ +A+K+L+DHA+DKR +YT E+ E A+T D WN
Sbjct: 631 IVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDHANDKRPFLYTLEELEAAKTYDQFWN 690
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
A+QMEM+++GKMHG+MRMYWAKKILEW+ P +A A+YLN+KY +D DPN Y G W
Sbjct: 691 AAQMEMLFSGKMHGYMRMYWAKKILEWSASPTQAYTHALYLNNKYCLDAPDPNSYTGIAW 750
Query: 428 SICGVHDQGWKERPVFGK 445
S G HDQGWKERP+FGK
Sbjct: 751 SF-GKHDQGWKERPIFGK 767
>gi|68304204|ref|YP_249672.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973033|gb|AAY83999.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 512
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/438 (35%), Positives = 233/438 (53%), Gaps = 29/438 (6%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGL 86
K+G VVYWM+RD RV+DNWA+I+A A K P+ + + L +L + RQ F++ GL
Sbjct: 55 KKGGVVYWMWRDCRVQDNWAMIYAQYLAFKTKSPLYIVYCLPKFYLNSTRRQYQFLIEGL 114
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
L E I F + A+ + ++VR+ +V DF+PL+ + I +
Sbjct: 115 IELSEECAE-LDITFVILDDSADVVLIDWVRKHDICAVVCDFNPLQLQIKSTVNILQNLP 173
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP-----IEKW 201
V +VDAHNVVP W+ + + KI+ L L + ++ Q +
Sbjct: 174 ADVYFAQVDAHNVVPCWLTFIADRHDYDEFKSKIDAELENLLTPFSLVIQHPYKSVVSIE 233
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+ T SIDW +++++ V I W E+G +AA+ L F+ + NY +
Sbjct: 234 SSTNTSIDWSNLLSS-RNVDHSVKRIKWTEAGYNAAILRLAT----FIQCYIYNYKNSIH 288
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKA-------------RKLCPEAIDTFLEEL 308
NP+ + S LSP+ HFG ISAQR R RKL I+ F+E
Sbjct: 289 NPVSSKQ-SDLSPFFHFGFISAQRVIYHLRFCVTKKSVLQKTVFIRKL-KNNIEKFIENC 346
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
+ RRE ADNFC++ NY + A ++ + H R + Y+ + E +QT D +WN
Sbjct: 347 LYRREFADNFCYFNLNYITFNAASPQIKRYIAKHL---RYYTYSLNELEYSQTHDNIWNK 403
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+Q ++ NGK++ F+R+YWAKKILEWT+ PEEAL AIYLN KY +DG DP+GYVGC+++
Sbjct: 404 AQEDLRENGKIYPFIRVYWAKKILEWTSTPEEALNRAIYLNQKYAVDGCDPSGYVGCLYA 463
Query: 429 ICGVHDQGWKERPVFGKI 446
+ G+ + G VFG+I
Sbjct: 464 MSGLLNAGQSNVFVFGEI 481
>gi|74229751|ref|YP_308955.1| photolyase [Trichoplusia ni SNPV]
gi|72259665|gb|AAZ67436.1| photolyase [Trichoplusia ni SNPV]
Length = 502
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 158/453 (34%), Positives = 240/453 (52%), Gaps = 33/453 (7%)
Query: 17 RVLKQGSLDK------KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
R+LK +++ +G VVYWM+RD RV+DNWALI+A A K P+ + + L
Sbjct: 29 RILKLSQVNEPDQSVANKGGVVYWMWRDCRVQDNWALIYAQYLAFKTKSPLYIVYCLPKT 88
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+L A RQ F++ GL L E I F + A+ + ++V + ++TD++P
Sbjct: 89 YLNATRRQYQFLIEGLIGLSEECVE-LDITFVILDDRADVVLIDWVLKHDICAVITDYNP 147
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ + + + +VDAHNVVP W S+ ++ + KIN+ L YL
Sbjct: 148 LQLQMNVVVTVLQNLPAEIYFAQVDAHNVVPGWTLSDTGKFDYDQFKVKINEQLENYLTR 207
Query: 191 YPML-----EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
+ ++ + + + T +IDW+ ++++ V I W E+G DAA+ L
Sbjct: 208 FSLVIRHPYKSVVAIESSTNTAIDWNQLLSS-RSIDHSVKRINWTEAGYDAAILRLAS-- 264
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC------------ALEARKA 293
F+ L NY + L S LSP+LHFG ISAQR L+ +
Sbjct: 265 --FIQCSLYNYKNCIQD-LTSTNQSDLSPFLHFGFISAQRVIYHLRFCITKQSVLQKTIS 321
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
+ + I+ F+E + RRE ADNFC+Y NY+S ++ +K H R Y
Sbjct: 322 KVKLEKNINRFIENCLYRREFADNFCYYNSNYNSFIAPSTQSKLYIKRHI---RFFTYGL 378
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYE 413
++ E +QT D LWN +Q ++ NGK+H F+R+YWAKKILEWT PEEAL AIYLN +Y
Sbjct: 379 KELENSQTHDALWNRAQEDLRENGKIHPFIRVYWAKKILEWTPTPEEALNRAIYLNQRYA 438
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
+DG DP+GYVGC++++ G+ + G VFG+I
Sbjct: 439 VDGCDPSGYVGCLYAMNGLLNAGQSNVFVFGEI 471
>gi|116750550|ref|YP_847237.1| DNA photolyase, FAD-binding [Syntrophobacter fumaroxidans MPOB]
gi|116699614|gb|ABK18802.1| Deoxyribodipyrimidine photo-lyase type II [Syntrophobacter
fumaroxidans MPOB]
Length = 468
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 236/461 (51%), Gaps = 28/461 (6%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM + QR N AL +A +AN P+ V F L + A R FML GL
Sbjct: 25 VLYWMQQSQRSEFNHALEYAAHRANSLRQPLVVVFGLTGDYPEANLRHYTFMLEGLEETG 84
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+++ I + D AS LV D +R + + +
Sbjct: 85 ASLQAR-GIKLVVMHASPPDAALAAA--SEASFLVCDRGYMRH--QALWRAAVAAAAPCP 139
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+ +V+A +VPV AS K EY+A+TLR +++ +L + P E + S+D
Sbjct: 140 VVQVEADAIVPVETASSKAEYAARTLRPRVHTHARSFLTE----PAPAEL---RKSSLDA 192
Query: 211 D------SIIAAVLRK---GAEVPEIG-WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
D + A VLRK VP + + G A E+ + FL + Y DR
Sbjct: 193 DLNGMDVTDTARVLRKLRADRSVPSVTRYYRGGTSRAKELF----ETFLRDDIGRYTEDR 248
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N P A+S +S YLHFGQIS AL + + FLE+L+VRRELA NF
Sbjct: 249 NQP-HAGAVSHMSMYLHFGQISPVYLALRLGEVGRERDTQKAAFLEQLLVRRELALNFVH 307
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ NYDS + WAR++L H D+RE Y +++ E +T D WNA+ EM + G MH
Sbjct: 308 HTRNYDSYECLPRWARETLARHRKDRREFRYGRQELENLRTHDEYWNAAMTEMKFTGYMH 367
Query: 381 GFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
MRMYW KKILEW+ PEEA + LN+KY +DGRDPN Y G W + G+HD+ WKER
Sbjct: 368 NHMRMYWGKKILEWSETPEEAFQTILALNNKYFLDGRDPNSYAGAGW-VLGLHDRPWKER 426
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADS 481
P+FG +RYM SG +RK D+ GY+ +KR+ G + RA +
Sbjct: 427 PIFGTVRYMAASGLERKCDIKGYVEEMKRLRAGATQPRATA 467
>gi|313672005|ref|YP_004050116.1| deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
DSM 19672]
gi|312938761|gb|ADR17953.1| Deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
DSM 19672]
Length = 444
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 258/461 (55%), Gaps = 25/461 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +K+ S KK ++YWM RV N +L A A ++P+ V + + A
Sbjct: 6 RVRQIKKSS--KKGDYILYWMQGAFRVEYNHSLEFAKYLALSKDLPLKVLVVVDFNYKDA 63
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R F + G+ L ++ +I F + G ++ +P + + A L+TD + ++ +
Sbjct: 64 NYRHFKFFIDGILELIDKFKD-LKISFHVKIGSFKEIVPQYSK--NADTLITDKAYIKWL 120
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ +++I N+ + +TI+EVD + +VPV AS K EY A T+R KI+KL ++L D+ +
Sbjct: 121 KDVRNEIYNK--NDITIYEVDTNLMVPVQAASPKCEYGAYTIRPKIHKLKEKFLNDFVVF 178
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCE--SGEDAAMEVLKGSKDGFLTKR 252
+ + G ++ D + K V + + GE A ++L+ FL ++
Sbjct: 179 D-----YKGRSYEVENDLNGLNIDDKLKSVHYLKPVDFIGGESKADKLLRD----FLNEK 229
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
+ R +P S LS YLHFG IS + EA K P+ +T E+L+VRR
Sbjct: 230 YLFFAEKRGDP-SLDVESNLSFYLHFGFISPIKILKEAIKI-DTDPKNYETLFEQLVVRR 287
Query: 313 ELADNFCFYQPNYDSLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
ELA NF +Y N L WA K++ +H D R+++Y E E +T D WNA+Q
Sbjct: 288 ELAHNFTYYCDNISDLFSFLPNWAVKTVIEHKDDIRKYLYKLEDLENFKTHDKFWNAAQY 347
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
E+++ GK+H +MRMYW KK++EWT E+A I IYLNDKY +DGRDPNGY G W G
Sbjct: 348 ELIHKGKIHNYMRMYWGKKVIEWTESFEDAYKILIYLNDKYALDGRDPNGYAGIAWCF-G 406
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
+HD+ ++ER +FGK+RYM+ +G K+KFD+DGY++ R++G
Sbjct: 407 MHDRAFQERKIFGKVRYMSENGLKQKFDMDGYLS---RVMG 444
>gi|324506249|gb|ADY42672.1| Deoxyribodipyrimidine photo-lyase [Ascaris suum]
Length = 549
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 250/439 (56%), Gaps = 19/439 (4%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+G V ++ R R + + A A ++ANK+ VP+ +A +L+ Q F+L GL+
Sbjct: 16 KGSYVLYILRCLRTKYSAAFSFASERANKSQVPL-IALHLYVP-EHHNVPQRVFLLEGLK 73
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVS 146
L+ ++ L + + +D + ++ C GA +V D + LR R ++++ + +
Sbjct: 74 ELKESMGSLQVKLLCVKANDNKDALKIALQLCEGACEVVLDAAYLRGDREFEEQLNHMLI 133
Query: 147 DSV-TIHEVDAHNVVPVWVASEKLEYSAKTLRGKI----NKLLPEYLIDYPMLEQPIEKW 201
+ + ++ + VP+ ++S+ E+ A+TLR KI +L E D PM+ P W
Sbjct: 134 ERCRKLTRIEGNVSVPINLSSKSAEWGARTLRPKIWQHLKAMLAEKWEDVPMI--PCGNW 191
Query: 202 TG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
+ +I ++ + R ++ GE A +L F++ +L +Y R
Sbjct: 192 AKLIKGNIPEMNLEEELKRAQSDCKSDSGFVGGETVAQRML----SFFISNKLVSYHPGR 247
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N P + S LSPYLHFG ISA + A K AID+F+EEL+VRR+L+ NF +
Sbjct: 248 NIP-GSKYQSLLSPYLHFGMISAIEIIKRVKDA-KAPKHAIDSFIEELLVRRDLSHNFVY 305
Query: 321 Y-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
Y + NYDSL +WA+K+LK H +DKR++IYT E+ E A+T DP WNA+Q+EMV+ KM
Sbjct: 306 YAKDNYDSLDCLPDWAQKTLKQHKNDKRDYIYTSEELEDARTHDPYWNAAQLEMVHTNKM 365
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
HG+MRMYW KK++EWT E A I NDK+E+DGRDPNGY G MW + G+HD+ E
Sbjct: 366 HGYMRMYWGKKVIEWTPDYETAYRFLIEQNDKHELDGRDPNGYTGVMW-VFGMHDRAHAE 424
Query: 440 RPVFGKIRYMNYSGCKRKF 458
R VFGK+RYMN G RK+
Sbjct: 425 RAVFGKLRYMNAEGLYRKY 443
>gi|170744406|ref|YP_001773061.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
gi|168198680|gb|ACA20627.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
Length = 465
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 180/470 (38%), Positives = 249/470 (52%), Gaps = 26/470 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD- 69
++ RIR L Q + R V+Y M + R RDN AL HA+D+AN+ +PV V F L D
Sbjct: 7 IEAARIRALNQAPPRQGRY-VLYLMQQAMRSRDNPALEHAIDEANRLGLPVVVGFGLLDG 65
Query: 70 --QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
F A AR F+L+GL + +E I F L + + A+L V D
Sbjct: 66 GRTFPEANARHYAFLLQGLAAARAGVERR-GIAFVLRR--STPAAAALALGAEAALAVLD 122
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
L R +I ++ + +V+ VVPV AS+K E++A+TLR K+ +L Y
Sbjct: 123 RGYLTVQRAWSAEIARGLA--CPVVQVEGDVVVPVETASDKHEFAARTLRPKLQRLWDSY 180
Query: 188 LIDYPMLEQPIEKWT-GTRQSIDWD-----SIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
L P+ + + G + D D + +AA+ A P + GED AM L
Sbjct: 181 LA--PLRARRVAHAADGLALASDLDVSDPEAALAALTLDRAVRP-VRRFRGGEDEAMARL 237
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
D +L Y T RN P + A S +SPYLHFGQIS AL+ R A PE
Sbjct: 238 ----DAYLAGPFAQYGTVRNRP-EAGAASHMSPYLHFGQISPVAIALKVRAAAAGGPEDK 292
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQ 360
++LEELIVRRELA N YQP YD + A +WAR++L +HA D+R+ +Y + E+ +
Sbjct: 293 ASYLEELIVRRELAMNHVHYQPGYDRYESAVPDWARRALAEHAGDRRDPLYDEAALEEGR 352
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
T D WNA+ EM G MH +RMYW KKILEW+ PEE + LN++Y +DGRDPN
Sbjct: 353 THDRHWNAAMREMRETGYMHNHLRMYWGKKILEWSPSPEEGFRRTLRLNNRYFLDGRDPN 412
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
+ W I G+HD+ W RP+FG +RY+ RKFD GY+ V+ +
Sbjct: 413 SFTNVAW-IYGLHDRPWGRRPIFGTVRYLG-PNTLRKFDAAGYLRSVEAL 460
>gi|325947635|gb|ADZ46042.1| CPD photolyase, partial [Dunaliella tertiolecta]
Length = 236
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/238 (55%), Positives = 165/238 (69%), Gaps = 12/238 (5%)
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW---------TGT 204
VDAHNVVPVWVAS+K E A+T+R K++K LPE+L +YP L Q W G
Sbjct: 1 VDAHNVVPVWVASDKRETGARTIRPKVHKNLPEFLREYPALPQAPTAWPSSLSRQPDNGP 60
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT-KRLKNYPTDRNNP 263
S+DWD++IA L++G+ VPE+ W + GE A+ L+G +GFLT RL Y RN+P
Sbjct: 61 SSSLDWDALIAEALQRGSSVPEVHWVKPGETASKLALEGP-EGFLTPSRLAQYSAKRNDP 119
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
+ALS LSPYLHFGQ+ AQR AL A K R EA+D FLEEL+VRRELADNFC Y P
Sbjct: 120 -SAKALSNLSPYLHFGQLLAQRIALSASKHRAKYKEAVDGFLEELVVRRELADNFCEYTP 178
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
NYDSL A EWA++SL H +DKRE +Y+++Q E+ +T D WNASQMEMV+ GKMHG
Sbjct: 179 NYDSLDCAAEWAKESLNVHRTDKREKLYSRDQLEQGRTHDEPWNASQMEMVHLGKMHG 236
>gi|393911740|gb|EJD76434.1| photolyase [Loa loa]
Length = 496
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 163/461 (35%), Positives = 244/461 (52%), Gaps = 35/461 (7%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
G V + R R + + + A +AN++ VPV V + Q Q F+L GL
Sbjct: 21 GKYVLLLIRCIRSQQSPSFSFASGKANEHGVPVLVTY--IYQPDRHNLAQRKFLLEGLNC 78
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL-LVTDFSPLREIRRCKDKICNR-VS 146
L+ N+ L + ++ ++ A+ ++TD + LRE RR + + ++ +
Sbjct: 79 LENNLSRLHAPLLVIKANNNQEATKIVLKLSDAACEVITDAAYLREDRRLDENLNDKLIM 138
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
+V+ + +PV V K Y+A T+R L ++L+ EKW T +
Sbjct: 139 KCRRFTKVEGNVTIPVTVLCSKPAYNANTIRKVAWHFLDDFLL---------EKWNVTPK 189
Query: 207 --SIDWDSIIAAVL----------RKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
W SI+ L R A+ + GEDAA++V+ D F+ LK
Sbjct: 190 IHCKSWKSIVEYNLECTDISSEYTRAVADCKIGSVLKGGEDAALQVM----DYFIANNLK 245
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
Y +RN P + S LSPY+HFG ++ E +++ K A D FLEE++VRREL
Sbjct: 246 AYDKERNIP-NGKKQSLLSPYMHFGMLNPITIVNEVKQS-KAPKSAKDAFLEEMVVRREL 303
Query: 315 ADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
A NF +Y + YD+ EWA+K++++H DKRE+IY ++ E+ +T D WNA+Q E+
Sbjct: 304 AHNFVYYYRDTYDTFDCLPEWAKKTMEEHRFDKREYIYNYKELEEGRTHDVYWNAAQFEL 363
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
V+ KM G++RMYWAKK++EW+ E A A I NDKYE+DGRDPNGY G MW+ G+H
Sbjct: 364 VFTHKMSGYLRMYWAKKVIEWSPDYERAYAFLIEQNDKYELDGRDPNGYCGVMWNF-GIH 422
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKF--DVDGYIAYVKRIVG 472
D+ RPVFGKIRYM G +RKF +D Y++ R G
Sbjct: 423 DRAHANRPVFGKIRYMCADGLRRKFRNHIDDYVSINYRRAG 463
>gi|391332116|ref|XP_003740484.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Metaseiulus
occidentalis]
Length = 447
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/425 (36%), Positives = 235/425 (55%), Gaps = 32/425 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF--LGAKARQLGFMLRGLRL 88
++Y M RD+R+ DN H V+ K + F +F L RQ F++ GL+
Sbjct: 20 ILYLMRRDKRIFDN----HCVELGFKLSYKSKTKFYTGVEFSKLKINERQKTFVIEGLQE 75
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD- 147
++ E I F L DN+ FV + ++ DFSPLRE ++++ SD
Sbjct: 76 MEEACRE-HNIYFDLI-----DNLEKFVEKRDIDCIIMDFSPLRECEAYRNEVEEMCSDK 129
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI--EKWTGTR 205
++++ VDAHN+VP + + + ++K ++ ++ +YL D+ LE+ + +K +
Sbjct: 130 ELSLYVVDAHNMVPCKLL-DVYKRTSKAVKIQLFNHWDDYLSDFKPLEKHLYNKKSETST 188
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
QS D+ + KG G M+ + + F K+ Y +RNNP
Sbjct: 189 QSNDFPKKSVKNIFKG-----------GYSHGMDTV----EHFFDKKFAIYAKNRNNP-D 232
Query: 266 PRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
ALS LSP++ GQIS+Q+ A K E +F+ E+ +E +++FC ++ NY
Sbjct: 233 VDALSNLSPWISSGQISSQKVIYLATKRFGKKNENYISFINEIFAVKENSEHFCLHEKNY 292
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D++ GA +WA+ SL H +DKRE IY E E +T D WNA+Q +++ GK+HG+ RM
Sbjct: 293 DNIDGALQWAKDSLNLHRNDKRERIYDLETLEMGKTKDQAWNAAQRQLLAEGKLHGYCRM 352
Query: 386 YWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGK 445
YWAK++L+WT PEEA+ A YLND + IDG PNG++G MWSICG DQG+KERPV GK
Sbjct: 353 YWAKQLLKWTKTPEEAIKTACYLNDTFAIDGNCPNGFLGPMWSICGSMDQGFKERPVTGK 412
Query: 446 IRYMN 450
IR MN
Sbjct: 413 IRPMN 417
>gi|386855815|ref|YP_006259992.1| Deoxyribodipyrimidine photo-lyase type II [Deinococcus gobiensis
I-0]
gi|379999344|gb|AFD24534.1| Deoxyribodipyrimidine photo-lyase type II [Deinococcus gobiensis
I-0]
Length = 328
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 205/347 (59%), Gaps = 28/347 (8%)
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+R R+ +D + + V++ V++ VVPV VAS K EY+A+T+R KI++L +YL+
Sbjct: 1 MRVQRQWRDDLAAALK--VSLVAVESEAVVPVRVASPKQEYAARTIRPKIHRLWQDYLV- 57
Query: 191 YPMLEQPIEKWTGTRQSIDWD--------SIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P++ ++ DWD + +AA L V G GE AA+ L
Sbjct: 58 ------PLDTHDLAHRADDWDPGEAVDDPAALAARLPIDQSV-GAGHETGGEAAALARL- 109
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
+ F+ L +Y RN+P + S LS YLH+G +S AL A D
Sbjct: 110 ---EEFIAHDLAHYHERRNDPTIDGS-SRLSAYLHYGHLSPLTVALAALDHPG---PGTD 162
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
LEEL+VRREL+ NFC+Y P+YD +G +WARK+L++H D R YT EQ ++ +T
Sbjct: 163 ALLEELVVRRELSFNFCWYNPDYDRYEGVPDWARKTLEEHEDDPRPAHYTPEQLDRGETE 222
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DP WNA+Q +MV G+MH +MRMYW KK+LEW+ GP EA A + LN++YE DGRD N +
Sbjct: 223 DPYWNAAQRQMVQTGRMHNYMRMYWGKKLLEWSAGPREAHATMLALNNRYEQDGRDANSF 282
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI-AYVK 468
VG W + G+HD+ W PVFG +R M+ SG +RKFD++ Y+ A+VK
Sbjct: 283 VGVSW-VLGLHDRPWARHPVFGTVRSMSASGLRRKFDMEAYVKAWVK 328
>gi|393769050|ref|ZP_10357579.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. GXF4]
gi|392725510|gb|EIZ82846.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. GXF4]
Length = 462
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 241/478 (50%), Gaps = 39/478 (8%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+Q RIRVL V+Y + + R R N AL A+++AN+ ++PV F L D
Sbjct: 2 AIQGERIRVLNDVEPRADGRYVLYLLQQANRARFNPALEFAIEEANRLDLPVIACFGLLD 61
Query: 70 QFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
G A AR F+L+GL + +E+ + + F+ + A I + E A+LLV
Sbjct: 62 GASGFPEANARHYAFLLQGLADAKAGLEK--RGVGFVMRKCAPAKIAIDLAE-EAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L + +I V + +V+ VVPV AS K E++A+TLR K+N+L
Sbjct: 119 DRGYLAIQKGWYREIAKAVKTRIV--QVEGDVVVPVETASNKHEFAARTLRPKLNRLWDP 176
Query: 187 YLIDY-------------PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
++ D P E + + D ++ V R G
Sbjct: 177 FIADLKPRKPKHAATDVTPEGEIDVSDPEAVLAGMSLDRVVGPVKR----------FTGG 226
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E A + LK FL Y RN P + A S +SP+LHFGQIS AL R+A
Sbjct: 227 ETEARKRLKA----FLADGFAGYGAGRNMP-EAAAASHMSPFLHFGQISPVEIALAVREA 281
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYT 352
+ + +LEELIVRRELA N FY YD K +WARK+L + A D R +Y+
Sbjct: 282 KVGDDDDRGAYLEELIVRRELAMNHVFYTEGYDDYDKAVPDWARKTLAEQAEDARPTLYS 341
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKY 412
+ Q +T D WNA+ EM G MH +RMYW KKILEW+ PEE A + LN++Y
Sbjct: 342 EAQLAAGETHDHYWNAAMREMRETGYMHNQLRMYWGKKILEWSPSPEEGFARTLRLNNRY 401
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
+DGRDPN + W + G+HD+ W+ RP+FG +RY + + K KFD GY+ V+R+
Sbjct: 402 FLDGRDPNSFTNVAW-VYGLHDRPWQRRPIFGTVRYQSENSLK-KFDAKGYVKAVERL 457
>gi|162448261|ref|YP_001621393.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
gi|161986368|gb|ABX82017.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
Length = 458
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 160/469 (34%), Positives = 253/469 (53%), Gaps = 21/469 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ R++ + + +K+ ++YWM + R++ N AL +A++ ANK +P+ V FN+
Sbjct: 2 IHNDRVKKFLEHNTNKQGKFILYWMQQSMRIQYNHALNYAIELANKKKLPLIVWFNILPN 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A R FML GL+ LQ++ + I F L G+ +NI ++ + ++ D
Sbjct: 62 YPEANLRHYTFMLEGLKELQQDFVKE-NIHFELSIGKLTENIKPYLDDVDT--IIMDRGY 118
Query: 131 LREIRRCKDKICNRVSDS--VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
L+ R+ ++++ V D+ + I +V+ ++PV V K Y A +R K+ + LP+Y+
Sbjct: 119 LKPQRQMRNEVYKIVKDTHAIDIIQVETDLIIPVEVLYPKAAYGAYVIRPKVMEKLPQYM 178
Query: 189 IDYPMLEQ--PIEKWTGTRQSIDWDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVLKGS 244
DY L + IEK T + +D +I V L V + G A + L
Sbjct: 179 -DYRELSRLDNIEK-TKVYEPLDLSNIDEVVKNLPIDMSVKPYHKFKGGRKEAYKHL--- 233
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEAID 302
+ F + LK+Y D+ + S +S YL FGQ+S Q L K+ PE +
Sbjct: 234 -EYFFNQLLKDY--DKRSDPALHIQSYMSMYLQFGQVSDQEILRMLYDHPFYKIYPEMSE 290
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWE-WARKSLKDHASDKREHIYTKEQFEKAQT 361
F+E+L+VRR LA NF Y +YD + E WA +++ +H D R HIY+ E E ++T
Sbjct: 291 GFIEQLVVRRSLAYNFVTYIKDYDVFEFMTESWAYETMYEHERDLRTHIYSLEDIEFSKT 350
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
D +NA+ E G M ++RMYWAKKI+EW+ ++A I +YLN+KY IDGR+PN
Sbjct: 351 HDIHFNAAMKEARITGFMANYLRMYWAKKIMEWSGSMKDAYQIIVYLNNKYFIDGRNPNS 410
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
Y W+ G HD+ W+ER +FGK+RYMN G RKFD+ Y+ YV +
Sbjct: 411 YGNIAWNF-GKHDRAWQERAIFGKLRYMNEQGLIRKFDMKTYLDYVNTL 458
>gi|149175245|ref|ZP_01853867.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
gi|148845854|gb|EDL60195.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
Length = 497
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 164/490 (33%), Positives = 252/490 (51%), Gaps = 53/490 (10%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L Q SL K V+YWM ++R R N++L AV+ + + N P+ V L + A
Sbjct: 7 RIRPLNQASLQKNGDYVLYWMIANRRTRYNYSLQRAVELSKELNKPLLVFEALRCGYEWA 66
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLR 132
R F+L+G+ + R+ + + ++ + + + A +VTD P
Sbjct: 67 SDRLHRFVLQGM-VDNRDSLQDSPVGYYCYVEPKAGHGSGLLSALATKACAVVTDDFPCF 125
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL---- 188
I + + R+S V + +D++ ++P+ AS+ + +A R ++K LP++L
Sbjct: 126 FIPQMLKSVAPRLS--VRLEAIDSNGLLPLRAASQ-IYPTAYAFRRFLHKALPDHLDQTP 182
Query: 189 -------IDYP----MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP---EIGWCESGE 234
ID P + + +E+W D ++ A A++P ++G +
Sbjct: 183 KINPLSHIDLPEFSSLPAKILERWPMAS-----DQLLQATPEVLADLPLDHQVG--PADF 235
Query: 235 DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC-------- 286
D M+ + FL R + Y +RN P + SGLSPYLHFG IS
Sbjct: 236 DGGMKAASKTLKQFLNVRFERYAEERNLP-EEEVTSGLSPYLHFGHISVHEVFKRVADRE 294
Query: 287 -----------ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWA 335
A R E + FL+ELI REL N C+ + +YD + +WA
Sbjct: 295 DWNAAKVIDQKATGKRAGWWQMSETAEGFLDELITWRELGYNMCWQRDDYDQYESLPDWA 354
Query: 336 RKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWT 395
R +L++HA+DKR+ YT E+FE+A+T D LWNA+Q ++V G+MH +MRM W KKIL W+
Sbjct: 355 RTTLEEHAADKRDPCYTLEEFEQARTHDELWNAAQTQLVTEGRMHNYMRMLWGKKILHWS 414
Query: 396 TGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGC 454
P+ AL I ++LN+KY +DGR+PN Y G W + G +D+ W ERP+FGKIRYM
Sbjct: 415 KSPQAALEIMMHLNNKYAVDGRNPNSYSGIFWCL-GRYDRAWGPERPIFGKIRYMTCENT 473
Query: 455 KRKFDVDGYI 464
RKF VDGY+
Sbjct: 474 ARKFSVDGYL 483
>gi|391335982|ref|XP_003742363.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Metaseiulus
occidentalis]
Length = 453
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 153/433 (35%), Positives = 237/433 (54%), Gaps = 40/433 (9%)
Query: 28 RGPVVYWMFRDQRVRDNWA--LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
+ V+Y M RD+RV DN L + + A+K + + F + L +RQ F+L G
Sbjct: 14 KSNVLYLMRRDKRVYDNHCVELGYKLSYASKGRFYIGIEF----EKLKLNSRQKTFVLEG 69
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---C 142
L EE + L F + + FV++ ++ DFSPLRE + ++ C
Sbjct: 70 LE----EDEEACRRLNIYFSLIVD--LDRFVKQKNIDCIILDFSPLRECLAYRGEVEAYC 123
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT 202
+ +++ DA+N+VP + + + ++K +R ++ + P++L DY +LE+ + +
Sbjct: 124 --IEKRISLRVCDANNLVPCKILA-VYKKTSKAVRSELFEHFPKFLRDYKVLEKHLYNKS 180
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCES----GEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + +E PE+ ++ G M++L + FL KR Y
Sbjct: 181 ------------SETYMQKSEFPEVPVVQNVFKGGYSQGMKML----EEFLQKRFPTYHK 224
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCA-LEARKARKLCPEAIDTFLEELIVRRELADN 317
R NP LS LSP++ GQIS Q+ + A++ ++ + FL E+ RE A++
Sbjct: 225 HRKNP-DADNLSNLSPWISNGQISTQKILFIIAQRFKEKKSDNYHAFLREVFAFRETAEH 283
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
FC ++ NYDSL+GA WA+ +L H D RE IY E+ EK QT WNA+Q E++ G
Sbjct: 284 FCLHERNYDSLEGALPWAKDTLTKHKDDDREQIYDLEKLEKGQTHILAWNAAQRELLATG 343
Query: 378 KMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
K+HG+ RMYWAK+I++WT PEEA+ A+YLND Y IDG NGY+G MWSICG D+G+
Sbjct: 344 KIHGYCRMYWAKQIMKWTKSPEEAVERAVYLNDTYAIDGNCSNGYMGIMWSICGSMDRGF 403
Query: 438 KERPVFGKIRYMN 450
+ERPV G+IR MN
Sbjct: 404 QERPVIGRIRPMN 416
>gi|429962002|gb|ELA41546.1| deoxyribodipyrimidine photolyase [Vittaforma corneae ATCC 50505]
Length = 456
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/439 (33%), Positives = 234/439 (53%), Gaps = 22/439 (5%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
++ V+Y M RDQR+ +N ++ + + KN + + L L +Q F+L G
Sbjct: 32 QEHSNVLYIMSRDQRIHENHSVALSYSLSYKNKSKLLIGIELSK--LQMNEKQKTFILEG 89
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-EIRRCKD--KIC 142
L L + ++ ++ + +I F+ +V DF+P+R I+R + KIC
Sbjct: 90 LVELNKEAKKYNLHVYNI------TDIEPFIISNSIGTVVLDFNPMRVYIKRQNEISKIC 143
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT 202
+ ++ + D+HN+VP + + ++K +R + K +YL +Y +E
Sbjct: 144 EKHKTALFV--CDSHNIVPCKTL-KVYKRTSKAVRTDLYKEWRKYLKEYEKIEPHKFNKP 200
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
T + D ++LRK + + G M+ L + F +R +Y RN+
Sbjct: 201 ETESGNNTDEF-ESLLRKNPRDKQCTFT-GGYSEGMKQL----ELFFCERFSSYSKGRND 254
Query: 263 PLKPRALSGLSPYLHFGQISA-QRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
P + LS LSPY+H G ISA Q L + K + F+ E+ + RE A++F ++
Sbjct: 255 P-ETNVLSDLSPYIHAGHISALQTIFLTIERYGKDESDNYQAFINEMFIWRETAEHFVYH 313
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
+ NYD++ GA WA+ +L H D+R IY + Q E A+T DPLWNA+Q +M +GKMHG
Sbjct: 314 EKNYDNINGALAWAKNTLLYHVRDQRPAIYDRNQLESARTDDPLWNAAQRQMTVSGKMHG 373
Query: 382 FMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERP 441
++RMYWAKKILEWT P A+ I I +ND+Y IDG DPNGY+G MWS+CG D+ + E+P
Sbjct: 374 YVRMYWAKKILEWTEDPRNAIRIGIEMNDQYSIDGNDPNGYLGVMWSVCGSMDRAFAEKP 433
Query: 442 VFGKIRYMNYSGCKRKFDV 460
++GKIR M C D
Sbjct: 434 IYGKIRSMKSFKCPLYIDT 452
>gi|297727355|ref|NP_001176041.1| Os10g0167600 [Oryza sativa Japonica Group]
gi|255679238|dbj|BAH94769.1| Os10g0167600 [Oryza sativa Japonica Group]
Length = 154
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 107/131 (81%), Positives = 121/131 (92%)
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
I +EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 10 IREREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 69
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 70 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 129
Query: 470 IVGGTKKRRAD 480
+ G +KKR A+
Sbjct: 130 LAGQSKKRNAE 140
>gi|170750160|ref|YP_001756420.1| deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
JCM 2831]
gi|170656682|gb|ACB25737.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
JCM 2831]
Length = 462
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 251/473 (53%), Gaps = 29/473 (6%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+Q R+R+L V+Y + + R N AL A+++AN+ ++PV F L D
Sbjct: 2 AIQGERVRILNDVEPGGDGAYVLYLLQQANRATFNPALELAIEEANRLDLPVVACFGLLD 61
Query: 70 QFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
G A AR F+L+GL + +E+ + + F+ + + I + E A+LLV
Sbjct: 62 GASGFPEANARHYAFLLQGLADAKAGLEK--RGVGFVMRKCSPAEIAIALAE-DAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L + +I V + +V+ VVPV AS K EY+A+TLR K+N+L
Sbjct: 119 DRGYLAIQKGWYREIAAAVKTRIV--QVEGDVVVPVETASPKHEYAARTLRPKLNRLWDP 176
Query: 187 YLIDYPMLEQPIEKWTGTRQSI-------DWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L P+ + + K + R ++ D ++++A + EV + GE A +
Sbjct: 177 FLA--PLKPRRV-KHSADRLTLKSAIDVSDPEAVLAG-MTLDREVGPVRRFTGGETQARK 232
Query: 240 VLKGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
LK KDGF Y RN P + A S +SPYLHFGQIS AL R+A+
Sbjct: 233 RLKAFLKDGF-----SGYGAGRNMP-EAAAASHMSPYLHFGQISPVEIALAVREAKVGDS 286
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYTKEQFE 357
+ +LEELIVRRELA N +Y YD + +WARK+L +HA D+R H Y++ Q
Sbjct: 287 DDRGAYLEELIVRRELAMNHVYYTEGYDDYDRAVPDWARKTLAEHARDERPHAYSEAQLA 346
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGR 417
+T D WNA+ EM G MH +RMYW KKILEW+ P E A + LN++Y +DGR
Sbjct: 347 AGETHDRYWNAAMREMRETGYMHNQLRMYWGKKILEWSPSPREGFARTLRLNNRYFLDGR 406
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
DPN + W + G+HD+ W++R +FG +RY + + K KFD Y+ V+R+
Sbjct: 407 DPNSFTNVAW-VYGLHDRPWQKRKIFGTVRYQSENSLK-KFDAKAYVRAVERL 457
>gi|303276170|ref|XP_003057379.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461731|gb|EEH59024.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 431
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 163/442 (36%), Positives = 231/442 (52%), Gaps = 28/442 (6%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG--AKARQLGFMLRGLRL 88
V+ W+ QR N AL A +AN + VPV F F G + AR L FM GL
Sbjct: 4 VLLWVQSAQRASHNEALELACARANVHGVPVVAVFGGTAGFPGGGSGARHLRFMYEGLCE 63
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
L+ + T + F GE D + R A +VTD R +RR ++K+ V +
Sbjct: 64 LEDALARTRGVRLLGFAGEVPDVVIAASRR--AVEVVTDAGYTRTLRRWREKVAGGVQCA 121
Query: 149 VTIHEVDAHNVVPVWV---ASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR 205
T EV+ V P++ + + E +A TLR KI L +G
Sbjct: 122 TT--EVECDVVAPLYAPGGGAGRGEPAAATLRPKIWPRLEALASREATTTTLALAASGAE 179
Query: 206 QSIDWDSIIAAVLRKGAEVPEI------GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
++++ AA+ A P + G+ GE A L + FL++RL +Y +
Sbjct: 180 EALELVGGAAAM----AAFPRLPVPPCPGYHAGGEAEAHRKL----EVFLSRRLDDYASK 231
Query: 260 RNNPLKPRALSGLSPYLHFGQISA---QRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
RN+P S LSP++H+GQIS R ALE ++ ++D FL+EL++RRELA
Sbjct: 232 RNDP-GLGLQSHLSPHIHYGQISVVYVTRRALEVKRRDPRHARSVDVFLDELVIRRELAI 290
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
NF P YDS G WAR +L DHA D R YT+E+FE+ T D LWNA+Q E++ +
Sbjct: 291 NFVLNNPKYDSYDGLPRWARITLADHAGDARRWSYTREEFERGLTHDALWNAAQRELLTS 350
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
GK H ++RMYWAKKILEW+ P EA +AI LN+KY +DGRDP+ Y G W G+HD+
Sbjct: 351 GKQHNYVRMYWAKKILEWSEDPAEAWRVAIELNNKYSLDGRDPSSYTGVGWCF-GLHDKP 409
Query: 437 WKERPVFGKIRYMNYSGCKRKF 458
+ E + G +R M+ +G + KF
Sbjct: 410 FPETQIVGTLRRMSENGMRGKF 431
>gi|240139079|ref|YP_002963554.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens AM1]
gi|418058150|ref|ZP_12696129.1| DNA photolyase FAD-binding [Methylobacterium extorquens DSM 13060]
gi|240009051|gb|ACS40277.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens AM1]
gi|373568265|gb|EHP94215.1| DNA photolyase FAD-binding [Methylobacterium extorquens DSM 13060]
Length = 467
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 173/470 (36%), Positives = 241/470 (51%), Gaps = 19/470 (4%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + G V+Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDVKPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A AR F+L+GL +E+ I F L + + + A+LLV
Sbjct: 62 GANGFPEANARHYSFLLQGLADAAAALEKR-GIAFLLRRATPAEIAIDL--SADAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L +R +I I +V+ VVP+ AS K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKRWYGEIEREAQ--CRIVQVEGDVVVPLETASTKHEYAARTLRPKLRKLWDD 176
Query: 187 YL--IDYPMLEQPIE---KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
YL ++ ++ P E K + +D S +L K A +G + E
Sbjct: 177 YLEPVEPRQVDHPAEGLIKRLKLKDGLD-ASDPEKLLAKLALNTTVGPVKRFRGGYTEA- 234
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
G FL Y RN P + A S +SPYLHFG IS AL R A+ +
Sbjct: 235 AGHLKRFLEHAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDR 293
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+LEELIVRRELA N F+ YD + +WARK+L +HA D R +Y++E+ + +
Sbjct: 294 SAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEELAEGK 353
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
T D WN + EM G MH +RMYW KKILEW+ PEEA A + LN++Y +DGRD N
Sbjct: 354 THDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDAN 413
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
+ W I G+HD+ W+ R +FG +RY + + RKFD GY V R+
Sbjct: 414 SFTNVAW-IFGLHDRPWQTRQIFGSVRYQSENSL-RKFDAKGYERAVTRL 461
>gi|254561673|ref|YP_003068768.1| deoxyribodipyrimidine photolyase [Methylobacterium extorquens DM4]
gi|254268951|emb|CAX24912.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens DM4]
Length = 467
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 242/474 (51%), Gaps = 27/474 (5%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + G V+Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDAKPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLELPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A AR F+L+GL +E+ I F L + + + A+LLV
Sbjct: 62 GANGFPEANARHYAFLLQGLADAAAALEKR-GIAFLLRRATPAEVAIDL--SADAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L +R I I +V+ VVP+ S K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKRWYGAIEREAQ--CRIVQVEGDVVVPLETVSTKHEYAARTLRPKLRKLWDD 176
Query: 187 YL-------IDYPM--LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
YL +D+P L Q ++ G S D + ++A + P + +AA
Sbjct: 177 YLEPVEPRGVDHPAKGLIQRLKLKDGLDVS-DPEKLLAKLTLDTTVGPVKRFRGGHTEAA 235
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
G + FL Y RN P + A S +SPYLHFG IS AL R A+
Sbjct: 236 -----GHLERFLEHAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVEIALAIRAAKDAD 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYTKEQF 356
+ +LEELIVRRELA N F+ YD + +WARK+L +HA D R +Y++E+
Sbjct: 290 DDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEEL 349
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG 416
+T D WN + EM G MH +RMYW KKILEW+ PEEA A + LN++Y +DG
Sbjct: 350 AAGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDG 409
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
RD N + W I G+HD+ W+ R +FG +RY + + RKFD +GY V R+
Sbjct: 410 RDANSFTNVAW-IFGLHDRPWQTRQIFGSVRYQSENSL-RKFDANGYERAVIRL 461
>gi|218530705|ref|YP_002421521.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens CM4]
gi|218523008|gb|ACK83593.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens CM4]
Length = 467
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 244/478 (51%), Gaps = 35/478 (7%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + G ++Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDVKPREGAGYILYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A AR F+L+GL +E+ I F L + + + A+LLV
Sbjct: 62 GANGFPEANARHYAFLLQGLADAAAALEKR-GIAFLLRRATPAEVAIDL--SADAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L +R +I I +V+ VVP+ S K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKRWYGEIEREAQ--CRIVQVEGDVVVPLETVSTKHEYAARTLRPKLRKLWDD 176
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAV-LRKGAEV--PEIGWCESGEDAAMEVLKG 243
YL +P+E T + + +I + L+ G +V PE + D + +K
Sbjct: 177 YL-------EPVEPLTVDHPA---EGLIQRLKLKDGLDVSDPEKLLAKLTLDTTVGPVKR 226
Query: 244 SKDG----------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
+ G FL Y RN P + A S +SPYLHFG IS AL R A
Sbjct: 227 FRGGYTEAAGHLKRFLEHAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVEIALAIRAA 285
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYT 352
+ + +LEELIVRRELA N F+ YD + +WARK+L +HA D R +Y+
Sbjct: 286 KDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYS 345
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKY 412
+E+ + +T D WN + EM G MH +RMYW KKILEW+ PEEA A + LN++Y
Sbjct: 346 EEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRY 405
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
+DGRD N + W I G+HD+ W+ R +FG +RY + + RKFD GY V R+
Sbjct: 406 FLDGRDANSFTNVAW-IFGLHDRPWQTRQIFGSVRYQSENSL-RKFDAKGYERAVTRL 461
>gi|300708917|ref|XP_002996629.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
gi|239605945|gb|EEQ82958.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
Length = 473
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 241/459 (52%), Gaps = 44/459 (9%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ VL + +G V+Y RD R+ +N + +A + + + + + D +
Sbjct: 4 RLTVLANSPI---KGNVLYISMRDLRLLNNHCIHYAYNLSYHYQSQMFIGVPIKD--IKC 58
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
Q +L + L++ E Q L+ DN+ FV+ ++ D+SPLRE
Sbjct: 59 NDVQYSLILENIEDLRK--ESIKQNLYLTIL----DNVNTFVKTNKIKNIILDWSPLRE- 111
Query: 135 RRCKDKICNRVSDSVTIH-----EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
CN + D T ++D+HN+VP + + + ++ +++ ++ K EYL
Sbjct: 112 ---HIAFCNNIKDLCTKDKLFCIQIDSHNIVPCKIL-DVYKRTSSSVKIQLFKHFFEYLN 167
Query: 190 DYP--MLEQPIEKWTGTRQSID-----WDSIIAAVLRKGAEVPEIG----------WCES 232
+Y LE+ + T +++ WD++ +V + +
Sbjct: 168 EYDDLQLEKSVNDSNFTSKNMKFIINAWDTLEPHKFNDKKKVSSFKCNIPKYEPAKYYQG 227
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC-ALEAR 291
A ++V+ D F + Y RNNP LS LSPY+H G +S Q+ L
Sbjct: 228 TYSAGLKVM----DDFFNNKFHIYNECRNNP-DVDGLSNLSPYIHLGILSPQKIIKLAYE 282
Query: 292 KARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIY 351
K K + +D ++ E+ + RE +++FC++ +YD++ GA EWAR SL +HA D+REH+Y
Sbjct: 283 KFYKKDKDNLDGYVAEIFIWRETSEHFCYHNKDYDNIMGALEWARDSLHEHAKDEREHLY 342
Query: 352 TKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDK 411
TKE+ E +T D WNA++ +++ K+HG++RMYWAK++++WT PEEA+ I I LNDK
Sbjct: 343 TKEELEFGKTNDSFWNAAENQLLKLNKIHGYVRMYWAKQLVKWTKTPEEAVKIGIELNDK 402
Query: 412 YEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMN 450
Y IDG DPNGY G MW ICG D+G+K+R + GKIR +N
Sbjct: 403 YSIDGNDPNGYTGVMWCICGTMDRGYKDRDITGKIRPLN 441
>gi|163851953|ref|YP_001639996.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
gi|163663558|gb|ABY30925.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
Length = 467
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 174/478 (36%), Positives = 242/478 (50%), Gaps = 35/478 (7%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + G V+Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDVKPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A AR F+L+GL +E+ I F L + + + A+LLV
Sbjct: 62 GANGFPEANARHYAFLLQGLADAAAALEKR-GIAFLLRRATPAEVAIDL--SADAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L +R +I I +V+ VVP+ S K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKRWYGEIEREAQ--CRIVQVEGDVVVPLETTSTKHEYAARTLRPKLRKLWDD 176
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAV-LRKGAEV--PEIGWCESGEDAAMEVLKG 243
YL P+E T + + +I + LR G +V PE D + +K
Sbjct: 177 YL-------DPVEPRTVDHPA---EGLIQRLKLRDGLDVSDPEKLLATLTLDTTVGPVKR 226
Query: 244 SKDG----------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
+ G FL Y RN P + A S +SPYLHFG IS AL R A
Sbjct: 227 FRGGYTEAAGHLKRFLEHAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVEIALAIRAA 285
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYT 352
+ + +LEELIVRRELA N F+ YD + +WARK+L +HA D R +Y+
Sbjct: 286 KDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYS 345
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKY 412
+E+ + +T D WN + EM G MH +RMYW KKILEW+ PEEA A + LN++Y
Sbjct: 346 EEELAEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRY 405
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
+DGRD N + W I G+HD+ W+ R +FG +RY + + RKFD GY V R+
Sbjct: 406 FLDGRDANSFTNVAW-IFGLHDRPWQTRQIFGSVRYQSENSL-RKFDAKGYERAVTRL 461
>gi|308804061|ref|XP_003079343.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
gi|116057798|emb|CAL54001.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
Length = 529
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 171/481 (35%), Positives = 246/481 (51%), Gaps = 47/481 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+ W+ R N AL AVD+AN + VPV F + A R +GFM GL L+
Sbjct: 49 VLLWVQASHRSTANEALETAVDRANVSGVPVIALFCSTANYPEANERHIGFMFEGLCELR 108
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+E +I F+ + I V A +V D + LR +RR ++++ R + +VT
Sbjct: 109 EALERR-KIAFYAVACSPPEAI--IVASERAVEIVVDGAYLRLLRRWREELATRATCTVT 165
Query: 151 IHEVDAHNVVP-VWVASEKLEYSAKTLRGKINKLLPEYL----IDYPMLEQPIEKWTGTR 205
EV+ VVP + + + E +A T R K+ L+ +Y P + ++ TR
Sbjct: 166 --EVETDCVVPQLSMKHARAEVAAATFRPKVLPLIGKYTRVACAVLPYIYGALDD--ATR 221
Query: 206 QSIDW--------------DSIIAAV----LRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
+S + D+ + + L + + P + G+ A + D
Sbjct: 222 KSFESTIVEFDVLPLHRGVDACLGVLDTHGLVRDPKCPRVSSHVGGQSQA----RAKLDA 277
Query: 248 FLTKR-LKNYPTDRNNPLKPRALSGLSPYLHFGQISA---QRCALEARKARK----LCPE 299
FLTK+ L Y RN+P S LSP++H+GQIS R LE R A K +C
Sbjct: 278 FLTKKMLSRYHKSRNDPTLC-LQSHLSPHIHYGQISVVEIARKTLEFRDAHKEDADVCA- 335
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+ID FL+ELIVRRELA NF PNYD+ G WA+++L+ HA D+RE YT E+FE
Sbjct: 336 SIDVFLDELIVRRELAINFALRNPNYDTYDGLPTWAKETLEKHADDRREWTYTLEEFECG 395
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
T D LWNASQ ++V GK H ++RMYW KKILEW+ PEE IA+ LN++Y +DGR+
Sbjct: 396 STHDKLWNASQRQLVSTGKQHNYLRMYWGKKILEWSASPEEGWRIAMALNNRYSLDGRNF 455
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF--DVDGYIAYVKRIVGGTKKR 477
G W G+HD+ + E + G IR + SG +KF + GY+ GG+ KR
Sbjct: 456 VSLTGVGWCF-GLHDREFHEASITGTIRRFSESGMMKKFPAGIKGYLERWGDDEGGSSKR 514
Query: 478 R 478
R
Sbjct: 515 R 515
>gi|226228098|ref|YP_002762204.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
gi|226091289|dbj|BAH39734.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
Length = 495
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 226/461 (49%), Gaps = 37/461 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R+ DNW L A+ A++ +PV V L + A AR F+L+G R
Sbjct: 37 VLYWMQSTHRLDDNWGLRAAIRTADRLKLPVVVHQGLDPTYPHASARHHTFILQGARDTA 96
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECG-ASLLVTDFSPLREIRRCKDKICNRVSDSV 149
R E F+ + + D+ R A ++ TD P +R + RV+ V
Sbjct: 97 RQAEALGIHYQFVLRPQRTDDARVVDRLAARAYVVFTDLFPTAGVRERVARFAQRVTCRV 156
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID 209
VD+ VP + EK EY+A+T+R K+ +LL + +P+E T R +
Sbjct: 157 L--AVDSVCTVPSGL-FEKAEYAARTIRPKLARLLAHAI-------EPVEDHT-PRSDVS 205
Query: 210 WD---SIIAAVLRKGAEVP-------------EIGWCESGEDAAMEVLKGSKDG------ 247
S+ A V G VP + C D + G
Sbjct: 206 TSLATSLRATVAEGGGLVPLDIAQMDDAAIARTVAGCAIDHDVCAVPMPGGSSAANARWT 265
Query: 248 -FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
FL L Y RN S LSPYLHFGQIS+ R EA++A + +D F++
Sbjct: 266 RFLEHGLPQYDERRNEASDGEGTSRLSPYLHFGQISSARVVREAQQA-GVGAANLDAFVQ 324
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
++ REL+ N+C P +D L W ++++++H +D R +YT++Q E+AQT D LW
Sbjct: 325 QITTWRELSYNWCVRTPAFDQLSALPAWVQRTMQEHVNDPRPELYTRDQLERAQTGDRLW 384
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
NA+Q E+V G +H + RM W K +L WT E+A +LNDKY +DGRD N G M
Sbjct: 385 NAAQTELVQEGIIHNYPRMLWGKTVLLWTRDYEDARTWLFHLNDKYALDGRDANSVGGIM 444
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
W + G+ D+ W RPV+G +R M + K KFDV+GYIA V
Sbjct: 445 WCL-GLWDRPWGNRPVWGGLRPMATARAKTKFDVEGYIARV 484
>gi|188581711|ref|YP_001925156.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
gi|179345209|gb|ACB80621.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
Length = 467
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 239/477 (50%), Gaps = 27/477 (5%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + V+Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDEPPREDADIVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A R F+L+GL ++ I F + +G + + A+LLV
Sbjct: 62 GANGFPEANERHYAFLLQGLADAAAALDRR-GIAFLVRRGTPAQVAIDLSEK--AALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L + I + +V+ VVPV AS K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKNWYGAIEREAK--CRVVQVEGDVVVPVETASAKHEYAARTLRPKLQKLWDD 176
Query: 187 YL-------IDYPMLEQPIE--KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
YL +D+P E IE K D D+++A L+ V + G A
Sbjct: 177 YLEPLEPRAVDHPA-EGLIERLKLKDGLDVSDPDTLLAK-LKLDTTVGPVKRFRGGHTEA 234
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
E L D FL Y RN P + A S +SPYLHFG IS AL R A
Sbjct: 235 AERL----DSFLKDAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVETALAIRAAEGAD 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYTKEQF 356
+ +LEELIVRRELA N F+ YD + EWARK+L +HA D R +Y++E+
Sbjct: 290 RDDRSAYLEELIVRRELAMNHVFHTEGYDDYARAVPEWARKTLAEHADDARPKLYSEEEL 349
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG 416
+ +T D WN + EM G MH +RMYW KKILEW+ PEEA A + LN++Y +DG
Sbjct: 350 AEGKTHDHYWNVAMREMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDG 409
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGG 473
RD N + W I G+HD+ W+ RP+FG +RY + + RKFD Y V R+
Sbjct: 410 RDANSFTNVAW-IFGLHDRPWQTRPIFGSVRYQSENSL-RKFDAKAYEQAVTRLCAA 464
>gi|145346558|ref|XP_001417753.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577981|gb|ABO96046.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 467
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 172/474 (36%), Positives = 245/474 (51%), Gaps = 35/474 (7%)
Query: 3 SLTPPSTAVQPGRIRVLKQGSLDKKRGP----VVYWMFRDQRVRDNWALIHAVDQANKNN 58
S T + +V R+R L + P V+ W QR R N AL +AVD+AN
Sbjct: 11 SATLRARSVHEARVRRLNDAR--AREAPDGAYVLLWAQSAQRTRWNEALEYAVDRANDRR 68
Query: 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ-GEAEDNIPNFVR 117
P+ V F + A R +GFML GL ++ + + +I F F E + R
Sbjct: 69 APLVVVFCSTATYPEANERHVGFMLEGLCEMRATLGKR-RIAFEAFACAPPEAALAASER 127
Query: 118 ECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVP-VWVASEKLEYSAKTL 176
A +VTD LR +R +D + R + +VT E++ VVP + + + E SA T
Sbjct: 128 ---AIEVVTDSGYLRLLRAWRDDLARRATCAVT--EIETECVVPQLGQGARRAEPSAATF 182
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAV----LRKGAEVPEIGWCES 232
R K+ + E+ + + ++K+ D+ + + L++ P +
Sbjct: 183 RPKVLARVREFTRN--ACAKTVDKYERLPLERGVDACLNVLDAYGLKRDPSCPRVSSHVG 240
Query: 233 GEDAAMEVLKGSKDGFLTKR-LKNYPTDRNNPLKPRALSGLSPYLHFGQISA---QRCAL 288
GE A K D FLTK L Y RN+P S LSP++H+GQIS R AL
Sbjct: 241 GESRA----KAKLDVFLTKNMLSRYHHSRNDPCLC-LQSHLSPHIHYGQISVVEVARKAL 295
Query: 289 EARKARK----LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHAS 344
R A +C ++D FL+ELIVRRELA NF P YDS G EWAR++L+ H
Sbjct: 296 AFRDAHADEADICA-SVDVFLDELIVRRELAVNFALRNPKYDSYDGLPEWARETLERHRG 354
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAI 404
D+RE YT E+FE +T D LWNASQ E+V +GK H ++RMYW KKILEW++ PEEA I
Sbjct: 355 DRREWTYTLEEFEHGRTHDKLWNASQRELVSSGKQHNYLRMYWGKKILEWSSTPEEAWRI 414
Query: 405 AIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF 458
A+ LN++Y +DGR+ G W G+HD+ + E + G IR + SG ++KF
Sbjct: 415 AMTLNNRYSLDGRNMVSLTGVGWCF-GLHDREFHEASITGTIRRFSESGMRKKF 467
>gi|293652309|gb|ADE60793.1| CPD photolyase [Chrysodeixis chalcites]
Length = 237
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/232 (52%), Positives = 155/232 (66%), Gaps = 6/232 (2%)
Query: 160 VPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLR 219
VP WVASEK EYSA+T+R KIN L EYL ++P + + + IDWD I +
Sbjct: 5 VPCWVASEKQEYSARTIRNKINSKLDEYLTEFPPVIKHPYTAKFDPEPIDWDEAIVS-RE 63
Query: 220 KGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFG 279
V + W G D A+++LK FL RLK + T RN+P K ALS LSP+ HFG
Sbjct: 64 ADKNVGPVAWARPGYDEAVKMLKS----FLENRLKVFATKRNDPTKD-ALSNLSPWFHFG 118
Query: 280 QISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 339
QIS QR AL ++ + E+++ FLEE IVRRELADNFCFY +YDS+KGA +WA+K+L
Sbjct: 119 QISVQRVALCVQEHKSKYTESVNAFLEEAIVRRELADNFCFYCEHYDSIKGASQWAQKTL 178
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI 391
DH DKR HIYT EQ K++T D LWN++Q+++V GKMHGF+RMYWAKKI
Sbjct: 179 DDHRKDKRTHIYTLEQLAKSETHDDLWNSAQIQLVKEGKMHGFLRMYWAKKI 230
>gi|428171171|gb|EKX40090.1| hypothetical protein GUITHDRAFT_164772 [Guillardia theta CCMP2712]
Length = 779
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 166/500 (33%), Positives = 243/500 (48%), Gaps = 68/500 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM QR R+N AL HA+ +N P+ V F LF+++ A R FM+ GLR +
Sbjct: 214 VLYWMSAAQRTRENHALQHAISISNHMQKPLWVIFCLFEKYPEANERHFTFMVEGLREVS 273
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
N++ I F + +G D P + + + V D R +R + ++ + S +
Sbjct: 274 LNLQRQ-GIKFTVVKGRPPD--PILLLQDKSCCTVLDCGYTRTVRGWRKELLAKSSTKIV 330
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID-------YPMLEQPIEKWTG 203
+ V+ VVP VAS+ E +A T R K++K + +YL+ +P ++ E
Sbjct: 331 L--VEGEVVVPTDVASKVQEPAAATFRPKVSKWIDKYLVSAGEQRVLFPSVDMDFESNFD 388
Query: 204 TR-------QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL-KGSKDGFLTKRLKN 255
S+ D I++ ++ P + + GE A E+L K G K +
Sbjct: 389 KHDDLELMDMSLPLDEIMSKLVVDRTVPPCSCFLQGGETRAEELLSKFLTSGADGKAINE 448
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA---IDTFLEELIVRR 312
Y RN+P R S LSPYL FGQIS R A++AR+ PE +D FLEELIVRR
Sbjct: 449 YQLKRNDP-SLRKQSHLSPYLQFGQISPVRIAMKAREFASKFPEHRQDVDVFLEELIVRR 507
Query: 313 ELADNFCFYQPNYDS-----------------------LKG----------AWEWARKSL 339
E A NF + P+YDS L G + A
Sbjct: 508 EFAVNFVLHNPSYDSSVAPPLVPHLTTLTLPRSDLCPCLTGREVASGPGLSSSSSADSCP 567
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPE 399
+DHA +KR H YT+EQ E+ +T D WNA+Q EM+ GKMH +MRMYWAK+++ W E
Sbjct: 568 RDHAHEKRTHTYTEEQLEQGRTHDQYWNAAQFEMIITGKMHNYMRMYWAKQVILWMDKWE 627
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG-WKERPVFGKIRYMNYSGCKRKF 458
+A + N+K+E+DGR G QG + ERPV G +R M G ++KF
Sbjct: 628 DAYRFLVAQNNKWELDGRG-KGRTPL---------QGPFPERPVLGPVRCMTAGGLEKKF 677
Query: 459 DVDGYIAYVKRIVGGTKKRR 478
DV GY+ ++ + G + R
Sbjct: 678 DVSGYLKRIEHLRKGIDEGR 697
>gi|87311465|ref|ZP_01093585.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
gi|87285877|gb|EAQ77791.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
Length = 494
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 251/484 (51%), Gaps = 41/484 (8%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ + + +R V+YWM ++R R N++L AVD A + P+ V L + A
Sbjct: 8 RLANCNEAPVRTERDYVLYWMIANRRTRCNFSLQRAVDWAQQLKKPLIVFEALRIDYPWA 67
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLF--QGEAEDNIPNFVRECGASLLVTDFSPLR 132
R F+L+G+R + + +L++ + G+ ED+ + ++VTD P
Sbjct: 68 SRRFHRFVLQGMRDNAAALRRS-PVLYYPYVEPGKHEDHGLFAALAARSCVIVTDDFPCF 126
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ R + RV V + +VD++ ++P+ A+++ A + R ++ L ++L+D+P
Sbjct: 127 FLPRMVRAVARRVD--VLLEQVDSNGILPM-RAADRTFTVAHSFRRFLHHQLRDHLVDFP 183
Query: 193 MLEQPIEKWTGTRQS--------IDWDSIIAAVLRKGAEVPE-IGWCESGEDAAME---- 239
+ P++ R + ++ + VL +E + + +S DA ME
Sbjct: 184 QAD-PLQDAQIPRAASKLIANIQTNYPPASSEVLSAASEALDALPIDQSVGDAVMEGGSV 242
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA-----QRCALEARKAR 294
+ + D FL RL Y +RN+P + A SGLSPYLHFG ISA Q E+
Sbjct: 243 AAQQTLDSFLGDRLLRYGEERNSP-ESDAASGLSPYLHFGHISAHDIFVQLSERESWNVS 301
Query: 295 KLCPEAI-------------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
L +A ++FL+ELI RE+ N C + NYD + +WA +L +
Sbjct: 302 HLADKATGSREGWWNMSTDAESFLDELITWREVGYNMCSRESNYDRYQSLPDWALVTLGE 361
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEA 401
H D R ++Y Q E ++T D LWNA+Q ++V G+MH ++RM W KKILEW+T PEEA
Sbjct: 362 HQKDPRPYVYDLAQLESSRTHDQLWNAAQSQLVREGRMHNYLRMLWGKKILEWSTTPEEA 421
Query: 402 LAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDV 460
LA I LN+KY +DGR+PN Y G W + G +D+ W ER +FGKIRYM+ RK V
Sbjct: 422 LAAMIQLNNKYAVDGRNPNSYSGIFWCL-GRYDRAWGPERKIFGKIRYMSSENTARKIPV 480
Query: 461 DGYI 464
YI
Sbjct: 481 KRYI 484
>gi|24586404|ref|NP_724615.1| CG18853 [Drosophila melanogaster]
gi|21627731|gb|AAG22302.2| CG18853 [Drosophila melanogaster]
gi|162944954|gb|ABY20546.1| TA01342p [Drosophila melanogaster]
Length = 330
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/164 (63%), Positives = 125/164 (76%), Gaps = 3/164 (1%)
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
ADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++Q+++V
Sbjct: 170 ADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLV 229
Query: 375 YNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
GKMHGF+RMYWAKKILEWT PE AL AI LNDKY +DGRDPNGYVGCMWSI GVHD
Sbjct: 230 REGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHD 289
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
GWKER +FGK+RYMNY GC+RKFDV+ A+V R G K++
Sbjct: 290 MGWKERAIFGKVRYMNYQGCRRKFDVN---AFVMRYGGKVHKKK 330
>gi|291334324|gb|ADD93984.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
MedDCM-OCT-S09-C3]
Length = 496
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 250/485 (51%), Gaps = 66/485 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM +R R N AL HAV+ AN+++VP+ V L A R F+L+G+ +
Sbjct: 21 VVYWMTSARRARWNHALDHAVELANEHHVPLIVVECLALGHRYANDRIHTFVLQGM-MDN 79
Query: 91 RNIEETFQILFFLF----QGEAEDNIPNFVRECGASLLVTDFSPL--REIRRCKDKICNR 144
R + E + + + + +A + +F ++ A +++ D+ R++ R K+
Sbjct: 80 RKLFEMSAVTYVPYVETKKFQAGGLLQSFAKDAVA-VVIDDYPTYMPRDVARRAKKLTQ- 137
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG- 203
++ +D++ VVP+ A E+ +A + R I++ + ++ D P L P+++
Sbjct: 138 ----CSVRCIDSNGVVPL-RAPERSFSTAHSFRRYIHQNVLNFIAD-PPLSHPLKELNDV 191
Query: 204 ------TRQSIDWDSI----------IAAVLRKG----------AEVPEIGWCESGEDAA 237
+Q + +I ++ R+G +VP + G A
Sbjct: 192 PDGSIIVKQCFEEVNIPLTPLEFIWRVSEASREGRDALQALDIDHDVPPVDSRRGGSVTA 251
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
LK F+ +RL Y DRN+P + SGLSP+LHFG IS+ E ++K
Sbjct: 252 RTELK----KFIEQRLNTYHVDRNHPER-HGGSGLSPWLHFGHISSFEIVNEVLTSQKWN 306
Query: 298 P------------------EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 339
P E + FL+++I REL +C+ P++ S + EWA+K+L
Sbjct: 307 PMLITPPHNGRRAGWWGLSEGAEAFLDQVITWRELGFVYCYEHPDHTSYQTLPEWAKKTL 366
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPE 399
++HA+D+R ++YT EQ E A+T DPLWNA+Q ++ G +H ++RM W KK+LEW PE
Sbjct: 367 EEHATDERPYVYTFEQLENAETHDPLWNAAQTQLRKEGIIHNYLRMLWGKKVLEWCPDPE 426
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
+A I LND++ +DGRDPN Y G W I G D+GW ER VFGKIRYM + +RKF
Sbjct: 427 KACEWLIQLNDRWALDGRDPNSYTGIFW-IFGRFDRGWFERSVFGKIRYMTSASTQRKFK 485
Query: 460 VDGYI 464
+ YI
Sbjct: 486 TEDYI 490
>gi|293652305|gb|ADE60791.1| CPD photolyase [Trichoplusia ni]
Length = 233
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 153/229 (66%), Gaps = 6/229 (2%)
Query: 163 WVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
WVAS+K EYSA+T+R KIN L EYL ++P + + + IDWD I +
Sbjct: 4 WVASDKQEYSARTIRNKINSKLDEYLTEFPPVIKHPYTAKFEPEPIDWDEAIVS-READK 62
Query: 223 EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
V + W G D A+++LK FL RLK + T RN+P K ALS LSP+ HFGQIS
Sbjct: 63 NVGPVAWARPGYDEAVKMLKS----FLDNRLKVFATKRNDPTKD-ALSNLSPWFHFGQIS 117
Query: 283 AQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH 342
QR AL ++ + E+++ FLEE IVRRELADNFCFY +YDS+KGA +WA+K+L DH
Sbjct: 118 VQRVALSVQEHKSKYTESVNAFLEEAIVRRELADNFCFYCEHYDSIKGASQWAQKTLDDH 177
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI 391
DKR HIYT +Q K++T D LWN++Q+++V GKMHGF+RMYWAKKI
Sbjct: 178 RKDKRTHIYTLDQLAKSETHDDLWNSAQIQLVKEGKMHGFLRMYWAKKI 226
>gi|343485400|dbj|BAJ51054.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum
subterraneum]
Length = 457
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 241/465 (51%), Gaps = 35/465 (7%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
++P R+ L Q +LDK+ +VY M R N AL +AV +AN+ + V +NL ++
Sbjct: 8 LRPERVTSLAQAALDKRGEYLVYVMDASLRAYGNHALEYAVFEANRLGRSLVVVYNLDEK 67
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
R+L F+ L+ ++E LF +++ V E + ++ ++
Sbjct: 68 QPFMNTRKLHFIHGALK----KVDERLSRRGILFLVRKTESLLKLVNEAVSVVVDAGYTG 123
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
++ R K + DSV + E D VVPV AS + E A+T+R K+ L +L
Sbjct: 124 HQQTFR---KTLAKYCDSVKMVEGDV--VVPVKTASTRAEPYARTIRPKLLNKLDNFLET 178
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE--VPEIGWCE---------SGEDAAME 239
P E P+++ S D D I + + E + + G E GED A +
Sbjct: 179 VP--EIPVKQ-----SSTDLD--IEGLRYETFEHLLKDFGSIEFVEPVKDVVGGEDEAHK 229
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L + F+ +RL Y +R++P A S LSPYL +G IS + + R+
Sbjct: 230 RL----ETFVGERLDRYAAERSDP-GSEACSELSPYLRYGMISPVQVLKRVFEYRRRGDV 284
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+++ + EL+V RELA N Y P ++ +G EWAR++L HA D+RE +Y+ + E+A
Sbjct: 285 NVESLINELVVWRELARNGEVYNPFFEKYEGLPEWARETLSIHAGDRREQVYSMSELERA 344
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
T D WNA+Q E++ GK+H +MRMYW KK+LEWT PE A A+YLN+KY +D DP
Sbjct: 345 DTHDVYWNAAQQELLATGKIHNYMRMYWCKKLLEWTDSPETAYRYAVYLNNKYGLDAEDP 404
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
N Y+G W G +D+ + E ++GK+R M KRK ++ YI
Sbjct: 405 NSYLGISWCF-GAYDRPFTESKIYGKVRRMTDQSLKRKKQINNYI 448
>gi|170595219|ref|XP_001902292.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
gi|158590106|gb|EDP28860.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
Length = 442
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 210/391 (53%), Gaps = 41/391 (10%)
Query: 121 ASLLVTDFSPLREIRRCKDKICNR-VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
A ++ D + LRE R + + ++ V +V+ + +PV K Y+A T+R
Sbjct: 68 ACEVIIDAAYLREDRNFDENLNDKLVMKCRRFTKVEGNVTIPVATLCNKPAYNANTIRKV 127
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSI--DWDSII----------AAVLRKGAEVPEI 227
L ++L+ EKW T + W+SI+ + R +
Sbjct: 128 AWHFLDDFLL---------EKWNVTPKIYCESWESIVEYNLECMDISSECTRAYNDCRTS 178
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
+ GEDAA++VL D F+ L Y +RN P + S LSPY+HFG ++
Sbjct: 179 SVLKGGEDAALQVL----DYFIVNNLNTYDEERNIPNSGKQ-SLLSPYIHFGMLNPIMIV 233
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDK 346
++ +++ + A D FLEEL+VRRELA NF Y + YD+ EWA+K++ +H DK
Sbjct: 234 VKVKQS-EAPKSAKDAFLEELVVRRELAHNFVXYXRDTYDTFDCLPEWAKKAMDEHRHDK 292
Query: 347 REHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAI 406
RE+IY+ ++ E+ T D WNA+Q E+V+ KM G++RMYWAKK++EW+ E A A I
Sbjct: 293 REYIYSYKELEEGCTHDVYWNAAQFELVFTHKMSGYLRMYWAKKVIEWSHDYEFAYAFLI 352
Query: 407 YLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF--DVDGYI 464
NDKYE+DGRDPNGY G MW+ G+HD+ RPVFGKIRYM G +RKF +D Y+
Sbjct: 353 EQNDKYELDGRDPNGYCGVMWNF-GMHDRAHANRPVFGKIRYMCADGLRRKFRNHIDEYV 411
Query: 465 AYVKRIVG---------GTKKRRADSLVSGK 486
R G TK+R+ ++S K
Sbjct: 412 NINYRRAGRTLELNNQDQTKRRKLHKILSQK 442
>gi|47834993|gb|AAT39131.1| type II CPD DNA photolyase [Zea mays]
Length = 118
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/118 (83%), Positives = 109/118 (92%)
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRRELADNFC+YQP YDSL GAWEWARK+L DH DKREHIYT+EQ E A+T+DPLWNAS
Sbjct: 1 VRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQLENAKTSDPLWNAS 60
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
Q+EMV++GKMHGFMRMYWAKKILEWT+ PEEAL+IAIYLNDKY IDGRDPNG+VGCMW
Sbjct: 61 QLEMVHHGKMHGFMRMYWAKKILEWTSQPEEALSIAIYLNDKYHIDGRDPNGFVGCMW 118
>gi|27262422|gb|AAN87492.1| Deoxyribodipyrimidine photolyase [Heliobacillus mobilis]
Length = 257
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 145/229 (63%), Gaps = 4/229 (1%)
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
KG D F+ +L++Y RN+P +S LSPYLHFGQIS AL +++ ++
Sbjct: 33 KGLLDRFIATKLEHYGERRNDP-SLEYVSSLSPYLHFGQISPLYMALRVQESN--IRASV 89
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
D +LEELIVRREL+ NF Y YD EWAR++L H D RE Y + E T
Sbjct: 90 DAYLEELIVRRELSINFVHYNLRYDEFTALPEWARQTLYTHRVDCREFNYGLSELENGLT 149
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
DP +NA+Q E+ G +HG+MRMYW KKILEW+ PEEA IA+YLNDKY +DGRDPNG
Sbjct: 150 DDPFFNAAQTELRKRGIIHGYMRMYWGKKILEWSPSPEEAFQIALYLNDKYALDGRDPNG 209
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
Y G W G HD+ W ER +FGK+RYMN +G +RKF+ Y+ V+ +
Sbjct: 210 YTGVAWCF-GKHDRPWGERAIFGKVRYMNAAGLRRKFNAMAYVQKVEEL 257
>gi|442320785|ref|YP_007360806.1| deoxyribodipyrimidine photolyase [Myxococcus stipitatus DSM 14675]
gi|441488427|gb|AGC45122.1| deoxyribodipyrimidine photolyase [Myxococcus stipitatus DSM 14675]
Length = 486
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 170/492 (34%), Positives = 246/492 (50%), Gaps = 41/492 (8%)
Query: 10 AVQPGRIRVLKQGSLDKK-RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
AV R+ V+K L R V+YW + R +N AL A+ N +PV V L
Sbjct: 11 AVDSARVIVVKDVPLPASGRDFVLYWCMVNHRAEENHALDTAIALGNLLGLPVVVYQALR 70
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVT 126
A R + L G+ L + + + +++ + E G A+ +V+
Sbjct: 71 PDHPHASDRLHAWALEGMADLAQALASRGIPYWLELPRHPREHVAR-IAELGRRAAAVVS 129
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
DF P I + V + VDA VVP+ + L+ A TLR K+ KL PE
Sbjct: 130 DFFPTYIIPGHLRGAARTLE--VPLFAVDASCVVPMQRIA-TLQAGAYTLRPKLQKLWPE 186
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKG-------AEVPEIGWCESGEDAAME 239
YL ML K + ++ A R+ VP + G AA++
Sbjct: 187 YLGR--MLRPRPLKVRAHTLAPGFELADAREARRTLSGFHIDHSVPPLE-ERGGRKAALK 243
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L D FL ++L+ Y +RN+P + SGLSP+ H+G + A A A +AR
Sbjct: 244 AL----DTFLHQKLEGYDVERNDPGRSHQ-SGLSPFFHWGNLFAGEAARAALRARGTDDP 298
Query: 300 AIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
A+ +FLEEL+VRREL N+CF+ P + +SL G WAR++L+ H D REH+Y+ E
Sbjct: 299 AVRSFLEELLVRRELGFNYCFHTPEARQLSTESLPG---WARETLRTHQKDAREHLYSLE 355
Query: 355 QFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEI 414
Q E A TAD LWNA+Q E+ G++H ++RM W KKILEW+ PEE L +LNDKY +
Sbjct: 356 QMEHAHTADGLWNAAQRELRERGRIHNYLRMLWGKKILEWSPTPEEGLRRIAHLNDKYAV 415
Query: 415 DGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAY-------- 466
DGRDP MW + G+HD+ ++ER V GK+R M+ K+D+ Y+A
Sbjct: 416 DGRDPASVANFMW-VLGLHDRPFQERKVLGKVRPMSSPRTAEKYDLAPYMARWGRPEDPP 474
Query: 467 --VKRIVGGTKK 476
+KR+ GGT +
Sbjct: 475 VKLKRVRGGTSR 486
>gi|404494387|ref|YP_006718493.1| deoxyribodipyrimidine photo-lyase [Pelobacter carbinolicus DSM
2380]
gi|77546390|gb|ABA89952.1| deoxyribodipyrimidine photolyase, putative [Pelobacter carbinolicus
DSM 2380]
Length = 490
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 237/472 (50%), Gaps = 48/472 (10%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWM +R+ N+AL A+ A K + P+ V L A R F L G+
Sbjct: 24 ILYWMNATRRLSWNFALQRALSWARKLDRPLLVVETLPCDHPHANLRHHAFALDGMADNA 83
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSV 149
R + + + + + NI A +++ D PLRE +++ R+S
Sbjct: 84 RYMADHPATYYPFVEDQPGQNIELIAALAKHACVVLCDLRPLRESLGETEQLAGRLSGR- 142
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE---------- 199
+ VD++ ++P+ +A+++ +A +LR + + L +L++ P+ E E
Sbjct: 143 -LERVDSNGILPL-LAADREFTTAYSLRRFLQRHLLPHLLNMPLPEPLAEHTLPPCPAVP 200
Query: 200 -----KWTGT-RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+W RQ + D L G P + + G +AA + L D FL + L
Sbjct: 201 SAIRKRWPAADRQLLTEDRSRLHNLPIGQNTPAVP-TKGGSEAARKAL----DLFLREHL 255
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC---------------ALEARKARK--- 295
Y RN P + SGLSPYL +G IS+ LE R R
Sbjct: 256 DLYVAHRNQPQR-DVTSGLSPYLRWGHISSHEIVQRLLDREGWHPSDLGLETRGQRSGWW 314
Query: 296 -LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
+ +A + FL++L+ REL FCF + +YD ++ WA+ +L+DH D R ++Y+ E
Sbjct: 315 GVGADA-EAFLDQLVTWRELGHLFCFKRHDYDRMESLPAWAQTTLQDHMQDPRPYLYSLE 373
Query: 355 QFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEI 414
+F+ +T DPLWNA+QM++V G++H ++RM W KKIL+W+ PE ALA I LND++ +
Sbjct: 374 EFQAGRTHDPLWNAAQMQLVREGRLHNYLRMLWGKKILQWSPTPELALATMIELNDRFAL 433
Query: 415 DGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIA 465
DG DPN Y G W + G D+ W +RPVFGKIRYM+ RK VD YIA
Sbjct: 434 DGCDPNSYSGIGW-VLGRFDRAWGPQRPVFGKIRYMSSRNTARKVAVDKYIA 484
>gi|296121685|ref|YP_003629463.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
gi|296014025|gb|ADG67264.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
Length = 493
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 157/495 (31%), Positives = 246/495 (49%), Gaps = 43/495 (8%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R L L K V+YWM +R++ N+ L AV +A N+P+ + + +
Sbjct: 10 SRVRQLNSCPLKKSGRYVLYWMISARRLQWNFGLQQAVHRAQTLNLPLVILEPIGCRAKW 69
Query: 74 AKARQLGFMLRGLRLLQRNIEE---TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ R F++ G+ +E + G + + ++ A ++TD P
Sbjct: 70 SSVRFHHFVIEGMAEHHALCQERGIAYHPYVEPEPGHGVGLVEAYAQKAAA--VITDDFP 127
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+ R + R+ V + VD++ + P+ A++++ +A R + K + YL +
Sbjct: 128 CYFLPRMVQTLGQRI--DVPLECVDSNGIFPM-RATDQVFTTAHAFRRFLQKNIKPYLSE 184
Query: 191 YPM---LEQPIEKWTGTRQ-SIDWDSIIAAVL-RKGAEVPEIGWCESGEDAAME-VLKGS 244
+P+ L PI Q + W +L R + + ++ ++ + AA LK +
Sbjct: 185 FPVADSLAGPILSMEIPGQIARKWSPATPGLLNRDASALAQLPIDQTVQPAAFRGGLKAA 244
Query: 245 KDG---FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR-----CALEARKARKL 296
++ F RL Y DRNNP + A SGLSPYLHFG +SA A E+ K L
Sbjct: 245 QEAVARFFKSRLPRYADDRNNPEQ-EAASGLSPYLHFGHVSAHEVFSRLAAKESWKPEHL 303
Query: 297 CPE--------------AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH 342
PE A + FL+ELI RE+ NF ++ +YD + WAR+SL+ H
Sbjct: 304 -PEKASGSREGWWQMSPAAEAFLDELITWREVGYNFTSHREDYDQYESLPAWARQSLEKH 362
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEAL 402
A D R +Y Q E AQT D LWNA+Q ++V G+MH ++RM W KK+LEW+ P++A+
Sbjct: 363 AGDHRPSLYDLHQLEIAQTHDELWNAAQRQLVREGRMHNYLRMLWGKKVLEWSLTPQQAV 422
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVD 461
I+LN+KY +DGR+PN Y G W + G +D+ W ERP+FG IRYM+ RK V
Sbjct: 423 ETLIHLNNKYAVDGRNPNSYSGIFW-VFGRYDRAWGPERPIFGTIRYMSSDNTARKLPVK 481
Query: 462 GYIAYVKRIVGGTKK 476
Y+ KR + K
Sbjct: 482 DYL---KRYAASSGK 493
>gi|405360763|ref|ZP_11025704.1| Deoxyribodipyrimidine photolyase, type II [Chondromyces apiculatus
DSM 436]
gi|397090452|gb|EJJ21316.1| Deoxyribodipyrimidine photolyase, type II [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 488
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 238/476 (50%), Gaps = 43/476 (9%)
Query: 11 VQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
V R++V+K L +R V+YW + R N AL A+ N+ +PV V +
Sbjct: 12 VDSSRVQVVKDIPLPSGRREFVLYWCMVNHRAEQNHALDAAIGLGNQLGLPVVVYQAIRP 71
Query: 70 QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTD 127
+ A R + L G+ + + + +++ P E G A+ +V+D
Sbjct: 72 DYPYASDRLHAWALEGMMDMATDCAARGLPYWLELPRTTKEHRPRLA-ELGRRAAAVVSD 130
Query: 128 FSP-------LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
P LR + D V + VDA VVP+ + + + A TLR K+
Sbjct: 131 LFPTFIIPGHLRGAAKALD---------VPLFAVDASCVVPMQRIATR-QIGAYTLRPKL 180
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKG----------AEVPEIGWC 230
KL PEYL G + S D+D+ A R+ A + E G
Sbjct: 181 KKLWPEYLERTVPSRDVKAAAAGRKLSPDFDTADAHEAREALHTFDLDHAVAPISERGGR 240
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++G LK +D F+ + L++Y T RN+P ++ SGLSP+ H+G + A A
Sbjct: 241 KAG-------LKAMRD-FVRRNLESYDTGRNDPGLAQS-SGLSPFFHWGNLFPGEAARAA 291
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW--EWARKSLKDHASDKRE 348
KAR ++ +F+EEL+VRREL N+C++ P L A WAR+SL H D RE
Sbjct: 292 IKARGAKDPSVQSFIEELLVRRELGFNYCYHTPGPQQLSVASLPPWARESLTKHQKDARE 351
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYL 408
H Y+ +Q E A+T D LWNA+Q E++ G++H ++RM W KK+LEW+ P+ AL +L
Sbjct: 352 HRYSMKQLETARTEDGLWNAAQRELMERGRIHNYLRMLWGKKLLEWSPSPKVALQRIAFL 411
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
NDKY +DGRDP MW + G+HD+ ++ER V GK+R M+ + K+D+ Y+
Sbjct: 412 NDKYAVDGRDPASVANFMW-VLGLHDRPFQERKVLGKVRPMSSARTADKYDLAPYL 466
>gi|412989100|emb|CCO15691.1| deoxyribodipyrimidine photolyase [Bathycoccus prasinos]
Length = 579
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 238/498 (47%), Gaps = 73/498 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM QR R N AL AV++AN + PV VAF L + A R FM++GL ++
Sbjct: 65 VLYWMQSSQRARYNEALEVAVERANAHKKPVVVAFALTCDYEDANERHYNFMVKGLLDVK 124
Query: 91 RNIEETFQILFFLFQGEAE--------DNIPNFVRECG--ASLLVTDFSPLREIRRCKDK 140
+ + FFL + + IP + A ++TD LR +R ++
Sbjct: 125 EGLSRR-NVPFFLVTKKKKRKEEKEDASGIPEAILSLSKNAIEIITDCGYLRVLRIWRET 183
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWV---ASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ +VS + I EV+ VVPV+ + KL+ SA + R E+ + P LE+
Sbjct: 184 LARKVS--IPITEVETDVVVPVFAHLSSRPKLDVSAASFRAFALPKSFEHTENVPDLEEI 241
Query: 198 IEKWTG-----TRQSI-------------------------------DWDSIIAAVLRKG 221
+ W R S+ D I++ + +
Sbjct: 242 VPLWNAEDVKKARMSVMDVLDDRFAFVIDGRIASSSSSSTPSTSAKQTADDILSVLKTEF 301
Query: 222 A--EVPEIGWCE----SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPY 275
E P I C+ GE AM L D + ++ D + L+ S L+PY
Sbjct: 302 GLKETPHIPKCDKYHIGGEIEAMLKLDAFLDSVVLRKYGELRNDCSLGLQ----SHLAPY 357
Query: 276 LHFGQISAQRCALEAR------KARKLCPEAIDTFLEELIVRRELADNFCFYQ-PNYDSL 328
+H+GQIS A AR K + ++++ FL+ELI+RREL F + YD+
Sbjct: 358 IHYGQISVLHVAKRARRFANAHKTDEKIQKSVEVFLDELIIRRELGIQFVVKKRETYDTF 417
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
W +L+ H D+RE YT E+ EK QT DPLWNA+Q E+ +GK H + RMYW
Sbjct: 418 DALPIWCINTLEKH-KDERETRYTYEELEKGQTDDPLWNAAQNELRISGKTHNYTRMYWG 476
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
KK++EW EA + + LND Y +DGRDPN Y G W + G++D+ + E P+ G++R
Sbjct: 477 KKVVEWFRDSREAWTVLMRLNDTYSLDGRDPNSYTGVGW-VFGLNDRSFPEAPIMGEVRR 535
Query: 449 MNYSGCKRKFD--VDGYI 464
M+ SGCK+KF +D YI
Sbjct: 536 MSMSGCKKKFGKAIDAYI 553
>gi|47834995|gb|AAT39132.1| type II CPD DNA photolyase [Picea glauca]
Length = 118
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 109/118 (92%)
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRREL+DNFC+YQPNYDSL+GA+EWAR +L HASDKREHIYT+E+ EK +T D LW+AS
Sbjct: 1 VRRELSDNFCYYQPNYDSLQGAYEWARSTLLAHASDKREHIYTQEELEKGKTHDELWDAS 60
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
Q+EMV+ GKMHGFMRMYWAKKILEWT GPEEALA+AIYLNDKYE+DGRDPNG+VGCMW
Sbjct: 61 QLEMVHLGKMHGFMRMYWAKKILEWTRGPEEALAVAIYLNDKYELDGRDPNGFVGCMW 118
>gi|338535392|ref|YP_004668726.1| deoxyribodipyrimidine photolyase [Myxococcus fulvus HW-1]
gi|337261488|gb|AEI67648.1| deoxyribodipyrimidine photolyase [Myxococcus fulvus HW-1]
Length = 488
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 233/484 (48%), Gaps = 59/484 (12%)
Query: 11 VQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
V R++V+K L +R V+YW + R N AL A+ N +PV V +
Sbjct: 12 VDSARVQVVKDLPLPSGRREFVLYWCMVNHRAEQNHALDAAIGLGNHLGLPVVVYQAIRP 71
Query: 70 QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV---RECGASLLVT 126
+ A R + L G+ + + ++++ P R A +V+
Sbjct: 72 DYPYASDRLHAWALEGMMDMAAGCAARGLPYWLELPRTSKEHQPRLAWLGRRAAA--VVS 129
Query: 127 DFSP-------LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
D P LR R D V + VDA VVP+ + + + A TLR K
Sbjct: 130 DLFPTFIIPGHLRGAARALD---------VPLFAVDASCVVPMQRIATR-QVGAYTLRPK 179
Query: 180 INKLLPEYL--------IDYPMLEQPIEKWTGTR---------QSIDWDSIIAAVLRKGA 222
+ KL PEYL + + +E T + D+D +A + +G
Sbjct: 180 LKKLWPEYLERTVPHRAVKAAAAGRKLEPGFATSDAREAREALHTFDFDHGVAPLQERG- 238
Query: 223 EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
G A ++ L+ F+ +RL+ Y T RN+P ++ SGLSPY H+G +
Sbjct: 239 ----------GRKAGLQALRA----FVQRRLEGYDTGRNDPGLQQS-SGLSPYFHWGNLF 283
Query: 283 AQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD--SLKGAWEWARKSLK 340
A A +AR ++ F+EEL+VRREL N+CF+ P S+ WAR++L
Sbjct: 284 PGEAARAAIQARGANDASVQGFIEELLVRRELGFNYCFHTPEKQQLSVSSLPPWARETLT 343
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEE 400
H D REH Y+ +Q E A+TAD LWNA+Q E+V G++H ++RM W KK+LEW+ P+
Sbjct: 344 RHQQDAREHRYSLKQLETARTADGLWNAAQRELVERGRIHNYLRMLWGKKLLEWSPSPKV 403
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 460
AL +LNDKY +DGRDP MW + G+HD+ ++ER GK+R M+ + K+D+
Sbjct: 404 ALQRIAFLNDKYAVDGRDPASVANFMW-VLGLHDRPFQERKALGKVRPMSSARTAAKYDL 462
Query: 461 DGYI 464
Y+
Sbjct: 463 APYL 466
>gi|220918322|ref|YP_002493626.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1]
gi|219956176|gb|ACL66560.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1]
Length = 486
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 162/492 (32%), Positives = 231/492 (46%), Gaps = 59/492 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L L +R V++WM +R R N AL A + + PV V L + A
Sbjct: 7 RIRALNAAPLRPERAVVLHWMTSARRTRSNPALERAAELGRELGRPVLVVEPLRCGYPHA 66
Query: 75 KARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFV-RECGASLLVTDF 128
R F+L G+R L R + + GE + + R C +++ DF
Sbjct: 67 SDRLHAFLLEGMRDNAAALAGRAL---YHPWVERRAGEGDGLLEALAARAC--AVIADDF 121
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + R+ V + VDA VVP +A + +A R + + LP +L
Sbjct: 122 -PTGFPAQAIHAAAARLD--VRLEAVDASCVVPFRLAGKDFP-TAHAYRRHLQRTLPTWL 177
Query: 189 IDYPMLEQ------------PIE---KWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCES 232
P + P+E +W R + +D + +AA L VP G
Sbjct: 178 DRLPAEDPLARAPPPWGASVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAG--RG 235
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA--------- 283
G AA L FL + L Y RN P +PR SGLSP+LHFG +S+
Sbjct: 236 GSVAARRRLAA----FLREGLDGYAERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLR 291
Query: 284 ------QRCALEARKARK----LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
A R AR L P A + FL++L+ RELA C + P + +
Sbjct: 292 REGWTPPAVATPPRGARAGWWALSPSA-EAFLDQLLTWRELAFVTCAHVPEHRAYASLPA 350
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
WAR +L HA+D R +Y + E A+T DPLWNA+Q +++ G +HG++RM W KKILE
Sbjct: 351 WARATLARHAADPRPAVYARAALEAAETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILE 410
Query: 394 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYS 452
W+ PEEA A + LND++ +DGRDPN G W + G +D+ W ERPVFG +RYM+ +
Sbjct: 411 WSATPEEAHATLLELNDRHALDGRDPNSVAGIAWCL-GRYDRPWGPERPVFGTVRYMSSA 469
Query: 453 GCKRKFDVDGYI 464
RK+ V Y+
Sbjct: 470 NTARKWPVRRYL 481
>gi|156340369|ref|XP_001620432.1| hypothetical protein NEMVEDRAFT_v1g223118 [Nematostella vectensis]
gi|156205346|gb|EDO28332.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 190/380 (50%), Gaps = 94/380 (24%)
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
QR ++E +I F L G+ +P FV+ G +V DF PLR + + + V V
Sbjct: 79 QRELKE-LEISFHLLLGDPGKVLPEFVKTAGIGGIVVDFCPLRLPTQWVNDVVKAVPKDV 137
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID 209
I +VDAHN+VP W AS KLEY A+T+R KI+K+L E+L ++P P+ K +
Sbjct: 138 PICQVDAHNIVPCWHASPKLEYGARTIRPKIHKVLTEFLTEFP----PVIKHSHV----- 188
Query: 210 WDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
SGE K ++ T L + P ++ +
Sbjct: 189 ----------------------SGEKT-----KITRPTCYTPILVHPPRHMHDTYQ---- 217
Query: 270 SGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY-QPNYDSL 328
I QR L R R E++++F+EE I+RREL+DNFC+Y YDS+
Sbjct: 218 -----------ILPQRAILRVRDFRSKFRESVESFIEECIIRRELSDNFCYYNNEKYDSI 266
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
+G EWARK+L DHA DKRE++Y + + EKAQT D LWNA+Q+ M +
Sbjct: 267 EGTNEWARKTLNDHAKDKREYLYARGKLEKAQTHDDLWNAAQV-MAF------------- 312
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
++ N DGR CMWS+CG+HDQGW ERPVFGKIRY
Sbjct: 313 -----------------LFCNIP---DGR-------CMWSVCGIHDQGWAERPVFGKIRY 345
Query: 449 MNYSGCKRKFDVDGYIAYVK 468
MNY GC+RKF V ++ K
Sbjct: 346 MNYKGCQRKFAVAEFVKRYK 365
>gi|187234360|gb|ACD01432.1| DNA photolyase [Thysanoplusia orichalcea NPV]
Length = 241
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 149/247 (60%), Gaps = 14/247 (5%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML-EQPIE-----KWTGTRQ 206
+VDAHN+VP WVAS K EYSA+TLR K+N+LLP +L +P + + P +
Sbjct: 1 QVDAHNIVPCWVASNKQEYSARTLRSKLNRLLPTHLTPFPFVSKHPYDSKIDPNALSMYA 60
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+IDW ++ + V + W +G A++ L F+ +L Y RNNP
Sbjct: 61 NIDWRHLLES-RDADVSVRPVDWASAGYINAVDTLAD----FIDTKLYKYKNLRNNP-NE 114
Query: 267 RALSGLSPYLHFGQISAQRCALE--ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
S LSP+ HFGQIS QR L + K I+T++EE +VRRELADN+CFY PN
Sbjct: 115 NVQSNLSPWFHFGQISVQRVVLYLLSLDDNKAIKSHIETYVEECVVRRELADNYCFYNPN 174
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
YD+L GA EWA +LK HA DKR + YT +Q E + T D LWNA+Q E+ GKMHGFMR
Sbjct: 175 YDNLAGAPEWAIATLKKHAGDKRSYCYTSDQLEYSATHDDLWNAAQTELRAKGKMHGFMR 234
Query: 385 MYWAKKI 391
MYWAKKI
Sbjct: 235 MYWAKKI 241
>gi|262198146|ref|YP_003269355.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
gi|262081493|gb|ACY17462.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
Length = 496
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 157/500 (31%), Positives = 235/500 (47%), Gaps = 48/500 (9%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
MA+ PP A+ R+R + + + R V+YWM +R R N+AL A+ + P
Sbjct: 1 MANSLPPVPAL---RVRAVGDAPVHESRRFVLYWMIAARRTRYNFALERALAWSRALGKP 57
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILF-FLFQGEAEDNIPNFVREC 119
+ V L + A R F++ G+ +T + +L
Sbjct: 58 LVVLEALRCDYPWASERLHRFVVDGMSDQSAAFADTPVAYYPYLEPRPGAGRGLLAALAA 117
Query: 120 GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
A ++VTD P + R S V + VD + + P+ A+E++ +A + R
Sbjct: 118 HACVVVTDEFPCFFLPRMVAAAAR--SLDVQVQAVDGNGLYPL-AATERVFTTAASFRRH 174
Query: 180 INKLLPEYLIDYPMLEQ-----PIEKWTGTRQSIDWDSIIAAVLRKGAE----------- 223
+ K LP +L D PM E P + +I A++ R GA
Sbjct: 175 LQKELPAHLGDMPMAEPLAHAPPRDAAHALPAAIRKRWPPASLGRPGASDALLSALRFDR 234
Query: 224 VPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA 283
E G AA E L + F+ L Y RN P P S LSPYLHFG ISA
Sbjct: 235 AVEAAPVRGGARAAGETL----ERFVRAGLPRYLEARNQPADP-VTSQLSPYLHFGHISA 289
Query: 284 QRC-----ALEARKARKLCPEA-------------IDTFLEELIVRRELADNFCFYQPNY 325
A + ++ P A ++ FL+ELI RE+ N + +Y
Sbjct: 290 HEVFRRVMARDQWTPDRMAPRATGSREGFWGASSEVEGFLDELITWREIGYNMAAKRDDY 349
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D + WA+ +L++H D R H+Y ++FE+A+T D LWNA+Q ++V G++H +MRM
Sbjct: 350 DRYESLPAWAQTTLEEHTGDPRPHLYELDEFEQARTHDALWNAAQTQLVREGRIHNYMRM 409
Query: 386 YWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFG 444
W KKILEWT P +ALA+ I LN++Y +DGR+PN Y G W + G +D+ W ERP+FG
Sbjct: 410 LWGKKILEWTRTPRDALAVMIELNNRYALDGRNPNSYSGIFWCL-GRYDRAWGPERPIFG 468
Query: 445 KIRYMNYSGCKRKFDVDGYI 464
K+R+M+ RK V Y+
Sbjct: 469 KVRFMSSQSTARKLRVTPYL 488
>gi|421609017|ref|ZP_16050222.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408500213|gb|EKK04667.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 507
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 157/494 (31%), Positives = 250/494 (50%), Gaps = 59/494 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R
Sbjct: 25 VVYWMIAQRRLHWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNA 84
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSV 149
E + + + + P R A +VTD P + D + +++ +
Sbjct: 85 TEAESLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARL 144
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK-LLPEYLIDYPMLEQPIEKWTGTRQSI 208
+ +D++ V+P+ A+EK A + R + K +LP ++ +L P+++ R ++
Sbjct: 145 EL--IDSNGVLPL-RAAEKTYTVAHSYRRFMQKNILPA--LEQLLLANPLDR-NSNRPAL 198
Query: 209 ---DWDSII--------AAVLRKG--AEVPEI----GWCESGEDAAMEVLKGSKDG---- 247
D +S+ + +L K AE+ ++ G E D ++ + + G
Sbjct: 199 PCPDGESMAERRKKLLPSKILSKWPVAELEKLLGQDGLSEIPIDHSVRPSQATPGGTAEA 258
Query: 248 ------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA-----LEARKARKL 296
FL K+L Y DRN+P + A +GLSP+LHFG ISA E A +
Sbjct: 259 SRRWQEFLNKKLSRYNDDRNHPDE-HATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQT 317
Query: 297 CP------------EAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHA 343
E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L +
Sbjct: 318 SKPNGKNHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETR 377
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALA 403
D+R H+YT +FE A+T D +WNA+Q E+V G+MH +MRM W KKIL WT PEEAL
Sbjct: 378 DDERPHLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTKTPEEALE 437
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDG 462
I+LN+KY +DGRDPN Y G +W + G D+ W +RPVFG +RYM ++K +
Sbjct: 438 FMIHLNNKYGLDGRDPNSYCGILW-VLGRTDRAWGPKRPVFGSVRYMTSDSTRKKLKL-- 494
Query: 463 YIAYVKRIVGGTKK 476
Y++R G KK
Sbjct: 495 -TKYLQRFAGSNKK 507
>gi|312091466|ref|XP_003146989.1| DNA photolyase 1 [Loa loa]
Length = 261
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 148/230 (64%), Gaps = 6/230 (2%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D F+ LK Y +RN P + S LSPY+HFG ++ E +++ K A D FL
Sbjct: 2 DYFIANNLKAYDKERNIP-NGKKQSLLSPYMHFGMLNPITIVNEVKQS-KAPKSAKDAFL 59
Query: 306 EELIVRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
EE++VRRELA NF +Y + YD+ EWA+K++++H DKRE+IY ++ E+ +T D
Sbjct: 60 EEMVVRRELAHNFVYYYRDTYDTFDCLPEWAKKTMEEHRFDKREYIYNYKELEEGRTHDV 119
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
WNA+Q E+V+ KM G++RMYWAKK++EW+ E A A I NDKYE+DGRDPNGY G
Sbjct: 120 YWNAAQFELVFTHKMSGYLRMYWAKKVIEWSPDYERAYAFLIEQNDKYELDGRDPNGYCG 179
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF--DVDGYIAYVKRIVG 472
MW+ G+HD+ RPVFGKIRYM G +RKF +D Y++ R G
Sbjct: 180 VMWNF-GIHDRAHANRPVFGKIRYMCADGLRRKFRNHIDDYVSINYRRAG 228
>gi|195976053|gb|ACG63558.1| DNA photolyase II [Pseudoplusia includens nucleopolyhedrovirus]
Length = 241
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 149/247 (60%), Gaps = 14/247 (5%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML-EQPIE-----KWTGTRQ 206
+VDAHNVVP WVAS K EYSA+TLR K+N+LLP +L +P + + P +
Sbjct: 1 QVDAHNVVPCWVASNKQEYSARTLRSKLNRLLPTHLTPFPFVSKHPYDSKIDPNALSMYA 60
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+IDW ++ + V + W +G A++ L F+ +L Y RNNP
Sbjct: 61 NIDWRHLLES-RDADVSVRPVDWASAGYINAVDTLAD----FIDTKLYKYKNLRNNP-NE 114
Query: 267 RALSGLSPYLHFGQISAQRCALE--ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
S LSP+ HFGQIS QR L + K I+T++EE +VRRELADN+CFY PN
Sbjct: 115 NVQSNLSPWFHFGQISVQRVVLYLLSLDDNKAIKSHIETYVEECVVRRELADNYCFYNPN 174
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
YD+L GA EWA +LK HA DKR + YT +Q E + T + LWNA+Q E+ GK+HGFMR
Sbjct: 175 YDNLAGAPEWAIATLKKHAGDKRSYCYTSDQLEYSATHNDLWNAAQTELRAKGKIHGFMR 234
Query: 385 MYWAKKI 391
MYWAKKI
Sbjct: 235 MYWAKKI 241
>gi|32475397|ref|NP_868391.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
gi|32445938|emb|CAD78669.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
Length = 507
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 157/493 (31%), Positives = 249/493 (50%), Gaps = 57/493 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYW+ +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R
Sbjct: 25 VVYWLIAQRRLHWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNA 84
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSV 149
E + + + + P R A +VTD P + D + +++ +
Sbjct: 85 AEAESLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARL 144
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI- 208
+ +D++ V+P+ A+EK A + R + K + L P L P+++ R ++
Sbjct: 145 EL--IDSNGVLPL-RAAEKTYTVAHSYRRFMQKNILPALEQLP-LANPLDR-NSNRPALP 199
Query: 209 --DWDSII--------AAVLRK--GAEVPEI----GWCESGEDAAMEVLKGSKDG----- 247
D +S+ + +L K A++ ++ G E D ++ + + G
Sbjct: 200 CPDGESMAERRKKLLPSKILSKWPAADLEKLLGQDGLSEIPIDHSVRPSQATPGGTVEAT 259
Query: 248 -----FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA---LE-----ARKAR 294
FL K+L Y DRN+P + A +GLSP+LHFG ISA LE A +
Sbjct: 260 RRWQEFLNKKLSRYNDDRNHPDE-HATTGLSPHLHFGHISAHEMVSSILEHEGWSADQTS 318
Query: 295 KL---------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHAS 344
K E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L +
Sbjct: 319 KPNGKNHSFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRD 378
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAI 404
D+R H+YT +FE A+T D +WNA+Q E+V G+MH +MRM W KKIL WT PEEAL
Sbjct: 379 DERPHLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTQTPEEALEF 438
Query: 405 AIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGY 463
I+LN+KY +DGRDPN Y G +W + G D+ W +RPVFG +RYM ++K +
Sbjct: 439 MIHLNNKYGLDGRDPNSYCGILW-VLGRTDRAWGPKRPVFGSVRYMTSDSTRKKLKL--- 494
Query: 464 IAYVKRIVGGTKK 476
Y++R G KK
Sbjct: 495 TKYLQRFAGSNKK 507
>gi|374725105|gb|EHR77185.1| DNA deoxyribodipyrimidine photolyase [uncultured marine group II
euryarchaeote]
Length = 498
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 149/507 (29%), Positives = 234/507 (46%), Gaps = 78/507 (15%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ L ++++ V+YWM ++R N AL +A A + NVP+ V + + A
Sbjct: 8 RVSTLNTNPVNEQGKYVLYWMIANRRYHSNAALEYAAHMAKQQNVPLLVLEEISTRHKFA 67
Query: 75 KARQLGFMLRGL----RLLQRN-------IEETFQILFFLFQGEAEDNIPNFVRECGASL 123
R FM++G+ R+ + N +E AED A +
Sbjct: 68 NDRITSFMVQGMLDNIRVFRDNKIRYIPWVETPISGQIGKLHELAED----------AVM 117
Query: 124 LVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPV-WVASEKLEYSAKTLRGKINK 182
+++D P R+ + S SV VD++ V P+ W +E+ +A R +++
Sbjct: 118 VISDDFPTYFPRKAIESASK--SLSVRFLAVDSNGVFPMSW--TERAYPTAHGFRRFVHE 173
Query: 183 LLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA--------------------------A 216
E + +P T + ++++I+ +
Sbjct: 174 RFVECMETWPSHNPIPADHTLWMEDNEFNTIVQDSKLGVTPFEWLWRAGEQGSSGRDALS 233
Query: 217 VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
L VP + + G D A+ +L+ FL+ RL Y DRN P A SGLSP+
Sbjct: 234 TLDIDHSVPPVANVKGGRDTAVRMLRE----FLSNRLSRYHEDRNQVKNP-ATSGLSPWF 288
Query: 277 HFGQISAQRCALE------------------ARKARKLCPEAIDTFLEELIVRRELADNF 318
HFG +S AR PE ++ FL+++I REL N
Sbjct: 289 HFGHLSTVEVVQRILDSNGWMPDLINAPRRGARAGWWGLPEPVEAFLDQIITWRELGFNN 348
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
++ P ++ +WA+++L +HA D+R YT +Q +A T D +WNA+Q ++V G
Sbjct: 349 AYHNPEHNHFTSLPDWAKRTLSEHADDERT-TYTLDQIREADTHDEIWNAAQRQLVRKGI 407
Query: 379 MHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW- 437
+H ++RM W K+ILEW + PEEA A I LND Y +DGRDPN Y G W + G HD+ W
Sbjct: 408 IHNYLRMLWGKRILEWASSPEEAAAWMIELNDTYALDGRDPNSYTGIFW-VLGRHDRAWG 466
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYI 464
ER +FGKIRYM+ +RKFD+ Y+
Sbjct: 467 PERAIFGKIRYMSSENTRRKFDLKPYL 493
>gi|301057335|ref|ZP_07198453.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
gi|300448565|gb|EFK12212.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
Length = 499
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 155/504 (30%), Positives = 240/504 (47%), Gaps = 57/504 (11%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
AV RIR ++ + +YWM +RV N++L AV+ A K N P+ + L
Sbjct: 4 AVSESRIRSANDAPINSRGHFALYWMTACRRVHWNYSLDRAVEWALKLNKPLVILEALRT 63
Query: 70 QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG--EAEDNIPNFVRECGASLLVTD 127
+ A R GF++ G+R + +++ +L++ + E D A+++VTD
Sbjct: 64 GYPWASDRFHGFIMAGMRDNRAALKDR-NVLYYPYVAPDENADKGLLEALALKAAIVVTD 122
Query: 128 FSPL----REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKL 183
P IR + + +V + +VD + ++P+ ++++ +A + R + K
Sbjct: 123 DFPAFFLPNMIRSAAETL------TVRLEQVDGNGILPI-ADTDRIFTTAYSFRRFLQKN 175
Query: 184 LPEYLIDYP----------------MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEI 227
L +L P ++E+ +KW + D + + I
Sbjct: 176 LIPHLCAPPKASALKGRSLKNPSRSLVEEIQKKWPPAPLN---DLNATPLNLNPYPIDHI 232
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA---- 283
GE A+ L+ K F+ L +Y RN P +P SGLSPYLHFG +S
Sbjct: 233 IPPVPGEGGAVRGLRMLKR-FIMSGLPHYADGRNQPDQP-VTSGLSPYLHFGHVSPHQVF 290
Query: 284 -----------QRCALEARKARKL----CPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
Q+ A + R+ E + FL++LI REL N C + YD
Sbjct: 291 HEIARNQGWQRQKSAEKKVDGRRAGWWGMDENAEAFLDQLITWRELGFNMCRHDEKYDRY 350
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
+W R +L+ H DKR ++Y E FE AQT D LWNA+Q ++V G++H ++RM W
Sbjct: 351 ASLPQWVRDTLEAHEKDKRPYVYALEDFENAQTHDSLWNAAQNQLVREGRIHNYLRMLWG 410
Query: 389 KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIR 447
KKIL W+ P EAL I I LN++Y +DGRDPN Y G W + G +D+ W ERPVFGK+R
Sbjct: 411 KKILHWSASPREALDIMIRLNNRYALDGRDPNSYSGIFW-VLGRYDRAWGPERPVFGKVR 469
Query: 448 YMNYSGCKRKFDVDGYI-AYVKRI 470
YM+ RK Y+ Y R+
Sbjct: 470 YMSSKNTARKIRTGEYVKKYATRV 493
>gi|197123524|ref|YP_002135475.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K]
gi|196173373|gb|ACG74346.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K]
Length = 486
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 161/492 (32%), Positives = 230/492 (46%), Gaps = 59/492 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L L +R V++WM +R R N AL A + + PV V L + A
Sbjct: 7 RIRALNAAPLRPERAVVLHWMTSARRTRSNPALERAAELGRELGRPVLVLEPLRCGYPHA 66
Query: 75 KARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFV-RECGASLLVTDF 128
R F+L G+R L R + + GE + + R C +++ DF
Sbjct: 67 SDRLHTFLLEGMRDNAAALAGRAL---YHPWVERRAGEGDGLLEALAARAC--AVIADDF 121
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + R+ V + VDA VVP +A + +A R + + LP +L
Sbjct: 122 -PTGFPAQAIHAAAARLD--VRLEAVDASCVVPFRLAGKDFP-TAHAYRRHLQRTLPAWL 177
Query: 189 IDYPMLEQ------------PIE---KWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCES 232
P + P+E +W R + +D + +AA L VP G
Sbjct: 178 DRLPAEDPLARAPPPWGASVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAG--RG 235
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA--------- 283
G AA L FL L Y RN P +PR SGLSP+LHFG +S+
Sbjct: 236 GSVAARRRLAA----FLRDGLDGYSERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLR 291
Query: 284 ------QRCALEARKARK----LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
A R AR L P A + FL++L+ RELA C + P++ +
Sbjct: 292 REGWTPPAVAAPPRGARAGWWALSPSA-EAFLDQLLTWRELAFVTCAHVPDHRAYASLPA 350
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
WAR +L HA+D R Y + E A+T DPLWNA+Q +++ G +HG++RM W KKILE
Sbjct: 351 WARATLARHAADPRPASYGRAALEAAETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILE 410
Query: 394 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYS 452
W+ PEEA A + LND++ +DGRDP+ G W + G +D+ W ERPVFG +RYM+ +
Sbjct: 411 WSPTPEEAHATMLELNDRHALDGRDPSSVAGVAWCL-GRYDRPWGPERPVFGTVRYMSSA 469
Query: 453 GCKRKFDVDGYI 464
RK+ V Y+
Sbjct: 470 NTARKWPVRRYL 481
>gi|108759895|ref|YP_632311.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
gi|108463775|gb|ABF88960.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
Length = 488
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 236/481 (49%), Gaps = 51/481 (10%)
Query: 10 AVQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
V R++V+K L +R V+YW + R N AL A+ N +PV V +
Sbjct: 11 GVDSARVQVVKDLPLPSGRRDFVLYWCMVNHRAEQNHALDAAIGLGNHLGLPVVVYQAIR 70
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVT 126
+ A R + L G+ + + ++++ P + G A+ +V+
Sbjct: 71 PDYPHASDRLHAWALEGMMDMATGCAARGLPYWLELPRTSKEHRPRLA-QLGRRAAAIVS 129
Query: 127 DFSPLREIR---RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKL 183
D P I R K + V + VDA VVP+ + + + A TLR K+ KL
Sbjct: 130 DLFPTYIIPGHLRGAAKALD-----VPLFAVDASCVVPMQRIATR-QIGAYTLRPKLKKL 183
Query: 184 LPEYLIDYPMLEQPIEKWTGTRQ------------------SIDWDSIIAAVLRKGAEVP 225
PEYL D + + ++ R+ + D+D +A + +G
Sbjct: 184 WPEYL-DRAVPNRAVKAAAAGRKLEPDFATSDARESRESLDAFDFDHSVAPIQERG---- 238
Query: 226 EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
G A ++ L+ F+ +RL+ Y RN+P R S LSP+ H+G + A
Sbjct: 239 -------GRKAGLDALQA----FVHQRLEGYDEGRNDPGLARQ-SNLSPFFHWGNLFAGE 286
Query: 286 CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW--EWARKSLKDHA 343
A A +AR ++ FLEEL+VRREL N+CF+ P L A WA+++L H
Sbjct: 287 AARAAIRARGAQDASVQGFLEELLVRRELGFNYCFHTPGPQQLSVASLPPWAKETLTRHQ 346
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALA 403
D REH Y+ +Q E A+TAD LWNA+Q E+V G++H ++RM W KKILEWT P+EAL
Sbjct: 347 KDAREHRYSLKQLETARTADGLWNAAQRELVERGRIHNYLRMLWGKKILEWTPSPQEALQ 406
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
+LNDKY +DGRDP MW + G+HD+ ++ER V GK+R M+ ++++ Y
Sbjct: 407 RIAFLNDKYAVDGRDPASVANFMW-VLGLHDRPFQERQVLGKVRPMSSLRTAARYNLAPY 465
Query: 464 I 464
+
Sbjct: 466 L 466
>gi|189911853|ref|YP_001963408.1| deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167776529|gb|ABZ94830.1| Deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
Length = 523
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 158/518 (30%), Positives = 254/518 (49%), Gaps = 63/518 (12%)
Query: 2 ASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPV 61
+L+PP V+ RIRV + + ++ V+YWM +R N A HAV+ A + N +
Sbjct: 19 GNLSPPLIGVKSDRIRVCNEKPIQLEKSYVLYWMQAYRRFDANHAFNHAVNLAKELNKEL 78
Query: 62 AVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG- 120
V L + R F+L G+ Q +E +I ++ F ++ ++E
Sbjct: 79 IVYEGLRMDYPWNSERIHQFILEGMIENQTRADE-LEIKYWPFVETPKNLGKGLLKEISE 137
Query: 121 -ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
AS++VTD P I +K+ ++ + +D ++++P + K +A+ LR
Sbjct: 138 NASVVVTDDFPCFIIPEQTEKLAKKIH--CQLLAIDGNSLIP-FSRFAKQASAARILRLW 194
Query: 180 INKLLPEYLIDYPMLE----------------QPIEKWTGTRQSIDWDSIIAAVLRKGAE 223
I+K L ++P + P E+ G +SID I+ + +
Sbjct: 195 IHKELNR---EFPKMNTIIWKNEDLSKLNGKTNPPER-IGLPKSID--GILKLIPFQNIV 248
Query: 224 VPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR--ALSGLSPYLHFGQI 281
P G + G + A+ +L + FL +L Y T R+ P +P A SGLSPYLHFG I
Sbjct: 249 SPVKG-VKGGRNEALRLL----NDFLKHKLDLYLTKRSEPNRPELTATSGLSPYLHFGWI 303
Query: 282 SAQR---CALEARKARKLCPE------------------AIDTFLEELIVRRELADNFCF 320
L+ K PE + + FL+ELI R++ + F
Sbjct: 304 GLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHFYSPSVSANHFLDELITWRDIG--YLF 361
Query: 321 Y---QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
+ +P +L +W + + + H +D RE++YT EQFE A+T D LWNA+Q E+V G
Sbjct: 362 FWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTLEQFESAKTHDELWNAAQTELVKTG 421
Query: 378 KMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
K+H +MRM W KK++EW+ EEA I +LN+KY DGR+PN Y G +W G+ D+ W
Sbjct: 422 KIHNYMRMLWGKKVIEWSKTYEEAFFILEHLNNKYAYDGRNPNSYTGILWCF-GLFDRPW 480
Query: 438 -KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGT 474
ER VFG +R+M+ K+KF ++ Y+ Y+ + G +
Sbjct: 481 FPERNVFGNVRFMSSDSTKKKFKLNSYLEYIGELSGKS 518
>gi|47834997|gb|AAT39133.1| type II CPD DNA photolyase [Marchantia polymorpha]
Length = 118
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/118 (78%), Positives = 106/118 (89%)
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRREL DN+C+YQPNYD+L+GA+ WAR+SL+ HA+D RE++YTKEQ EK QT D LWNAS
Sbjct: 1 VRRELGDNYCYYQPNYDNLQGAFPWARESLQKHAADPREYVYTKEQLEKGQTYDELWNAS 60
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
Q EMV++GKMHGFMRMYWAKKILEWT PEEALAIAI LNDKYEIDGRDPNG+VGCMW
Sbjct: 61 QHEMVHHGKMHGFMRMYWAKKILEWTPSPEEALAIAIELNDKYEIDGRDPNGFVGCMW 118
>gi|283778509|ref|YP_003369264.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
gi|283436962|gb|ADB15404.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
Length = 502
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 158/495 (31%), Positives = 244/495 (49%), Gaps = 61/495 (12%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIRVL+ + V+YWM +R R N++L AV+ A + P+ + + ++ A
Sbjct: 8 RIRVLRDLPVRADGEFVLYWMIAFRRRRSNFSLQRAVEWARELRKPLVILEAVRTRYEWA 67
Query: 75 KARQLGFMLRGLRLLQRNIEETFQ--ILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F++ G++ ++ E Q +++ + + A++++TD P
Sbjct: 68 SDRLHRFIIEGMQDNAHDLGELRQSGVVYHPYVEPTHGAGAGLLEALAKRAAVVITDDFP 127
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL-- 188
+ + +V V + +D + ++P+ A++K A R + K L +L
Sbjct: 128 CFFLPQMTKVAARKVP--VRMETIDGNGILPM-RAADKTFTMAFHFRRWLQKNLKPHLAE 184
Query: 189 -----------IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP---------EIG 228
+ P L++ + T + D+ ++ A R A++P E+G
Sbjct: 185 EAFPEEDPLARVKLPALKKLPAEITERWPAADFKQLLGA--RGLAQLPIDHSVTPTSEVG 242
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS----AQ 284
G +A VL + FL RL Y +RN P A SGLSP+LHFG +S A+
Sbjct: 243 ----GAASAARVL----ERFLDSRLSRY-GERNEP-DANAASGLSPWLHFGHVSVHDIAR 292
Query: 285 RC-ALEARKARKLCPE-------------AIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
R A E+ KL + A + FL+ELI RE+ NFC N+D +
Sbjct: 293 RALARESWSHAKLSAKTDGKAGAWWGVSAACEGFLDELITWREIGFNFCSRNDNFDQDES 352
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390
W +K+L HA D R ++YT +QFE + T D LWNA+Q ++V G++H +MRM W KK
Sbjct: 353 LPTWVQKTLDKHAVDPRPNLYTLDQFESSTTHDLLWNAAQRQLVREGRIHNYMRMLWGKK 412
Query: 391 ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK-ERPVFGKIRYM 449
ILEW+T P EAL I I LN+KY +DGR+PN Y G W I G +D+ W ERP+FG IRYM
Sbjct: 413 ILEWSTSPREALRIMIQLNNKYALDGRNPNSYSGIFW-ILGRYDRPWSPERPIFGNIRYM 471
Query: 450 NYSGCKRKFDVDGYI 464
+ RK V Y+
Sbjct: 472 SSDNTARKLRVKNYL 486
>gi|70934909|ref|XP_738613.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase) [Plasmodium chabaudi chabaudi]
gi|56514975|emb|CAH79340.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium chabaudi chabaudi]
Length = 368
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 203/383 (53%), Gaps = 27/383 (7%)
Query: 53 QANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL---FFLFQGEAE 109
+ NK N+ N +QF R + L+ L+ N+EE F+ L F++
Sbjct: 1 KKNKCNLLACTYINRKEQF---TERHINIKLKVLK----NLEEEFKKLNIPFYVIPIFMI 53
Query: 110 DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS-VTIHEVDAHNVVPVWVASEK 168
D F+R +V DF PL ++ + + + + + + +VD+HN++P+W+ S+
Sbjct: 54 DEFMEFLRIQEIKTVVCDFHPLEYQKQFVENLVHMSNKKKIKVLQVDSHNIIPLWMTSKM 113
Query: 169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAV-LRKGAEVPEI 227
E S +T++ KI L +LI+Y LE+ ++ + D +S+ + + V
Sbjct: 114 EESSTRTIKPKIQAHLSSFLIEYIKLER-FDQTIKYPEPFDIESLYKKLTVNNSCSVISD 172
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
C E A +VL + F +L Y RN+P ++ L PY++ G IS+QRC
Sbjct: 173 FVC--TEKKARDVL----EDFCKNKLDKYGVKRNDP-NYDTINLLMPYINLGIISSQRCI 225
Query: 288 LEARKARKLCPEAIDT------FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
LE K P +I T F ++L++++ELADNFC+Y NYD+ GA +WA++SLK
Sbjct: 226 LEVNKYALQFP-SIHTSSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKESLKK 284
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEA 401
H DKR H+Y E F A+T + +WN Q+++V G +H F+RMYWAKKIL W+ + A
Sbjct: 285 HELDKRSHLYDYEDFRNARTHNDIWNCCQLQLVNEGTIHEFLRMYWAKKILNWSENSKAA 344
Query: 402 LAIAIYLNDKYEIDGRDPNGYVG 424
L AI L +++ IDG+ N Y
Sbjct: 345 LKCAIKLTNEFAIDGKTANAYAS 367
>gi|417305703|ref|ZP_12092653.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327538009|gb|EGF24703.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 479
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 152/489 (31%), Positives = 242/489 (49%), Gaps = 57/489 (11%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R E
Sbjct: 1 MIAQRRLNWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNAAEAE 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
+ + + + P R A +VTD P + D + +++ + +
Sbjct: 61 SLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARLEL-- 118
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI---DW 210
+D++ ++P+ A+EK A + R + K + L P L P+++ R ++ D
Sbjct: 119 IDSNGILPL-RAAEKTYTVAHSYRRFMQKNILPALEQLP-LANPLDR-NSNRPALPCPDG 175
Query: 211 DSII--------AAVLRKG--AEVPEI----GWCESGEDAAMEVLKGSKDG--------- 247
+S+ + +L K AE+ ++ G E D ++ + + G
Sbjct: 176 ESMAERRKKLLPSKILSKWPVAELEKLLGQDGLSEIPIDHSVRPSQATPGGTAEASRRWQ 235
Query: 248 -FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--------ALEARKARKL-- 296
FL K+L Y DRN+P A +GLSP+LHFG ISA A + K
Sbjct: 236 EFLNKKLSRYNDDRNHP-DEHATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQTSKPNG 294
Query: 297 -------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKRE 348
E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L + D+R
Sbjct: 295 KNHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERP 354
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYL 408
H+YT +FE A+T D +WNA+Q E+V G+MH +MRM W KKIL WT PEEAL I+L
Sbjct: 355 HLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTQTPEEALEFMIHL 414
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
N+KY +DGRDPN Y G +W + G D+ W +RPVFG +RYM ++K + Y+
Sbjct: 415 NNKYGLDGRDPNSYCGILW-VLGRTDRAWGPKRPVFGSVRYMTSDSTRKKLKL---TKYL 470
Query: 468 KRIVGGTKK 476
+R G KK
Sbjct: 471 QRFAGSNKK 479
>gi|255671641|gb|ACU26402.1| deoxyribodipyrimidine photolyase [uncultured bacterium
HF186_25m_30B18]
Length = 487
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 144/490 (29%), Positives = 232/490 (47%), Gaps = 39/490 (7%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ + R++ +++ + +R V+YWM +R DN+ L HA+ A VP+ V L
Sbjct: 2 TSPIPQSRVQTIQRAPIRPERRFVLYWMVSARRTTDNFGLQHALYHAETLGVPLVVFEPL 61
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS---LL 124
+ A R F+L G+R + + + + E E + + E A+ ++
Sbjct: 62 RVGYRWASERFHAFVLEGMRDNAEAFDGVAGVTYLPYV-EPEAGAGSGLLEALAAQACMV 120
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
V+D P + R DK R+ V + VD++ ++P++ A + +A + R ++K +
Sbjct: 121 VSDHFPCFFVPRMVDKAAKRLDVQVDV--VDSNGILPLFAAPREFT-TAHSFRRHVHKNV 177
Query: 185 PEYLIDYPMLEQPIEKWTGTRQSIDWDSII--AAVLRKGAEVPEIGWCESGEDAAMEVLK 242
E++ + P E + D +I AA +GA + +
Sbjct: 178 LEHVAEMPEAEPLASAELPPAPARDALNIAPWAAYTGEGALNVTLSALPIDHSVTPVSTR 237
Query: 243 GSK-------DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
G + D FL ++L Y N ++ +GLSP+LHFG I A E + +
Sbjct: 238 GGRQEAWRRLDAFLGRQLNAY--GERNQVERDIGTGLSPHLHFGHIGAHTILRELIERER 295
Query: 296 LCP------------------EAIDTFLEELIVRRELADNFCFYQ-PNYDSLKGAWEWAR 336
P E ++FL++++ REL FC + +YD + WA
Sbjct: 296 WSPDQVAPKPTGSRAGWWGMSEGAESFLDQVLTWRELGYTFCHVRWRDYDRFESLPPWAL 355
Query: 337 KSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTT 396
+L+ HA D+R +Y E + +T D LWNA+Q ++ G +H ++RM WAKKILEWT
Sbjct: 356 TTLEAHARDRRPVLYDFEALDAGKTHDMLWNAAQRQLRREGMIHNYLRMLWAKKILEWTE 415
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCK 455
P AL I LN++Y +DGRDPN Y G W + G D+ W ERP+FGKIRYM+
Sbjct: 416 HPRVALDTLIELNNRYALDGRDPNSYSGIFWCL-GRFDRAWGPERPIFGKIRYMSSENTA 474
Query: 456 RKFDVDGYIA 465
RK V YIA
Sbjct: 475 RKVRVGAYIA 484
>gi|449138593|ref|ZP_21773849.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448882783|gb|EMB13341.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 477
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 238/476 (50%), Gaps = 53/476 (11%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R E
Sbjct: 1 MIAQRRLHWNFALQHAIDRAIEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNAAAAE 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
+ + + + P R A +VTD P + D + +++ + +
Sbjct: 61 SLPVVYYPYVEPKPGAGSPLLHRLAKNACTVVTDEYPCFFLPHMIDAVKDKLPARLEL-- 118
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINK-LLP--EYLI--------DYPMLEQPI-EKW 201
+D++ V+P+ A+EK A + R + K +LP E+L D P L P E
Sbjct: 119 IDSNGVLPL-RAAEKTYTVAHSYRRFMQKNILPALEHLPLANPLAPDDRPALPCPDGESM 177
Query: 202 TGTRQSIDWDSII----AAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG---------- 247
R+ + +++ AA L K + E G + D ++ K + G
Sbjct: 178 AERRKKLLPSNVLSKWPAANLEK--LLSEGGLSKIPIDHSVRPSKATPGGTVEGSRRWKE 235
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA---LE-----ARKARKL--- 296
FL +L Y DRN+P + A +GLSP+LHFG IS LE A + K
Sbjct: 236 FLDSKLSQYNDDRNHPDE-HATTGLSPHLHFGHISVHEMVSSLLEHEGWSADQTSKPNGK 294
Query: 297 ------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREH 349
E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L + D+R H
Sbjct: 295 NHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAKKTLAETRDDERPH 354
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
+YT E+FE A+T D LWNA+Q E+V G+MH +MRM W KKIL WT PEEAL I+LN
Sbjct: 355 LYTLEEFENAETHDELWNAAQRELVETGEMHNYMRMLWGKKILHWTRTPEEALDFMIHLN 414
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYI 464
+KY +DGRDPN Y G +W + G D+ W +RPVFG +RYM ++K + Y+
Sbjct: 415 NKYGLDGRDPNSYCGILW-VLGRTDRAWGPKRPVFGSVRYMTSDSTRKKLKLSKYL 469
>gi|183221779|ref|YP_001839775.1| deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|167780201|gb|ABZ98499.1| Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating
enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 496
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 154/509 (30%), Positives = 249/509 (48%), Gaps = 63/509 (12%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
++ RIRV + + ++ V+YWM +R N A HAV+ A + N + V L
Sbjct: 1 MKSDRIRVCNEKPIQLEKSYVLYWMQAYRRFDANHAFNHAVNLAKELNKELIVYEGLRMD 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDF 128
+ R F+L G+ Q +E +I ++ F ++ ++E AS++VTD
Sbjct: 61 YPWNSERIHQFILEGMIENQTRADE-LEIKYWPFVETPKNLGKGLLKEISENASVVVTDD 119
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P I +K+ ++ + +D ++++P + K +A+ LR I+K L
Sbjct: 120 FPCFIIPEQTEKLAKKIH--CQLLAIDGNSLIP-FSRFAKQASAARILRLWIHKELNR-- 174
Query: 189 IDYPMLE----------------QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES 232
++P + P E+ G +SID I+ + + P G +
Sbjct: 175 -EFPKMNTIIWKNEDLSKLNGKTNPPER-IGLPKSID--GILKLIPFQNIVSPVKG-VKG 229
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR--ALSGLSPYLHFGQISAQR---CA 287
G + A+ +L + FL +L Y T R+ P +P A SGLSPYLHFG I
Sbjct: 230 GRNEALRLL----NDFLKHKLDLYLTKRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAV 285
Query: 288 LEARKARKLCPE------------------AIDTFLEELIVRRELADNFCFY---QPNYD 326
L+ K PE + + FL+ELI R++ + F+ +P
Sbjct: 286 LKHSAKGKWNPERMSHEKPGDREHFYSPSVSANHFLDELITWRDIG--YLFFWKDKPKQI 343
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
+L +W + + + H +D RE++YT EQFE A+T D LWNA+Q E+V GK+H +MRM
Sbjct: 344 NLSHLPDWVKTNFQKHQNDHREYVYTLEQFESAKTHDELWNAAQTELVKTGKIHNYMRML 403
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGK 445
W KK++EW+ EEA I +LN+KY DGR+PN Y G +W G+ D+ W ER VFG
Sbjct: 404 WGKKVIEWSKTYEEAFFILEHLNNKYAYDGRNPNSYTGILWCF-GLFDRPWFPERNVFGN 462
Query: 446 IRYMNYSGCKRKFDVDGYIAYVKRIVGGT 474
+R+M+ K+KF ++ Y+ Y+ + G +
Sbjct: 463 VRFMSSDSTKKKFKLNSYLEYIGELSGKS 491
>gi|442771801|gb|AGC72477.1| deoxyribodipyrimidine photolyase, type II [uncultured bacterium
A1Q1_fos_499]
Length = 485
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 225/472 (47%), Gaps = 47/472 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM +R+ N+AL A+ A + P+ V L + A R F+L G+
Sbjct: 12 VLYWMTAQRRLAWNYALDRAIAWATELGKPLVVLEALRCDYRWANDRIHRFVLEGMAENA 71
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++L+ + +R A+L+VTD P + R D +V
Sbjct: 72 RRATGK-RLLYLPYVEPTPGAGKGLLRALSQRAALIVTDDFPCFFLPRMLDAAARQVE-- 128
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM------LEQPIEKWT 202
+ VD + ++P+ ++ +A R + + LP +L P L+ P K
Sbjct: 129 CRLESVDGNGLLPL-SETDAASPTAYAFRRILQRKLPAFLDSAPAAAPVDRLDLPALKKL 187
Query: 203 GTRQ---SIDW--DSIIAAVLRKGAEVP-----EIGWCESGEDAAMEVLKGSKDGFLTKR 252
++ S DW D+++A + A +P G G AA E FL ++
Sbjct: 188 SVKEGDRSWDWATDTLLAGDEKALAGLPIDHSVAPGLARGGSQAAEERWSS----FLYRK 243
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI----------- 301
L Y +RN P + A SGLS YLHFG +S + + + PE +
Sbjct: 244 LLLYAENRNQPDEDGA-SGLSSYLHFGHLSVHQVLHDLAAVERWSPEDVAAGASGARTGW 302
Query: 302 -------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
+ FL++++ RE+ +FC ++ +YD WA +L HA+D R Y +
Sbjct: 303 WRMSPSAEAFLDQVVTWREVGYHFCHHRADYDRFSSLPPWALATLAKHATDLRSPRYELD 362
Query: 355 QFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEI 414
A+T DPLWNA+Q ++V +G++H ++RM W KK+LEW+ P EA+A I LN++Y +
Sbjct: 363 DLAAARTYDPLWNAAQRQLVADGELHNYLRMLWGKKVLEWSATPAEAVATLIELNNRYAL 422
Query: 415 DGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIA 465
DGR+PN Y G W G D+ W ERP+FG +RYM+ + RK + GY+A
Sbjct: 423 DGRNPNSYSGIFWCF-GRFDRPWGPERPIFGTVRYMSSANTARKLHLKGYLA 473
>gi|315425180|dbj|BAJ46850.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum
subterraneum]
gi|374852319|dbj|BAL55255.1| deoxyribodipyrimidine photo-lyase [uncultured crenarchaeote]
Length = 360
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 182/336 (54%), Gaps = 28/336 (8%)
Query: 140 KICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE 199
K + DSV + E D VVPV AS + E A+T+R K+ L +L P E P++
Sbjct: 33 KTLAKYCDSVKMVEGDV--VVPVKTASTRAEPYARTIRPKLLNKLDNFLETVP--EIPVK 88
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAE--VPEIGWCE---------SGEDAAMEVLKGSKDGF 248
+ S D D I + + E + + G E GED A + L + F
Sbjct: 89 Q-----SSTDLD--IEGLRYETFEHLLKDFGSIEFVEPVKDVVGGEDEAHKRL----ETF 137
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
+ +RL Y +R++P A S LSPYL +G IS + + R+ +++ + EL
Sbjct: 138 VGERLDRYAAERSDP-GSEACSELSPYLRYGMISPVQVLKRVFEYRRRGDVNVESLINEL 196
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
+V RELA N Y P ++ +G EWAR++L HA D+RE +Y+ + E+A T D WNA
Sbjct: 197 VVWRELARNGEVYNPFFEKYEGLPEWARETLSIHAGDRREQVYSMSELERADTHDVYWNA 256
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+Q E++ GK+H +MRMYW KK+LEWT PE A A+YLN+KY +D DPN Y+G W
Sbjct: 257 AQQELLATGKIHNYMRMYWCKKLLEWTDSPETAYRYAVYLNNKYGLDAEDPNSYLGISWC 316
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
G +D+ + E ++GK+R M KRK ++ YI
Sbjct: 317 F-GAYDRPFTESKIYGKVRRMTDQSLKRKKQINNYI 351
>gi|359689450|ref|ZP_09259451.1| deoxyribodipyrimidine photolyase [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418749894|ref|ZP_13306182.1| putative deoxyribodipyrimidine photo-lyase [Leptospira licerasiae
str. MMD4847]
gi|418759280|ref|ZP_13315460.1| putative deoxyribodipyrimidine photo-lyase [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384113771|gb|EIE00036.1| putative deoxyribodipyrimidine photo-lyase [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|404274779|gb|EJZ42097.1| putative deoxyribodipyrimidine photo-lyase [Leptospira licerasiae
str. MMD4847]
Length = 503
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 145/488 (29%), Positives = 240/488 (49%), Gaps = 53/488 (10%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YW+ ++R+ N +L +++ A K P+ + ++ + + R F+L G+
Sbjct: 25 ILYWIRANRRLAWNHSLDYSIHLAKKFKKPLVLFESVMMDYEWSSPRLHQFLLEGICDTA 84
Query: 91 RNIEET-FQILFFLFQGEAE--DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
+ F F+ E + +P +++ AS+++TD P + +KI +
Sbjct: 85 EDASRVGFTYWPFVETKEHSLSEIVPGILKK--ASVVITDDFPCFFLPEHAEKIAEILDC 142
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN-------------KLLPEYLIDYPML 194
+ + VD++++ P+ + Y A+ LR K++ K P+ + L
Sbjct: 143 KLLL--VDSNSITPLASYEKSFGY-ARVLRPKLHDRFVESYMHRSERKPSPKRIPSSDTL 199
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
++P ++G ++ I S + + + V + G +++LK FL + L
Sbjct: 200 KKPDFLFSGKKEEIP--SYLQKMNSQFPNVLPVPGKIGGRKEGLDLLKK----FLKEGLP 253
Query: 255 NYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR---CALEARKARKLCPEA--------- 300
Y +R+ P P S LSPYLHFG IS + LEA P+
Sbjct: 254 YYSEERSEPRPPEKTKSSYLSPYLHFGMISVEEIVTAVLEADPKVNWTPDTLNHSYRGKN 313
Query: 301 ---------IDTFLEELIVRRELADNFCFYQPNY-DSLKGAWEWARKSLKDHASDKREHI 350
I++FL+EL+ REL + +P++ L +WA+ SLK H+ DKRE+I
Sbjct: 314 EGFFHPNPNINSFLDELLTWRELGYLLFYKEPSFRKDLSILPDWAKLSLKVHSVDKREYI 373
Query: 351 YTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLND 410
YTKEQFE A T DP+WNA+Q E+V G + ++RM W KK++EW++ PEEA LN
Sbjct: 374 YTKEQFENAMTHDPIWNAAQKELVLTGTIQNYLRMLWGKKVIEWSSSPEEAFRTLEDLNH 433
Query: 411 KYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
KY DGRDPN Y G +W G D+ W ER VFG IRYM+ +KF + Y+ Y++
Sbjct: 434 KYAYDGRDPNSYTGILWCF-GAFDRPWAPERAVFGNIRYMSSDSTSKKFKLKPYLEYIQS 492
Query: 470 IVGGTKKR 477
+ G ++ R
Sbjct: 493 LEGLSEFR 500
>gi|440716313|ref|ZP_20896824.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436438659|gb|ELP32184.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 479
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 240/488 (49%), Gaps = 57/488 (11%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R E
Sbjct: 1 MIAQRRLHWNFALQHAIDRALEFKKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNAAEAE 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
+ + + + P R A +VTD P + D + +++ + +
Sbjct: 61 SLPVVYYPYVELKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARLEL-- 118
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI---DW 210
+D++ V+P+ A+EK A + R + K + L P L P+++ R ++ D
Sbjct: 119 IDSNGVLPL-RAAEKTYSVAHSYRRFMQKNILPALEQLP-LANPLDR-NSNRPALPCPDG 175
Query: 211 DSII--------AAVLRK--GAEVPEI----GWCESGEDAAMEVLKGSKDG--------- 247
+S+ + +L K A++ ++ G E D ++ + + G
Sbjct: 176 ESMAERRKKLLPSKILSKWPAADLEKLLGQDGLSEIPIDHSVRPSQATPGGTAEASRRWQ 235
Query: 248 -FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--------ALEARKARKL-- 296
FL K+L Y DRN+P A +GLSP+LHFG ISA A + K
Sbjct: 236 EFLNKKLSRYNDDRNHP-DEHATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQTSKPNG 294
Query: 297 -------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKRE 348
E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L + D+R
Sbjct: 295 KNHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERP 354
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYL 408
H+YT +FE A+T D +WNA+Q E+V G+MH +MRM W KKIL W PEEAL I+L
Sbjct: 355 HLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWAQTPEEALEFMIHL 414
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
N+KY +DGRDPN Y G +W + G D+ W +RPVFG +RYM ++K + Y+
Sbjct: 415 NNKYGLDGRDPNSYCGILW-VLGRTDRAWGPKRPVFGSVRYMTSDSTRKKLKL---TKYL 470
Query: 468 KRIVGGTK 475
+R G K
Sbjct: 471 QRFAGSNK 478
>gi|1197525|gb|AAC43723.1| photolyase [Myxococcus xanthus DZF1]
gi|1589149|prf||2210323A photolyase
Length = 400
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 182/336 (54%), Gaps = 39/336 (11%)
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ-- 206
V + VDA VVP+ + + + A TLR K+ KL PEYL D + + ++ R+
Sbjct: 62 VPLFAVDASCVVPMQRIATR-QIGAYTLRPKLKKLWPEYL-DRAVPNRAVKAAAAGRKLE 119
Query: 207 ----------------SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+ D+D +A + +G G A ++ L+ F+
Sbjct: 120 PDFATSDARESRESLDAFDFDHSVAPIQERG-----------GRKAGLDALQA----FVH 164
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+RL+ Y RN+P R S LSP+ H+G + A A A +AR ++ FLEEL+V
Sbjct: 165 QRLEGYDEGRNDPGLARQ-SNLSPFFHWGNLFAGEAARAAIRARGAQDASVQGFLEELLV 223
Query: 311 RRELADNFCFYQPNYDSLKGAW--EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
RREL N+CF+ P L A WA+++L H D REH Y+ +Q E A+TAD LWNA
Sbjct: 224 RRELGFNYCFHTPGPQQLSVASLPPWAKETLTRHQKDAREHRYSLKQLETARTADGLWNA 283
Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+Q E+V G++H ++RM W KKILEWT P+EAL +LNDKY +DGRDP MW
Sbjct: 284 AQRELVERGRIHNYLRMLWGKKILEWTPSPQEALQRIAFLNDKYAVDGRDPASVANFMW- 342
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+ G+HD+ ++ER V GK+R M+ ++++ Y+
Sbjct: 343 VLGLHDRPFQERQVLGKVRPMSSLRTAARYNLAPYL 378
>gi|168702415|ref|ZP_02734692.1| deoxyribodipyrimidine photolyase [Gemmata obscuriglobus UQM 2246]
Length = 524
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 161/535 (30%), Positives = 245/535 (45%), Gaps = 87/535 (16%)
Query: 15 RIRVLKQGSLDKKRGPVVYW--MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
RIR + V+YW MFR R+ N AL HA+ A ++ P+ V L +
Sbjct: 5 RIRFANAARPNPNGRYVLYWPQMFR--RLHSNHALDHALKLAGEHKKPLVVYEGLKLNYP 62
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
A AR F+L+G+R R ++ + ++ F +D V A +VTD P
Sbjct: 63 WANARHHTFILQGMRDNARAAQK-LGLAYWPFVETPDDPGRGLVARLSKDAVCVVTDDYP 121
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY--- 187
+ + +++ + + VD +VVP+ + +A LR +I+KL E
Sbjct: 122 AYIVPAHNRALADKIDVPLVL--VDGSSVVPLSRLGAPVA-AAAHLRPRIHKLFAEAWRH 178
Query: 188 ----LIDYP-----MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
D P L P E W T Q I + A L VP + G A
Sbjct: 179 RAKNAPDVPKVARSTLAPPFEPWDAT-QDI---AKFVAGLPIDQSVPAVAGATGGAAAGT 234
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSP--YLHFGQISAQRCAL----EARK 292
L + F++ +L Y +RN P P + + YLH+G IS ++ ++
Sbjct: 235 AAL----EAFVSDKLPRYSEERNAPDDPAKSAASALSAYLHYGHISIEQVTQAVLGDSWS 290
Query: 293 ARKLCPEA------------IDTFLEELIVRRELADNFCFY------------------- 321
+++ P+ ++ FL+E I R++ ++ F
Sbjct: 291 EQEINPKTRNKDDFFCRDPNVNDFLDEAITWRDVGYHWHFRRNLECDNRDAELKNVSWSG 350
Query: 322 -------QPNYDSLKGAW-----------EWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
Q N++++ A EWAR SLK HA D REHIY+ +FE A+T D
Sbjct: 351 ASSSAVPQFNFETMDFASGGELTLDVVLPEWARASLKKHAGDPREHIYSLGEFEGARTHD 410
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
PLWNA+Q E++ G++H ++RM WAKK+LEW+ P +A +LN+KY +DGRDPN Y
Sbjct: 411 PLWNAAQTELICTGRIHNYLRMLWAKKVLEWSATPADAYRTLEHLNNKYALDGRDPNSYT 470
Query: 424 GCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
G W G+ D+ W ERPVFG +RYM+ + +KFD+DGY YV I +R
Sbjct: 471 GIHWCF-GLFDRPWPPERPVFGSLRYMSSANTAKKFDLDGYYDYVAGISQSAPRR 524
>gi|253761750|ref|XP_002489250.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
gi|241947110|gb|EES20255.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
Length = 1445
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 153/253 (60%), Gaps = 16/253 (6%)
Query: 6 PPSTA--VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
PP++ V P R+R+L G GPVVYWM RDQR+ DNWAL+HA + A + +
Sbjct: 2 PPASPNLVHPSRVRILHPGG-GHMPGPVVYWMLRDQRLADNWALLHAAELAAASAPAAPL 60
Query: 64 A--FNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A F LF + LGA RQLGF+LRGLR L + F L G AE +P VR
Sbjct: 61 AIAFTLFPRPFLLGAHLRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE--VPALVRRL 118
Query: 120 GASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GAS LVTDFSPLR +R D + + R + + +H+VDAHNVVPVWVA+ KLEYSAKT
Sbjct: 119 GASALVTDFSPLRPVREAFDAVVHELLRDAADMAVHQVDAHNVVPVWVATGKLEYSAKTF 178
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R K++K++ EYL++YP L + +DWD++I ++ + VPEI WCE GE A
Sbjct: 179 RSKVSKVMDEYLVEYPELPGWTPWCMEQPKDVDWDALINSIFSEAENVPEIDWCEPGEAA 238
Query: 237 AMEVLKGSKDGFL 249
AME S D FL
Sbjct: 239 AME----SVDAFL 247
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 41/44 (93%)
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH 342
E++D FLEELI+RRELADNFC+YQPNYDSL GAWEWARK+L DH
Sbjct: 241 ESVDAFLEELIIRRELADNFCYYQPNYDSLAGAWEWARKTLMDH 284
>gi|383455823|ref|YP_005369812.1| deoxyribodipyrimidine photolyase [Corallococcus coralloides DSM
2259]
gi|380733831|gb|AFE09833.1| deoxyribodipyrimidine photolyase [Corallococcus coralloides DSM
2259]
Length = 470
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 224/469 (47%), Gaps = 29/469 (6%)
Query: 10 AVQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
V R++ + + +R V+YW + R +N AL A+ N +PV V +
Sbjct: 11 GVDSARVQAVNEAPFPPGQRDFVLYWCMVNHRWEENHALDAAIALGNHLGLPVVVYQAIR 70
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVT 126
+ A R + L G+ + + + +++ P G A+ +V+
Sbjct: 71 PDYPYASERLHAWALEGMADMAKGCTARGLPYWLELPRTKKEHKPRLA-SLGRRAAAVVS 129
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D P I + V + VDA VVP+ + A LR K+ KL PE
Sbjct: 130 DLFPTYIIPGHLRGAAKALR--VPLIAVDASCVVPMQRIPAA-QVGAYALRPKLRKLWPE 186
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWC------ESGEDAAMEV 240
YL L + +G + D++ A R + + G A ++
Sbjct: 187 YLER--TLPRRKVHVSGAKLQPDFELSDAVQARAALDTFALDHSVKPLSERGGRKAGLKA 244
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
L D FL +RL+ Y T RN+P + S LSP+ H+G + A A A+ A
Sbjct: 245 L----DAFLDERLEGYDTGRNDPGLGQQ-SNLSPWFHWGNLFPGEAARAAIAAKGKDHPA 299
Query: 301 IDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+ +F+EEL+VRREL N+CF+ P + DSL WAR++L H D R H+Y+ E+
Sbjct: 300 VQSFVEELLVRRELGFNYCFHTPGPKQLSVDSLP---PWARETLSRHRKDPRPHLYSFEE 356
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEID 415
++ +T D LWNASQ E+ G++H ++RM W KKILEW+ PEEALA LND Y +D
Sbjct: 357 LDQGRTQDALWNASQRELRERGRIHNYLRMLWGKKILEWSPTPEEALARIARLNDTYAVD 416
Query: 416 GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
GRDP MW + G+HD+ ++ER V GK+R M+ KFD+ Y+
Sbjct: 417 GRDPASVSNFMW-VLGLHDRPFQERAVIGKVRPMSSLRTAEKFDLGPYL 464
>gi|402471527|gb|EJW05244.1| deoxyribodipyrimidine photolyase [Edhazardia aedis USNM 41457]
Length = 431
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 217/436 (49%), Gaps = 30/436 (6%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+KQ + + R V+Y M RD R++DN ++I + + N + N + RQ
Sbjct: 5 IKQSNSIQHRKNVLYIMKRDFRIQDNHSVILGYEMSEHNKSEFYILINPNEYNKNLNTRQ 64
Query: 79 LGFMLRGLRLLQRNIEE-TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE---I 134
FM +G+ + E ++F + E V + ++T+ SPLRE
Sbjct: 65 KVFMRQGINEILNECENLNIHVIFNMLFNEV-------VYKYQIDCIITEESPLREAKLF 117
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ C + + + ++ D+HN+VP V K SAK ++ + K P YL ++P+L
Sbjct: 118 HSILNDFC--IDNRIALYFCDSHNIVPS-VCLNKYIKSAKVVKENLYKYWPIYLSEFPVL 174
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT-KRL 253
++ ++ +I + +V +I C + EV K ++ F K+L
Sbjct: 175 KR--HRYNKLVNNIPF------TYTDINDVSDIDVCGGYTNGMKEVNKFIEEKFHNFKKL 226
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+N D NN +S L P++ GQI +Q AL K + E FL E+ + +E
Sbjct: 227 RN-QADFNN------VSNLQPWILSGQIGSQSLALYICKKYPIDDENTQDFLNEIFIWKE 279
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
A++FC + NYD+LKGA WA ++L H +DKR I T++ EK +T + WNA E+
Sbjct: 280 TAEHFCRNECNYDNLKGASTWAVETLDAHKNDKRSEICTEKNLEKLKTKNIEWNAGMNEL 339
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
G+MH ++ +YW K +L T PEEAL ++ L KY ++ P + M+SICGV
Sbjct: 340 KSTGRMHLYVFIYWCKHLLFMTKTPEEALKLSFSLYGKYSLEANYPYSILWIMYSICGVM 399
Query: 434 DQGWKERPVFGKIRYM 449
DQG+ ER V GKIRY+
Sbjct: 400 DQGFGERNVIGKIRYI 415
>gi|421114254|ref|ZP_15574679.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. JET]
gi|410800416|gb|EKS06609.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. JET]
Length = 503
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 243/510 (47%), Gaps = 67/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSTARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + ++ +I + + + A SL+VTD P
Sbjct: 69 SPRLHRFILEGMAS-NVNTAEKLGLTYRALVETSDGSIADVMEKIAAKASLVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPEAW-KFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+ L +W RK+L H +D R +YTKEQ E A+T D +WNA+Q E+V +G MH ++
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAIWNAAQKELVLSGSMHNYL 414
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPV 442
RM W KK++EWT A I LN+KY DGRDPN Y G +W G+ D+ W ER V
Sbjct: 415 RMLWGKKVIEWTQDYGTAFEILEDLNNKYAYDGRDPNSYTGILWCF-GLFDRPWFPERDV 473
Query: 443 FGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
FG IRYM+ K+KF + Y YV+ + G
Sbjct: 474 FGTIRYMSSDSTKKKFKLGSYFDYVQSLEG 503
>gi|283779092|ref|YP_003369847.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
gi|283437545|gb|ADB15987.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
Length = 824
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 148/485 (30%), Positives = 236/485 (48%), Gaps = 44/485 (9%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+RV+ + V+YW+ R +N AL A++ AN+ +P+ V L +++ A
Sbjct: 23 RVRVVTDRPIASSGKLVLYWLRTAMRAHENPALDLAIEFANQLALPLVVYQGLSEKYPYA 82
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
RQ F++ G+ L + E + + +L E ++ ++++ A ++++T+ P+
Sbjct: 83 SDRQHRFVIEGMINLASEMRE--RGIHYLPHIERGEHREPYLQKLAAQAAVVITEEMPVD 140
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLE--YSAKTLRGKI---NKLLP-- 185
+RR + V + VD V P+ + + ++ + G N LP
Sbjct: 141 PLRRWTSLASRHTTGPV--YTVDTACVWPMPRMPQSYDRAFAFRDAAGDYYDKNLTLPWD 198
Query: 186 -EYLIDYPMLE-QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGED--AAMEVL 241
E L P E IE + Q+I IIAA CE AA E
Sbjct: 199 EEQLTSRPTPELADIEPTPISPQNIA--EIIAA-------------CEIDHTLAAAAETR 243
Query: 242 KGSKDG------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
GS G F L+NY RN+PL P S +S YLH+G +S R A R+A
Sbjct: 244 GGSVAGYERWNQFRQTGLRNYAARRNDPLHP-TTSRMSAYLHYGMVSPLRIA---REASA 299
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+ +L+EL+V RELA N+C++ D L WA+++L HA D+R +IY+ EQ
Sbjct: 300 QGGAGAEKYLDELLVWRELAYNYCYFHRAIDRLSTLPRWAQETLAQHAGDRRPNIYSWEQ 359
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEID 415
+ QT D LWN +Q ++ +G++H +RM W K++L+WT P +ALA+AI LN +Y +D
Sbjct: 360 LARGQTDDELWNLTQQSLLRHGELHNNLRMTWGKRLLDWTASPHDALAMAIDLNHRYALD 419
Query: 416 GRDPNGYVGCMWSICGVHDQGWK-ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGT 474
GRDP Y G +W G+ D+ + E P+ G IR + + + D+ Y V R +
Sbjct: 420 GRDPASYGGLLWCF-GLFDRPFHPEEPIRGTIRSRSTAEHAARLDLSAYAKLVGRPIFAR 478
Query: 475 KKRRA 479
R A
Sbjct: 479 TPRVA 483
>gi|302343405|ref|YP_003807934.1| deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075]
gi|301640018|gb|ADK85340.1| Deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075]
Length = 492
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 147/486 (30%), Positives = 226/486 (46%), Gaps = 43/486 (8%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L Q LD V+YWM +R N+ L A A + P+ + L + A
Sbjct: 8 RIRPLNQRPLDPAGDYVLYWMCAQRRTGWNFGLQRAAWLAGELKRPLVILEALRLDYPHA 67
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQ---GEAEDNIPNFVRECGASLLVTDFSPL 131
R F+L+G+ + + + + G + + + A +V D P
Sbjct: 68 SERLHCFILQGMAANAAALAGRGALYYPYVEPARGAGKGLLAALAQR--ACAVVADDYPT 125
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
I + + VD+ ++P+ AS+ +A R + K LPE+L
Sbjct: 126 FFI--PAMLAAAAAQCAARLEAVDSCGLLPL-AASDHAFPTAHAFRRFLQKNLPEHLAQP 182
Query: 192 PMLEQP---------IEKWTGTRQSIDWDSIIA--AVLRKGAEVPEIGWCESGEDAAMEV 240
P+ + + +W R W + +A L G + G
Sbjct: 183 PVADPLAGLPAPPPILPRWIIERWPPAWSADLARPQALIAGLAIDHAVGPVVGRVGGAAA 242
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA---------------QR 285
+ FL + L Y RN P + SGLSPYLHFG I+A QR
Sbjct: 243 AGATLARFLGRGLALYDQLRNQPAEDVG-SGLSPYLHFGHIAAHQVFAALADVEGWSPQR 301
Query: 286 CALEARKARK----LCPEAIDTFLEELIVRRELADNFCFYQPNYDS-LKGAWEWARKSLK 340
A+ AR+ L P A + F ++ I REL NFC ++P + L+ +WA ++L
Sbjct: 302 VGGPAKGARQGWWGLSPTA-EAFADQFITWRELGYNFCHHRPGQEGKLESLPDWAGQTLA 360
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEE 400
HA+D R ++Y E+ E A+T +WNA+Q ++ G++H ++RM W KKIL WT P +
Sbjct: 361 AHAADPRPYVYDLERLETARTHGAIWNAAQNQLRQEGRIHNYLRMLWGKKILHWTETPAQ 420
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFD 459
ALAI ++LND++ +DGRDPN + G MW + G +D+ W ERPVFGK+RYM+ + RK
Sbjct: 421 ALAIMVHLNDRWALDGRDPNSHSGIMWCL-GRYDRPWGPERPVFGKVRYMSMANTARKLR 479
Query: 460 VDGYIA 465
+ Y+A
Sbjct: 480 LGPYLA 485
>gi|187234364|gb|ACD01434.1| DNA photolyase II [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|195976055|gb|ACG63559.1| DNA photolyase II [Plusia acuta nucleopolyhedrovirus]
Length = 243
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 145/249 (58%), Gaps = 16/249 (6%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT-----GTRQS 207
+VDAHNVVP WVAS K EYSA +R K+N L YL +P + + + + T
Sbjct: 1 QVDAHNVVPCWVASNKQEYSAMFMRKKLNSKLECYLKPFPPVVRHEYRSSVVLDPCTTTH 60
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++A+ V + W E G +A+ VL F+ L Y RNNP+ +
Sbjct: 61 IDWQQLLAS-RDADVSVGPVDWIEPGYISALNVLAR----FIRCNLLKYKMSRNNPVL-K 114
Query: 268 ALSGLSPYLHFGQISAQRC-----ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
S +SP+ HFGQIS QR +L+ K I+ ++EE VRRELADNFCFY
Sbjct: 115 TQSNMSPFYHFGQISVQRVMLHLNSLKINKNDSGIDSNINDYIEECFVRRELADNFCFYN 174
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
NYD+ GA WA+++L H SD R++IY+ QFE QT D LWNA+Q ++ GK+HG+
Sbjct: 175 SNYDTFLGAPNWAKETLVIHKSDSRQYIYSLLQFEHNQTHDELWNAAQRQLRNEGKIHGY 234
Query: 383 MRMYWAKKI 391
+RMYWAKKI
Sbjct: 235 LRMYWAKKI 243
>gi|418744279|ref|ZP_13300635.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. CBC379]
gi|418753809|ref|ZP_13310049.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. MOR084]
gi|409965852|gb|EKO33709.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. MOR084]
gi|410794730|gb|EKR92630.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. CBC379]
Length = 503
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 242/510 (47%), Gaps = 67/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A SL+VTD P
Sbjct: 69 SPRLHRFILEGMAS-NVNTAEKLGLTYRALVETPDGSIADVMEKIAAKASLVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPEAW-KFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+ L +W RK+L H +D R +YTKEQ E A+T D +WNA+Q E+V +G MH ++
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAIWNAAQKELVLSGSMHNYL 414
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPV 442
RM W KK++EWT A I LN+KY DGRDPN Y G +W G+ D+ W ER V
Sbjct: 415 RMLWGKKVIEWTQDYGTAFEILEDLNNKYAYDGRDPNSYTGILWCF-GLFDRPWFPERDV 473
Query: 443 FGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
FG IRYM+ K+KF + Y YV+ + G
Sbjct: 474 FGTIRYMSSDSTKKKFKLGSYFDYVQSLEG 503
>gi|410451480|ref|ZP_11305486.1| putative deoxyribodipyrimidine photo-lyase [Leptospira sp. Fiocruz
LV3954]
gi|410014696|gb|EKO76822.1| putative deoxyribodipyrimidine photo-lyase [Leptospira sp. Fiocruz
LV3954]
Length = 503
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 149/510 (29%), Positives = 243/510 (47%), Gaps = 67/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A +L+VTD P
Sbjct: 69 SPRLHRFILEGMSS-NVNTAEKLGLTYRALVETPDGSIADVMEKIAAKAALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPEAW-KFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + +P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKKPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+ L +W RK+L H +D R +YTKEQ E A+T D +WNA+Q E+V +G MH ++
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAIWNAAQKELVLSGSMHNYL 414
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPV 442
RM W KK++EWT A I LN+KY DGRDPN Y G +W G+ D+ W ER V
Sbjct: 415 RMLWGKKVIEWTQDYGTAFEILEDLNNKYAYDGRDPNSYTGILWCF-GLFDRPWFPERDV 473
Query: 443 FGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
FG IRYM+ K+KF + Y YV+ + G
Sbjct: 474 FGTIRYMSSDSTKKKFKLGSYFDYVQSLEG 503
>gi|408792497|ref|ZP_11204107.1| putative deoxyribodipyrimidine photo-lyase [Leptospira meyeri
serovar Hardjo str. Went 5]
gi|408463907|gb|EKJ87632.1| putative deoxyribodipyrimidine photo-lyase [Leptospira meyeri
serovar Hardjo str. Went 5]
Length = 472
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 143/476 (30%), Positives = 233/476 (48%), Gaps = 53/476 (11%)
Query: 39 QRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQ 98
+R N + AV A + + V L + + R F++ G+ Q +E
Sbjct: 5 RRFDSNHSFSFAVHLAKEQKKELIVYEGLRSDYPWSSERIHKFIIEGMYDNQTRADE-LG 63
Query: 99 ILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156
I ++ F ++ ++E A+ +VTD P I K+ +++ + VD+
Sbjct: 64 INYWPFIESKKNPARGILKELSKNAAAIVTDDFPCFIIPEQTKKLAEKIN--CPLFAVDS 121
Query: 157 HNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP---IEKWTGTRQSI----- 208
++++P + EK +A+ LR I+K E+L P P E G Q+
Sbjct: 122 NSLIP-FSRFEKEASAARILRIWIHK---EFLKGIPERANPNWKKEDLEGLHQNSKPPKG 177
Query: 209 -----DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ ++ + + K +P + G + A+++LK F++K+L +Y T R+ P
Sbjct: 178 FGLPKELNTFLNSFDFKNNVIPAKD-VKGGRNEALKILKT----FVSKKLMDYATGRSQP 232
Query: 264 LKPR--ALSGLSPYLHFGQISAQ---RCALEARKARKLCPE------------------A 300
P A SGLSPYLHFG I + + L+ K PE +
Sbjct: 233 NPPEFTATSGLSPYLHFGHIGIEEIFQSVLDTSSKGKWNPERMSHQKPGDREHFYSESTS 292
Query: 301 IDTFLEELIVRRELADNFCFYQPNYD-SLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+ FL+ELI R++ F + + + +L +W + + K H SD RE++Y+ EQFE A
Sbjct: 293 ANHFLDELITWRDIGYLFFWKSKSQNINLDNLPDWVKTNFKKHKSDTREYLYSLEQFESA 352
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
+T D LWNA+Q E+V G+MH +MRM W KK++EWT EEA I +LN+KY DGR+P
Sbjct: 353 KTHDELWNAAQTELVQTGRMHNYMRMLWGKKVIEWTKSYEEAFEILEHLNNKYAYDGRNP 412
Query: 420 NGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGT 474
N Y G +W G+ D+ W ER VFG +R+M+ K+KF + Y+ Y+ + G +
Sbjct: 413 NSYTGILWCF-GLFDRPWFPERNVFGNVRFMSSDSTKKKFKMKSYLEYIGELSGNS 467
>gi|359686417|ref|ZP_09256418.1| deoxyribodipyrimidine photolyase [Leptospira santarosai str.
2000030832]
Length = 503
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 149/510 (29%), Positives = 242/510 (47%), Gaps = 67/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A +L+VTD P
Sbjct: 69 SPRLHRFILEGMSS-NVNTAEKLGLTYRALVETPDGSIADVMEKIAAKAALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPEAW-KFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+ L +W RK+L H +D R +YTKEQ E A+T D +WNA+Q E+V +G MH ++
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAIWNAAQKELVLSGSMHNYL 414
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPV 442
RM W KK++EWT A I LN+KY DGRDPN Y G +W G+ D+ W ER V
Sbjct: 415 RMLWGKKVIEWTQDYGTAFEILEDLNNKYAYDGRDPNSYTGILWCF-GLFDRPWFPERDV 473
Query: 443 FGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
FG IRYM+ K+KF + Y YV+ + G
Sbjct: 474 FGTIRYMSSDSTKKKFKLGSYFDYVQSLEG 503
>gi|422005434|ref|ZP_16352619.1| deoxyribodipyrimidine photolyase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417255878|gb|EKT85328.1| deoxyribodipyrimidine photolyase [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 503
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 149/510 (29%), Positives = 242/510 (47%), Gaps = 67/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A +L+VTD P
Sbjct: 69 SPRLHRFILEGMAS-NVNTAEKLGLTYRTLVETPDGSIADVMEKIAAKAALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPEAW-KFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+ L +W RK+L H +D R +YTKEQ E A+T D +WNA+Q E+V +G MH ++
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAIWNAAQKELVLSGSMHNYL 414
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPV 442
RM W KK++EWT A I LN+KY DGRDPN Y G +W G+ D+ W ER V
Sbjct: 415 RMLWGKKVIEWTQDYGTAFEILEDLNNKYAYDGRDPNSYTGILWCF-GLFDRPWFPERDV 473
Query: 443 FGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
FG IRYM+ K+KF + Y YV+ + G
Sbjct: 474 FGTIRYMSSDSTKKKFKLGSYFDYVQSLEG 503
>gi|456874649|gb|EMF89921.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. ST188]
Length = 503
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 241/510 (47%), Gaps = 67/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A SL+VTD P
Sbjct: 69 SPRLHRFILEGMAS-NVNTAEKLGLTYRALVETPDGSIADVMEKIAAKASLVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPEAW-KFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLKGS------ 244
+P + + +S W L K ++ P +I WC ED ++ K S
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 245 -----------KDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
++G FL L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGEREEGLKLLKRFLKHGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+ L +W RK+L H +D R +YTKEQ E A+T D +WNA+Q E+V +G MH ++
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAIWNAAQKELVLSGSMHNYL 414
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPV 442
RM W KK++EWT A I LN+KY DGRDPN Y G +W G+ D+ W ER V
Sbjct: 415 RMLWGKKVIEWTRDYGTAFEILEDLNNKYAYDGRDPNSYTGILWCF-GLFDRPWFPERDV 473
Query: 443 FGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
FG IRYM+ K+KF + Y YV+ + G
Sbjct: 474 FGTIRYMSSDSTKKKFKLGSYFDYVQSLEG 503
>gi|153005863|ref|YP_001380188.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5]
gi|152029436|gb|ABS27204.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5]
Length = 493
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 225/494 (45%), Gaps = 60/494 (12%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV--AFNLFDQFL 72
RIR + ++R V+YWM +RVR N AL A+ A + PVA+ A + D +
Sbjct: 12 RIRAANDAPVRRERAYVLYWMTAARRVRFNPALERAIALARELERPVAILEALRVGDPY- 70
Query: 73 GAKARQLGFMLRGL-----RLLQRNIEETFQILFFLFQGEAEDNIPNFV-RECGASLLVT 126
A R F+L+G+ RL R + + GE E + R C +VT
Sbjct: 71 -ASDRLHAFVLQGMAENARRLAGRVLHHPY---VERAPGEGEGLLEALAARACA---VVT 123
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D P + R +V V + VD VVP +A + +A R + +LLP
Sbjct: 124 DDLPTFFLPRQCAAAAAQVD--VRVEAVDGSCVVPFRLAGKDFP-TAHAYRRHLQRLLPA 180
Query: 187 YLIDYPMLEQP---------------IEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWC 230
+L P + ++W T ++ + + A L VP
Sbjct: 181 WLDRLPSADPLARAALPPPPALSRGIAQRWPAVTPDALARPARLTASLPIDHGVPPAPLR 240
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA---QRCA 287
A + + + +L + L Y R++P + SGLSP+LHFG +S+ R
Sbjct: 241 GGARAAGVRLAR-----WLEQGLPRYADARSDPDEEGVASGLSPWLHFGHVSSFEVVRAV 295
Query: 288 LE---------------ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW 332
L AR A + FL++L+ REL C ++ ++
Sbjct: 296 LRREGWTPALLSPGVTGARSGWWGVSAAAEAFLDQLVTWRELGFATCAHRADHREYGSLP 355
Query: 333 EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKIL 392
WAR +L+ HA D R H Y ++ + A+T DPLWNA+Q ++ G +H +RM W KKIL
Sbjct: 356 AWARATLEAHAGDPRPHAYDRDTLDAARTHDPLWNAAQRQLRVEGVIHNALRMLWGKKIL 415
Query: 393 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNY 451
EW+ P AL A+ LND++ +DGRDPN G W + G +D+ W ERP+FG +RYM+
Sbjct: 416 EWSPSPRAALEAALELNDRWALDGRDPNSVSGVFWCL-GRYDRPWGPERPIFGTVRYMSS 474
Query: 452 SGCKRKFDVDGYIA 465
RK+ V Y+A
Sbjct: 475 QNSARKWAVRRYLA 488
>gi|255671724|gb|ACU26482.1| deoxyribodipyrimidine photolyase [uncultured bacterium
HF186_25m_13D19]
Length = 459
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 140/463 (30%), Positives = 216/463 (46%), Gaps = 39/463 (8%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M +R DN+ L HA+ A VP+ V L + A R F+L G+R +
Sbjct: 1 MVSARRTTDNFGLQHALYHAETLGVPLVVFEPLRVGYRWASERFHAFVLEGMRDNAEAFD 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGAS---LLVTDFSPLREIRRCKDKICNRVSDSVTI 151
+ + + E E + + E A+ ++V+D P + R DK R+ V +
Sbjct: 61 GVAGVTYLPYV-EPEAGAGSGLLEALAAQACMVVSDHFPCFFVPRMVDKAAKRLDVQVDV 119
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD 211
VD++ ++P++ A + +A + R ++K + E+L + P E + D
Sbjct: 120 --VDSNGILPLFAAPREFT-TAHSFRRHVHKNVLEHLAEMPEAEPLASAELPPAPARDAL 176
Query: 212 SII--AAVLRKGAEVPEIGWCESGEDAAMEVLKGSK-------DGFLTKRLKNYPTDRNN 262
+I AA +GA + +G + D FL ++L Y N
Sbjct: 177 NIAPWAACTGEGALNVTLSALPIDHSVTPVSTRGGRQEAWRRLDAFLGRQLNAY--GERN 234
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP------------------EAIDTF 304
++ +GLSP+LHFG I A E + + P E ++F
Sbjct: 235 QVERDIGTGLSPHLHFGHIGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAESF 294
Query: 305 LEELIVRRELADNFCFYQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
L++++ REL FC + +YD + WA +L+ HA D+R +Y E + +T D
Sbjct: 295 LDQVLTWRELGYTFCHVRWRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALDAGKTHD 354
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
LWNA+Q ++ G +H ++RM WAKKILEWT P AL I LN++Y +DGRDPN Y
Sbjct: 355 MLWNAAQRQLRREGMIHNYLRMLWAKKILEWTEHPRVALDTLIELNNRYALDGRDPNSYS 414
Query: 424 GCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G W + G D+ W ERP+FGKIRYM+ RK V YIA
Sbjct: 415 GIFWCL-GRFDRAWGPERPIFGKIRYMSSENTARKVRVGAYIA 456
>gi|86159449|ref|YP_466234.1| deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775960|gb|ABC82797.1| Deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 490
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 148/490 (30%), Positives = 212/490 (43%), Gaps = 55/490 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L L +R V++WM +R R N AL A + PV V L + A
Sbjct: 11 RIRALNAAPLRPERAFVLHWMTSARRTRSNPALERAAELGRALGRPVLVLEPLRCGYPHA 70
Query: 75 KARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129
R F+L G+R L R + + GE D + + + +++ DF
Sbjct: 71 SDRLHAFLLEGMRDNAAALAGRAL---YHPWVERRAGEG-DGLLDALAARACAVIADDF- 125
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL- 188
P R+ V + VDA VVP +A + +A R + + LP +L
Sbjct: 126 PTGFPAAAIGAAAARLD--VRLEAVDASCVVPFRLAGKDFP-TAHAYRRHLQRALPAWLD 182
Query: 189 ---IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA------------EVPEIGWCESG 233
+ P+ P I A VP G G
Sbjct: 183 RLPAEDPLAGVPPPGGASVPAEIRRRWPAARAAELARPAALAAALPIDHRVPPAG--RGG 240
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
AA L FL L Y RN P + R SGLSP+LHFG + + +
Sbjct: 241 SVAARRRLSA----FLRDGLDAYAERRNAPDEARGASGLSPWLHFGHLGSFEILRAVLRR 296
Query: 294 RKLCPEAI------------------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWA 335
P + + FL++L+ RELA C + P + + WA
Sbjct: 297 EGWTPPPVAAPARGARAGWWGLSASAEAFLDQLLTWRELAFVTCAHVPEHRAYASLPAWA 356
Query: 336 RKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWT 395
R +L HA+D R +Y + E A+T DPLWNA+Q +++ G +HG++RM W KKILEW+
Sbjct: 357 RATLARHAADPRPAVYARAALEAAETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILEWS 416
Query: 396 TGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGC 454
PEEA A + LND++ +DGRDPN G W + G +D+ W ERPVFG +RYM+ +
Sbjct: 417 ATPEEAHATLLELNDRHALDGRDPNSVAGIAWCL-GRYDRPWGPERPVFGTVRYMSSANT 475
Query: 455 KRKFDVDGYI 464
RK+ V Y+
Sbjct: 476 ARKWPVRRYL 485
>gi|410939373|ref|ZP_11371200.1| FAD binding domain of DNA photolyase [Leptospira noguchii str.
2006001870]
gi|410785241|gb|EKR74205.1| FAD binding domain of DNA photolyase [Leptospira noguchii str.
2006001870]
Length = 516
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 149/524 (28%), Positives = 243/524 (46%), Gaps = 75/524 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELDPKPILEEKPYILYWMSMARRLAWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEE------TFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
R F+L G+ N++E T++ + E+ E A+L++TD
Sbjct: 69 SPRLHKFILDGM---SSNVKEAKKLGLTYRAFVETHENPIEETFEKISSE--AALVITDD 123
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + ++ ++ + I VD+++++P+ E +A+ LR +++KL PE +
Sbjct: 124 YPAYIVPELLEQFSKKLKCKLLI--VDSNSIIPLTFYGE-FASAARILRPRVHKLFPE-V 179
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E GED ++ K
Sbjct: 180 WKFRSFHKPDKPFREKENS--W-------LEKNPNSPLKKIIWFEGGEDQISKICKNCNF 230
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL + L Y R+NP P S LSPYLHFG I
Sbjct: 231 NFQNILPVPGKKGGREEGIRLLQKFLKRGLSGYAELRSNPRPPEESYSSFLSPYLHFGHI 290
Query: 282 SAQRCALEA-----------------RKARK----LCPEAIDTFLEELIVRRELADNFCF 320
S + E K RK +++FL+ELI R++ +
Sbjct: 291 SQEEIVSEVLNWNLDGPWTPGIIIPENKNRKEGYFHSDPNVNSFLDELITWRDVGFLMFW 350
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V G M
Sbjct: 351 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLESSKTHDTIWNAAQKELVLTGSM 410
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-K 438
H ++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W
Sbjct: 411 HNYLRMLWGKKVIEWSPDYQTAFKILEEFNNKYAYDGRDPNSYTGILWCF-GLFDRPWFP 469
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
ER VFG IRYM+ K+KF + Y+ YV+ + K + L
Sbjct: 470 ERDVFGTIRYMSSDSTKKKFKLQTYLDYVQSLEEKNDKSNSQLL 513
>gi|149924015|ref|ZP_01912399.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
gi|149815144|gb|EDM74696.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
Length = 229
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 131/223 (58%), Gaps = 29/223 (13%)
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCP--------------------EAIDTFLEE 307
A SGLSP+LHFGQ+ A + +A P E+ + FL+E
Sbjct: 2 ASSGLSPWLHFGQVGAHQVLHAVLRAEDWSPALLGEAKALRGSRRGWWGLSESAEGFLDE 61
Query: 308 LIVRRELADNFCFYQPN----YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
L++ REL FC++ P+ Y SL EWAR +L+DH D R YT Q + AQT D
Sbjct: 62 LVIWRELGQVFCWHHPDAYLRYGSLP---EWARTTLEDHREDDRPSPYTLAQLDGAQTHD 118
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
+WNA+Q ++V+ G+MH ++RM W KKILEW+ E+A+ I+LNDKY +DGRDPN Y
Sbjct: 119 EIWNAAQRQLVHEGRMHNYLRMLWGKKILEWSADAEQAIERMIHLNDKYALDGRDPNSYS 178
Query: 424 GCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIA 465
G W +CG D+ W ERP+FGKIRYM+ +RK + Y+A
Sbjct: 179 GIFW-VCGRFDRAWGPERPIFGKIRYMSSDNTRRKLKMSQYLA 220
>gi|398338796|ref|ZP_10523499.1| deoxyribodipyrimidine photolyase [Leptospira kirschneri serovar Bim
str. 1051]
Length = 532
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 152/526 (28%), Positives = 248/526 (47%), Gaps = 80/526 (15%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +K+ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 25 RVRELGQNPILEKKPYILYWMSMARRLTWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 84
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC------GASLLVTDF 128
R F+L G+ N++E Q L ++ E + N + E A+L+VTD
Sbjct: 85 SPRLHKFILEGMSY---NVKEA-QRLGLTYRAFVETH-GNPIEEVFEKISSEAALVVTDD 139
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + +++ ++ + VD+++++P+ + E +A+ LR +++KL PE +
Sbjct: 140 YPAYIVPELLEQVSKKIRCKFLV--VDSNSIIPLTLYGE-FASAARILRPRVHKLFPE-V 195
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E G D E+ K
Sbjct: 196 WKFRSFHKPHKPFREKENS--W-------LEKNPNSPLKKIVWFEGGVDQIPEICKNCNF 246
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL L Y R+NP P S LSPYLHFG I
Sbjct: 247 NFQNILPAPGKKGGREEGIRLLRKFLKHGLFGYAELRSNPKPPEESYSSFLSPYLHFGHI 306
Query: 282 SAQRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCF 320
S + E RK P+ +++FL+ELI R++ +
Sbjct: 307 SQEEIVSEVLNWNLDGPWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFW 366
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +WN++Q E+V +G M
Sbjct: 367 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNSAQKELVLSGCM 426
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-K 438
++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W
Sbjct: 427 QNYLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFP 485
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVS 484
ER VFG IR M+ K+KF + Y+ YV+ + + R D+L S
Sbjct: 486 ERNVFGNIRIMSSDSTKKKFKLQTYLDYVQSL-----EERNDTLDS 526
>gi|418676413|ref|ZP_13237694.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688139|ref|ZP_13249296.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418742734|ref|ZP_13299104.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421091796|ref|ZP_15552561.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
200802841]
gi|400323241|gb|EJO71094.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409999541|gb|EKO50232.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
200802841]
gi|410737563|gb|EKQ82304.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750109|gb|EKR07092.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 516
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 152/526 (28%), Positives = 248/526 (47%), Gaps = 80/526 (15%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +K+ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELGQNPILEKKPYILYWMSMARRLTWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC------GASLLVTDF 128
R F+L G+ N++E Q L ++ E + N + E A+L+VTD
Sbjct: 69 SPRLHKFILEGMSY---NVKEA-QRLGLTYRAFVETH-GNPIEEVFEKISSEAALVVTDD 123
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + +++ ++ + VD+++++P+ + E +A+ LR +++KL PE +
Sbjct: 124 YPAYIVPELLEQVSKKIRCKFLV--VDSNSIIPLTLYGE-FASAARILRPRVHKLFPE-V 179
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E G D E+ K
Sbjct: 180 WKFRSFHKPHKPFREKENS--W-------LEKNPNSPLKKIVWFEGGVDQIPEICKNCNF 230
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL L Y R+NP P S LSPYLHFG I
Sbjct: 231 NFQNILPAPGKKGGREEGIRLLRKFLKHGLFGYAELRSNPKPPEESYSSFLSPYLHFGHI 290
Query: 282 SAQRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCF 320
S + E RK P+ +++FL+ELI R++ +
Sbjct: 291 SQEEIVSEVLNWNLDGPWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFW 350
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +WN++Q E+V +G M
Sbjct: 351 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNSAQKELVLSGCM 410
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-K 438
++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W
Sbjct: 411 QNYLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFP 469
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVS 484
ER VFG IR M+ K+KF + Y+ YV+ + + R D+L S
Sbjct: 470 ERNVFGNIRIMSSDSTKKKFKLQTYLDYVQSL-----EERNDTLDS 510
>gi|421105640|ref|ZP_15566220.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
H2]
gi|410009326|gb|EKO62982.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
H2]
Length = 532
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/526 (28%), Positives = 248/526 (47%), Gaps = 80/526 (15%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 25 RVRELGQNPILEEKPYILYWMSMARRLTWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 84
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC------GASLLVTDF 128
R F+L G+ N++E Q L ++ E + N + E A+L++TD
Sbjct: 85 SPRLHKFILEGMSY---NVKEA-QRLGLTYRAFVETH-GNPIEEVFEKISSEAALVITDD 139
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + ++ ++ + VD+++++P+ + E +A+ LR +++KL PE +
Sbjct: 140 YPAYIVPELLGQVSKKIRCKFLV--VDSNSIIPLTLYGE-FASAARILRPRVHKLFPE-V 195
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E G D E+ K
Sbjct: 196 WKFRSFHKPHKPFREKENS--W-------LEKNPNSPLKKIVWFEGGVDQIPEICKNCNF 246
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL + L Y R+NP P S LSPYLHFG I
Sbjct: 247 NFQNIPPAPGKKGGREEGIKLLRKFLKRGLFGYAELRSNPKPPEESYSSFLSPYLHFGHI 306
Query: 282 SAQRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCF 320
S + E RK P+ +++FL+ELI R++ +
Sbjct: 307 SQEEIVSEVLNWNLDGPWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFW 366
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G M
Sbjct: 367 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCM 426
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-K 438
++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W
Sbjct: 427 QNYLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFP 485
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVS 484
ER VFG IR M+ K+KF + Y+ YV+ + + R D+L S
Sbjct: 486 ERNVFGNIRTMSSDSTKKKFKLQTYLDYVQSL-----EERNDTLDS 526
>gi|418693942|ref|ZP_13254990.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
H1]
gi|421130863|ref|ZP_15591055.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
2008720114]
gi|409958294|gb|EKO17187.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
H1]
gi|410357966|gb|EKP05171.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
2008720114]
Length = 532
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/526 (28%), Positives = 248/526 (47%), Gaps = 80/526 (15%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 25 RVRELGQNPILEEKPYILYWMSMARRLTWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 84
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC------GASLLVTDF 128
R F+L G+ N++E Q L ++ E + N + E A+L++TD
Sbjct: 85 SPRLHKFILEGMSY---NVKEA-QRLGLTYRAFVETH-GNPIEEVFEKISSEAALVITDD 139
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + ++ ++ + VD+++++P+ + E +A+ LR +++KL PE +
Sbjct: 140 YPAYIVPELLGQVSKKIRCKFLV--VDSNSIIPLTLYGE-FASAARILRPRVHKLFPE-V 195
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E G D E+ K
Sbjct: 196 WKFRSFHKPHKPFREKENS--W-------LEKNPNSPLKKIVWFEGGVDQIPEICKNCNF 246
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL + L Y R+NP P S LSPYLHFG I
Sbjct: 247 NFQNILPAPGKKGGREEGIKLLRKFLKRGLFGYAELRSNPKPPEESYSSFLSPYLHFGHI 306
Query: 282 SAQRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCF 320
S + E RK P+ +++FL+ELI R++ +
Sbjct: 307 SQEEIVSEVLNWNLDGPWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFW 366
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G M
Sbjct: 367 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCM 426
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-K 438
++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W
Sbjct: 427 QNYLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFP 485
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVS 484
ER VFG IR M+ K+KF + Y+ YV+ + + R D+L S
Sbjct: 486 ERNVFGNIRTMSSDSTKKKFKLQTYLDYVQSL-----EERNDTLDS 526
>gi|398336551|ref|ZP_10521256.1| deoxyribodipyrimidine photolyase [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 511
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/515 (29%), Positives = 247/515 (47%), Gaps = 81/515 (15%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R++ L Q + +++ ++YWM +R+ N +L +A+ + K + + + + +
Sbjct: 9 RVKDLNQKPILEEKPYLLYWMSMARRLAWNHSLDYAIHLSKKYKKELLIYEPVKMDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQI-LFFLFQGEAEDNIPNFVR---ECGASLLVTDFSP 130
R F+L G+ N +E ++ L + E DN + V ASL+VTD P
Sbjct: 69 SPRFHKFILEGM---ASNAKEAKKLGLIYRAFVETPDNPISEVLGKIASNASLIVTDDYP 125
Query: 131 LREIRRCKDKICNRVSDSV--TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE-- 186
I ++ RVS+ V + VD+++++P+ + E +A+ LR +++KL PE
Sbjct: 126 AYII----PEMLERVSEIVECKLLAVDSNSIIPLSLYGE-FASAARILRPRVHKLFPEAW 180
Query: 187 ------------------YLIDYPMLEQPIEK---WTGTRQSID-----WDSIIAAVLRK 220
+L++ P P++K + G SID + I + VL
Sbjct: 181 KFRSSSKPEKPHREKENSWLLENP--NSPLKKISWFDGNPDSIDPICKKCNFIFSDVLPV 238
Query: 221 GAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR--ALSGLSPYLHF 278
++ G + +++L FL + L Y R+ P P+ S LSPYLHF
Sbjct: 239 EGKI-------GGREEGLKLL----GNFLKRGLAGYAELRSQPKSPKDSYSSLLSPYLHF 287
Query: 279 GQISAQRCA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADN 317
G IS + LE RK P + +++FL+EL+ R++
Sbjct: 288 GHISQEEVVSAVLDWELEEPWNPGVIVPENKNRKEGYFHPNDNVNSFLDELVTWRDVGFL 347
Query: 318 FCFYQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
+ P++ L+ +W +K+L H D R ++YTK+Q E A T D +WNA+Q E+V
Sbjct: 348 MFWKNPSFRKDLRILPDWIQKNLDFHGRDSRPYLYTKDQLENAVTHDAVWNAAQKELVLT 407
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
G MH ++RM W KK++EW+ E A I N+KY DGRDPN Y G +W G+ D+
Sbjct: 408 GSMHNYLRMLWGKKVIEWSADYETAFEILEDFNNKYAYDGRDPNSYTGILWCF-GLFDRP 466
Query: 437 W-KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
W ER VFG IRYM+ K+KF + Y Y+K +
Sbjct: 467 WFPERAVFGNIRYMSSDSTKKKFKLQSYFDYIKSL 501
>gi|417759360|ref|ZP_12407397.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000624]
gi|417766677|ref|ZP_12414627.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417777477|ref|ZP_12425295.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000621]
gi|417786343|ref|ZP_12434037.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
C10069]
gi|418669448|ref|ZP_13230830.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418674168|ref|ZP_13235476.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000623]
gi|418723082|ref|ZP_13281925.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 12621]
gi|418733053|ref|ZP_13290420.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 12758]
gi|421119788|ref|ZP_15580103.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
Brem 329]
gi|421125489|ref|ZP_15585741.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421136582|ref|ZP_15596685.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|400350815|gb|EJP03067.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|409944835|gb|EKN90415.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000624]
gi|409950564|gb|EKO05089.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
C10069]
gi|409963433|gb|EKO27158.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 12621]
gi|410019278|gb|EKO86100.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410347340|gb|EKO98248.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
Brem 329]
gi|410437067|gb|EKP86171.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410572717|gb|EKQ35781.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000621]
gi|410578927|gb|EKQ46780.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000623]
gi|410754751|gb|EKR16398.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410773279|gb|EKR53309.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 12758]
Length = 516
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 242/504 (48%), Gaps = 59/504 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ + P E+ P++K +D S I + +P + +
Sbjct: 183 RSFHKPNKPFREKGDSWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISAQRCALE 289
G + +++L+ FL + L Y R+NP P S LSPY+HFG IS + E
Sbjct: 243 GGREEGIKLLQ----KFLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 387
L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G M ++RM W
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCMQNYLRMLW 418
Query: 388 AKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKI 446
KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER VFG I
Sbjct: 419 GKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPERNVFGNI 477
Query: 447 RYMNYSGCKRKFDVDGYIAYVKRI 470
R M+ K+KF + Y+ YV+ +
Sbjct: 478 RTMSSDSTKKKFKLQTYLDYVQSL 501
>gi|24215349|ref|NP_712830.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Lai str. 56601]
gi|45657217|ref|YP_001303.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074624|ref|YP_005988941.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Lai str. IPAV]
gi|421084078|ref|ZP_15544942.1| FAD binding domain of DNA photolyase [Leptospira santarosai str.
HAI1594]
gi|421105129|ref|ZP_15565722.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|24196458|gb|AAN49848.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Lai str. 56601]
gi|45600455|gb|AAS69940.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458413|gb|AER02958.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Lai str. IPAV]
gi|410365439|gb|EKP20834.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410433250|gb|EKP77597.1| FAD binding domain of DNA photolyase [Leptospira santarosai str.
HAI1594]
gi|456988275|gb|EMG23389.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 516
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 242/504 (48%), Gaps = 59/504 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SLRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ + P E+ P++K +D S I + +P + +
Sbjct: 183 RSFHKPNKPFREKGDSWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISAQRCALE 289
G + +++L+ FL + L Y R+NP P S LSPY+HFG IS + E
Sbjct: 243 GGREEGIKLLQ----KFLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 387
L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G M ++RM W
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCMQNYLRMLW 418
Query: 388 AKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKI 446
KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER VFG I
Sbjct: 419 GKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPERNVFGNI 477
Query: 447 RYMNYSGCKRKFDVDGYIAYVKRI 470
R M+ K+KF + Y+ YV+ +
Sbjct: 478 RTMSSDSTKKKFKLQTYLDYVQSL 501
>gi|418708517|ref|ZP_13269320.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410771197|gb|EKR46407.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|456825238|gb|EMF73634.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Canicola str. LT1962]
Length = 516
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 241/504 (47%), Gaps = 59/504 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ + P E+ P +K +D S I + +P + +
Sbjct: 183 RSFHKPNKPFREKGDSWLEKNPNSPFKKNIWFEGDVDQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISAQRCALE 289
G + +++L+ FL + L Y R+NP P S LSPY+HFG IS + E
Sbjct: 243 GGREEGIKLLQ----KFLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 387
L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G M ++RM W
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCMQNYLRMLW 418
Query: 388 AKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKI 446
KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER VFG I
Sbjct: 419 GKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPERNVFGNI 477
Query: 447 RYMNYSGCKRKFDVDGYIAYVKRI 470
R M+ K+KF + Y+ YV+ +
Sbjct: 478 RTMSSDSTKKKFKLQTYLDYVQSL 501
>gi|162454692|ref|YP_001617059.1| hypothetical protein sce6412 [Sorangium cellulosum So ce56]
gi|161165274|emb|CAN96579.1| phr [Sorangium cellulosum So ce56]
Length = 508
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/513 (28%), Positives = 233/513 (45%), Gaps = 66/513 (12%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S++V R+R + + V+YWM +R R N+ L A+ + + P+ V L
Sbjct: 3 SSSVPELRLRTRNAMPVREGGDYVLYWMIASRRTRYNFGLERAIAWSMALDRPLVVLEAL 62
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLV 125
+ A R F++ G+ R + + + AE + A ++V
Sbjct: 63 RCGYRWASDRIHRFVIDGMADNARRLAAA-GVAHHPYVEPAEGAGKGLLGALAARACVVV 121
Query: 126 TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
TD P + R + V + +VD++ ++P+ A++++ +A++ R +++
Sbjct: 122 TDDYPCFFLPRMVASAARQAP--VRLEQVDSNGLLPM-RAADRVFTTARSFRIFWQRVIG 178
Query: 186 EYLIDYPMLE----------QPI-----EKWTGTRQSI-DWDSIIAAVLRKGAEVPEIGW 229
E+L P ++ P+ +W ++ D + L VP
Sbjct: 179 EHLGAQPAVDPLKRAKLRPAAPLPRAIARRWPAASPALLGGDPAALSALPIDHTVPPAP- 237
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR--CA 287
C G +AA + L F+ RL Y +R++P A SGLSPYLHFG ++A A
Sbjct: 238 CRGGPEAAGKALAR----FVADRLPRYLEERDHP-DAGATSGLSPYLHFGHLAAHEVFAA 292
Query: 288 LEARKARKL----------------------CPEAIDTFLEELIVRRELADN-FCFYQPN 324
+ R+A ++ + + FLE+L+ REL N F
Sbjct: 293 VARREAFRVERLGRPGDGVKRPSGSREGFWGMSASAEAFLEQLVTWRELGFNAFALGASE 352
Query: 325 YDSLKGAW-----------EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
D + +W +WA +L+ HA D+R +Y E T D +WNASQ+E+
Sbjct: 353 GDGPRPSWKRDPTEYESLPDWALATLEKHARDRRPRVYPIEALAAGATYDRIWNASQVEL 412
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
+ G+MH ++RM W KKILEW+ P EAL I I LND+Y +DGRDPN G W + G +
Sbjct: 413 LREGRMHNYLRMLWGKKILEWSRTPREALEIMIELNDRYALDGRDPNSTSGIFW-VLGRY 471
Query: 434 DQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIA 465
D+ W ER +FG IRYM+ RK + Y+A
Sbjct: 472 DRAWGPEREIFGTIRYMSSENTARKLHLKEYLA 504
>gi|417770573|ref|ZP_12418480.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Pomona]
gi|418682059|ref|ZP_13243279.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400326069|gb|EJO78338.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|409947500|gb|EKN97497.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Pomona]
gi|455670122|gb|EMF35162.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Fox 32256]
Length = 516
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 240/504 (47%), Gaps = 59/504 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKIK--CKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPM-----------LEQPIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ D P L P++K +D S I + +P + +
Sbjct: 183 RSFHKPDKPFREKGDSWLEKNLNSPLKKIIWFEGDVDQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQRCALE 289
G D +++L+ FL + L Y R+NP P S LS Y+HFG IS + E
Sbjct: 243 GGRDEGIKLLQK----FLKRGLSGYAELRSNPKPPEESYSSFLSSYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 387
L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G + ++RM W
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCIQNYLRMLW 418
Query: 388 AKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKI 446
KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER VFG I
Sbjct: 419 GKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPERNVFGNI 477
Query: 447 RYMNYSGCKRKFDVDGYIAYVKRI 470
R M+ K+KF + Y+ YV+ +
Sbjct: 478 RTMSSDSTKKKFKLQTYLDYVQSL 501
>gi|418719179|ref|ZP_13278379.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. UI 09149]
gi|410744332|gb|EKQ93073.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. UI 09149]
Length = 506
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 142/510 (27%), Positives = 238/510 (46%), Gaps = 71/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ V+YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELGQNPILEEKPYVLYWMSMARRLAWNHSLDYSIHLSQKYKKELLIYEPLKMDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLR 132
R F+L G+ R+ ++ + + F ++I + + A+L+VTD P
Sbjct: 69 SPRLHKFILDGMSYNARDAKKN-GLYYAAFVETPNNSIADVFEKLTENAALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY--LID 190
+ +K+ ++ + VD+++++P+ E +A+ LR ++++L PE
Sbjct: 128 IVPELLEKVSKKIRCKFLV--VDSNSIIPLSFYGE-FASAARILRPRVHRLFPEAWKFRS 184
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
+ E+P R+ D + L K P I W E D E+ K
Sbjct: 185 FHKPEKPF------REKGD------SWLEKNPNSPLKRIVWFEGDADQISEICKNFNFHF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISA 283
G K G FL + L Y R++P P S LSPYL FG IS
Sbjct: 233 QKIPPVPGKKGGREEGIKLLKKFLKRGLSGYAELRSHPKPPEEAYSSFLSPYLRFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P++ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLNGPWTPGVIIPENKNRKEGYFHPDSNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P++ L +W +K+L H +D R +IY+KEQ E + T D +WNA+Q E+V +G M
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYSKEQLESSSTHDVIWNAAQKELVLSGCMQN 412
Query: 382 FMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KER 440
++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER
Sbjct: 413 YLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPER 471
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
VFG IR M+ K+KF + Y+ YV+ +
Sbjct: 472 NVFGNIRTMSSDSTKKKFKLQAYLDYVQSL 501
>gi|226359410|gb|ACO51511.1| photolyase [Evechinus chloroticus]
Length = 94
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 84/93 (90%)
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
GKMHGF+RMYWAKKILEWTT PEEAL IAIYLND+Y +DGRDPNGYVGCMWSICG+HDQG
Sbjct: 1 GKMHGFLRMYWAKKILEWTTSPEEALEIAIYLNDRYSLDGRDPNGYVGCMWSICGIHDQG 60
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
W ERPVFGKIR+MNY GCKRKFDVD +I K+
Sbjct: 61 WGERPVFGKIRFMNYKGCKRKFDVDTFINRYKK 93
>gi|418737232|ref|ZP_13293630.1| putative deoxyribodipyrimidine photo-lyase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|410747391|gb|EKR00297.1| putative deoxyribodipyrimidine photo-lyase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
Length = 506
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/502 (26%), Positives = 241/502 (48%), Gaps = 55/502 (10%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ V+YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELGQNPILEEKPYVLYWMSMARRLAWNHSLDYSIHLSQKYKKELLIYEPLKMDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLR 132
R F+L G+ R+ ++ + + F + I + + ++L+VTD P
Sbjct: 69 SPRLHKFILDGMSYNARDAKKN-GLYYAAFVETPNNPIADVFEKLTENSALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL---- 188
+ +K+ ++ + VD+++++P+ E + +A+ LR ++++L PE
Sbjct: 128 IVPELLEKVSKKIRCKFLV--VDSNSIIPLSFYGEFVS-AARILRPRVHRLFPEAWKFRS 184
Query: 189 ---IDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLR-KGAEVPEIGWCESG 233
+ P E+ P+++ +D S I ++P + + G
Sbjct: 185 SSKPEKPFREKGDSWLEKNPNSPLKRIVWFEGDVDQISEICKNFNFHFQKIPPVPGKKGG 244
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQRCALEA- 290
+ +++LK FL + L Y R++P P S LSPYL FG IS + E
Sbjct: 245 REEGIKLLK----KFLKRGLSGYAELRSHPKPPEEAYSSFLSPYLRFGHISQEEIVSEVL 300
Query: 291 -------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DSLK 329
RK P++ +++FL+ELI R++ + +P++ L
Sbjct: 301 NWNLNGPWTPGVIIPENKNRKEGYFHPDSNVNSFLDELITWRDVGFLMFWKKPSFRKDLS 360
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK 389
+W +K+L H +D R +IY+KEQ E + T D +WNA+Q E+V +G M ++RM W K
Sbjct: 361 ILPDWIQKNLDFHKNDVRPYIYSKEQLESSSTHDVIWNAAQKELVLSGCMQNYLRMLWGK 420
Query: 390 KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRY 448
K++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER VFG IR
Sbjct: 421 KVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPERNVFGNIRT 479
Query: 449 MNYSGCKRKFDVDGYIAYVKRI 470
M+ K+KF + Y+ YV+ +
Sbjct: 480 MSSDSTKKKFKLQAYLDYVQSL 501
>gi|418698808|ref|ZP_13259778.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410762152|gb|EKR28320.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Bataviae str. L1111]
Length = 516
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/504 (27%), Positives = 242/504 (48%), Gaps = 59/504 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKIK--CKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ + P E+ P++K ++ S I + +P + +
Sbjct: 183 RSFHKPNKPFREKGDSWLEKNPNSPLKKNIWFEGDVNQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQRCALE 289
G + +++L+ FL + L Y R+NP P S LSPY+HFG IS + E
Sbjct: 243 GGREEGIKLLQK----FLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 387
L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G + ++RM W
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCIQNYLRMLW 418
Query: 388 AKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKI 446
KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER VFG I
Sbjct: 419 GKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPERNVFGNI 477
Query: 447 RYMNYSGCKRKFDVDGYIAYVKRI 470
R M+ K+KF + Y+ YV+ +
Sbjct: 478 RTMSSDSTKKKFKLQTYLDYVQSL 501
>gi|421118158|ref|ZP_15578508.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410010368|gb|EKO68509.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
Length = 516
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/510 (27%), Positives = 241/510 (47%), Gaps = 71/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE +
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPE-VWK 181
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
+ +P + + R+ D + L K P + W E D E+ K
Sbjct: 182 FRSFHKPNKPF---REKGD------SWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISA 283
G K G FL + L Y R+NP P S LSPY+HFG IS
Sbjct: 233 QNILPVPGKKGGREEGIKLLQKFLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P+ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P++ L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G +
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCIQN 412
Query: 382 FMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KER 440
++RM W KK++EW++ + A I N+KY DGRDPN Y G +W G+ D+ W ER
Sbjct: 413 YLRMLWGKKVIEWSSDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPER 471
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
VFG IR M+ K+KF + Y+ YV+ +
Sbjct: 472 NVFGNIRTMSSDSTKKKFKLQTYLDYVQSL 501
>gi|226359414|gb|ACO51513.1| photolyase [Sterechinus neumayeri]
Length = 98
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/93 (80%), Positives = 83/93 (89%)
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
GKMHGF+RMYWAKKILEWT PEEAL IAIYLND+Y +DGRDPNGYVGCMWSICG+HDQG
Sbjct: 3 GKMHGFLRMYWAKKILEWTASPEEALEIAIYLNDRYSLDGRDPNGYVGCMWSICGIHDQG 62
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
W ERPVFGKIR+MN+ GCKRKFDVD +I K+
Sbjct: 63 WAERPVFGKIRFMNFKGCKRKFDVDTFINRYKK 95
>gi|421092949|ref|ZP_15553677.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. 200801926]
gi|410364325|gb|EKP15350.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. 200801926]
gi|456890517|gb|EMG01331.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. 200701203]
Length = 506
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 141/510 (27%), Positives = 237/510 (46%), Gaps = 71/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ V+YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELGQNPILEEKPYVLYWMSMARRLAWNHSLDYSIHLSQKYKKELLIYEPLKMDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLR 132
R F+L G+ R+ ++ + + F + I + + ++L+VTD P
Sbjct: 69 SPRLHKFILDGMSYNARDAKKN-GLYYAAFVETPNNPIADVFEKLTENSALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY--LID 190
+ +K+ ++ + VD+++++P+ E + +A+ LR ++++L PE
Sbjct: 128 IVPELLEKVSKKIRCKFLV--VDSNSIIPLSFYGEFVS-AARILRPRVHRLFPEAWKFRS 184
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
E+P R+ D + L K P I W E D E+ K
Sbjct: 185 SSKPEKPF------REKGD------SWLEKNPNSPLKRIVWFEGDADQISEICKNFNFHF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISA 283
G K G FL + L Y R++P P S LSPYL FG IS
Sbjct: 233 QKIPPVPGKKGGREEGIKLLKKFLKRGLSGYAELRSHPKPPEEAYSSFLSPYLRFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P++ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLNGPWTPGVIIPENKNRKEGYFHPDSNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P++ L +W +K+L H +D R +IY+KEQ E + T D +WNA+Q E+V +G M
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYSKEQLESSSTHDVIWNAAQRELVLSGCMQN 412
Query: 382 FMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KER 440
++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER
Sbjct: 413 YLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPER 471
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
VFG IR M+ K+KF + Y+ YV+ +
Sbjct: 472 NVFGNIRTMSSDSTKKKFKLQAYLDYVQSL 501
>gi|418704527|ref|ZP_13265400.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410765923|gb|EKR36617.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Hebdomadis str. R499]
Length = 516
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 142/510 (27%), Positives = 239/510 (46%), Gaps = 71/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE +
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPE-VWK 181
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
+ +P + + R+ D + L K P + W E D E+ K
Sbjct: 182 FRSFHKPNKPF---REKGD------SWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISA 283
G K G FL + L Y R+NP P S LS Y+HFG IS
Sbjct: 233 QNILPVPGKKGGREEGIKLLQKFLKRGLSGYAELRSNPKPPEESYSSFLSSYIHFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P+ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P++ L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G M
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCMQN 412
Query: 382 FMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KER 440
++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER
Sbjct: 413 YLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPER 471
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
VFG IR M+ K+KF + Y+ YV+ +
Sbjct: 472 NVFGNIRTMSSDSTKKKFKLQTYLDYVQSL 501
>gi|126735514|ref|ZP_01751259.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
gi|126714701|gb|EBA11567.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
Length = 487
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 200/449 (44%), Gaps = 22/449 (4%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+ W+ + R DN + A+D N+ +PV V L + + A R F+LR R LQ
Sbjct: 29 VLCWIQQTLRSDDNPLIDAAIDLGNRLGLPVLVYHGLREDYPHASDRLHHFILRASRDLQ 88
Query: 91 RN-IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
R + + + F+ Q + + + A+ ++TD P+ R+ D R +V
Sbjct: 89 RECVRRGLRCVTFVDQAQTREKGLVYRLAATAAAVLTDDQPVFVARQQADNFAARCDRAV 148
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG------ 203
VD +VP V L+ + R L P+Y + +TG
Sbjct: 149 --FAVDTARLVPTRVLPAGLK-TTPAFRKASGALRPQYEVHRNNFVPDCPAYTGDVCFKD 205
Query: 204 ---TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
+ S + + A +P E AA L DGF+T L YP R
Sbjct: 206 ANLAQASNTALNDLMAHCDIDHSLPPAPDFEPSAAAARSAL----DGFVTDALATYPYRR 261
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
NN +S LSPYLHFG + ++ R A + A +L+EL+ RE +
Sbjct: 262 NNAADKAGVSRLSPYLHFGVLGPRKMTAAVRAA-DVTANAKWKYLDELLTWREYFHYLAY 320
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
N+ S + + R SL+ H+SD R +Y T D WNA+Q + + G MH
Sbjct: 321 QDDNFASFRSLPDAPRTSLEAHSSDPRPTLYALTDLVHGNTGDETWNAAQRQWLATGYMH 380
Query: 381 GFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+RMYW K+I++WT PE A A YLND+ +DGRDP Y W + G+ WKE+
Sbjct: 381 NNLRMYWGKQIIKWTPDPETAWDTACYLNDRLALDGRDPATYGNMKW-VFGMAKPAWKEQ 439
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
P++G + + +++ DG +A++ +
Sbjct: 440 PIYGWVAPKSDRALRKR---DGVVAWLAQ 465
>gi|418690299|ref|ZP_13251415.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
FPW2026]
gi|418713632|ref|ZP_13274356.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 08452]
gi|400360484|gb|EJP16456.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
FPW2026]
gi|410789792|gb|EKR83489.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 08452]
Length = 516
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 141/510 (27%), Positives = 239/510 (46%), Gaps = 71/510 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE +
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPE-VWK 181
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
+ +P + + R+ D + L K P + W E D E+ K
Sbjct: 182 FRSFHKPNKPF---REKGD------SWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISA 283
G K G FL + L Y R+NP P S LS Y+HFG IS
Sbjct: 233 QNILPVPGKKGGREEGIKLLQKFLKRGLSGYAELRSNPKPPEESYSSFLSSYIHFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P+ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P++ L +W +K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G +
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCIQN 412
Query: 382 FMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KER 440
++RM W KK++EW+ + A I N+KY DGRDPN Y G +W G+ D+ W ER
Sbjct: 413 YLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPER 471
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
VFG IR M+ K+KF + Y+ YV+ +
Sbjct: 472 NVFGNIRTMSSDSTKKKFKLQTYLDYVQSL 501
>gi|429964158|gb|ELA46156.1| hypothetical protein VCUG_02358 [Vavraia culicis 'floridensis']
Length = 675
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 126/228 (55%), Gaps = 28/228 (12%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALE-------ARKARKLC 297
F+ L Y RN+ LSG+S Y++ GQISA R ++ + K RK
Sbjct: 431 FMKNSLIIYDKYRNSA-DQNVLSGVSAYINDGQISAGDVVRAVIQWGEGGDRSAKRRKTG 489
Query: 298 PEA----------------IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
+ T+L E+ + RE A+ F NYD+ GA +WA+ +L
Sbjct: 490 SSIRAITGSADSKDEKMVNVTTYLNEVFIWRETAEYFITRNANYDNFYGALKWAQDTLMA 549
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEA 401
H SD REH YT EQ A+T+DP WNA Q +MV GKMHG++RMYWAK +L W PE+A
Sbjct: 550 HLSDPREH-YTLEQLVLARTSDPEWNAGQKQMVITGKMHGYVRMYWAKTMLHWFDRPEDA 608
Query: 402 LAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYM 449
+++ LND + +DG D NGY+G MW + G DQG+ E+ V GKIR M
Sbjct: 609 VSVGCLLNDTFSLDGNDGNGYLGVMWCMVGTMDQGFAEKSVLGKIRSM 656
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+Y RD+R+ DN AL + A+ V F + +++ Q F+ GL L+
Sbjct: 19 VLYLSRRDKRIVDNAALFYCYTLADH------VIFGVKPEYIVGNHMQRKFIAEGLAELK 72
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---CNRVSD 147
++ + I F L I V C +V D SPLR R D++ C R
Sbjct: 73 QSCRQ-HNIPFVLIH-----RIDELVSTCNVECIVLDHSPLRYARAVDDQLHEYCKR--R 124
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSA 173
+ + VDAHN+VP V + ++ S+
Sbjct: 125 DIALVRVDAHNIVPYGVVKDDVKSSS 150
>gi|32475803|ref|NP_868797.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
gi|32446346|emb|CAD76174.1| probable deoxyribodipyrimidine photolyase [Rhodopirellula baltica
SH 1]
Length = 837
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 214/460 (46%), Gaps = 25/460 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R F+++G R +Q
Sbjct: 30 VLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++ F + G+ ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELQARGITYAFHLERHGQRGPHLRDLCRR--AAVLVSEEMPVAPIACWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE----KWTGT 204
+ + VD +VP + + + A R I L E + P E P K+TG
Sbjct: 148 IML--VDTSCIVPS-QSVDAVPTRAFEFRRLIQSEL-ENRLSRPYEELPANLLPAKFTGP 203
Query: 205 R--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
ID + A L +V + M D F K L Y RN+
Sbjct: 204 LGFAPIDLQDVDLAELISQCKVDHSVGPVADTPGGMRAGYARWDRFREKSLTQYSRQRNH 263
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELADNFCF 320
P P +S LS YLH+G IS R A EA ARK +++EL+V RE+ FC
Sbjct: 264 PDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVFRFCL 315
Query: 321 -YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ + D++ +W+R++L+ HA D R+ + E + +++ LWN +Q ++ +G++
Sbjct: 316 EHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLLRHGEL 375
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
H +RM W K L T+ P +ALA I LN +Y IDGR P Y G +WS E
Sbjct: 376 HHNLRMTWGKAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFGQFDRPSEPE 435
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
+P++GK+R ++ D ++ R V R A
Sbjct: 436 QPIYGKVRSRTIEEQGKRIDQPQVAEWINRPVAAGLPRVA 475
>gi|417302748|ref|ZP_12089836.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327540991|gb|EGF27547.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 837
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 214/460 (46%), Gaps = 25/460 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R F+++G R +Q
Sbjct: 30 VLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++ F + G+ ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELQARGITYAFHLERHGQRGPHLRDLCRR--AAVLVSEEMPVAPIACWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE----KWTGT 204
+ + VD +VP + + + A R I L E + P E P K+TG+
Sbjct: 148 IML--VDTSCIVPS-QSIDAVPTRAFEFRRLIQSDL-ENRLSRPYEELPANLLPAKFTGS 203
Query: 205 R--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
ID + A L +V + D F K L Y RN+
Sbjct: 204 LGFAPIDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSRQRNH 263
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELADNFCF 320
P P +S LS YLH+G IS R A EA ARK +++EL+V RE+ FC
Sbjct: 264 PDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVFRFCL 315
Query: 321 -YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ + D++ +W+R++L+ HA D R+ + E + +++ LWN +Q ++ +G++
Sbjct: 316 EHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLLRHGEL 375
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
H +RM W K L T+ P +ALA I LN +Y IDGR P Y G +WS E
Sbjct: 376 HHNLRMTWGKAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFGQFDRPSEPE 435
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
+P++GK+R ++ D ++ R V R A
Sbjct: 436 QPIYGKVRSRTIEEQGKRIDQSQVAEWINRPVAAGLPRVA 475
>gi|301632135|ref|XP_002945146.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Xenopus
(Silurana) tropicalis]
Length = 96
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/82 (84%), Positives = 76/82 (92%)
Query: 379 MHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK 438
MHGF+RMYWAKKILEWT+ PEEAL ++YLND+YE+DGRDPNGYVGCMWSICG+HDQGW
Sbjct: 1 MHGFLRMYWAKKILEWTSSPEEALHFSLYLNDRYELDGRDPNGYVGCMWSICGIHDQGWA 60
Query: 439 ERPVFGKIRYMNYSGCKRKFDV 460
ER VFGKIRYMNY GCKRKFDV
Sbjct: 61 ERAVFGKIRYMNYQGCKRKFDV 82
>gi|440716033|ref|ZP_20896552.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436438979|gb|ELP32478.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 837
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 213/460 (46%), Gaps = 25/460 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R F+++G R +Q
Sbjct: 30 VLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++ F + G+ ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELQARGITYAFHLERHGQRGPHLRDLCRR--AAVLVSEEMPVAPIACWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE----KWTGT 204
+ + VD +VP + + + A R I L E + P E P K+TG
Sbjct: 148 IML--VDTSCIVPS-QSVDAVPTRAFEFRRLIQSEL-ENRLSRPYEELPANLLPAKFTGP 203
Query: 205 R--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
ID + A L +V + D F K L Y RN+
Sbjct: 204 LGFAPIDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSKQRNH 263
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELADNFCF 320
P P +S LS YLH+G IS R A EA ARK +++EL+V RE+ FC
Sbjct: 264 PDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVFRFCL 315
Query: 321 -YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ + D++ +W+R++L+ HA D R+ + E + +++ LWN +Q ++ +G++
Sbjct: 316 EHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWEALARGKSSQSLWNLAQRSLLRHGEL 375
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
H +RM W K L T+ P +ALA I LN +Y IDGR P Y G +WS E
Sbjct: 376 HHNLRMTWGKAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFGQFDRPSEPE 435
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
+P++GK+R ++ D ++ R V R A
Sbjct: 436 QPIYGKVRSRTIEEQGKRIDQSQVAEWINRPVAAGLPRVA 475
>gi|421612943|ref|ZP_16054037.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408496253|gb|EKK00818.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 837
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 213/460 (46%), Gaps = 25/460 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R F+++G R +Q
Sbjct: 30 VLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++ F + G+ ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELQARGITYAFHLERHGQRGPHLRDLCRR--AAVLVSEEMPVAPIACWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE----KWTGT 204
+ + VD +VP + + + A R I L E + P E P K+TG
Sbjct: 148 IML--VDTSCIVPS-QSIDAVPTRAFEFRRLIQSDL-ENRLSRPYEELPANLLPAKFTGP 203
Query: 205 R--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
ID + A L +V + D F K L Y RN+
Sbjct: 204 LGFDPIDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSRQRNH 263
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELADNFCF 320
P P +S LS YLH+G IS R A EA ARK +++EL+V RE+ FC
Sbjct: 264 PDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVFRFCL 315
Query: 321 -YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ + D++ +W+R++L+ HA D R+ + E + +++ LWN +Q ++ +G++
Sbjct: 316 EHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLLRHGEL 375
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
H +RM W K L T+ P +ALA I LN +Y IDGR P Y G +WS E
Sbjct: 376 HHNLRMTWGKAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFGQFDRPSEPE 435
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
+P++GK+R ++ D ++ R V R A
Sbjct: 436 QPIYGKVRSRTIEEQGKRIDQSQVAEWINRPVAAGLPRVA 475
>gi|296120560|ref|YP_003628338.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
gi|296012900|gb|ADG66139.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
Length = 843
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/456 (27%), Positives = 208/456 (45%), Gaps = 37/456 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+ P+ V L + A R+ F+L+G R +
Sbjct: 47 VLYWMHHSLRGHENPALDVAIHLAHWLEKPLLVYQGLSEDHPYANDRRHTFILQGARDVH 106
Query: 91 RNIEETFQILFFLFQGEAEDNIPNF-VRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
+ E +I L AED P+ A++LVTD P ++++ + +
Sbjct: 107 AELAEQ-KISSVLHVARAEDRGPHLKTLAAHAAVLVTDDVPTAPTIHWRNRLAASIKTPI 165
Query: 150 TIHEVDAHNVVP----------VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE 199
V+ +VP + E + KT + +L +P+ ++P
Sbjct: 166 VC--VNGACIVPPQLVKRAFDRAFAYREATAWLYKTRNTRPWPVLRYAGKPFPLDQRPF- 222
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG------FLTKRL 253
QS+D A L +++ + + GS+ G F + L
Sbjct: 223 ------QSVDLQQTSIADLLAISQI------DHSVGPVQHTVGGSQAGYTRWENFKKQGL 270
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ Y RN+ LK +S +S YLH+G +S R ++ + + +L+EL++ RE
Sbjct: 271 RRYADQRNDALK-DGVSRMSAYLHYGMVSPFTL---VRDCFEVGGASAEKYLDELLIWRE 326
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
LA FC Y+ ++++L WAR++LK +D R +Y +E +AQT DPLWNA+QM +
Sbjct: 327 LAWCFCHYRTDHEALSALPTWARQALKAGEADTRPALYDEETLARAQTHDPLWNAAQMSL 386
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
+ G++H +RM W K I WT EEAL + LN +Y +DG DP Y G +W +
Sbjct: 387 LRQGELHNNVRMTWGKAIPLWTRTTEEALRLLFDLNHRYALDGCDPASYGGLLWCLGQFD 446
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
E P+ IR + + R+ + + Y+A R
Sbjct: 447 RPFTPEEPILRSIRGRSTAEHARRLNPEKYLAKTSR 482
>gi|440492998|gb|ELQ75517.1| Deoxyribodipyrimidine photolyase/cryptochrome [Trachipleistophora
hominis]
Length = 651
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+ T+L E+ V RE A+ F PNYD+ GA +WA+ +L H SD+R+H YT +Q A+
Sbjct: 481 VTTYLNEIFVWRETAEYFILRNPNYDNFYGALKWAQDTLTAHLSDQRQH-YTLDQLILAR 539
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
T+DP WNA Q +MV GKMHG++RMYWAK +L W PE+A+ + LND + +DG D N
Sbjct: 540 TSDPEWNAGQKQMVITGKMHGYVRMYWAKTMLYWFDRPEDAVTVGCLLNDTFSLDGNDGN 599
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYM 449
GY+G MW + G DQG+ E+ V GKIR M
Sbjct: 600 GYLGIMWCMVGSMDQGFAEKSVVGKIRSM 628
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+Y RD+R+ DN AL + ++ V F + +++ Q F+ GL L+
Sbjct: 19 VLYLSRRDKRIHDNAALFYCYTLTDR------VIFGIKPEYIVGNYMQRRFIAEGLAELK 72
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSV 149
+ I F L Q I VR +V D SPLR R D++ S+ +
Sbjct: 73 GACRQ-HNIPFVLIQ-----RIDELVRTHCIDCIVVDHSPLRYSRAVDDQLYRYCKSNCI 126
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
+ VDAHN+VP V + ++ S+ ++ ++ + E++ + ++E+ W
Sbjct: 127 ALVRVDAHNIVPYAVVKDDVK-SSSAVKKRLLERFGEFVDERYLVERRECMW 177
>gi|449136587|ref|ZP_21771963.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448884760|gb|EMB15236.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 837
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 214/464 (46%), Gaps = 33/464 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R ++++G R +Q
Sbjct: 30 VLYWMHNAVRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAYIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R + F + G ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELHARGVSYAFHLERHGHRGPHLRDLCRR--AAVLVSEEMPVAPISCWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVW----VASEKLEYS---AKTLRGKINKL---LPEYLIDYPMLEQPI 198
+ + VD VVP V + E+ L ++ + LP L+ E P+
Sbjct: 148 IML--VDTSCVVPSQLIDSVPTRAFEFRRLIQNELESRLTRSYEELPANLVPSKFTE-PL 204
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
Q +D+ +I+ + V + G A D F K L Y
Sbjct: 205 GFAPIDLQDVDFADLISQC-KIDHSVGPVTDTPGGTRAGY----ARWDRFREKSLSQYSR 259
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELAD 316
RN+P P +S LS YLH+G IS R A EA ARK +++EL+V RE+
Sbjct: 260 QRNHPDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVF 311
Query: 317 NFCF-YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
FC + + D++ +WAR++L+ HA D RE + E + +++ LWN +Q ++
Sbjct: 312 RFCLEHVEDLDTMAVLPKWARETLEKHADDPREEVLDWETLARGKSSQSLWNLAQKSLLR 371
Query: 376 NGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
+G++H +RM W K L T+ P +ALA I LN +Y IDGR P Y G +WS
Sbjct: 372 HGELHHNLRMTWGKAFLAMTSQPFQALAQCIDLNHRYAIDGRSPVSYSGILWSFGQFDRP 431
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRA 479
E+P++GK+R ++ D ++ R + R A
Sbjct: 432 SEPEQPIYGKVRSRPTDEHSKRIDQAQVAEWINRPMAANLPRVA 475
>gi|384250739|gb|EIE24218.1| Cryptochrome/photolyase FAD-binding domain-containing protein
[Coccomyxa subellipsoidea C-169]
Length = 653
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/508 (26%), Positives = 217/508 (42%), Gaps = 73/508 (14%)
Query: 15 RIRVLKQGSLDKKRG---------PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
RIR + G+ RG PV+YWM R +N AL A A + VP+ +A
Sbjct: 120 RIRDFRSGNTADWRGAAGSRGDGRPVLYWMRTALRGHENPALDVARAAAERRGVPLHIAA 179
Query: 66 NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG----EAEDNIPNFVRECGA 121
L R+ F ++GLR Q + + L G ++E +
Sbjct: 180 FLLRSHTHPTERRYSFWMQGLRDTQLELRQQGVELLVYLDGMSGPQSEGWAALTALAAAS 239
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
SL++T+ P+ + + + V + VD + P+ + T R
Sbjct: 240 SLVITEEMPVSPYAQWTKDLAAALPPDVAVWAVDTACLYPMRL----------TARAPAK 289
Query: 182 KLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII--AAVLRKGAE-----------VPE-I 227
+ D P E+ +++ T + DW ++ AA + KG E +PE +
Sbjct: 290 AYIFRSSTDRPRRER-LQRLPYTDGATDWARLLGGAAAVAKGMEELREDPPARGPIPEGL 348
Query: 228 GW-----CESGED----------------AAMEVLKGSKDG------FLTKRLKNYPTDR 260
GW G D A + GS +G F TK L Y R
Sbjct: 349 GWDPLNLSAPGADIAALLAQCDWIDRRVPAVSHMHGGSGEGYARWEAFRTKGLDLYAAHR 408
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
NN LK +S LS Y H+G +S + A +A AR +++E RE+A FC
Sbjct: 409 NNALKRDGVSRLSAYHHYGMVSPFKVARDALLARS---NGATKYVDEFFTWREVAHAFCL 465
Query: 321 YQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
P ++++ +WA+++L H+ D RE + Q E+ T D +W++ Q ++ G++
Sbjct: 466 RSWPVLENVQALPQWAQQTLGRHSGDARE-CKSMRQLEEGTTGDHIWDSMQHQLKTTGEL 524
Query: 380 HGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ--GW 437
H +RM W K L W P+ A+A A ++N +Y +DG DP Y G +W G+ D+ G
Sbjct: 525 HNNLRMKWGKAFLPWLPTPDAAIAAACHVNHRYALDGCDPCSYGGILWCF-GLFDKPMGA 583
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYIA 465
+ P+FG++R M S + + + Y A
Sbjct: 584 ESTPIFGQVRRMTTSSIANRLNWNAYRA 611
>gi|455789357|gb|EMF41286.1| deoxyribodipyrimidine photo-lyase domain protein [Leptospira
interrogans serovar Lora str. TE 1992]
Length = 257
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 130/243 (53%), Gaps = 26/243 (10%)
Query: 253 LKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQRCALEA-------------------- 290
+ Y R+NP P S LSPY+HFG IS + E
Sbjct: 1 MSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSEVLNWNLDGSWTPGVIIPENKN 60
Query: 291 RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DSLKGAWEWARKSLKDHASDKRE 348
RK P+ +++FL+ELI R++ + +P++ L +W +K+L H +D R
Sbjct: 61 RKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKDLSILPDWIQKNLDFHKNDVRP 120
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYL 408
+IYTKEQ E ++T D +WNA+Q E+V +G M ++RM W KK++EW+ + A I
Sbjct: 121 YIYTKEQLENSKTHDVIWNAAQKELVLSGCMQNYLRMLWGKKVIEWSPDYQTAFEILEEF 180
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
N+KY DGRDPN Y G +W G+ D+ W ER VFG IR M+ K+KF + Y+ YV
Sbjct: 181 NNKYAYDGRDPNSYNGILWCF-GLFDRPWFPERNVFGNIRTMSSDSTKKKFKLQTYLDYV 239
Query: 468 KRI 470
+ +
Sbjct: 240 QSL 242
>gi|113195452|ref|YP_717589.1| DNA photolyase 1 [Clanis bilineata nucleopolyhedrosis virus]
gi|94958993|gb|ABF47394.1| DNA photolyase 1 [Clanis bilineata nucleopolyhedrosis virus]
Length = 101
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 75/87 (86%)
Query: 379 MHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK 438
MHG+MRMYWAKKI+EWT + AL AI+LND Y +DGRDPN YVGCMWSICGVHD+ +K
Sbjct: 1 MHGYMRMYWAKKIMEWTPSADMALGYAIFLNDHYSVDGRDPNNYVGCMWSICGVHDRPFK 60
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIA 465
ER +FG+IRYMNY+GCKRKF+VD YIA
Sbjct: 61 ERKIFGRIRYMNYAGCKRKFNVDLYIA 87
>gi|293652307|gb|ADE60792.1| CPD photolyase [Spodoptera exigua]
Length = 162
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 6/166 (3%)
Query: 163 WVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
WVAS+K EYSA+T+R KIN L EYL ++P + + +SIDWD I +
Sbjct: 3 WVASDKQEYSARTIRNKINSKLGEYLTEFPPIIKHPYTAKFEPESIDWDEAIVS-READK 61
Query: 223 EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
V + W G D A+++LK FL +RLK + T RN+P K ALS LSP+ HFGQIS
Sbjct: 62 NVGPVDWARPGYDNALKMLKS----FLDQRLKVFATKRNDPTK-DALSNLSPWFHFGQIS 116
Query: 283 AQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
QR AL ++ + E+++ FLEE IVRRELADNFCFY +YDS+
Sbjct: 117 VQRVALCVQEHKGKHTESVNAFLEEAIVRRELADNFCFYCEHYDSI 162
>gi|187234362|gb|ACD01433.1| DNA photolyase I [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|187234370|gb|ACD01437.1| DNA photolyase I [Plusia acuta nucleopolyhedrovirus]
Length = 247
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 128/257 (49%), Gaps = 28/257 (10%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP-----IEKWTGTRQS 207
+VDAHNVVP W+ + + KI+ L L + ++ Q + + T S
Sbjct: 1 QVDAHNVVPCWLTFIADRHDYDEFKSKIDAELENLLTPFSLVIQHPYKSVVSIESSTNTS 60
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW +++++ V I W E+G +AA+ L F+ + NY +NP+ +
Sbjct: 61 IDWSNLLSS-RNVDHSVKRIKWTEAGYNAAILRLAT----FIQCYIYNYKNSIHNPVSSK 115
Query: 268 ALSGLSPYLHFGQISAQRCALEARKA-------------RKLCPEAIDTFLEELIVRREL 314
S LSP+ HFG ISAQR R RKL I+ F+E + RRE
Sbjct: 116 Q-SDLSPFFHFGFISAQRVIYHLRFCVTKKSVLQKTVFIRKL-KNNIEKFIENCLYRREF 173
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
ADNFC++ NY + A ++ + H R + Y+ + E +QT D +WN +Q ++
Sbjct: 174 ADNFCYFNLNYITFNAASPQIKRYIAKHL---RYYTYSLNELEYSQTHDNIWNKAQEDLR 230
Query: 375 YNGKMHGFMRMYWAKKI 391
NGK++ F+R+YWAKKI
Sbjct: 231 ENGKIYPFIRVYWAKKI 247
>gi|374723916|gb|EHR75996.1| putative DNA deoxyribodipyrimidine photolyase [uncultured marine
group II euryarchaeote]
Length = 456
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/446 (26%), Positives = 195/446 (43%), Gaps = 35/446 (7%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPVV W+ R+ +N A+ A ++N P+ + + +++ A R +L
Sbjct: 25 GPVVVWLKSSFRLHENPAIDLGRHIAAEHNRPLLIYHGIDERYPHASLRHHTMLLDAAVD 84
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVS 146
+ + L ++ + + P+ ++ AS ++TD PL D I S
Sbjct: 85 MDEGCRKAG--LRYVLHVARDGHRPSVMKAFSQSASCIITDLFPLPPWTNWVDSIA--AS 140
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL-IDYPMLEQPIEKWTG-- 203
+ + +VD H V+P+ + + ++ K R K+ + L +P ++ E +TG
Sbjct: 141 AACPVFDVDCHCVIPMPLFGKSVDRPYK-FRDATKKMRKKRLQATWPTIDVRPEAYTGPL 199
Query: 204 ------TRQSIDWDSIIAAVLRKGAEVPEI--GWCE-SGEDAAMEVLKGSKDGFLTKRLK 254
+ I S +L K + P + W E GE A+ + F K L
Sbjct: 200 PFEPVNVNEDIKNLSKRFELLSKCSIDPSVLPVWHERGGEKEALSKWQR----FYDKGLN 255
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
Y RNN P +S LS H+G +S R A R+A + ++ + +L+EL++ RE
Sbjct: 256 GYARRRNNAADPNGVSRLSAAFHYGFLSPMRVA---REAAAVGTKSAEKYLDELLIFREH 312
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
+ F + EWA +S ++ + D R + E A + LWN Q ++
Sbjct: 313 PWHHIFAASDPYDASNLPEWALQSWRETSDDPRVVRLKDHEMEYAASPLTLWNLCQRSLL 372
Query: 375 YNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
+G++H +RM W K + WT E +L I LNDKY +DGRDP+ VG W
Sbjct: 373 RHGELHNNLRMTWGKAVPLWTESLEHSLYIGQTLNDKYALDGRDPSSVVGVQWC------ 426
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDV 460
G +RP F + M G RK DV
Sbjct: 427 HGLFDRPFFPSMPVM---GVVRKRDV 449
>gi|82548258|gb|ABB82949.1| putative DNA deoxyribodipyrimidine photolyase [uncultured organism
HF70_19B12]
Length = 738
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 178/411 (43%), Gaps = 29/411 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V++WM R+ +N A A ++P+ + + +++ A R F++ G +
Sbjct: 27 VIHWMRAALRLDENPTFDVARTIAKNLSLPLLIYQGIDERYPYASYRHHRFLIEGAADVA 86
Query: 91 RNIEETF--QILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ +L G E N+ +E A+++VTD L + + R+
Sbjct: 87 HRANQIGVKYLLHVSRDGHREPNLQYIAQE--AAVVVTDLVDLSPWSNWTESVA-RIRPV 143
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI----EKWTGT 204
+ EVDAH V+P V + + ++ +P I + WT
Sbjct: 144 I---EVDAHCVLPRPVFGRTFDRPFRFRDATKREMKRRMAQPWPSTNHEITSFPDTWTPP 200
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA--MEVLKGSK------DGFLTKRLKNY 256
+D + LRK + C+ +++ G+ + FL++ L Y
Sbjct: 201 FTPVD----ASLELRKDGAQSLLAACQIDPTVVPVTDMIGGASVAMTRWNNFLSEGLSRY 256
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
RNN K +SG+SP+LH G I+A R R A + FL+E++V RE A
Sbjct: 257 HRTRNNAAKRGGVSGMSPWLHHGMIAATRLV---RDAANSPTKGAQKFLDEMLVFREHAY 313
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
+ N + WAR+S ++ K ++ E+ T DPLWNA+Q +V +
Sbjct: 314 HHAHEVDNPLEWRHLPGWARESWQNTCLVKYPLLWM--DLERGNTDDPLWNAAQTGIVRH 371
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
G MH +RM W K + W PEEA++ LND+Y +DGR+PN G MW
Sbjct: 372 GVMHNNVRMTWGKGTVRWVDDPEEAMSFTQELNDRYALDGRNPNSIAGVMW 422
>gi|113195453|ref|YP_717590.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
gi|94958994|gb|ABF47395.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
Length = 372
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 14/216 (6%)
Query: 13 PGRIRVLKQG----------SLDKK-RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPV 61
P R+R+LK G +L+ G VVYWM RD RV+DNWA+I+A A + VP+
Sbjct: 94 PRRVRILKLGRSRTAVVNDDTLNGDVDGGVVYWMSRDSRVQDNWAMIYAQRLAIERQVPL 153
Query: 62 AVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121
V F L FL A RQ F+L GL+ +QR E I F + G + + ++V+
Sbjct: 154 HVCFCLTSSFLNASLRQFDFLLEGLKSVQRECHE-LNIGFHVLDGSGDLTLNDWVQTNNI 212
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
S +V DF+PLR +R + ++++ V +VDAHN+VP W AS K E A T R K+
Sbjct: 213 SAVVCDFNPLRVVRDWVATVKSQLAPHVFFAQVDAHNIVPCWQASLKQEVYASTFRPKVL 272
Query: 182 KLLPEYLIDYP-MLEQPIEKWTGTRQSIDWDSIIAA 216
L +L ++P ++ P K T IDW ++ +
Sbjct: 273 NQLDRFLTEFPSVIVHPYGK-NRTAADIDWKYLLQS 307
>gi|456970159|gb|EMG11014.1| deoxyribodipyrimidine photo-lyase domain protein [Leptospira
interrogans serovar Grippotyphosa str. LT2186]
Length = 152
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 337 KSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTT 396
K+L H +D R +IYTKEQ E ++T D +WNA+Q E+V +G M ++RM W KK++EW+
Sbjct: 4 KNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAAQKELVLSGCMQNYLRMLWGKKVIEWSP 63
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGKIRYMNYSGCK 455
+ A I N+KY DGRDPN Y G +W G+ D+ W ER VFG IR M+ K
Sbjct: 64 DYQTAFEILEEFNNKYAYDGRDPNSYNGILWCF-GLFDRPWFPERNVFGNIRTMSSDSTK 122
Query: 456 RKFDVDGYIAYVKRI 470
+KF + Y+ YV+ +
Sbjct: 123 KKFKLQTYLDYVQSL 137
>gi|187234366|gb|ACD01435.1| DNA photolyase I [Pseudoplusia includens nucleopolyhedrovirus]
Length = 243
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 30/256 (11%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTR 205
+VDAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 1 QVDAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT- 57
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 58 -YIDWYALITS-RNIDQSIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFS 111
Query: 266 PRALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELA 315
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE A
Sbjct: 112 INQ-SDLSPFFHFGFLSTQRVIYYLTFHILKTRGRYGSKGKLKKNVERFLENLLYRREYA 170
Query: 316 DNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
DN+C + NY+ K E R + H + ++Y+ E+ E +QT D LWN +Q ++
Sbjct: 171 DNYCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYDVLWNKTQNDLRE 227
Query: 376 NGKMHGFMRMYWAKKI 391
+GK++ +R+YWAKKI
Sbjct: 228 HGKIYPTLRVYWAKKI 243
>gi|302850180|ref|XP_002956618.1| photolyase [Volvox carteri f. nagariensis]
gi|300258145|gb|EFJ42385.1| photolyase [Volvox carteri f. nagariensis]
Length = 667
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 270 SGLSPYLHFGQIS----AQRCALE-ARKARKLCPEAIDTFLEELIVRRELADNFCFYQ-P 323
S +SPYLH+G +S A+R E AR+A FL+EL+V REL+ +FCFY+
Sbjct: 463 SRMSPYLHWGMVSPFRSAERGGYEIAREAAASGGSGAGKFLDELLVWRELSYSFCFYRYS 522
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
SL WA+ +L HA+D R + T +Q E T DP W+A+Q ++ G++H +
Sbjct: 523 QLQSLSVLPRWAQDTLAAHATDPRV-VKTLQQLELGATGDPFWDAAQCQLSSYGELHNNV 581
Query: 384 RMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERP-- 441
RM W K +L W P+ AL +A++LN +Y +DG DP Y G +W G+ D G +E P
Sbjct: 582 RMTWGKSLLGWCPTPQRALDVALHLNHRYALDGCDPASYGGVLWCF-GLFD-GPREAPGT 639
Query: 442 -VFGKIRYMNYSGCKRKFDVDGYIA 465
+ G +R + R+ + Y A
Sbjct: 640 AITGALRRRPTAVHARRLNPAAYRA 664
>gi|253761748|ref|XP_002489249.1| hypothetical protein SORBIDRAFT_0012s014610 [Sorghum bicolor]
gi|241947109|gb|EES20254.1| hypothetical protein SORBIDRAFT_0012s014610 [Sorghum bicolor]
Length = 88
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 61/71 (85%)
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
DPNGYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVK +V KKR
Sbjct: 1 DPNGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKSLVARAKKR 60
Query: 478 RADSLVSGKEK 488
+ + ++ + K
Sbjct: 61 KTEEYLNPRSK 71
>gi|395490722|ref|ZP_10422301.1| DNA photolyase FAD-binding protein [Sphingomonas sp. PAMC 26617]
Length = 488
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 126/485 (25%), Positives = 197/485 (40%), Gaps = 66/485 (13%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+R L + V+ W+ + R DN + A+ N +PV V + + +
Sbjct: 15 QAPRVRALNDKVPAQNGRYVLCWLQQALRASDNPVIDAAIRLGNALRLPVLVYHGVREDY 74
Query: 72 LGAKARQLGFML------------RGLRLLQR--NIEETFQILFFLFQGEAEDNIPNFVR 117
A R F+L RGL +Q + L + GEA
Sbjct: 75 PYASDRLHHFILGASIDLAEGCRQRGLACVQHVDRAGRREKGLVYRLGGEA--------- 125
Query: 118 ECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR 177
A++L+ D P R +++ RV V + V+A +VP V + ++ LR
Sbjct: 126 ---AAILLED-QPTFVARWQSERVAARVD--VPVFAVNAACLVPPAVIGDDVQGRTAFLR 179
Query: 178 -------------GKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV 224
+I + P Y P +T R D + A L +
Sbjct: 180 RHEPARAVWAAWDEEIATIAP-YAGALP--------FTPDRLCADELGTLIAGLDIDHSL 230
Query: 225 PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ 284
P + +G AA + L + L Y + RN+ + SGLSPYLHFG +
Sbjct: 231 PVVPMHPAGRRAAEDRLAR----LVADVLPGYASTRNDATRADGASGLSPYLHFG-VLGP 285
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE----WARKSLK 340
R + A + F +E++ RE + YQ + + ++ WAR++L
Sbjct: 286 REVMAAVNGSAAGGQHKRKFADEVLGWRE----WFHYQARHLAAPERYDRIAPWARQTLT 341
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEE 400
DHA D R T K +T D WNA Q + + G MH +RMYW+K+++ T PE
Sbjct: 342 DHAGDLRPDQETLSALLKGETRDETWNACQRQFLAEGWMHNNLRMYWSKRLIAMTPSPEA 401
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 460
A A A YLND+ +DGRDP+ Y G +ERPV+G++ + +
Sbjct: 402 AWATACYLNDRLSLDGRDPSTYGNIAMMFAGAPAD--RERPVYGRVATRGDGSTRHRAGG 459
Query: 461 DGYIA 465
D ++A
Sbjct: 460 DAWLA 464
>gi|294888807|ref|XP_002772597.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239876941|gb|EER04413.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 198
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 107/198 (54%), Gaps = 14/198 (7%)
Query: 7 PSTAVQPGRIRVLKQGSLD-KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
P ++V P RIRVL Q GPV+YWM R+ R RDNWALIHA + A ++ P+ V +
Sbjct: 2 PQSSVSPDRIRVLNQPVTGLTSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVY 61
Query: 66 NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRE----CGA 121
NL +LG RQ F + GL+++ N+ + L F EA P F+ + G
Sbjct: 62 NLAVGYLGGGLRQHAFKVGGLKVVAANLSQ----LNIPFAIEASPKFPAFLADITERVGC 117
Query: 122 SLLVTDFSPLR---EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
+VTDF+PLR E K R+ + VDAHNVVP WV S+K+E +A T+R
Sbjct: 118 KYVVTDFTPLRLNKEWVAAFTKHAKRL--DIRFELVDAHNVVPCWVTSDKMERAAVTIRP 175
Query: 179 KINKLLPEYLIDYPMLEQ 196
K+ E+ YP L++
Sbjct: 176 KLWHHFDEFCTKYPRLKR 193
>gi|187234368|gb|ACD01436.1| DNA photolyase [Pseudoplusia includens nucleopolyhedrovirus]
Length = 242
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 127/254 (50%), Gaps = 30/254 (11%)
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTRQS 207
DAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 2 DAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT--Y 57
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 58 IDWYALITS-RNIDQSIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFSIN 112
Query: 268 ALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELADN 317
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE ADN
Sbjct: 113 Q-SDLSPFFHFGFLSTQRVIYYLTFHILKTRGRYGSKGKLKKNVERFLENLLYRREYADN 171
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
+C + NY+ K E R + H + ++Y+ E+ E +QT D LWN +Q ++ +G
Sbjct: 172 YCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYDVLWNKTQNDLREHG 228
Query: 378 KMHGFMRMYWAKKI 391
K++ +R+YWAKKI
Sbjct: 229 KIYPTLRVYWAKKI 242
>gi|395864000|gb|AFN80538.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864002|gb|AFN80539.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864004|gb|AFN80540.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864006|gb|AFN80541.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 30/252 (11%)
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTRQS 207
DAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 1 DAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT--Y 56
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 57 IDWYALITS-RNIDQSIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFSIN 111
Query: 268 ALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELADN 317
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE ADN
Sbjct: 112 Q-SDLSPFFHFGFLSTQRVIYYLTFHILKTRGRYGSKGKLKKNVERFLENLLYRREYADN 170
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
+C + NY+ K E R + H + ++Y+ E+ E +QT D LWN +Q ++ +G
Sbjct: 171 YCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYDVLWNKTQNDLREHG 227
Query: 378 KMHGFMRMYWAK 389
K++ +R+YWAK
Sbjct: 228 KIYPTLRVYWAK 239
>gi|404252236|ref|ZP_10956204.1| DNA photolyase FAD-binding protein [Sphingomonas sp. PAMC 26621]
Length = 535
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 189/466 (40%), Gaps = 66/466 (14%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+R L + V+ W+ + R DN + A+ N +PV V + + +
Sbjct: 15 QAPRVRALNDKVPAQNGRYVLCWLQQALRASDNPVIDAAIRFGNALRLPVLVYHGVREDY 74
Query: 72 LGAKARQLGFML------------RGLRLLQR--NIEETFQILFFLFQGEAEDNIPNFVR 117
A R F+L RGL +Q + L + GEA
Sbjct: 75 PYASDRLHHFILGASIDLAEGCRQRGLACVQHVDRAGRREKGLVYRLGGEA--------- 125
Query: 118 ECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR 177
+ +V + P R +++ RV V + V+A +VP V ++ LR
Sbjct: 126 ----AAIVLEDQPTFVARWQSERVAARVD--VPVFAVNAACLVPPAVICPDVQGRTAFLR 179
Query: 178 -------------GKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV 224
+I + P Y P +T + +D + A L +
Sbjct: 180 RHEPARAVWAAWDAEIADIAP-YAGALP--------FTPDKLRVDELGTLIAGLDIDHSL 230
Query: 225 PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ 284
P + +G AA E L + L Y + RN+ + SGLSPYLHFG +
Sbjct: 231 PVVPMHPAGRRAAEERLAR----LVADVLPGYASTRNDATRADGASGLSPYLHFG-VLGP 285
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE----WARKSLK 340
R + A + F +E++ RE + YQ + + ++ WAR++L
Sbjct: 286 REVMAAVNGSAAGGQHKRKFADEVLGWRE----WFHYQARHLAAPERYDRIAPWARQTLI 341
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEE 400
DHA D R T + +T D WNA Q + + G MH +RMYW+K+++ T PE
Sbjct: 342 DHAGDLRPDQETLTALLRGETRDETWNACQRQFLAEGWMHNNLRMYWSKRLIAMTPSPEA 401
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKI 446
A A A YLND+ +DGRDP+ Y G +ERPV+G++
Sbjct: 402 AWATACYLNDRLSLDGRDPSTYGNIAMMFAGAPAD--RERPVYGRV 445
>gi|395864010|gb|AFN80543.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864012|gb|AFN80544.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 30/252 (11%)
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTRQS 207
DAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 1 DAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT--Y 56
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 57 IDWYALITS-RNIDQYIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFSIN 111
Query: 268 ALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELADN 317
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE ADN
Sbjct: 112 Q-SDLSPFFHFGFLSTQRVIYYLTFXILKTRGRYGSKGKLKKNVERFLENLLYRREYADN 170
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
+C + NY+ K E R + H + ++Y+ E+ E +QT D LWN +Q ++ +G
Sbjct: 171 YCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYDVLWNKTQNDLREHG 227
Query: 378 KMHGFMRMYWAK 389
K++ +R+YWAK
Sbjct: 228 KIYPTLRVYWAK 239
>gi|159469510|ref|XP_001692906.1| CPD photolyase class II [Chlamydomonas reinhardtii]
gi|158277708|gb|EDP03475.1| CPD photolyase class II [Chlamydomonas reinhardtii]
Length = 946
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVD--QANKNNVPVAVAFNLF 68
V P R+RVLK GS+ K GPVVYWM RDQR+ DNWAL+HA++ Q + VAVAFNL
Sbjct: 50 VNPKRVRVLKPGSIGK--GPVVYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLV 107
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FLGA ARQ GFMLRGLR L +E I F+L +G+ +P V GA LL
Sbjct: 108 PAFLGAGARQFGFMLRGLRQLAPRLEAR-GIKFYLLKGDPVHTLPQLVSGLGAGLL 162
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 411 KYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
K+ + DP + + S G GW ER VFGKIRYMNY+GCKRKFD+ Y+AYV +
Sbjct: 138 KFYLLKGDPVHTLPQLVSGLGAGLLGWAERAVFGKIRYMNYNGCKRKFDIKAYVAYVSKA 197
Query: 471 VGGTKKR 477
V K +
Sbjct: 198 VAEAKAK 204
>gi|395864008|gb|AFN80542.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 30/252 (11%)
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTRQS 207
DAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 1 DAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT--Y 56
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 57 IDWYALITS-RNIDQYIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFSIN 111
Query: 268 ALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELADN 317
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE ADN
Sbjct: 112 Q-SDLSPFFHFGFLSTQRVIYYLTFYILKTRGRYGSKGKLKKNVERFLENLLYRREYADN 170
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
+C + NY+ K E R + H + ++Y+ E+ E +QT D LWN +Q ++ +G
Sbjct: 171 YCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYDVLWNKTQNDLREHG 227
Query: 378 KMHGFMRMYWAK 389
K++ +R+YWAK
Sbjct: 228 KIYPTLRVYWAK 239
>gi|402576393|gb|EJW70352.1| DNA photolyase 1, partial [Wuchereria bancrofti]
Length = 99
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGP 398
+ +H DKRE+IY ++ E+ T D WNA+Q E+V+ KM G++RMYWAKK++EW+
Sbjct: 1 MDEHRHDKREYIYGYKELEEGCTHDVYWNAAQFELVFTHKMSGYLRMYWAKKVIEWSHDY 60
Query: 399 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
E A A I NDKYE+DGRDPNGY G MW+ G+HD+
Sbjct: 61 EFAYAFLIEQNDKYELDGRDPNGYCGVMWNF-GMHDRA 97
>gi|402581048|gb|EJW74997.1| hypothetical protein WUBG_14096, partial [Wuchereria bancrofti]
Length = 182
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 7/154 (4%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
E GEDAA+ VL + F+ L Y +RN P + S LSPY+HFG ++ ++
Sbjct: 29 EGGEDAALRVL----NYFIANNLNTYDKERNIPNSGKQ-SLLSPYIHFGMLNPIMIVVKV 83
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREH 349
+++ A D FLEEL+VRRELA NF +Y + YD+ EWA+K++ +H DKRE+
Sbjct: 84 KQSEAP-KSAKDAFLEELVVRRELAHNFVYYYRDTYDTFDCLPEWAKKAMDEHRHDKREY 142
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
IY ++ E+ T D WNA+Q E+V+ K+ F
Sbjct: 143 IYGYKELEEGCTHDVYWNAAQFELVFTHKVPSFF 176
>gi|41023443|emb|CAE52697.1| hypothetical photolyase [Fowlpox virus isolate HP-438/Munich]
Length = 200
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML 83
++K V+YWMFRDQRV+DNWALI+A A K +P+ + F + +F +R F++
Sbjct: 32 INKNSKVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKFHTTTSRHFMFLI 91
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
GL+ + + I F L G + IP V++ +++TDF PLR R +
Sbjct: 92 SGLKEVAEECKR-LCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTVI 150
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT 175
+ D++ +VDAHN+VP W AS+K EY A+T
Sbjct: 151 SLPDNIPFIQVDAHNIVPCWEASDKEEYGART 182
>gi|392975305|gb|AFM95219.1| photolyase 1-like protein, partial [Cynara cardunculus var.
scolymus]
Length = 51
Score = 107 bits (266), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/51 (90%), Positives = 47/51 (92%)
Query: 385 MYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
MYWAKKILEWT+ PEEAL IAI LNDKY IDGRDPNGYVGCMWSICGVHDQ
Sbjct: 1 MYWAKKILEWTSSPEEALEIAINLNDKYHIDGRDPNGYVGCMWSICGVHDQ 51
>gi|119391206|dbj|BAF41983.1| cycrobutane pyrimidine dimer photolyase [Cyamopsis tetragonoloba]
Length = 51
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 385 MYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
MYWAKKILEWT+GPEEAL I+IYLNDKYE+DGRDP+GYVGCMWSICGVHDQ
Sbjct: 1 MYWAKKILEWTSGPEEALEISIYLNDKYELDGRDPSGYVGCMWSICGVHDQ 51
>gi|414886907|tpg|DAA62921.1| TPA: hypothetical protein ZEAMMB73_837586 [Zea mays]
Length = 66
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 50/55 (90%)
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRAD 480
MWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR+V KKR+ +
Sbjct: 1 MWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLVPRAKKRKTE 55
>gi|46203633|ref|ZP_00051230.2| COG0415: Deoxyribodipyrimidine photolyase [Magnetospirillum
magnetotacticum MS-1]
Length = 105
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
EM G MH +RMYW KKILEW+ PEEA A + LN++Y +DGRD N + W I G
Sbjct: 3 EMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAW-IFG 61
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
+HD+ W+ R +FG +RY + + RKFD Y V R+
Sbjct: 62 LHDRPWQTRKIFGSVRYQSENSL-RKFDAKAYERAVARL 99
>gi|428182904|gb|EKX51763.1| hypothetical protein GUITHDRAFT_102370 [Guillardia theta CCMP2712]
Length = 562
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 63/112 (56%)
Query: 336 RKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWT 395
R++LK HA D RE T+E+ E+ +T D W++ Q +V G++H +RM W K IL W
Sbjct: 449 RQTLKKHAHDAREREATEEKLEEGRTGDEFWDSMQQILVKQGELHNNLRMTWGKAILAWA 508
Query: 396 TGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIR 447
+ PE A+ IA LNDKY +DG DP G +W ER V G +R
Sbjct: 509 SDPERAVDIAQRLNDKYALDGADPCSVSGVLWCAGLFDGPKTPERKVMGTVR 560
>gi|297181263|gb|ADI17456.1| deoxyribodipyrimidine photolyase [uncultured Gemmatimonadales
bacterium HF0130_03D03]
Length = 89
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 385 MYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
M W KKILEW+ P EAL I LN++Y +DGRDPN + G MW + G D+GW ERPVFG
Sbjct: 1 MLWGKKILEWSAHPREALDTMIELNNRYALDGRDPNSWSGIMW-VMGRFDRGWPERPVFG 59
Query: 445 KIRYMNYSGCKRKFDVDGYIA 465
K+R M +RK + Y++
Sbjct: 60 KVRSMTSDSTRRKVKLTDYLS 80
>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
Length = 474
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 171/362 (47%), Gaps = 28/362 (7%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLRL 88
PV++W+ RD R+RDN AL A++ +P+ + + D+ LGA + +LG GL
Sbjct: 6 PVIWWIRRDLRLRDNPALTAALETGGP-IIPLYI-HDPQDEALGAAPKFRLGL---GLER 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
+ +E L L +G+A + + ++E GA +V + P R + K + +
Sbjct: 61 FAKTLEGHGSRL-TLRKGDALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLKAA 119
Query: 147 DSVTIHEVDAHNVVPVWVASEK--LEYSAKTLRGK-INKLLPEYLIDYPMLEQPIEKWTG 203
D +T+ + W K Y T K + E LID P + W
Sbjct: 120 D-ITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLPKPDAWPA 178
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
T + D++ I+A +R+GAE+ G+C G+DAA+E L D FL +R++ Y DR+ P
Sbjct: 179 TDELADYN--ISAAMRRGAEI-VAGYCRVGDDAALEQL----DRFLEERVQTYKADRDFP 231
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
+ A S LS L +G+IS R +A + + + FL+E +V RE A + ++ P
Sbjct: 232 SRA-ATSELSENLAWGEISPHRMWHLGAQAMRDGKQGAEHFLKE-VVWREFAYHLMYHSP 289
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+ + EW +D D E + ++++ QT +A+ E+ GKMH
Sbjct: 290 HILTRNWREEWDGFPWQD---DPGEALL---RWQQGQTGYDFVDAAMRELYVTGKMHNRA 343
Query: 384 RM 385
RM
Sbjct: 344 RM 345
>gi|449016982|dbj|BAM80384.1| similar to DNA photolyase [Cyanidioschyzon merolae strain 10D]
Length = 690
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWE-WARKSLKDHASDKREHI-YTKEQFEK 358
+ F+E + RRELA NF Y YDS GA WAR+SL D AS + H Y++ +
Sbjct: 488 VRKFMENMY-RRELAYNFVMYNKRYDSFDGAVPVWARRSLYDRASRRTSHYQYSETDWYN 546
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRD 418
A+T + WNA Q E++ G+ R YW +KILE+ P A +AI +N+ +D D
Sbjct: 547 ARTHNMRWNAVQRELLTRGRNICRDRNYWCQKILEYENDPAHAFELAIRINNHLMLDAND 606
Query: 419 PNGYVGC 425
P GY C
Sbjct: 607 PVGYATC 613
>gi|323453597|gb|EGB09468.1| hypothetical protein AURANDRAFT_8694, partial [Aureococcus
anophagefferens]
Length = 93
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
WAR L DHA+D R + E+ E+ ++ D +W+A Q ++ +G++H +RM W K L
Sbjct: 1 WARTQLADHAADART-VVGPERLERGESGDVMWDAMQRCLIRHGELHNNLRMTWGKAFLR 59
Query: 394 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
W P EA +A+ LND Y +DG DPN Y G W
Sbjct: 60 WAPTPREAFDLAMRLNDAYALDGLDPNSYAGVAW 93
>gi|397619713|gb|EJK65369.1| hypothetical protein THAOC_13774 [Thalassiosira oceanica]
Length = 673
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 32/212 (15%)
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL---------------C 297
+ Y +RN+P K + S +S YL+ G +S R E ++A+K
Sbjct: 372 MSRYGKERNDPRKVHSPSRMSAYLNLGVVSIFRLVWEVKRAQKQEQKGKSSSSHTKNRWN 431
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
D + EE++ RE + F + +YD + W+ L +H + R T +
Sbjct: 432 KSGCDKYEEEIVKWREFSYAHAFSREDYDDVLSLPRWSMNCLDNHRNRSR---LTLAELA 488
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEW----TTGPEEALAIAI----YLN 409
T + W+A Q ++ G++H +RM W K ++EW T+ P ++ + +LN
Sbjct: 489 TGNTGESKWDAMQKYLLQTGELHNNVRMTWGKTVVEWVGCSTSSPGTPASLTLRTLCFLN 548
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERP 441
D++ +DG P Y G +W GW E+P
Sbjct: 549 DRFALDGLSPPSYAGVLWC------HGWTEKP 574
>gi|340384749|ref|XP_003390873.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like, partial
[Amphimedon queenslandica]
Length = 154
Score = 88.6 bits (218), Expect = 6e-15, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-------EIRRCKDKICNRVSDSV 149
+I F L G+A+ +P F+ + S++V DFSPLR E DKI V
Sbjct: 5 LKIPFHLLLGKAQSCLPPFIAKESVSVVVCDFSPLRVPLGWVKETGAELDKI------KV 58
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID 209
+ +VDAHN+VPVW+AS+K EY+A+T+R KI+K LPE+L ++P + T +S +
Sbjct: 59 PLVQVDAHNIVPVWLASDKQEYAARTIRNKIHKFLPEFLTEFPPVTVHTHNSKLTMKSTN 118
Query: 210 WDSIIAAVLRKGAEVPEIGWCESG 233
W + L V E+ W G
Sbjct: 119 WIKAKES-LEIDMTVSEVSWVTPG 141
>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
Length = 478
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 161/366 (43%), Gaps = 33/366 (9%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLR 87
PV++W+ RD R+ DN AL AVD + +PV + F+ D+ LGA R +LG GL
Sbjct: 9 APVIWWIRRDLRLSDNAALTAAVD-SGAPVLPVFI-FDSQDEDLGAAPRFRLGL---GLE 63
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRV 145
L + +E L L +G A + + ++E GA + + P R +D +
Sbjct: 64 HLAQRLERLGSRL-ILRRGSALQVLQDLLKETGAQAVHWTRAYDP---ASRARDTLIKET 119
Query: 146 --SDSVTIHEVDAHNVVPVWVASEKLE--YSAKT--LRGKINKLLPEYLIDYPMLEQPIE 199
S V H + + W K Y T R + +P L+ + P E
Sbjct: 120 LKSQGVAAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAVRGRDVPGLLVAPGTIPAP-E 178
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+W + Q W +AA +R+GA V C GE+AA + L D F+ + Y
Sbjct: 179 QWPNSDQLDTWK--LAAAMRRGAPVLAAH-CRVGEEAAQDRL----DEFIETGIARYQDL 231
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
R+ P SGLS L +G+IS QR +A +TFL+E +V RE A +
Sbjct: 232 RDLPAV-DGTSGLSENLAWGEISPQRMWHRGAEAMAQGAAGAETFLKE-VVWREFAYHLM 289
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
F+ P+ L +W R+ + A + E +++ +T +A+ E+ GKM
Sbjct: 290 FHTPHI--LTKSW---REEWQSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKM 344
Query: 380 HGFMRM 385
H RM
Sbjct: 345 HNRARM 350
>gi|255671679|gb|ACU26439.1| deoxyribodipyrimidine photolyase [uncultured bacterium
HF186_75m_14K15]
Length = 83
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 387 WAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW-KERPVFGK 445
WAKKILEWT P AL I LN++Y +DGRDPN Y G W + G D+ W ERP+FGK
Sbjct: 2 WAKKILEWTEHPRVALDTLIELNNRYALDGRDPNSYSGIFWCL-GRFDRAWGPERPIFGK 60
Query: 446 IRYMNYSGCKRKFDVDGYIA 465
IRYM+ RK V YIA
Sbjct: 61 IRYMSSENTARKVRVGAYIA 80
>gi|159488927|ref|XP_001702452.1| CPD photolyase type II [Chlamydomonas reinhardtii]
gi|158271120|gb|EDO96947.1| CPD photolyase type II [Chlamydomonas reinhardtii]
Length = 894
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 104/252 (41%), Gaps = 62/252 (24%)
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
+ Y RN+ ++ S +S YLH+G +S R EA + FL+EL+V R
Sbjct: 663 VGRYAASRNDAMQRGGTSRMSAYLHWGMVSPFRVTREAAASGG---SGCAKFLDELLVWR 719
Query: 313 ELADNFCFYQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT---------- 361
ELA +FCF++ DSL WA+ +L HASD R + + +Q E T
Sbjct: 720 ELAYSFCFHRCGQLDSLAVLPRWAQDTLAAHASDPRA-VRSLQQLETGTTGRVTLFVNYL 778
Query: 362 -------------------------ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTT 396
D W+A+Q ++ +G++H +RM W K L W
Sbjct: 779 LTTAFAPIWKMSSFGFISNRPGLPAGDTFWDAAQRQLSTHGELHNNVRMTWGKAPLAW-- 836
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE---RPVFGKIRYMNYSG 453
+ +DG DP Y G +W G+ D G K+ P+ G +R S
Sbjct: 837 ---------------FALDGCDPASYGGVLWCF-GLFD-GPKDPASTPITGTLRRRPTSS 879
Query: 454 CKRKFDVDGYIA 465
R+ D Y A
Sbjct: 880 HARRLDPAAYEA 891
>gi|224014102|ref|XP_002296714.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968569|gb|EED86915.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 458
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 31/215 (14%)
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE------------- 299
L Y RN+ S +S YL+ G +S R +A++ +K E
Sbjct: 143 LNKYGKVRNDAKNVNGSSRMSAYLNLGIVSIFRVVSDAKRIQKQQNEKKGTMSKWDNKNK 202
Query: 300 -AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
D F EE+I RE + F + +YD + W+ + L D Y +
Sbjct: 203 SGGDKFEEEIIKFREFSYAHAFSRLDYDDVTTLPRWSVQCLNDAFGASYGGSYNLSELAS 262
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEW-----------TTGPEEALAIAIY 407
+T D WNA Q +V G++H +RM W K ++EW +T L Y
Sbjct: 263 GKTNDVKWNAMQQYLVRTGELHNNVRMTWGKTVVEWRAERSANNDAYSTPAHLLLRTLCY 322
Query: 408 LNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPV 442
LND+Y +DG P Y G +W + GW ++P
Sbjct: 323 LNDRYALDGLSPPSYSGLLWCV------GWTDKPT 351
>gi|15636683|gb|AAL02137.1| deoxyribodipyrimidine photo-lyase [Branchiostoma belcheri]
Length = 202
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
G +VYWM RDQRV+DNWAL++A A K+ VP+ V F L +FL A R GFML+GL
Sbjct: 119 GGIVYWMSRDQRVQDNWALLYAQQLAMKHQVPLYVCFCLVPKFLEASIRHYGFMLKGLEE 178
Query: 89 LQRNIEETFQILFFLFQGEAEDNIP 113
++R + ++ I F L G A D +P
Sbjct: 179 VEREL-QSLDISFHLLTGYAVDVLP 202
>gi|399992584|ref|YP_006572824.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398657139|gb|AFO91105.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 479
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 155/373 (41%), Gaps = 48/373 (12%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPV--AVAFNLFDQFLGAKAR-QLGFMLRG 85
P+++W+ RD R+ DN A+ A VPV F D+ LGA R +LG G
Sbjct: 9 APIIWWVRRDLRLADN----PALAAAVAAGVPVIPVFIFETLDEDLGAAPRFRLGL---G 61
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICN 143
L L + +E+ L L +G A++ + + E GA + + P + I R
Sbjct: 62 LAHLAKELEQRGARLI-LRRGPAQEVLTQLITETGAGAVHWTRAYDP-QAIARDTGIKEQ 119
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-----------LIDYP 192
+ H + W + +T G + ++ Y LI P
Sbjct: 120 LKGQGIAAKSFGGHLLFEPW--------TVETKTGGMYRVYSPYWKSVRDRDVDGLIAAP 171
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
W + W +AA +R+GA+V +C GEDAA E L FL R
Sbjct: 172 SRIPAPAHWPTSDDLDSWQ--MAAAMRRGADV-VAQYCRVGEDAAQERLAE----FLDTR 224
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
+ +Y DR+ P A SGLS L +G+IS +R +AR+ + FL+E IV R
Sbjct: 225 VADYKQDRDFPAV-DATSGLSENLAWGEISPRRMWHHGLEARRAGKSGAEHFLKE-IVWR 282
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
E A + F+ P+ + EW + + DK + + + QT +A+ E
Sbjct: 283 EFAYHLMFHTPHILTRNWRPEWEHFNWSERDDDK------VDAWRRGQTGYNFVDAAMRE 336
Query: 373 MVYNGKMHGFMRM 385
+ GKMH RM
Sbjct: 337 LYVTGKMHNRARM 349
>gi|194336953|ref|YP_002018747.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1]
gi|194309430|gb|ACF44130.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1]
Length = 104
Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR+L + G V+YWM RDQRVR NWAL+ A +A P+ V F L
Sbjct: 2 IDPRRIRLLNEKH--DGEGAVIYWMSRDQRVRHNWALLFARRKAELLQQPLVVLFTLAPT 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE 107
FLGA R FML+GLR ++ ++ +T I F L Q +
Sbjct: 60 FLGAPLRHYDFMLKGLREVEADL-KTLNIPFLLLQSQ 95
>gi|400754263|ref|YP_006562631.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
gi|398653416|gb|AFO87386.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
Length = 479
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 155/371 (41%), Gaps = 44/371 (11%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLR 87
P+++W+ RD R+ +N + A A +PV + F+ D+ LGA R +LG GL
Sbjct: 9 APILWWVRRDLRLAEN-PALDAAVAAGAPVIPVFI-FDTLDEDLGAAPRFRLGL---GLA 63
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRV 145
L + +E L L +G A++ + + E GA + + P + I R
Sbjct: 64 HLAKGLERRGARLI-LRRGPAQEVLTQLITETGAGAIHWTRAYDP-QAIARDTAIKKQLK 121
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-----------LIDYPML 194
+ H + W + +T G + ++ Y LI P
Sbjct: 122 GQGIAAKSFGGHLLFEPW--------TVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSR 173
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
+W + W +AA +R+GA+V +C GEDAA L FL R+
Sbjct: 174 IPAPAQWPASDDLDSWQ--LAAGMRRGADV-VAQYCRVGEDAAQARLAE----FLDTRVA 226
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
+Y DR+ P A SGLS L +G+IS +R +AR+ + FL+E IV RE
Sbjct: 227 DYKQDRDFPAV-DATSGLSENLAWGEISPRRMWHHGLEARRAGKSGAEHFLKE-IVWREF 284
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
A + F+ P+ + EW + D+ + + + QT +A+ E+
Sbjct: 285 AYHLMFHTPHILTRNWRPEWESFRWSEQDDDR------VDAWRRGQTGYNFVDAAMRELY 338
Query: 375 YNGKMHGFMRM 385
GKMH RM
Sbjct: 339 VTGKMHNRARM 349
>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
Length = 474
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 153/363 (42%), Gaps = 30/363 (8%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLRL 88
PV++W+ RD R+RDN AL A +A +P+ + + ++ LGA + +LG GL
Sbjct: 6 PVIWWIRRDLRLRDNPAL-RAAQEAGGPIIPLYI-HDAQEEALGAAPKFRLGL---GLER 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
+ +EE L + +G+A + + + E GA ++ + P R K K + S
Sbjct: 61 FAKTLEEKGSRLI-VRRGDALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKAS 119
Query: 147 DSVTIHEVDAHNVVPVWVASEK----LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT 202
D + + W K + + + E L P E W
Sbjct: 120 D-IKAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTRDVAELTAAPSRLAAP-ESWP 177
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
D + AA+ R GA V + C GEDAA+ L D FLT+R+ NY R+
Sbjct: 178 SGEALADL-GMDAAMRRGGAIVAQH--CRVGEDAALAQL----DDFLTERVSNYKAHRDF 230
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
P + A S LS L +G+IS R +A + + FL+E +V RE A +
Sbjct: 231 PARA-ATSELSENLAWGEISPHRMWHLGAQAMQDGQPGAEHFLKE-VVWREFAYHLMHRS 288
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P + EW +D D +++++ QT +A+ E+ GKMH
Sbjct: 289 PRILTRNWREEWDGFPWQDDPGD------ALQRWQQGQTGYDFVDAAMRELYVTGKMHNR 342
Query: 383 MRM 385
RM
Sbjct: 343 ARM 345
>gi|70939369|ref|XP_740236.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56517812|emb|CAH84909.1| hypothetical protein PC301304.00.0 [Plasmodium chabaudi chabaudi]
Length = 204
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKN--NVPVAVAFNLFDQFLGAKARQLGFMLRG 85
+ V+ + RD R+ DNW++I+A D A KN N+ N +QF R + L+
Sbjct: 30 KKNVLLLLTRDFRIADNWSIIYAHDLAKKNKCNLLACTYINRKEQF---TERHINIKLKV 86
Query: 86 LRLLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
L+ N+EE F+ L F++ D F+R +V DF PL ++ + +
Sbjct: 87 LK----NLEEEFKKLNIPFYVIPIFMIDEFMEFLRIQEIKTVVCDFHPLEYQKQFVENLV 142
Query: 143 NRVSDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
+ + + + +VD+HN++P+W+ S+ E S +T++ KI L +LI+Y LE+
Sbjct: 143 HMSNKKKIKVLQVDSHNIIPLWMTSKMEESSTRTIKPKIQAHLSSFLIEYIKLER 197
>gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601]
gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601]
Length = 473
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 155/364 (42%), Gaps = 31/364 (8%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W+ RD R+ D+ A +H ++ + +PV + + DQ A +LG GL
Sbjct: 6 PIIVWIRRDLRLSDH-ATLHEAGKSGRPVIPVFIRDHTVDQLGAAPKWRLGL---GLGCF 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICNRV 145
+ E L L G A + + + E GA + D + + K + +R
Sbjct: 62 GEALAEKGSRLI-LRAGPAREVLDALIDETGAGAVWWQRAYDPASVERDTAVKSALKDRE 120
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLE--YSAKT--LRGKINKLLPEYLIDYPMLEQPIEKW 201
D+ + H + W K Y T R ++ +PE L L P E W
Sbjct: 121 IDARSFA---GHLLFEPWTVETKQGGFYKVYTPFWRAVCDRDVPEPLPAPSKLAAP-ESW 176
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+ DW + +R+GA V E + + GE AA L F + ++ +Y RN
Sbjct: 177 PESDALDDWG--LGDAMRRGAAVVE-PYVQLGERAAQARLGA----FTSGKIADYDKGRN 229
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
+ S LS L G+IS +C A +A+ E +T+ +EL V RE A + ++
Sbjct: 230 L-VAEDGCSTLSENLALGEISPAQCWHAAMRAKDAGKEGAETWAKEL-VWREFAYHLLWH 287
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P+ EWA + + ++R+ + +++A+T P +A+ EM G+MH
Sbjct: 288 TPHLAESNWREEWA--AFPWNEDERRKEVIA---WKRARTGIPFVDAALREMYVTGRMHN 342
Query: 382 FMRM 385
RM
Sbjct: 343 RARM 346
>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
Length = 474
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 119/468 (25%), Positives = 194/468 (41%), Gaps = 70/468 (14%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLR 84
R PV++W+ RD R+ DN AL A ++ +PV + + D+ LGA + +LG
Sbjct: 2 SSRAPVIWWIRRDLRLCDNPALTAAA-ESGAPVLPVYI-LDEQDEALGAAPKFRLGL--- 56
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKIC 142
GL + + + L L +G+A + + + E GA + + P + IRR +
Sbjct: 57 GLDHFGQELAKAGSCLI-LRRGKALRVLQDLIEETGAGAVHWSRLYDP-QAIRRDSEIKQ 114
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLE-----YSA--KTLRGK-INKLLPEYLIDYPML 194
V + + W K Y+ K +R + ++ LLP P
Sbjct: 115 TLKEQGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVDSLLPA-----PGK 169
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
+ W + DW +AA +R+GA+V +C GE AA+E L + FL +
Sbjct: 170 IAAPDNWPASEDLADWR--MAAAMRRGADV-VARYCRVGETAALERL----ETFLEDSVD 222
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
Y R+ P + A SGLS L +G+IS R + A + + + FL+E IV RE
Sbjct: 223 AYKARRDYPAE-DATSGLSENLAWGEISPHRMWHQGSAAMERGSQGAEHFLKE-IVWREF 280
Query: 315 ADNFCFYQPNY--DSLKGAWE---WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
A + + P+ +S + W+ W++K + +++ T +A+
Sbjct: 281 AYHLMYNSPHILTESWREEWQEFPWSQKITPQ-----------VQAWQRGLTGYGFVDAA 329
Query: 370 QMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
E+ GKMH RM + K ++ W G + + D +D + +G
Sbjct: 330 MRELYVTGKMHNRARMIVASFLTKHLMTHWKIGMD-------WFADTL-VDWDPASNALG 381
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
W V G P F R N SG KFD +G AY R +
Sbjct: 382 WQW----VAGSGPDAAPFF---RVFNPSGQLEKFDPEG--AYTSRWIA 420
>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
Length = 473
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 151/365 (41%), Gaps = 29/365 (7%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+ P++ W RD R+ D+ AL A + A + +PV + D A +LG G+
Sbjct: 4 KSPILLWYRRDLRLSDHPALSAAAN-AGRPVIPVFIKDKSVDALGAAPKWRLGL---GIG 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICN 143
L ++E L L +G+A + + ++E GA + + D ++ + K+ +CN
Sbjct: 60 ALADSLEGVSSRLI-LREGDALEVLQALIKETGAGTVYWSRLYDPDSVKRDSKIKETLCN 118
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP---EYLIDYPMLEQPIEK 200
D + H + W K K N + E + P E
Sbjct: 119 ---DGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPES 175
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W + WD + A + +GA+V C GE AA L F+ + +Y R
Sbjct: 176 WPDSDALDGWD--LGAAMDRGADVVRPFVC-LGEKAAQSRLGA----FMAHGVADYKQTR 228
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
+ P S LS L G+IS +C A++A + +TFL+EL V RE A +
Sbjct: 229 DIP-GTDGTSNLSENLSLGEISPHQCWHAAQRALHDGKQGAETFLKEL-VWREFAYHLMH 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P L W + + ++R + + +++ +T +P +A+ E+ G+MH
Sbjct: 287 HTPRM--LTDNWREEWDAFPWNEDERRAEV---KAWKQGRTGEPFVDAAMRELYVTGRMH 341
Query: 381 GFMRM 385
RM
Sbjct: 342 NRGRM 346
>gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase [Roseobacter denitrificans OCh
114]
gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
denitrificans OCh 114]
Length = 472
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 157/383 (40%), Gaps = 40/383 (10%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF--LGAKAR-QLGFMLRGL 86
PV+ W RD R+ D+ A+D A K+ PV F DQ LGA R +LG G+
Sbjct: 5 PVLVWFRRDLRLSDH----PALDAAVKSGNPVIPVFIHDDQVETLGAAPRWRLGL---GI 57
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
L +E L +G A + + + E GA + + P R + K +
Sbjct: 58 GHLSETLE-GLNSRLILRRGPALETLRTLILETGAGAVFWSRLYDPAAVERDTEVKAALK 116
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-----LEQPIE 199
D + H + W K K N ++ +D P+ ++ P
Sbjct: 117 -QDGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWN-MVKNRDVDAPLSAPSRIDAPA- 173
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
W G+ DW+ + A + +GA V + GE AA L + F+ K + Y T
Sbjct: 174 AWPGSDTLSDWN--MGAAMDRGAAV-VAPYVRLGEAAAQTRL----NTFIDKIVAGYDTT 226
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
R+ P SGLS L G+IS +C +AR+ +TFL+EL V RE A +
Sbjct: 227 RDQPAI-DGTSGLSENLALGEISPHQCWYAGLRAREEEKPGAETFLKEL-VWREFAYHLM 284
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ P L G W ++ ++ E ++++ +T +A+ EM G+M
Sbjct: 285 HHTPRI--LTGNW---KEDWDSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRM 339
Query: 380 HGFMRM----YWAKKIL-EWTTG 397
H RM Y K +L +W G
Sbjct: 340 HNRGRMIVASYLTKHLLSDWKIG 362
>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
Length = 472
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 120/472 (25%), Positives = 192/472 (40%), Gaps = 60/472 (12%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+ P++ W RD R+ D+ AL A D A++ +PV + L + A +LG + L
Sbjct: 3 KSPILMWFRRDLRLGDHEALTAACD-ADRPVIPVFIYDELTESMGAAPKMRLGLSVADL- 60
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRV 145
++ E L L +G+A D + +++ GA + + P + R K +
Sbjct: 61 --AASLNEKGSKLI-LRRGKALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVKAALK- 116
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLE-----YSA--KTLRGKINKLLPEYLIDYPMLEQPI 198
D +T H + W K+ Y+ K++RG +P L + P
Sbjct: 117 DDGITAESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGND---VPAALPTPGTIPVP- 172
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ W + DW + A + +GA+ + C GE AA L F+ + NY
Sbjct: 173 DSWPKSDDIADWQ--MDAAMHRGADTLKSH-CTVGEAAASHRLGA----FIANHVANYVK 225
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
+R+ P SGLS L +G+IS ++C +A +TFL+EL V RE A +
Sbjct: 226 NRDLPAV-DGTSGLSENLTYGEISPRKCWHSGWQALNDGKGDAETFLKEL-VWREFAYHL 283
Query: 319 CFYQP--NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
++ P D+ K W+ + E + + +++ +T +A+ EM
Sbjct: 284 AYHTPRITTDNWKEDWD-------AFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVT 336
Query: 377 GKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
G MH RM Y K +L W G + D ID + +G WS
Sbjct: 337 GTMHNRGRMIVASYLTKHLLCHWKIGMN-------WFADCL-IDWDPCSNAMGWQWSAGS 388
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR-IVGGTKKRRADSL 482
D P F R N KFD D AY+K+ I GTK+ A +L
Sbjct: 389 GPDA----TPYF---RVFNPVTQLDKFDKDR--AYIKKWIAEGTKRPSATAL 431
>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
Length = 481
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 162/400 (40%), Gaps = 82/400 (20%)
Query: 21 QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---AR 77
G + G V+ W +D R+ DN AL HA D PV V + D+ G + A
Sbjct: 5 SGDSEASPGAVIVWFRKDLRIADNPALRHAADSGR----PV-VCLYILDETPGVRPMGAA 59
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV------------ 125
L ++ + L+ L + +E+ L L +G A D + + E GA+ +V
Sbjct: 60 SLWWLDKSLKSLAQELEKLGNRLV-LRKGVAADVLDALIAETGATGVVWNRLYDKASVDR 118
Query: 126 --TDFSPLREIR-RCKDKICNRVSDSVTIHEVDAHN---VVPVWVASEK------LEYSA 173
T + L+E C+ +++ T+ P W A+ + +E +
Sbjct: 119 DATIKARLKEAGVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPAP 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
K LR +D + +P+ W DW KG ++ G E+G
Sbjct: 179 KVLR----------CLDKAVRSEPLAAWDLHPTRPDWS--------KGFDLWTPG--EAG 218
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
A + D FL+ + Y R+ P P A S LSP+LHFG+I ++ L AR A
Sbjct: 219 ARARL-------DAFLSGPITGYGEKRDIPSAP-ATSRLSPHLHFGEIGPRQVWLAARNA 270
Query: 294 RKL--CPEA-IDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASD 345
+ P A D FL EL RE + F+ P N+ + WA KDHA+
Sbjct: 271 AEAGDIPTAEADKFLSEL-GWREFNHSILFHWPQLPARNFKPEFDGFPWA----KDHAA- 324
Query: 346 KREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
E + + +T P+ +A E+ G MH +RM
Sbjct: 325 -------FEAWTRGETGYPIVDAGMRELWTTGFMHNRVRM 357
>gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
Length = 475
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 109/468 (23%), Positives = 185/468 (39%), Gaps = 53/468 (11%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W+ RD R+ D+ A +H ++ + +PV + + D A +LG +GL
Sbjct: 8 PIIVWIRRDLRLTDH-AALHEAGRSGRPVIPVFIRDHGVDSLGAAPKWRLG---QGLGHF 63
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICNRV 145
+ + + L L G A + + + E A + D + + K + +R
Sbjct: 64 AKLLGDKGSRLV-LRAGPAREVLEALIDETAAGAVWWQRAYDPAAIERDTAVKAALKDRG 122
Query: 146 SDSVTIHEVDAHNVVPVWVASEK----LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
+D + H + W K + + R + +PE L P P E W
Sbjct: 123 TD---VRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVPEPLA-APSKLTPPESW 178
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
DW + A +R+G V E GE+ A L F+ + Y D
Sbjct: 179 PEGEALDDWQ--LGAAMRRGGPVVEAH-VRLGEETAQARLGA----FMANGVDGY-KDGR 230
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
N + SGLS L G+IS +C A +AR +T+ +EL V RE A + ++
Sbjct: 231 NLVAEDGCSGLSENLSLGEISPAQCWHAAMRARDAGKAGAETWAKEL-VWREFAYHLMWH 289
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P+ L+ W K+ + ++R + +++A+T P +A+ EM G+MH
Sbjct: 290 TPHL--LEDNWREEWKAFPWNKDERRREVIA---WKRARTGIPFVDAALREMYVTGRMHN 344
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM Y K ++ W G + + D D + +G W+ D
Sbjct: 345 RARMIVASYLTKHLMCHWKIGLD-------WFEDCL-TDWDPASNALGWQWTAGSGPDAA 396
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVS 484
P F R N + KFD D AY++R + + D+ +S
Sbjct: 397 ----PYF---RVFNPITQREKFDPD--RAYIRRWIAEGEGTPTDTALS 435
>gi|219127169|ref|XP_002183813.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404536|gb|EEC44482.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 495
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 41/266 (15%)
Query: 172 SAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI---------DW-DSIIAAVLRKG 221
+A RG++ ++ E D P L P + S +W DS I A R+
Sbjct: 225 TAPKRRGEVMGVVEEGHFDAPTLSMPSPADFLSNPSFASLYSVLPAEWKDSKIPAPGRRP 284
Query: 222 ---AEVPEIGWCE------SGEDAAM----EVLKGSKDG------FLTKRLKNYPTDRNN 262
A++ I C+ SG D+++ + G++ G FL L Y RNN
Sbjct: 285 WSVADLTSIADCKAWALQWSGADSSVAPCVQTHGGARAGMKRWTVFLNHHLVKYARTRNN 344
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
+P A+S LS YL+ G IS + + + A + FL+E++ RE+ CF
Sbjct: 345 ITQPHAVSRLSCYLNLGVISIFQVLFDLYNRDR---NATEKFLDEIVKWREIGYVHCFAF 401
Query: 323 PN-YDSLKGAWEWARKSLK-----DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
P+ Y W+R L+ + S+ + T+ + + + D +W+A Q ++
Sbjct: 402 PHSYAKPDVLPSWSRIHLERSCAASYGSNSSWSVDTRRRLLEGRFGDEVWDAMQTYLIET 461
Query: 377 GKMHGFMRMYWAKKILEW---TTGPE 399
G++H RM W K I+ W + GP+
Sbjct: 462 GELHNNARMTWGKAIVHWLKVSVGPK 487
>gi|339503748|ref|YP_004691168.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
gi|338757741|gb|AEI94205.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
Length = 472
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 114/468 (24%), Positives = 181/468 (38%), Gaps = 53/468 (11%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W RD R+ D+ AL AV N +PV + + + A +LG G+ L
Sbjct: 5 PVLVWFRRDLRLSDHPALNAAVKSGNPV-IPVFIHDDQVETLGAAPKWRLGL---GIDHL 60
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGA-SLLVTDFSPLREIRRCKDKICNRVSDS 148
+E L +G A + + V+E GA ++ T + R + D
Sbjct: 61 SETLE-GLNSRLILRRGPALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQDG 119
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI-----EKWTG 203
+ H + W K K N ++ +D P L P + W
Sbjct: 120 IDARSFGGHLMFEPWTVETKTGGFYKVYTPFWN-MVKNRDVDAP-LSAPAKIPAPDAWPS 177
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ DW+ + A + +GA V + GE AA L F+ K + Y T R+ P
Sbjct: 178 SEALSDWN--MGAAMDRGAAV-VAPYVRLGEAAAQTRLST----FIDKIVARYDTTRDQP 230
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
SGLS L G+IS +C +AR+ +TFL+EL V RE A + + P
Sbjct: 231 AV-DGTSGLSENLALGEISPHQCWHAGLRARQEGKPGAETFLKEL-VWREFAYHLMHHTP 288
Query: 324 NY--DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
D+ K W+ ++ E ++++ +T +A+ E+ G+MH
Sbjct: 289 RILTDNWKEGWD-------SFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHN 341
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM Y K +L +W G + + ID + +G WS D
Sbjct: 342 RGRMIVASYLTKHLLSDWKIG--------LKWFEGCLIDWDPASNAMGWQWSAGSGPDA- 392
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVS 484
P F R N KFD D YVKR + ++ +++ +S
Sbjct: 393 ---TPYF---RVFNPVTQLDKFDKD--RQYVKRWIAQGRRAPSETALS 432
>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
Length = 473
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 150/365 (41%), Gaps = 29/365 (7%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+ P++ W RD R+ D+ AL A + A + +PV + + A +LG G+
Sbjct: 4 KSPILLWYRRDLRLSDHPALSAAAN-AGRPVIPVFIKDKSVNALGAAPKWRLGL---GVG 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICN 143
L ++E L L +G+A + + ++E GA + + D ++ + K+ +CN
Sbjct: 60 ALADSLEGVSSRLI-LREGDALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIKETLCN 118
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP---EYLIDYPMLEQPIEK 200
D + H + W K K N + E + P E
Sbjct: 119 ---DGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPES 175
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W + W + A + +GA+V C GE AA L F+ + +Y R
Sbjct: 176 WPDSDALDGWG--LGAAMDRGADVVRRFVC-LGEKAAQSRLGA----FMAHGVADYKLTR 228
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
+ P S LS L G+IS +C A++A + +TFL+EL V RE A +
Sbjct: 229 DIP-GTDGTSNLSENLSLGEISPHQCWHAAQRALHDGKQGAETFLKEL-VWREFAYHLMH 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P L W + + ++R + + +++ +T +P +A+ E+ G+MH
Sbjct: 287 HTPRM--LTDNWREEWDAFPWNEDERRAEV---KAWKQGRTGEPFVDAAMRELYVTGRMH 341
Query: 381 GFMRM 385
RM
Sbjct: 342 NRGRM 346
>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
Length = 473
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 149/365 (40%), Gaps = 33/365 (9%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W RD R+ D+ AL AV + VP+ + + + A +LGF + L
Sbjct: 6 PIILWFRRDLRLGDHPALAAAV-ATGRPIVPLFIHDEVVEGQGAAPKMRLGFSVEAL--- 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
R++ T L L +G A D + + E GA + + PL + R K + D
Sbjct: 62 DRSLHGTGSRLV-LRRGRALDVLRKVITETGAGAVYWSRLYDPLSKERDTAVKSALK-DD 119
Query: 148 SVTIHEVDAHNVVPVWVASEK-------LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
VT H + W K K +RG LP LE P ++
Sbjct: 120 GVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVRGTD---LPVSTPAPNRLEAP-QE 175
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W + DW + A + +G +V +C GE AA+ L + F+ +R+ NY T+R
Sbjct: 176 WPASDALADW--AMDAAMMRGRDV-LAAFCTVGEQAALSRL----ETFINERVGNYQTNR 228
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
+ P + S LS L +G+I+ C A + FL+EL V RE A +
Sbjct: 229 DLP-RVDGTSRLSENLTYGEIAPLTCWHAGWAALNHGDADAEVFLKEL-VWREFAYHLVH 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P+ + +W + +D + +++ +T +A+ EM G MH
Sbjct: 287 HTPHITTDNWKPDWDGFAWNTDETDPK-----AVAWKQGRTGIRFVDAAMREMYVTGTMH 341
Query: 381 GFMRM 385
RM
Sbjct: 342 NRGRM 346
>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 474
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 179/465 (38%), Gaps = 60/465 (12%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML 83
+D K+ P++ W +D R+ D+ AL AV ++ + +PV + +L D A +L
Sbjct: 1 MDSKQSPILIWFRQDLRLSDHPALSAAV-RSGRPVIPVFIRDSLVDDLGAAPKWRLSL-- 57
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKI 141
GL L +N+E L L G A D + + E GA + + P I R
Sbjct: 58 -GLAALAQNLEHKGSKLV-LRSGPALDALKALIDETGAREVYWSRAYDP-DAIARDTHIK 114
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK- 200
+T H + W + K + K R D P + E+
Sbjct: 115 SVLTELGLTAKSFPGHLLFEPWTVATK---TGKPFRVFTPMWRAVAQRDVPSPDPAPERL 171
Query: 201 -----WTGTRQSIDWDSIIAAVLRKGAEVPEIG-WCESGEDAAMEVLKGSKDGFLTKRLK 254
W + DW + +R+GA + +G ++GE AA L D F+ +RL
Sbjct: 172 AAPPLWPASEHLDDWG--LGHAMRRGAGI--VGQHVQAGETAAEARL----DAFM-ERLD 222
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
YP R+ L S LS YL G+I + + A + D FL +L V RE
Sbjct: 223 AYPAQRDA-LADDGTSHLSEYLALGEIGPRTVWHRVKGAALIGSIGADAFLRQL-VWREF 280
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE--QFEKAQTADPLWNASQME 372
A + ++ P+ + EW E I T E + A+T P+ +A E
Sbjct: 281 AYHLMYHTPHLLTQNWRPEW-------DGFPWNEDIETPEVRAWMTARTGIPVVDAGLRE 333
Query: 373 MVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
M G+MH RM Y K ++ W G + + D +D + +G W
Sbjct: 334 MYVTGRMHNRARMIVASYLTKHLMTHWKIGMD-------WFADCL-VDWDAASNAMGWQW 385
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
V G P F R N KFD G AYV+R V
Sbjct: 386 ----VAGSGPDASPFF---RIFNPQTQAEKFDPTG--AYVRRWVA 421
>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
Length = 477
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 163/373 (43%), Gaps = 56/373 (15%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG-LRLLQRN 92
W +D R+ DN AL A ++ +PV + L DQ GA ++G R L +
Sbjct: 2 WFRQDLRLADNPALCAACERGEI--IPVYI---LDDQ--GAGQWKMGGASRWWLHFALAD 54
Query: 93 IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVT 150
+ + + ++QG+A + + + GA+ +V + + P R R K + S
Sbjct: 55 LNASLKQCLQIYQGDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESGL-- 112
Query: 151 IHEVDAHNVVPVWVASEKLE--------YSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT 202
+V + N +W + L+ ++ RG ++ + P +D P + ++ +
Sbjct: 113 --DVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPP---KTLKVFV 167
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTD 259
+ S++ D++ +P+I W ES + D + D F+ L++Y
Sbjct: 168 DSGDSLELDNL--------NLLPKIAWDESMKACWDISEAAAHARLDEFVMNELQDYREG 219
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC--PEAIDTFLEELIVRRELADN 317
RN P K + +S LSPYLHFGQIS A +A +++DTF+ EL RE +
Sbjct: 220 RNFPAK-QNVSRLSPYLHFGQISPNSAWYRAAEAGAFINNEQSLDTFMSEL-GWREFSYY 277
Query: 318 FCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
++ P N + + WA + +D ++ +++ +T PL +A E
Sbjct: 278 LLYHWPKLPTENLQTRFDLFPWANNTDEDLSA-----------WQQGKTGYPLVDAGMRE 326
Query: 373 MVYNGKMHGFMRM 385
+ G MH +RM
Sbjct: 327 LYSTGYMHNRVRM 339
>gi|213983211|ref|NP_001135721.1| CPD photolyase-like [Xenopus (Silurana) tropicalis]
gi|197246287|gb|AAI69177.1| Unknown (protein for MGC:189672) [Xenopus (Silurana) tropicalis]
Length = 157
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 15 RIRVLK-QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ + L +VYWM RDQRV+DNWA ++A A K +P+ V F L +FL
Sbjct: 76 RVRLISTEADLKDDAQGIVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLD 135
Query: 74 AKARQLGFMLRGLR 87
A R GFM++GL+
Sbjct: 136 ATIRHYGFMVKGLQ 149
>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|386350987|ref|YP_006049235.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|346719423|gb|AEO49438.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
Length = 478
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 118/480 (24%), Positives = 183/480 (38%), Gaps = 103/480 (21%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
PV+ W D R+ DN AL A+D + PV + F L D R LG ++ R
Sbjct: 4 PVLVWFRDDLRLADNPALCAALD----SGAPV-IPFYLLDDSTSDGHRPLGGATRWWLGR 58
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD----FSPLRE-----IR 135
L L +I + L L +GEA +P E A+ L + LR+ +
Sbjct: 59 SLTSLAESIAQRGGRL-VLRRGEALSAVPELAAETDAAALFANRLYGMDSLRDDDLFMVL 117
Query: 136 RCKDKICNRVSDSVTIHEVDAHNV---------VPVWVASEKLEYSAKTLRGKINKLLPE 186
R + R+ DS +H +A P W KTL ++ LP
Sbjct: 118 RVA-GLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFW----------KTLSATLDPGLPL 166
Query: 187 YLID-YPMLEQP------IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
D +P ++ P + W+ + DW + + G E+G A +E
Sbjct: 167 AAPDSFPPVDDPPPASDSLADWSLEPTTPDWAGGLRDTWQPG---------EAGAQARLE 217
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
F + +Y + R+ P KP S LSP+L FG+IS ++ AR
Sbjct: 218 A-------FFNGPVADYASGRDRPDKPLT-SKLSPHLRFGEISPRQVWTAARHHPPGG-- 267
Query: 300 AIDTFLEELIVRRELADNFCFYQPNY--DSLKG---AWEWARKSLKDHASDKREHIYTKE 354
+D FL EL RE + F P + LK A+ W ++ +E
Sbjct: 268 GMDAFLREL-GWREFCHHLLFQAPTMAEEPLKAEFLAFPW---------TEAKEIGPALA 317
Query: 355 QFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKY-- 412
++ +T P+ +A E+ + G MH +RM A ++ + L I +++
Sbjct: 318 AWQSGETGYPIVDAGMRELWHTGWMHNRVRMIAASFLI-------KDLLIPWQHGERWFW 370
Query: 413 --EIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
+D N G W + CG P F R N +FD +G AYV+R
Sbjct: 371 DTLVDACPANNAAGWQWVAGCGA-----DAAPFF---RIFNPVTQGERFDPEG--AYVRR 420
>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
Length = 492
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 154/399 (38%), Gaps = 65/399 (16%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R + K + D++ GP+V W+ D R+ DN AL A + N+ VP+ V D
Sbjct: 2 ARSKAPKSETADQETGPIVVWLRDDLRLDDNPALALAA-ETNRPIVPLVVLDEESDGVRA 60
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
++ L ++ L L +G+A+D + + + + GAS L + +
Sbjct: 61 LGGAHKWWLHHSLESFASSLRGKGSRL-TLRRGKAKDQVLDVIEKTGASALFFNRRYDQA 119
Query: 134 IRRCKDKICNRVSDSVTIHEVDA---HNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
R D I + D V++ A H+ V S K+++ P ID
Sbjct: 120 SRAVDDAIGEALGDQVSVERFTANLLHDPENVETTSGGYYKVFTPFWRKVSESGPRDPID 179
Query: 191 YP-MLEQP--------IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
P L+QP +E W DW IA W GE AA +
Sbjct: 180 PPDGLKQPDTFPQSDDLEDWELLPTKPDWSGGIADF-----------WT-PGEKAAHDRF 227
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKLCP 298
+ F L +Y R P S +SPYL +G+IS R A+ RK P
Sbjct: 228 E----TFCDDLLSDYHKGRERPYADDT-SRMSPYLRWGEISPYRLWHTAQAYANRRKTVP 282
Query: 299 -EAIDTFLEELIVRR----------ELAD-NFCFYQPNYDSLKGAWEWARKSLKDHASDK 346
EAI TFL+EL+ R LAD NF N+ +W ++K LK
Sbjct: 283 DEAIRTFLQELVWRDFNYHLLFHFGPLADKNFNDRFDNF-----SWRSSKKDLK------ 331
Query: 347 REHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ T P+ +A ++ G MH +RM
Sbjct: 332 --------AWQNGLTGYPIVDAGMRQLWKTGWMHNRVRM 362
>gi|345872727|ref|ZP_08824656.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
gi|343918048|gb|EGV28819.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
Length = 477
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 115/465 (24%), Positives = 191/465 (41%), Gaps = 73/465 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W RD R+ DN AL A+ + + +PV + + A ++ R L+ L
Sbjct: 3 AILWFRRDLRLDDNPALAAAL-ASGRPVLPVYIHAPHEEAPWAPGAASRWWLHRSLQSLD 61
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR-RCKDKICNRVSDSV 149
R++++ L+ + +G++ + V GA+ + ++ L + R R +D + +
Sbjct: 62 RSLQDRGSRLW-ITRGDSLAELRRIVAATGAAEV--HWNRLYDPRIRDRDAAIEQAIRAD 118
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLR------GKINKLLPEYLIDYPMLEQPIEKWTG 203
+H ++HN ++ E L + R K LP+ QP T
Sbjct: 119 GLH-CESHNGSLLFEPWEILTAQGQPYRVFSAFWRNATKRLPDI--------QP----TA 165
Query: 204 TRQSIDWDSIIAAV----LRKGAEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKR 252
+ I W I + ++ A PEI W GE AA ++ FL R
Sbjct: 166 PTKDIQWTRIEPPLPGLEIKDLALQPEIAWDAGLQETWTPGEQAAQDMAAH----FLDTR 221
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP--EAIDTFLEELIV 310
L Y DR+ P P S LSP+LHFG+IS +R LE ++R P + + F+ E +
Sbjct: 222 LSRYGEDRDRPDMP-GTSRLSPHLHFGEISPRRL-LELTRSRVADPSEDPAEPFIRE-VG 278
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE A + ++ P + +A K +D R + + + +T P+ +A
Sbjct: 279 WREFAHHLLYHFPQTPTEPLNPRFAEFPWKQDETDAR-----LQAWRQGRTGIPVVDAGL 333
Query: 371 MEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
E+ G MH +RM A +L W G A++ D +D + +G
Sbjct: 334 RELWDTGWMHNRVRMLVASFLTKNLLLPWQKG-------AVWFWDTL-VDADLASNTLGW 385
Query: 426 MWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
W+ CG P F R N ++FD DG AY+KR
Sbjct: 386 QWTAGCGA-----DAAPYF---RVFNPVLQGQRFDPDG--AYIKR 420
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 116/465 (24%), Positives = 182/465 (39%), Gaps = 68/465 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV--AFNLFDQFLGAKARQLGFMLRGLRL 88
V+ W RD R+ DN AL A+D + VPV + L D GA R ++ L
Sbjct: 5 VIIWFRRDLRLADNPALRAALDDDFDSIVPVYIHAPHELGDWAPGAAQRV--WLHDSLAA 62
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
+E L + +G+ D + + E GA+ + + + PL I R K +
Sbjct: 63 FSDALEALGSRL-VIRRGDTTDVLDTLIAESGATSVYWNRLYDPL-TIARDKKVKQHLAD 120
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML--EQPIEKWTGT 204
+ + AH + W K K K + +D P+ + E W+
Sbjct: 121 NDIETASFKAHLLHEPWTVETKQGGPYKVFT-PFWKAIKNRAVDTPLAAPDALPEVWS-- 177
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYP 257
I +S+ + LR P+IGW GED A E L + FL LK Y
Sbjct: 178 --RIGSESLASLELR-----PKIGWDRGIRETWSPGEDGAHERL----ETFLADALKTYD 226
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCA------LEARKARKLCPEAIDTFLEELIVR 311
R+ P +P S LSP+LH+G+I ++ L+ + K D+FL E I
Sbjct: 227 EARDEPARP-GTSYLSPHLHWGEIGPRQIVHRVEEWLDDHREIKTLRTQADSFLSE-IGW 284
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RE A + ++ P E KD + +++++ QT P+ +A
Sbjct: 285 REFAHHVLYHFPETPD-----EPLDARFKDFPWSGDDDAL--KRWQQGQTGIPMVDAGMR 337
Query: 372 EMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKY----EIDGRDPNGYVGCMW 427
E+ G MH +RM A + + L +A +++ +D N +G W
Sbjct: 338 ELWATGYMHNRLRMTVASFLT-------KNLRVAWQHGERWFWGTLVDADLANNTLGWQW 390
Query: 428 SI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ CG P F R N + +FD G YV+R V
Sbjct: 391 AAGCGA-----DAAPFF---RIFNPARQGERFDAKG--EYVRRWV 425
>gi|328544427|ref|YP_004304536.1| deoxyribodipyrimidine photolyase family protein [Polymorphum gilvum
SL003B-26A1]
gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum
SL003B-26A1]
Length = 480
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 173/463 (37%), Gaps = 76/463 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W +D R+ DN AL A A + +PV V D+ G LG R L
Sbjct: 3 TLVWFRQDLRIADNPALFEAA--ARGSVLPVFV----LDEGPGDNTHPLGAASRWW--LH 54
Query: 91 RNIEETFQIL--FFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
++E + L L G+ + IP R G + + + P +RR ++
Sbjct: 55 HSLEALARDLGRLVLLHGDPQRLIPELARAAGVGAVHWNRCYEP-HAVRRDTALKAALIA 113
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTL----RGKINKLLPEYLIDYPMLEQPIEKWT 202
V + +A + W K K R + + + L P LE +
Sbjct: 114 AGVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEIAAGQ-A 172
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGW---CESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
G R DW LR A GW GE A E L + FL L Y T
Sbjct: 173 GDRLD-DWR------LRPTAPDWAAGWRDLWHPGEAGAAERL----EHFLEAGLDGYATL 221
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEELIVRRELAD 316
R+ P +S LSP+LHFG++S ++ R A P D FL E I RE +
Sbjct: 222 RDRP-DLSHVSRLSPHLHFGEVSPRQVVARTRFAAGRTPGLERDADKFLAE-IGWREFSH 279
Query: 317 NFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
+ ++ P N+ S A+ W R S D A +++ QT P+ +A
Sbjct: 280 HLLYHFPRLPERNWKSTFDAYPW-RDSSGDLAV-----------WQRGQTGYPMVDAGMR 327
Query: 372 EMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
E+ G MH +RM A + L+W G + D +D N G
Sbjct: 328 ELWATGYMHNRVRMLAASFLVKHLRLDWRLG-------EAWFRDTL-VDADLANNAAGWQ 379
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
W V G P F R + G R+FD G AYV+R
Sbjct: 380 W----VAGSGADAAPYF---RIFSPVGQGRRFDPGG--AYVRR 413
>gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
Length = 463
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 155/365 (42%), Gaps = 35/365 (9%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFMLR 84
P + W+ RD R+ DN AL HA PV + L D+ +G +R ++
Sbjct: 4 PQILWLRRDLRMADNPALYHAAKAG-----PVVCVYVLDDEAPEHHRMGGASRW--WLHH 56
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPL--REIRRCKDK 140
L L +++ T L +G+A + + GA + T + P + ++ KD+
Sbjct: 57 SLESLSKSL-GTRNAKLILRRGDAVEELTTVANAVGADTIHANTHYEPWWRKAQKKLKDE 115
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
I ++ D V + A +V + + + + +L P ++ P +
Sbjct: 116 IDLQLYDGVYL--FPAGHVTT--GSGDPYKIYTPFYKALRQELPPRDVLPEPETLSSPDD 171
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W + + DW+ + G + E GEDAA E L +D + +Y R
Sbjct: 172 WPASDELADWNLLPTKPDWSGGIA---DFWEVGEDAAHERLSEWED-----HVADYEDKR 223
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N P + S LSP+LHFG+IS + + R + ++F ELI R A+ C
Sbjct: 224 NFPSVDKT-SRLSPHLHFGEISPVQVWHALKHKRS---DGWNSFESELIWRDYAANVICE 279
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
Y P Y S ++ + +D SD++ K ++++ +T P+ +A ++ G MH
Sbjct: 280 Y-PAYASENYREDYDKLEWRDPDSDEKAAKDLK-KWQEGKTGYPIVDAGMRQLWQTGWMH 337
Query: 381 GFMRM 385
+RM
Sbjct: 338 NRVRM 342
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 123/499 (24%), Positives = 195/499 (39%), Gaps = 65/499 (13%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
P A G+ R + G + + W RD R+ DN AL A+ Q +
Sbjct: 2 PQIASNSGKNREILSGQI------ALVWHRRDLRIDDNPALSEAIAQVGDQGK--VLGLF 53
Query: 67 LFDQFL----GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122
+FD + + ++ FML LR LQ N L F++ GE ++ + + S
Sbjct: 54 IFDPDILDDGVTEGSKVDFMLGCLRELQTNYRRLGSDLLFMY-GEPITSLCSLAKAINTS 112
Query: 123 LLV--TDFSPLREIRRCKDKICNRVSDSVTIHE-VDAHNVVPVWVASEKLE-YSAKT--L 176
L D P I+R ++ V + VD + P +A++ E Y T
Sbjct: 113 HLFFNQDVEPF-AIKRDREATQALQEIGVKVQSFVDIGLIAPDAIATQAGEPYKVYTPFW 171
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R +K P+ L D P +K TG + I LR+ + +I ESGE A
Sbjct: 172 RNWQSKPKPQPL-DAP------QKLTGLASYENLPVIPLPSLRELKFINDITLPESGESA 224
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
A+ +L+ DG + Y T+R+ P S LSP+L FG + +R +A A++L
Sbjct: 225 ALALLEAFCDG---NGILRYQTERDFPAH-AGTSTLSPHLRFGTVGIRRVWEKAIAAQQL 280
Query: 297 CPEAID----TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
D T ++ + RE + F+ P + GA+ R ++ D +
Sbjct: 281 VRSDEDLAGITIWQQELAWREFYQHVLFHFPALAT--GAY---RPQMQSFPWDDDPEKF- 334
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIY 407
E + T P+ +A+ ++ G MH RM A I+ W G Y
Sbjct: 335 -EAWCAGLTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQLGER-------Y 386
Query: 408 LNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
K +DG G WS G +P +R N + RK+D +G Y+
Sbjct: 387 FMQKL-LDGDLAANNGGWQWSASS----GMDPKP----LRIFNPASQARKYDPEG--EYI 435
Query: 468 KRIVGGTKKRRADSLVSGK 486
R + + L+SG
Sbjct: 436 LRWLPELQGLTTAELLSGN 454
>gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter arcticus 238]
gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter arcticus 238]
Length = 469
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 149/366 (40%), Gaps = 36/366 (9%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML-RGLRL 88
PV+YW+ RD R+ DN AL A + PV +A + D+ + F L G+R+
Sbjct: 3 PVIYWVRRDFRIGDNAAL----SAACASGRPV-IALFICDEVVEGHGAAPKFRLGEGVRV 57
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
+ E L L +G+A + V + G + + + P + R K +
Sbjct: 58 FGAALAEAGSRL-ILRRGDALAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAALK-D 115
Query: 147 DSVTIHEVDAHNVVPVWVASEK-------LEYSAKTLRGKINKLLPEYLIDYPMLEQPIE 199
D + + H + W K KT+RG+ P I P +
Sbjct: 116 DGIEVASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGR-EVATP---IAAPASVPVPD 171
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
W + Q DW + +R+G +V C GE+AA L D F+ +R+++Y T+
Sbjct: 172 VWPASDQLDDWK--LGGAMRRGRDVLAAHIC-VGEEAARSRL----DTFIDERVQSYQTN 224
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
R+ P S LS L +G+IS C A + F +EL V RE A +
Sbjct: 225 RDMP-SVDGTSRLSENLTYGEISPAVCWHAGWAAIHSGKGQAEVFCKEL-VWREFAYHLV 282
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ P+ + W+ + + D E + +++ +T P +A+ EM +G M
Sbjct: 283 HHTPHI--VDRNWKEGWDAFPWNTDDTAEVM----AWKQGRTGVPFVDAAMREMYVSGTM 336
Query: 380 HGFMRM 385
H RM
Sbjct: 337 HNRGRM 342
>gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
Length = 473
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 149/365 (40%), Gaps = 31/365 (8%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
P + W+ RD R+ D+ AL A+ +PV + + A +LG L L
Sbjct: 5 APSIVWLRRDLRLADHPALCAAL-AGGGAVIPVFIHDESVEALGAAPKWRLGLSLASL-- 61
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
R++ L L +G A D + V E GA + + P + I R K
Sbjct: 62 -ARDLAACGSRLI-LRRGAALDVLRALVAETGAGAVHWSRLYDP-QSIARDKAVKSALRE 118
Query: 147 DSVTIHEVDAHNVVPVWVASEKL----EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT 202
V H + W K + R ++ + L + P + W
Sbjct: 119 AGVDAQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAP-KVWP 177
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
+ DW + A + +GA+V + + GE AAME L DG + + Y RN
Sbjct: 178 ASDSLDDWQ--MGAAMYRGADV-CLPYQRVGEAAAMERLHAFADGAIAE----YQDARNF 230
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
P A S LS L +G+IS ++C ++A + +T+L+EL V RE A + ++
Sbjct: 231 PAV-DATSALSENLTYGEISPRQCWHAGQRALHGGAKGAETWLKEL-VWREFAYHLMYHT 288
Query: 323 PNYDSLKGAW--EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
P+ L G W +W A D E I +++ +T +P +A+ EM GKMH
Sbjct: 289 PHI--LSGNWRTDWDAFPWSTDA-DHPEVI----AWKQGRTGEPFVDAAMREMYVTGKMH 341
Query: 381 GFMRM 385
RM
Sbjct: 342 NRARM 346
>gi|375142760|ref|YP_005003409.1| deoxyribodipyrimidine photolyase [Mycobacterium rhodesiae NBB3]
gi|359823381|gb|AEV76194.1| deoxyribodipyrimidine photolyase [Mycobacterium rhodesiae NBB3]
Length = 430
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 176/462 (38%), Gaps = 83/462 (17%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA--RQLGFMLRGLR 87
P + W RD R+ D AL+ A N+ +A + D L A + R+L ++ LR
Sbjct: 2 PTLLWFRRDLRLHDLPALLDAASADNE-----VLACYVLDPRLKASSGQRRLKYLYDALR 56
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRV 145
+++E+ ++ +G + IP V+ GAS + DF+P RR D + +
Sbjct: 57 ----DLDESLDGRLYVTRGRPDQRIPKLVKAIGASSVHVSGDFTPFG--RRRDDAVREAL 110
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM--LEQPIEKWTG 203
D V + E + P V+ ++ G K+ + + P
Sbjct: 111 GD-VPLEESGS----PYLVSPGRITKGD----GSPYKVFTPFYGSWRKHGWRSPASSGPK 161
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG------FLTKRLKNYP 257
+ ID D I AV E+P++ D +E+ G + F+ K L Y
Sbjct: 162 SATWIDPDDIPGAV-----EIPDL-------DVELELPAGERAAKRQWRSFVQKHLDGYA 209
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+RN P P A S +S +L FG I + A + + +L EL R
Sbjct: 210 ENRNRPDLP-ATSRMSAHLKFGTIHPRTMAADLGHSAD-----AQAYLRELAFRD----- 258
Query: 318 FCFYQPNYDSLKGA--WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
FY D + W W + K D + + ++ +T P+ +A ++
Sbjct: 259 --FYAAVLDQWPDSVWWNWNKSFDKIEVDDDEDARSLFDAWKHGRTGFPIVDAGMRQLAQ 316
Query: 376 NGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI- 429
G MH +RM A + L W G A + D+ +DG N G W+
Sbjct: 317 TGFMHNRVRMIVASFLVKDLHLPWQWG-------ARWFLDQL-VDGDMANNQHGWQWAAG 368
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
CG P F R N + KFD DG YV R V
Sbjct: 369 CGT-----DAAPYF---RVFNPTTQGEKFDPDG--EYVHRWV 400
>gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
Length = 473
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 119/472 (25%), Positives = 190/472 (40%), Gaps = 64/472 (13%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W RD R+ D+ AL A++ P+ F D G A + L L
Sbjct: 6 PILVWFRRDLRLADHPALCAAIEGGG----PIIPVFIHDDSVAGLGAAPKWRLGLSLASL 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
R++E+ L L +G A + + V E GA + + P + I R K D
Sbjct: 62 ARDLEDRGSRLI-LRRGSALEVLRALVAETGAGAVHWSRLYDP-QAIERDKAVKSALRED 119
Query: 148 SVTIHEVDAHNVVPVWVASEKL----EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG 203
H + W K + R ++ + L + P + W
Sbjct: 120 GAAAQSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAP-DMWPV 178
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ DW + A + +GAEV + + GE AAM+ L DG ++ +Y RN P
Sbjct: 179 SDGLDDWH--MGAAMVRGAEVC-LPYQRVGEAAAMDRLHAFTDGAIS----DYKDARNFP 231
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
A S LS L +G++S ++C ++A + + +L+EL V RE A + ++ P
Sbjct: 232 AV-EATSSLSENLTYGEVSPRQCWHAGQRALHAGAQGAEHWLKEL-VWREFAYHLMYHTP 289
Query: 324 NY--DSLKGAWE---WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
+ D+ + W+ W+ + DH +++ +T +P +A+ EM GK
Sbjct: 290 HILTDNWRTDWDAFPWSTDA--DHPD--------VIAWKQGRTGEPFVDAAMREMYVTGK 339
Query: 379 MHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDP-NGYVGCMWSI-CG 431
MH RM Y K ++ W G + A L D DP + +G W+ CG
Sbjct: 340 MHNRARMIVASYLTKHLMTHWKVGLDW---FADCLTDW------DPASNAMGWQWAAGCG 390
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR-IVGGTKKRRADSL 482
P F R N KFD DG AY +R I G + +A +L
Sbjct: 391 P-----DAAPYF---RVFNPETQLEKFDRDG--AYTRRWIAEGQGQPQATAL 432
>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
Length = 502
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 107/463 (23%), Positives = 180/463 (38%), Gaps = 56/463 (12%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
D GPV+ W+ +D R+RDN AL A + V + D F G A ++
Sbjct: 21 DLSEGPVLVWLRQDLRLRDNPALYAAANTGRSVIVVYLLPNRNDDWFPGGAASW--WLHH 78
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
L L N+ + L L G A + +C A+ + + R +K ++
Sbjct: 79 SLDALTTNLHKRHHQL-ILRSGSAATEMTRLAEDCKAAAVFWNRCYEPADRERDEKTADK 137
Query: 145 VSDS-VTIHEVDAHNVVPVWVASEKL--EYSAKTLRGKINKLLPEYLIDYPMLE--QPIE 199
++ + + ++ W S K Y T K + E+ P E + +
Sbjct: 138 LAQAGYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSRVEFASPLPAPESLKTPD 197
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+W + + DW + L E PE + GEDAA + FL + Y T+
Sbjct: 198 QWPDSEELADWK--LLPTLDWADEFPER--WKPGEDAAHAAWQ----KFLDDNIAEYGTE 249
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEA-------RKARKLCPEAIDTFLEELIVRR 312
R+ P S LSP+LH+G+IS ++ EA + A + + ++ +L E I R
Sbjct: 250 RDVPSH-HGTSRLSPHLHYGEISPRQIYAEAVEKMNRKQTATESFEKNVNVYLSE-IGWR 307
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
E + ++ P+ R+ D + ++ + +++ QT P+ +A E
Sbjct: 308 EFGYHVLYHFPHTPENP-----LREKFADFNWETKKSWL--KAWQQGQTGYPIVDAGMRE 360
Query: 373 MVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
+ G MH +RM A + + W G + + D +D N +G W
Sbjct: 361 LWRTGWMHNRVRMIVASFLTKDLRIHWLEG-------SKWFWDTL-VDADLANNTLGWQW 412
Query: 428 -SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
S CG P F R N + KFD G Y++R
Sbjct: 413 ASGCGA-----DAAPYF---RVFNPTRQSEKFDPKG--NYLRR 445
>gi|402502124|ref|YP_006607782.1| DNA photolyase 1 [Apocheima cinerarium nucleopolyhedrovirus]
gi|284431214|gb|ADB84374.1| DNA photolyase 1 [Apocheima cinerarium nucleopolyhedrovirus]
Length = 123
Score = 62.8 bits (151), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM 82
+VYWM RD RV+DNWA+I+A + AN N+P+ V F L +FL A RQ F+
Sbjct: 71 IVYWMSRDSRVQDNWAMIYAQELANAQNLPLYVVFCLTKRFLNASLRQFHFL 122
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 151/391 (38%), Gaps = 49/391 (12%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---FMLRGL 86
PV+ W +D R++DN A A++ + P+ F L D G R ++ L
Sbjct: 5 PVILWFRQDLRLQDNPAYHAALESGS----PILPVFILDDDNAGLWKRGAASRWWLYHSL 60
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
L +++ T I F+G+A IP V A + + + P R R K K
Sbjct: 61 SSLNKSLNGTLAI----FRGDATKIIPELVEAACAHAVFWNRCYEPWRIARDSKIKTALE 116
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL-----RGKINKLLPEYLIDYPMLEQPIE 199
S S+ + +A + W S+ K +G + + P + P
Sbjct: 117 QS-SIAVKSSNASLLYEPWTVSKDDGTPYKVFTPFFRKGCLGRGEPPVPLGLP--HHVPT 173
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD---GFLTKRLKNY 256
+ +QS+ D + +P I W + D G+++ FL LK Y
Sbjct: 174 FFPRLKQSLHIDDLDL--------LPSIKWDKGFHDIWTPGEHGARERLGQFLDHGLKGY 225
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI---DTFLEELIVRRE 313
RN+P + +S LSP+LHFG+IS + R A + P D FL EL RE
Sbjct: 226 KEGRNHPDR-ENVSRLSPHLHFGEISPRTAWHAVRHAMEADPTIETDGDCFLSEL-GWRE 283
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
+ + + P+ + + DK + Q K T P+ +A ++
Sbjct: 284 FSYSLLYTHPDLPTQP-----LQHKFAGFPWDKNDKALRAWQMGK--TGYPIVDAGMRQL 336
Query: 374 VYNGKMHGFMRMYWAK-----KILEWTTGPE 399
G MH +RM A +L WT G E
Sbjct: 337 WQTGWMHNRVRMIVASFLIKDLMLPWTAGEE 367
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 111/469 (23%), Positives = 183/469 (39%), Gaps = 85/469 (18%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLR 87
+++W RD R+RDN AL+ A D + +PV F D LG A + F+L L
Sbjct: 2 LIHWFRRDLRLRDNTALLAAADASGGAVIPV---FIFDDAILGGRFASPARTQFLLDSLT 58
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPL---------REIRR 136
L + + + L +GE + +RE GA + D++P RE+R
Sbjct: 59 ALDGELR-SLGLHLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELRA 117
Query: 137 C-------KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
KD + +++ VT P AK R ++
Sbjct: 118 AGYRAESYKDAVIFEMNEVVTAAGQPYTVYTPY----------AKRWRARLES------- 160
Query: 190 DYPMLEQPIEKWTGTR--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
P+ Q + + T S ++ + VP E+ AA+E
Sbjct: 161 -EPVRVQGVPELTAIPLPASDPLPALNDLLPTAPTSVPRFATGETAARAALE-------H 212
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F+ + NY T R+ + S LSPYL FG +S ++C + AR A ++++ E
Sbjct: 213 FIHNAIANYATARDL-VAIAGTSRLSPYLRFGVLSPRQCVVAARAAP--SGPGPESWIGE 269
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
LI RE ++ P+ +L+G++ K + D + +++ +T P+ +
Sbjct: 270 LIW-REFYIQVLYHFPH--ALRGSF----KPVYDRIVWPNDPALFAA-WQQGRTGYPIVD 321
Query: 368 ASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
A+ ++ G MH RM A +++W G + + IDG
Sbjct: 322 AAMRQLQQEGWMHNRARMIVASFLTKDLLIDWRWGERHFMHLL--------IDGDPAANN 373
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G W+ G +P F R N +KFD DG AYV+R V
Sbjct: 374 GGWQWAAG----TGTDAQPYF---RIFNPVSQGQKFDPDG--AYVRRYV 413
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 108/482 (22%), Positives = 179/482 (37%), Gaps = 71/482 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+++W RD R+ DN AL A + + +PV + L A + F++ GLR L
Sbjct: 2 IIHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRALD 61
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRRCKDKICNRVSDS 148
++ + + GE + + V E GAS + D+SP R + +
Sbjct: 62 AQLQH-HGLRLIVRHGEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALHAAGC 120
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
H D P +++L + Y + +W
Sbjct: 121 AVQHTHDVAICPP-------------------DQILTKNATPYSVYTPYARQWRTWLAHA 161
Query: 209 DWDSIIAAVLRKGAEVP----------EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
D + A +L+ ++P +GE AA +L D F L+ Y T
Sbjct: 162 DLRPVAAPILQPCRDLPVSHAIPDLLAPHPLPPAGELAAQTIL----DEFTRTSLRTYAT 217
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
R+ P P S LSPYL FG I+ ++C A+ DT++ EL R+
Sbjct: 218 QRDLPAVP-GTSRLSPYLRFGMIAVRQCLAVAQAHPG---PGADTWIAEL-AWRDFYIQV 272
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
F+ P+ L+GA+ + D A + ++ + T P+ +A+ ++ G
Sbjct: 273 LFHHPHV--LRGAF---KPQYDDLAWENDPDLFAA--WCAGHTGYPMVDAAMRQLQQEGW 325
Query: 379 MHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
MH RM A +++W G + + +DG G W+
Sbjct: 326 MHNRARMIVASFLTKDLLIDWRWGERYFMQML--------LDGDPAANNGGWQWAAS--- 374
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDG-YI-AYVKRIVG-GTKKRRADSLVSGKEKEL 490
G +P F R N + +KFD G YI Y+ + G K L+S E+
Sbjct: 375 -TGTDAQPYF---RIFNPTCQGQKFDPHGDYIRRYLPELAGVPNHKIHTPHLLSASEQMR 430
Query: 491 CG 492
G
Sbjct: 431 AG 432
>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
Length = 479
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 23/162 (14%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++GE AA+ L + F RL Y DR+ P +P SGLSP LHFG++S ++ +
Sbjct: 204 QAGESAALARL----EAFAADRLARYAQDRDRPAEP-GTSGLSPALHFGELSPRQVWWQV 258
Query: 291 RKARKL-CPE-AIDTFLEELIVRRELADNFCFYQPNY-----DSLKGAWEWARKSLKDHA 343
AR+ PE A +TFL EL RE A + + P+ D GA+ W +
Sbjct: 259 MAAREAGVPEDACETFLSELGW-REFAHHLLWSHPDLGDAPVDDRFGAFPW-----RPDP 312
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D H + + +T PL +A E+ G MH +RM
Sbjct: 313 GDGWLHAW-----QAGRTGIPLVDAGMHELWQTGWMHNRVRM 349
>gi|159044861|ref|YP_001533655.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
gi|157912621|gb|ABV94054.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
Length = 476
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 151/371 (40%), Gaps = 33/371 (8%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM 82
S R PV++W+ RD R+ DN AL+ AV + +PV + + D LGA A + F
Sbjct: 2 SSQTDRAPVIWWVRRDLRLSDNRALVAAV-ETGAPVIPVFLCDPILDS-LGA-APKWRFG 58
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDK 140
L L + ++++ +G+A + + V E GA + + P ++ R K
Sbjct: 59 LGAAALDAALRDRGSRLIY--RKGDALETLRALVSETGAETVYWSRAYDP-DQVARDKAV 115
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLE--YSAKTLRGKI--NKLLPEYLIDYPMLEQ 196
D V H ++ W Y T K ++ +PE +
Sbjct: 116 KSGLQDDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRDRAMPEPQPAPDRIPA 175
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEV--PEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
P + W + + W + A + +GA + P + GEDAA +G F+ R+
Sbjct: 176 P-DNWPESDRLDYW--ALGAAMNRGAAIVAPHLA---IGEDAA----RGRLGAFIAHRVG 225
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
+Y R+ P S LS L +G+I C ++A +TFL+EL V RE
Sbjct: 226 DYDRARDIP-GIEGTSRLSENLTYGEIGPATCWQAGQRALAEGKAGAETFLKEL-VWREF 283
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
A + ++ P+ EW +D +D E + + +T +A+ EM
Sbjct: 284 AYHLVWHTPHLIEKNWRAEWDHFPWRDDNAD-------AETWRRGRTGIRFVDAAMREMY 336
Query: 375 YNGKMHGFMRM 385
G MH RM
Sbjct: 337 VTGTMHNRGRM 347
>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
Length = 490
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 153/386 (39%), Gaps = 58/386 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGL 86
PV+ W RD R+ DN A+++A+ PV V + D+ A A L ++ + L
Sbjct: 11 PVILWFRRDLRLADN----PALNKAHATGRPV-VPVYIHDEGTAVRPAGAASLWWLDKSL 65
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
R L ++ E L L +G++E + + + GA + + F P R D
Sbjct: 66 RALAGSLAERGATLI-LRRGDSETELRRLIDQTGADTVFLNRLFEP-EAWTRDADIAHGL 123
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+D V + + L S G K+ ++ +P TG
Sbjct: 124 KTDGVECRGSNGSLLA--------LPGSLLNGSGGPYKVFTPFMKALRAQAEPPAHTTGP 175
Query: 205 RQ-----SIDWDSIIAAVLRKGAEVPEIGW-CESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
RQ ++ D + A L G+ GED A L F++ L +Y
Sbjct: 176 RQLGAAPGLESDDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHR----FVSGGLADYSN 231
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR---KLCPEAIDTFLEELIVR---R 312
R+ P +P A S LSP+LHFG+IS R + AR A K+ D F+ ELI R
Sbjct: 232 GRDRPAEP-ATSRLSPHLHFGEISPWRAWIAARDAADGGKVTSGEADKFIAELIWRDFSA 290
Query: 313 ELADNFCF-----YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
L +F ++P YD++ W R+ + + T P+ +
Sbjct: 291 HLLHHFPTLPDKAFRPEYDAMP--W--------------RDDEPGFLAWTRGMTGYPIVD 334
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILE 393
A E+ G MH +RM A +++
Sbjct: 335 AGMRELWATGVMHNRVRMIVASFLIK 360
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 181/466 (38%), Gaps = 83/466 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++ W RD R+ DN + A A + VPV + + A ++ F+L LR L
Sbjct: 5 ILCWFRRDLRLDDN-TALLAAYAAAEEVVPVFIFDDAILSRPDTGAVRVAFLLESLRNLD 63
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRRCKDKICNRVSDS 148
N+ L L +G E + V E AS + D P R + + +
Sbjct: 64 ENLRARGSRLL-LRRGRPEHVLAQLVTETAASAVYFNRDVEPFALARDAR--VRAHLEGR 120
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP----MLEQPIEKWTGT 204
+ D + A E + A T Y + P +L QPI +
Sbjct: 121 CAVEGFDDGGLT----APEAVRTKAGT----------PYTVFTPYRQAVLAQPIPR---- 162
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCE--------------SGEDAAMEVLKGSKDGFLT 250
+ A+LR A+VP W GE +A L+G F+
Sbjct: 163 ------PRLAPAMLRTPADVPSDPWPSLKDLGFATSVSPPPGGETSAQARLQG----FIQ 212
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
L Y T+R+ L S LSPYL FG +S +R AR+A +++++ ELI
Sbjct: 213 NGLARYATERDV-LSADGTSRLSPYLRFGCLSPRRAYWAAREAVPEGSPGMESWIAELIW 271
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
R+ F+ P ++ GA+ R++ D A + + + + + +T P+ +A+
Sbjct: 272 -RDFYRQILFHFPYVET--GAF---RRAYDDLAWENNASWF--DLWCQGKTGFPIVDAAM 323
Query: 371 MEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH RM A +++W G + K+ +DG G
Sbjct: 324 RQLLTTGWMHNRARMIVASFLTKDLLIDWRWGERHFM--------KHLVDGDLAANNGGW 375
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W+ G +P F R N + +KFD G AYV++ V
Sbjct: 376 QWAAS----TGTDAQPYF---RIFNPTAQGKKFDPTG--AYVRQYV 412
>gi|389878514|ref|YP_006372079.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
gi|388529298|gb|AFK54495.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
Length = 489
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/473 (24%), Positives = 177/473 (37%), Gaps = 76/473 (16%)
Query: 30 PVVYWMFRDQRVRDNWAL--------------IHAVDQANKNNVPVAVAFNLFDQFLGAK 75
P++ W +D R+ DN AL +H D ++VP + LG
Sbjct: 5 PLIVWFRQDLRIADNPALHRASRSGSRLVCVYVHEDDDPAHDDVPAP-------RPLGGA 57
Query: 76 ARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLRE 133
AR ++ R L L ++ L L +G A IP R GA ++ + + P
Sbjct: 58 ARW--WLHRSLLALDADLRAIGGRLLLL-KGPAAREIPALARRIGAGAVLINRVYDPEGA 114
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R D+ + IH + HN + + E KT G P +
Sbjct: 115 AR---DRAIGERLKADGIH-MAGHNAL---LLHEPWTIETKT-GGPYQVFTPFWRAARDK 166
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD---GFLT 250
E P R + D+ L +P I W + G++D GFL
Sbjct: 167 GEIPPPLAAPDRLDLVEDAPEGVPLAALDLLPRIDWAGGIAASWTPGSAGARDRLAGFLN 226
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS------AQRCALEARKARKLCPEAIDTF 304
+ L Y DR+ P S LSP+L FG+I A A+EA+ + DTF
Sbjct: 227 RALTGYKPDRDRPAG-ETTSRLSPHLRFGEIGPRTVWHAVHHAIEAQGLTGPARASADTF 285
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD--KREHIYTKEQFEKAQTA 362
L EL R E + + + P+ + + LK+ + RE + +++ +T
Sbjct: 286 LTELGWR-EFSYHLLHHFPHLPA---------RDLKETLTGFPWREDAAALDAWQRGRTG 335
Query: 363 DPLWNASQMEMVYNGKMHGFMRM----YWAKKILEWTTGPEEALAIAIYLNDKYEIDGRD 418
P+ +A ++ + G MH +RM + K ++ W P EA + D +D
Sbjct: 336 YPIVDAGMRQLWHTGWMHNRVRMVVASFLVKHLMIWWK-PGEA-----WFWDTL-VDADP 388
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ WS D P F R N +FD DG AYV+R V
Sbjct: 389 ASNTASWQWSAGTGADAA----PYF---RIFNPVLQGERFDGDG--AYVRRWV 432
>gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
Length = 471
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 117/483 (24%), Positives = 183/483 (37%), Gaps = 84/483 (17%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFML--- 83
P++ W+ RD R+ D+ AL A + PV + DQ GA+ +L L
Sbjct: 5 PIIVWVRRDLRLADHPALTAACESGQ----PVIAVYIHDDQVASLGGAQKLRLDLALAQF 60
Query: 84 ------RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIR 135
RG RL+ R +G A + + +RE GA + + R
Sbjct: 61 GKTLADRGSRLILR-------------KGPALGVLRDLIRETGAGAVYWSRLYHATANDR 107
Query: 136 RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKL----LPEYLIDY 191
K + +D + H + W + K K N + + E L
Sbjct: 108 DAAVKSALK-ADGIVARSFTGHLLFEPWTVATKTGGFYKVYTPMWNAVRGNEVAEPLPCP 166
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+ P W + DW + +++G ++ C GEDAA + L F+
Sbjct: 167 AKITAP-AVWPASDALADWQ--LRRAMQRGGDILARH-CTVGEDAARDRLGA----FIAD 218
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
R+ NY R+ P + S LS L FG+IS + C ++A + + FL+EL V
Sbjct: 219 RVANYVKGRDLPAI-KGTSNLSENLTFGEISPRMCWHAGQRALRDGKADAEVFLKEL-VW 276
Query: 312 RELADNFCFYQPNY--DSLKGAWE---WARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
RE A + + P D+ K W+ W + + A+ +++ +T P
Sbjct: 277 REFAYHLAHHTPRILTDNWKEDWDAFPWNTQITPEVAA-----------WQQGRTGIPFV 325
Query: 367 NASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A+ EM G MH RM Y K +L W G + + D + ID +
Sbjct: 326 DAAMREMYVTGTMHNRGRMIVASYLTKHLLTHWKVGLD-------WFAD-HLIDWDPASN 377
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADS 481
+G WS D P F R N KFD D AYVKR + + DS
Sbjct: 378 AMGWQWSAGSGPD----ATPYF---RVFNPVTQLDKFDKDR--AYVKRWIAERYRSPQDS 428
Query: 482 LVS 484
++
Sbjct: 429 ALT 431
>gi|393215739|gb|EJD01230.1| hypothetical protein FOMMEDRAFT_169392 [Fomitiporia mediterranea
MF3/22]
Length = 1055
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 132/310 (42%), Gaps = 61/310 (19%)
Query: 26 KKRGPVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGF 81
KK VVYW+ D RV DN AL A +QA +N+P+ V F + Q A R++ F
Sbjct: 116 KKGESVVYWLRMEDLRVVDNRALSLASEQAQSHNIPLLVLFVISPQDYEAHDRGPRRIDF 175
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIRR 136
MLR ++++Q ++++ I ++ E +IP + + + GA+ L + S + E+RR
Sbjct: 176 MLRNVKVIQDDLDK-LHIPLYIVTVEPRHSIPSRVISLLEDWGATQLFANISYEVDELRR 234
Query: 137 --------CKDKI-CNRVSDSVTIH-------EVDAHNVVPVW------VASEKLEY--- 171
K I C+ + D + ++ A+ V W +E LE+
Sbjct: 235 DIKIHAAGKKANIKCDFIQDKLVVNPGILKTKNGRAYTVYSPWQRNWVTTLNESLEWIEE 294
Query: 172 ------------SAKTLRGKINKLLPEYLIDYPMLEQP--IEKWT-GTRQSIDWDSIIAA 216
S+ G +PE++ + ++ E W GT+ ++ ++
Sbjct: 295 APMPKANDKAIRSSGRFSGLFESKVPEFVDRFECADKDKMAEYWPGGTKVAL---QMLDR 351
Query: 217 VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
L A +IG D A E K S R++ Y T R N S LSPYL
Sbjct: 352 FLHTKARSSQIGETSPLSDGAEESNKSS-------RIQEYSTGR-NLTDMDTTSRLSPYL 403
Query: 277 HFGQISAQRC 286
G ISA+ C
Sbjct: 404 ASGVISARAC 413
>gi|407800097|ref|ZP_11146965.1| deoxyribodipyrimidine photolyase, putative [Oceaniovalibus
guishaninsula JLT2003]
gi|407058089|gb|EKE44057.1| deoxyribodipyrimidine photolyase, putative [Oceaniovalibus
guishaninsula JLT2003]
Length = 474
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 120/304 (39%), Gaps = 46/304 (15%)
Query: 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV--PEIGWCESGEDA 236
K+ P + P Q + W T W + + +GA + P C GE A
Sbjct: 155 KVKDRDPGPALTAPTALQAPDGWPETDDPAIWG--LGTAMNRGAAIVAPH---CHVGEAA 209
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
A L FL R++ Y T R+ P SGLS L +G+IS + C A++A
Sbjct: 210 AQTRLAV----FLRDRVEGYATARDIPAM-HGTSGLSENLTYGEISIRSCWHSAQRAIAE 264
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW--EW-ARKSLKDHASDKREHIYTK 353
TFL+EL V RE A + ++ P + G W EW A +D A D
Sbjct: 265 GKRGAPTFLKEL-VWREFAYHLLYHTPRL--ITGNWRPEWDAFPWNEDAAGDD------A 315
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYL 408
+++ +T P +A+ EM G MH RM Y K ++ W G ++
Sbjct: 316 TAWKRGRTGMPFVDAAMREMFVTGTMHNRARMIVASYLTKHLMCHWKIG--------MHW 367
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
++ ID N +G WS D P F R N +FD D Y++
Sbjct: 368 FEECLIDWDPANNAMGWQWSAGSGPDA----TPFF---RVFNPETQLDRFDAD--RTYIR 418
Query: 469 RIVG 472
R +
Sbjct: 419 RWIA 422
>gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
Ellin185]
gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
Ellin185]
Length = 463
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GEDAA E+L FL + +Y T R+ P KP A S LSP+L FG+IS Q AR+
Sbjct: 227 GEDAAHELLAD----FLDDAVVHYATQRDEPSKP-ATSRLSPHLRFGEISPQTIWHAARR 281
Query: 293 ARKLCPEAIDTFLEELIVR----RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
+ K ++TFL E+ R L DN ++ N + A+ W L + A
Sbjct: 282 SGK----DVETFLSEVGWREFAWHTLYDNPDLHEVNLNRKFDAFPW--PPLDEDA----- 330
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPE 399
+EK +T PL +A E+ G MH +RM A +++W G E
Sbjct: 331 ----LLAWEKGETGVPLVDAGMRELWETGTMHNRVRMVVASFLTKNLLIDWRIGEE 382
>gi|417860350|ref|ZP_12505406.1| DNA photolyase [Agrobacterium tumefaciens F2]
gi|338823414|gb|EGP57382.1| DNA photolyase [Agrobacterium tumefaciens F2]
Length = 479
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 178/470 (37%), Gaps = 83/470 (17%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W +D R+ DN AL+ AV+ +P+ + GA Q ++ L L
Sbjct: 7 PIIVWFRKDLRLSDNLALLAAVEHGGPV-IPLYIQEKSSGPLGGA---QEWWLHHSLASL 62
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV----TDFSPLREIRRCKDKICNRV 145
+EET L L G+AE+ + + + E GA + D + + + K + +
Sbjct: 63 TVALEETGSRLL-LRSGDAEETLRHVISETGADTIFWNRRYDPAGMATDKALKQALSD-- 119
Query: 146 SDSVTIHEVDAHNV-----------------VPVWVASEKLEYSAKTLRGKINKLLPEYL 188
D +T+ H + P W A E E P
Sbjct: 120 -DGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPFWRALEGGEE-------------PHAP 165
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
D P + E W +++ DW ++ + EI W GE+AA E L D F
Sbjct: 166 ADAPKSLKSPETWPKSQKLDDW-KLLPVKPDWARDFSEI-WT-PGENAAREKL----DDF 218
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLE 306
+ LK Y R+ P K A S L+P+L G+IS A K +R + I F +
Sbjct: 219 IDGALKGYEEGRDFPAK-DATSMLAPHLALGEISPA-AVWHATKGLSRHIASNDISRFRK 276
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
EL V RE + F+ P D + W + + +K +T+ T P+
Sbjct: 277 EL-VWREFCYHLLFHFPKLD--EKNWNESFDAFGWRQDEKSFKAWTR-----GMTGYPIV 328
Query: 367 NASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A ++ +G MH +RM A +++W G + + D +D +
Sbjct: 329 DAGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEK-------WFRDTL-VDADPASN 380
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W V G P F R N KFD DG YV+R V
Sbjct: 381 AANWQW----VAGSGADASPFF---RIFNPILQGEKFDGDG--DYVRRFV 421
>gi|424881257|ref|ZP_18304889.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517620|gb|EIW42352.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 483
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 116/480 (24%), Positives = 174/480 (36%), Gaps = 100/480 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGL 86
PV+ W +D R+ DN A+D A+++ P+ + + G A Q ++ L
Sbjct: 8 PVILWFRKDLRLDDN----RALDAAHRSGRPIIPLYISEPEASGTGPLGAAQAWWLHHSL 63
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP-------------- 130
L R++ E Q L GEA + + F+RE GA + + + P
Sbjct: 64 EALDRSLRER-QARLVLASGEALEVLCTFIRESGAEAVFWNRRYDPSGISIDAHIKHELE 122
Query: 131 --LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASE-------KLEYSAKTLRGKIN 181
E R ++ + S +T + P W A E LE AK +I
Sbjct: 123 KQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEQPLEAPAKL---RIA 179
Query: 182 KLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
LP+ + +E W DW AV P GED A E L
Sbjct: 180 SQLPK--------SEALESWKLLPTKPDW-----AVHFTDLWTP-------GEDGAHEKL 219
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
+ F+ L Y +R+ P +P A S LSP+L FG+IS R R K A
Sbjct: 220 RA----FIEDALDGYKENRDYPARP-ATSLLSPHLAFGEISPARIWDATRGLSKRVAAAD 274
Query: 302 DTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
+ I RE + + F+ P N++ +EW R D + +
Sbjct: 275 VVHFRKEIAWREFSYHLLFHFPRLASNNWNDRFDGFEW-RNDDDDF-----------KVW 322
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDK 411
+ T P+ +A ++ +G MH +RM A +++W G + D
Sbjct: 323 CRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRRG-------EAWFRDT 375
Query: 412 YEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+D N W V G P F R N KFD DG YV+ V
Sbjct: 376 L-VDADTANNAASWQW----VAGSGADASPFF---RIFNPVLQGEKFDPDG--DYVRTYV 425
>gi|402548804|ref|ZP_10845657.1| deoxyribodipyrimidine photolyase [SAR86 cluster bacterium SAR86C]
Length = 471
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 107/255 (41%), Gaps = 50/255 (19%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE AA++ LK FL + NY DRN+P+ S +SPYL G IS++RC LE
Sbjct: 205 TGEQAALDRLKN----FLENKASNYSKDRNDPIID-GTSRMSPYLALGIISSKRCILEGL 259
Query: 292 KARKL----CPEAIDTFLEELIVRRELADNFCFYQPN------YDSLKGAWEWARKSLKD 341
K I +++E IV RE N F P + + +W + +
Sbjct: 260 KLNNFEFNSGNNGIIKWIDE-IVWREFYRNIMFSFPKVGRNQPFQDFSKSIQWRFEETEL 318
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-EWTT 396
HA ++ T P+ +A+ ++++ G MH +R M++ K +L +W
Sbjct: 319 HA------------WKTGMTGFPIIDAAMRQLLHEGWMHNRLRMVVAMFFTKNMLHDWRL 366
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKR 456
G A ++ + + D NG G WS D P F R N
Sbjct: 367 GE------AYFMQNLIDGDFSSNNG--GWQWSSSTGTDAA----PYF---RIFNPITQST 411
Query: 457 KFDVDGYIAYVKRIV 471
FD +G ++K+ V
Sbjct: 412 NFDKEGL--FIKKYV 424
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 109/471 (23%), Positives = 179/471 (38%), Gaps = 82/471 (17%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W +D R+ DN AL A D+ + +PV + A Q ++ L L
Sbjct: 6 PLILWFRKDLRLDDNAALATAADE-GRRVIPVYIREPAEAGTGPLGAAQAWWLHHSLAAL 64
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP-------LREIRRCKDK 140
R++EE L L G A + + E GA+ + + + P + R +D
Sbjct: 65 ARSLEEIGSRLT-LRSGPAGQVLDQLIDETGAASVYWNRRYDPPGIAIDKAIKARLTEDG 123
Query: 141 ICNRVSDSVTIHE---------VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
+ R +HE + P W A E + + P D
Sbjct: 124 LVIRTFAGQILHEPTRLTTGSGTNFRVYTPFWKALESSGEPREPAPAPASLNAPPSWPD- 182
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+P++ W +W AE EI + GE A+E L D F+
Sbjct: 183 ---SEPLDSWALLPTKPNW----------AAEFSEI--WQPGEAGALERL----DTFIEN 223
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-ARKLCPEAIDTFLEELIV 310
L Y + R+ P +P S LSP+L G+IS R R A + E I F +E +V
Sbjct: 224 GLAGYRSLRDFPARPNT-SMLSPHLAMGEISPARIWHATRGLAGRFASEDIIHFRKE-VV 281
Query: 311 RRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
R+ + + F+ P N++S A+ W +S D +++++ +T P+
Sbjct: 282 WRDFSYHLLFHFPDLKSKNWNSKFDAFPW--RSAPD----------LLKKWQRGETGYPI 329
Query: 366 WNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
+A ++ +G MH +RM A +++W G + D +D +
Sbjct: 330 VDAGMRQLWRHGYMHNRVRMIAASFLIKDLMIDWREGER-------WFRDTL-VDADPAS 381
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W V G P F R N KFDV+G+ Y++ V
Sbjct: 382 NAASWQW----VAGSGADASPFF---RIFNPITQGEKFDVEGH--YIRTFV 423
>gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 597
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 123/470 (26%), Positives = 189/470 (40%), Gaps = 76/470 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLRGLR 87
VV+W D R+ DN AL A D+A + VP+ F + Q A R ++ FMLR L
Sbjct: 104 VVHWFKMDLRISDNKALALASDKAKQAGVPLIAMFIVSPQDYEAHLRAPVRVDFMLRTLA 163
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPN----FVRECGASLLVTDFS-PLREIRRCKDKIC 142
+L+ ++ + I ++ E NIP+ + E GAS + + + E+RR I
Sbjct: 164 VLKEDLAK-LDIPLYVETVEKRRNIPDRILELMDEWGASHMYANMEYEVDELRREAAMIR 222
Query: 143 NRVSDSVTIHEVDAHNVVP---VWVASEKLEYSAKT--LRGKINKLL--PEYLIDY-PML 194
+ + V VVP + + K +Y+ T R + + P+ L Y P
Sbjct: 223 DFAENGKAFEAVHDTCVVPPGKLQTGAGK-QYAVYTPWYRAWVAHIHENPDLLELYDPPE 281
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
+ P ++ D D I A K + E S K D F + +
Sbjct: 282 KNPASARKTFKKLFDID-IPDAPKNKQLDTEEKKRLRSLWPCGEHEAKKRLDKFCEEMIG 340
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKL--CPEAIDTFLEELI 309
NY RN P S LS +L G ISA+ C AR K +KL E I T++ E+
Sbjct: 341 NYHKKRNIP-SDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQTWISEVA 399
Query: 310 VR---RELADNFCF------YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE--- 357
R + + N+ + ++P Y ++ +W Y +EQF
Sbjct: 400 WRDFYKHVLVNWPYVCMNKPFKPEYSNI--SWS-----------------YDEEQFAAWC 440
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKY 412
+ +T P+ +A+ +M + G MH RM + AK +L +W G ++
Sbjct: 441 EGRTGFPIVDAAMRQMKHLGYMHSRCRMIVACFLAKDLLIDWRKGER------FFMESLI 494
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ D NG G S+ GV Q P F R N KFD DG
Sbjct: 495 DGDFASNNGGWGFSASV-GVDPQ-----PYF---RIFNPLLQSEKFDPDG 535
>gi|406025137|ref|YP_006705438.1| deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432736|emb|CCM10018.1| Deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 476
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 112/471 (23%), Positives = 194/471 (41%), Gaps = 67/471 (14%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ R+ R++DN A+ +K + QF R+L F+ L LL
Sbjct: 6 IVWLRRNLRLQDNKPFAAALRHVDKVLPIFIFDTTILKQFPNPYDRRLSFLAHTLCLLHD 65
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSV 149
++ + F+F G + IP V + + D + P I R + + ++
Sbjct: 66 ALKR-LEGSLFVFHGTPLEIIPKLVNDLKVEAIYADEDYEP-ANIERDR-TLQKALAPHC 122
Query: 150 TIHEVDAHNVVP-------------VWVASEKLEYSAKTLRGKI--NKLLPEYLIDYPML 194
T+H H ++ V+ A K + +G + N+LL EY +Y +
Sbjct: 123 TLHLYCDHLLIKPGTMRTQSNQPYKVYTAYMKAFRAYIAAQGALAQNRLLIEY--NYTLE 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK--DGFLTKR 252
+ +SID + + VL+ ++G+ +D+ + G DGFL +
Sbjct: 181 GRLFIPSALDGRSIDLNVGVEKVLK------QVGYIYK-KDSLWDPKNGVNPLDGFLKNQ 233
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-AIDTFLEELIVR 311
+ +Y +R+ L+ S PYL FG IS + C RKA L + T++ ELI
Sbjct: 234 VDHYKANRDF-LELNGTSRCGPYLRFGLISIRSC---YRKACALASNVGVTTWINELI-W 288
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RE N ++ PN + A++ + S ++ +F QT P+ +A+
Sbjct: 289 REFYANILYHFPNI--IHEAFQEKYRHTIPWNSKPEDY----NRFVHGQTGYPIIDAAVQ 342
Query: 372 EMVYNGKMHGFMRM----YWAKK-ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
++ G MH RM +++K +L+W G E A ++ +D + G
Sbjct: 343 QLWSEGWMHNRARMIVASFFSKNLLLDWRKG-ESFFA-------QHLMDYELASNVGGWQ 394
Query: 427 W-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
W S CGV P F R N +KFD DG+ YVK+ + ++
Sbjct: 395 WSSACGV-----DAPPYF---RVFNPYLQGKKFDPDGH--YVKKYLPSLER 435
>gi|254462705|ref|ZP_05076121.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2083]
gi|206679294|gb|EDZ43781.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium
HTCC2083]
Length = 473
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 151/383 (39%), Gaps = 34/383 (8%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF---NLFDQFLGAKARQLGFML 83
K P++ W RD RV D+ AL A VPV F ++ D A +LG
Sbjct: 3 KEKPIIVWFRRDLRVSDHPAL----SAACSARVPVIAVFIKDDIVDGLGAAPKWRLG--- 55
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKI 141
+ L + + + I L +G A D + + E A + + P R K
Sbjct: 56 KALEVFTQTLAR-LNIPLILREGPAGDVLDALITETDAQGVYWSRLYDPACVTRDTVIK- 113
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-LEQPIEK 200
+ +S + H + W K K + + + +D P+ + ++
Sbjct: 114 ADLLSKGLEARSFGGHLMFEPWTVETKTGGMYKVYT-PFWRSVKDRDVDVPLAVPTSVQP 172
Query: 201 WTGTRQSIDW-DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+ G +S D D + A +R+G + + GE AA L F+ + +Y
Sbjct: 173 YEGHLESADQSDWALGAAMRRGGVIVARH-AQVGEAAAQARLAD----FIENDVSDYVER 227
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
R+ P R SGLS L G+IS +C +A + + FL+EL V RE A +
Sbjct: 228 RDIP-STRGTSGLSENLALGEISPHQCWHAGMRALHEGKDDSEVFLKEL-VWREFAYHLT 285
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ P+ +W + + + A D E I +++ +T +A+ EM GKM
Sbjct: 286 HHTPHILDSNWKSDWDKFAWNEDA-DHPEVI----AWKQGRTGIEFVDAAMREMYVTGKM 340
Query: 380 HGFMRM----YWAKKIL-EWTTG 397
H RM Y K +L W G
Sbjct: 341 HNRGRMIVASYLTKHLLTHWKVG 363
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 116/472 (24%), Positives = 185/472 (39%), Gaps = 89/472 (18%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+++W +D R+ DN +L+ A + + + N D GA R ++ L L
Sbjct: 6 IIHWFRQDLRLADNPSLVAAAQAGDVLPLFILDDDNAGDHKTGAAGRS--WLHHALNALN 63
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
+++ ++ +G+ D IP V + GAS + + + P R I R K N +++
Sbjct: 64 MSLDGKLCVM----RGDPVDIIPKLVAKVGASGVFWNRCYEPWR-IARDKMLKTNLTNNN 118
Query: 149 VTIHEVDAHNVVPVWVA--SEKLEYSAKT---LRGKINKLLPEYLIDYPMLEQPIEKWTG 203
+ + + + W + Y T RG +N P + P Q +
Sbjct: 119 IQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQLVAD-PE 177
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNY 256
+ SID +++ P+ W + GE AAM L F+ L Y
Sbjct: 178 SSMSIDALNLL----------PDHDWGAKMASHWQIGEAAAMTRLH----DFVEGGLNGY 223
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQIS---AQRCALEARKARKLCPEAIDTFLEELIVRRE 313
RN P +P S LS +LH+G+IS A A+E R + ID FL EL RE
Sbjct: 224 KDGRNFPARPHT-SRLSAHLHWGEISPNMAWYAAIEKRDQAGFDND-IDVFLSEL-GWRE 280
Query: 314 LADNFCFY---------QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
+ + ++ QP +DS W+ +L+ +++ +T P
Sbjct: 281 FSHSLLYHFPHLPRQNLQPKFDSFP--WQSDDNALR--------------AWQQGKTGYP 324
Query: 365 LWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
+ +A E+ G MH +RM + K +L W G EA + D +D
Sbjct: 325 IIDAGMRELWETGYMHNRVRMIVGSFLVKNLLLHWHHG--EA-----WFWDCL-VDADLA 376
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
N G W I G G P F R N KFD DG +Y +R V
Sbjct: 377 NNSAGWQW-IAGC---GADAAPYF---RVFNPITQGTKFDADG--SYTRRFV 419
>gi|395328781|gb|EJF61171.1| hypothetical protein DICSQDRAFT_61271 [Dichomitus squalens LYAD-421
SS1]
Length = 588
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 127/315 (40%), Gaps = 66/315 (20%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGL 86
VVYWM D R+RDN A+ A QA K++VP+ V L Q A AR++ F+LR L
Sbjct: 69 VVYWMRMEDLRIRDNRAIAQASAQARKDSVPLIVLHVLSPQDYIAHDRSARKIDFVLRNL 128
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFV----RECGASLLVTDFS-PLREIRR-CKDK 140
++++ + E I + E IP F+ ++ AS L + + E+RR
Sbjct: 129 QIIRSRLSE-LDIPLYTVSHEPRTKIPAFIHGLLQQWKASHLFANMEYEVDELRRDIALS 187
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEK-----LEYSA--KTLRGKINKLLPEYLIDYPM 193
R V+ + +VP + K YS +T + I++ +Y+ + P+
Sbjct: 188 GIARKHGKVSCTFLHDRCIVPPGEVTTKDGRGYTVYSPFLRTWKSTIDQATSDYIGEAPL 247
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE--------------IGWC-ESGEDAAM 238
P+ R + ++ EVP + C +GEDAA
Sbjct: 248 ---PVANDPAVRSHPVYSNLF------DVEVPHEVEGFTLDPKVRERMASCWPAGEDAAH 298
Query: 239 EVL-----------------------KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPY 275
EVL K +K+ RL Y D+ + + S +SPY
Sbjct: 299 EVLRRFLETMSRTSHLGVTDPLSESAKMAKNPSTQSRLGKY-NDQRDRVDADTTSRMSPY 357
Query: 276 LHFGQISAQRCALEA 290
L G ISA+ C EA
Sbjct: 358 LAAGVISARTCVREA 372
>gi|409400169|ref|ZP_11250320.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
gi|409130775|gb|EKN00515.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
Length = 467
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 23/235 (9%)
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
K + FL +++Y T R+ P + S LSP+ HFG+IS + AR A E +
Sbjct: 201 KARLEAFLAGPVQDYATARDIPGR-HGTSKLSPHAHFGEISPRYVWHRARAAG--AGEGV 257
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+TFL+EL+ RE + N + P+ E R+ KD + T ++ +T
Sbjct: 258 ETFLKELLW-REFSINLLWQHPDLRR-----EPIRREFKDFPWETNRDRLT--AWQTGKT 309
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
P+ +A E+ G MH +RM A +++ P +A A + + E D NG
Sbjct: 310 GIPIVDAGMRELWITGWMHNRVRMICASYLVKHLLIPWQA-GEAWFWDTLCEAD-EAANG 367
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
+ CG P F R N +KFD DG AYV+R + K+
Sbjct: 368 ASWQWVAGCGA-----DAAPYF---RVFNPVLQGQKFDGDG--AYVRRFLPALKR 412
>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
Length = 481
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 146/375 (38%), Gaps = 55/375 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YW+ RD R+ D+ L A + + VPV + A A +LG GL
Sbjct: 7 IIYWLRRDLRLADHPGLAAAA-ASGRPVVPVFIHDESVAALGAAPAFRLGL---GLERFG 62
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRVSD- 147
+ + L L +G A + + E GA + +++P R K + +
Sbjct: 63 ATLGDMGSRLI-LRRGSAPAVLQALIAETGAGAVWWTREYTPQAITRDSALKTALQQAGI 121
Query: 148 --------------SVTIHEVDAHNV-VPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+V + V P W A + E SA P
Sbjct: 122 EARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSAPD--------------PAP 167
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+P E W G+ DW + A +R+GA V GE AA+E L D F+
Sbjct: 168 ARVRPPEAWPGSEALSDWG--LGAPMRRGAAVVATH-QAPGEAAALERL----DRFIATG 220
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
+ Y R+ P S LS L G+I + A +A + +TFL++L V R
Sbjct: 221 IGQYDACRDLPAG-DGTSTLSDALSLGEIGPRTLWHRAGEAAHKGAQGAETFLKQL-VWR 278
Query: 313 ELADNFCFYQPNY--DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
+ A + ++ P+ ++ + WE + A+D + + + + +T PL +A+
Sbjct: 279 DFAYHLMYHTPHLLSENWRPGWE-----VFPWATDPADPGFVA--WTRGRTGVPLVDAAM 331
Query: 371 MEMVYNGKMHGFMRM 385
EM G+MH RM
Sbjct: 332 REMYVTGRMHNRARM 346
>gi|389783153|ref|ZP_10194647.1| deoxyribodipyrimidine photo lyase [Rhodanobacter spathiphylli B39]
gi|388435091|gb|EIL92009.1| deoxyribodipyrimidine photo lyase [Rhodanobacter spathiphylli B39]
Length = 469
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 112/460 (24%), Positives = 180/460 (39%), Gaps = 80/460 (17%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
RD R+ DN A A + + + +PV + + D+ A + ++ LR L R++ +
Sbjct: 10 RDLRLADNPAWSAACAE-HAHVLPVFIHAD--DEACPAGSASRWWLHHALRALDRDLRDA 66
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L L +GE D + +R GA + + + P R + K R D + +H
Sbjct: 67 GAALH-LRRGELLDVLRELIRRSGAVAVYWNRLYEPAAISRDTQLKSALR-QDGIAVHSH 124
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW-----------TG 203
+A W + K KL PE P+ + W
Sbjct: 125 NAALWCEPWRIATGQGQPYKVFTPYWRKLRPELQAVAPLPAPRVPGWRELPDGLPLEALE 184
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
IDW + A + G ++G +E+ F + +Y R+ P
Sbjct: 185 LLPRIDWAGGLRAHWQPG---------QAGARELLEI-------FADDAINDYARARDLP 228
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEA-RKARKLCPEAIDT--------FLEELIVRREL 314
+ S LSP+LHFG+IS ++ E R+A AIDT FL EL RE
Sbjct: 229 AR-HGTSRLSPHLHFGEISPRQIHFELDRRA-----GAIDTRRRPDLEPFLRELGW-REF 281
Query: 315 ADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
A + F+ P N++ + WA A D+ E++++ +T PL +A
Sbjct: 282 AHHLLFHFPYTPTENFNPRFNEFAWA-------ADDE----VAIERWQRGRTGIPLVDAG 330
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-S 428
E+ + G MH +RM A + + + L A + +D +D N +G W +
Sbjct: 331 MRELWHTGWMHNRVRMIVASFLTK--NLRQHWLHGARWFHDTL-VDADLANNTLGWQWVA 387
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
CG P F R N +KFD DG AY++
Sbjct: 388 GCGA-----DAAPYF---RVFNPLTQAKKFDPDG--AYLR 417
>gi|433647152|ref|YP_007292154.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
gi|433296929|gb|AGB22749.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
Length = 426
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 117/464 (25%), Positives = 173/464 (37%), Gaps = 90/464 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA--RQLGFMLRGLR 87
P + W RD R+ D L+ A A+ V +A L D L A A R+L ++ LR
Sbjct: 2 PTLLWFRRDLRLHDLPPLLDAA--ASDGEV---LACYLLDPRLTASAGPRRLQYLYDALR 56
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL--LVTDFSPLREIRRCKDKICNRV 145
L +++ + +G E IP +E GAS + D+SP R +D
Sbjct: 57 DLHESLDGRLHVT----RGRPEKVIPKLAKEIGASSVHVSADYSPF---GRRRDVAVRSA 109
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW--TG 203
V + E + P V+ ++ S T Y + + W G
Sbjct: 110 LGDVALEEAGS----PYLVSPGRVAKSDGT--------------PYKVFTPFFDAWRRHG 151
Query: 204 TRQSIDWDS-----IIAAVLRKGAEVPEIGW---CESGEDAAMEVLKGSKDGFLTKRLKN 255
R D D+ I A L G +P+ G +GE AA + DG L++
Sbjct: 152 WRPPADSDANSARWIEPADLPGGVNIPDSGVELELPAGETAARKQWARFVDG----GLED 207
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELA 315
Y DR+ P A S +S +L FG I + A + + FL EL R
Sbjct: 208 YADDRDRP-DLDATSRMSAHLKFGTIHPRTMAADVNSGK-----GAQAFLRELAFRD--- 258
Query: 316 DNFCFYQPNYDSLKGA--WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
FY + W W KS D+ + ++ E ++ +T P+ +A ++
Sbjct: 259 ----FYAAVLHEWPDSAWWNW-NKSFDAIQVDEDQELF--EAWKAGRTGFPIVDAGMRQL 311
Query: 374 VYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
G MH +RM A + L W G L + +DG N G W+
Sbjct: 312 SQTGFMHNRVRMIVASFLVKDLHLPWQWGARWFL--------EQLVDGDIANNQHGWQWA 363
Query: 429 I-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
CG P F R N +KFD DG YV+R V
Sbjct: 364 AGCGT-----DAAPYF---RVFNPVTQGKKFDPDG--TYVRRWV 397
>gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
Length = 533
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 149/365 (40%), Gaps = 34/365 (9%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+YW+ RD R+ DN A + A + +PV + + + A +LG G+R+
Sbjct: 67 PVIYWVRRDFRIGDN-AALSAACATGRPVIPVFICDEVVESHGAAPKFRLG---EGVRVF 122
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
+ L L +G+A + V + GA+ + + + P + R K + +D
Sbjct: 123 GAALAVVGSRL-VLRRGDALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAALK-AD 180
Query: 148 SVTIHEVDAHNVVPVWVASEK-------LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
V + H + W K KT+RG+ + P I P +
Sbjct: 181 GVEVASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGR-DVATP---IPAPASVPAPDV 236
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W + + DW + A + +G +V C GE AA L + F+ R+++Y T+R
Sbjct: 237 WPTSDRLDDW--ALGAAMVRGRDVLAAHIC-VGEAAARTRL----ETFIEGRVQSYQTNR 289
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
+ P S LS L +G+IS C A + F +EL V RE A +
Sbjct: 290 DLP-GVDGTSRLSENLTYGEISPAVCWHAGWAAIHSGKGQAEIFCKEL-VWREFAYHLVH 347
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P+ + W+ S + D E I +++ +T +A+ EM +G MH
Sbjct: 348 HTPHI--VDRNWKEGWDSFPWNTEDTAEVI----AWKQGRTGIAFVDAAMREMYVSGTMH 401
Query: 381 GFMRM 385
RM
Sbjct: 402 NRGRM 406
>gi|349573536|ref|ZP_08885514.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
gi|348014842|gb|EGY53708.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
Length = 504
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 118/467 (25%), Positives = 189/467 (40%), Gaps = 77/467 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W RD R+ D+ AL+ AV +A + V V V L R+L F+ + L L
Sbjct: 31 TLVWFRRDLRLDDHSALMAAV-RAGRPLVGVFVFDRRILDPLPPDDRRLTFICQCLDDLA 89
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRVSDS 148
+ E + G E+ +P CGA+ +V D+ P R NRV
Sbjct: 90 AQLAE-LGMPLHTVHGLPEEVLPELAARCGAAEVVCAEDYEPAAIDRD------NRVGAR 142
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTL--RGKINKLLPEYLIDYPMLEQPI-EKWTGTR 205
+ A N + V + L + + +G+ + Y + L I W
Sbjct: 143 LM-----AQNCRLLSVCDQVLLPKSTVMNKQGRPYTVFTPYKKAWLALYADIYAGW---- 193
Query: 206 QSIDWDSIIAAVLR------KGAEVP----EIGWCES------GEDAAMEVLKGSKDGFL 249
Q +D + +AA+ R + A P ++G+ +S GE AA + + FL
Sbjct: 194 QPVDIHADVAALQRGLPEHLRQAAAPLRPADLGFADSVLIQAGGERAA----QAAWQRFL 249
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
RL +Y R+ P + + SGLSP+L FG +S +R A A E +L ELI
Sbjct: 250 -PRLGDYAVLRDFPAR-KGTSGLSPHLRFGTLSVRRLAAAAYADGS---EGASVWLSELI 304
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
RE F ++ P E+ + ++ A D E ++ QT PL +A+
Sbjct: 305 W-REFFQQFLYHHPEAAEQGFRPEYRALAWENRADD-------IEAWQAGQTGYPLIDAA 356
Query: 370 QMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
+ +G+MH +RM ++ K +L +W G A + + D NG G
Sbjct: 357 MRHLRRSGQMHNRLRMVCASFFCKDLLCDWRIGE------AWFARQLLDFDLAANNG--G 408
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W+ G +P F R+ N +KFD G +++R V
Sbjct: 409 WQWAA----GTGCDAQPYF---RHFNPLTQSQKFDPQG--QFIRRHV 446
>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
Length = 476
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 176/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + + + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFP-NQNAHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + K C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS ++ DK E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|423436667|ref|ZP_17413648.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
gi|401122403|gb|EJQ30190.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
Length = 476
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 183/456 (40%), Gaps = 69/456 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLRHAIMDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLY 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P S KS ++ DK E + + ++K +T P +A E+ G MH
Sbjct: 287 HYPFTVSKP-----LNKSFENFPWDKEEELLS--VWQKGETGYPFIDAGMRELWQTGFMH 339
Query: 381 GFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
RM + K +L W G A + D +D N +G W V
Sbjct: 340 NRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGS 387
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y++R V
Sbjct: 388 GADASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 149/378 (39%), Gaps = 55/378 (14%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P+V W+ D R+ DN AL A D + + VP+ V D ++ L+
Sbjct: 9 PIVVWLRDDLRLDDNPALAEAAD-SGRPVVPLVVLDEESDGVRSLGGTHKWWLHHSLQCF 67
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
+++ + L L +G+A +++ + V GA+ L+ + + R D + + V
Sbjct: 68 GKDLADKGAPLI-LRRGKASEHVVDIVESTGATTLLMNRRYDQASRAVDDAVEAALGSDV 126
Query: 150 TIHEVDA---HNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-----MLEQP---- 197
+ A H+ V + + + P ID P + +QP
Sbjct: 127 EVQRFTANILHDPDKVRTKTGGWYKVYTPFWKNLAEDEPRDPIDPPDKLASLDDQPRSDR 186
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+E+W DW IAA + GE AA E + D +L +YP
Sbjct: 187 LEEWDLLPTRPDWSGGIAAFWK------------VGEAAAHERFEEFSDEWLN----DYP 230
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRC---ALEARKARKLCP-EAIDTFLEELIVRR- 312
R+ P A S +SP+L +G+IS R A RK P +A+ TF +EL+ R
Sbjct: 231 DGRDRP-GDDATSRMSPHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKELVWRDF 289
Query: 313 --ELADNFC-FYQPNYDSLKGAWEW--ARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
L NF NY+ A+ W A+ L+ ++K T P+ +
Sbjct: 290 NYHLLHNFGPLATQNYNDRFDAFPWRSAKSELR--------------AWQKGLTGYPIVD 335
Query: 368 ASQMEMVYNGKMHGFMRM 385
A ++ G MH +RM
Sbjct: 336 AGMRQLWECGWMHNRVRM 353
>gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 492
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 162/384 (42%), Gaps = 53/384 (13%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
V W+ D RV DN AL A N + V +A + + RQ F+L LRL+Q+
Sbjct: 9 VVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAAFLLENLRLVQQ 68
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-EI-RRCKDK-ICNRVSDS 148
+ E L + + ++ V+ C F + EI R +DK + +R++DS
Sbjct: 69 ALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLADS 128
Query: 149 VTIHEVDAHNVVP---VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR 205
V H ++P V + ++ R K L E D + P +
Sbjct: 129 VVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLES--DTTCVPAPDARGEPIN 186
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
++ +A EV + SGE AA++ L+ F +++++Y R+ P
Sbjct: 187 NMVE----LAPFSYPQREVDGDDF-PSGERAALQQLRR----FCREQVQDYDQQRDFPAL 237
Query: 266 PRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR---RELA 315
P S LSPYL G +S ++C + R CPE ++ T+ EL+ R R L
Sbjct: 238 P-GTSKLSPYLALGIVSPRQC---FNRLRAECPEMLERREGGAFTWFNELVWREFYRHLI 293
Query: 316 ---DNFCFYQPNYDSLKGAW-EWA--RKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
C ++P AW +W R+S +D A+ +++ +T P+ +A+
Sbjct: 294 VSWPQLCKHRPF-----TAWTQWVKWRESREDLAA-----------WQQGKTGYPIVDAA 337
Query: 370 QMEMVYNGKMHGFMRMYWAKKILE 393
++ G MH +RM A +++
Sbjct: 338 MRQLNETGWMHNRLRMICASFLVK 361
>gi|116753557|ref|YP_842675.1| deoxyribodipyrimidine photolyase-like [Methanosaeta thermophila PT]
gi|116665008|gb|ABK14035.1| Deoxyribodipyrimidine photolyase-like protein [Methanosaeta
thermophila PT]
Length = 114
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 58 NVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVR 117
N +AV F L QF GA R FML GLR L++ + + I F G+ + IP +
Sbjct: 6 NASLAVVFCLAPQFPGAGDRSYRFMLDGLRELEQRLS-SLGIAFIFTHGDPGNVIPEIID 64
Query: 118 ECGASLLVTDFSPLR 132
+ GA +L+ DFSPLR
Sbjct: 65 DSGAGMLIADFSPLR 79
>gi|424865450|ref|ZP_18289315.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
gi|400758718|gb|EJP72920.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
Length = 388
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 108/253 (42%), Gaps = 44/253 (17%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
E GE+ A ++LK FL ++K Y DRN+P+ S +SPYL G +S++RC LEA
Sbjct: 119 ELGEEGAKKILKN----FLKNKVKRYNEDRNDPI-IEGTSRISPYLALGILSSKRCILEA 173
Query: 291 RKARKL----CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDK 346
K L + I +++E IV RE N P K E+ +D
Sbjct: 174 LKLNDLDIHSGNKGILKWIDE-IVWREFYRNIMHSFPKVSKGKPFQEY---------TDN 223
Query: 347 REHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-EWTTGP 398
Y + +F+ +T P+ +A+ +M G MH +R M++ K +L +W G
Sbjct: 224 INWRYDESEFQAWKNGRTGFPIIDAAMRQMNQEGWMHNRLRMVVAMFFTKNMLHDWRLGE 283
Query: 399 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF 458
+ + IDG + G WS D P F R N + F
Sbjct: 284 KYFMESL--------IDGDFSSNNGGWQWSASTGTDAA----PYF---RIFNPITQSKNF 328
Query: 459 DVDGYIAYVKRIV 471
D +G ++K+ +
Sbjct: 329 DKNG--EFIKKYI 339
>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
Length = 471
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 108/271 (39%), Gaps = 39/271 (14%)
Query: 224 VPEIGWCESGEDAAMEVLKGSK---DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQ 280
+P I W + KG++ D F+ L Y DR+ P K A S LSP+LHFG+
Sbjct: 184 LPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFPAK-NATSRLSPHLHFGE 242
Query: 281 ISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
IS ALE K + C A ++ FL EL RE + ++ P D E R
Sbjct: 243 ISPWVILRALELTKLEQTCDLASVEHFLSEL-GWREFSVYLLYHFPKLDC-----ENFRN 296
Query: 338 SLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KIL 392
E + T+ ++K T PL +A E+ G MH +RM A ++
Sbjct: 297 EFDAFPWQNDEQLLTR--WQKGMTGYPLIDAGMRELWATGYMHNRVRMIVASFLTKDLLI 354
Query: 393 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNY 451
+W G + L +D N W + CG P F R N
Sbjct: 355 DWRLGAQWFLDTL--------VDADLANNSASWQWVAGCGA-----DAAPYF---RIFNP 398
Query: 452 SGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
+KFD DG Y+++ + + + S+
Sbjct: 399 VLQSQKFDPDG--VYIRQWIPELAQLNSQSI 427
>gi|392592765|gb|EIW82091.1| hypothetical protein CONPUDRAFT_53990 [Coniophora puteana
RWD-64-598 SS2]
Length = 562
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 104/444 (23%), Positives = 182/444 (40%), Gaps = 84/444 (18%)
Query: 19 LKQGSLDKKRG-PVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA-- 74
LKQ + K+G VV+WM D R+ DN AL A +A +NN+P+ + F + Q A
Sbjct: 33 LKQPVKNPKKGRSVVHWMRMCDLRLVDNRALSRASIEAKENNIPLVILFVVSPQDYIAHD 92
Query: 75 -KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDF- 128
AR++ F LR L +L+ ++ E I + ++P +FV+ A+ L +
Sbjct: 93 RSARRIDFTLRNLEVLKTSLNE-MNIPLYAITHSPRTSLPERVISFVQSVDATCLFANME 151
Query: 129 ----SPLREIRRCKDKICNRVSDSVTIHEVDAH---------NVVPVWVASEKLEYSAKT 175
R+I+ C+ N + + + A V+ ++L +
Sbjct: 152 YEVDELRRDIKVCQLAKTNNIKTTFFHDKCIAEPGLCMTKDGRAYTVYSPYQRL--WSTI 209
Query: 176 LRGKINKLL----------PEYLID---YPMLEQPIEKWTG------------TR----- 205
+ G ++ + E + D P+ EQPI ++ G TR
Sbjct: 210 VNGNLDTYMREAPPIAANSAEVMKDPTLSPLFEQPIPEFVGGFKLETNNKDVMTRVWPAG 269
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
+ +++ LR A ++G + +L+G+++ RLK Y R+ +
Sbjct: 270 HDAAKEVVLSRFLRTKARASQLGEVDP-------LLEGAEESDRKSRLKEYGNARDR-VD 321
Query: 266 PRALSGLSPYLHFGQISAQRC---ALEARKARKLCPEAIDTFLEELIVR--RELA--DNF 318
S LS YL G IS + C +E +KA K +DT E I R +E+A D +
Sbjct: 322 KDTTSRLSAYLAAGVISPRECVRATMELQKAGK-----VDTSRENGIGRWVQEIAWRDFY 376
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
Y + + K + EH+ + +++ +T P+ +A+ ++ G
Sbjct: 377 VSVLAYYPRVSMGRPFQEKMANVVWENNEEHL---KAWQEGKTGVPIVDAAMRQLNSMGW 433
Query: 379 MHGFMRMYWA-----KKILEWTTG 397
MH MRM A +L+W G
Sbjct: 434 MHNRMRMTVAMFLSKDLMLDWRLG 457
>gi|89069099|ref|ZP_01156472.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
gi|89045272|gb|EAR51338.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
Length = 478
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 106/263 (40%), Gaps = 34/263 (12%)
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
+ A +R+GA+V GE AA L + F+ +RL +YP RN SGLS
Sbjct: 186 LGAEMRRGADVVAEH-VVVGEAAAARRL----ERFVEERLADYPQARNR-FDVEGTSGLS 239
Query: 274 PYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
L G+ISA+ C AR +TFL+E + R+ A + + P + E
Sbjct: 240 ENLAVGEISARSCWQAGLMARDAGNPGAETFLKE-VAWRDFAYHLLHHTPRLATDNWRPE 298
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAK 389
WA D E + +++ +T L +A+ EM G+MH RM Y K
Sbjct: 299 WAAFPWNTD-EDAPEVV----AWQRGRTGVALVDAAMREMYVTGRMHNRGRMIVGSYLTK 353
Query: 390 KIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
+L W G D + D N +G W V G P F R
Sbjct: 354 HLLSHWRIGQR--------WFDAHLTDWDPANNALGWQW----VAGSGPDASPFF---RV 398
Query: 449 MNYSGCKRKFDVDGYIAYVKRIV 471
N G KFD DG AY ++ V
Sbjct: 399 FNPDGQAEKFDPDG--AYRRKWV 419
>gi|76157554|gb|AAX28442.2| SJCHGC08270 protein [Schistosoma japonicum]
Length = 165
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
D K G V+YWM RDQRV+DNWA + A A K VP+ V F ++ R FM+
Sbjct: 79 DIKMG-VLYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAETLRHYTFMIE 137
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPN 114
GL+ +++ E L F + +IP+
Sbjct: 138 GLKEVEKECRE----LCIPFHITSASSIPD 163
>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 485
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 146/384 (38%), Gaps = 67/384 (17%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
P + W D R+ DN AL AV+ P+ + L + GA R++G ++ +
Sbjct: 6 PAILWFREDLRLTDNPALNAAVNSGR----PLICVY-LRETGAGAP-REMGGASRWWLNK 59
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS---PLREIRRCKDKI 141
L L ++E L L G AE IP V E GA+ + + P RE K
Sbjct: 60 SLASLGASLEAIGGKLT-LRTGPAEKIIPALVEETGAAAVFWNRRYGLPERETDAAIKKT 118
Query: 142 -------CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP--EYLIDYP 192
C + + + D W + A + K +P + +
Sbjct: 119 LKDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFWRALQAQYKPPAFIPSPKKIAGAS 178
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ ++ W + DW IAA E GE A + L D FL
Sbjct: 179 AETENLKDWGLHPEKPDWSGGIAAA------------WEPGEVGAQKRL----DAFLDGP 222
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQIS------AQRCALEARKARKLCPEAIDTFLE 306
+ +Y RN P S LSP+L FG+I A R LEA++A + ++ FL
Sbjct: 223 VSDYVGTRNLPGVSTGTSRLSPHLRFGEIGPAQIWRAVRARLEAQQADE---DSARVFLS 279
Query: 307 ELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
E I RE + +Y P NY+S W RK A+ + + QT
Sbjct: 280 E-IAWREFSYTLLYYNPALATENYNSNFNQMAW-RKDDSGFAA-----------WSRGQT 326
Query: 362 ADPLWNASQMEMVYNGKMHGFMRM 385
P+ +A E+ + G MH +RM
Sbjct: 327 GYPIVDAGMRELWHTGWMHNRVRM 350
>gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
Length = 473
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 151/368 (41%), Gaps = 37/368 (10%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
P++ W RD R+ D+ AL A + + +P+ + N D A +LG L
Sbjct: 5 APLIVWFRRDLRLSDHPALAAAC-KTGRPVIPLFIHDNQSDALGAAPKFRLGL---ALAC 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICNR 144
L ++E L L +G+A D + + + + GA + + D + + + KD +
Sbjct: 61 LGDTLKEKGSRLI-LRRGDALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDAL--- 116
Query: 145 VSDSVTIHEVDAHNVVPVWVASEK-------LEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
D V H + W K K++RG+ + E L + P
Sbjct: 117 KEDGVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGRD---VAEPLATPSEIRAP 173
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
E W + DW + A +++G +V + GE AA L GS F+ + Y
Sbjct: 174 -EDWPDSDVLDDWQ--MDAEMQRGRDVVRP-YVRLGEAAAQARL-GS---FIADIVDGYD 225
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
R+ P + SGLS L G+IS C ++A + +TFL+EL RE A +
Sbjct: 226 ESRDMPGED-GTSGLSENLSLGEISPAHCWHAGQRAMQEGKRGAETFLKEL-AWREFAYH 283
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
++ P L W R+ + ++ E +++ +T P +A+ E+ G
Sbjct: 284 LMYHTPRI--LDQNW---REEWQAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTG 338
Query: 378 KMHGFMRM 385
+MH RM
Sbjct: 339 RMHNRGRM 346
>gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
Length = 481
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 182/465 (39%), Gaps = 82/465 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLRGLR 87
++W D R RDN AL A +A + N + F + + + +L FMLR L+
Sbjct: 4 TLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDMADIKLDFMLRNLK 63
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFV------RECGASLLVTDFSPLREIRRCKDKI 141
LQ + + I F+ D P + +C A +F + E RR K
Sbjct: 64 ALQAELAK-LNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEFG-VNERRRDKAVK 121
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID-YPMLEQPIEK 200
++ + + +++P S +T +G + Y + + IE
Sbjct: 122 ETLNAEGLEALKFRDQSILPAG--------SIRTGQGTPYAVFTPYKRAWFSQCPEHIEL 173
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEI--GWCE-------SGEDAAMEVLKGSKDGFLTK 251
W + + + +VPE G+ + +GEDAA++ L D FL
Sbjct: 174 WPEPAKQP------SPMQTPEGDVPESVSGFDKVSSQTYAAGEDAALQKL----DDFLEH 223
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEEL 308
++ Y R+ P +S LSPYL G +S ++C A++ R P E +DT++ EL
Sbjct: 224 KVDRYHEQRDFPAI-DGVSQLSPYLALGVLSGRQCFHAAQRHRHASPNASEGVDTWINEL 282
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHI---YTKEQFE---KAQTA 362
I R FY + +++ R S+ + E++ ++++ F + +T
Sbjct: 283 IWRD-------FY------IHILYDFPRISMTKAFKQETENLQWRHSEKDFLAWCEGKTG 329
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGR 417
P+ +A+ ++ G MH +RM A +L+W G Y K IDG
Sbjct: 330 IPIVDAAMRQLNQTGWMHNRLRMICAMFLSKNLLLDWRLGER-------YFMCKL-IDGH 381
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G WS G P F R N +FD +G
Sbjct: 382 LAANNGGWQWSAS----TGVDAAPYF---RMFNPVAQSERFDPNG 419
>gi|322707580|gb|EFY99158.1| photolyase [Metarhizium anisopliae ARSEF 23]
gi|374257342|gb|AEZ01568.1| CDP photolyase [Metarhizium robertsii]
Length = 587
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 167/408 (40%), Gaps = 67/408 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL----FDQFLGAKARQLGFMLRGL 86
V++W D R DN AL A ++A + VP+ + + F+ L + R + F+LR L
Sbjct: 95 VIHWFKTDLRCNDNRALALASEKAKETAVPLICMYIVSPQDFEAHLTSPVR-VDFILRTL 153
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREIRRCKDKI 141
+L+R++ + I ++ E IP+ V E G+ L + + E+RR + +
Sbjct: 154 EILKRDLAK-LDIPLYIETVERRKQIPDRVLELMEQWGSRHLFANMEYEVDELRREANMV 212
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE--QPIE 199
+ + + V VVP + D +LE P
Sbjct: 213 HDLAENGKSFEVVHDTCVVPPGQLQSGSGNQYAVYSPWYRSWVAHIHADLDLLELFDPPN 272
Query: 200 KWTGTRQSIDWDSIIAAV--------LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
K GT + D AV L K + +GE+AA E L D F +
Sbjct: 273 KNPGTARKRFKDLFDCAVPEAPSNKELTKEEKRRFHSLWPAGENAAKERL----DKFCEE 328
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKL--CPEAIDTFLE 306
R+ Y +RN P + S LS +L G IS++ C AR K +KL E I ++
Sbjct: 329 RIGGYSDNRNIPAE-DGTSSLSVHLASGSISSRTCVRTARDRNKTKKLDGGNEGIRVWIS 387
Query: 307 ELIVR---RELADNFCF------YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
E+ R + + ++ + Y+P Y ++ AW Y +E F+
Sbjct: 388 EVAWRDFYKHVLVHWPYVCMNKPYKPEYSNI--AWS-----------------YNEEHFK 428
Query: 358 ---KAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTG 397
+ +T P+ +A+ ++ +NG MH RM + +K +L +W G
Sbjct: 429 AWCEGRTGFPIVDAAMRQLNHNGYMHNRCRMIVASFLSKDLLIDWRKG 476
>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
Length = 486
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 112/275 (40%), Gaps = 47/275 (17%)
Query: 229 WCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
W E E+ +G+++ FL + L Y RN P P +S LSP+L FG+IS +
Sbjct: 196 WAEGWENVWTPGEQGARERLCVFLDQGLNGYGELRNRPDLPN-VSRLSPHLRFGEISPTQ 254
Query: 286 CALEARKARKLCPEAI---DTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARK 337
+ + PE D FL E IV RE + + F+ P N+ A+ W
Sbjct: 255 IWATTQMHADVHPEHATDADKFLSE-IVWREFSYHLLFHFPDLPEKNWKVGFDAYPW--- 310
Query: 338 SLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----L 392
+++A D R +++ QT P+ +A E+ G MH +RM A + +
Sbjct: 311 --RENAEDLR-------AWQRGQTGYPIVDAGMRELWQTGYMHNRVRMIVASFLVKHLRI 361
Query: 393 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYS 452
W G + D +D N W V G P F R N
Sbjct: 362 SWQHGEN-------WFRDTL-LDADVANNSASWQW----VSGTGADAAPYF---RIFNPY 406
Query: 453 GCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKE 487
+KFD DG AY+++ V K RA L + ++
Sbjct: 407 TQAQKFDPDG--AYIRKWVPELKDLRAPQLFAPQD 439
>gi|365901755|ref|ZP_09439584.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
gi|365417509|emb|CCE12126.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
Length = 480
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 105/255 (41%), Gaps = 40/255 (15%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE AA + L FL + K Y DR+ P A S L+P+L FG+I ++ A
Sbjct: 205 QPGEAAAQQRLAT----FLGQTAKTYAADRDRP-DLDATSHLAPHLRFGEIGPRQVWHAA 259
Query: 291 RKARKLCPE---AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
R A P ID FL EL R E + + +P+ + + S D R
Sbjct: 260 RFAASEHPAQAAGIDKFLSELGWR-EFSRQLLYDRPDLATCN-----LQTSFDDFP--WR 311
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEAL 402
+ +++ +T P+ +A ++ ++G MH +RM A +++W G +
Sbjct: 312 DDAPALASWQRGETGYPIVDAGMRQLWHSGTMHNRVRMVVASFLVKHLLIDWRAGEQ--- 368
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVD 461
+ D +D N G W + CG P F R N KFD D
Sbjct: 369 ----WFWDTL-VDADPANNPAGWQWVAGCGA-----DAAPYF---RVFNPVLQGEKFDPD 415
Query: 462 GYIAYVKRIVGGTKK 476
G AYV+R V G K
Sbjct: 416 G--AYVRRWVPGLAK 428
>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium fabrum str. C58]
gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium fabrum str. C58]
Length = 479
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 114/477 (23%), Positives = 178/477 (37%), Gaps = 91/477 (19%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGL 86
K PV+ W +D R+ DN AL+ AV+ +PV + GA Q ++ L
Sbjct: 4 KTAPVIVWFRKDLRLSDNLALLAAVEHGGPV-IPVYIREKSAGPLGGA---QEWWLHHSL 59
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV-----------TDFSPLREIR 135
L ++E+ L L G+AE + + + E GA +V TD + +++R
Sbjct: 60 AALSSSLEKAGGRLV-LASGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLR 118
Query: 136 RCKDKICNRVSDSVTIHEVDAHNV---------VPVWVASEKLEYSAKTLRGKINKLLPE 186
D + R +HE P W A E + + P+
Sbjct: 119 --DDGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPKSLTAPK 176
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+P E+ + W DW + + W GE A++ L D
Sbjct: 177 V---WPKSEK-LSNWKLLPTKPDWAKDFSDI-----------WT-PGETGALDKL----D 216
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTF 304
F+ LK Y R+ P KP A S LSP+L G+IS A K +R + I F
Sbjct: 217 DFIDGALKGYEEGRDFPAKP-ATSLLSPHLAAGEISPA-AVWHATKGLSRHIASNDISRF 274
Query: 305 LEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+E IV RE + F+ P N++ A+ W R+ + + + +
Sbjct: 275 RKE-IVWREFCYHLLFHFPELGEKNWNDSFDAFSW------------RDDEKSFKAWTRG 321
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEI 414
T P+ +A ++ +G MH +RM A +++W G + + D +
Sbjct: 322 MTGYPIVDAGMRQLWQHGTMHNRVRMIVASFLIKHLLIDWRKGEK-------WFRDTL-V 373
Query: 415 DGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
D + W V G P F R N KFD DG YV+R V
Sbjct: 374 DADPASNAANWQW----VAGSGADASPFF---RIFNPILQGEKFDGDG--DYVRRFV 421
>gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
Length = 465
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 146/359 (40%), Gaps = 29/359 (8%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W RD R+ D+ AL A Q + +PV + + A +LG G+ +
Sbjct: 2 WFRRDLRLTDHPAL-SAAAQTGRPVIPVFIRDDAVAGLGAAPKWRLGL---GIGAFDDAL 57
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTI 151
E L L +G+A + + + ++E GA + + P R K + +D V
Sbjct: 58 REKSSRLI-LRKGDALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGAD-VEA 115
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-----LEQPIEKWTGTRQ 206
H + W K + K N + +D P+ L P + W +
Sbjct: 116 RSFGGHLMFEPWTVETKTGGNYKVYTPFWNAV-KNTGVDAPLSAPKNLTAP-DTWPRSDD 173
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+W + +++GA+V + + GE +A L F+ + +Y +R+ P
Sbjct: 174 LAEW--TMGGAMQRGADVVRP-FVQLGEKSAQSRLGA----FMAHGVADYKANRDLP-GV 225
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
S LS L G+IS +C ++A + +TFL+EL V RE A + + P
Sbjct: 226 DGTSNLSENLALGEISPHQCWHAGQRALHDGKQGAETFLKEL-VWREFAYHLMHHSPRI- 283
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
L W R+ + ++ E + + ++ +T +P +A+ E+ G+MH RM
Sbjct: 284 -LTDNW---REEWQAFPWNEDERLAEVKAWKHGRTGEPFVDAAMRELYVTGRMHNRGRM 338
>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 471
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 109/275 (39%), Gaps = 47/275 (17%)
Query: 224 VPEIGWCE-------SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P I W GE+ A + L D F+ L Y DR+ P K A S LSP+L
Sbjct: 184 LPAINWAARFSEYWIPGEEGAQKKL----DEFIVHHLSGYKRDRDFPAK-NATSRLSPHL 238
Query: 277 HFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
HFG+IS ALE K C A ++ FL EL RE + ++ P D E
Sbjct: 239 HFGEISPWVILRALELAKLEHTCDLASVEHFLSEL-GWREFSVYLLYHFPKLDC-----E 292
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK---- 389
RK E + T ++K T P+ +A E+ G MH +RM A
Sbjct: 293 NFRKEFDAFPWQNDEQLLTC--WQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350
Query: 390 -KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIR 447
+++W +G + L +D N W + CG P F R
Sbjct: 351 DLLIDWRSGAQWFLDTL--------VDADLANNSASWQWVAGCGA-----DAAPYF---R 394
Query: 448 YMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
N +KFD DG Y+++ + + + S+
Sbjct: 395 IFNPILQSQKFDPDG--VYIRQWIPELAQLNSQSI 427
>gi|424870229|ref|ZP_18293891.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393165930|gb|EJC65977.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 483
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 107/477 (22%), Positives = 173/477 (36%), Gaps = 94/477 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W +D R+ DN AL A ++ + +P+ ++ A Q ++ L+ L
Sbjct: 8 PVILWFRKDLRLDDNQALT-AAHRSGRPIIPLYISEPETAGTGPLGAAQAWWLHHSLKAL 66
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP------LR--------- 132
R++ + Q L GEA + + F++E GA + + + P +R
Sbjct: 67 DRSLRKR-QGRLVLASGEALEVLCVFIKESGADAVFWNRRYDPSGTSIDIRIKHQLEKQA 125
Query: 133 -EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASE-------KLEYSAKTLRGKINKLL 184
E+R ++ + S +T + P W A E LE AK ++
Sbjct: 126 IEVRSFGGQLLHEPSRLMTGNGTPYRAYTPFWRALEGGGEPEPPLEAPAKL---RLTSQF 182
Query: 185 PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
P+ + +E W DW A + W GE+ E L+
Sbjct: 183 PK--------SETLESWKLLPAKPDWAGDFADL-----------WT-PGEEGGHEKLRA- 221
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F+ L Y +R+ P +P S LSP+L G+IS R R + P A
Sbjct: 222 ---FVEDALDGYKENRDYPARP-TTSMLSPHLALGEISPARIWDATRGLSQRVPAADIVH 277
Query: 305 LEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+ I RE + + F+ P N++ +EW S A + +
Sbjct: 278 FRKEIAWREFSYHLLFHFPRLASANWNDRFDGFEWRNDSGDFQA------------WRRG 325
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEI 414
T P+ +A ++ +G MH +RM A +++W G + D +
Sbjct: 326 MTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRRG-------EAWFRDTL-V 377
Query: 415 DGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
D N W V G P F R N KFD DG YV+ V
Sbjct: 378 DADPANNAASWQW----VAGSGADASPFF---RIFNPVLQGEKFDPDG--DYVRTYV 425
>gi|451981013|ref|ZP_21929393.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
gi|451761776|emb|CCQ90640.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
Length = 483
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 153/378 (40%), Gaps = 69/378 (18%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ-RN 92
W+ RD R+RD+ AL A QA + V N+ + R++ F+ L+ +Q R
Sbjct: 10 WVRRDLRLRDHTALTAATRQAREVIVVFVFDTNILRKLEDKDDRRVNFIHHSLKEMQARL 69
Query: 93 IEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRVSDSVT 150
+++ +L + G+ +IP +E + T D+ P R +D+I V +
Sbjct: 70 VKKGADLL--VCHGDPVLDIPRLAQELKVDAVFTNRDYDPYA---RKRDRI---VEQKLK 121
Query: 151 IHEVDAHNVVPVWV---------ASEKLEYSAKTLRGKINKLLPEYLID-YPMLEQ--PI 198
I +V H+ + V E + + L PE++ + P L++ P+
Sbjct: 122 IWDVTFHSYMDQVVFEYPDIATRQGEPFKVFTPYKNAWLGALRPEHVAEEKPNLKRLAPV 181
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + + D S+ G + E+ W + GE+ A + K + Y
Sbjct: 182 KVFKEWIEPWDLGSL-------GFKENEL-WVQPGEEGARAAWRK-----FQKYIHRYHK 228
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR---RELA 315
DR+ P SGLS +L FG IS + R A E T+L ELI R + +
Sbjct: 229 DRDFPALKHGTSGLSVHLRFGTISIREL---VRNAMGRKNEGARTWLSELIWRDFYQTIL 285
Query: 316 DNFCF-----YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK---AQTADPLWN 367
D + + ++P YDS++ W K + F+K +T PL +
Sbjct: 286 DRYSYVVRGAFRPEYDSIR----WPGK---------------ESHFKKWCAGETGYPLID 326
Query: 368 ASQMEMVYNGKMHGFMRM 385
A+ G MH +RM
Sbjct: 327 AAMRHFARTGWMHNRLRM 344
>gi|242786746|ref|XP_002480866.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218721013|gb|EED20432.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 593
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 21/285 (7%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFM 82
K R VV+W D R+ DN AL A + A KN +P+ + + Q L A ++ F
Sbjct: 94 KPRNAVVHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFT 153
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREIRRC 137
LR LR+LQR + T I ++ E NIP + E GAS L + + E+RR
Sbjct: 154 LRNLRVLQREL-GTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRR- 211
Query: 138 KDKICNRVSDSVTIHEV--DAHNVVPVWVASEK-LEYSAKT--LRGKINKLLPEYLIDYP 192
+ K+ ++D E D+ V P + S++ +Y+ + R + L +
Sbjct: 212 EAKLVRLLADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLR 271
Query: 193 MLEQPIEKWTGTRQSID--WDSII--AAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
+LE P + R +DS I A+ R+ ++ + + + + E K D F
Sbjct: 272 VLEPPGKNHESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARK-RLDEF 330
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
+T R+K Y R+ + + + LSPYL G +SA+ +A+ A
Sbjct: 331 ITTRVKEYSKKRSM-VDGQYTAILSPYLASGVLSARTAVSKAKDA 374
>gi|378776172|ref|YP_005184602.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364506979|gb|AEW50503.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 472
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 109/275 (39%), Gaps = 47/275 (17%)
Query: 224 VPEIGWCE-------SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P I W GE+ A + L D F+ L Y DR+ P K A S LSP+L
Sbjct: 185 LPAINWAARFSEYWIPGEEGAQKKL----DEFIVHHLSGYKRDRDFPAK-NATSRLSPHL 239
Query: 277 HFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
HFG+IS ALE K C A ++ FL EL RE + ++ P D E
Sbjct: 240 HFGEISPWVILRALELAKLEHTCDLASVEHFLSEL-GWREFSVYLLYHFPKLDC-----E 293
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK---- 389
RK E + T ++K T P+ +A E+ G MH +RM A
Sbjct: 294 NFRKEFDAFPWQNDEQLLTC--WQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 351
Query: 390 -KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIR 447
+++W +G + L +D N W + CG P F R
Sbjct: 352 DLLIDWRSGAQWFLDTL--------VDADLANNSASWQWVAGCGA-----DAAPYF---R 395
Query: 448 YMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
N +KFD DG Y+++ + + + S+
Sbjct: 396 IFNPILQSQKFDPDG--VYIRQWIPELAQLNSQSI 428
>gi|346992466|ref|ZP_08860538.1| deoxyribodipyrimidine photo-lyase [Ruegeria sp. TW15]
Length = 477
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 156/376 (41%), Gaps = 44/376 (11%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF--LGAKAR-QLG 80
+D P++ W RD R+RD AL AV ++ P+ F L DQ LGA + +LG
Sbjct: 1 MDPGHSPIILWFRRDLRLRDYPALTAAV----RSGRPIVPVFILDDQVQALGAAPKWRLG 56
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCK 138
GL + +++ L L +G A + + + E GA + + P + I R K
Sbjct: 57 L---GLEAFAKALDQIGSNL-ILRRGTALRVLKDLIHETGAGAVFWSRAYDP-KAINRDK 111
Query: 139 DKICNRVSDSVTIHEVDAHNVVPVWVASEK-------LEYSAKTLRGKINKLLPEYLIDY 191
+ + + H + W + K +++ G+ + +PE
Sbjct: 112 HIKASLNEQGIEVRSFAGHLLFEPWTIATKAGQPFRVFTPMWRSVSGR-DVAMPE---PT 167
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P + W + + DW+ + +++GA + + GE AA++ L D FL +
Sbjct: 168 PARIAKPDLWPASDRLSDWN--LDRDMQRGATIVR-PFVRPGEAAALDQL----DRFL-E 219
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
+ +Y R+ L S LS YL G+I + + A + + FL +L V
Sbjct: 220 NIDHYQEARDR-LDQVGTSDLSEYLSLGEIGPRTIWHRVQNADRTGSRGGEAFLRQL-VW 277
Query: 312 RELADNFCFYQPNY--DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
RE A + ++ P+ D+ K W+ + + R ++ A+T PL +A
Sbjct: 278 REFAYHLMYHWPHLLTDNWKPEWDAFPWNTDPDTPEVR-------AWKLARTGVPLVDAG 330
Query: 370 QMEMVYNGKMHGFMRM 385
+M G+MH RM
Sbjct: 331 LRQMYVTGRMHNRARM 346
>gi|423384690|ref|ZP_17361946.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
gi|401639360|gb|EJS57099.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
Length = 476
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 181/451 (40%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ ++ +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAVKDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLVNKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPFT 291
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
S KS ++ DK E + + ++K +T P +A E+ G MH RM
Sbjct: 292 VSKP-----LNKSFENFPWDKEEELLS--VWQKGETGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|423528953|ref|ZP_17505398.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
gi|402449821|gb|EJV81656.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
Length = 476
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 103/451 (22%), Positives = 181/451 (40%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ ++ +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAVKDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRVQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPIRK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDGF---LTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E +G+ F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWNPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPFT 291
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
S KS ++ DK E + + ++K +T P +A E+ G MH RM
Sbjct: 292 VSKP-----LNKSFENFPWDKEEELLS--VWQKGETGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|242786742|ref|XP_002480865.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218721012|gb|EED20431.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 771
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 131/286 (45%), Gaps = 23/286 (8%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFM 82
K R VV+W D R+ DN AL A + A KN +P+ + + Q L A ++ F
Sbjct: 272 KPRNAVVHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFT 331
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREIRRC 137
LR LR+LQR + T I ++ E NIP + E GAS L + + E+RR
Sbjct: 332 LRNLRVLQREL-GTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRR- 389
Query: 138 KDKICNRVSDSVTIHEVDAHN---VVPVWVASEK-LEYSAKT--LRGKINKLLPEYLIDY 191
+ K+ ++D E AH+ V P + S++ +Y+ + R + L +
Sbjct: 390 EAKLVRLLADKGIAFET-AHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNL 448
Query: 192 PMLEQPIEKWTGTRQSID--WDSII--AAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
+LE P + R +DS I A+ R+ ++ + + + + E K D
Sbjct: 449 RVLEPPGKNHESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARK-RLDE 507
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
F+T R+K Y R+ + + + LSPYL G +SA+ +A+ A
Sbjct: 508 FITTRVKEYSKKRSM-VDGQYTAILSPYLASGVLSARTAVSKAKDA 552
>gi|157827751|ref|YP_001496815.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
gi|157803055|gb|ABV79778.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
Length = 475
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 195/474 (41%), Gaps = 83/474 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ R+ R+ DN + A+ ++K + ++F R+L F+ L L+
Sbjct: 6 IVWLRRNLRLHDNKSFAAALRNSDKILPIFIFDTTILERFKNPHDRRLSFLANTLCLIND 65
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCK----------- 138
+++ L +F G+ D IP + D + P I R K
Sbjct: 66 ELKKLKGKLL-VFYGKPLDIIPKLAATLKIKNIYADEDYEP-NNIERDKKVQELLGSNCT 123
Query: 139 -DKICNRV---SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ C+ + D V + A+ V ++ + + ++ A NKLL Y +
Sbjct: 124 LNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFR-KFIADNGSISHNKLLTNYSYN---- 178
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA-----AMEVLKGSKDGFL 249
++ T Q I+ +I + K + +IG+ ++ A VL D F+
Sbjct: 179 ---LDGKLYTPQDIELKTIDLNI-GKSEALKQIGYVYKEDELWQPKNAQNVL----DKFI 230
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
T+R+ Y DR+ L S +SPYL FG +S + C +A A P +I T++ ELI
Sbjct: 231 TRRINRYKIDRDF-LYLDGTSTISPYLRFGLVSIRECYRKAFNAAS-NPGSI-TWINELI 287
Query: 310 VRRELADNFCFYQPN------YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RE ++ PN + K W ++K+E+ ++F A+T
Sbjct: 288 -WREFYATILYHFPNTVNEEFLEKYKNKIPW---------NNKKEYF---DKFINAETGY 334
Query: 364 PLWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTGPEEALAIAIYLNDKYEIDGRD 418
P+ +A+ ++V +G MH RM +++K +L+W G EE A +Y +D
Sbjct: 335 PIIDAAVKQLVGDGWMHNRARMIVASFFSKNLLLDWRKG-EEFFA-------QYLMDYEL 386
Query: 419 PNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ G W S CG Q P F R N + FD D Y+K+ +
Sbjct: 387 ASNVGGWQWASSCGTDAQ-----PYF---RIFNPYTQGKNFDPDA--EYIKKYL 430
>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
Length = 471
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 114/286 (39%), Gaps = 47/286 (16%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L D F+ L Y +R+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----DEFIVHHLSGYKRERDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASVEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P D E RK E + T ++K T P+ +A E+ G MH
Sbjct: 287 PKLDC-----ENFRKEFDAFPWQNDEQLLTC--WQKGMTGYPIIDAGMRELWATGYMHNR 339
Query: 383 MRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQG 436
+RM A +++W +G + L +D N W + CG
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTL--------VDADLANNSASWQWVAGCGA---- 387
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
P F R N +KFD DG Y+++ + + + S+
Sbjct: 388 -DAAPYF---RIFNPVLQSQKFDPDG--VYIRQWIPELAQLNSQSI 427
>gi|418296029|ref|ZP_12907873.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539461|gb|EHH08699.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 479
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 173/474 (36%), Gaps = 91/474 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P + W +D R+ DN AL+ AV+ +PV V GA Q ++ L L
Sbjct: 7 PAIVWFRKDLRLSDNLALLAAVEHGGP-VIPVYVREKSCGPLGGA---QEWWLHHSLACL 62
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV----TDFSPLREIRRCKDKICNRV 145
+E+T L L G+A + + + E GA + D + + + K K+ +
Sbjct: 63 SAALEKTGSRL-VLASGDAGETLRQLISETGADAVFWNRRYDPAGMATDKALKQKLRD-- 119
Query: 146 SDSVTIHEVDAHNV-----------------VPVWVASEKLEYSAKTLRGKINKLLPEYL 188
D +T+ H + P W A E E P
Sbjct: 120 -DGLTVRSFSGHLLHEPSRLQTKSGGPYRVYTPFWRALEGGEE-------------PHAP 165
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
D P + + W + + DW ++ +I W GE A E L D F
Sbjct: 166 ADAPKSLKAPKAWLESEKLSDW-KLLPTKPDWAKHFSDI-WA-PGEGGAQEKL----DDF 218
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-ARKLCPEAIDTFLEE 307
+ LK Y R+ P K A S LSP+L G+IS + +R + I F +E
Sbjct: 219 IDGALKGYEEGRDFPAK-DATSMLSPHLALGEISPATVWHATKGLSRHIASNDISRFRKE 277
Query: 308 LIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
IV RE + F+ P N++ A+ W R+ + + + + T
Sbjct: 278 -IVWREFCYHLLFHFPGLDEKNWNESFDAFGW------------RDDETSFKAWTRGMTG 324
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGR 417
P+ +A ++ +G MH +RM A +++W G + + D +D
Sbjct: 325 YPIVDAGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEK-------WFRDTL-VDAD 376
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ W V G P F R N KFD DG YV+R V
Sbjct: 377 PASNAANWQW----VAGSGADASPFF---RIFNPILQGEKFDADG--NYVRRFV 421
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 114/286 (39%), Gaps = 47/286 (16%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L + F+ L Y DR+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----NEFVVHHLSGYKRDRDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASVEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P D E RK E + T ++K T P+ +A E+ G MH
Sbjct: 287 PKLDC-----ENFRKEFDAFPWQNDEQLLTC--WQKGMTGYPIIDAGMRELWATGYMHNR 339
Query: 383 MRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQG 436
+RM A +++W +G + L +D N W + CG
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTL--------VDADLANNSASWQWVAGCGA---- 387
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
P F R N +KFD DG Y+++ + + + S+
Sbjct: 388 -DAAPYF---RIFNPVLQSQKFDPDG--VYIRQWIPELAQLNSQSI 427
>gi|392553658|ref|ZP_10300795.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas spongiae
UST010723-006]
Length = 467
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 115/463 (24%), Positives = 186/463 (40%), Gaps = 88/463 (19%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD--QFLGAKARQLGFMLRGLRL 88
+YW+ RD R+ DN AL +A+ Q N AV ++ Q Q+ F+ R L
Sbjct: 3 TLYWIRRDFRLDDNPALFYALQQ----NCQHAVFITAYETWQAHNHSGIQIDFIERHLNW 58
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPN---FVRECGASLLVTDFSP-LREIRRCKDKICNR 144
+ + + F+ E I F +E + +V + P LRE + +D N+
Sbjct: 59 FSDQLAKLGIKVSFIECDTFEQQIAQLTEFCQENDITSVVANSEPELRE--KIRD---NK 113
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK-WTG 203
+ + + DA ++P Y A + K N++ + P +K W
Sbjct: 114 AAQQLELTLYDADTILP---------YGA--VLNKQNEMFKVF--------TPYKKAWVK 154
Query: 204 TRQSIDWDSIIAAVLRKGAEVPE----IGWCESGEDA-----AMEVLKGSKDGFLTKRLK 254
T Q ++ A +++ E P I + + +D+ A E ++ FL ++
Sbjct: 155 TLQQHGFNQNYLAAIKQSEESPNQASNITFNYAKQDSSKWPLAHEFMQHVLPRFLNDKVI 214
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE----AIDTFLEELIV 310
+Y DR+ P + SG+SPYL G IS +R + E I T+L ELI
Sbjct: 215 DYARDRDFP-AIKGTSGISPYLTIGAISPKRVLYDLLSYYPHILEDVKAPIFTWLNELI- 272
Query: 311 RRELADNFCFYQPNYDSLKG------AWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
RE N PN + L ++W DHA +T + +A+T P
Sbjct: 273 WREFYRNVLLSFPNLNKLHDFQGKFKGFDWP----NDHAK------FTA--WCEAKTGFP 320
Query: 365 LWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDP 419
+ +A+ ++ G MH +RM + K +L +W G EA + ++ IDG
Sbjct: 321 IVDAAMRQLKQTGWMHNRLRMIVASFLTKHLLVDWRLG--EAFFM------QHLIDGDLA 372
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G W+ G G +P F R N KFD DG
Sbjct: 373 ANSGGWQWA-AGT---GCDAQPYF---RIFNPITQSEKFDPDG 408
>gi|377568984|ref|ZP_09798159.1| deoxyribodipyrimidine photo-lyase [Gordonia terrae NBRC 100016]
gi|377533891|dbj|GAB43324.1| deoxyribodipyrimidine photo-lyase [Gordonia terrae NBRC 100016]
Length = 401
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 97/406 (23%), Positives = 152/406 (37%), Gaps = 58/406 (14%)
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSPLREI 134
R+L F+ LR I++ + +G ED IP R A + DF+P
Sbjct: 16 RRLAFLFDSLR----EIDDKLDGKLLVVRGRPEDEIPKLARAVDAERVHVSEDFAPFG-- 69
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY--P 192
RR + + + + D + + V P V + G K+ Y +
Sbjct: 70 RRRDEAVADALGDVELVATGSPYLVSPGRVTKDD---------GSPYKVFTPYSKRWRDH 120
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
P + ++ +D + A + P +GEDAA E DG
Sbjct: 121 GWRAPADSSVPAKKIVDPSDLTKAGRIRVPAAPTTLSIPAGEDAATERWAEFVDG----D 176
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L +Y + RN+P + S +S YL +G I + A + ++ +L EL R
Sbjct: 177 LADYDSGRNDPAG-DSTSRMSAYLKYGNIHPRTLAADLGRS-----GGAQAYLRELAFRD 230
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK-EQFEKAQTADPLWNASQM 371
AD ++ P+ SL W + D E Y + + ++ +T PL +A
Sbjct: 231 FYAD-VLYHWPH--SLWHNWN---RQFDGIDLDTDEKAYERFDAWKAGRTGFPLVDAGMR 284
Query: 372 EMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
++ G MH +RM A + L W G E + D+ IDG + G
Sbjct: 285 QLAETGYMHNRVRMVTASFLVKDLHLPWWWGAE-------WFLDQL-IDGDMASNNHGWQ 336
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
W+ D P F R N +KFD DG YV+R VG
Sbjct: 337 WAAGTGTDAA----PYF---RVFNPEAQAKKFDPDG--EYVRRWVG 373
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 162/394 (41%), Gaps = 60/394 (15%)
Query: 16 IRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK 75
+ L D R P++ W +D R+ DN AL AV+ P+ + L D+ GA
Sbjct: 8 VSALHSMHRDSDR-PLLLWFRQDLRLADNPALRAAVESGQ----PILPVYILDDETPGAW 62
Query: 76 A---RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP 130
A ++ L L +++ L L +G++ + I + VRE GA+ + + + P
Sbjct: 63 AIGGAARWWLHHSLTALSHDLKALGAPLI-LRRGDSREVIDSLVREAGATAVYWNRCYEP 121
Query: 131 LREIRR-------CKDKICNRVSDSVTIHE---VDAHNVVPVWVASEKLEYSAKTLRGKI 180
R +D I R +S +HE V+ + P V S + A +GK
Sbjct: 122 FARKRDEAIKATLKQDGIEARSFNSALLHEPWTVENKSGEPFRVYSAF--WRACLAKGKP 179
Query: 181 NKLLP--EYLI--DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
+K LP E L+ P + I W +W A+ E W GE+
Sbjct: 180 DKPLPAPETLVAASAPASDS-IGDWKLLPTKPNW-----------AKRFESAWT-PGENG 226
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALEARKA 293
A E L G FL + + Y +R+ P A S LSP+LHFG+I ++ A A
Sbjct: 227 AQERLTG----FLDEAVNRYKAERDRP-DIEATSRLSPHLHFGEIGPRQIWHATRAAMAA 281
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
L + + FL E + RE + + ++ D+L L+ +D H K
Sbjct: 282 HDLNEASAEKFLSE-VGWREFSHHLLYHN---DALP------EHPLRPEFADFPWHENDK 331
Query: 354 --EQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+++ T P+ +A E+ G MH +RM
Sbjct: 332 ALTAWQRGLTGYPIVDAGMRELWATGWMHNRVRM 365
>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
Length = 471
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 114/286 (39%), Gaps = 47/286 (16%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L D F+ L Y +R+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----DEFIVHHLSGYKRERDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASVEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P D E RK E + T ++K T P+ +A E+ G MH
Sbjct: 287 PKLDC-----ENFRKEFDAFPWQNDEQLLTC--WQKGMTGYPIIDAGMRELWATGYMHNR 339
Query: 383 MRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQG 436
+RM A +++W +G + L +D N W + CG
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTL--------VDADLANNSASWQWVAGCGA---- 387
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
P F R N +KFD DG Y+++ + + + S+
Sbjct: 388 -DAAPYF---RIFNPVLQSQKFDPDG--IYIRQWIPELAQLNSQSI 427
>gi|334143281|ref|YP_004536437.1| deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium cyclicum
ALM1]
gi|333964192|gb|AEG30958.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium cyclicum
ALM1]
Length = 478
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 108/254 (42%), Gaps = 40/254 (15%)
Query: 225 PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ 284
P I + GE AA+ FLT +++YP R+ P S LS +LHFG+IS+
Sbjct: 195 PLISQWKVGEQAAI----NQATHFLTTHIQHYPERRDFPAI-NGTSQLSIHLHFGEISST 249
Query: 285 RCALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
R R+A+ P EAI +F+ +LI RE + F+ P G A +S K
Sbjct: 250 RLLESCRQAQANQPGHSEAIQSFIRQLI-WREFSRYLLFFNP------GLINQAYQS-KF 301
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY---WAKKIL--EWTT 396
+ D E +++ T P+ +A ++ + G MH +RM W K L W
Sbjct: 302 NQIDWPEPDDQVVAWQRGLTGVPIIDAGMRQLWHTGWMHNRVRMLVGSWLTKNLNQHWLV 361
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCK 455
G A + N +D N +G W + CGV P F R N
Sbjct: 362 GQ------AWFENTL--LDADIANNVMGWQWVAGCGV-----DAAPYF---RLFNPVVQS 405
Query: 456 RKFDVDGYIAYVKR 469
KFD G+ Y+++
Sbjct: 406 EKFDPQGH--YIRQ 417
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 101/275 (36%), Gaps = 54/275 (19%)
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+E W DW S A + C GE+ A E L+ F+ RL Y
Sbjct: 187 LESWKLLSTQPDWASNFADL------------CTPGEEGAQEKLRT----FIEDRLDGYK 230
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+R+ P KP A S LSP+L G+IS R R K P A + I RE + +
Sbjct: 231 ENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSKHVPAADIVHFRKEIAWREFSYH 289
Query: 318 FCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
+ P N+D +EW R++ KD + + + T P+ +A +
Sbjct: 290 LLAHFPRLATANWDDRFDGFEW-RRAEKDF-----------KAWSRGMTGYPIVDAGMRQ 337
Query: 373 MVYNGKMHGFMRMYWAKKIL-----EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
+ G MH +RM A ++ +W G + D +D N W
Sbjct: 338 LWRYGWMHNRVRMIAASFLIKDLMVDWRHG-------EAWFRDTL-VDADPANNAASWQW 389
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
V G P F R N KFD DG
Sbjct: 390 ----VAGSGADASPFF---RIFNPVLQGEKFDPDG 417
>gi|397665892|ref|YP_006507429.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395129303|emb|CCD07533.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 114/286 (39%), Gaps = 47/286 (16%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L D F+ L Y +R+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----DEFIVHNLSGYKRERDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASVEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P D E RK E + T ++K T P+ +A E+ G MH
Sbjct: 287 PKLDC-----ENFRKEFDAFPWQNDEQLLTC--WQKGMTGYPIIDAGMRELWATGYMHNR 339
Query: 383 MRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQG 436
+RM A +++W +G + L +D N W + CG
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTL--------VDADLANNSASWQWVAGCGA---- 387
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
P F R N +KFD DG Y+++ + + + S+
Sbjct: 388 -DAAPYF---RIFNPVLQSQKFDPDG--IYIRQWIPELAQLNSQSI 427
>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
Length = 476
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 103/453 (22%), Positives = 173/453 (38%), Gaps = 63/453 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLK-A 63
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
F + +G+ ++ I + + + + + + + + K+ + D + E +
Sbjct: 64 LGATFIIRKGKTQEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K T QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQAIPKPTSKVQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDGF---LTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E +G+ F + +L Y R+ P S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFP-NQNVHS 232
Query: 271 GLSPYLHFGQISAQ-----RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN- 324
L+PYL FGQIS + + L + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLI-WREFSYYLLYHYPFT 291
Query: 325 -YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
Y L K+ + DK E + ++K +T P +A E+ G MH
Sbjct: 292 VYKPL-------NKNFEHFPWDKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHNRA 342
Query: 384 RM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK 438
RM + K +L W G A + D +D N +G W V G
Sbjct: 343 RMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGAD 390
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD DG Y+++ V
Sbjct: 391 ASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|404444701|ref|ZP_11009854.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vaccae ATCC 25954]
gi|403653381|gb|EJZ08370.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vaccae ATCC 25954]
Length = 447
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 108/463 (23%), Positives = 168/463 (36%), Gaps = 82/463 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA--RQLGFMLRGLRL 88
V W+ RD R+ D AL A D +A + D L A + R+L ++ LR
Sbjct: 3 AVLWLRRDLRLADLPALRAAADTDGTGTE--VLACYVLDPRLRASSGPRRLQYLYDALRD 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRVS 146
+ R+++ + +G+ IP GAS + DF+P RR +++ +
Sbjct: 61 VHRSLDGRLLVT----EGDPRHRIPALAEAVGASSVHVSDDFTPFS--RRRDEQVRAALG 114
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM--LEQPIEKWTGT 204
D + + V P V G K+ + + P E +
Sbjct: 115 DVELVATGSPYLVSPGRVTKSD---------GTPYKVFTPFFDAWRRHGWRGPAESGAAS 165
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGW---CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+ ID + + E+P+ G +GE AA+E + F+ L +Y DRN
Sbjct: 166 ARWIDPADVAG---HRAVEIPDAGVELELPAGETAALEAWRR----FVDDGLDDYAEDRN 218
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR-------REL 314
P A S +S +L FG I + A E + + +L EL R RE
Sbjct: 219 RP-DLAATSRMSAHLKFGTIHPRTMAAELGRG-----QGAHAYLRELAFRDFYASVVREW 272
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
D+ W W R D + E +++ +T P+ +A ++
Sbjct: 273 PDSTW------------WNWNRSFDAIEVDDDADAERAFEAWKRGKTGFPIVDAGMRQLA 320
Query: 375 YNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
G MH +RM A + L W G L + +DG N G W+
Sbjct: 321 EVGFMHNRVRMIAASFLVKDLHLPWQWGARWFL--------EQLVDGDMANNQHGWQWAA 372
Query: 430 -CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
CG P F R N +KFD G YV+R V
Sbjct: 373 GCGT-----DAAPYF---RVFNPGTQGKKFDPSG--DYVRRWV 405
>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
Length = 472
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 108/252 (42%), Gaps = 44/252 (17%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A VLK F+ + LKNYP R+ P + S LSPYLHFG+IS ++
Sbjct: 196 KPGEKNAQIVLKK----FIKENLKNYPAHRDRP-DISSTSHLSPYLHFGEISIRQVWTAI 250
Query: 291 RKAR---KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD-- 345
+A K +A D FL +LI RE A ++ P R + ++ +
Sbjct: 251 TQATIQDKNLQKAADVFLRQLIW-REFAYYLLWHFPQM---------GRSNFRNQFDNFK 300
Query: 346 -KREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPE 399
K+ + + ++K T P+ +A E+ G MH +RM A +++W G E
Sbjct: 301 WKKNKNWLRA-WQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVKDLMIDWREG-E 358
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
+ + +D N +G W I G G P F R N +KFD
Sbjct: 359 KWFWNTL-------LDADLANNALGWQW-IAGC---GPDAAPYF---RIFNPILQSKKFD 404
Query: 460 VDGYIAYVKRIV 471
DG Y+KR +
Sbjct: 405 PDG--TYIKRWI 414
>gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
Length = 474
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/403 (21%), Positives = 159/403 (39%), Gaps = 52/403 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V W D R+ D+ A+ A+ A ++ + F++ D + + + LR
Sbjct: 6 TVVWFRNDLRLNDHPAIDEALTFAEDHDTKILCVFHIHDDLFSHLHTRHDYFFQTLRHFS 65
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+++ + FL+ GE V E ASLL ++S ++ + KD T
Sbjct: 66 DDLKSRNIAIRFLY-GE--------VTEAFASLL-KEYSGVQAVFASKDYTSFATERDRT 115
Query: 151 IHEV-DAHNVVPVWVASEKLEYSAKTLR--GKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
+ + + N+ S L+ + ++ G K+ Y + L++P+ +
Sbjct: 116 VRTLFEERNIRFTLTVSNHLQEPSSIMKDDGTPYKVYTPYSKQW--LKKPVRGLLAGHEK 173
Query: 208 IDWDSIIAAVLRKGA-----EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
+ + +G + W GED A E L + F+T RL +Y R+
Sbjct: 174 KLRERTCEVAMNRGKLDDFLASSDRTWQALGEDHAHERL----EQFVTDRLTHYGESRDF 229
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
P S LSPYL G +S + A + +A TF++EL R D +
Sbjct: 230 PAVA-GTSRLSPYLKTGVLSVAQVYHAAYPLFEKGDDAAVTFIKELAWR----DFYTMIH 284
Query: 323 PNYDSLKGA-WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
++++L+ ++ ++L + D+ E +++ QT PL +A+ ++ G MH
Sbjct: 285 YHFENLRNQEFQEKYRTLSWNEDDE-----LLEYWKQGQTGFPLIDAAMRQLNTTGWMHN 339
Query: 382 FMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
+RM A A +L Y ID R+ Y
Sbjct: 340 RLRM-----------------ATASFLTKDYRIDWREGERYFA 365
>gi|424910085|ref|ZP_18333462.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846116|gb|EJA98638.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 479
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 117/473 (24%), Positives = 178/473 (37%), Gaps = 77/473 (16%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFM 82
+ K PV+ W +D R+ DN AL+ A D +PV + ++ GA R Q ++
Sbjct: 1 MQTKASPVIVWFRKDLRLSDNLALLAAADHKGPV-IPVYIR----EKCCGALGRAQKWWL 55
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD-------FSPLREIR 135
L L +++T L L G+AE+ + + E GA + + S + ++
Sbjct: 56 HHSLTALHAALKKTGSRLV-LASGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTLK 114
Query: 136 RC-KDK-ICNRVSDSVTIHEVDAHNV---------VPVWVASEKLEYSAKTLRGKINKLL 184
R +DK + R +HE P W A E E
Sbjct: 115 RALRDKGLTVRSFSGHLLHEPSKLQTKSGGPYRVYTPFWRALEGGEEPHAPADAPDRLNA 174
Query: 185 PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
P ++P E +++W + DW E +I W GED A E L
Sbjct: 175 PR---NWPRSET-LDEWQLLPKRPDW----------AREFSDI-WT-PGEDGAREKLSDF 218
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-ARKLCPEAIDT 303
DG LK Y R+ P K A S LSP+L G+IS + +R + I
Sbjct: 219 IDG----ALKGYEEGRDLPAK-DATSRLSPHLALGEISPATVWHATKGLSRHIASNDISR 273
Query: 304 FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
F +E IV RE + F+ P D + W + + DK +T+ T
Sbjct: 274 FRKE-IVWREFCYHLLFHFPELD--EKNWNDSFDAFNWRDDDKSFTAWTR-----GMTGY 325
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRD 418
P+ +A ++ +G MH +RM A +++W G + + D +D
Sbjct: 326 PIVDAGMRQLWRHGTMHNRVRMIVASFLIKHLLIDWRKGEK-------WFRDTL-VDADP 377
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ W V G P F R N KFD DG YV+R V
Sbjct: 378 ASNAANWQW----VAGSGADASPFF---RIFNPILQNEKFDGDG--DYVRRFV 421
>gi|392415860|ref|YP_006452465.1| deoxyribodipyrimidine photolyase [Mycobacterium chubuense NBB4]
gi|390615636|gb|AFM16786.1| deoxyribodipyrimidine photolyase [Mycobacterium chubuense NBB4]
Length = 446
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 169/461 (36%), Gaps = 76/461 (16%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA--RQLGFMLRGLR 87
P V W RD R+ D+ AL+ A D +A + D L A A R+L ++ LR
Sbjct: 2 PAVLWFRRDLRLCDHPALLAAADVDGAGTD--VLACYVLDPRLEASAGPRRLQYLYDALR 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRV 145
+++ + +GE + IP + GAS + DF+P RR D++ + +
Sbjct: 60 ----DLDSALGGRLLVTRGEPKRRIPAVAKAVGASSVHVSGDFTPFG--RRRDDQVRDAL 113
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ--------P 197
D V V S L + +G Y + P + P
Sbjct: 114 GD-----------VELVATGSPYLVSPGRVTKGDGTP----YKVFTPFFDAWRRHGWRPP 158
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKG-AEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
+ + + ID A V R G AE+P+ G E A + + + FL L Y
Sbjct: 159 ADSKKSSARWID----PADVGRGGLAEIPDAG-VELDLPAGEQAARHQWEQFLGDGLAGY 213
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
DRN P A S +S +L FG I + A + + + +L EL R A
Sbjct: 214 ADDRNRP-DLAATSRMSAHLKFGAIHPRTMAADLGRGK-----GAQAYLRELAFRDFYAS 267
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
+ + W W + + + E ++ +T P+ +A ++
Sbjct: 268 VLHEWPHSV-----WWNWNKNFDGIEVDEGHDAKKAFEAWKAGKTGFPIVDAGMRQLAAT 322
Query: 377 GKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-C 430
G MH +RM A + L W G L + +DG N G W+ C
Sbjct: 323 GFMHNRVRMIVASFLVKDLHLPWQWGARWFL--------EQLVDGDMANNQHGWQWAAGC 374
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N + KFD G YV+R V
Sbjct: 375 GT-----DAAPYF---RVFNPTTQGAKFDPSG--EYVRRWV 405
>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
Length = 476
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 107/457 (23%), Positives = 180/457 (39%), Gaps = 71/457 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--IGSASK--WWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
P Y L K+ + + E + ++K +T P +A E+ G M
Sbjct: 288 YPFTVYKPL-------NKNFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTGFM 338
Query: 380 HGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
H RM + K +L W G A + D +D N +G W V
Sbjct: 339 HNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAG 386
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD DG Y+++ V
Sbjct: 387 SGADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 457
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 108/455 (23%), Positives = 171/455 (37%), Gaps = 69/455 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ---FLGAKARQLGFMLRGL 86
P++ W+ RD R+ D+ AL HA Q PV +AF DQ LG +R ++ L
Sbjct: 5 PILVWLRRDLRLTDHPALTHAAQQG-----PVVLAFCHDDQDGRALGGASRW--WLHHSL 57
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV- 145
L + L +G E IP CGA + + S + + ++ +
Sbjct: 58 AALGDTVT--------LARGRCEAEIPRLAEACGARAVYWNASADPALSATEARVRQALK 109
Query: 146 --------SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ +I V + P V + + P L+ P P
Sbjct: 110 IPTETFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLVLAPCPGLP 169
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+ +DW +A + + G E+G A + FL ++ Y
Sbjct: 170 LAA-LELMPKLDWWRGMAELWQPG---------EAGAAARLA-------DFLDGPVETYQ 212
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRELAD 316
DR+ P KP S LSP+L FG+IS ++ AR L P + I TFL+EL RE +
Sbjct: 213 RDRDLPAKP-GTSLLSPHLAFGEISPRQI---WHAARALPPGDGIHTFLKEL-GWREFSR 267
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
+ QP+ ++ R + A R+ +++ +T P+ +A ++
Sbjct: 268 HLLARQPDLATIP-----LRPEFR--AFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQT 320
Query: 377 GKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
G MH +RM A +++ P +A + +D N W V G
Sbjct: 321 GWMHNRVRMIVASFLIKDLLIPWQAGEAWFW---DTLVDADSANNAASWQW----VAGSG 373
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD DG YV+ V
Sbjct: 374 ADAAPFF---RIFNPVTQGEKFDPDG--TYVRTWV 403
>gi|389772571|ref|ZP_10192146.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
gi|388429582|gb|EIL86900.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
Length = 471
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 114/265 (43%), Gaps = 57/265 (21%)
Query: 227 IGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFG 279
IGW + GED A E+L + F + +Y R+ P + S LSP+LHFG
Sbjct: 191 IGWDSGLAETWQPGEDGAHELL----EIFADDAIGDYAHARDLPAR-HGTSRLSPHLHFG 245
Query: 280 QISAQRCALEA-RKARKLCPEA---IDTFLEELIVRRELADNFCFYQP-----NYDSLKG 330
+IS ++ E R+AR + + I+ +L EL RE A + ++ P N++
Sbjct: 246 EISPRQIHFELDRRARAIDAKRRPDIEPYLRELGW-REFAHHLLYHFPHTPTDNFNPRFD 304
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390
+ WA A+D+ E+++ +T PL +A E+ + G MH +RM A
Sbjct: 305 GFRWA-------AADQS----LIERWQHGRTGIPLVDAGMRELWHTGWMHNRVRMIVASL 353
Query: 391 ILE-----WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFG 444
+ + W G A + D +D N +G W + CG P F
Sbjct: 354 LTKNLRQHWQHG-------ARWFWDTL-VDADLANNTLGWQWVAGCGA-----DAAPYF- 399
Query: 445 KIRYMNYSGCKRKFDVDGYIAYVKR 469
R N +KFD DG Y++R
Sbjct: 400 --RVFNPVTQAKKFDPDG--TYLRR 420
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 102/247 (41%), Gaps = 38/247 (15%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A VLK F+ + LKNYP R+ P + S LSPYLHFG+IS ++ +
Sbjct: 198 GEKNAQIVLKK----FIKENLKNYPAHRDRP-DISSTSHLSPYLHFGEISIRQVWTAITQ 252
Query: 293 AR---KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A K +A D FL +LI RE A ++ P R + K ++
Sbjct: 253 ATIQDKNLQKAADVFLRQLIW-REFAYYLLWHFPQMGKSN-----FRNQFDNFKWKKNKN 306
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAI 404
++K T P+ +A E+ G MH RM A +++W G E+
Sbjct: 307 WL--RAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLVKDLMIDWREG-EKWFWN 363
Query: 405 AIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+ +D N +G W I G G P F R N +KFD DG
Sbjct: 364 TL-------LDADLANNALGWQW-IAGC---GLDAAPYF---RIFNPILQSKKFDPDG-- 407
Query: 465 AYVKRIV 471
Y+KR +
Sbjct: 408 TYIKRWI 414
>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
Length = 476
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 104/452 (23%), Positives = 181/452 (40%), Gaps = 61/452 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLRHAIMDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D E + F + +L +Y R+ P +
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQ-NVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
S KS ++ DK E + + ++K +T P +A E+ G MH R
Sbjct: 291 TVSKP-----LNKSFENFPWDKEEELLS--VWQKGETGYPFIDAGMRELWQTGFMHNRAR 343
Query: 385 M----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
M + K +L W G A + D +D N +G W V G
Sbjct: 344 MAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADA 391
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 392 SPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 85/379 (22%), Positives = 139/379 (36%), Gaps = 58/379 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W +D R+ DN AL A ++ + +P+ + A Q ++ L L
Sbjct: 8 PVILWFRKDLRLDDNQALT-AAHRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLHHSLEAL 66
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLR--------------- 132
R++++ L L GEA + + F++E GA + + + P
Sbjct: 67 NRSLQKRHGRLV-LASGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDARIKHELEKQA 125
Query: 133 -EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
E R ++ + S +T + P W A E + L L L
Sbjct: 126 IEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGDEPEPPLEAPAELRLTSQL--- 182
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P E +E W DW + W GE+ A + L F+
Sbjct: 183 PTSET-LESWKLLPTKPDWAGDFVDL-----------WT-PGEEGAQQRLHA----FVED 225
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
L+ Y +R+ P +P A S LSP+L G+IS R R + P A + I
Sbjct: 226 ALEGYKENRDYPARP-ATSMLSPHLALGEISPARIWDATRGLSQRVPAADIVHFRKEIAW 284
Query: 312 RELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
RE + + F+ P N++ EW S E + + T P+
Sbjct: 285 REFSYHLLFHFPRLASANWNDRFDGLEWCNDS------------DDFEAWRRGMTGYPIV 332
Query: 367 NASQMEMVYNGKMHGFMRM 385
+A ++ +G MH +RM
Sbjct: 333 DAGMRQLWRHGWMHNRVRM 351
>gi|375135573|ref|YP_004996223.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
protein [Acinetobacter calcoaceticus PHEA-2]
gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
protein [Acinetobacter calcoaceticus PHEA-2]
Length = 480
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 184/472 (38%), Gaps = 92/472 (19%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQA--------------NKNNVPVAVAFNLFD-QFLGAKA 76
+ W +D RVRD+ AL HA Q ++ P+ + F L Q L +
Sbjct: 7 LIWFRQDLRVRDHAALWHASQQGPCIGLIILSPEQWQTHHDAPIKINFYLRQLQQLKKEL 66
Query: 77 RQLGFMLR--------------GLRLLQRNIEETF-QILFFLFQGEAEDNIPNFVRECGA 121
QL L G +Q NIE + I F + + + + + +F+ + G
Sbjct: 67 EQLNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNELKRDKTVQDFLNQQGK 126
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
L + R +C+ + S ++V A +K YS + G
Sbjct: 127 ELFLFH-------DRTIFPLCSIRNQSQQPYQVFG--------AFKKACYSKLDISG--- 168
Query: 182 KLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAME 239
LP+ YP+ E+ + + I+ ++ I A + G +GE+ A+E
Sbjct: 169 --LPQC---YPIPEKQ-SSYPASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALE 222
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----K 295
L D F+ L +Y +R+ P R S LSPYL+ G +S ++C +A
Sbjct: 223 QL----DIFIKDHLSDYKLERDFP-NVRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFH 277
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
L E T+L+EL+ RE + F ++ + + + + K S EH+
Sbjct: 278 LTNEGQQTWLDELL-WREFYQHILF---DFPHVSKHIPFKKNTQKIKWSHNPEHLTA--- 330
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLND 410
++ QT P+ +A +++ G MH +RM A +++W G + +
Sbjct: 331 WQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITAMFLCKNMLIDWRVGEQWFM-------- 382
Query: 411 KYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
++ IDG G W C G P F R N +KFD +G
Sbjct: 383 EHLIDGDLAANNGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPNG 427
>gi|408785938|ref|ZP_11197678.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
gi|408488127|gb|EKJ96441.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
Length = 479
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 175/475 (36%), Gaps = 81/475 (17%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFM 82
+ K PV+ W +D R+ DN AL+ A D +PV + ++ GA R Q ++
Sbjct: 1 MQTKASPVIVWFRKDLRLSDNLALLAAADHKGPV-IPVYIR----EKCCGALGRAQEWWL 55
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV-----------TDFSPL 131
L L +++T L L G+AE+ + + E GA + TD +
Sbjct: 56 HHSLTALHAALKKTGSRLV-LASGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTLK 114
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNV---------VPVWVASEKLEYSAKTLRGKINK 182
R +R + + R +HE P W A E E
Sbjct: 115 RALR--DEGLTVRSFSGHLLHEPSKLQTKSGGPYRVYTPFWRALEGGEEPHAPADAPDRL 172
Query: 183 LLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P ++P E +++W + DW + + W GED A E L
Sbjct: 173 NTPR---NWPRSET-LDEWQLLPKRPDWAREFSDI-----------WT-PGEDGAREKLS 216
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-ARKLCPEAI 301
DG LK Y R+ P K A S LSP+L G+IS + +R + I
Sbjct: 217 DFIDG----ALKGYEEGRDLPAK-DATSRLSPHLALGEISPATVWHATKGLSRHIASNDI 271
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
F +E IV RE + F+ P D + W + + DK +T+ T
Sbjct: 272 SRFRKE-IVWREFCYHLLFHFPELD--EKNWNDSFDAFSWRDDDKSFTAWTR-----GMT 323
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDG 416
P+ +A ++ +G MH +RM A +++W G + + D +D
Sbjct: 324 GYPIVDAGMRQLWRHGTMHNRVRMIVASFLIKHLLIDWRKGEK-------WFRDTL-VDA 375
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ W V G P F R N KFD DG YV+R V
Sbjct: 376 DPASNAANWQW----VAGSGADASPFF---RIFNPILQGEKFDGDG--DYVRRFV 421
>gi|384918306|ref|ZP_10018388.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. 357]
gi|384467791|gb|EIE52254.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. 357]
Length = 473
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 179/466 (38%), Gaps = 73/466 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W+ RD R+ D+ AL A + +PV + + D A +LG GL +
Sbjct: 6 PILVWIRRDLRLTDHAALSKAAGM-GRPVIPVFIRDHTVDALGAAPKWRLGL---GLAVY 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICNRV 145
+ L L G A + + + E GA + D + KD + R
Sbjct: 62 ADRLAAMGSALV-LRAGPAREVLERLLDETGADTVYWQRAYDPDSVERDTAVKDALRAR- 119
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY--LIDYPMLEQPI----- 198
V H + W + +T +G K+ Y + + + +P+
Sbjct: 120 --GVEAQSFAGHLLFEPW--------TVETRQGGYYKVYSPYWRAVQHRGVARPLSAPAE 169
Query: 199 ----EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
W + + DW + A +R+GA V + + GE AA + L F +
Sbjct: 170 LSAPHTWPTSERLDDWQ--LGAQMRRGAAV-AAPYQQVGEQAAQDRLAS----FARDAIA 222
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
+Y D N + S LS L G+IS +C R+A + + + +++EL V R+
Sbjct: 223 DY-RDGRNMVATDGCSMLSENLSLGEISPAQCWHAGRRAMQAGKDGAEPWVKEL-VWRDF 280
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
A + ++ P+ +W R + ++ E +++ +T P +A+ EM
Sbjct: 281 AWHLLWHTPHIADR--SW---RAGWQTFPWNEDERTAEVIAWKRGRTGIPFVDAALREMY 335
Query: 375 YNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYE--IDGRDP-NGYVGCM 426
G+MH RM Y K ++ W G D +E + DP + +G
Sbjct: 336 VTGRMHNRARMIVASYLTKHLMCHWKIG-----------MDWFEQCLTDWDPASNALGWQ 384
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
WS D P F R N + KFD DG AYV R +
Sbjct: 385 WSAGSGPDAS----PYF---RVFNPITQREKFDPDG--AYVTRWIA 421
>gi|448410083|ref|ZP_21575032.1| photolyase/cryptochrome [Halosimplex carlsbadense 2-9-1]
gi|445672363|gb|ELZ24939.1| photolyase/cryptochrome [Halosimplex carlsbadense 2-9-1]
Length = 461
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 165/392 (42%), Gaps = 69/392 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
++W RD R+RDN L A A+ VPV V F + +G ARQ F++RG+R L
Sbjct: 3 LFWHQRDLRLRDNRGLATAA--ADGPVVPVFVYDTDFLEHVG--ARQRAFLMRGVRELHE 58
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPL-REIRRCKDKICNRVSDS 148
E L + G + +P E GA +V + + P RE ++ + +C+R ++
Sbjct: 59 AYRERGGDL-VVRTGRPSEVLPEVAAEFGADTVVYNEHYRPARRERQQLVEAVCDR-TEI 116
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
T+ E D V P G+++ P + + +Q + K + +
Sbjct: 117 DTVAETDLVLVDP----------------GRLDDRYPNHSQFHNDWQQ-VPKQSPA-PAP 158
Query: 209 DWDSIIAAVLRKGAEVP----EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN-P 263
D D + A + A VP +I E+G DAA E D FL + + +Y R++ P
Sbjct: 159 DPDEL--ADIDSSATVPVPDADIDLPEAGYDAARE----RYDAFLQEGIYSYNDTRDDLP 212
Query: 264 L---KP-RALSGLSPYLHFGQISAQRCALEARKARKLCP----EAIDTFLEELIVRRELA 315
+ +P +A+S +SPYL G + + +A + + + EL RE
Sbjct: 213 MAVERPTQAVSRMSPYLAAGMVGIRELWRDATEIHDSVSGGEQRNVQKYRYELSW-REQN 271
Query: 316 DNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
+ +Y P NY S+ EW R+ E +++ +T PL +A
Sbjct: 272 YHLLYYNPDLPTENYKSIPNPIEW------------RDDPEEFEAWKRGETGYPLVDAGM 319
Query: 371 MEMVYNGKMHGFMRM----YWAKKIL-EWTTG 397
++ G +H R + K +L +W G
Sbjct: 320 RQLRAEGYVHNRPRQVVASFLTKHLLVDWRKG 351
>gi|365160129|ref|ZP_09356302.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624172|gb|EHL75256.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 476
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 106/456 (23%), Positives = 181/456 (39%), Gaps = 69/456 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLRHAIMDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P + KS ++ DK E + ++K +T P +A E+ G MH
Sbjct: 287 HYPF-----TVYRPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMH 339
Query: 381 GFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
RM + K +L W G A + D +D N +G W V
Sbjct: 340 NRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGS 387
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y++R V
Sbjct: 388 GADASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|386828473|ref|ZP_10115580.1| deoxyribodipyrimidine photolyase [Beggiatoa alba B18LD]
gi|386429357|gb|EIJ43185.1| deoxyribodipyrimidine photolyase [Beggiatoa alba B18LD]
Length = 477
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 52/265 (19%)
Query: 224 VPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P+I W + GE A +L + + + + Y T R+ P P ++S LSPYL
Sbjct: 189 LPKITWDSGFYQTWQVGEVHAQHLL----NQWCEQAMMEYATQRDFPANPVSVSHLSPYL 244
Query: 277 HFGQISAQRCALEARKARKLCPEAIDT----FLEELIVRRELADNFCFYQPNYDSLKGAW 332
HFG++S ++ KA+ L P AI T +L +L RE A ++ P+
Sbjct: 245 HFGELSPRQVFHAILKAQALNP-AITTGGNAYLRQL-YWREFAHYLLYHFPHT------- 295
Query: 333 EWARKSLKDHASD--KREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK- 389
K+L + +E+ +++ +T P+ +A E+ G MH +RM A
Sbjct: 296 --PEKALYSQFDNFPYQENTELLMAWQRGETGYPIIDAGMRELWTTGWMHNRVRMLVASF 353
Query: 390 ----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFG 444
+L W TG A + D +D N +G W + CG P +
Sbjct: 354 LTKNLLLPWQTG-------ARWFWDTL-VDADLANNTLGWQWVAGCGA-----DAAPYY- 399
Query: 445 KIRYMNYSGCKRKFDVDGYIAYVKR 469
R N + KFD DG Y++R
Sbjct: 400 --RIFNPTLQSVKFDPDG--QYIRR 420
>gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|427424953|ref|ZP_18915065.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|425698270|gb|EKU67914.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
Length = 480
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 107/258 (41%), Gaps = 36/258 (13%)
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
I A + G +GE+ A+E L D F+ RL +Y +R+ P R S LS
Sbjct: 197 IEAFFDPSVSKEQQGLWPAGENFALEQL----DIFIKDRLSDYKLERDFP-NVRGTSQLS 251
Query: 274 PYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLK 329
PYL+ G +S ++C +A L E T+L+ELI RE + F ++ +
Sbjct: 252 PYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELI-WREFYQHILF---DFPHVS 307
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA- 388
+ + + K + EH+ ++ QT P+ +A +++ G MH +RM A
Sbjct: 308 KHIPFKKDTQKIKWNHNPEHLIA---WQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITAM 364
Query: 389 ----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
+++W G + + ++ IDG G W C G P F
Sbjct: 365 FLCKNLLIDWRVGEQWFM--------EHLIDGDLAANNGGWQW--CA--STGTDAVPYF- 411
Query: 445 KIRYMNYSGCKRKFDVDG 462
R N +KFD +G
Sbjct: 412 --RIFNPIAQSKKFDPNG 427
>gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1]
Length = 635
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 198/483 (40%), Gaps = 87/483 (18%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QL 79
S+D K VV+W D R+ DN AL A D+A + VP+ + + Q A R ++
Sbjct: 136 SIDVKDA-VVHWFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHLRAPVRI 194
Query: 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPN----FVRECGASLLVTDFS-PLREI 134
FMLR L +++ ++ + I ++ E ++P+ + E GAS L + + E+
Sbjct: 195 DFMLRTLSVIKEDLAK-LDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDEL 253
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVP-----VWVASEKLEYSA--KTLRGKINKLLPEY 187
RR I + + V +VP + Y+ KT I++ L
Sbjct: 254 RREAAMIKDFAENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENL--- 310
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES---------GEDAAM 238
D L +P EK + + + + A + + + +G E GE A
Sbjct: 311 --DLLELYEPPEKNPDSARK-KFKKLFNAEIPEAPKSKRLGDEEKERLRSLWPCGEHEAK 367
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARK 295
+ L D F +R+ NY RN P A S LS +L G ISA+ C AR K +K
Sbjct: 368 KRL----DKFCEERIGNYHEKRNIPADA-ATSSLSVHLASGTISARTCVRTARDRNKTKK 422
Query: 296 L--CPEAIDTFLEELIVR---RELADNFCF------YQPNYDSLKGAWEWARKSLKDHAS 344
L + I T++ E+ R + + N+ + ++P Y ++ +++ DH +
Sbjct: 423 LNGGNDGIQTWISEVAWRDFYKHVLVNWPYVCMNKPFKPEYSNISWSYD------NDHFA 476
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTGPE 399
+ + +T P+ +A+ +M G MH RM + AK +L+W G +
Sbjct: 477 ----------AWCEGRTGFPIVDAAMRQMNTIGYMHNRCRMIVASFLAKDLLLDWRKGEK 526
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
++ + D NG G S+ GV Q P F R N KFD
Sbjct: 527 ------YFMEHLVDGDFASNNGGWGFSASV-GVDPQ-----PYF---RIFNPLLQSEKFD 571
Query: 460 VDG 462
DG
Sbjct: 572 PDG 574
>gi|410447903|ref|ZP_11301995.1| putative deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium
SAR86E]
gi|409979483|gb|EKO36245.1| putative deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium
SAR86E]
Length = 475
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 104/461 (22%), Positives = 188/461 (40%), Gaps = 63/461 (13%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W D R+ DN AL+ A+D+ ++ + N ++ + + L F+++ L +L++
Sbjct: 6 LIWFRTDLRLDDNPALLDAIDKCDEVAGIYIFSENQWNDHNESNVK-LSFLIKNLEILEK 64
Query: 92 NIEETFQILFFLFQGEAEDNIP----NF-VRECGASLLVTDFSPLREIRRCKDKICNRVS 146
++ I + ++P NF V + + + E +R D + ++
Sbjct: 65 SLS-NLNIPLITLNTNSFKSLPKDLNNFSVTNNINQVFWNNEFGINESKR--DDLSAQIL 121
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLR---GKINKLLPEY----LIDYPMLEQPIE 199
++ IH V +++ Y LR GK + + + ++ M I
Sbjct: 122 NNSNIH---------VSRFDDQVIYEPGILRTGQGKPFSVFTPFKRRWIENFDMNFLEIR 172
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
K + ++SI ++ + + +I +GEDAA L FL + ++Y
Sbjct: 173 KPSALKKSISLNNESSKIQYSKIHKVDIDLWPAGEDAAAARLSN----FLELKSRDYNQS 228
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL----CPEAIDTFLEELIVRRELA 315
RN+P+ S +SPYL G +S +RC LE K + I +++E IV RE
Sbjct: 229 RNSPIL-DGTSRISPYLALGILSPRRCILEGMKLNNFELTSGNKGICKWIDE-IVWREFY 286
Query: 316 DNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
N P SL ++ S+K D + F + +T P+ +A +M+
Sbjct: 287 RNIMHSFPKV-SLNKPFQDYTDSIKWRHCDNE-----LKAFYEGRTGFPIVDAGIRQMLT 340
Query: 376 NGKMHGFMR----MYWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
G MH +R M++ K +L +W G E + K IDG + G WS
Sbjct: 341 EGWMHNRLRMVVAMFFTKNMLHDWRLGEEFFM--------KNLIDGDFSSNNGGWQWSAS 392
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
D P F R N + FD +G ++K+ +
Sbjct: 393 TGTDAA----PYF---RIFNPITQSQNFDPNG--DFIKKFI 424
>gi|345853246|ref|ZP_08806153.1| deoxyribodipyrimidine photo-lyase [Streptomyces zinciresistens K42]
gi|345635300|gb|EGX56900.1| deoxyribodipyrimidine photo-lyase [Streptomyces zinciresistens K42]
Length = 456
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 103/249 (41%), Gaps = 38/249 (15%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G E GE+A L +L R+ Y DR++ L A S LSP+LHFG +S
Sbjct: 194 GLAEGGEEAGRTRLTA----WLRHRVSAY-EDRHDDLAGDATSRLSPHLHFGTLSPVELV 248
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
AR+A D F+ +L R F++ S A ++ DH +R
Sbjct: 249 HRARRA---GGPGADAFVRQLAWR-------DFHRQVLASRPDAATADYRARHDHWRSER 298
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKI-LEWTTGPEEAL 402
E +++ +T P+ +A+ ++ + G MH R+ + AK + ++W G L
Sbjct: 299 EAGEDIAAWKEGRTGYPVVDAAMRQLRHEGWMHNRGRLLTASFLAKTLYVDWRVGARHFL 358
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ +DG N + W V G RP R +N R++D DG
Sbjct: 359 DLL--------VDGDIANNQLNWQW----VAGTGTDTRP----NRVLNPVAQARRYDPDG 402
Query: 463 YIAYVKRIV 471
YV+R V
Sbjct: 403 --GYVRRWV 409
>gi|423398956|ref|ZP_17376156.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|423410080|ref|ZP_17387228.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
gi|401645588|gb|EJS63241.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|401650994|gb|EJS68562.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
Length = 476
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 106/454 (23%), Positives = 181/454 (39%), Gaps = 65/454 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDATFS--IGSAAK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G E+ I + + + + + + + P R K K+ +T E
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLE-GKGITCKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKNNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D+ E + F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDSTEEGAYKAFKKFFSSKLVSYSEGRDFP-DQNVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 --YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
Y L KS ++ DK E + ++K +T P +A E+ G MH
Sbjct: 291 TVYKPL-------NKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNR 341
Query: 383 MRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
RM + K +L W G A + D +D N +G W V G
Sbjct: 342 ARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGA 389
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 390 DASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 121/489 (24%), Positives = 189/489 (38%), Gaps = 115/489 (23%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ------FLGAKARQLGFM 82
P + W R+ D+ AL A K+ PV ++ ++DQ LGA R ++
Sbjct: 4 APTIVWFRESLRLSDHPALYAAA----KSGGPVVCSY-IYDQESSGLRHLGAATRW--WL 56
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLR-----E 133
+ LR LQ +++ T + +G A + RE AS + V P R E
Sbjct: 57 AQSLRALQADLK-TLGADLIIRRGRAAQVLVELARETRASAVYWNDVAQAGPRRVASSVE 115
Query: 134 IRRCKDKICNRV------SDSVTIHEVDAHN---VVPVWVASEKLEYSAKTLR--GKINK 182
+ + +RV D T+ D P W L K L G++
Sbjct: 116 AGLGEIGVASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKPLPTPGRLAA 175
Query: 183 L--LPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
+ + +D MLE W G ++ ++GE AA +
Sbjct: 176 VPNVVSLTVDELMLEPTRPDWAGGLRAT---------------------WQAGERAAQQR 214
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLC 297
L GS FL + +Y DR+ P A S LSP+L FG+IS ++ AR A R
Sbjct: 215 L-GS---FLESAVGSYAGDRDRP-DIDATSRLSPHLRFGEISPRQIWYAARFAAEERPAL 269
Query: 298 PEAIDTFLEELIVRRELADNFCF---------YQPNYDSLKGAWEWARKSLKDHASDKRE 348
+ ID FL E I RE + + + QP++D A+ W +D A+
Sbjct: 270 AKGIDKFLSE-IGWREFSRHLLYNNPDLATRNLQPSFD----AFPWT----QDDAA---- 316
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALA 403
+++ +T P+ +A E+ + G MH +RM A +L+W G +
Sbjct: 317 ----LAAWQRGRTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHLLLDWRQGEQ---- 368
Query: 404 IAIYLNDKYEID-GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ + + D G +P + W V G P F R N KFD +G
Sbjct: 369 --WFWDTLVDADAGSNPASW---QW----VAGSGADAAPYF---RVFNPVLQGEKFDANG 416
Query: 463 YIAYVKRIV 471
+YV+R V
Sbjct: 417 --SYVRRWV 423
>gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei
VT8]
Length = 463
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSG---LSPYLHFGQISAQRCAL 288
+GEDAA E L + FLT+R K+Y +R+ P AL G LSPYL G +S ++C +
Sbjct: 202 TGEDAAHEQL----EAFLTERAKDYKDNRDFP----ALDGTSQLSPYLANGVLSGRQCLI 253
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
A+++ L E ++T++ E I R+ + ++ P S+ A++ ++L + E
Sbjct: 254 AAKQS-GLSGEGVETWINE-IAWRDFYIHILYHYPRV-SMGRAFKEETEALAWNTPG--E 308
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
H E +++ +T P+ +A+ ++ G MH +RM
Sbjct: 309 HF---EAWKEGRTGIPIVDAAMRQLKATGWMHNRLRM 342
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 114/508 (22%), Positives = 191/508 (37%), Gaps = 119/508 (23%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLR 84
P+++W RD R+ DN L A Q+ + + F L Q L A AR + ++
Sbjct: 3 APILFWHRRDLRLSDNIGLAAARAQSAQ----LIGLFCLDPQILQSADMAPAR-VAYLQG 57
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSP------------ 130
L+ LQ+ ++ L L QG+ + IP ++ A + D P
Sbjct: 58 CLQELQQRYQQAGSRLLLL-QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAA 116
Query: 131 -----LREIR------RCKDKICNRVSDSVTIHEVDAHN------VVPVWVASEKLEYSA 173
+R ++ D+I + + +++ N PV +E ++ S
Sbjct: 117 LKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSP 176
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+ L + P L + P L+Q DWD E G
Sbjct: 177 EQL----TAIAPLLLSELPTLKQ---------LGFDWDGGFP--------------VEPG 209
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA+ L+ F + + +Y RN P + SGLSP L FG I ++ A A
Sbjct: 210 ETAAIARLQE----FCDRAIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWQAASAA 264
Query: 294 RKL-----CPEAIDTFLEELIVRRELADNFCFYQPN-----YDSLKGAWEWARKSLKDHA 343
L +I + +EL RE + ++ P+ Y SL + W
Sbjct: 265 HALSRSDEARNSIRVWQQEL-AWREFYQHALYHFPSLADGPYRSLWQQFPW--------- 314
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGP 398
+ RE ++T + +AQT P+ +A+ ++ G MH RM A I++W G
Sbjct: 315 -ENREALFTA--WTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGE 371
Query: 399 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF 458
+ + ++ +DG G WS G +P +R N + +KF
Sbjct: 372 QFFM--------QHLVDGDLAANNGGWQWSASS----GMDPKP----LRIFNPASQAKKF 415
Query: 459 DVDGYIAYVKRIVGGTKKRRADSLVSGK 486
D Y+KR + + L+SG+
Sbjct: 416 DATA--TYIKRWLPELRHVHPKDLISGE 441
>gi|367475309|ref|ZP_09474774.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
gi|365272410|emb|CCD87242.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
Length = 415
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 26/171 (15%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++GE AA + L + FLT + Y DR+ P A S LSP+L FG+IS ++ A
Sbjct: 139 QAGERAAQQRL----NDFLTSSVGTYAADRDRP-DVEATSRLSPHLRFGEISPRQIFHAA 193
Query: 291 RKA---RKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDH 342
R A R + ID FL E + RE + + + P N A+ W +D
Sbjct: 194 RFAAEERPALAKGIDKFLSE-VGWREFSRHLLYNNPDLATRNLQPTFDAFPWT----QDD 248
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
A+ +++ QT P+ +A E+ + G MH +RM A +++
Sbjct: 249 AA--------LTAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVK 291
>gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 492
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 161/388 (41%), Gaps = 61/388 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
V W+ D RV DN AL A N + + V +A + RQ F+L L L+Q
Sbjct: 9 VVWLRNDLRVTDNLALYAACQDPNASVLAVFIATPAQWEKHDMAPRQAAFLLENLTLVQH 68
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-EI-RRCKDK-ICNRVSDS 148
+ E L + + ++ V+ C F + EI R +DK + +R++DS
Sbjct: 69 ALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLADS 128
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-------LIDYPMLEQPIEKW 201
V H ++P S T G++ K+ + L++ P
Sbjct: 129 VVFHGYHDSLLLP--------PGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDA 180
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
G + ID +A EV + GE AA++ L+ F +++++Y R+
Sbjct: 181 RG--EPIDNTVELAPFSYPQREVDSEDF-PRGERAALQQLRR----FCREQVQDYDQQRD 233
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR--- 311
P P S LSPYL G +S ++C + R CP+ ++ T+ EL+ R
Sbjct: 234 FPALP-GTSKLSPYLALGIVSPRQC---FNRLRAECPDMLERREGGAFTWFNELVWREFY 289
Query: 312 RELA---DNFCFYQPNYDSLKGAW-EWA--RKSLKDHASDKREHIYTKEQFEKAQTADPL 365
R L C ++P AW +W R+S KD A+ +++ +T P+
Sbjct: 290 RHLIVSWPQLCKHRPF-----TAWTQWVKWRESPKDLAA-----------WQQGRTGYPI 333
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILE 393
+A+ ++ G MH +RM A +++
Sbjct: 334 VDAAMRQLNETGWMHNRLRMICASFLVK 361
>gi|242208527|ref|XP_002470114.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
gi|220730866|gb|EED84717.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
Length = 543
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 119/494 (24%), Positives = 182/494 (36%), Gaps = 91/494 (18%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGL 86
+VYWM D R RDN AL A +QA +++VP+ F L A AR++ F LR L
Sbjct: 17 IVYWMRIEDLRTRDNRALAQASEQAREDHVPLIALFVLSPHDYIAHDRSARRIDFTLRNL 76
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFV----RECGASLLVTDFS-PLREIRRCKDKI 141
R ++ ++ E + + NIP++V E A+ L + + E+RR K+
Sbjct: 77 RCIRSSLAE-LHVPLYTTTHTPRTNIPSYVLSLLNEWNATRLYANIEYEVDELRR-DIKV 134
Query: 142 CNRVSD-SVTIHEVDAHNVVP---VWVASEK-LEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
C + V V ++P V EK + LR L P P+
Sbjct: 135 CELAREKKVACTFVHDKCIIPPGKVLTKGEKGYTVYSPFLRAWTPHLTPSKGEADPLACA 194
Query: 197 PIEKWTGTR------------QSIDWDSIIAAVLRKGAEVPEIGWC-ESGEDAAMEVLK- 242
P QS+ D + L+ E I C +GEDAA E+L+
Sbjct: 195 PSPAANSPSIHNHPVYGKLFDQSVP-DEVDGFSLQDTEERDRIRTCWPAGEDAAKEILER 253
Query: 243 -----------------------GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFG 279
+K R+ Y D + + S LSPYL G
Sbjct: 254 FVNTMARSEQMGAVNPLSNGAKVPTKSPTKDSRIGKY-KDARDKVDADTTSRLSPYLAAG 312
Query: 280 QISAQRC-----ALEARKARK--LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW 332
ISA+ C L A KA K + E + I R+ + P S+ +
Sbjct: 313 VISARECIRATMQLSASKAPKVDVSRETGSGRWVQEIAWRDFYTHVVALFPRV-SMGRPF 371
Query: 333 EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR----MYWA 388
+ S+K A +H+ + ++ +T P+ +A + + G MH +R MY
Sbjct: 372 QEKLSSIKWEADTAGDHL---QAWKDGRTGVPIVDAGMRQALAMGWMHNRVRMVAAMYLV 428
Query: 389 KKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS------------ICGVHDQ 435
K ++ +W G + + IDG + G WS I + Q
Sbjct: 429 KDLMIDWRLGEKHFMETL--------IDGDLASNNGGWQWSASTGVDPAPYFRIFNPYTQ 480
Query: 436 GWKERPVFGKIRYM 449
K P IRY
Sbjct: 481 SQKADPTGDYIRYF 494
>gi|91204921|ref|YP_537276.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C]
gi|91068465|gb|ABE04187.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C]
Length = 475
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 112/474 (23%), Positives = 195/474 (41%), Gaps = 83/474 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ R+ R+ DN + A+ ++K + ++F R+L F+ L L+
Sbjct: 6 IVWLRRNLRLHDNKSFAAALRNSDKILPIFIFDTTILERFKNPHDRRLSFLANTLCLIND 65
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCK----------- 138
+++ L +F G+ D IP + D + P I R K
Sbjct: 66 ELKKLKGKLL-VFYGKPLDIIPKLAATLKIENIYADEDYEP-NNIERDKKVQELLGSNCT 123
Query: 139 -DKICNRV---SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ C+ + D V + A+ V ++ + + ++ A NKLL Y +
Sbjct: 124 LNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFR-KFIADNGSISHNKLLTNYSYN---- 178
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA-----AMEVLKGSKDGFL 249
++ T Q I+ +I + K + +IG+ ++ A VL D F+
Sbjct: 179 ---LDGKLYTPQDIELKTIDLNI-GKSEALKQIGYVYKEDELWQPKNAQNVL----DKFI 230
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
T+R+ Y D++ L S +SPYL FG +S + C +A A P +I T++ ELI
Sbjct: 231 TRRINRYKIDQDF-LYLDGTSTISPYLRFGLVSIRECYRKAFNAAS-NPGSI-TWINELI 287
Query: 310 VRRELADNFCFYQPN------YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RE ++ PN + K W ++K+E+ ++F A+T
Sbjct: 288 -WREFYATILYHFPNTVNEEFLEKYKNKIPW---------NNKKEYF---DKFINAETGY 334
Query: 364 PLWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTGPEEALAIAIYLNDKYEIDGRD 418
P+ +A+ ++V +G MH RM +++K +L+W G EE A +Y +D
Sbjct: 335 PIIDAAVKQLVGDGWMHNRARMIVASFFSKNLLLDWRKG-EEFFA-------QYLMDYEL 386
Query: 419 PNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ G W S CG Q P F R N + FD D Y+K+ +
Sbjct: 387 ASNVGGWQWASSCGTDAQ-----PYF---RIFNPYTQGKNFDPDA--EYIKKYL 430
>gi|407785596|ref|ZP_11132743.1| deoxyribodipyrimidine photo-lyase [Celeribacter baekdonensis B30]
gi|407202546|gb|EKE72536.1| deoxyribodipyrimidine photo-lyase [Celeribacter baekdonensis B30]
Length = 465
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 47/317 (14%)
Query: 175 TLRGK-INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
T+R + + LLP + +P + W + +DW + +++GA V + C G
Sbjct: 149 TVRARSVADLLPAPDVIWP------QDWPKSEALVDWQ--MGGKMQRGAAV-VLPHCHIG 199
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA+ L D F+ + ++ Y R+ P +P SGLS L +G+IS +R A
Sbjct: 200 EAAALARL----DAFIERHVEAYKAKRDFPAEP-VCSGLSENLTYGEISPRRIWHAGWHA 254
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
+ + FL+EL V RE A + + +P+ W + D
Sbjct: 255 MEAGAAGAEHFLKEL-VWREFAYHLLYREPDLAHRNHREGWDEFDWRGENDD-------A 306
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYL 408
E + + +T +A+ EM G MH RM + K +L +W G +
Sbjct: 307 EAWRRGRTGVRFVDAAMREMYVTGVMHNRARMIVASFLTKHLLTDWRIG-------RAWF 359
Query: 409 NDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
D ID +G W + CG P F R N G KFD DG AY+
Sbjct: 360 EDSL-IDWDPAANAMGWQWVAGCGP-----DAAPYF---RVFNPDGQAEKFDADG--AYL 408
Query: 468 KRIVGGTKKRRADSLVS 484
+ + + +++ +S
Sbjct: 409 RAWIAEGEAEPSETALS 425
>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
Length = 476
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 177/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ + L + + ET
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFP--MGSASK---WWLHHAIIDVKKQLET 63
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
+ +G ++ I + + + G + + + + + K+ + D + E +
Sbjct: 64 LGSTLIIRKGNTQEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGIVCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSLP 173
Query: 216 AVL--RKGAEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L + +P I W E D E + F + +L +Y R+ P S
Sbjct: 174 ASLFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFP-NQNVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS ++ DK E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB5]
Length = 487
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 154/387 (39%), Gaps = 69/387 (17%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD----QFLGAKARQLG----- 80
PV+ W D R+ D+ AL QA + P+ + +FD Q +AR LG
Sbjct: 8 PVIVWFRDDLRLSDHPAL----HQAAASGGPL-ICIYVFDEDSAQLRSPQARPLGGASRW 62
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL---VTDFSPLREIRRC 137
++ + LR L ++E+ L L +G A I R+ AS + + +P R
Sbjct: 63 WLAQSLRALAASLEKRGARLI-LRRGPAAAIIAELARQVDASAVHWNEIEIAPHR----- 116
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-----LIDYP 192
+ + +++++++ +D H +AS E K RG + P + L D P
Sbjct: 117 --AVADDLAEALSVAGIDHHRHRGDLLASPA-EVRTKEGRG-LRVFTPFWRRVLGLGDPP 172
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSK 245
L P K Q D + + +L E E W GE AA + L
Sbjct: 173 KL-LPAPKTLSAAQGPSGDQLDSWML----EPTEPDWAGGLRESWTPGEGAAQDNLTAFL 227
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCPEAID 302
D L Y R+ P A S LSP+L FG+IS ++ AR A R ID
Sbjct: 228 DA-----LPGYTEGRDRP-DCAATSRLSPHLRFGEISPRQVWYAARFAAAERPAIAGDID 281
Query: 303 TFLEEL----IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
FL EL R L D+ + N + A+ W + HA +++
Sbjct: 282 KFLSELGWREFCRHLLHDHPDLAERNLQASFDAFPWITDAAALHA------------WQR 329
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRM 385
T P+ +A E+ + G MH +RM
Sbjct: 330 GCTGYPIVDAGMRELWHTGVMHNRVRM 356
>gi|403057695|ref|YP_006645912.1| deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402805021|gb|AFR02659.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 488
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 161/384 (41%), Gaps = 53/384 (13%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
V W+ D RV DN AL A N + V +A + RQ F+L L L+Q+
Sbjct: 5 VVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPAQWEKHDMAPRQAAFLLENLTLVQQ 64
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-EI-RRCKDK-ICNRVSDS 148
+ E L + + ++ + C F + EI R +DK + +R++DS
Sbjct: 65 ALAEKGIPLHYHESADFSASVDWLAQFCAQQQATDLFYNYQYEINERLRDKQVKDRLADS 124
Query: 149 VTIHEVDAHNVVP---VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR 205
V H ++P V + ++ R K L E D + P +
Sbjct: 125 VVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLES--DTTCVPAPDARGEPIN 182
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
+++ +A + EV + SGE AA++ L+ F +++++Y R+ P
Sbjct: 183 NTVE----LAPFSYQQREVDGDDF-PSGERAALQQLRR----FCREQVQDYDQQRDFPAL 233
Query: 266 PRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR---RELA 315
P S LSP+L G +S ++C + R CPE ++ T+ EL+ R R L
Sbjct: 234 P-GTSKLSPHLALGIVSPRQCF---NRLRAECPEMLERREGGAFTWFNELVWREFYRHLI 289
Query: 316 ---DNFCFYQPNYDSLKGAW-EWA--RKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
C ++P AW +W R+S +D A+ +++ +T P+ +A+
Sbjct: 290 VSWPQLCKHRPF-----TAWTQWVKWRESPEDLAA-----------WQQGKTGYPIVDAA 333
Query: 370 QMEMVYNGKMHGFMRMYWAKKILE 393
++ G MH +RM A +++
Sbjct: 334 MRQLNETGWMHNRLRMICASFLVK 357
>gi|365857119|ref|ZP_09397117.1| putative deoxyribodipyrimidine photo-lyase [Acetobacteraceae
bacterium AT-5844]
gi|363716733|gb|EHM00129.1| putative deoxyribodipyrimidine photo-lyase [Acetobacteraceae
bacterium AT-5844]
Length = 484
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 225 PEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
PE W G++D FL L YP RN P + S LSP+LH+G+I
Sbjct: 198 PEPDWAAGFSSLWQPGEAGARDQLQRFLNDALAEYPDGRNRPGE-DGSSRLSPHLHWGEI 256
Query: 282 SAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
SA++ R++ A DTFL+E I+ RE + N ++ P R
Sbjct: 257 SARQVWHAVRESEAPA-SAADTFLKE-IIWREFSHNILWHHPGLPEAP-----LRPEYTQ 309
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ +I + +++ +T P+ +A ++ G MH +RM
Sbjct: 310 FPYNR--NIEAQRAWQRGRTGYPIVDAGMRQLWRLGWMHNRVRM 351
>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
Length = 472
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 107/254 (42%), Gaps = 48/254 (18%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A VLK F+ + LKNYP R+ P + S LSPYLHFG+IS ++
Sbjct: 196 KPGEKNAQIVLKK----FIKENLKNYPAHRDRP-DISSTSHLSPYLHFGEISIRQVWTAI 250
Query: 291 RKAR---KLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDH 342
+A K +A D FL +LI RE A ++ P N+ + ++W +
Sbjct: 251 TQATIQDKNLQKAADVFLRQLIW-REFAYYLLWHFPQMGKSNFRNQFDNFKWKKNKNWLR 309
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTG 397
A ++K T P+ +A E+ G MH +RM A +++W G
Sbjct: 310 A------------WQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVKDLMIDWREG 357
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
E+ + +D N +G W I G G P F R N +K
Sbjct: 358 -EKWFWNTL-------LDADLANNALGWQW-IAGC---GPDAAPYF---RIFNPILQSKK 402
Query: 458 FDVDGYIAYVKRIV 471
FD DG Y+KR +
Sbjct: 403 FDPDG--TYIKRWI 414
>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
Length = 476
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/455 (21%), Positives = 176/455 (38%), Gaps = 67/455 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P ++ K+ + + E + ++K +T P +A E+ G MH
Sbjct: 288 YPF-----TVYKPLNKNFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHN 340
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM + K +L W G A + D +D N +G W V G
Sbjct: 341 RARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSG 388
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD DG Y+++ V
Sbjct: 389 ADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|402819360|ref|ZP_10868928.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
gi|402511507|gb|EJW21768.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
Length = 474
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 111/462 (24%), Positives = 182/462 (39%), Gaps = 67/462 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YW +D R+ DN AL+HA + K +P+ + F+ D+ LG A + + L L+
Sbjct: 5 VIYWFRQDLRLADNPALLHAA-HSGKTVIPIFI-FDPDDRSLGMAAS--WWRQQSLAKLE 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV----TDFSPLREIRRCKDKICNRVS 146
+++ L F ++G + + A +V D + + K + N +
Sbjct: 61 AALKKIGGKLSF-YEGRPVEVLQKLSDFYEADEIVWNRQYDGYSVSRDKEIKQTLPNSGT 119
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY---LIDYPMLEQPIEKWTG 203
++ +A + W+ K G K+ Y + E P T
Sbjct: 120 GNIECKSFNASLLFEPWLIQNK--------SGSYFKVFTPYWRQCMAGNAPEAPCPPPTE 171
Query: 204 TRQSIDWDS----IIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
R D D + A+ L A++ W GE A + + F+ + L+ Y
Sbjct: 172 LRSHPDVDPFQIPLPASPLTADADLIAEEWT-PGEAGAYQQF----ENFIEEGLEIYAEF 226
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALE---ARKARKLCPEAIDTFLEELIVRRELAD 316
R+ P +P A S LSPYL +G+IS ++ + + K + I FL E I RE +
Sbjct: 227 RDFPDRP-ATSRLSPYLRWGEISPRQIWSKIQFVKSHEKFSEQTISKFLAE-IGWREFSH 284
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKR--EHIYTKEQFEKAQTADPLWNASQMEMV 374
+ ++ P E A ++L+ +D E+ Q++ T PL +A E+
Sbjct: 285 HLIYHVP---------EMATQNLQPSFNDFPWLENEEALLQWQAGNTGYPLVDAGMRELR 335
Query: 375 YNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
G MH +RM A + ++W G + Y D+ +D N G W
Sbjct: 336 RTGYMHNRVRMITASFLIKHLMIDWRAGEK-------YFWDRL-LDACPANNITGWQW-- 385
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
V G P F R N KFD G AY KR +
Sbjct: 386 --VAGSGADAAPFF---RIFNPIIQGEKFDPQG--AYTKRFI 420
>gi|374623477|ref|ZP_09695986.1| Deoxyribodipyrimidine photo-lyase [Ectothiorhodospira sp. PHS-1]
gi|373942587|gb|EHQ53132.1| Deoxyribodipyrimidine photo-lyase [Ectothiorhodospira sp. PHS-1]
Length = 485
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 37/196 (18%)
Query: 224 VPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P I W + GED A L + FL + Y TDR+ P +P S +SP+L
Sbjct: 189 LPRIPWDQGMAACWQPGEDGAHRAL----ERFLAGAVLTYKTDRDLPGQP-GTSRMSPHL 243
Query: 277 HFGQISAQRCA-----LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN-----YD 326
HFG+I ++ L+A+ A +++TF+ E I RE A + F+ P+ D
Sbjct: 244 HFGEIGPRQLIRACRYLQAQGAGATAGASVETFVRE-IGWREFAFHLLFHFPHTPEQPLD 302
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386
+ W + +D+A+D E + + +T PL +A E+ + G MH +RM
Sbjct: 303 ERFTDFPW--RDARDYAADL-------EAWRRGRTGIPLVDAGMRELWHTGWMHNRVRMI 353
Query: 387 WAKKILE-----WTTG 397
A +++ W TG
Sbjct: 354 VASLLVKNLRIPWQTG 369
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 107/458 (23%), Positives = 183/458 (39%), Gaps = 65/458 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFKATQSGEV--VPVYVHDETFS--MGSASK--WWLHHAIIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G E+ I + + + G + + + + P R ++ ++ +T E
Sbjct: 65 GSTLI-IRKGSTEEEILSLIEQLGITAVYWNICYDPDR-LQFNQNMKMMLEDKGITCKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 123 NSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSL 172
Query: 215 AAVLR--KGAEVPEIGWC---ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
L + +P I W ES D E + F + +L +Y R+ P A
Sbjct: 173 PESLSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFP-NQNAH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 --YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
Y L K+ + + E + T ++K +T P +A E+ G MH
Sbjct: 291 TVYKPL-------NKNFEHFPWNNEEELLT--VWQKGETGYPFIDAGMRELWQTGFMHNR 341
Query: 383 MRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
RM + K +L W G A + D +D N +G W V G
Sbjct: 342 ARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGA 389
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
P F R N KFD DG Y+++ V K
Sbjct: 390 DASPYF---RIFNPITQGEKFDKDG--EYIRKWVPELK 422
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 114/508 (22%), Positives = 191/508 (37%), Gaps = 119/508 (23%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLR 84
P+++W RD R+ DN L A Q+ + + F L Q L A AR + ++
Sbjct: 2 APILFWHRRDLRLSDNIGLAAARAQSAQ----LIGLFCLDPQILQSADMAPAR-VAYLQG 56
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSP------------ 130
L+ LQ+ ++ L L QG+ + IP ++ A + D P
Sbjct: 57 CLQELQQRYQQAGSRLLLL-QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAA 115
Query: 131 -----LREIR------RCKDKICNRVSDSVTIHEVDAHN------VVPVWVASEKLEYSA 173
+R ++ D+I + + +++ N PV +E ++ S
Sbjct: 116 LKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSP 175
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+ L + P L + P L+Q DWD E G
Sbjct: 176 EQL----TAIAPLLLSELPTLKQ---------LGFDWDGGFP--------------VEPG 208
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA+ L+ F + + +Y RN P + SGLSP L FG I ++ A A
Sbjct: 209 ETAAIARLQE----FCDRAIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWQAASAA 263
Query: 294 RKL-----CPEAIDTFLEELIVRRELADNFCFYQPN-----YDSLKGAWEWARKSLKDHA 343
L +I + +EL RE + ++ P+ Y SL + W
Sbjct: 264 HALSRSDEARNSIRVWQQEL-AWREFYQHALYHFPSLADGPYRSLWQQFPW--------- 313
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGP 398
+ RE ++T + +AQT P+ +A+ ++ G MH RM A I++W G
Sbjct: 314 -ENREALFTA--WTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGE 370
Query: 399 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF 458
+ + ++ +DG G WS G +P +R N + +KF
Sbjct: 371 QFFM--------QHLVDGDLAANNGGWQWSASS----GMDPKP----LRIFNPASQAKKF 414
Query: 459 DVDGYIAYVKRIVGGTKKRRADSLVSGK 486
D Y+KR + + L+SG+
Sbjct: 415 DATA--TYIKRWLPELRHVHPKDLISGE 440
>gi|347760850|ref|YP_004868411.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
gi|347579820|dbj|BAK84041.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
Length = 466
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 153/389 (39%), Gaps = 48/389 (12%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
R P V W D R+ DN AL A Q PV + + D A + ++ L
Sbjct: 4 RAPTVMWFRDDLRLADNPALTDAATQG-----PV-ICLYVHDPAFALGAAERWWLHDALT 57
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
L ++ L + +G A+ + ++ GA+ +V + R ++ +
Sbjct: 58 ALDHDLRARGGQLCIM-EGSAQAVVQWLAQQAGATAVVWN----RRYGGPARQVDTDIKT 112
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
++ + +DA + P + E + +T +G ++ + +E P+ S
Sbjct: 113 ALKVMGIDARSH-PGNMLHEP--WQVRTRQGTPFRVYTPWWRAVQAMEAPLPP-VSVPAS 168
Query: 208 IDWDSIIAAV---------LRKGAEVPEIGWCESGEDA---AMEVLKGSKDGFLTKRLKN 255
+ + S+ AV LR P+ W + D + + D F+ KR+
Sbjct: 169 LTFASLPPAVGEQQLAPSALRLLPTRPD--WAQGLRDTWQPGEQAGQARLDSFVAKRMAG 226
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELA 315
Y R+ P +P A S LSPYL FG +S+ R A A K E FL E + R+ A
Sbjct: 227 YARQRDLPARP-ATSALSPYLRFGHVSS-RQVWHAVAAGKEMDEDGACFLSE-VGWRDFA 283
Query: 316 DNFCFYQPNYDSLKGAWEWARKSLKDHASDK--REHIYTKEQFEKAQTADPLWNASQMEM 373
F P E A +SL+ R + +++ +T P+ +A E+
Sbjct: 284 HATLFEFP---------EMATRSLRPEYDRMPWRTDPAALQAWQQGRTGYPIVDAGMREL 334
Query: 374 VYNGKMHGFMRMYWAK-----KILEWTTG 397
+ G MH +RM A +L+W G
Sbjct: 335 WHTGWMHNRVRMIVASFLTKHLLLDWRAG 363
>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
Length = 476
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 106/457 (23%), Positives = 179/457 (39%), Gaps = 71/457 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A +PV V F +G+ ++ ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--LPVYVHDETFS--IGSASK--WWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
P Y L K+ + + E + ++K +T P +A E+ G M
Sbjct: 288 YPFTVYKPL-------NKNFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTGFM 338
Query: 380 HGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
H RM + K +L W G A + D +D N +G W V
Sbjct: 339 HNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAG 386
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD DG Y+++ V
Sbjct: 387 SGADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 114/286 (39%), Gaps = 47/286 (16%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L + F+ L Y +R+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----NEFVVHHLSGYKRERDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASLEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P D E RK E + T ++K T P+ +A E+ G MH
Sbjct: 287 PKLDC-----ENFRKEFDAFPWQNDEQLLTC--WQKGMTGYPIIDAGMRELWATGYMHNR 339
Query: 383 MRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQG 436
+RM A +++W +G + L +D N W + CG
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTL--------VDADLANNSASWQWVAGCGA---- 387
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
P F R N +KFD DG Y+++ + + + S+
Sbjct: 388 -DAAPYF---RIFNPVLQSQKFDPDG--VYIRQWIPELAQLNSQSI 427
>gi|449549826|gb|EMD40791.1| hypothetical protein CERSUDRAFT_149213 [Ceriporiopsis subvermispora
B]
Length = 568
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 112/493 (22%), Positives = 189/493 (38%), Gaps = 92/493 (18%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGL 86
V+YWM +D R+ DN AL A Q+ +NNVP+ F L Q A AR++ FMLR L
Sbjct: 45 VIYWMRMQDLRITDNRALAQASAQSQENNVPLLALFVLSPQDYIAHDRGARRIDFMLRNL 104
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFV----RECGASLLVTDFSP-----LREIRRC 137
R L+ ++ + I ++ +P F+ ++ AS L + R+IR C
Sbjct: 105 RELKASLADV-NIPLYVTSHAPRRTLPEFILSLLKKWNASHLFANIEHEVDELRRDIRVC 163
Query: 138 K-----DKICNRVSD-------SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI----- 180
+ + C V+D VT + + V W+ + + K+ +
Sbjct: 164 QLAKESNIACAFVNDKCVIAPGEVTTKDGRGYTVYSPWLRAWLPHLTPKSGEDPLAAAAR 223
Query: 181 ----------NKLLPEYLIDYPMLEQPIEKWT------GTRQSIDWDS-------IIAAV 217
NK+ E L P+ E+ +E + R SI W + I+
Sbjct: 224 PAANPKSIYQNKIFGE-LFSIPVPEE-VEGFALEDADEKERLSICWPAGEDAAHKILERF 281
Query: 218 LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLH 277
L A ++G + + A K + R+ Y D + + S LSPYL
Sbjct: 282 LYTMARYAQLGAVDPLSEGADSPTKNPEK---NTRIGKY-KDVRDRVDADTTSRLSPYLA 337
Query: 278 FGQISAQRCALEARKARKLCPEAIDTFLEELIVR--RELA--DNFCFYQPNYDSLKGAWE 333
G ISA++C + + +D + + R +E+A D + Y +
Sbjct: 338 SGIISARQCIRATLELSGNKNQVVDASRDTGVGRWVQEIAWRDFYTHILALYPRVSMGRP 397
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR----MYWAK 389
+ K EH+ + +++ +T P+ +A+ + + G MH MR MY K
Sbjct: 398 FLEKFAGVKWETNEEHL---QAWKEGRTGVPIVDAAMRQGLTMGWMHNRMRMTTAMYLVK 454
Query: 390 KIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS------------ICGVHDQG 436
++ +W G + + + +DG + G WS I + Q
Sbjct: 455 DLMIDWRLGEKHFMEMF--------VDGDLASNNGGWQWSASTGVDPAPYFRIFNPYSQS 506
Query: 437 WKERPVFGKIRYM 449
K P IRY
Sbjct: 507 QKADPTGDYIRYF 519
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 163/389 (41%), Gaps = 54/389 (13%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV---AFNLFDQFLGAKARQLGFM 82
K+ P++ W +D R+ DN AL A +++ +PV + GA+ L +
Sbjct: 6 KEPNPILLWFRKDLRLDDNHALQSAA-TSSRPLIPVYIREPGVTERGPLGGAQEWWLHYS 64
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
L L++ + L GEA + V+E GA +V + R ++
Sbjct: 65 LAALQIALDAVGSKL----ILRHGEALTVLEKLVKETGAEAVVWN----RRYDPAGVEVD 116
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ------ 196
++ ++ ++A++ + +L + LR Y + EQ
Sbjct: 117 TQIKKALRSKGIEANSF------AGQLLHEPTRLRTGTGNHYKTYTPFWRAFEQSGEPPF 170
Query: 197 PIE---------KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
PIE +W + S+D S++ A +E +I W GE AA++ LK DG
Sbjct: 171 PIEAPRRLLAPGRWPQS-DSLDAWSLLPAKPNWASEFADI-WT-PGEAAALDKLKDFVDG 227
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-ARKLCPEAIDTFLE 306
L +Y R+ P KP A S LSP+L G+IS R R K+ + + F +
Sbjct: 228 ----ALNDYAIGRDFPDKP-ATSLLSPHLALGEISPARMWHATRGLPDKVGTDNVVRFRK 282
Query: 307 ELIVRRELADNFCFYQP-NYDSLKGA-WEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
E+I R FC++Q ++ L+ A W + KR + +++ QT P
Sbjct: 283 EIIWR-----EFCYHQLFHFPKLRTANWNDRYDDFPWLSDAKR-----LKSWQRGQTGYP 332
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILE 393
+ +A ++ +G MH +RM A +++
Sbjct: 333 IVDAGMRQLWRHGWMHNRVRMIAASFLIK 361
>gi|294055436|ref|YP_003549094.1| deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
Length = 476
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
ES + + E K D FL+ R++ Y TDR+ P S LSPYLHFGQI ++ E
Sbjct: 201 ESKWEPSEEGAKQQVDEFLSLRVERYDTDRDRP-DLDGTSALSPYLHFGQIGPRQLVHEL 259
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFY---------QPNYDSLKGAWEWARKSLKD 341
L + FL+E I RE A N ++ QP Y+S WE
Sbjct: 260 ELRADLEEQGPFIFLKE-IYWREFAYNVLYHFPRTAESPLQPQYESF--PWE-------- 308
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ +++ +T P+ +A ++ G MH +RM
Sbjct: 309 ------QNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVRM 346
>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 476
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 176/455 (38%), Gaps = 67/455 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E T
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLE-T 63
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
+ +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 64 LGSTLIIRKGNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P + K K+ + + E + ++K +T P +A E+ G MH
Sbjct: 288 YP-FTVNKP----LNKNFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHN 340
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM + K +L W G A + D +D N +G W V G
Sbjct: 341 RARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSG 388
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD DG Y+++ V
Sbjct: 389 ADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 140/372 (37%), Gaps = 46/372 (12%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
++W RD R+ DN AL HA A+ +P V + + F+ L L +
Sbjct: 9 LHWFRRDLRLTDNTAL-HAAQTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGNLESLAK 67
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP---LREIRRCKDKICNRVSDS 148
N+E L + GE I +RE GA+ L T+ P + I +CN++ +
Sbjct: 68 NLEAIGSRLI-IRSGETVSEIERLIRETGATALYTNRDPDPYGQTIETHVIALCNKLGVA 126
Query: 149 V-TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK--WTGTR 205
T + H V + Y T K LP+ QP+ K G
Sbjct: 127 FHTCKDAVLHQPQEV-LTGNGGPYRVFTPYSKNWLSLPK--------AQPLSKVRTLGDA 177
Query: 206 QSIDWDSI-IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
S S+ + V+ P GE AA + +K D RL Y RN P
Sbjct: 178 PSPKIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSV---RLPRYEETRNFPS 234
Query: 265 KPRALSGLSPYLHFGQISA----QRC--ALEARKARKLCPEAIDTFLEELIVRRELADNF 318
P S LSP L +G IS RC AL + I+T+++EL R
Sbjct: 235 VP-GTSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIKELAWREFYMAVL 293
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE-----QFEKAQTADPLWNASQMEM 373
FY ++ D D R + ++ +++ +T PL +A ++
Sbjct: 294 HFYPEVLET-------------DFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQL 340
Query: 374 VYNGKMHGFMRM 385
+ G MH +RM
Sbjct: 341 LATGWMHNRVRM 352
>gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
calcoaceticus RUH2202]
gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
calcoaceticus RUH2202]
Length = 480
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 38/250 (15%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GED A+E L D F+ L +Y +R+ P + S LSPYL+ G +S ++C
Sbjct: 215 TGEDFALEQL----DLFINDHLSHYKLERDFP-NVKGTSQLSPYLNLGILSIRQCLQALF 269
Query: 292 KAR----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
+A L E T+L+EL+ RE + F ++ + + + + + + +
Sbjct: 270 RAEHGNFHLTNEGQQTWLDELL-WREFYQHILF---DFPHVSKHYPFKKNTQNIKWENNQ 325
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEAL 402
EH+ ++ QT P+ +A ++ G MH +RM A +++W G + +
Sbjct: 326 EHLVA---WQNGQTGIPIIDAGMRQLQKTGWMHNRVRMITAMFLCKNLLIDWRVGEQWFM 382
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
++ IDG G W C G P F R N +KFD +G
Sbjct: 383 --------QHLIDGDLAANNGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPNG 427
Query: 463 YIAYVKRIVG 472
Y+++ V
Sbjct: 428 --DYIRQWVN 435
>gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 463
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 148/382 (38%), Gaps = 68/382 (17%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL-GAKARQLGFMLRGLR 87
P + W D R+ DN AL+ +A K P L D L GA AR + L G
Sbjct: 7 APTIVWFREDFRIADNMALL----EAEKRGQPTLCIVILDDAHLPGAAAR---WWLHGA- 58
Query: 88 LLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTD--FSP--------LREI 134
R+++ET + + +F+G A + VR+ GA + + + P ++
Sbjct: 59 --IRSLDETLRGMGGALHVFRGAARAVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKAD 116
Query: 135 RRCKDKICNRVSDSVTIHE---VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + + R +HE V +V P + + + PE L+
Sbjct: 117 LRAR-GLTVRSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFA 175
Query: 192 PMLEQPIEKWTGTRQS------IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
P P T Q DW + + G E E+G D + L+
Sbjct: 176 PPPPMPDSLITRHEQDGLLPRHPDWAGGLRDMWSPGEE-------EAG-DQLSDFLRHDG 227
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
G+ T R ++P D A S LSP+L FG +S + A RK CP D FL
Sbjct: 228 AGYATAR--DFPGDE-------ATSRLSPFLRFGHVSPAQVWHAA--TRKACP---DKFL 273
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH--ASDKREHIYTKEQFEKAQTAD 363
EL R+ A + F+ P+ A ++L+ A R +++ QT
Sbjct: 274 MEL-GWRDFAWSLLFFNPDL---------ATRNLRPEFDAMPWRHDPGGLAAWQRGQTGY 323
Query: 364 PLWNASQMEMVYNGKMHGFMRM 385
PL +A E+ + G MH +RM
Sbjct: 324 PLVDAGMRELWHTGWMHNRVRM 345
>gi|291277653|ref|YP_003495244.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii
AaR/Sc]
gi|383327305|ref|YP_005353190.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii
str. GAT-30V]
gi|289657737|gb|ADD14598.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii
AaR/Sc]
gi|378931931|gb|AFC70437.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii
str. GAT-30V]
Length = 478
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
+ F+ R+ Y TDR+ L S +SPYL FG IS + C +A A L P + T++
Sbjct: 227 NKFIANRINFYKTDRD-FLYRNGTSTISPYLRFGLISIRECYRKAFNA-SLNPGTV-TWI 283
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
ELI RE ++ PN + + ++ K ++K+E+ +F A+T P+
Sbjct: 284 NELI-WREFYATILYHFPNTVNEEFLEKYRNKI---PWNNKKEYF---NKFINAETGYPI 336
Query: 366 WNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
+A+ +++ +G MH RM ++ K +L+W G EE A +Y +D +
Sbjct: 337 IDAAVKQLISDGWMHNRSRMIVASFFTKNLLLDWRKG-EEFFA-------QYLMDYELAS 388
Query: 421 GYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
G W S CG Q P F R N + FD D Y+K+ + KK
Sbjct: 389 NVGGWQWASSCGTDAQ-----PYF---RIFNPYTQGQHFDPDA--EYIKKYLPTLKK 435
>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
Length = 480
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL + +Y +DR + S LSP+LHFG+IS ++ +++ DT+L E
Sbjct: 220 FLKAAVSDY-SDRRDLPGQSGTSRLSPHLHFGEISPRQVWHAVKQSDHARTGGADTYLSE 278
Query: 308 LIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
I RE + N ++ P N+ S A+EW D DK + ++K QT
Sbjct: 279 -IAWREFSYNLLYHFPDLPEANFQSKFDAFEW------DECEDKL------KAWQKGQTG 325
Query: 363 DPLWNASQMEMVYNGKMHGFMRM 385
P+ +A E+ G MH +RM
Sbjct: 326 YPIVDAGMRELWATGWMHNRVRM 348
>gi|194334030|ref|YP_002015890.1| deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
Length = 477
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 118/473 (24%), Positives = 188/473 (39%), Gaps = 87/473 (18%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG- 85
KR V+ W +D R+ DN AL A ++ V + L D G Q+G R
Sbjct: 2 KRKTVICWFRQDLRLEDNPALFVAAEEGY-----VLPVYILDDSSPGT--WQMGSATRCW 54
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICN 143
L ++ +F +F+GE + + R+ A +V + + P R ++R +
Sbjct: 55 LHHSLVSLNRSFDGKLGIFRGEPLEILKTLARQHKAEKIVWNRCYEPWR-MKRDQGIKAT 113
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLE--------YSAKTLRGKINKLLPEYLIDYP--- 192
++ + EV + N +W E L+ ++ RG +N L P + P
Sbjct: 114 LQAEGI---EVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAPQRM 170
Query: 193 MLEQPIEKWTGTRQ-----SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
++ I+ + SI WDS + I GE++A + L
Sbjct: 171 LMADTIDNSISVQDLNLLPSIPWDSQL------------ISHWSVGENSARQSLLR---- 214
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL + L Y R+ P + +S LSP LHFG++S EA++ + +D FL E
Sbjct: 215 FLDQGLNGYKEGRDFPGQ-NHVSRLSPALHFGELSPNTVWYEAKRCGS--GQDLDHFLSE 271
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE---QFEKAQTADP 364
L RE A ++ N+D K+L+ A D ++ E ++++ T P
Sbjct: 272 L-GWREFAYTLLYH--NHDM-------PEKNLQS-AFDAFPWVHNDETLIRWQQGMTGYP 320
Query: 365 LWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
L +A E+ G MH +RM + K +L W G + + +D +D
Sbjct: 321 LVDAGMRELWQTGYMHNRVRMITGSFLVKNLLLHWHYGQQ-------WFHDCL-LDADLA 372
Query: 420 NGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
N G W + CGV P F R N KFD DG Y R V
Sbjct: 373 NNSAGWQWIAGCGV-----DAAPYF---RVFNPVRQGEKFDPDG--TYTLRFV 415
>gi|423575239|ref|ZP_17551358.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
gi|401209847|gb|EJR16604.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
Length = 476
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 100/455 (21%), Positives = 176/455 (38%), Gaps = 67/455 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P ++ K+ + + E + ++K +T P +A E+ G MH
Sbjct: 288 YPF-----TVYKPLNKNFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHN 340
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM + K +L W G A + D +D N +G W V G
Sbjct: 341 RARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSG 388
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD DG Y+++ V
Sbjct: 389 ADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|359148080|ref|ZP_09181316.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. S4]
gi|421739387|ref|ZP_16177699.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SM8]
gi|406692211|gb|EKC95920.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SM8]
Length = 457
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 33/218 (15%)
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
D+++ L A S LSP+LHFG +SA AR+ P A F+ +L R
Sbjct: 220 DQHDDLAGDATSRLSPHLHFGTLSAAELVHRARRKEGAGPAA---FVRQLCWRD------ 270
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
F+ + A ++ +DH R+ E + + +T P+ +A+ ++ + G
Sbjct: 271 -FHHQVLAARPDASHADYRAREDHWRTGRDAEQETEAWREGRTGYPIVDAAMRQLAHEGW 329
Query: 379 MHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
MH R+ A + ++W TG + L++ +DG N + W V
Sbjct: 330 MHNRGRLLAASFLSKTLYVDWRTGADHFLSLL--------VDGDIANNQMNWQW----VA 377
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G RP R +N ++D DG AYV+R V
Sbjct: 378 GTGTDTRP----HRVLNPVRQAHRYDPDG--AYVRRWV 409
>gi|335035151|ref|ZP_08528494.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
gi|333793582|gb|EGL64936.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
Length = 479
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 113/462 (24%), Positives = 177/462 (38%), Gaps = 61/462 (13%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGL 86
K PV+ W +D R+ DN AL+ AV+ +PV + GA Q ++ L
Sbjct: 4 KTAPVIVWFRKDLRLSDNLALLAAVEHGGPV-IPVYIREKSAGPLGGA---QEWWLHHSL 59
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV----TDFSPLREIRRCKDKIC 142
L ++E+ L L G+AE + + + E GA +V D + + + K K+
Sbjct: 60 AALSSSLEKAGGRLV-LASGDAERILRDLISETGADTVVWNRRYDPTGMATDKAFKQKLR 118
Query: 143 NRVSDSVTIHEVDA---HNVVPVWVASEKLEYSAKTLRGKI-NKLLPEYLIDYPMLEQPI 198
+ D +T+ H + S R + P D P +
Sbjct: 119 D---DGLTVQSFSGQLLHEPSRLQTKSGGPYRVYTPFRRALEGGEEPHAPADAPKSLKAP 175
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
E W + + DW ++ + +I W GE+ A + L D F+ LK Y
Sbjct: 176 EVWPKSEKLADW-KLLPTKPDWAKDFSDI-WT-PGENGAKDKL----DDFIDGALKGYEE 228
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELAD 316
R+ P KP A S LS +L G+IS A K +R + I F +E IV RE
Sbjct: 229 GRDFPAKP-ATSLLSSHLAAGEISPA-AVWHATKGLSRHIASNDISRFRKE-IVWREFCY 285
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDH--ASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
+ F+ P D K+ D A R+ + + + + T P+ +A ++
Sbjct: 286 HLLFHFPELD---------EKNWNDSFDAFPWRDDETSFKAWTRGMTGYPIVDAGMRQLW 336
Query: 375 YNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
+G MH +RM A +++W G + + D +D + W
Sbjct: 337 QHGIMHNRVRMIVASFLIKHLLIDWRKGEK-------WFRDTL-VDADPASNAANWQW-- 386
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
V G P F R N KFD DG YV+R V
Sbjct: 387 --VAGSGADASPFF---RIFNPILQGEKFDGDG--DYVRRFV 421
>gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
Length = 473
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 139/360 (38%), Gaps = 51/360 (14%)
Query: 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRE 118
+PV + + A +LG G+ + R + E L L G+A + + V E
Sbjct: 32 IPVMIRDDQMHGLGAAPKWRLGL---GIEAMGRALAEKGSRLI-LRSGQAAEVLSALVEE 87
Query: 119 CGASLL--VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GA + + P I R + V+ V H + W +T
Sbjct: 88 TGAGAVYWTRAYDP-ESIARDRGVKETLVAAGVEAQSHAGHLLFEPW--------EVETG 138
Query: 177 RGKINKLLPEYL-------IDYPMLEQPIE-----KWTGTRQSIDWDSIIAAVLRKGAEV 224
+G K+ Y + P L P E W + DW + A +++GA V
Sbjct: 139 QGSYYKVYTPYWNAVKSRDVAAP-LTAPAEITAPAHWPESEDLDDW--ALGAAMQRGAAV 195
Query: 225 PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ 284
C + +G F+ + + Y R+ P + SGLS L G+IS +
Sbjct: 196 -----CLPHQHVGEATAQGRLGAFMAQGIAEYRARRDLPGEA-GTSGLSENLSLGEISIR 249
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW--EWARKSLKDH 342
+C A +AR+ +T+ +EL V RE A + ++ P S G W EW ++
Sbjct: 250 QCWHAAMRARQEGAAGAETWAKEL-VWREFAYHLIYHTPRLAS--GNWREEWDGFPWRE- 305
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTG 397
A D E + +++ +T +A+ EM GKMH RM Y K +L W G
Sbjct: 306 AGDSPEVM----AWKQGRTGVEFVDAAMREMYVTGKMHNRARMVVASYLTKHLLTHWRVG 361
>gi|423551107|ref|ZP_17527434.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
gi|401188440|gb|EJQ95508.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
Length = 476
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 106/457 (23%), Positives = 179/457 (39%), Gaps = 71/457 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A +PV V F +G+ ++ ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--LPVYVHDETFS--IGSASK--WWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTILWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
P Y L K+ + + E + ++K +T P +A E+ G M
Sbjct: 288 YPFTVYKPL-------NKNFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTGFM 338
Query: 380 HGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
H RM + K +L W G A + D +D N +G W V
Sbjct: 339 HNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAG 386
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD DG Y+++ V
Sbjct: 387 SGADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
Length = 487
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 108/263 (41%), Gaps = 49/263 (18%)
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E+AA+E+L + FL K+++ Y R+ P +P A S LSPYL FGQ+SA++ A A
Sbjct: 215 EEAALELL----ERFLDKKIRGYGEARDRPDRP-ATSRLSPYLRFGQLSARQVWHAAMAA 269
Query: 294 RKLCPEAIDTFLEELIVR---RELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASD 345
+ A+ +E+ + RE + ++ P NY A W
Sbjct: 270 AREGGAAVAADIEKFVSELGWREFDTSLLYHFPELPTRNYRERFDAMPW----------- 318
Query: 346 KREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEE 400
R+ + + +T PL +A E+ G MH +RM A +++W G
Sbjct: 319 -RDDEAGFTAWCRGRTGYPLVDAGMRELWTTGWMHNRVRMVVASFLIKHLLIDWRAGER- 376
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
+ D +D N W + CG P F R N RKFD
Sbjct: 377 ------WFWDTL-VDADIANNSANWQWVAGCGADAA-----PYF---RIFNPVTQGRKFD 421
Query: 460 VDGYIAYVKRIVGGTKKRRADSL 482
+G YV+R V + AD++
Sbjct: 422 PEG--DYVRRWVPELARLPADAI 442
>gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans
CJ2]
gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas
naphthalenivorans CJ2]
Length = 477
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 108/466 (23%), Positives = 177/466 (37%), Gaps = 91/466 (19%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W RD R++DN AL HA+ + + D A R++ F+ L L R +
Sbjct: 2 WFRRDLRLQDNAALHHALKSCEQVFCAFVFDRAILDSLPKAD-RRVEFIRESLVDLNRQL 60
Query: 94 EE-TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS---- 148
+ + G A D +P + + D+ C+ D+
Sbjct: 61 AKLALPAGLLIRHGTALDALPALASRLSVDAVFANHD---------DEPCSLARDAEVQG 111
Query: 149 ------VTIHEVDAHNVVP----VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI 198
V H H + + +A + + + K+ YL YP +
Sbjct: 112 LLECAGVAFHTFKDHVIFERQEVLTLAGQPYTVFTPYKKAWLKKVDAFYLQPYP-----V 166
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVP---EIGWCESGEDAAMEVLKGSK------DGFL 249
EK+ ++ A + +VP E+G+ E +A+ + GS+ D FL
Sbjct: 167 EKYAS--------ALAARPADERQDVPALAELGF-EKTNLSALRLPTGSQGAEALFDDFL 217
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
R+ +Y R+ P + S L +L FG IS ++ L A ++ E T+L ELI
Sbjct: 218 -DRMPHYADTRDFP-AVKGPSYLGVHLRFGTISIRKITLNALAQQQTGSEGAATWLSELI 275
Query: 310 VR---RELADNF-----CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
R ++ NF ++P YD++ AWE +K E ++ + + + +T
Sbjct: 276 WRDFYAQILANFPHAASSAFKPGYDAI--AWE---------QGEKAELLF--QAWCEGRT 322
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDG 416
PL +A+ ++ G MH +RM A + ++W G A LND D
Sbjct: 323 GYPLVDAAMAQLNQTGYMHNRLRMVTASFLVKDLGIDWRWGERY---FAEKLND---FDL 376
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
NG G W+ G +P F R N KFD DG
Sbjct: 377 ASNNG--GWQWAAS----TGCDAQPYF---RIFNPVSQSEKFDADG 413
>gi|350563289|ref|ZP_08932111.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium aerophilum
AL3]
gi|349779153|gb|EGZ33500.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium aerophilum
AL3]
Length = 478
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS------AQ 284
+ GE AA + + FLT + +YP R+ P S LS +LHFG+IS A
Sbjct: 201 QMGEQAAWQ----QANNFLTDSIHHYPKQRDFP-SIMGTSQLSIHLHFGEISSVAILEAC 255
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHAS 344
R A+ +R A EAI F+ +LI RE A F+ P+ + A++ L A
Sbjct: 256 RNAITSRPADS---EAIHAFIRQLI-WREFARYLLFFNPDLQT--QAYQAKFNQLSWPAP 309
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY---WAKKIL--EWTTGPE 399
D++ ++ T P+ +A ++ G MH +RM W K L W G +
Sbjct: 310 DEQ-----VTAWQTGHTGVPIIDAGMRQLWQTGWMHNRVRMLVASWLTKNLNQHWLVGQQ 364
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKF 458
+ +D N +G W + CGV P F R N KF
Sbjct: 365 --------WFEHTLLDADIANNVMGWQWVAGCGV-----DAAPYF---RLFNPVVQSEKF 408
Query: 459 DVDGYIAYVKR 469
D G+ Y+++
Sbjct: 409 DPQGH--YIRK 417
>gi|392568851|gb|EIW62025.1| hypothetical protein TRAVEDRAFT_44861 [Trametes versicolor
FP-101664 SS1]
Length = 572
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 124/322 (38%), Gaps = 75/322 (23%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGL 86
VVYWM D R+RDN AL HA QA K+ VP+ F L Q A AR++ F LR L
Sbjct: 54 VVYWMRMEDMRIRDNRALAHASAQAQKDGVPLLALFVLSPQDYAAHDRGARRIDFTLRIL 113
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREIRRCKDKI 141
++ + + I + IP+F+ + AS L + + E+RR
Sbjct: 114 ENIKSELAK-LDIPLYTTSHSPRTKIPSFIHDLLLQWNASHLFGNIEYEVDELRR----- 167
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK---LLPEYLIDY-PMLEQ- 196
D H V +K +R K + + +L + P+LE+
Sbjct: 168 -----DLALCQIAKKHGKVACLFGHDKCIMPPGDVRTKDGRGYTVYSPFLRSWAPLLEKA 222
Query: 197 --------PIEKWTGTRQSIDWDSIIAAVLRKGAEVP-EIGWCESG-------------- 233
P+ K S+ + AA+ + EVP E+ G
Sbjct: 223 SSHHLDELPLPK--ANNPSVRQHPVFAALFK--IEVPREVTGFSLGPEERERISTFWHAE 278
Query: 234 EDAAMEVLK--------------------GSKDGFLTK--RLKNYPTDRNNPLKPRALSG 271
E AA E+L+ G++D TK RL Y D + + S
Sbjct: 279 EQAAHEMLRRFLSTAARPTQFGAVDPLTHGAQDVDPTKKSRLAKY-GDARDRMDADTTSR 337
Query: 272 LSPYLHFGQISAQRCALEARKA 293
LSPYL G ISA+ C EA KA
Sbjct: 338 LSPYLSAGVISARACVREALKA 359
>gi|343509312|ref|ZP_08746596.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
gi|342805079|gb|EGU40359.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
Length = 483
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 35/227 (15%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC---ALEARKARK----LCPEA 300
F +R+ NY DR+ P A S LSPYL G +S ++C L + +A + L E
Sbjct: 223 FCHERVDNYHNDRDKPAL-NATSMLSPYLAIGALSVRQCVARVLYSAQAHQITSPLLGEG 281
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
I T++ EL V R+ + ++P + W K H ++H+ ++K
Sbjct: 282 IHTWISEL-VWRDFYQHLLHFEPKLCKGRHFVTWTEKL---HWPGSKQHLAA---WQKGM 334
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEID 415
T P+ +A+ ++ G MH +RM A + L W G Y K +D
Sbjct: 335 TGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDLHLHWHHGER-------YFMQKL-VD 386
Query: 416 GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G G WS G +P F R N + +FD DG
Sbjct: 387 GDYAANNGGWQWSAST----GCDAQPYF---RIFNPTAQGERFDPDG 426
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 96/240 (40%), Gaps = 45/240 (18%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA----I 301
+ FL K+++ Y R+ P +P A S LSPYL FGQ+SA++ A+ A + A I
Sbjct: 225 EAFLDKQIRGYGDARDRPDRP-ATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADI 283
Query: 302 DTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
+ FL EL RE + ++ P NY A W R +
Sbjct: 284 EKFLSELGW-REFNTSLLYHFPELPMRNYRDRFDAMPW------------RSDEAAFAAW 330
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDK 411
+ +T PL +A E+ G MH +RM A +++W G + D
Sbjct: 331 CRGRTGYPLVDAGMRELWATGWMHNRVRMVTASFLIKHLLIDWRAGER-------WFWDT 383
Query: 412 YEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+D N W V G P F R N RKFD DG AYV+R V
Sbjct: 384 L-VDADIANNSANWQW----VAGSGADAAPYF---RIFNPVMQGRKFDPDG--AYVRRWV 433
>gi|424793391|ref|ZP_18219508.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796635|gb|EKU25108.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 473
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 106/457 (23%), Positives = 174/457 (38%), Gaps = 65/457 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W RD R+ D+ +HA A VPV V + A A L ++ R L L
Sbjct: 4 AIVWFRRDLRLHDH-PALHAALAAGHTPVPVYVHSPGDEGAWAAGAASLSWLQRALAALD 62
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
++ L L QG AE + + ECGA + + + P + R + K R +
Sbjct: 63 AQLQARGSRLI-LRQGPAETVLRELIAECGAVAVYWNRRYEPATQPRDARLKRELR-AQG 120
Query: 149 VTIHEVDAHNVVPVW-VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
+ +H + + W +A+++ G P + + P+ +
Sbjct: 121 LEVHSYNGALLFEPWQLATQQ--------GGPYKVFTPFWRSALSHWQVPVLRPAPKTLP 172
Query: 208 IDWDSIIAAVLRKGAEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
++ + L++ P +GW + GE A E L+ DG L+ Y R
Sbjct: 173 PPPPALPSLPLQQLGLAPALGWDRGFWDVWQPGEAGAHEALEVFVDG----ALRGYVAGR 228
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRELADNFC 319
+ P + S LSP+LHFG+I+ R AR AID ++ +L R+ A +
Sbjct: 229 DRPDQ-IGTSRLSPHLHFGEIAPWRIVAALENARSAATGAAIDGYIRQLGW-RDFAHHLL 286
Query: 320 FYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
+ P N + + WA + +++ +T P+ +A E+
Sbjct: 287 HHFPATPEHNLNPRFARFRWATPDPAQ-----------LQAWQRGRTGVPIVDAGLRELW 335
Query: 375 YNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
+ G MH +RM A + + W+ G A + D +D N +G W
Sbjct: 336 HTGWMHNRVRMIVASYLCKHLRVHWSEG-------ARWFWDTL-VDADLANNTLGWQW-- 385
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIA 465
V G P F R N +KFD G YIA
Sbjct: 386 --VAGTGADAAPYF---RVFNPVTQAQKFDPQGRYIA 417
>gi|310816072|ref|YP_003964036.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25]
gi|385233576|ref|YP_005794918.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Ketogulonicigenium vulgare WSH-001]
gi|308754807|gb|ADO42736.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25]
gi|343462487|gb|AEM40922.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Ketogulonicigenium vulgare WSH-001]
Length = 478
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 147/368 (39%), Gaps = 34/368 (9%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
P ++W+ RD R DN AL A + P+ F + D + A + + LR
Sbjct: 3 APGLFWLSRDFRFADNPALAAAC-----TDGPLLAVFCVDDLLMSQGAASRWRLEQALRA 57
Query: 89 LQRNIEE-TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
+ + T + +GE + +P V+ GA + P +R +D++ ++
Sbjct: 58 FDAALRKRTGGRGVLVLRGEPDRILPALVQNTGAQRIHQSDWPTAGMRAVQDRLRAALAP 117
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKT---LRGKINKLLPEYLIDYPMLEQP--IEKWT 202
E+ +++ L A T + + L ++ D P + P I
Sbjct: 118 LGAGLELHGGHLL---AHPAMLRSGAGTPYRVYTPFARALRQHGADRPGRDAPARITPCA 174
Query: 203 GTRQSIDWDSI-IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
Q + +++ +A + +G + +G A L D FL + YP R+
Sbjct: 175 DDHQGLAIETLDLAPDMHRGRALLAKFALPAGAQQAEARL----DTFLDQ-AAVYPAGRD 229
Query: 262 NPLKPRALSGLSPYLHFGQISAQR----CALEARKARKLCPEAIDTFLEELIVRRELADN 317
+P +P A S LS +L G+IS +R +L A L P I FL E+I R E + +
Sbjct: 230 HPDQP-ATSNLSEHLALGEISPRRIWAIASLRAAAEPALAP-GITKFLSEVIWR-EFSWH 286
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
P+ + EW+ + S ++E+A T L +A EM G
Sbjct: 287 LLIANPDLPTQPWRQEWSEFPWQQRTS-------ALSRWEQAATGISLVDAGLREMRVTG 339
Query: 378 KMHGFMRM 385
+MH +RM
Sbjct: 340 RMHNRVRM 347
>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase [Bacillus cereus G9842]
gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
G9842]
Length = 476
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 107/460 (23%), Positives = 183/460 (39%), Gaps = 72/460 (15%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL AV +PV V F +G+ A+ ++ + +++ +
Sbjct: 8 MFQKDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAVIDVKKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIH 152
E L + +G E+ I + + + + + + + + K+ + D +
Sbjct: 62 EALGSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICK 120
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
E ++H ++ W+ +K K N + ++ +PI K QSI W S
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGS 170
Query: 213 IIAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 171 SLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP 226
Query: 264 LKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNF 318
A S L+PYL FGQIS + L + + C + +++F+ +LI RE +
Sbjct: 227 -NQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYL 284
Query: 319 CFYQPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
++ P Y L K+ + +K E + ++K +T P +A E+
Sbjct: 285 LYHYPFTVYKPL-------NKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQT 335
Query: 377 GKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
G MH RM + K +L W G A + D +D N +G W
Sbjct: 336 GFMHNRTRMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW---- 383
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
V G P F R N KFD +G Y+++ V
Sbjct: 384 VAGSGADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 116/475 (24%), Positives = 183/475 (38%), Gaps = 67/475 (14%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM 82
SLD P + W D R++D AL+ AV + + +PV + D A ++
Sbjct: 27 SLDTMTHPSLVWFRHDLRLQDQPALVAAVARG-EPVIPVYIWSPDEDGDWPPGAASRWWL 85
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
L L +EE L + QG A + + + + GA + RR +
Sbjct: 86 HHSLHQLNEQLEELGSRLI-IRQGNALTELLSLIDDTGADAVYW-------TRRYEPAAI 137
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKL--EYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
R DS E+ NV+ + L + +T +G+ ++ + P E
Sbjct: 138 QR--DSRVKTELRQRNVLAQSFNGQLLFEPWQIETKQGRPYQVFTAFWKTCLTQRTPDEP 195
Query: 201 WTGTRQSID---WDSIIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLT 250
+ W +A L + P I W GE AA + L FL
Sbjct: 196 EPAPSDFLSPRPWPK--SAKLNDLSLRPTIAWDTGFAERWVPGEKAARQELHR----FLE 249
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA-RKARKLC--PEAIDTFLEE 307
+ +Y T R+ P S LSP+LHFG+IS + E R+ R+ P + +TFL+E
Sbjct: 250 SPVFDYVTMRDLPAL-HGTSRLSPHLHFGEISPRTIWHETQRRLRQHSQDPTSAETFLKE 308
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWAR-KSLKDHASDKREHIYTKEQFEKAQTADPLW 366
+ RE A + F+ PN E+A + D+ K ++ QT P+
Sbjct: 309 -VGWREFAHHLLFHFPNTPREPLRSEFANFPWINDNPRLK--------AWQTGQTGYPIV 359
Query: 367 NASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A E+ G MH +RM A ++ W G E + D +D +
Sbjct: 360 DAGMRELWTTGWMHNRVRMIVASFLVKDLLIPWQKGAE-------WFWDTL-VDADLASN 411
Query: 422 YVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
+G W+ CG P F R N +KFD +G+ Y++R V K
Sbjct: 412 TLGWQWTAGCGA-----DAAPFF---RIFNPVLQSQKFDAEGH--YIRRWVPELK 456
>gi|78486463|ref|YP_392388.1| deoxyribodipyrimidine photolyase [Thiomicrospira crunogena XCL-2]
gi|78364749|gb|ABB42714.1| Deoxyribodipyrimidine photo-lyase type I [Thiomicrospira crunogena
XCL-2]
Length = 479
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 39/262 (14%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR---KLCPEAID 302
+ F+T+ L NY DR+ P S LSP+LHFG++ ++ E + +AI
Sbjct: 215 ETFITEGLANYEQDRDFP-AIDGTSQLSPHLHFGELHSRAIVFELLSLETEPTIANQAIR 273
Query: 303 TFLEELIVRRELADNFCFYQPNYDS--LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+L +L RE A ++ P+ ++ + +E + L A D E + + + +
Sbjct: 274 VWLRQL-AWREFARAILWHFPHTETHPFQAKFETFYRPL---AEDDSESSKNYQAWCEGR 329
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEID 415
T P+ +A ++ G MH +RM A + ++W G A + ND +D
Sbjct: 330 TGVPIIDAGMKQLWETGWMHNRVRMLVASWLTKNADIDWRAG-------AQWFNDTL-VD 381
Query: 416 GRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG-- 472
N +G W + CGV P + R N KFD +G Y+++ +
Sbjct: 382 ADPANNTLGWQWVAGCGV-----DAAPYY---RLFNPVRQSEKFDANG--QYLRQWLPEL 431
Query: 473 ---GTKKRRADSLVSGKEKELC 491
K A L++ EK C
Sbjct: 432 KTYSNKHIHAPWLIAPNEKHFC 453
>gi|423605178|ref|ZP_17581071.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
gi|401244326|gb|EJR50690.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
Length = 476
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 105/459 (22%), Positives = 176/459 (38%), Gaps = 75/459 (16%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEK--LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
+H ++ W+ +K EY T P Y + +Q I K QSI W S
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFT---------PFY---HAFQKQVISKPISKVQSIKWGSS 171
Query: 214 IAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 172 LPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP- 226
Query: 265 KPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFC 319
A S L+PYL FGQIS + L + K C + +++F+ + I RE +
Sbjct: 227 NQNAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLL 285
Query: 320 FYQPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
++ P Y L K+ + + E + ++K +T P +A E+ G
Sbjct: 286 YHYPFTVYKPL-------NKNFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTG 336
Query: 378 KMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MH RM + K +L W G A + D +D N +G W V
Sbjct: 337 FMHNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----V 384
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD DG Y+++ V
Sbjct: 385 AGSGADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|452949001|gb|EME54472.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis decaplanina DSM
44594]
Length = 449
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 111/460 (24%), Positives = 178/460 (38%), Gaps = 88/460 (19%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-AKARQLGFMLRG 85
+ PVV W RD R+ D+ AL+ +A+K++ V + L D L + A ++ F+
Sbjct: 3 REAPVVLWFRRDLRLGDHAALL----EASKHSKHVLALYVLDDALLKPSGAPRVAFLHGC 58
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV 145
L+ L ++ L +G+ + + RE GA+ + RR D++ +
Sbjct: 59 LKAL----DDQLGGRLMLVKGDPVEEVVKAAREIGAATVHVSSDTGPYGRRRDDEVKKAL 114
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---YLIDYPMLEQ------ 196
++ H++ WV + S G+I K P+ Y + P
Sbjct: 115 AE---------HDIA--WVETGS---SYAITPGRITK--PDGDPYRVFTPFYRAWVRHGW 158
Query: 197 PIEKWTGTRQSIDWDSIIAAV-LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
P TG + +DW +V L K + + E GE AA+E FL L+
Sbjct: 159 PRPADTG-KSIVDWVEPPRSVKLPKSPSLKGMELPEPGEKAALERWHE----FLDDGLET 213
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQIS-----AQRCALEARKARKLCPEAIDTFLEELIV 310
Y DR+ P +P + LSPYL +G + A E A+ L E
Sbjct: 214 YDEDRDRPDRP-GTTRLSPYLRWGCVHPRTLLADLTGNEGSGAKSLRGE---------FA 263
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK---AQTADPLWN 367
RE + +++P E ARK+ D D EH E F++ +T P+ +
Sbjct: 264 WREFHADVLWHRP---------ETARKNY-DSRFDAMEHESDDEAFQRWCEGRTGFPIVD 313
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
A +++ G MH +RM A + L W G + K+ +DG +
Sbjct: 314 AGMRQLLAEGWMHNRVRMIVASFLVKDLHLPWWLGARHFM--------KHLVDGDLASNQ 365
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ W V G P F R N + KFD G
Sbjct: 366 LNWQW----VAGSGTDAAPYF---RIFNPTTQGEKFDPAG 398
>gi|408388110|gb|EKJ67801.1| hypothetical protein FPSE_12017 [Fusarium pseudograminearum CS3096]
Length = 593
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 105/439 (23%), Positives = 179/439 (40%), Gaps = 80/439 (18%)
Query: 6 PPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
P V + ++ S+D K VV+W D R+ DN AL A D+A + VP+ +
Sbjct: 77 PIEVLVDALEVTAKERKSIDVKDA-VVHWFKMDLRISDNRALALASDKAKEAGVPLIALY 135
Query: 66 NLFDQFLGAKAR---QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPN----FVRE 118
+ Q A R ++ FMLR L +++ ++ + I ++ E ++P+ + E
Sbjct: 136 IISPQDYEAHVRAPVRIDFMLRTLSVIKEDLAK-LDIPLYVETVEKRKHLPDRILELMDE 194
Query: 119 CGASLLVTDFS-PLREIRRCKDKICNRVSDSVTIHEVDAHNVVP-----VWVASEKLEYS 172
GAS L + + E+RR I + + V +VP + Y+
Sbjct: 195 WGASHLYANMEYEVDELRREAAMIKDFAENGKAFEVVHDTCIVPPGELHTGAGKQYAVYT 254
Query: 173 A--KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRK--GAEVPEIG 228
KT I++ L D L +P EK + + +K E+PE
Sbjct: 255 PWLKTWIAHIHENL-----DLLELYEPPEKNPDSARK---------KFKKLFNVEIPEAP 300
Query: 229 WCESGEDAAMEVLK-----GSKDG------FLTKRLKNYPTDRNNPLKPRALSGLSPYLH 277
+ D E L+ G + F +R+ NY RN P A S LS +L
Sbjct: 301 KSKRLGDGEKERLRSLWPCGEHEAKKRLGKFCEERIGNYHEKRNIPADA-ATSSLSVHLA 359
Query: 278 FGQISAQRCALEAR---KARKL--CPEAIDTFLEELIVR---RELADNFCF------YQP 323
G ISA+ C AR K +KL + I T++ E+ R + + N+ + ++P
Sbjct: 360 SGTISARTCVRTARDRNKTKKLNGGNDGIQTWISEVAWRDFYKHVLVNWPYVCMNKPFKP 419
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
Y ++ +++ DH + + + +T P+ +A+ +M G MH
Sbjct: 420 EYSNISWSYD------NDHFA----------AWCEGRTGFPIVDAAMRQMNTIGYMHNRC 463
Query: 384 RM----YWAKK-ILEWTTG 397
RM + AK +L+W G
Sbjct: 464 RMIVASFLAKDLLLDWRKG 482
>gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
Length = 468
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 145/362 (40%), Gaps = 31/362 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+YW+ RD R+ DN AL+ A ++ VP+ + + + A +LG G+
Sbjct: 3 TIYWVRRDFRLSDNPALVAACERGAV--VPLFICDEVIEGHGAAPKWRLGL---GVEAFA 57
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
+ L L +G+A + + + A+ + + + P R K + D
Sbjct: 58 EALHAVGSKLI-LRRGDALPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAALK-EDG 115
Query: 149 VTIHEVDAHNVVPVWVASEKLE--YSAKTLRGK-INKLLPEYLIDYPMLEQPIEKWTGTR 205
V H + W K Y T K + P + P + P + W +
Sbjct: 116 VEAISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAP-DTWPASD 174
Query: 206 QSIDWDSIIAAVLRKGAEV--PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
DW + + +GAEV P + GE AA +G F+ + +Y R+N
Sbjct: 175 DLSDWH--LGKAMNRGAEVVAPHL---NVGEQAA----QGRLGAFIGNGIDDYADARDN- 224
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
L S LS L +G+ISA++C ++A +TFL+E +V R+ A + + P
Sbjct: 225 LAKNGTSLLSENLAYGEISARQCWHAGQRAMADGKPGAETFLKE-VVWRDFAYHLVHHTP 283
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
+ EW ++ + + +++ +T + +A+ EM G+MH
Sbjct: 284 RITTANWREEW--EAFPWNTDPDTPEV---TAWKQGRTGMAVVDAAMREMYVTGRMHNRA 338
Query: 384 RM 385
RM
Sbjct: 339 RM 340
>gi|423562452|ref|ZP_17538728.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
gi|401200617|gb|EJR07502.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
Length = 476
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 107/460 (23%), Positives = 183/460 (39%), Gaps = 72/460 (15%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL AV +PV V F +G+ A+ ++ + +++ +
Sbjct: 8 MFQKDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAVIDVKKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIH 152
E L + +G E+ I + + + + + + + + K+ + D +
Sbjct: 62 EALGSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICK 120
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
E ++H ++ W+ +K K N + ++ +PI K QSI W S
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGS 170
Query: 213 IIAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 171 SLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP 226
Query: 264 LKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNF 318
A S L+PYL FGQIS + L + + C + +++F+ +LI RE +
Sbjct: 227 -NQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYL 284
Query: 319 CFYQPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
++ P Y L K+ + +K E + ++K +T P +A E+
Sbjct: 285 LYHYPFTVYKPL-------NKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWKT 335
Query: 377 GKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICG 431
G MH RM + K +L W G A + D +D N +G W
Sbjct: 336 GFMHNRTRMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW---- 383
Query: 432 VHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
V G P F R N KFD +G Y+++ V
Sbjct: 384 VAGSGADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 478
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 103/457 (22%), Positives = 181/457 (39%), Gaps = 71/457 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ + +Q+ ++
Sbjct: 13 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAIIDVQKQLK-A 65
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
F + G+ ++ I + + + + + + + + K+ + D + E +
Sbjct: 66 LGSTFIIRNGKTQEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 125
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 126 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGSSLP 175
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 176 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-NQ 230
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++
Sbjct: 231 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYH 289
Query: 322 QPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
P Y L K+ + +K E + ++K +T P +A E+ G M
Sbjct: 290 YPFTVYKPL-------NKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFM 340
Query: 380 HGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
H RM + K +L W G A + D +D N +G W V
Sbjct: 341 HNRTRMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAG 388
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y+++ V
Sbjct: 389 SGADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 420
>gi|429099734|ref|ZP_19161840.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
gi|426286074|emb|CCJ87953.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
Length = 473
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 183/469 (39%), Gaps = 80/469 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W D RV DN AL A + + + +A + RQ F+ + L LQ+
Sbjct: 5 LVWFRADLRVFDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIWQNLEALQQ 64
Query: 92 NIEETFQILFFLFQGEAED------NIPNFVRECGASLLVTDFS-PLREIRRCKDKICNR 144
+ + LF EA D + F E S L ++ L E RR + R
Sbjct: 65 ALAKRG---IPLFTREAHDFAAAVETLATFCDEHQVSALFYNYQYELNEARR-DAAVERR 120
Query: 145 VSDSVTIHEVDAHNVVP---VWVASEKL-----EYSAKTLRGKINKLLPEYLIDYPMLEQ 196
+++ V D ++P V S ++ YS LR ++ + LP P +
Sbjct: 121 LAERVACQGFDDSVMLPPGSVVTGSGEMYKVFTPYSRAFLR-RLGEGLP------PCVNA 173
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
P + G D A E P+ +GE+AA++ L+ F +Y
Sbjct: 174 PKPRPGGAIS----DVPALAPFDYPCETPDALLFPAGEEAALQRLRE----FCQTAAGDY 225
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTFLEELIVR--- 311
P R+ P R S LSPYL G +S ++C L A R L ++ +L ELI R
Sbjct: 226 PEKRDFPAI-RGTSLLSPYLAIGVLSPRQCLHRLLAEHPRALEGDSGAVWLNELIWREFY 284
Query: 312 RELA---DNFCFYQPNYD-SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
R L C +QP D + + AW+ + + ++ E + + +T P+ +
Sbjct: 285 RHLIVAWPRLCRHQPFVDWTARVAWQ------------QNDALF--EAWCEGRTGYPIVD 330
Query: 368 ASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
A+ +M G MH +RM A +++W G Y + IDG
Sbjct: 331 AAMRQMNTTGWMHNRLRMITASFLVKDLLVDWRRGER-------YFMSQL-IDGDFAANN 382
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G W+ D P F R N + ++FD DG +++R V
Sbjct: 383 GGWQWAASTGTDAA----PYF---RIFNPTTQGQRFDADG--DFIRRWV 422
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 140/383 (36%), Gaps = 69/383 (18%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFML 83
P V W D R+ DN AL A ++ P+ + L D+ +G+ +R ++
Sbjct: 3 APAVVWFRNDLRLADNPALTAAA----RSGAPIIALYVLDDESAGEWRMGSASRW--WLH 56
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF----------SPLRE 133
L L ++ + L +G AE + N V + GA + + S ++
Sbjct: 57 HSLTALAHDLAR-LGVTLTLRRGRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKS 115
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHN--------VVPVWVASEKLEYSAKTLRGKINKLLP 185
R + + + S+ N P W A E L P
Sbjct: 116 QLRARGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLAAEAPDAPLPA------P 169
Query: 186 EYLIDYPM-LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
+ L P + W DW + R +GE AA+E L
Sbjct: 170 KKLTAAPPPASDALADWRLLPTKPDWAGGLRETWR------------AGEHAALERLAE- 216
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F KR+++Y DR+ + +S +SP+LHFG++S +R E +A +A +
Sbjct: 217 ---FAKKRVRDYKIDRDF-MAREGVSRMSPHLHFGEVSPRRIWAEITEA---AGDAGAAY 269
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD--KREHIYTKEQFEKAQTA 362
L E I RE + P ++L + D RE E + + QT
Sbjct: 270 LRE-IGWREFCHHLLVANPQMPE---------RALDERFRDFPWREDAAALEAWRRGQTG 319
Query: 363 DPLWNASQMEMVYNGKMHGFMRM 385
PL +A+ E+ G MH RM
Sbjct: 320 YPLVDAAMRELWITGNMHNRARM 342
>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
Length = 481
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 34/174 (19%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE AA L FL ++ Y DR+ P A S LSP+L FG+IS ++ AR
Sbjct: 206 AGERAAQARLAK----FLETTVRGYAADRDRP-DIEATSRLSPHLRFGEISPRQIWHAAR 260
Query: 292 KARKLCP---EAIDTFLEELIVRRELADNFCF---------YQPNYDSLKGAWEWARKSL 339
A + P ID FL EL R E + + F QP++D A+ W++ +
Sbjct: 261 FAAEQQPAFARGIDKFLSELGWR-EFSRHLLFNNPDLATRNLQPSFD----AFPWSQDAA 315
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
A +++ QT P+ +A E+ + G MH +RM A +++
Sbjct: 316 ALRA------------WQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVK 357
>gi|426198450|gb|EKV48376.1| CPD photolyase [Agaricus bisporus var. bisporus H97]
Length = 562
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 17 RVLKQGSLDKKRGPVV-YWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF--DQFL 72
++++ G D +G VV YWM F D R+ DN AL A +QA K+ +P+AV F L D F
Sbjct: 18 QLIEHGMPDPDKGKVVFYWMRFADLRITDNRALHKASEQAQKDGIPLAVLFVLSPEDYFA 77
Query: 73 GAK-ARQLGFMLRGLRLLQRNIEETFQILFFL 103
+ +R++ F+LR L+LLQ + L+ +
Sbjct: 78 HDRSSRRIDFVLRNLKLLQEAFSKLHIPLYVI 109
>gi|170780895|ref|YP_001709227.1| deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
michiganensis subsp. sepedonicus]
Length = 508
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 156/388 (40%), Gaps = 62/388 (15%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
D+ GP + W+ D RV DN A+ AV++ P+ V + L ++ G R LG R
Sbjct: 18 DQAHGPTIVWLRDDLRVADNPAMHAAVERGE----PIVVLYVLDEESAG--IRPLGGAAR 71
Query: 85 -GLRLLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDK 140
L + + E+ + L L +G+A D + + VRE GA ++ +
Sbjct: 72 WWLHMSLSRLGESLRGLGSPLVLRRGKAADVVDDLVREVGAGAVLWNRRYGGAEIAVDTA 131
Query: 141 ICNRVSD-SVTIHEVDAHNVVPVWVASEKL--EYSAKTLRGKINKLLPEYLIDYP---ML 194
I + D + + +V W K + T K + E +P L
Sbjct: 132 IKKDLGDRGLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEPRKPFPAPDAL 191
Query: 195 EQP--------IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
E P ++ W DW AA LR+ C+ GE A ++ L+
Sbjct: 192 EAPRKAPRSDDLDDWGLLPTKPDW----AAGLREA--------CDPGEAAGLQRLE---- 235
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR--KLCPEAIDT- 303
F+ L++Y R+ P S LS YL +G++S + ++ R K+ + ++
Sbjct: 236 DFVHHELEDYAAQRDEPAA-MTTSRLSAYLRWGEVSPFQVWHRVQRTRGKKVGGDEVNAT 294
Query: 304 -FLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
FL EL RE + + ++QP N+ A+ W D D T ++
Sbjct: 295 KFLSELGW-REFSYHLLYHQPDLATRNFVPRFDAFPW------DEPRDD-----TLGAWQ 342
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ +T PL +A + +G +H +RM
Sbjct: 343 RGETGVPLVDAGMRALWKDGHLHNRVRM 370
>gi|343515133|ref|ZP_08752192.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
gi|342798665|gb|EGU34263.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
Length = 483
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 35/227 (15%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC---ALEARKARK----LCPEA 300
F +R+ NY DR+ P A S LSPYL G +S ++C L + +A + L E
Sbjct: 223 FCHERVDNYHNDRDKP-ALNATSMLSPYLAIGALSVRQCVARVLYSAQAHQITSPLLGEG 281
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
I T++ EL V R+ + ++P + W K H ++H+ ++K
Sbjct: 282 IHTWISEL-VWRDFYQHLLHFEPKLCKGRHFVTWTEKM---HWPGSKQHLAA---WQKGM 334
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEID 415
T P+ +A+ ++ G MH +RM A + + W G Y K +D
Sbjct: 335 TGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDLHVHWHHGER-------YFMQKL-VD 386
Query: 416 GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G G WS G +P F R N + +FD DG
Sbjct: 387 GDYAANNGGWQWSAST----GCDAQPYF---RIFNPTAQGERFDSDG 426
>gi|357384343|ref|YP_004899067.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
gi|351592980|gb|AEQ51317.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
Length = 466
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 151/374 (40%), Gaps = 58/374 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-FDQFL----GAKARQLGFMLRG 85
+ W+ D R+ DN AL A+ ++ PV + L D+ L GA L L
Sbjct: 5 TLVWLRNDLRIADNPALAAAL----RHEGPVHAVYVLETDRELRGLGGAAKVWLHESLAA 60
Query: 86 LR--LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKI 141
L L +R + +F+ +GE+ IP VRE A + + + P K
Sbjct: 61 LSGALAERGVRLSFR------EGESGKIIPEMVRETKAERVYWNRRYDPAGRTHDAAIKT 114
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
R +D + +A +V W + K +G + + + E+PI
Sbjct: 115 ALR-ADGAEVASFNASLLVEPWDIATK--------QGTPYGVFTPFWT--ALREKPIPDP 163
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIG-----WCESGEDAAMEVLKGSKDGFLTKRLKNY 256
G + + +I A L G G W GEDAA VL FL L +Y
Sbjct: 164 IGRIEKHE--AISAPALDFGKRPAWAGGILERWA-IGEDAAKRVLSD----FLDDLLADY 216
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK---ARKLCPEAIDTFLEELIVRRE 313
P DR+ P K S +SP+L FG+I ++ R ++ A + FL E + RE
Sbjct: 217 PNDRDLPRK-DGTSRMSPHLRFGEIGPRQIWFAVRHLIDSKPSMASAGEKFLSE-VAWRE 274
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDK--REHIYTKEQFEKAQTADPLWNASQM 371
+ + +++ + AR S+++ + R + ++K QT P+ +A
Sbjct: 275 FSYHLLYHRDDI---------ARHSMQERFDEIEWRSDSKALKAWQKGQTGIPIVDAGMR 325
Query: 372 EMVYNGKMHGFMRM 385
++ G MH +RM
Sbjct: 326 QLWQTGWMHNRVRM 339
>gi|376316713|emb|CCG00097.1| deoxyribodipyrimidine photo-lyase type I [uncultured Flavobacteriia
bacterium]
Length = 433
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 154/364 (42%), Gaps = 51/364 (14%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
++W RD R DN L A +A+ + D+ L R + F+ R ++ L++
Sbjct: 5 LFWHRRDLRFEDNAGLFQAQKKADVVQAVFIFDITILDKLLKNDQRII-FIHRSIQNLKK 63
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRVSDSV 149
+ F ++ G+ ++ IP +E + T D+ P R DK ++
Sbjct: 64 EYQR-FGGDLKVYHGDPKELIPKIAKELKVDSVYTNRDYEPYALER---DKFIFDKLKTL 119
Query: 150 TIHEVDAHNVVPVWVASE-----KLEYSAKT--LRGKINKLLPEYLIDYPMLEQPIEKWT 202
+I + A + V ++ SE L Y+ T R K+ YL YP E +
Sbjct: 120 SIDFIGAKDNV-IFEKSEITKADGLPYTIYTPYSRKWKEKMSEFYLSSYPNGEYSKKIAK 178
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
TR+ I L+ E+G+ + E++ D + K + Y +RN
Sbjct: 179 STRE-------ILITLK------EMGFDDK------ELVPFPSDDYPKKWMAKYGENRNY 219
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
P S L +L FG IS ++ ARKA + P TFL ELI R+ ++
Sbjct: 220 PAIEGGTSHLGVHLRFGTISIRQL---ARKAEQTDP----TFLNELIW-RDFYQAIIYHF 271
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ-FEKAQTADPLWNASQMEMVYNGKMHG 381
P+ S+KG+++ K + + + E+ + Q + + +T PL +A E+ G MH
Sbjct: 272 PH--SVKGSFK------KQYDAIEWENNEVEFQSWREGKTGYPLVDAGMRELNETGYMHN 323
Query: 382 FMRM 385
+RM
Sbjct: 324 RVRM 327
>gi|378719409|ref|YP_005284298.1| deoxyribodipyrimidine photo-lyase Phr [Gordonia polyisoprenivorans
VH2]
gi|375754112|gb|AFA74932.1| deoxyribodipyrimidine photo-lyase Phr [Gordonia polyisoprenivorans
VH2]
Length = 429
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 158/419 (37%), Gaps = 76/419 (18%)
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPL 131
A R+L F++ LR ++E + +G ++ IP V GAS + DFSP
Sbjct: 37 AGDRRLAFLVDSLR----ELDERLDGRLLVVRGRPDEEIPRLVDAVGASTVHVSEDFSPF 92
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R D+V DA +V V S L + + + Y +
Sbjct: 93 ----------GRRRDDAVVAALDDAGDVSWEPVGSPYLVSPGRVTKSDGSP----YKVFT 138
Query: 192 PMLEQPIEK-W-TGTRQSIDWDSII--AAVLRKG----AEVPEIGWCESGEDAAMEVLKG 243
P Q + W T S+ D ++ + + R G + P +GE+AA+
Sbjct: 139 PFFRQWRDHGWRTPASTSVTADDLVDPSDLTRSGRIRIPKAPTTTDIPAGENAALARWGE 198
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT 303
F+ + L Y DRN P S +S YL FG I + A + K
Sbjct: 199 ----FVAEDLAGYDDDRNRP-DLDVTSRMSAYLKFGNIHPRTLAADLTGTGK----GAQA 249
Query: 304 FLEELIVRRELADNFCFYQPNYDSLKGAWE-WARKSLK-----DHASDKREHIYTKEQFE 357
+L EL R AD + + AW W R+ D A+D+R + ++
Sbjct: 250 YLRELAFRDFYADVLHHWP------ESAWHNWNRQFDDIDLDTDAAADRR-----FDAWK 298
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKY 412
+ +T PL +A ++ G MH +RM A + L W G A + D+
Sbjct: 299 QGRTGFPLVDAGMRQLAQTGFMHNRVRMVTASFLVKDLHLPWWWG-------ARWFLDQL 351
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+DG + G W+ D P F R N +KFD DG AYV + V
Sbjct: 352 -LDGDMASNQHGWQWAAGTGTDAA----PYF---RVFNPEAQAKKFDPDG--AYVAQWV 400
>gi|424865467|ref|ZP_18289332.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
gi|400758735|gb|EJP72937.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
Length = 471
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 38/256 (14%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A VL D FL + +Y +RN+P+K S +SPYL G +S++RC +E+ K
Sbjct: 204 GEKGAKHVL----DDFLKFKASHYDKNRNDPIKDNT-SRISPYLALGILSSKRCIIESIK 258
Query: 293 ARKL----CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
L + I +++E IV RE N P K + +S D+ D R
Sbjct: 259 LNNLDIYSGNKGILKWIDE-IVWREFYRNIMHSFP-----KVSMGKPFQSYTDNI-DWRY 311
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-EWTTGPEEALA 403
+ ++ T P+ +A+ +M+ G MH +R M++ K +L +W G +
Sbjct: 312 NEAELTAWQSGNTGFPIIDAAMRQMLNEGWMHNRLRMVVAMFFTKNMLHDWRLGEK---- 367
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
++ + + D NG G WS G P F R N + FD +G
Sbjct: 368 --FFMENLIDADFSSNNG--GWQWSAS----TGTDAAPYF---RIFNPITQSKNFDKNG- 415
Query: 464 IAYVKRIVGGTKKRRA 479
++K+ + K A
Sbjct: 416 -EFIKKFIPELKDLDA 430
>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris HaA2]
Length = 487
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 156/399 (39%), Gaps = 60/399 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
PV+ W D R+ D+ AL HA + + + V Q +AR +G ++ +
Sbjct: 8 PVIVWFRDDLRLSDHPAL-HAAAASGSPLICIYVHDEQSPQLRPPQARPIGGAARWWLAQ 66
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
LR L +E+ L L +G A + R+ A+ + + + R D +
Sbjct: 67 SLRALAAELEQRGARLI-LRRGPAAAIVGELARQVDAAAVHWNEIEIAPHRAIADDLAET 125
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY------LIDYPMLEQPI 198
+S S H +++ VA ++ +T G+ ++ + L D P +P+
Sbjct: 126 LSMSGIDHHRHPGDLL---VAPSEI----RTKDGRGLRVFTPFWRRVLGLGDPP---KPL 175
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPE------IGWCESGEDAAMEVLKGSKDGFLTKR 252
R D S A + P+ W GE AA ++L D R
Sbjct: 176 PAPAMLRAGPDIASDDPATWQLEPTAPDWAGGLRASWT-PGERAAHDLLTAFLD-----R 229
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKLCPEAIDTFLEEL- 308
L Y DR+ P + A S LSP+L FG+IS ++ AR R ID FL EL
Sbjct: 230 LPGYAADRDRPDR-DATSLLSPHLRFGEISPRQLWYAARFAAAKRPAIAADIDKFLSELG 288
Query: 309 ---IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
R L D+ + N S A+ W R A +++ +T P+
Sbjct: 289 WREFCRHLLHDHPDLAERNLQSAFDAFPWTRDDAALAA------------WQRGRTGYPI 336
Query: 366 WNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPE 399
+A ++ + G MH +RM A +++W G E
Sbjct: 337 VDAGMRQLWHTGVMHNRIRMVVASFLVKHLLIDWRLGEE 375
>gi|384181025|ref|YP_005566787.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 476
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 107/453 (23%), Positives = 181/453 (39%), Gaps = 63/453 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +QR +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--IGSASK--WWLHHAIIDVQRQLEAV 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ WV +K K N + ++ +PI K Q I + +
Sbjct: 124 SHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ------IVPKPISK----VQRIKGGNSLP 173
Query: 216 AVLRKGAE--VPEIGWC---ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W ES D E + F + +L +Y R+ P A S
Sbjct: 174 ASLSVSELHLLPTIRWTTHMESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFP-NENAHS 232
Query: 271 GLSPYLHFGQISAQ---RCALEARKARK--LCPEAIDTFLEELIVRRELADNFCFYQPN- 324
L+PYL FGQIS + ++ R+ L + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKWMYHYLIDKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPFT 291
Query: 325 -YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
Y L K+ + +K E + T ++K +T P +A E+ G MH
Sbjct: 292 VYKPL-------NKNFEHFPWNKEEELLT--VWQKGETGYPFIDAGMRELWQTGFMHNRA 342
Query: 384 RM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK 438
RM + K +L W G A + D +D N +G W V G
Sbjct: 343 RMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGAD 390
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y+++ V
Sbjct: 391 ASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|423655980|ref|ZP_17631279.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
gi|401292211|gb|EJR97875.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
Length = 476
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 100/451 (22%), Positives = 180/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQEETFS--IGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSLP 173
Query: 216 AVLRKG--AEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS ++ DK E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
tsutsugamushi str. Ikeda]
gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
tsutsugamushi str. Ikeda]
Length = 505
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 163/394 (41%), Gaps = 38/394 (9%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA-FNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W+ R+ R+ DN A+ +++K +P+ + + F R+L F+ + L
Sbjct: 8 IVWLRRNLRLEDNKPFAEAL-KSSKKIIPIFIFDTTILQNFSNPLDRRLSFLANTIYNLN 66
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
++E L L+ G + + IP + + + D + P IR K +
Sbjct: 67 SELQELEGNLLVLY-GNSVEIIPKLIEKLNIQTIYADEEYDPENVIRDQKITNLLEFNGK 125
Query: 149 VTIHEVDAHNVV-PVWVASEKLEYSAKTLRGKINKLLPEYL-IDYPMLEQP---IEKWTG 203
+ V H ++ P + + K +Y + N +YL + +E+ ++
Sbjct: 126 SKLELVCDHLLLKPGSIVTHKKQYYMRY--NPYNTAFKQYLRKNCSCIERSNYRLDHRLV 183
Query: 204 TRQSIDWDSIIAAV--LRKGAE--VPEIGWCESGEDAAMEV-LKGSKDGFLTKRLKNYPT 258
+ +SID S+ + L GA + +IG+ ++ + K + F+ + +Y T
Sbjct: 184 SLESIDLSSLNLKIINLNHGASEILNQIGYTYQKDNIWQPIKAKNILNNFIQNNITSYRT 243
Query: 259 DRNNP--LKPRALSGLSPYLHFGQISAQRC---ALEARKARKLCPEAIDTFLEEL----- 308
+ N L S +SPYL FG +S + C A+ A + EAI +E
Sbjct: 244 NNTNQNLLYLNNSSTISPYLRFGLVSIRECFSKAIAADSKALITDEAIGKTEKEKGWIDG 303
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
++ RE + F PN S E+ K + +K IY K F + +T P+ +A
Sbjct: 304 LIHREFYASLLFRFPNTVS----EEFQDKYRNNIPWEKDLEIYCK--FTEGKTGYPMIDA 357
Query: 369 SQMEMVYNGKMHGFMRMYWAK-----KILEWTTG 397
S +++ +G MH R A +L+W G
Sbjct: 358 SIKQLLRDGWMHNLARTIVANFFTKYLLLDWRLG 391
>gi|389751445|gb|EIM92518.1| hypothetical protein STEHIDRAFT_143862 [Stereum hirsutum FP-91666
SS1]
Length = 559
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 26 KKRGPVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGF 81
+K VVYWM D R+ DN AL A +QA K +VP+ V F + Q A R++ F
Sbjct: 40 RKGDAVVYWMRMEDMRISDNRALHQASEQAKKEDVPLLVLFTISPQDYAAHDRSPRRIDF 99
Query: 82 MLRGLRLLQRN-IEETFQILFFL 103
LR LR LQ + +EE F L +
Sbjct: 100 TLRNLRCLQASLVEELFVPLHIV 122
>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase [Bacillus cereus B4264]
gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
Length = 476
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 104/456 (22%), Positives = 182/456 (39%), Gaps = 69/456 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P A++ K+ + +K E + ++K +T P +A E+ G MH
Sbjct: 287 HYPF-----TAYKPLNKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMH 339
Query: 381 GFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
RM + K +L W G A + D +D N +G W V
Sbjct: 340 NRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGS 387
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y++R +
Sbjct: 388 GADASPYF---RIFNPITQGEKFDKNG--EYIRRWI 418
>gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Rhodobacterales bacterium HTCC2255]
gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Rhodobacterales bacterium HTCC2255]
Length = 465
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 81/378 (21%), Positives = 145/378 (38%), Gaps = 61/378 (16%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+ P++ W RD R D+ AL A + + +P+ + +F+ A +LG +
Sbjct: 4 QAPIIIWFRRDFRFSDHEAL-SAAHSSGRPIIPIFIFDEVFEALGAAPKWRLGL---AIE 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
++ +E L L +G A + + V E GA D +R D
Sbjct: 60 CFKKKLERMGSNLI-LRRGNACEILQELVNETGAL----------------DVYWSRAYD 102
Query: 148 SVTIH------------EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-- 193
V+IH H + WV K + K + + ++ +
Sbjct: 103 PVSIHRDTKVKSLLNGTSFKGHVLFEPWVPKTKSGENFKVYTPFWRHVSSQLTVNSTLSK 162
Query: 194 ---LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
L P W + +W + + +G V + GE+ A+ L + F+
Sbjct: 163 ISKLHSP-HVWPKSDLLSNWG--LGEEMNRGRNVVS-KYINVGEEVALNKL----ENFIV 214
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
++ Y DR+ P++ A SGLS L +G+IS + R + FL+EL V
Sbjct: 215 SKVNGYKIDRDFPMR-HATSGLSENLTYGEISPRLIFNSLRNTFDKNDLGAEHFLKEL-V 272
Query: 311 RRELADNFCFYQPNYDS--LKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
RE A + ++ P D+ +G W ++ K + +A + + + +T +
Sbjct: 273 WREFAYHLLWHFPKLDTQCWRGEWNDFPWKGINKNA----------KAWMQGRTGQSFVD 322
Query: 368 ASQMEMVYNGKMHGFMRM 385
A E+ G MH +RM
Sbjct: 323 AGMRELYTTGTMHNRLRM 340
>gi|387824331|ref|YP_005823802.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
Length = 464
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 28/171 (16%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GE AA ++L + FLT ++K+Y R+ + A S LSPYLHF
Sbjct: 184 PKLTWQNIIKQWQVGEKAAAQLL----EQFLTTKIKDYKIARDY-MSTDATSTLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKS 338
G+IS + A ++ + F++EL+ R +F +YQ Y E K+
Sbjct: 239 GEISPNQI-FNAVQSLDSIGNNEEHFIKELVWR-----DFSYYQIYYYP-----ELHNKN 287
Query: 339 LK----DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + A D + K ++K QT P+ +A ++ G MH +RM
Sbjct: 288 INQKFDNFAWDNNATLLKK--WQKGQTGIPIVDAGMRQLWQTGYMHNRVRM 336
>gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
fischeri NRRL 181]
gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
fischeri NRRL 181]
Length = 584
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 127/287 (44%), Gaps = 32/287 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGLR 87
VVYW D R+ DN AL A + A ++N+P+ + L Q L A ++ +LR L
Sbjct: 93 VVYWFKSDLRLYDNRALRLAYETAKEHNIPLIALYILSPQDLTAHLLSPARVDLILRTLH 152
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIRRCKD--K 140
L+R++ E I +L E NIP + ++ GA+ L + + E+RR +
Sbjct: 153 QLKRDLSE-LDIPLYLETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELRREAKLVR 211
Query: 141 ICNRVSDSV-TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP----MLE 195
+C + T H DA V P V S++ + A + + YL + P + E
Sbjct: 212 LCAKNGIKFDTAH--DACVVPPGQVTSQQGKQYA--VYSPWYRTWLAYLNENPDCLELSE 267
Query: 196 QPIEKWTGTRQSID--WDSIIAAVLRKGA----EVPEIGWC-ESGEDAAMEVLKGSKDGF 248
+P R+ +DS + A E +G +GE A+ L + F
Sbjct: 268 EPGSNPGDARKYFKELFDSEVPAAPENKQLSEEEKQHLGQLYPAGEHEALRRL----EAF 323
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
L +++++Y RN + + S LSPY G +SA+ AR+A K
Sbjct: 324 LEEKVRDYAEARNM-VSGQTTSILSPYFASGLLSARTAIEHARRANK 369
>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
Length = 478
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 101/247 (40%), Gaps = 38/247 (15%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALE 289
GE A E L GS FL + LK Y RN P P +S LSP+LHFG+IS ++ +
Sbjct: 200 GEAGASERL-GS---FLEEGLKGYGKLRNRPDLPN-VSRLSPHLHFGEISPRQIWHATQD 254
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
R + FL E I RE + N ++ P S E R + ++ +E
Sbjct: 255 VMDRRSSLGDDGMKFLSE-IAWREFSHNLLYHFPKLPS-----ENWRSTFDEYPW--KEP 306
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAI 404
E+++K QT P+ +A E+ G MH +RM A + L W G
Sbjct: 307 DGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAASFLIKHLRLHWRHG------- 359
Query: 405 AIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+ D +D N G W V G P F R N KFD DG
Sbjct: 360 EAWFRDTL-VDADLANNSAGWQW----VAGSGADAAPYF---RVFNPITQGEKFDPDG-- 409
Query: 465 AYVKRIV 471
Y+++ V
Sbjct: 410 NYIRQWV 416
>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628269|ref|ZP_17604018.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401270133|gb|EJR76158.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
Length = 476
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 177/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNLALFEAVQSGEV--LPVYIQDETFS--IGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPFSRVQSIKWGNSLP 173
Query: 216 AVLRKG--AEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS ++ DK E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|387813308|ref|YP_005428790.1| deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating
enzyme) [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338320|emb|CCG94367.1| deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating
enzyme) [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 463
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 19/157 (12%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSG---LSPYLHFGQISAQRCAL 288
+GEDAA E L + FL R K+Y +R+ P AL G LSPYL G +S ++C +
Sbjct: 202 TGEDAAHEQL----EAFLADRAKDYKDNRDFP----ALDGTSQLSPYLANGVLSGRQCLI 253
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
A+++ L E ++T++ E I R+ + ++ P S+ A++ ++L + E
Sbjct: 254 AAKQS-GLSGEGVETWINE-IAWRDFYIHILYHYPRV-SMGRAFKEETEALAWNTPG--E 308
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
H E +++ +T P+ +A+ ++ G MH +RM
Sbjct: 309 HF---EAWKEGRTGIPIVDAAMRQLKATGWMHNRLRM 342
>gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
Length = 467
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 113/478 (23%), Positives = 181/478 (37%), Gaps = 100/478 (20%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA----FNLFDQFLGAKARQLGFMLRGLR 87
+ W +D RV DN AL HA + + + A + L D A R+ F+ R L
Sbjct: 5 LVWFRQDLRVYDNTALWHACLDPEADVIALFCATPQQWRLHDM---APVRE-RFLWRNLT 60
Query: 88 LLQRNIEETFQILFFLFQGEAED---NIPNFVRECGASLLVTDFS-PLREIRRCKDKICN 143
L+ + E L ED ++P G + L + P+ E +R + I
Sbjct: 61 ALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNEQKRDR-AIRE 119
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG 203
++D V+ H + P+ G + K Y + P IE+W
Sbjct: 120 ALADKVSCHWHHDFGIKPL---------------GLLTKTGNPYTVFSPFKRAWIERWRA 164
Query: 204 TRQSI----DWDSIIAAV-----LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
I + AAV L + + W +GEDAAM L F R+
Sbjct: 165 DPAPIYPAPEPRRCSAAVPGSELLASDKQAMDQFW-PAGEDAAMNRLA----HFCEDRID 219
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK----LCPEAIDTFLEELIV 310
+Y R+ P +P S LSPYL G IS + C A +A + + DT++ ELI
Sbjct: 220 HYKAKRDLPAEP-GTSELSPYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWISELIW 278
Query: 311 RR----------ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
R ++ N CF + K W R + +D A+ + + +
Sbjct: 279 RDFYIHILDTYPRVSMNRCF---RVEGEKIPW---RNAPEDFAA-----------WCEGR 321
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
T P+ +A+ ++V G MH +RM +A++L + ID R+
Sbjct: 322 TGYPIVDAAMRQLVQTGWMHNRLRML-----------------VAMFLTKQLLIDWREGE 364
Query: 421 GYV--GCMWSICGVHDQGWKERPVFGK-----IRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ + G ++ GW+ G R N +KFD G A+++R V
Sbjct: 365 RFFMQHLIDGDLGANNGGWQWAASTGTDAAPYFRIFNPITQSQKFDASG--AFIRRFV 420
>gi|398803290|ref|ZP_10562396.1| deoxyribodipyrimidine photolyase [Polaromonas sp. CF318]
gi|398097169|gb|EJL87481.1| deoxyribodipyrimidine photolyase [Polaromonas sp. CF318]
Length = 506
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 110/481 (22%), Positives = 184/481 (38%), Gaps = 79/481 (16%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD---------QFLG 73
S+ KK + W RD R +DN AL HA+ + ++ D +F+
Sbjct: 16 SMQKKYRAGLMWFRRDLRAQDNAALHHALKACKQVFCVFVFDRDILDALPRADRRVEFIH 75
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPL 131
L L+ L N + ++ G A + +P E + D P
Sbjct: 76 GSVLSLDGQLQRLGAAHGNPDAGLIVV----HGHAAEAVPRLAAEWAVDAVFANHDDEP- 130
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY---- 187
+ + R S V H H V E+ E TL GK + Y
Sbjct: 131 QSLARDAAVQAALESRGVAFHSFKDH------VIFERQE--VLTLAGKPYTVFTPYKNAW 182
Query: 188 ---LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP---EIGWCESGEDAAMEVL 241
+ D+ + P+E++ + +AAV + +P E+G+ E +A+++
Sbjct: 183 LRKVDDFYLKPYPVERYG---------AALAAVPDRKRAIPSLAELGF-EKTNLSALKIP 232
Query: 242 KGSKDGF-----LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
GS+ G R+ NY R+ P + S L +L FG +S +R A A
Sbjct: 233 TGSEGGEGLFEEFKGRVANYKAARDFP-AIKGPSYLGVHLRFGTVSIRRLAAAALGPEHR 291
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
E T+L ELI R D + N+ ++ GA++ +++ + + ++
Sbjct: 292 DSEGAATWLSELIWR----DFYAQILSNFPHAVHGAFKTEYDAIRWESGAGADTLFLA-- 345
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLND 410
+ + +T PL +A+ ++ G MH +RM A + ++W G A LND
Sbjct: 346 WCEGRTGYPLVDAAMAQINQTGYMHNRLRMVTASFLVKDLGIDWRRGERY---FAEKLND 402
Query: 411 KYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
D NG G W+ G +P F R N KFD DG ++++R
Sbjct: 403 ---FDLSANNG--GWQWAAS----TGCDAQPYF---RIFNPVSQSEKFDADG--SFIRRY 448
Query: 471 V 471
V
Sbjct: 449 V 449
>gi|350631876|gb|EHA20245.1| hypothetical protein ASPNIDRAFT_45910 [Aspergillus niger ATCC 1015]
Length = 585
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 168/407 (41%), Gaps = 66/407 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGLR 87
VV+W D R+ DN L A A ++ +P+ + L + L A A ++ MLR L
Sbjct: 94 VVHWFKTDLRLHDNRGLQMAYQVAREHKLPLIGLYILSPEDLTAHLSSAPRVDLMLRTLE 153
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIRRCKDKIC 142
LL+R++ E I ++ E ++IP + +E GA+ L + + E+RR +
Sbjct: 154 LLRRDLSE-LDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREAKLV- 211
Query: 143 NRVSDSVTIHEVDAHNVVPV----WVASEKLEYSAKT--LRGKINKL--LPEYL--IDYP 192
R+ I AH+ V V+ + +Y+ + R L PEYL D P
Sbjct: 212 -RLCARNGIRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVADEP 270
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
P E + + +A ++ +E + + E + E L+ + FL ++
Sbjct: 271 G-SNPGEARKHFKTLFGCEVPVAPENKRLSEEEKTRFRELYPEGEHEALR-RLEAFLEEK 328
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK-------------LCPE 299
+Y D N L R S LSPY G +SA+ +ARK K +
Sbjct: 329 ANDY-DDLRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNKGHLNRNQTGYTSWISEV 387
Query: 300 AIDTFLEELIVRRE-LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE- 357
A F + ++V + N CF +P + +L AW Y K+ F
Sbjct: 388 AWRDFYKHVLVHWPFICMNKCF-KPEFTNL--AWS-----------------YNKDHFNA 427
Query: 358 --KAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTG 397
+ +T P+ +A+ ++ + MH RM + +K +L +W G
Sbjct: 428 WCEGKTGYPIVDAAMRQIKHAAWMHNRTRMVVSSFLSKDLLIDWRRG 474
>gi|423641840|ref|ZP_17617458.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
gi|401277790|gb|EJR83729.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
Length = 476
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 178/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPFSRVQSIKWGNSLP 173
Query: 216 AVLRKG--AEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F +++L +Y R+ P + S
Sbjct: 174 ASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSRKLVSYSEGRDFPGQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS ++ DK E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|374619940|ref|ZP_09692474.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
gi|374303167|gb|EHQ57351.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
Length = 481
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 33/178 (18%)
Query: 222 AEVPE--IGW---CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
A VP+ GW E GED A L + FL + +Y R+ P + R S LSP+L
Sbjct: 191 AGVPDWAAGWEDIWEPGEDGAHNAL----EAFLDAPVAHYSEGRDLPAR-RYTSRLSPHL 245
Query: 277 HFGQISAQRCALEARKARKLCPE---AIDTFLEELIVRRELADNFCFYQPN-YDSLKGAW 332
FG+IS ++ A++ + PE AID FL E+ R FC+ + +D++
Sbjct: 246 KFGEISPRQVWASAQQRKLSAPEWTSAIDKFLAEIGWRE-----FCYQLIDLFDAMP--- 297
Query: 333 EWARKSLKDHAS-----DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ KD + + EH+ + +++ T P+ +A E+ G MH +RM
Sbjct: 298 ---DRPFKDQFAGFPWDNSEEHL---KAWQRGMTGYPIVDAGMRELWQTGFMHNRVRM 349
>gi|395493322|ref|ZP_10424901.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26617]
Length = 456
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 148/382 (38%), Gaps = 73/382 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFMLR 84
P++ W+ RD R+ D AL+ A+ N+ PV + L D +G +R ++
Sbjct: 3 PIILWLRRDLRLADQPALLAAI-----NDGPVIPVYILDDDTPEKYAMGGASRW--WLHH 55
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPL-----REIRRC 137
L L ++ E L L +G+ + + E GA+ + + F P + +
Sbjct: 56 SLEGLDSDLREKGSRLI-LRRGKCVEVLAQLAEETGATQVHCIRHFEPWWRKAEEAVAKH 114
Query: 138 KDKICNRVS-----DSVTIHEVDAHNV-VPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
D +C+ + S+T + + P W A ++ + P I
Sbjct: 115 LDLVCHDGNYLARPGSITTGSGGQYKIYTPFWRALKQ-------------HMPPPAPIHK 161
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES---GEDAAMEVLKGSKDGF 248
P KW + DW L G+ + GEDAA L K
Sbjct: 162 PAKIPAPSKWPKSDVLADW------TLLPTKPDWSTGFSDDWTPGEDAAHNRLNAFK--- 212
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
K+ +Y RN P + S LSP+LHFG++SA + A ++D FL E
Sbjct: 213 --KQADDYDDTRNFPSQ-EGSSRLSPHLHFGELSAA----QVWHAVADVGGSVDVFLSE- 264
Query: 309 IVRRELADNFCFYQPNYDSLKG-----AWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
I R+ A N P Y S A W +S KD +D + +++ +T
Sbjct: 265 IGWRDYAQNVILQYPEYGSKNAREKYDAMPW--RSGKDAHADLK-------AWQQGRTGY 315
Query: 364 PLWNASQMEMVYNGKMHGFMRM 385
P+ +A ++ G MH +RM
Sbjct: 316 PIVDAGMRQLWKTGWMHNRVRM 337
>gi|359434961|ref|ZP_09225201.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20652]
gi|357918397|dbj|GAA61450.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20652]
Length = 464
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 149/374 (39%), Gaps = 53/374 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQAAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C A+ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHIIEAPSFCDCTHELINFCKANSVKHIIANTEYELNEVNRDKAILNRCDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY----LIDYPMLEQPIEK 200
+S + T++E D + PV S K ++ K+ + L Y + + +
Sbjct: 121 LSITFTLYEGDL--IAPV--------GSVKNQSNEMYKVFTPFKRAWLKQYQNIHFSLPQ 170
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W T + I +D +++ + C E L D F+ +L +Y R
Sbjct: 171 WPLTSELIKFDE---------SDLLQSDGCSDKWPVDDETLTTVVDNFICDKLTSYDEQR 221
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTF--LEELIVR---RE 313
+ P + SGLSPYL G +S ++ ++ R L TF + ELI R R
Sbjct: 222 DIP-SIKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELIWREFYRH 280
Query: 314 LADNFCFYQ--PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
L F N++ A W RKS D + + + +T PL +A+ +
Sbjct: 281 LIAEFPKLSRGDNFNEKYNAVMW-RKSESDFKA-----------WCEGRTGYPLVDAAML 328
Query: 372 EMVYNGKMHGFMRM 385
++ G MH +RM
Sbjct: 329 QLKQTGWMHNRLRM 342
>gi|365880713|ref|ZP_09420069.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
gi|365291224|emb|CCD92600.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
Length = 422
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 34/175 (19%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A + L+G FL + +Y DR+ P A S LSP+L FG+IS ++ A
Sbjct: 146 QPGERTAQQRLRG----FLESAVSSYAADRDRP-DIDATSRLSPHLRFGEISPRQIWHAA 200
Query: 291 RKA---RKLCPEAIDTFLEELIVRRELADNFCF---------YQPNYDSLKGAWEWARKS 338
R A R + ID FL E + RE + + + QP++D W
Sbjct: 201 RFAAEERPALAKGIDKFLSE-VGWREFSRHLLYNNPDLATRNLQPSFDPFP----WT--- 252
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
+D A+ +++ QT P+ +A E+ + G MH +RM A +++
Sbjct: 253 -QDDAA--------LAAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVK 298
>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
Length = 433
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 161/387 (41%), Gaps = 89/387 (22%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGL 86
K V++W RD R+ DN L HA++ K + +FD
Sbjct: 2 KDNYVLFWHRRDLRIEDNIGLYHALNSGKK-----VIPLFIFDS---------------- 40
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
+L++ ++ ++ F E + I ++ AS+LV PL + K + +S
Sbjct: 41 DILEKLPKDDARVTFIY---EELEKINTTLQSHDASILVKHGKPLEVLEEIIGK--HEIS 95
Query: 147 DSVTIHEVDAHNV-----VPVWVASEKLEYSAKTLRGKI----NKLLPE----YLIDYPM 193
T H+ + + + V +AS+ +E+ KT + ++ N+++ Y+I P
Sbjct: 96 AVYTNHDYEPYAIARDKEVGELLASKNIEF--KTYKDQVIFERNEVVKADGDPYIIYTPY 153
Query: 194 LEQPIEKWT-GTRQSIDWDSIIAAVLRKGAEVP---EIGWCESGEDAAMEVLKGSKDGFL 249
++ ++K T S+D S +K P +IG+ S +++VL +
Sbjct: 154 SKKWLDKLTKNDYTSVDCASYYKNYAKKSFNFPSLKDIGFTAS----SIKVLPYT---MA 206
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+ NY RN P S LSP+L FG IS ++C ++ + FL+EL+
Sbjct: 207 ENMIDNYEDTRNFP-AIEGTSRLSPHLRFGTISVRKCVQNGLQSEN------NVFLKELV 259
Query: 310 VR-----------RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
R + + +NF + YD +K W +D+ E+ + + +
Sbjct: 260 WREFFMQILWHFPKSVTNNF---KSKYDGIK--WR----------NDEDEY----KAWCE 300
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRM 385
+T PL +A E+ +G MH +RM
Sbjct: 301 GKTGYPLVDAGMRELNESGYMHNRVRM 327
>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
Length = 476
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 106/459 (23%), Positives = 183/459 (39%), Gaps = 75/459 (16%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD-SVTIHE 153
L + +G ++ I + +++ + + + + P R + K+ + D + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDR--LKSNQKMKMMLEDKGIICKE 121
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
++H ++ W+ +K K N + ++ +PI + QSI W S
Sbjct: 122 FNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSS 171
Query: 214 IAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 172 LPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP- 226
Query: 265 KPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFC 319
A S L+PYL FGQIS + L + + C + + +F+ +LI RE +
Sbjct: 227 NQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI-WREFSYYLL 285
Query: 320 FYQPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
++ P Y L K+ + +K E + ++K +T P +A E+ G
Sbjct: 286 YHYPFTVYKPL-------NKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTG 336
Query: 378 KMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MH RM + K +L W G A + D +D N +G W V
Sbjct: 337 FMHNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----V 384
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y+++ V
Sbjct: 385 AGSGADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 478
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 107/275 (38%), Gaps = 47/275 (17%)
Query: 229 WCESGEDAAMEVLKGSKD---GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
W E ED G+KD FL L Y RN P P +S LSP+LHFG IS ++
Sbjct: 189 WAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLPN-VSRLSPHLHFGDISPKQ 247
Query: 286 --CALEARKARKLCPEAI-DTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARK 337
A + ARK + FL E I RE + + ++ P N+ A+ W R+
Sbjct: 248 VWSATQHATARKSSLSSDGHKFLSE-IAWREFSYHLLYHYPQLPEKNWRPAFDAYPW-RE 305
Query: 338 SLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKI-L 392
S +D ++++ T P+ +A E+ + G MH +RM + K + L
Sbjct: 306 SEED-----------LKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGSFLVKHLRL 354
Query: 393 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYS 452
W G + D +D N W V G P F R N
Sbjct: 355 HWKHG-------EAWFRDTL-VDADLANNSASWQW----VAGSGADAAPYF---RIFNPI 399
Query: 453 GCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKE 487
KFD DG YV+R V K L S E
Sbjct: 400 SQGPKFDPDG--KYVRRWVPELAKLPTKHLFSPFE 432
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 110/475 (23%), Positives = 190/475 (40%), Gaps = 81/475 (17%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W+ RD R+ D+ AL A+ Q+ + + D L A R++ F+ R L LQ +
Sbjct: 9 WLRRDLRLDDHAALSSALQQSREVVCVFVFDRAILDS-LPASDRRVDFIHRSLCELQARL 67
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRVSDS-VT 150
++ L + G A++ +P E GA ++ D P R + + ++ +
Sbjct: 68 QQHGSTLVCRY-GWADEALPALAAELGAQVVFAAQDDEPASVTRDAR--VAGQLEQAGCI 124
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKT--------LRGKINKLLPEYLIDYPMLEQPIEKWT 202
+H V H + A ++L T R + +L P + ++P+
Sbjct: 125 LHLVKDHTLR----ARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCP 180
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
Q + +A++ + +GW ++G A L RL Y +R+
Sbjct: 181 LPAQPL---PSLASMGFTDTGLAALGW-QAGSTGAQAALAQ-----FLPRLPLYHEERDF 231
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI----------VRR 312
P A S LSP+L FG +S ++ R A E +L EL+ R
Sbjct: 232 PAL-DATSRLSPHLRFGTLSVRQL---VRLATDAGHEGAQAWLNELVWRDFYHQVLWHRP 287
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
+LA F +P YD L +W ++ DH + + + +T PL +A+ +
Sbjct: 288 QLAQGHAF-KPVYDQL----DWPGEA--DHFA----------AWTEGRTGYPLVDAAMRQ 330
Query: 373 MVYNGKMHGFMRM----YWAKK-ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
+ G MH +RM + AK +L+W G EA L+ + + NG G W
Sbjct: 331 LRQTGWMHNRLRMICASFLAKDLLLDWRLG--EAWFAECLLDFDFAAN----NG--GWQW 382
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSL 482
+ G +P F R N RKFD DG+ +++ V + A+++
Sbjct: 383 AA----STGCDAQPYF---RIFNPVSQSRKFDPDGH--FIRHFVPELARLDAEAI 428
>gi|455648681|gb|EMF27538.1| deoxyribodipyrimidine photo-lyase [Streptomyces gancidicus BKS
13-15]
Length = 458
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 33/219 (15%)
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
DR++ L A S LSPYLHFG +SA +ARK EA F+ +L R+
Sbjct: 220 ADRHDDLAGDATSRLSPYLHFGTLSAAEAIHQARKQGGPGAEA---FVRQLCW-RDFHHQ 275
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
+P + +W ++ DH D+ + + + +T P+ +A+ ++ + G
Sbjct: 276 VLAARP-----EASWR-DYRTRDDHWRDEEDAAGDIAAWREGRTGYPIVDAALRQLRHEG 329
Query: 378 KMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MH R+ A + ++W G L + +DG N + W+
Sbjct: 330 WMHNRARLLTASFLTKTLYVDWRIGARHFLDLL--------VDGDVVNNQLNWQWAAG-- 379
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G RP R +N + R+FD DG AYV+R V
Sbjct: 380 --TGTDTRP----HRVLNPTVQARRFDPDG--AYVRRWV 410
>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
Length = 483
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 111/470 (23%), Positives = 173/470 (36%), Gaps = 84/470 (17%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF--LGAKARQLGFMLRGLR 87
PV+ W D R+ D+ AL HA Q+ + V V + D+ LG AR ++ + LR
Sbjct: 9 PVIVWFRDDLRLADHPAL-HAAAQSGAPVLCVYVLDEVSDEVRALGGAARW--WLAQSLR 65
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL---VTDFSPLREIRRCKDKICNR 144
L+ + +L L +G A + ++ A+ + + +P R +
Sbjct: 66 SLEAELRAAGALLI-LRRGPAAAVLAELAQQSDAAAVHWNEIEIAPHRAVADALADALTM 124
Query: 145 VSDSVTIHEVDAHNVVPVWVASEK-------LEYSAKTLR-GKINKLLPEYLIDYPMLEQ 196
+ H D V P + S+ + + L G + LP P
Sbjct: 125 AGIAYHRHSGDT-LVAPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPAALRPAPAL 183
Query: 197 P---IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
P + W + DW + A R G E ++ RL
Sbjct: 184 PGAQLSDWQLEPTAPDWAGGLRATWRPG-----------------EAAAKTRLADFLARL 226
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCPEAIDTFLEEL-- 308
Y R+ P + SGLSPYL FG+IS ++ AR A R ID FL EL
Sbjct: 227 PGYAEGRDYPDR-HVTSGLSPYLRFGEISPRQVWYAARFAAAERPAIAPDIDKFLSELGW 285
Query: 309 --IVRRELADNFCF----YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
R LAD+ QP +D+ W+ +L +++ +T
Sbjct: 286 REFCRHLLADHPDLAARNLQPAFDAFP--WQSDDGALT--------------AWQRGRTG 329
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDG---RDP 419
P+ +A E+ ++G MH +RM ++ + L I L +++ D DP
Sbjct: 330 YPIVDAGMHELWHSGVMHNRVRMVVGSFLV-------KHLLIDWRLGEQWFWDTLVDADP 382
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
G + G G P F R N KFD DG AY++R
Sbjct: 383 GSNPGNWQWVAGC---GADAAPYF---RVFNPVLQSEKFDADG--AYIRR 424
>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|423352873|ref|ZP_17330500.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|423373016|ref|ZP_17350356.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|423567933|ref|ZP_17544180.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|401090879|gb|EJP99030.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|401097348|gb|EJQ05371.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|401211272|gb|EJR18020.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
Length = 476
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 100/458 (21%), Positives = 175/458 (38%), Gaps = 73/458 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + + + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFP-NQNAHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN- 324
L+PYL FGQIS + L + K C + +++F+ + I RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYHYPFT 291
Query: 325 -YDSLKGAWEW-----ARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
Y L ++E+ +K L+ ++K +T P +A E+ G
Sbjct: 292 VYKPLNKSFEYFPWNNEKKLLR--------------VWQKGKTGYPFIDAGMRELWQTGF 337
Query: 379 MHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
MH RM + K +L W G A + D +D N +G W V
Sbjct: 338 MHNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VA 385
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD DG Y+++ V
Sbjct: 386 GSGADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
Length = 485
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 117/475 (24%), Positives = 175/475 (36%), Gaps = 87/475 (18%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA-RQLG-----FMLR 84
+ W D R+ D+ ALI A D + + L D G R LG ++
Sbjct: 8 AIVWFRDDLRLSDHAALIAARDA----GATLICLYVLDDTETGKHGPRSLGAAAQWWLAN 63
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA-SLLVTDFSPLREIRRCKD---- 139
LR L ++++ Q L L +G+A + +P RE A ++ D E R +D
Sbjct: 64 SLRALDTDLKKLGQHLV-LRRGDAHEVLPKLAREANAKAVFWIDSEVSAEAARARDVAEA 122
Query: 140 ----------KICNRVSDSVTIHEVDAHNV---VPVWVASEKLEYSAKTLRGKINKLLPE 186
+ ++ +I + H + P W + L + KL P
Sbjct: 123 LKEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRVRAQGEPPRPL-AAVRKLPPP 181
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+ + + +E W DW A R+ W GE A L
Sbjct: 182 VVS---LKSENLEDWQLEPTRPDW----AGGFRET-------WT-PGEAGAHRRLHD--- 223
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDT 303
FL +K Y R+ P K A S LSP+L FG+IS ++ AR A + P I+
Sbjct: 224 -FLDGAIKGYAEGRDFPGKDHA-SHLSPHLRFGEISPRQVFHAARFAAERHPALSRDIEK 281
Query: 304 FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDK--REHIYTKEQFEKAQT 361
FL EL RE + F P+ R +L+ D R +++ +T
Sbjct: 282 FLSELGW-REFCRHLLFDHPDLH---------RHNLQSSFDDFPWRRDAKALRAWQQGRT 331
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDG 416
P+ +A E+ + G M +RM A +L+W G + + D +D
Sbjct: 332 GYPIVDAGMRELWHTGAMQNRIRMVTASFLVKHLLLDWRDGEQ-------WFWDTL-VDA 383
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
DP G + G G P F R N KFD DG AYV R V
Sbjct: 384 -DPGSNPGNWQWVAGC---GADAAPYF---RIFNPILQGEKFDPDG--AYVARWV 429
>gi|347528151|ref|YP_004834898.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
gi|345136832|dbj|BAK66441.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
Length = 458
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 146/376 (38%), Gaps = 61/376 (16%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFMLR 84
PV+ W+ RD R+ D AL+ A + PV + L D+ +GA +R + L
Sbjct: 4 PVILWLRRDLRLGDQAALLAACAEG-----PVVPVYVLDDETPDHRRMGAASR---WWLH 55
Query: 85 G-LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPL-REIRRCKDK 140
G L L ++ + L L +G A++ +P RE GA + + + P R R +
Sbjct: 56 GSLASLAGDLRASGSRLV-LRRGRADEVLPALAREVGARRVHALHHYEPWWRNAERAIAR 114
Query: 141 ICNRV-SDSVTIHEVDAHN---------VVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+ + V D +H P W A + + + P
Sbjct: 115 VLDLVLHDGNYLHPPGLLKSGSGSPYRIFTPFWRALRETMPPPEPMARPDKIPAPS---S 171
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P E ++ W+ S DW + +A + GE A++ L+ D
Sbjct: 172 WPASEH-LDDWSLRPSSPDWATGMARA------------WQPGEQGALDRLEAFADS--- 215
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+Y RN P S LSP+LHFG+IS + R AR+ + +L EL
Sbjct: 216 --AGDYDIARNLP-SVEGSSRLSPHLHFGEISP--SLIWHRIARRDG--RTEPYLREL-A 267
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHA-SDKREHIYTKEQFEKAQTADPLWNAS 369
R+ A P + S G R D D RE E +++ +T P+ +A
Sbjct: 268 WRDYAQTVILQHPRHGSANG-----RAQFDDFPWRDLREAASDFEAWKRGRTGYPIVDAG 322
Query: 370 QMEMVYNGKMHGFMRM 385
++ G MH +RM
Sbjct: 323 MRQLWTTGWMHNRVRM 338
>gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
Length = 483
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 153/393 (38%), Gaps = 63/393 (16%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W+ RD R+ D+ + A + PV +A + D A + L
Sbjct: 6 PILLWLRRDFRLSDH----PMLSAAAASGRPV-LALFILDPLAEAYGAAPKWRLEQALAA 60
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRVSD 147
+ L +G A + + E GA + D P R + K R ++
Sbjct: 61 FAPALAACGVPLVLRRGPALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTALR-AE 119
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY--LIDYPMLEQPIEKWTGTR 205
+ D + W + +T +G ++ Y + + P+ T R
Sbjct: 120 GLEARSFDGQLLFAPW--------AVQTGQGGPYRVYTPYWRAVRGLTVAPPLAPVTALR 171
Query: 206 -------QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+S+D + A+ R GA V + + GE AA L + FL + ++ Y
Sbjct: 172 PGPVLRGESLDALGLGRAMRRGGAVVAK--YARVGEAAAQARL----ERFLREGIETYQA 225
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
R+ L A S LS +L +G+IS + +A +TFL+EL V RE A +
Sbjct: 226 RRDF-LAENATSELSEHLAWGEISPRVIWHAGAQAMAEGRAGAETFLKEL-VWREFAWHL 283
Query: 319 CFY---------QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
FY +P++DS WA +S E++ + QT +P+ +A+
Sbjct: 284 MFYYPRLATENWRPDWDSFP----WAGESA------------AAERWRRGQTGEPIVDAA 327
Query: 370 QMEMVYNGKMHGFMRM----YWAKKIL-EWTTG 397
EM G+MH RM Y K +L +W G
Sbjct: 328 MREMYVTGRMHNRARMIVASYLTKHLLTDWRIG 360
>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425266|ref|ZP_17402297.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|423506140|ref|ZP_17482730.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449089482|ref|YP_007421923.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112481|gb|EJQ20359.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|402449071|gb|EJV80909.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449023239|gb|AGE78402.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 476
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 106/461 (22%), Positives = 181/461 (39%), Gaps = 74/461 (16%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ +
Sbjct: 8 MFQKDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTI 151
+ L + +G ++ I + +++ + + + + P R K K+ +
Sbjct: 62 KALGSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIIC 119
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD 211
E ++H ++ W+ +K K N + ++ +PI + QSI W
Sbjct: 120 KEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPINR----VQSIKWG 169
Query: 212 SIIAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
+ + A L +P I W E E+ A + K F + +L +Y R+
Sbjct: 170 NSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDF 225
Query: 263 PLKPRALSGLSPYLHFGQISAQ-----RCALEARKARKLCPEAIDTFLEELIVRRELADN 317
P S L+PYL FGQIS + + L + +++F+ +LI RE +
Sbjct: 226 P-NQNVHSMLAPYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLI-WREFSYY 283
Query: 318 FCFYQPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
++ P Y L KS + +K E + ++K +T P +A E+
Sbjct: 284 LLYHYPFTVYKPL-------NKSFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQ 334
Query: 376 NGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
G MH RM + K +L W G A + D +D N +G W
Sbjct: 335 TGFMHNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW--- 383
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
V G P F R N KFD +G Y++R V
Sbjct: 384 -VAGSGADASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 150/397 (37%), Gaps = 73/397 (18%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
+K P + W +D R+ DN AL HA +A +PV + A Q ++
Sbjct: 4 EKPAPAILWFRKDLRLDDNPAL-HAAIEAGGPVIPVYIREPAHLNIGPLGAAQAWWLHHS 62
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE-------IRRCK 138
L L+ +++ L F+ G+AED + + VR+ A + + + R I K
Sbjct: 63 LAALKASLKSLSGDLIFI-SGKAEDVLTDLVRKTNAKTVFVNRAYERTLFDRGIAIELKK 121
Query: 139 DKICNRVSDSVTIHE-----VDAHNV----VPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
I R +HE A N P W A +K+ + PE+
Sbjct: 122 HDIAIRAFHGQLLHEPKSIRTGAGNAFKVFTPFWNALQKVGEPQEPTDAPTKIPSPEH-- 179
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P+ E ++ W + DW + + W GE A E L D
Sbjct: 180 -FPLSEN-LDHWALLPKKPDWAADFGRM-----------WT-PGEAGAQEKLADVVD--- 222
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+ L++Y R+ P A S LSP+L G++S R R L P+A +
Sbjct: 223 -RDLQDYKRGRDLP-SVHATSLLSPHLAHGEVSPARI---WHAVRGLPPKASEDVAH--- 274
Query: 310 VRRELA-DNFCF---------YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK- 358
RRELA +FC+ + N+D ++W Y ++F
Sbjct: 275 FRRELAWRDFCYNLLAEFPKLHDRNWDDRFDGFKWE---------------YDAKEFSAW 319
Query: 359 --AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
T P+ +A ++ G MH +RM A +++
Sbjct: 320 TMGLTGYPIVDAGMRQLWRTGFMHNRVRMITASFLIK 356
>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
Length = 476
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 102/452 (22%), Positives = 180/452 (39%), Gaps = 61/452 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLRHAIMDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D E + F + +L +Y R+ P +
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ-NVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
++ KS + +K E + ++K +T P +A E+ G MH R
Sbjct: 291 -----TVYKPLNKSFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHNRAR 343
Query: 385 M----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
M + K +L W G A + D +D N +G W V G
Sbjct: 344 MAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADA 391
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 392 SPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|375285088|ref|YP_005105527.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
gi|358353615|dbj|BAL18787.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
Length = 469
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 100/458 (21%), Positives = 175/458 (38%), Gaps = 73/458 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 4 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 57
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + + + K+ + D +T E +
Sbjct: 58 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCKEFN 116
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 117 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 166
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 167 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFP-NQNAHS 225
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN- 324
L+PYL FGQIS + L + K C + +++F+ + I RE + ++ P
Sbjct: 226 MLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYHYPFT 284
Query: 325 -YDSLKGAWEW-----ARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
Y L ++E+ +K L+ ++K +T P +A E+ G
Sbjct: 285 VYKPLNKSFEYFPWNNEKKLLR--------------VWQKGKTGYPFIDAGMRELWQTGF 330
Query: 379 MHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
MH RM + K +L W G A + D +D N +G W V
Sbjct: 331 MHNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VA 378
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD DG Y+++ V
Sbjct: 379 GSGADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 411
>gi|145258924|ref|XP_001402217.1| deoxyribodipyrimidine photo-lyase [Aspergillus niger CBS 513.88]
gi|134074832|emb|CAK38946.1| unnamed protein product [Aspergillus niger]
Length = 584
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 168/407 (41%), Gaps = 66/407 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGLR 87
VV+W D R+ DN L A A ++ +P+ + L + L A A ++ MLR L
Sbjct: 94 VVHWFKTDLRLHDNRGLQMAYQVAREHKLPLVGLYILSPEDLTAHLSSAPRVDLMLRTLE 153
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIRRCKDKIC 142
LL+R++ E I ++ E ++IP + +E GA+ L + + E+RR +
Sbjct: 154 LLRRDLSE-LDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREAKLV- 211
Query: 143 NRVSDSVTIHEVDAHNVVPV----WVASEKLEYSAKT--LRGKINKL--LPEYL--IDYP 192
R+ I AH+ V V+ + +Y+ + R L PEYL D P
Sbjct: 212 -RLCARNGIRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVADEP 270
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
P + + + +A ++ +E + + E + E L+ + FL ++
Sbjct: 271 G-SNPGDARKHFKTLFGCEVPVAPENKRLSEEEKTRFRELYPEGEHEALR-RLEAFLEEK 328
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK-------------LCPE 299
+Y D N L R S LSPY G +SA+ +ARK K +
Sbjct: 329 ANDY-DDLRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNKGHLKRNQTGYTSWISEV 387
Query: 300 AIDTFLEELIVRRE-LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE- 357
A F + ++V + N CF +P + +L AW Y K+ F
Sbjct: 388 AWRDFYKHVLVHWPFICMNKCF-KPEFTNL--AWS-----------------YNKDHFNA 427
Query: 358 --KAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTG 397
+ +T P+ +A+ ++ + MH RM + +K +L +W G
Sbjct: 428 WCEGKTGYPIVDAAMRQIKHAAWMHNRTRMVVSSFLSKDLLIDWRRG 474
>gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
Length = 505
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 154/405 (38%), Gaps = 72/405 (17%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+ + L + PVV W DQR+ DN AL HA+D + PV + R
Sbjct: 1 MTRSDLPHEARPVVVWFRDDQRLADNPALTHALDTGH----PVVCVY--VHDAAPKHGRA 54
Query: 79 LGFMLRGLRLLQRNIEETFQIL------FFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
+G R L ++ + L L +G + I F GA+++V + +
Sbjct: 55 MGGAQRWW--LHESLSKLDDALAAHGGSLILLRGNEHEAITGFAAAIGAAMVVWNRRYAK 112
Query: 133 EIRRCKDKICNRVSD-SVTIHEVDAHNVVPVWVASEK-----LEYSAKTLRGKINKLLP- 185
I + D + + + H + W + + +SA + + P
Sbjct: 113 AQTGTDASIKRDLIDRGIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPP 172
Query: 186 ------EYLIDYPMLEQPIEKWTGTRQ------SIDWDSIIAAVLRKGAEVPEIGWCESG 233
++ +P+ R+ + DW A LR+ + G
Sbjct: 173 VPLPAPSHIRFFPVPAHATPHVCTLRELELQPSAPDW----AGGLRET--------WQCG 220
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS------AQRCA 287
E AA + L + FL L +YPT R+ P RA S LSPYL FG IS A A
Sbjct: 221 EQAASDQL----EAFLENSLSDYPTLRDFPAA-RATSRLSPYLRFGNISVRQVWYATLSA 275
Query: 288 LEARKARKLCPEAIDT-------FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLK 340
+A ++ ++ +D+ FL E I RE + + ++ + ++ +
Sbjct: 276 ADAMRSARIV-RGVDSKDGPLSKFLSE-IGWREFSYHLLYHFAPLHQVNFRRQFDSMPWR 333
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D A R +++ +T PL +A E+ + G MH +RM
Sbjct: 334 DDAKSLR-------KWQTGRTGYPLVDAGMRELWHTGWMHNRVRM 371
>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
Length = 476
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 104/456 (22%), Positives = 181/456 (39%), Gaps = 69/456 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P ++ K+ + +K E + ++K +T P +A E+ G MH
Sbjct: 287 HYPF-----TVYKPLNKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMH 339
Query: 381 GFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
RM + K +L W G A + D +D N +G W V
Sbjct: 340 NRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGS 387
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y++R V
Sbjct: 388 GADASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 477
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 118/485 (24%), Positives = 183/485 (37%), Gaps = 74/485 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---------GAKARQLGF 81
V++W RD R+ DN + AV+ + P + D L A AR L F
Sbjct: 6 VLFWHRRDLRLADNLGIQAAVEIS-----PAVTGVYVLDPALIQPPQSLPPMAPAR-LWF 59
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI 141
+L L LQ+ L L +G+ +P GA +V + R ++
Sbjct: 60 LLESLIELQQRWRAAGSRLLIL-EGDPVQVLPPLAERLGAEAVVWNRDVEPYSRERDRQV 118
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY---PMLEQPI 198
R+ + D VV W KT G ++ +L ++ +QPI
Sbjct: 119 AKRL-------QADGRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPI 171
Query: 199 --EKWTG-----TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
E +G + D D + A + R G + EI C GE AA+E L DG L+
Sbjct: 172 TIEAPSGLVDLHSDLVPDRDPLAALLHRHGFQGTEICPCRPGESAALEQLTLFADGPLS- 230
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLE 306
Y DRN P S LS L G +S ++ A++ R AI + +
Sbjct: 231 ---GYEPDRNFP-SVVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQ 286
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
EL RE F+ P +W R +++ E ++ + + T P+
Sbjct: 287 EL-GWREFYQQALFHFPELADGPYREQWRRFPWENN-----EAWFSS--WREGMTGMPII 338
Query: 367 NASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A+ ++ +G MH RM A I +W G E A + E+DG
Sbjct: 339 DAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWG-ERAFM-------ELEVDGDLAAN 390
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADS 481
G WS G +P +R N + KFD DG Y++R V +
Sbjct: 391 NGGWQWSASS----GMDPKP----LRIFNPATQATKFDADG--EYIRRWVPELRHVNTKD 440
Query: 482 LVSGK 486
L++G+
Sbjct: 441 LLTGE 445
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 113/508 (22%), Positives = 190/508 (37%), Gaps = 119/508 (23%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLR 84
P+++W RD R+ DN L A Q+ + + F L Q L A AR + ++
Sbjct: 3 APILFWHRRDLRLSDNIGLAAARAQSAQ----LIGLFCLDPQILQSADMAPAR-VAYLQG 57
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSP------------ 130
L+ LQ+ ++ L L QG+ + IP ++ A + D P
Sbjct: 58 CLQELQQRYQQAGSRLLLL-QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAA 116
Query: 131 -----LREIR------RCKDKICNRVSDSVTIHEVDAHN------VVPVWVASEKLEYSA 173
+R ++ D+I + + +++ N PV +E ++ S
Sbjct: 117 LKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSP 176
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+ L + P L + P L+Q DWD E G
Sbjct: 177 EQL----TAIAPLLLSELPTLKQ---------LGFDWDGGFP--------------VEPG 209
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA+ L+ F + + +Y RN P + SGLSP L FG I ++ A A
Sbjct: 210 ETAAIARLQE----FCDRAIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWRAASAA 264
Query: 294 RKL-----CPEAIDTFLEELIVRRELADNFCFYQPN-----YDSLKGAWEWARKSLKDHA 343
L +I + +EL RE + ++ P+ Y SL + W
Sbjct: 265 HALSRSDEARNSIRVWQQEL-AWREFYQHALYHFPSLADGPYRSLWQQFPW--------- 314
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGP 398
+ RE ++T + +AQT P+ +A+ ++ G MH M A I++W G
Sbjct: 315 -ENREALFTA--WTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGE 371
Query: 399 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF 458
+ + ++ +DG G WS G +P +R N + +KF
Sbjct: 372 QFFM--------QHLVDGDLAANNGGWQWSASS----GMDPKP----LRIFNPASQAKKF 415
Query: 459 DVDGYIAYVKRIVGGTKKRRADSLVSGK 486
D Y+KR + + L+SG+
Sbjct: 416 DATA--TYIKRWLPELRHVHPKDLISGE 441
>gi|359764981|ref|ZP_09268820.1| deoxyribodipyrimidine photo-lyase [Gordonia polyisoprenivorans NBRC
16320]
gi|359317488|dbj|GAB21653.1| deoxyribodipyrimidine photo-lyase [Gordonia polyisoprenivorans NBRC
16320]
Length = 429
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 103/418 (24%), Positives = 156/418 (37%), Gaps = 74/418 (17%)
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPL 131
A R+L F++ LR ++E + +G ++ IP V GAS + DFSP
Sbjct: 37 AGDRRLAFLVDSLR----ELDERLDGRLLVVRGRPDEEIPRLVDAVGASTVHVSEDFSPF 92
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R D+V DA +V V S L + + + Y +
Sbjct: 93 ----------GRRRDDAVVAALDDAGDVSWEPVGSPYLVSPGRVTKSDGSP----YKVFT 138
Query: 192 PMLEQPIEK-W-TGTRQSIDWDSII--AAVLRKG----AEVPEIGWCESGEDAAMEVLKG 243
P Q + W T S+ D ++ + + R G + P +GE+AA+
Sbjct: 139 PFFRQWRDHGWRTPASTSVTADDLVDPSDLTRSGRIRIPKAPTTTDIPAGENAALARWGE 198
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT 303
F+ + L Y DRN P S +S YL FG I + A + K
Sbjct: 199 ----FVAEDLAGYDDDRNRP-DLDVTSRMSAYLKFGNIHPRTLAADLTGTGK----GAQA 249
Query: 304 FLEELIVRRELADNFCFYQPNYDSLKGAWE-WARK----SLKDHASDKREHIYTKEQFEK 358
+L EL R AD + + AW W R+ L A+ R + +++
Sbjct: 250 YLRELAFRDFYADVLHHWP------ESAWHNWNRQFDDIDLDTDAAAGRRF----DAWKQ 299
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYE 413
+T PL +A ++ G MH +RM A + L W G A + D+
Sbjct: 300 GRTGFPLVDAGMRQLAQTGYMHNRVRMVTASFLVKDLHLPWWWG-------ARWFLDQL- 351
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+DG + G W+ D P F R N +KFD DG AYV + V
Sbjct: 352 LDGDMASNQHGWQWAAGTGTDAA----PYF---RVFNPEAQAKKFDPDG--AYVAQWV 400
>gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisB18]
gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB18]
Length = 483
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 147/391 (37%), Gaps = 56/391 (14%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLRGL 86
+ W D R+ D+ A+D A ++ V + L ++ G R LG ++ + L
Sbjct: 10 LVWFRDDLRLSDH----PALDDAGRSGAAVVCLYVLDEESAGL--RPLGGAARWWLAQSL 63
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
R L ++ +L L +G A + RE GA + + P R R D + R+
Sbjct: 64 RSLSADLAARGGVLI-LRRGPAARIVAEVAREAGAVRVSWNDVPNRPARAVADDLAARLG 122
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
D + +++ + +T +G+ ++ + L P + T +
Sbjct: 123 DLGVAAQCCPGDLL-------AAPATVRTQQGRGLRVFTPFWKRVLALGDPPQPLTAPKA 175
Query: 207 SIDWDSIIAAVLRKGAEVP-EIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
S+ + L P W + GE AA L+ FL + Y T
Sbjct: 176 LCSVPSLASDTLDDWKLEPTRPDWAGGLRARWQPGEAAAQRGLQH----FLHGAIAGYAT 231
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKLCPEAIDTFLEEL----IVR 311
+R+ P + A S LSP+L FG+IS ++ AR R +D FL EL R
Sbjct: 232 ERDRPDR-VATSTLSPHLRFGEISPRQVWHAARFAAAERPAIAADVDKFLSELGWREFCR 290
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
L DN N + W + A +++ +T PL +A
Sbjct: 291 HLLFDNPDLATRNLQPAFDRFPWTTDPIALRA------------WQRGRTGYPLVDAGMR 338
Query: 372 EMVYNGKMHGFMRMYWAK-----KILEWTTG 397
E+ G MH +RM A +L+W G
Sbjct: 339 ELRLTGVMHNRVRMVAASFLVKHLLLDWRCG 369
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 117/506 (23%), Positives = 194/506 (38%), Gaps = 102/506 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+++W RD R+ DN L A +++K + N+ + A AR + +ML L
Sbjct: 5 IIFWHRRDLRLSDNIGLSKAYQKSSKLVGLFCLDPNILQRDDIAPAR-VNYMLGCL---- 59
Query: 91 RNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRRCK------- 138
RN++E++Q L +FQG+ IP + + ++ D P + R +
Sbjct: 60 RNLQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKEALQE 119
Query: 139 ---------DKICNRVSDSVTIHEVDAHNV-VPVWVA---------SEKLEYSAKTLRGK 179
D++ + + +T D + V P W + +E +E +
Sbjct: 120 KGITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDSLSDEE 179
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
IN + LID P A L G ++P + E GE AA E
Sbjct: 180 INTVKNIGLIDLPT---------------------AKDLGYGWDIPLL--LELGETAAKE 216
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALEARKARKL 296
L F + +Y RN P S LSP FG I + + +EA + +
Sbjct: 217 QLH----YFCNSTIYSYQEQRNFP-AIDGTSKLSPAFKFGVIGIREVWQTTIEAYENTRS 271
Query: 297 --CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
E I T+ +E I RE + ++ P + +G + R+ +D D E + +
Sbjct: 272 DEARENIQTWQQE-IAWREFYQHCLYFFP--ELAEGPY---REEFQDFPWDNNEDHF--Q 323
Query: 355 QFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKY-- 412
+ + +T P+ +A+ ++ G MH RM A + + L I +KY
Sbjct: 324 AWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT-------KDLMINWQWGEKYFM 376
Query: 413 --EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
IDG G WS G +P +R N + +K+D DG Y++
Sbjct: 377 QKLIDGDLSANNGGWQWSASS----GMDPKP----LRIFNPASQAQKYDPDG--EYIRLW 426
Query: 471 VGGTKKRRADSLVSGK----EKELCG 492
V + LV+GK E CG
Sbjct: 427 VPEISSLDTEYLVTGKIPPLEAHSCG 452
>gi|387906116|ref|YP_006336453.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
gi|387581008|gb|AFJ89722.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
Length = 505
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/404 (22%), Positives = 151/404 (37%), Gaps = 70/404 (17%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+ + L + PVV W DQR+ DN AL HA+D + PV + R
Sbjct: 1 MTRSDLPHEARPVVVWFRDDQRLADNPALTHALDTGH----PVVCVY--VHDAAPKHGRA 54
Query: 79 LGFMLRGLRLLQRNIEETFQIL------FFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
+G R L ++ + L L +G + I F GA+++V + +
Sbjct: 55 MGGAQRWW--LHESLSKLDDALAAHGGSLILLRGNEHEAITGFASAIGAAMVVWNRRYAK 112
Query: 133 EIRRCKDKICNRVSD-SVTIHEVDAHNVVPVWVASEK-----LEYSAKTLRGKINKLLP- 185
I + D + + + H + W + + +SA + + P
Sbjct: 113 AQTGTDASIKRDLIDRGIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPP 172
Query: 186 ------EYLIDYPMLEQPIEKWTGTRQ------SIDWDSIIAAVLRKGAEVPEIGWCESG 233
++ +P+ R+ + DW A LR+ + G
Sbjct: 173 VPLPAPSHIRFFPVPAHATPHVCTLRELELQPSAPDW----AGGLRET--------WQCG 220
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALEA 290
E AA + L + FL L +YPT R+ P RA S LSPYL FG IS ++ L A
Sbjct: 221 EQAASDQL----EAFLENSLSDYPTLRDFPAA-RATSRLSPYLRFGNISVRQVWYATLSA 275
Query: 291 RKARKLCPEA---------IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
A + ++ FL E I RE + + ++ + ++ +D
Sbjct: 276 ADAMRSAHTVRGIDSKDGPLNKFLSE-IGWREFSYHLLYHFAPLHQVNFRRQFDSMPWRD 334
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A R +++ +T PL +A E+ + G MH +RM
Sbjct: 335 DAKSLR-------KWQTGRTGYPLVDAGMRELWHTGWMHNRVRM 371
>gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1]
gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1]
Length = 476
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 147/388 (37%), Gaps = 61/388 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
P + W+ D R+ DN AL A + + P+ V + + D+ G R LG ++
Sbjct: 8 PSIVWLRNDLRLSDNPALTAATSE----DRPLVVVY-IHDE-TGDGIRPLGSASKWWLHH 61
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKIC 142
L L +++ L L G A +P V E GA+ + + ++ R+I
Sbjct: 62 SLTALDAALQKLGGQLT-LSHGPATQVLPALVDELGATSVHWNRRYTAARDIDAGLKASL 120
Query: 143 NRVSDSVTIHEVDAHN---------------VVPVWVASEKLEYSAKTLRGKINKLLPEY 187
+V H+ + N P W A+++ LR L +
Sbjct: 121 REQGLTVESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVR-DALRAPTTTTL-RW 178
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
L P + I +W DW A LR+ W GE A L +
Sbjct: 179 LAGSPASDD-IAEWNLLPTRPDW----AEGLRET-------WT-PGEQGARNRL----ES 221
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-CPEA----ID 302
F+T+RL +Y R + A SGLSP+L FG+IS + R P +
Sbjct: 222 FVTERLADY--HRRDEPAVDATSGLSPHLRFGEISPTQIWQRLRGTGSTDVPNPARNNVA 279
Query: 303 TFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
FL E I RE + F P +Y A+ W + D+ + E +
Sbjct: 280 KFLSE-IGWREFSTALLFDNPRLATDSYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWR 338
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ +T PL +A E+ + G MH +RM
Sbjct: 339 RGRTGIPLVDAGMRELWHTGTMHNRVRM 366
>gi|434376106|ref|YP_006610750.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874663|gb|AFQ26830.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 105/457 (22%), Positives = 181/457 (39%), Gaps = 71/457 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V + FL +A + ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQD---EDFLMGEASKW-WLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYH 287
Query: 322 QPN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
P Y L K+ + +K E + ++K +T P +A E+ G M
Sbjct: 288 YPFTVYKPL-------NKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFM 338
Query: 380 HGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
H RM + K +L W G A + D +D N +G W V
Sbjct: 339 HNRTRMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAG 386
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y+++ V
Sbjct: 387 SGADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|385872663|gb|AFI91183.1| Deoxyribodipyrimidine photolyase [Pectobacterium sp. SCC3193]
Length = 492
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 165/389 (42%), Gaps = 63/389 (16%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
V W+ D RV DN AL A N + V +A + Q F+L L L+Q+
Sbjct: 9 VVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLDNLTLVQQ 68
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREI-RRCKDK-ICNRVSD 147
+ E L + + ++ V+ C A TD ++ EI R +DK + +R++D
Sbjct: 69 ALAEKGIPLHYHECADFAASVDWLVQFC-AQQQATDLFYNHQYEINERLRDKQVKDRLTD 127
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-------LIDYPMLEQPIEK 200
SV H ++P S T G++ K+ + L++ + P
Sbjct: 128 SVVCHGYHDSLLLP--------PGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVPAPD 179
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
G + I+ EV + GE AA++ L+ F +++++Y R
Sbjct: 180 VRG--EPINNTVTFVPFSYPRVEVNNDDF-PCGERAALQQLRR----FCREQVQDYDQQR 232
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR-- 311
+ P +P S LSPYL G +S ++C + R CPE ++ T+ EL+ R
Sbjct: 233 DFPAQP-GTSKLSPYLALGIVSPRQC---FNRLRTECPEMLERREGGAFTWFNELVWREF 288
Query: 312 -RELADNF---CFYQPNYDSLKGAW-EWA--RKSLKDHASDKREHIYTKEQFEKAQTADP 364
R L ++ C ++P AW +W R+S +D A+ +++ +T P
Sbjct: 289 YRHLIVSWPLLCKHRP-----FTAWTQWVKWRESPEDLAA-----------WQQGKTGYP 332
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILE 393
+ +A+ ++ G MH +RM A +++
Sbjct: 333 IVDAAMRQLNETGWMHNRLRMICASFLVK 361
>gi|376286643|ref|YP_005159209.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae BH8]
gi|371583977|gb|AEX47642.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae BH8]
Length = 446
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 107/279 (38%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|209543430|ref|YP_002275659.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
Length = 463
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 147/382 (38%), Gaps = 68/382 (17%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL-GAKARQLGFMLRGLR 87
P + W D R+ DN AL+ +A K P L D L GA AR + L G
Sbjct: 7 APTIVWFREDFRIADNMALL----EAEKRGQPTLCIVILDDAHLPGAAAR---WWLHGA- 58
Query: 88 LLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTD--FSP--------LREI 134
R+++ET + + +F+G A + VR+ GA + + + P ++
Sbjct: 59 --IRSLDETLRGMGGALHVFRGAARAVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKAD 116
Query: 135 RRCKDKICNRVSDSVTIHE---VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + + R +HE V + P + + + PE L+
Sbjct: 117 LRAR-GLTVRSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFA 175
Query: 192 PMLEQPIEKWTGTRQS------IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
P P T Q DW + + G E E+G D + L+
Sbjct: 176 PPPPMPDSLITRHEQDGLLPRHPDWAGGLRDMWSPGEE-------EAG-DQLSDFLRHDG 227
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
G+ T R ++P D A S LSP+L FG +S + A RK CP D FL
Sbjct: 228 AGYATAR--DFPGDE-------ATSRLSPFLRFGHVSPAQVWHAA--TRKACP---DKFL 273
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH--ASDKREHIYTKEQFEKAQTAD 363
EL R+ A + F+ P+ A ++L+ A R +++ QT
Sbjct: 274 MEL-GWRDFAWSLLFFNPDL---------ATRNLRPEFDAMPWRHDPGGLAAWQRGQTGY 323
Query: 364 PLWNASQMEMVYNGKMHGFMRM 385
PL +A E+ + G MH +RM
Sbjct: 324 PLVDAGMRELWHTGWMHNRVRM 345
>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559511|ref|YP_006602235.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
gi|423359850|ref|ZP_17337353.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083011|gb|EJP91275.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|401788163|gb|AFQ14202.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
Length = 476
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 103/455 (22%), Positives = 181/455 (39%), Gaps = 67/455 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V + FL +A + ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQD---EDFLMGEASKW-WLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS-VTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYH 287
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P ++ K+ + +K E + ++K +T P +A E+ G MH
Sbjct: 288 YPF-----TVYKPLNKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHN 340
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM + K +L W G A + D +D N +G W V G
Sbjct: 341 RTRMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSG 388
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y+++ V
Sbjct: 389 ADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|374851431|dbj|BAL54391.1| deoxyribodipyrimidine photo-lyase [uncultured gamma
proteobacterium]
Length = 491
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 38/176 (21%)
Query: 224 VPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P IGW GE A+ L+ + G L + Y + R+ P P A S LSP+L
Sbjct: 192 MPRIGWYRGLAQTWRPGEAGALARLEAFRSGPLAE----YASLRDRPDLP-ATSRLSPHL 246
Query: 277 HFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWAR 336
HFG+IS ++ A + + + FL ELI RE + + ++ P
Sbjct: 247 HFGEISPKQVAASILASG----HSGEAFLRELIW-REFSHHLLYHFPK------------ 289
Query: 337 KSLKDHASDKREHIY-------TKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
L D+R H + +++ QT PL +A E+ G MH +RM
Sbjct: 290 --LPGQPLDQRFHAFPWRVAKDALAAWQQGQTGIPLVDAGMRELWATGWMHNRIRM 343
>gi|376250251|ref|YP_005137132.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC03]
gi|372111755|gb|AEX77814.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC03]
Length = 446
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 107/279 (38%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGAAAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|419859751|ref|ZP_14382401.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae bv. intermedius str. NCTC
5011]
gi|387983794|gb|EIK57249.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae bv. intermedius str. NCTC
5011]
Length = 446
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 107/279 (38%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
Length = 486
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 102/251 (40%), Gaps = 46/251 (18%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALE 289
GEDAA +L+ F+ RL Y T+R+ P + S LSPY+ FG +S + + A++
Sbjct: 215 GEDAAHSLLRA----FVDSRLGGYATERDRP-GIASTSRLSPYVRFGNLSVRQIWQAAVD 269
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-NYDSLKGAWEWARKSLKDHASDK-- 346
A R +D FL EL R FC+ Q + L R++L+ H D
Sbjct: 270 AHAHRAATQADLDKFLSELGWR-----EFCWAQLYRFPDLP------RRNLR-HTLDGMP 317
Query: 347 -REHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEE 400
R+ + + T P +A E+ G MH RM A +++W G E
Sbjct: 318 WRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREG--E 375
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 460
A ++ + + GC G P F R N +KFD
Sbjct: 376 AWFWDTLVDADAASNAANWQWVAGC----------GADAAPYF---RIFNPVAQGKKFDP 422
Query: 461 DGYIAYVKRIV 471
DG AYV+R V
Sbjct: 423 DG--AYVRRWV 431
>gi|343503903|ref|ZP_08741705.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
gi|342813488|gb|EGU48457.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
Length = 471
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/449 (21%), Positives = 166/449 (36%), Gaps = 59/449 (13%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W RD RV DN AL A+D + V + VA + A Q + R L LQ ++
Sbjct: 5 WFRRDLRVEDNTALQSAID-TQQPVVALYVATPATWRQHHLSAIQADLIYRRLSELQSDL 63
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
+ L ++ + N+ + A V DF+ I R V++ + +
Sbjct: 64 AQLNIPLLYV-------EVDNYQQSGQA---VMDFAQTHGIERLVFNREYEVNEQIRDSD 113
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
V++ V V +K ++ ++ NK + + P + + R I
Sbjct: 114 VESRAVFSVQGFDDKCLFAPGSV---FNKQGSYFKVFTPFKRAYLSRLASQRVDI---VK 167
Query: 214 IAAVLRKGAEV----------PEIGWCESGEDAAMEVLKGSK-----DGFLTKRLKNYPT 258
AA + E+ P + + + V++ F R+ +Y
Sbjct: 168 TAAATKMAEEIIANFSLATFSPNSVFSYPRQSSGQYVVRSHDIRQQLRDFCHDRVSHYHA 227
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
+R+ P A S LSPYL G +S ++C A + +A +V R+ +
Sbjct: 228 ERDKP-SLNATSQLSPYLAIGALSVRQCIARVLFATNVHLDAGREMWISELVWRDFYQHL 286
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
++P + W K H S ++H+ ++K +T P+ +A+ ++ G
Sbjct: 287 LHFEPKLCKGRNFVAWTEKV---HWSGDKKHLVA---WQKGETGYPIVDAAMRQLNKTGW 340
Query: 379 MHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
MH +RM A + L W G E Y K +DG G WS
Sbjct: 341 MHNRLRMVVASFLTKDLHLHWRHGEE-------YFMQKL-VDGDYAANNGGWQWSAST-- 390
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G +P F R N + +FD DG
Sbjct: 391 --GCDGQPYF---RIFNPTAQGERFDPDG 414
>gi|376247446|ref|YP_005139390.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC04]
gi|372114014|gb|AEX80072.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC04]
Length = 446
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 107/279 (38%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
Length = 473
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 115/467 (24%), Positives = 185/467 (39%), Gaps = 81/467 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD-QFLGAKARQLGFMLRGLRLLQ 90
V W +D R+ DN AL A+ +N+ + V F+L D QFL F ++
Sbjct: 5 VMWFRKDLRLEDNTALTEALVSLQENDHLLCV-FHLNDKQFLPEAPSHDYFFSAVAHFIK 63
Query: 91 RNIEETFQILFFLFQG---EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
++ I L G EA D + F S L +F R R +D + +
Sbjct: 64 AAKKQNLTI--HLLTGTLTEAFDQL--FACYPEWSQLYFNFDN-RGFGRKRDLYIKELVE 118
Query: 148 --SVTIHEVDAHNV-VPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+T+H + H++ P V E G K Y + L +P+ +
Sbjct: 119 KKGITVHSFEDHHLHQPTEVTKED---------GTYYKKFTPYYKKWIQLPKPVYQ---- 165
Query: 205 RQSIDWDSII-----------AAVLRKGAEVPEIGWCE-SGEDAAMEVLKGSKDGFLTKR 252
+Q++D++ + A+L K E + + GED A + L+ F+ KR
Sbjct: 166 KQALDFEKSVHFDDAPHFKAGTALLAKLLENRKTDFSTIVGEDYAHKQLQA----FVQKR 221
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L Y DR+ P + S LSP+L FGQIS ++ + +A TFL+EL R
Sbjct: 222 LAAYEKDRDIP-SIKGTSRLSPFLSFGQISIRKVWAACQGMPSSTGKA--TFLKEL-AWR 277
Query: 313 ELADNFCFYQP---NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
+ F P NY+ ++ K D R++ +++ QT P+ +A+
Sbjct: 278 DFYHMIYFSHPEQKNYELIE----------KYRNMDWRKNEEELTKWQAGQTGYPIIDAA 327
Query: 370 QMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
++ G MH +RM A +++W G E A + ID + G
Sbjct: 328 MRQLNQTGWMHNRLRMIVASFLTKDLLIDWRQG-EAYFARQL-------IDYDAASNIGG 379
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W+ G P F R N +KFD DG ++K+ V
Sbjct: 380 WQWAAST----GTDAVPYF---RIFNPITQGKKFDKDG--TFIKQFV 417
>gi|376253206|ref|YP_005141665.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae PW8]
gi|372116290|gb|AEX68760.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae PW8]
Length = 446
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 107/279 (38%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163]
gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163]
Length = 492
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 164/386 (42%), Gaps = 57/386 (14%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
V W+ D RV DN AL A N + V +A + Q F+L L L+Q+
Sbjct: 9 VVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLDNLTLVQQ 68
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREI-RRCKDK-ICNRVSD 147
+ E L + + ++ V+ C A TD ++ EI R +DK + +R++D
Sbjct: 69 ALAEKGIPLHYHECADFAASVDWLVQFC-AQQQATDLFYNHQYEINERLRDKQVKDRLTD 127
Query: 148 SVTIHEVDAHNVVP---VWVASEKLEYSAKTLRGK-INKLLPEYLIDYPMLEQPIEKWTG 203
SV H ++P V + ++ R I +LL + P + E
Sbjct: 128 SVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVPAPDVRGEPINN 187
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
T + + V + P GE AA++ L+ F +++++Y R+ P
Sbjct: 188 TVAFVPFSYPRVEV--NNDDFP------CGERAALQQLRR----FCREQVQDYDQQRDFP 235
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR---RE 313
+P S LSPYL G +S ++C + R CPE ++ T+ EL+ R R
Sbjct: 236 AQP-GTSKLSPYLALGIVSPRQC---FNRLRTECPEMLERREGGAFTWFNELVWREFYRH 291
Query: 314 LADNF---CFYQPNYDSLKGAW-EWA--RKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
L ++ C ++P AW +W R+S +D A+ +++ +T P+ +
Sbjct: 292 LIVSWPLLCKHRP-----FTAWTQWVKWRESPEDLAA-----------WQQGKTGYPIVD 335
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILE 393
A+ ++ G MH +RM A +++
Sbjct: 336 AAMRQLNETGWMHNRLRMICASFLVK 361
>gi|376256094|ref|YP_005143985.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae VA01]
gi|372118611|gb|AEX82345.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae VA01]
Length = 446
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 107/279 (38%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGAAAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|349701797|ref|ZP_08903426.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter europaeus LMG
18494]
Length = 466
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 41/183 (22%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE AA L D F+ +R+ Y T R P +P A SGLSPYL FG +S ++
Sbjct: 206 QPGEAAAHARL----DAFVAERVHGYATQRELPAQP-ATSGLSPYLRFGHVSPRQV---W 257
Query: 291 RKARKLCPEAIDT--FLEELIVRRELADNFCF---------YQPNYDSLKGAWEWARKSL 339
L P D+ FL E + R+ A F +P YD++
Sbjct: 258 HAVETLGPGDQDSACFLSE-VGWRDFAHATLFDFPGMGTGNLRPEYDNMP---------- 306
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEW 394
R ++K +T P+ +A E+ + G MH +RM A +L+W
Sbjct: 307 ------WRHDPVALRAWQKGKTGYPIIDAGMRELWHTGWMHNRVRMVVASFLTKHLLLDW 360
Query: 395 TTG 397
G
Sbjct: 361 RVG 363
>gi|456354652|dbj|BAM89097.1| deoxyribodipyrimidine photo-lyase type I [Agromonas oligotrophica
S58]
Length = 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 44/252 (17%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++GE AA E L FL +++Y DR+ P A S +SP+L FG+IS ++ A
Sbjct: 161 QAGERAAQERL----GKFLETAVRSYAADRDRP-DIDATSRMSPHLRFGEISPRQIWHAA 215
Query: 291 RKARKLCP---EAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDH 342
R A + P I+ FL EL R E + + + P N + A+ WA+
Sbjct: 216 RFAAEEHPAFARGIEKFLSELGWR-EFSRHLLYNNPDLATRNLQASFDAFPWAQNDAALQ 274
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEAL 402
A +++ +T P+ +A E+ + G MH +RM A ++ + L
Sbjct: 275 A------------WQRGRTGYPIVDAGMRELWHTGSMHNRVRMVAASLLV-------KHL 315
Query: 403 AIAIYLNDKYEIDG---RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
I L +++ D DP + G G P F R N KFD
Sbjct: 316 LIDWRLGEQWFWDTLVDADPGSNPASWQWVAG---SGADAAPYF---RVFNPVLQGEKFD 369
Query: 460 VDGYIAYVKRIV 471
+G YV+R V
Sbjct: 370 SNG--TYVRRWV 379
>gi|332853990|ref|ZP_08435106.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150]
gi|332869730|ref|ZP_08438918.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113]
gi|332728272|gb|EGJ59654.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150]
gi|332732632|gb|EGJ63865.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113]
Length = 480
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 102/461 (22%), Positives = 184/461 (39%), Gaps = 74/461 (16%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---CNRVSDSVT 150
L + + +E ++DFS I I N + T
Sbjct: 67 SALHIPLVI--------QVIPYWKEIAT--FISDFSKKYNIENVYANIEIGVNELKRDKT 116
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGK---------------INKL----LPE-YLID 190
+ + + +++ ++ + +++R + KL LP+ Y +
Sbjct: 117 VQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVP 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
E P++ G ++ID D I ++ + W GE A+E L D F+
Sbjct: 177 NKQNEVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIE 229
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLE 306
+ + +Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+
Sbjct: 230 QSVCHYKVERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLD 288
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
EL+ RE + F ++ + + + S K + EH+ ++ QT P+
Sbjct: 289 ELL-WREFYQHILF---DFPHVSKHIPFKKDSQKIKWNHNPEHLTA---WQTGQTGIPIV 341
Query: 367 NASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A +++ G MH +RM A +++W G + + ++ IDG
Sbjct: 342 DAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAAN 393
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G W C G P F R N +KFD++G
Sbjct: 394 NGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDLEG 427
>gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
[Acinetobacter baumannii ATCC 17978]
Length = 480
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 108/466 (23%), Positives = 186/466 (39%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + +GF LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-IGFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKVERDFP-NIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQMGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPITQSKKFDPEG--EYIRQWV 434
>gi|167619333|ref|ZP_02387964.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4]
Length = 311
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 102/251 (40%), Gaps = 46/251 (18%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALE 289
GEDAA +L+ F+ RL Y T+R+ P + S LSPY+ FG +S + + A++
Sbjct: 40 GEDAAHSLLRA----FVDSRLGGYATERDRP-GIASTSRLSPYVRFGNLSVRQIWQAAVD 94
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-NYDSLKGAWEWARKSLKDHASDK-- 346
A R +D FL EL R FC+ Q + L R++L+ H D
Sbjct: 95 AHAHRAATQADLDKFLSELGWR-----EFCWAQLYRFPDLP------RRNLR-HTLDGMP 142
Query: 347 -REHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEE 400
R+ + + T P +A E+ G MH RM A +++W G E
Sbjct: 143 WRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREG--E 200
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 460
A ++ + + GC G P F R N +KFD
Sbjct: 201 AWFWDTLVDADAASNAANWQWVAGC----------GADAAPYF---RIFNPVAQGKKFDP 247
Query: 461 DGYIAYVKRIV 471
DG AYV+R V
Sbjct: 248 DG--AYVRRWV 256
>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
Length = 476
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 102/452 (22%), Positives = 179/452 (39%), Gaps = 61/452 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G ++ I + + + G + + + E + K+ + D + E +
Sbjct: 65 GSTLI-IRKGNTQEEILSLIEQLGITAVYWNICYDPERLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K + +S+ A
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISKVQRIKGG---NSLPA 174
Query: 216 AV-LRKGAEVPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALSG 271
++ + K +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 175 SLSVSKLHLLPTIPWTSHIESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFP-NENAHSM 233
Query: 272 LSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN-- 324
L+PYL FGQIS + L + + C + +++F+ + I RE + ++ P
Sbjct: 234 LAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQFI-WREFSYYLLYHYPFTV 292
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
Y L KS + + E + T ++K T P +A E+ G MH R
Sbjct: 293 YKPL-------NKSFEHFPWNNEEELLTV--WQKGDTGYPFIDAGMRELWQTGFMHNRAR 343
Query: 385 M----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
M + K +L W G A + D +D N +G W V G
Sbjct: 344 MAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADA 391
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD DG Y+++ V
Sbjct: 392 SPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
clavatus NRRL 1]
gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
clavatus NRRL 1]
Length = 586
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 105/442 (23%), Positives = 176/442 (39%), Gaps = 78/442 (17%)
Query: 2 ASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPV 61
+L P A Q Q + K VV+W D R+ DN AL A A ++N+P+
Sbjct: 66 GTLERPIEARQKAYEETQNQRKVIKPNNAVVHWFKSDLRLHDNRALQMAYQTAKEHNIPL 125
Query: 62 AVAFNLFDQFLGA---KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----N 114
+ L Q L A ++ LR L L+R++ E I ++ E +IP +
Sbjct: 126 IGLYILSPQDLTAHLSSPARVDLTLRTLDQLKRDLNE-LDIPLYMETQETRKDIPQRIID 184
Query: 115 FVRECGASLLVTDFS-PLREIRRCKDKICNRVSDSVTIHEV-DAHNVVPVWVASEKLE-- 170
+E G + + + + E+RR + + + DA V P VAS++ +
Sbjct: 185 LCQEWGVNNIFANLEYEVDELRREAKLVRMCAQNGIKFETAHDACVVTPGAVASQQGKQY 244
Query: 171 ------YSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID--WDSIIAAVLRKGA 222
Y A + + N P+ L + E+P R+ ++S + A
Sbjct: 245 AVYSPWYRAWLVHLREN---PDCL---ELSEEPGSNPGNARKHFAKLFESEVPAAPENKR 298
Query: 223 EVPE----IGWC-ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLH 277
E G +GE A++ L + F+ +R+K+Y D N + + S LSPY
Sbjct: 299 LSDEQRKYFGQLYPAGEHEALDRL----EKFVEERVKDY-ADARNMMFGQTTSILSPYFA 353
Query: 278 FGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD--------------NFCFYQP 323
G +SA+ + ARKA K + D L I D N CF +P
Sbjct: 354 SGSLSARTAVVHARKANKGSLDRGDPGLASWISEVAWRDFYKHVLVHWPFICMNKCF-KP 412
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMH 380
+ +L+ WE Y + +F + +T P+ +A+ +M ++ MH
Sbjct: 413 EFTNLE--WE-----------------YDENKFAAWCEGKTGFPIVDAAMRQMKHDAWMH 453
Query: 381 GFMRM----YWAKKIL-EWTTG 397
RM + +K +L +W G
Sbjct: 454 NRARMIVASFLSKDLLIDWRRG 475
>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
Length = 476
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 180/455 (39%), Gaps = 67/455 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDEAFS--MGEASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEAILSLIEKLDITAVYWNICYDPDRLKSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +P+ K QSI W S +
Sbjct: 124 SHLLLESWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPVSK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYH 287
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P ++ K+ + +K E + ++K +T P +A E+ G MH
Sbjct: 288 YPF-----AVYKPLNKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHN 340
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM + K +L W G A + D +D N +G W V G
Sbjct: 341 RTRMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNIMGWQW----VAGSG 388
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y+++ V
Sbjct: 389 ADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/379 (22%), Positives = 136/379 (35%), Gaps = 58/379 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W RD R+ DN AL +A + + +PV + A Q ++ L L
Sbjct: 8 PVILWFRRDLRLDDNQAL-NAAHLSGRPIIPVYINEPAAAGTGPLGAAQAWWLHHSLEAL 66
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP----------------L 131
R++ E Q L G+A + + +++ GA + + + P
Sbjct: 67 DRSLHER-QGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQA 125
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
E R ++ + S +T + P W A E + L L
Sbjct: 126 IEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLAS---QR 182
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P E ++ W DW A + W GE A E L F+
Sbjct: 183 PASET-LKSWKLLPTKPDWAKGFADL-----------WT-PGEQGARERLSA----FVED 225
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
LK Y +R+ P KP A S LSP+L G+IS R R P A + I
Sbjct: 226 ELKGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSNRVPAADIVHFRKEIAW 284
Query: 312 RELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
RE + + F+ P N++ ++W R E + + T P+
Sbjct: 285 REFSYHLLFHFPRLASENWNDRFDGFKW------------RNDDGDFEAWRRGMTGYPIV 332
Query: 367 NASQMEMVYNGKMHGFMRM 385
+A ++ +G MH +RM
Sbjct: 333 DAGMRQLWRHGWMHNRVRM 351
>gi|167581248|ref|ZP_02374122.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH]
Length = 311
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 102/251 (40%), Gaps = 46/251 (18%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALE 289
GEDAA +L+ F+ RL Y T+R+ P + S LSPY+ FG +S ++ A++
Sbjct: 40 GEDAAHSLLRA----FVDSRLGGYATERDRP-GIASTSRLSPYVRFGNLSVRQIWHAAVD 94
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-NYDSLKGAWEWARKSLKDHASDK-- 346
A R +D FL EL R FC+ Q + L R++L+ H D
Sbjct: 95 AHAHRAATQADLDKFLSELGWR-----EFCWAQLYRFPDLP------RRNLR-HTLDGMP 142
Query: 347 -REHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEE 400
R+ + + T P +A E+ G MH RM A +++W G E
Sbjct: 143 WRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREG--E 200
Query: 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 460
A ++ + + GC G P F R N +KFD
Sbjct: 201 AWFWDTLVDADAASNAANWQWVAGC----------GADAAPYF---RIFNPVAQGKKFDP 247
Query: 461 DGYIAYVKRIV 471
DG AYV+R V
Sbjct: 248 DG--AYVRRWV 256
>gi|423649036|ref|ZP_17624606.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
gi|401284534|gb|EJR90400.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
Length = 476
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 177/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPFSRVQSIKWGNSLP 173
Query: 216 AVLRKG--AEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS ++ DK E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 175/470 (37%), Gaps = 82/470 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++ W +D R+ D+ AL AVD+ + VP+ + A Q ++ L L
Sbjct: 19 LILWFRKDLRISDHAALATAVDEGFRI-VPLYIREPEHAGTGPLGAAQAWWLHHSLEALS 77
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP-------LREIRRCKDKI 141
+++ L L G A+ + + + E GAS + + + P + + D I
Sbjct: 78 ASLDALGASLV-LRSGAADAALSDLITETGASAVFWNRRYDPSGISVDKALKAKLIADGI 136
Query: 142 CNRVSDSVTIHE-------VDAHNVV--PVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R +HE H V P W K L G P I P
Sbjct: 137 EVRTFAGQILHEPTKLKTGAGGHFRVYTPFW----------KALDGSGE---PPEPIPAP 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
E W + + DWD + A+ E W + GED A + L F+
Sbjct: 184 KALPAPEHWPKSEKLSDWD--LLPTKPNWAKGFESEW-QPGEDGARKRLAD----FIASG 236
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-ARKLCPEAIDTFLEELIVR 311
LK Y T R+ P + +S LSP+L G+IS R + E F +EL V
Sbjct: 237 LKGYRTRRDFPGEAH-VSMLSPHLALGEISPASVWHATRGLSDSYSSEDYIHFRKEL-VW 294
Query: 312 RELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
R+ + + F+ P N+++ A+ W HA D E++ K QT P+
Sbjct: 295 RDFSYHLLFHFPDLATKNWNTKFDAFPW------RHAPD------LLEKWRKGQTGYPII 342
Query: 367 NASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A ++ G MH +RM A +++W G + D +D +
Sbjct: 343 DAGMRQLWQTGFMHNRVRMIVASFLIKDLLIDWREGER-------WFRDTL-VDADPASN 394
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W V G P F R N KFD +G AYV+R V
Sbjct: 395 AASWQW----VAGSGADAAPFF---RIFNPISQGEKFDPEG--AYVRRFV 435
>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
Length = 476
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 177/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPFSRVQSIKWGNSLP 173
Query: 216 AVLRKG--AEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS ++ DK E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|77362362|ref|YP_341936.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
TAC125]
gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
haloplanktis TAC125]
Length = 468
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 179/455 (39%), Gaps = 67/455 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR--QLGFMLRGLRL 88
++W RD R+ N ALI A++ N A+ F Q+ +A Q+ + R +
Sbjct: 3 TLFWFRRDLRLFSNEALIQALN----NGANHAIFFICEKQWQQHQAAPIQIDLLKRRITY 58
Query: 89 LQRNIEE---TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS-PLREIRRCKDKI--C 142
L + + + T I+ + + E + +F + ++ + L E+ R K + C
Sbjct: 59 LHQQLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAKC 118
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL-IDYPMLEQPIEKW 201
+ +S + T++E D + PV + K L +Y+ + + + + P+E
Sbjct: 119 DELSITFTLYEGDL--IAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHFSLPQWPVEHV 176
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+G Q S L KG E W + A V D F+ +L +Y R+
Sbjct: 177 SGGAQL----SKNETNLLKGDSSSE-KWPVDDKTLATVV-----DNFICDKLTSYDDHRD 226
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTF--LEELIVR---REL 314
P + SGLSPYL G IS ++ ++ R L TF + ELI R R L
Sbjct: 227 IP-SIKGTSGLSPYLALGIISTKQLLINIQQRYPDILSTSKSKTFTWVNELIWREFYRHL 285
Query: 315 ADNFCFYQ--PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
F N++ A W R S D + + + +T PL +A+ +
Sbjct: 286 IAQFPKLSRGDNFNEKYNAVVW-RSSDDDFKA-----------WCEGRTGYPLVDAAMRQ 333
Query: 373 MVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
++ G MH +RM A +++W G + ++ IDG + G W
Sbjct: 334 LLQTGWMHNRLRMVVASFLTKHLLIDWRKGERFFM--------QHLIDGDLASNNGGWQW 385
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ G +P F R N +FD +G
Sbjct: 386 AAS----TGCDAQPYF---RVFNPIRQSERFDPNG 413
>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
Length = 476
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 177/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPFSRVQSIKWGNSLP 173
Query: 216 AVLRKG--AEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS ++ DK E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|291454944|ref|ZP_06594334.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
gi|291357893|gb|EFE84795.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
Length = 457
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 33/218 (15%)
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
D+++ L A S LSP+LHFG +SA AR+ A F+ +L R
Sbjct: 220 DQHDDLAGDATSRLSPHLHFGTLSAAELVHRARRKEGAGATA---FVRQLCWRD------ 270
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
F+ + A ++ +DH R+ E + + +T P+ +A+ ++ + G
Sbjct: 271 -FHHQVLAARPDASHADYRAREDHWRTGRDAEQETEAWREGRTGYPIVDAAMRQLAHEGW 329
Query: 379 MHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
MH R+ A + ++W TG + L++ +DG N + W V
Sbjct: 330 MHNRGRLLAASFLSKTLYVDWRTGADHFLSLL--------VDGDIANNQMNWQW----VA 377
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G RP R +N ++D DG AYV+R V
Sbjct: 378 GTGTDTRP----HRVLNPVRQAHRYDPDG--AYVRRWV 409
>gi|386818429|ref|ZP_10105647.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
gi|386423005|gb|EIJ36840.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
Length = 476
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 108/474 (22%), Positives = 181/474 (38%), Gaps = 77/474 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLRG 85
+ W+ +D R+ DN AL HA K V + F D L +LG ++
Sbjct: 4 AIVWLRQDLRLADNPALYHAC----KTCANVILIF--IDDPLPGSVSRLGAASQVWLHHS 57
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKI 141
L+ L +++ L L QG A + + E GA+ + V D + L ++ K+ +
Sbjct: 58 LQALDASLQAAGNRLT-LRQGSALPVLQALLAETGATHVYWNRVYDPASLARDKQIKEIL 116
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-LEQPIEK 200
S T+H +A + W + K +L + P+ + I
Sbjct: 117 ----KQSCTVHSFNASLLNEPWEVLKADGTPYKVFTPFWKAMLKHGIQHLPLPAPEQIPA 172
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
T +S+ + + + R + + +GE AAM+ L FL +Y R
Sbjct: 173 PTSFPRSLALNEL-GLLPRTHWDTGMMAHWPAGETAAMQKLLD----FLPLGGADYKNAR 227
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA---IDTFLEELIVRRELADN 317
N P + + LSP+LHFG+IS ++ P A + F++E I RE A
Sbjct: 228 NFPAQ-HGTAQLSPHLHFGEISPRQAVYHTEAFLAEHPAAESGLRHFIQE-IGWREFAWY 285
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKR--------EHIYTKEQFEKAQTADPLWNAS 369
++ P+ D A D+R +++ E + + QT P+ +A
Sbjct: 286 LLYHFPH--------------TVDQALDERFKHFPWAEDYVENLEHWRRGQTGYPIIDAG 331
Query: 370 QMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
E+ G MH +RM A ++ W G + D +D + +G
Sbjct: 332 MRELWQTGWMHNRVRMIVASLLTKNLLIPWQEGEN-------WFRDTL-VDADLASNVLG 383
Query: 425 CMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
W+ CG P F R N +KFD +G Y++R V + R
Sbjct: 384 WQWTAGCGA-----DAAPYF---RIFNPILQSQKFDPEG--EYIRRWVPELRAR 427
>gi|421673232|ref|ZP_16113176.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC065]
gi|421689964|ref|ZP_16129637.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-116]
gi|404565468|gb|EKA70636.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-116]
gi|410387051|gb|EKP39511.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC065]
Length = 480
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 185/466 (39%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 S-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R++P + S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYNVERDSP-HIQGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKNTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|424863513|ref|ZP_18287426.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86A]
gi|400758134|gb|EJP72345.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86A]
Length = 472
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 34/238 (14%)
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL----CPEAID 302
+L K + Y DRN+P+ S LS YL G IS +RC LEA K + I
Sbjct: 216 SYLDKNIFKYAQDRNDPI-IDGTSRLSAYLASGIISPKRCILEALKLNNFELDSGEKGIV 274
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
+++E I+ RE N F P + E+ +K +K +D + + + T
Sbjct: 275 KWIDE-IIWREFYKNIMFSFPKVSRGQPFQEYTKK-IKWRFNDDELNAW-----KSGNTG 327
Query: 363 DPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGR 417
P+ +A+ +++ G MH +R M++ K +L +W G E ++ + + D
Sbjct: 328 FPIIDAAMKQLINEGWMHNRLRMVVAMFFTKNMLHDWRLGEE------FFMQNLIDGDFS 381
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
NG G WS D P F R N + FD +G ++K+ + K
Sbjct: 382 SNNG--GWQWSSSTGTDAA----PYF---RIFNPLTQSKNFDSNG--LFIKKYINELK 428
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 103/474 (21%), Positives = 167/474 (35%), Gaps = 89/474 (18%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W +D R+ DN AL A ++ + +P+ + A Q ++ L L
Sbjct: 8 PVILWFRKDLRLDDNQALT-AAHRSGRPIIPLYIREPAAAGTGPLGAAQAWWLHHSLEAL 66
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
R++++ L L GEA + + F++E A + + R D + D+
Sbjct: 67 NRSLQKLNGRLV-LASGEALEVLCAFIKESAAEAVFWN--------RRYDPAGISI-DAR 116
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL--------------PEYLIDYP--- 192
HE++ + + L ++ + G PE +D P
Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPAKL 176
Query: 193 -MLEQP----IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
+ QP + W DW + G E G + V
Sbjct: 177 RLASQPKSEVLGSWKLLPTKPDWAGDFVDLWTPG---------EEGAQQRLHV------- 220
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F+ L+ Y +R+ P +P A S LSP+L G+IS R R + P A E
Sbjct: 221 FVEDALEGYKENRDYPARP-ATSMLSPHLALGEISPARIWDATRGLSQRVPAADIVHFRE 279
Query: 308 LIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
I RE + + F+ P N++ +EW R + E + + T
Sbjct: 280 EIAWREFSYHLLFHFPRLASANWNDRFDGFEW------------RNNSGDFEAWRRGMTG 327
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGR 417
P+ +A ++ +G MH +RM A +++W G + D +D
Sbjct: 328 YPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRRG-------EAWFRDTL-VDAD 379
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
N W V G P F R N KFD DG YV+ V
Sbjct: 380 PANNAASWQW----VAGSGADASPFF---RIFNPVLQGEKFDPDG--DYVRTYV 424
>gi|372281898|ref|ZP_09517934.1| deoxyribodipyrimidine photo-lyase [Oceanicola sp. S124]
Length = 472
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 145/386 (37%), Gaps = 47/386 (12%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P + W+ RD R D+ AL A K PV F D G A + GL
Sbjct: 4 PCLLWIRRDLRTTDHEALAAAC----KRGGPVIPVFIRDDSVTGLGAAPALRLDLGLAAF 59
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
++E L L G + + + +E GA + + P R + K R D
Sbjct: 60 AARLKEKGSRLI-LRSGNPLEVLRDLAKETGAGAVYWQRLYDPAAIKRDSRVKTALR-ED 117
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY------PMLEQPIE-- 199
+ H + W + +T +G K+ + P L P +
Sbjct: 118 GLDAESFAGHLLFEPW--------TVETGQGGFYKVYSPFWKAVRGRDVGPALSAPSDIP 169
Query: 200 ---KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
W + DW ++A +R+G V GE AA + L F R+ +Y
Sbjct: 170 APDAWPDSEALADWQ--LSAPMRRGRAVVAAH-VTPGEQAAQQQLAL----FARDRIADY 222
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
R+ P + S LS +L G+IS ++C +A + +TFL+E +V RE A
Sbjct: 223 KDQRDFPDR-EGTSDLSHHLTVGEISPRQCWHAGWRALEEGKPGAETFLKE-VVWREFAY 280
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
+ ++ P+ + +W D + E +++ +T +A+ E+
Sbjct: 281 HLMYHSPHILTRNWREDW------DGFDWREEDDARVLAWKQGRTGVAFVDAAMRELFVT 334
Query: 377 GKMHGFMRM----YWAKKIL-EWTTG 397
G+MH RM Y K +L W G
Sbjct: 335 GRMHNRARMIVASYLTKHMLVHWKIG 360
>gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 145/370 (39%), Gaps = 45/370 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQAAPI-QIDLLKRRVAYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C A+ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+S + T++E D + PV + K L +Y + L Q W T
Sbjct: 121 LSITFTLYEGDL--IAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ----WPLT 174
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
I++D + +L+ C E L D F+ +L +Y R+ P
Sbjct: 175 SDPIEFDE--SDLLKSDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIP- 224
Query: 265 KPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTF--LEELIVR---RELADN 317
+ SGLSPYL G +S ++ ++ R L TF + EL+ R R L
Sbjct: 225 SVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAE 284
Query: 318 FCFYQ--PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
F N++ A W RKS D + + + +T PL +A+ +++
Sbjct: 285 FPKLSRGDNFNEKYNAVVW-RKSESDFKA-----------WCEGRTGYPLVDAAMLQLKQ 332
Query: 376 NGKMHGFMRM 385
G MH +RM
Sbjct: 333 TGWMHNRLRM 342
>gi|363422380|ref|ZP_09310456.1| deoxyribodipyrimidine photo-lyase [Rhodococcus pyridinivorans AK37]
gi|359732979|gb|EHK81983.1| deoxyribodipyrimidine photo-lyase [Rhodococcus pyridinivorans AK37]
Length = 461
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 178/470 (37%), Gaps = 76/470 (16%)
Query: 18 VLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL-GAKA 76
V GS+ + P + W RD R+ D L+ A + A+ V F L D L + A
Sbjct: 5 VPDTGSMAR---PSIIWFRRDLRLNDLPTLLSATEAADD----VLALFVLDDALLRPSGA 57
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL--LVTDFSPLREI 134
R+ F++ L+ L R++ ++ QG+ +P E A+ + +D P
Sbjct: 58 RRRDFLMGCLQALDRDLGGRLLVV----QGDPMMLVPQVAAEFDAAAVHISSDHGPY-GT 112
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
RR + + + D + + V P + K + +A + + ++ P
Sbjct: 113 RRDR-AVAEALGDVPLVATGSPYAVTPGRIT--KPDGTAYKVFSAFRRAWNDHGWHTPAA 169
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIG---WCESGEDAAMEVLKGSKDGFLTK 251
P + DW R +PE G GE AA+E + FL
Sbjct: 170 TGP--------DTADWVDPSGCSTR--VPIPEAGDEPTPPPGEAAALERWRE----FLDD 215
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
L+ Y TDR+ P SGLSPYL FG I + + R E TF EL R
Sbjct: 216 GLERYATDRDRPAY-DGTSGLSPYLKFGCIHPRTLLHDMRNRSD---EGAVTFRSELAWR 271
Query: 312 RELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
AD F +P NY+S A + D D + ++ + + +T P+
Sbjct: 272 DFYAD-VLFQRPETARTNYNSDFDAITY------DSGPDA-DALFAA--WCEGRTGFPIV 321
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A +++ G MH +RM A + L W G + K+ +DG +
Sbjct: 322 DAGMRQLLAEGVMHNRVRMIVASFLTKDLHLPWWRGARHFM--------KHLVDGDLVSN 373
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W+ G P F R N + KFD G YV+R V
Sbjct: 374 QHNWQWTAG----SGTDAAPYF---RVFNPTRQGEKFDPTG--EYVRRWV 414
>gi|344344031|ref|ZP_08774896.1| Deoxyribodipyrimidine photo-lyase [Marichromatium purpuratum 984]
gi|343804315|gb|EGV22216.1| Deoxyribodipyrimidine photo-lyase [Marichromatium purpuratum 984]
Length = 480
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GED A + + + FL L Y R++P +P S LSP+LHFG+I +R R
Sbjct: 206 GEDGA----RMAAEHFLAGPLGGYGKLRDHPDRP-GTSRLSPHLHFGEIGPRRLLALTRA 260
Query: 293 ARKLCPE-AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIY 351
A P D F EL RE A + ++ P D+ +
Sbjct: 261 ALPAPPTLGEDAFARELGW-REFAYHLLYHFPQTPEHP-----LDARFADYPWREPSDTE 314
Query: 352 TKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
E++++ +T PL +A E+ + G MH +RM
Sbjct: 315 LLERWQRGRTGIPLVDAGMRELWHTGWMHNRVRM 348
>gi|377567210|ref|ZP_09796444.1| deoxyribodipyrimidine photo-lyase [Gordonia sputi NBRC 100414]
gi|377525570|dbj|GAB41609.1| deoxyribodipyrimidine photo-lyase [Gordonia sputi NBRC 100414]
Length = 430
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 108/448 (24%), Positives = 171/448 (38%), Gaps = 59/448 (13%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA-RQLGFMLRGLRLLQRN 92
W+ RD R+ D AL A+ N+ V V F L + + R+L F+ LR L
Sbjct: 3 WLRRDLRLGDLPALGEAIGDGNRE---VLVCFVLDPRLESSSGERRLAFLYDSLRELDAK 59
Query: 93 IEETFQILFFLFQGEAEDNIPNFVRECGA-SLLVT-DFSPLREIRRCKDKICNRVSDS-V 149
++ ++ +G ++ IP V GA S+ V+ DFSP RR D + + +S
Sbjct: 60 LDGKLLVV----RGRPDEEIPRLVDAVGAGSVHVSEDFSPFG--RRRDDAVVTALEESGA 113
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID 209
T V + P V+ ++ S T P + + K ++
Sbjct: 114 TWQPVGS----PYLVSPGRVTKSDGT---PYKVFTPFFRAWRDHGWRAPAKTEAPSNILN 166
Query: 210 WDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
I + + P +GEDAA+E + F+ L Y +DR+ P
Sbjct: 167 PSDIHPSGRIRIPAAPTTLDLPAGEDAALERWRT----FVDDDLSGYESDRDRP-DLDVS 221
Query: 270 SGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLK 329
S +S YL FG I + A + ++ ++ +L EL R AD Y+ K
Sbjct: 222 SRMSAYLKFGNIHPRTMAADLGRS-----QSAQAYLRELAFRDFYADVL------YNWPK 270
Query: 330 GAWEWARKSLKDHASDKREHIYTK-EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
W D A D + + + + +T PL +A ++ G MH +RM A
Sbjct: 271 SLWHNWNDQFDDIALDTGKSAEKHFDAWREGRTGFPLVDAGMRQLSETGFMHNRVRMIAA 330
Query: 389 KKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVF 443
+ L W G A + D+ DG + G W+ D P F
Sbjct: 331 SFLVKDLHLPWWWG-------AKWFLDQL-TDGDMASNQHGWQWAAGTGTDAA----PYF 378
Query: 444 GKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
R N +KFD DG Y++R +
Sbjct: 379 ---RVFNPETQAKKFDPDG--DYIRRWI 401
>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 476
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 101/457 (22%), Positives = 175/457 (38%), Gaps = 71/457 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGMTAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEK--LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
+H ++ W+ +K EY T P Y + +Q I K QSI W S
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFT---------PFY---HAFQKQVISKPISKVQSIKWGSS 171
Query: 214 IAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 172 LPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP- 226
Query: 265 KPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFC 319
A S L+PYL FGQIS + L + K C + +++F+ + I RE +
Sbjct: 227 NQNAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLL 285
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
++ P ++ K+ + + E + ++K +T P +A E+ G M
Sbjct: 286 YHYPF-----TVYKPLNKNFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTGFM 338
Query: 380 HGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
H RM + K +L W G A + D +D N +G W V
Sbjct: 339 HNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAG 386
Query: 435 QGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD DG Y+++ V
Sbjct: 387 SGADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|423581405|ref|ZP_17557516.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
gi|401216170|gb|EJR22885.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
Length = 476
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 103/456 (22%), Positives = 179/456 (39%), Gaps = 69/456 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +P+ + F +G+ A+ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPIYIQDETFS--IGSAAK--WWLHHAIIDIKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNIQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N +Q I K T QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPTSKVQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W + E+ A +V K F + +L Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKK----FFSSKLAFYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P ++ K+ + +K E + ++K +T P +A E+ G MH
Sbjct: 287 HYPF-----TVYKPLNKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMH 339
Query: 381 GFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
RM + K +L W G A + D +D N +G W V
Sbjct: 340 NRARMAVASFLVKHLLISWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGS 387
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y+++ V
Sbjct: 388 GADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|451972713|ref|ZP_21925917.1| deoxyribodipyrimidine photolyase family [Vibrio alginolyticus
E0666]
gi|451931406|gb|EMD79096.1| deoxyribodipyrimidine photolyase family [Vibrio alginolyticus
E0666]
Length = 471
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 102/245 (41%), Gaps = 40/245 (16%)
Query: 231 ESGED---AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
ES ED + +VLK ++ F +R Y DR+ P S LSPYL G +S ++C
Sbjct: 199 ESSEDWFASTNDVLKQLRE-FARERSDAYKEDRDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P KG +W D
Sbjct: 257 ARLYAENQQNDLTEGKATWLSE-IIWREFYQHLLVFEPKLVKGKGFIDW---------ED 306
Query: 346 KREHIYTKEQFEK---AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
K + Y ++ FE+ T P+ +A+ ++ G MH +RM A + ++W G
Sbjct: 307 KIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
A +++ + D NG G WS G +P F R N K
Sbjct: 367 E------AYFMSKLVDGDFAANNG--GWQWSAST----GCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG 462
FD DG
Sbjct: 412 FDSDG 416
>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
Length = 437
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 149/367 (40%), Gaps = 57/367 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF----NLFDQFLGAKARQLGFMLRGLR 87
++W RD R+ DN + ++ + + PV F + D AR + F+ L+
Sbjct: 8 IFWFRRDLRLDDNVGFLASLKEEH----PVMPIFIFDPEILDNLPEDDAR-VTFIFETLQ 62
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRV 145
++ ++E ++ G+ E+ ++ + T D+ P KD+
Sbjct: 63 DMRNELQENHHSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPY-----AKDR----- 112
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR 205
D +D +NV + + + ++G + Y++ P ++ +E + +
Sbjct: 113 -DEKIQKLLDENNVKFETFKDQVIFEKDEVVKGDGDP----YVVYTPYMKTWMEHFKNSD 167
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESG-EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
I + S L + +P + + G + ++++V L +R Y RN P
Sbjct: 168 LKIHYTSQFLDNLVQNTRLPNLSLSDIGFKKSSLKVPDFDTTPSLIQR---YEDTRNIPS 224
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
K S L P+L FG +S ++ +K E TFL+EL V RE ++ P+
Sbjct: 225 K-EGTSRLGPHLRFGTVSVRKMV------KKANNEKNKTFLQEL-VWREFFMQVLYHNPS 276
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIY---TKEQFEK---AQTADPLWNASQMEMVYNGK 378
++ D K ++I KE+FEK +T PL +A ++ +G
Sbjct: 277 -------------TVTDAFKKKYDNIQWRNNKEEFEKWKNGKTGFPLVDAGMRQLNKSGF 323
Query: 379 MHGFMRM 385
MH +RM
Sbjct: 324 MHNRVRM 330
>gi|421663905|ref|ZP_16104045.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC110]
gi|421695547|ref|ZP_16135154.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-692]
gi|404565878|gb|EKA71041.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-692]
gi|408712202|gb|EKL57385.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC110]
Length = 480
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 107/471 (22%), Positives = 190/471 (40%), Gaps = 76/471 (16%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---CNRVSDSVT 150
I + I NF+ +DFS I + I N + T
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFI---------SDFSKTYNIEKVYANIEIGVNELKRDKT 116
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGK---------------INKL----LPE-YLID 190
+ + + +++ ++ + +++R + KL LP+ Y +
Sbjct: 117 VQDYLNQHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVP 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
E P++ R++ID D I ++ + W GE A+E L D F+
Sbjct: 177 NKQNEVPLD--FLQRKNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIE 229
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLE 306
+ + +Y +R+ P + S LSPYL+ G +S ++C + + L E T+L+
Sbjct: 230 ESVCHYKLERDFP-HIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLANEGQQTWLD 288
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
EL+ RE + F ++ + + + S K + EH+ ++ QT P+
Sbjct: 289 ELL-WREFYQHILF---DFPHVSKHIPFKKDSQKIKWNHNPEHLTA---WQTGQTGIPIV 341
Query: 367 NASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A +++ G MH +RM A +++W G + + ++ IDG
Sbjct: 342 DAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAAN 393
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIA-YVKRI 470
G W C G P F R N +KFD +G YI+ +VK +
Sbjct: 394 NGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEGEYISQWVKEL 437
>gi|403673771|ref|ZP_10936055.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. NCTC 10304]
Length = 480
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 185/466 (39%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNQHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFFSSISKEQQDLW-PVGEQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKLERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKNTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|383936686|ref|ZP_09990108.1| deoxyribodipyrimidine photo-lyase [Rheinheimera nanhaiensis E407-8]
gi|383702233|dbj|GAB60199.1| deoxyribodipyrimidine photo-lyase [Rheinheimera nanhaiensis E407-8]
Length = 472
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 108/480 (22%), Positives = 177/480 (36%), Gaps = 87/480 (18%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF----NLFDQFLGAKARQLGFMLRGL 86
V W D R DN L A+D A ++N + F + Q A +Q F+ R +
Sbjct: 5 TVVWFRNDLRTLDNAVLCSAIDHAARHNTALVGLFIATPQTWAQHDMAPIKQ-DFIRRRV 63
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP----LREIRRCKDKIC 142
+ L+ + I +G + +P + VT F+ LRE +R K+
Sbjct: 64 QALRTELT-ALNIPLLAVEGSSYQQVPALFGQLSQVFQVTVFAQTEYELREQQR-DAKVA 121
Query: 143 NRVS-DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY-PMLEQPIEK 200
R+S + + + D ++P S +T +G I K+ + + L Q +
Sbjct: 122 QRLSANKGVLVQFDTQCIMP--------PGSIRTQQGDIYKVFTPFKRSWLARLHQQGVQ 173
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM------EVLKGSKDGFLTKRLK 254
G + ++ + ++PE + G+D++ E++ F +R+
Sbjct: 174 CFGRPKRVNQPPL---------QLPEHSVMQPGDDSSANWPVTEELMLTRLRTFCQQRVA 224
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA----LEARKARKLCPEAIDTFLEELIV 310
+Y R+ P S LSPYL G ISA +C LEA+++ + +L ELI
Sbjct: 225 DYQQQRDFP-AVDGTSKLSPYLAIGAISAMQCVARLQLEAKESWAREKSGAEVWLSELIW 283
Query: 311 RRELADNFCFY------QPNYDSLKGAWEWAR-KSLKDHASDKREHIYTKEQFEKAQTAD 363
R Y QP + + A W K+L D QT
Sbjct: 284 REFYKHILVAYPQLIKHQP-FQADTAAIRWTNDKTLFQAWCD-------------GQTGY 329
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRD 418
P+ +A+ ++ G MH +RM A + ++W G Y K IDG
Sbjct: 330 PIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLHIDWRWGER-------YFMSKL-IDGDF 381
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-----YIAYVKRIVGG 473
G W+ D P F R N KFD G Y+ + ++ G
Sbjct: 382 AANNGGWQWAASTGTDAA----PYF---RIFNPVSQSEKFDPQGDFIRLYVPELSKLQGA 434
>gi|381168517|ref|ZP_09877711.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
gi|380682377|emb|CCG42529.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
Length = 482
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 99/245 (40%), Gaps = 41/245 (16%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
E+G +A +++ FL +RLK Y R+ P + S LSP+L FG+IS +R A
Sbjct: 208 EAGAEARLQI-------FLDQRLKAYAVARDLPGQA-GTSRLSPHLAFGEISPRRAFHAA 259
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHI 350
R A +D FL EL RE + F P+ E+A A R+
Sbjct: 260 RDAAG-SGNGLDRFLAELGW-REFCAHLLFTVPDLPEQPLRGEFA-------AFPWRDDP 310
Query: 351 YTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIA 405
+++ +T PL +A E+ G MH +RM A +L W G A
Sbjct: 311 ELLVAWQRGRTGFPLVDAGMRELWTTGWMHNRVRMVVASFLVKDLLLSWRLG-------A 363
Query: 406 IYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+ D +D + W + CG P F R N + KFD DG
Sbjct: 364 DWFRDTL-VDADLASNVASWQWVAGCGA-----DAAPFF---RIFNPTLQGEKFDPDGR- 413
Query: 465 AYVKR 469
YV+R
Sbjct: 414 -YVRR 417
>gi|409079787|gb|EKM80148.1| hypothetical protein AGABI1DRAFT_38863 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 539
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 25 DKKRGPVV-YWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF--DQFLGAK-ARQL 79
D +G VV YWM F D R+ DN AL A +QA K+ +P+AV F L D F + +R++
Sbjct: 3 DPDKGKVVFYWMRFADLRITDNRALHKASEQAQKDGIPLAVLFVLSPEDYFAHDRSSRRI 62
Query: 80 GFMLRGLRLLQRNIEETFQILFFL 103
F+LR L+LLQ + L+ +
Sbjct: 63 DFVLRNLKLLQEAFSKLHIPLYVI 86
>gi|388580886|gb|EIM21198.1| deoxyribodipyrimidine photo-lyase [Wallemia sebi CBS 633.66]
Length = 544
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 98/432 (22%), Positives = 157/432 (36%), Gaps = 79/432 (18%)
Query: 25 DKKRGPVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLG 80
D+ VV+WM D R+ D+ L A D A + +PV + + A AR++
Sbjct: 23 DEDEKCVVFWMRMHDLRIVDSRGLSFASDYAARYGIPVIILHVFSPEDYAAHDRSARRID 82
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIR 135
+LR L LQ ++E I + F E IP +FV+ A L + + E+
Sbjct: 83 LILRKLHSLQEELDE-LNIPLYTFTAEKRREIPQLILDFVKNNNAKHLFGNIEYEIDELF 141
Query: 136 RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE 195
R I S+ + + +VP + K K + ++D P
Sbjct: 142 RDLQVINLANEQSIEVRLEHDNMIVPPFKVLTKTTNKPPMTYTAYLKSWEKMVLDDPSYR 201
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVP-EIGWCES------------GEDAAMEVLK 242
TG ++ D + + G E+P EI E G A E+L+
Sbjct: 202 DE----TGRVEANDKSAREQYKVLFGKEIPNEIEGFECHDKVKMKDLWPVGPKTADEILE 257
Query: 243 -------------------GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA 283
G+++ R+K Y RN S +SPYL GQIS
Sbjct: 258 RFLHTKNRKDATEANPLGEGAEEDVENSRIKEYANGRN-ITTGETTSKISPYLASGQIST 316
Query: 284 QRCALEARKARK-----LCPEAIDTFLEELIVRRELADNFCFYQP----NYDSLKG---- 330
++C A+K + L + E IV ++ N P + LK
Sbjct: 317 RQCFNRAQKFKNGYKIDLTRDTGVGMWSEEIVWKDFYQNVLCVNPRISMGHPFLKKYRFI 376
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390
WE+ L E + K +T P+ +A+ +++ G MH MRM A
Sbjct: 377 EWEYNDDHL--------------EAWHKGKTGWPIVDAAMRQLISTGWMHNRMRMTVASY 422
Query: 391 I-----LEWTTG 397
+ ++W G
Sbjct: 423 LCKDLMIDWREG 434
>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|384187171|ref|YP_005573067.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675484|ref|YP_006927855.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452199537|ref|YP_007479618.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174613|gb|AFV18918.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452104930|gb|AGG01870.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 476
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 100/451 (22%), Positives = 179/451 (39%), Gaps = 59/451 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQEETFS--IGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ WV +K K N + ++ +PI + QSI W + +
Sbjct: 124 SHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ KS ++ +K E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYRPLNKSFENFPWNKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|440731048|ref|ZP_20911095.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
gi|440375449|gb|ELQ12158.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
Length = 473
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 106/457 (23%), Positives = 173/457 (37%), Gaps = 65/457 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W RD R+ D+ +HA A VPV V + A A L ++ R L L
Sbjct: 4 AIVWFRRDLRLHDH-PALHAALAAGHTPVPVYVHSPGDEGAWSAGAASLSWLQRALAALD 62
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
++ L L QG AE + ++ CGA + + + P + R K K R
Sbjct: 63 AQLQARGSRLI-LRQGPAETVLRELIQACGAVAVYWNRRYEPATQPRDAKLKRELR-EQG 120
Query: 149 VTIHEVDAHNVVPVW-VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
+ +H ++ + W +A+++ G P + + P +
Sbjct: 121 LDVHSYNSALLFEPWQLATQQ--------GGPYKVFTPFWRSALSHWQVPALRPAPKTLP 172
Query: 208 IDWDSIIAAVLRKGAEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
++ + L++ P +GW + GE A E L+ DG L+ Y R
Sbjct: 173 PPPPALPSLPLQQLGLAPALGWDRGFWEVWQPGEAGAHEALEVFVDG----ALRGYVEGR 228
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRELADNFC 319
+ P + S LSP+LHFG+I+ R K R AID ++ +L R+ A +
Sbjct: 229 DRPDQ-VGTSRLSPHLHFGEIAPWRIVAALEKQRSAATGAAIDGYIRQLGW-RDFAHHLL 286
Query: 320 FYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
+ P N + + WA + +++ +T P+ +A E+
Sbjct: 287 HHFPATPEHNLNPRFARFRWATPDPAQ-----------LQAWQRGRTGVPIVDAGLRELW 335
Query: 375 YNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
+ G MH +RM A + + W+ G A + D +D N +G W
Sbjct: 336 HTGWMHNRVRMIVASYLCKHLRVHWSEG-------ARWFWDTL-VDADLANNTLGWQW-- 385
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIA 465
V G P F R N +KFD G YIA
Sbjct: 386 --VAGTGADAAPYF---RVFNPVTQAQKFDPQGRYIA 417
>gi|421806773|ref|ZP_16242635.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC035]
gi|410417316|gb|EKP69086.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC035]
Length = 480
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 185/466 (39%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 S-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R++P + S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYNVERDSP-HIQGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQMGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|344204249|ref|YP_004789392.1| deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
gi|343956171|gb|AEM71970.1| Deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
Length = 437
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/372 (19%), Positives = 153/372 (41%), Gaps = 62/372 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF----NLFDQFLGAKARQLGFMLRGL 86
+++W RD R+ DN QA +N+VPV F + + A AR + F+ + +
Sbjct: 6 ILFWFRRDLRLDDNVGFY----QALQNDVPVLPLFIFDTEILENLPKADAR-VTFIHKQI 60
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNR 144
+ L + + F + +++ + T D+ P + R +
Sbjct: 61 QKLNNQLSANYGSGIAQFHDSPKAVFKKLIQDYTVEAVYTNHDYEPYAKKRDSQ------ 114
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
I E+ N +P +++ + + + + Y++ P + + E + +
Sbjct: 115 ------IKEILVQNDIPFKTFKDQVIFEKEEV---VKDDGDPYVVYTPYVRKWKENFNPS 165
Query: 205 RQSIDWDSI--IAAVLRKGAEVPEIGWCESG-EDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+++D++ + L + +P++ + G E+++++V + L ++ Y R+
Sbjct: 166 VHLVEYDTLSDLRKNLYQSKSLPQLSLEDMGFEESSVKVPDFTVSSELIQK---YEDTRD 222
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR---ELADNF 318
P K + S L P+L FG +S ++ +K E +TF ELI R ++ +F
Sbjct: 223 YPAKEKGTSRLGPHLRFGTVSIRKM------VKKAVDEKNETFWNELIWREFFMQILWHF 276
Query: 319 CF-----YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
++P YD + EW R + E+++ +T PL +A E+
Sbjct: 277 PHTVNKAFRPKYDRI----EW------------RNNEGEFEKWKAGETGYPLVDAGMREL 320
Query: 374 VYNGKMHGFMRM 385
G MH +RM
Sbjct: 321 NKTGYMHNRVRM 332
>gi|402759704|ref|ZP_10861960.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. NCTC 7422]
Length = 481
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 106/467 (22%), Positives = 190/467 (40%), Gaps = 67/467 (14%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W +D R+ D+ AL HA QA V ++ + A + + F LR L+ L++
Sbjct: 8 LIWFRQDLRIHDHAALWHAT-QAGPCIAMVILSPEQWQLHHDAPIK-IEFYLRQLQALKQ 65
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP-----LREIRRCKDKICNRVS 146
+E L +D IP+F+++ + + + + E++R D+ +
Sbjct: 66 QLEHLHIPLLVQIIPLWKD-IPDFLKQLAQRIPIHNIYANIELAVNELKR--DQSVQKFL 122
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSA---------KTLRGKINKLLPEYLIDYPMLEQP 197
+ + H+ VAS + + + KT ++ LP+ P + P
Sbjct: 123 NQQQKELILFHDRTLFPVASIRNQSNQPYQVFGAFKKTCYQRLQHGLPQ-CYPAPQTQHP 181
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
I Q D + + +++ + W + GE A+ +L D F+ K+L Y
Sbjct: 182 IALDDSLFQQSDLQQLHSNYIQQISTTRYTEW-QVGEQHALMLL----DQFIDKQLAGYK 236
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIVRRE 313
T R+ P S LS YL+ G IS ++C + + ++ E T+L+EL+ R E
Sbjct: 237 TARDFP-AVAGTSQLSAYLNIGIISIRQCLQALFRQQHGHFEIQSEGQQTWLDELLWR-E 294
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDK----REHIYTKEQFEKAQTADPLWNAS 369
+ F P K L A+ K R+ +++++ QT P+ +A
Sbjct: 295 FYQHVLFDFPQ----------VSKHLPFQAATKKIRWRDDPIALKKWQQGQTGIPIIDAG 344
Query: 370 QMEMVYNGKMHGFMR----MYWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
+M+ G MH +R M+ +K +L +W G + + ++ IDG G
Sbjct: 345 MRQMLATGWMHNRVRMICAMFLSKNLLIDWRKGEQWFM--------QHLIDGDLAANNGG 396
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 397 WQW--CA--STGTDAVPYF---RVFNPITQSQKFDPEG--EYIRQWV 434
>gi|421082068|ref|ZP_15542962.1| Putative deoxyribodipyrimidine photolyase [Pectobacterium wasabiae
CFBP 3304]
gi|401703103|gb|EJS93332.1| Putative deoxyribodipyrimidine photolyase [Pectobacterium wasabiae
CFBP 3304]
Length = 488
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 165/388 (42%), Gaps = 61/388 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
V W+ D RV DN AL A + + V +A + RQ F+L L L+Q
Sbjct: 5 VVWLRNDLRVTDNLALHAACHDPHATVLAVFIATPAQWKKHDMALRQATFLLENLTLVQH 64
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREI-RRCKDK-ICNRVSD 147
+ E L + + ++ V+ C A TD ++ EI R +DK + +R++D
Sbjct: 65 ALAEKGIPLHYHECTDFSASVDWLVQFC-AQQQATDLFYNHQYEINERLRDKQVKDRLAD 123
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
SV H ++P S T G++ K+ + + +++ +E T +
Sbjct: 124 SVVCHGYHDSLLLP--------PGSVLTGNGEMYKVFTPFRQAF--IKRLLEADTTCVPA 173
Query: 208 ID--WDSIIAAVLRKGAEVPEIGWCES----GEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
D + I V P++ GE A++ L+ F +++++Y R+
Sbjct: 174 PDVRGEPIKDKVALSPFSYPQVEVNSDDFPCGERVALQQLRR----FCREQVQDYDRQRD 229
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR--- 311
P +P S LSPYL G +S ++C + R CPE ++ T+ EL+ R
Sbjct: 230 FPAQP-GTSKLSPYLALGIVSPRQC---FNRLRTECPEMLERREGGAFTWFNELVWREFY 285
Query: 312 RELA---DNFCFYQPNYDSLKGAW-EWA--RKSLKDHASDKREHIYTKEQFEKAQTADPL 365
R L C ++P AW +W R+S +D A+ +++ +T P+
Sbjct: 286 RHLIVSWPQLCKHRPF-----TAWTQWVKWRESPEDLAA-----------WQQGKTGYPI 329
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILE 393
+A+ ++ G MH +RM A +++
Sbjct: 330 VDAAMRQLNETGWMHNRLRMICASFLVK 357
>gi|380513692|ref|ZP_09857099.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas sacchari
NCPPB 4393]
Length = 473
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 176/466 (37%), Gaps = 83/466 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W RD R+ D AL A+D A VPV + + A A ++ R L L
Sbjct: 4 AIVWFRRDLRLHDQPALQAALD-AGHTPVPVYLHSPEDEGAWAAGAASRSWLQRSLAALD 62
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
+ L L QG AE + + +C A + + + P + R + K R
Sbjct: 63 AQLRARGSRLI-LRQGPAEAALRQVIADCSAEAVYWNRRYEPATQPRDARLKRELREQGL 121
Query: 149 VTIHEVDAHN--------------------VVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
EV +HN P W ++ + L+ L P
Sbjct: 122 ----EVHSHNSALLFEPWQLATQQGGPYKVFTPFWRSALS-HWQVPALQAAPKTLPPPPA 176
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
+ P+E+ G +++WD V + G E+G A++V F
Sbjct: 177 T---LDSLPLER-LGLAPTLEWDRGFWEVWQPG---------EAGAHEALDV-------F 216
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR-CALEARKARKLCPEAIDTFLEE 307
+ L++Y R+ P + S LSP+LHFG+I+ R A R R AID ++ +
Sbjct: 217 VDGALRDYLDGRDRPDQ-VGTSRLSPHLHFGEIAPWRIVATLERHRRAATAAAIDGYIRQ 275
Query: 308 LIVRRELADNFCFYQPNYD--SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
L R+ A + + P+ +L +E R + D A +++ +T P+
Sbjct: 276 LGW-RDFAHHLLHHFPDTPERNLNPRFERFRWATPDPAQ--------LHAWQRGRTGVPI 326
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
+A E+ + G MH +RM A + + W+ G A + D +D N
Sbjct: 327 VDAGLRELWHTGWMHNRVRMIVASYLCKHLRVHWSEG-------ARWFWDTL-VDADLAN 378
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIA 465
+G W V G P F R N +KFD G YIA
Sbjct: 379 NTLGWQW----VAGTGADAAPYF---RVFNPVTQAQKFDPKGEYIA 417
>gi|215482677|ref|YP_002324873.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
AB307-0294]
gi|301511002|ref|ZP_07236239.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB058]
gi|421623198|ref|ZP_16064087.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC074]
gi|421643959|ref|ZP_16084447.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-235]
gi|421647372|ref|ZP_16087789.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-251]
gi|421660892|ref|ZP_16101074.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-83]
gi|421700586|ref|ZP_16140099.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-58]
gi|421794872|ref|ZP_16230963.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-21]
gi|213987651|gb|ACJ57950.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
AB307-0294]
gi|404569237|gb|EKA74324.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-58]
gi|408506634|gb|EKK08340.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-235]
gi|408516477|gb|EKK18050.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-251]
gi|408693807|gb|EKL39405.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC074]
gi|408703501|gb|EKL48896.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-83]
gi|410402809|gb|EKP54914.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-21]
Length = 480
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 102/461 (22%), Positives = 183/461 (39%), Gaps = 74/461 (16%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---CNRVSDSVT 150
L + + +E ++DFS I I N + T
Sbjct: 67 SALHIPLVI--------QVIPYWKEIAT--FISDFSKKYNIENVYANIEIGVNELKRDKT 116
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGK---------------INKL----LPE-YLID 190
+ + + +++ ++ + +++R + KL LP+ Y +
Sbjct: 117 VQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVP 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
E P++ G ++ID D I ++ + W GE A+E L D F+
Sbjct: 177 NKQNEVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIE 229
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLE 306
+ + +Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+
Sbjct: 230 QSVCHYKVERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLD 288
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
EL+ RE + F ++ + + + S K + EH+ ++ QT P+
Sbjct: 289 ELL-WREFYQHILF---DFPHVSKHIPFKKDSQKIKWNHNPEHLTA---WQTGQTGIPIV 341
Query: 367 NASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A +++ G MH +RM A +++W G + + ++ IDG
Sbjct: 342 DAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAAN 393
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G W C G P F R N +KFD +G
Sbjct: 394 NGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG 427
>gi|434375590|ref|YP_006610234.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874147|gb|AFQ26314.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 102/453 (22%), Positives = 177/453 (39%), Gaps = 63/453 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAIIDVQKQLK-A 63
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
F + G+ ++ I + + + + + + + + K+ + D + E +
Sbjct: 64 LGSTFIIRNGKTQEEILSLIEQLDITAVYWNICYDPDRLKSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ + +K K N + ++ +PI K QSI W + +
Sbjct: 124 SHLLLEPGIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPIRK----VQSIKWGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKAFKKFFSSKLASYSEGRDFP-NQNTHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN- 324
L+PYL FGQIS L + + C E +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVSWMYHYLINKSTERQCSLFEEQVNSFIRQLI-WREFSYYLLYHYPFT 291
Query: 325 -YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
Y L KS ++ DK E + ++K +T P +A E+ G MH
Sbjct: 292 VYKPL-------NKSFENFPWDKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRA 342
Query: 384 RM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK 438
RM + K +L W G A + D +D N +G W V G
Sbjct: 343 RMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGAD 390
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y+++ V
Sbjct: 391 ASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|423447663|ref|ZP_17424542.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
gi|401130074|gb|EJQ37743.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
Length = 476
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 106/454 (23%), Positives = 177/454 (38%), Gaps = 65/454 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G E+ I + + + + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGRTEEEIRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLE-GKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI K QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------IIPKPISK----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D E + F + +L Y R+ P +
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQ-NVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 --YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
Y L KS + + E + T ++K +T P +A E+ G MH
Sbjct: 291 TVYKPL-------NKSFEHFPWNNEEELLTV--WQKGETGYPFIDAGMRELWQTGFMHNR 341
Query: 383 MRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
RM + K +L W G A + D ID N +G W V G
Sbjct: 342 ARMAVASFLVKHLLIPWQEG-------AKWFMDTL-IDADIANNTMGWQW----VAGSGA 389
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 390 DASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|441513241|ref|ZP_20995072.1| deoxyribodipyrimidine photo-lyase [Gordonia amicalis NBRC 100051]
gi|441451858|dbj|GAC53033.1| deoxyribodipyrimidine photo-lyase [Gordonia amicalis NBRC 100051]
Length = 454
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 109/475 (22%), Positives = 174/475 (36%), Gaps = 82/475 (17%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL--GAKARQLGFMLRGLRLLQR 91
W+ RD R+ D + A+ A + V + F + D L + R+L F+ LR
Sbjct: 2 WLRRDLRLSD----LPALAAARGTDSSVLLCF-VVDPRLEKSSGERRLAFLFDSLR---- 52
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASL--LVTDFSPLREIRRCKDKICNRVSDSV 149
++ + +G E+ IP R GA + DFSP RR + + + D+
Sbjct: 53 EVDAKLDGRLLVVRGRPEEEIPRLARAVGAGSVHISGDFSPFG--RRRDEAVDEALGDTP 110
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY--PMLEQPIEKWTGTRQS 207
+ V P V + G+ K+ Y + +P +
Sbjct: 111 LEATGSPYLVSPGRVTKDD---------GEPYKVFTPYFRRWRDHGWRKPADSSVPDSAV 161
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
+D + + + + P +GEDAA+ F+ L +Y T RN+P
Sbjct: 162 LDPSDVTKSGRIRIPKAPTTLSFPAGEDAALARWAE----FVDDDLADYDTGRNDPAA-D 216
Query: 268 ALSGLSPYLHFGQISAQRCALE-ARKARKLCPEAID---------------------TFL 305
S +S YL +G I + A + R A + E D +L
Sbjct: 217 VTSRMSAYLKYGNIHPRTLAADLTRPAPRGAKERSDDAGSAPRGAKERSDGASRGAQAYL 276
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK-EQFEKAQTADP 364
EL R AD ++ P+ SL W + A D E Y + E ++ +T P
Sbjct: 277 RELAFRDFYAD-VLYHWPH--SLWHNWN---RQFDGIALDTDEKAYERFEAWKAGRTGFP 330
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDP 419
L +A ++ G MH +RM A + L W G + L + +DG
Sbjct: 331 LVDAGMRQLAEIGWMHNRVRMVTASFLVKDLHLPWWWGAKWFL--------EQLVDGDMA 382
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGT 474
+ G W+ D P F R N +KFD +G Y++R VG T
Sbjct: 383 SNNHGWQWAAGTGTDAA----PYF---RVFNPEAQAKKFDPEG--EYIRRWVGDT 428
>gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
Length = 477
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 27/193 (13%)
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
QP+E G I WD +A + GA +G +E FL
Sbjct: 180 QPLET-LGLLPRIRWDEKLAPCWQPGA---------AGAQQRLER-------FLDGAGPA 222
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEELIVRR 312
Y R+ P +P S LSP+LHFG+IS + R A+++ P +A+DTFL EL R
Sbjct: 223 YGERRDFPAQP-GTSRLSPHLHFGEISIRAVWHAVRDAQQMQPAAADALDTFLAELGW-R 280
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
E A + + QP ++R ++ + + + T PL +A E
Sbjct: 281 EFAYHLLWQQPELHRTPIDERFSRFPWREDPDGA-----LLDAWRRGATGIPLVDAGMRE 335
Query: 373 MVYNGKMHGFMRM 385
+ G MH +RM
Sbjct: 336 LWATGWMHNRVRM 348
>gi|440703964|ref|ZP_20884860.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
gi|440274432|gb|ELP62999.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
Length = 457
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 41/222 (18%)
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL----IVRREL 314
DR++ L A S LSP+LHFG +SA AR+A D F+ +L R+ L
Sbjct: 220 DRHDDLAGDATSRLSPHLHFGTLSAVELVHRARRA---GGPGADAFVRQLAWRDFHRQVL 276
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
A +Y + W R++ +D E +++ +T P+ +A+ ++
Sbjct: 277 AARPGSATADYRTKHDRWRSERQARED-----------VEAWKEGRTGYPIVDAAMRQLR 325
Query: 375 YNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
+ G MH R+ A + ++W G L + +DG N + W +
Sbjct: 326 HEGWMHNRGRLLTASFLTKTLYVDWRVGARHFLDLL--------VDGDIANNQLNWQW-M 376
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G G RP R +N +++D DG AYV+R V
Sbjct: 377 AGT---GTDSRP----NRVLNPVTQSKRYDPDG--AYVRRWV 409
>gi|343924728|ref|ZP_08764268.1| putative deoxyribodipyrimidine photo-lyase, partial [Gordonia
alkanivorans NBRC 16433]
gi|343765360|dbj|GAA11194.1| putative deoxyribodipyrimidine photo-lyase, partial [Gordonia
alkanivorans NBRC 16433]
Length = 416
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 154/416 (37%), Gaps = 78/416 (18%)
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL--LVTDFSPLREI 134
R+L F+ LR L ++ ++ +G ++ IP + A + DF+P
Sbjct: 31 RRLAFLFDSLRELDAKLDGKLLVV----RGRPDEEIPRLAKAVDAEAVHISGDFTPFG-- 84
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
RR + + + D + V P G+I K E Y +
Sbjct: 85 RRRDEAVAEALGDIPLEATGSPYLVSP----------------GRITKDDGE---PYKVF 125
Query: 195 EQPIEKW--TGTRQSIDWDSIIAAVLR----------KGAEVPEIGWCESGEDAAMEVLK 242
+W G RQ D +AVL K + P +GEDAA+
Sbjct: 126 TPYFRRWREHGWRQPADSSIPGSAVLDPSGVKKSGRIKIPKAPTTLSFPAGEDAALARWA 185
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
F+ L +Y T RN+P S +S YL +G I + L A R +A
Sbjct: 186 E----FVDDDLADYDTGRNDPAA-DVTSRMSAYLKYGNIHPR--TLAADLGRSAGGQA-- 236
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK-EQFEKAQT 361
+L EL R AD ++ P+ SL W + D D + Y + E ++ +T
Sbjct: 237 -YLRELAFRDFYAD-VLYHWPH--SLWHNWN---RQFDDIELDTDDEAYERFEAWKAGRT 289
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDG 416
PL +A ++ G MH +RM A + L W G E L + +DG
Sbjct: 290 GFPLVDAGMRQLAETGWMHNRVRMVTASFLVKDLHLPWWWGAEWFL--------EQLVDG 341
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
+ G W+ D P F R N +KFD +G YV+R VG
Sbjct: 342 DMASNNHGWQWAAGTGTDAA----PYF---RVFNPEAQAKKFDPEG--EYVRRWVG 388
>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
CB15]
gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
Length = 483
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 151/384 (39%), Gaps = 70/384 (18%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGLR 87
V+ W +D R+ DN AL HA Q+ + +P+ + D+ G + L ++ + L+
Sbjct: 17 VIVWFRKDLRIADNPALRHAA-QSGRPVIPLYI----LDETPGIRPMGGASLWWLDKSLK 71
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV---------TDF-SPLREIRRC 137
L ++E T L +G A + + + + GA +V TD + ++ R
Sbjct: 72 SLAASLE-TLGTKLVLRKGVAAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALRD 130
Query: 138 KDKICNRVSDSVTIHEVDAHN--------VVPVW-VASEKLEYSAKTLRGKINKLLPEYL 188
+ C + + N P W A E L A T P +L
Sbjct: 131 RGVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTA-------APGHL 183
Query: 189 ID---YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
+ +P E + W DW KG ++ G E+G A +
Sbjct: 184 VAPARFPASES-LASWNLHPTKPDWS--------KGFDLWTPG--EAGAHARL------- 225
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA--RKLCPEA-ID 302
D FL +K Y R+ P A S LSP+LHFG+I ++ L R A + P A D
Sbjct: 226 DAFLKGPIKGYGDQRDIP-GVEATSKLSPHLHFGEIGPRQVWLATRSAADQGDIPLAEAD 284
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEW-ARKSLKDHASDKREHIYTKEQFEKAQT 361
FL E I RE + + P+ S E+ +KD + E +++ QT
Sbjct: 285 KFLSE-IGWREFNHSILYNWPHMPSANFKPEFDGFPWVKDEGA--------LEAWKRGQT 335
Query: 362 ADPLWNASQMEMVYNGKMHGFMRM 385
P+ +A E+ G MH +RM
Sbjct: 336 GYPIVDAGMRELWTTGFMHNRVRM 359
>gi|421852148|ref|ZP_16284838.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371479515|dbj|GAB30041.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 473
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 18/172 (10%)
Query: 219 RKGAEVPEI--GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
R G + P + GW SGE AA L F+ L +Y T R+ P S LSPY+
Sbjct: 195 RVGTKPPALPPGWT-SGEKAAHANLHR----FIENALADYETQRDRADAPHGTSLLSPYI 249
Query: 277 HFGQISAQRCALEARKARKLCPE---AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
GQIS ++ R A P A + FL EL R+ A F P+ + E
Sbjct: 250 RVGQISVRQIWHAIRHAEHQNPHLATAAEKFLAEL-GWRDFAWMQMFTTPDLATRNLRAE 308
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + A+D +++ QT PL +A ++ G MH +RM
Sbjct: 309 FDHMPWRADAAD-------LAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRM 353
>gi|421649527|ref|ZP_16089918.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC0162]
gi|425750310|ref|ZP_18868277.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-348]
gi|445460376|ref|ZP_21448285.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC047]
gi|408513531|gb|EKK15149.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC0162]
gi|425487712|gb|EKU54070.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-348]
gi|444773611|gb|ELW97707.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC047]
Length = 480
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 187/466 (40%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
L + ++ I NF+ + + + EI + K V D + H
Sbjct: 67 AALHIPLVIQVIPDWKE-IANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKVERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQMGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 QQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|169795130|ref|YP_001712923.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AYE]
gi|169148057|emb|CAM85920.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Acinetobacter baumannii AYE]
Length = 498
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 102/461 (22%), Positives = 183/461 (39%), Gaps = 74/461 (16%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 27 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 84
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---CNRVSDSVT 150
L + + +E ++DFS I I N + T
Sbjct: 85 SALHIPLVI--------QVIPYWKEIAT--FISDFSKKYNIENVYANIEIGVNELKRDKT 134
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGK---------------INKL----LPE-YLID 190
+ + + +++ ++ + +++R + KL LP+ Y +
Sbjct: 135 VQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVP 194
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
E P++ G ++ID D I ++ + W GE A+E L D F+
Sbjct: 195 NKQNEVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIE 247
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLE 306
+ + +Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+
Sbjct: 248 QSVCHYKVERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLD 306
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
EL+ RE + F ++ + + + S K + EH+ ++ QT P+
Sbjct: 307 ELL-WREFYQHILF---DFPHVSKHIPFKKDSQKIKWNHNPEHLTA---WQTGQTGIPIV 359
Query: 367 NASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A +++ G MH +RM A +++W G + + ++ IDG
Sbjct: 360 DAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAAN 411
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G W C G P F R N +KFD +G
Sbjct: 412 NGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG 445
>gi|421869192|ref|ZP_16300831.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia H111]
gi|358070832|emb|CCE51709.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia H111]
Length = 492
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 94/238 (39%), Gaps = 41/238 (17%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC----ALEARKARKLCPEAI 301
D FLT L Y R+ P +P A S LSP+L FG +S ++ A
Sbjct: 226 DAFLTTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADA 284
Query: 302 DTFLEELIVRRELADNFCFYQPNY--DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
D FL EL RE + ++ P D+ + ++ A R+ +++
Sbjct: 285 DKFLSELGW-REFSYTLLYHFPTLATDNFRAQFD---------AMPWRDDPAALRAWQRG 334
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEI 414
+T PL +A E+ G MH +RM A +++W G EA + D +
Sbjct: 335 RTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIKHLLIDWRAG--EA-----WFRDTL-V 386
Query: 415 DGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
D N W + CG P F R N +KFD DG AYV+R V
Sbjct: 387 DADPANNAASWQWVAGCGA-----DAAPYF---RIFNPVAQGQKFDPDG--AYVRRWV 434
>gi|417323068|ref|ZP_12109598.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
gi|328469264|gb|EGF40210.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
Length = 471
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 97/245 (39%), Gaps = 41/245 (16%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
WC S D +LK + F +R Y R+ P S LSPYL G +S ++C
Sbjct: 203 AWCASTND----ILKQLR-TFARERSDGYQMKRDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P +G +W D
Sbjct: 257 ARLYAENPQPDLSEGKATWLSE-IIWREFYQHLLVFEPKLVKGRGFIDW---------ED 306
Query: 346 KREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKI-LEWTTG 397
K + Y ++ FE T P+ +A+ ++ G MH +RM + AK + ++W G
Sbjct: 307 KIQWSYDEQAFECWKTGSTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLAKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
E Y K +DG G WS G +P F R N K
Sbjct: 367 EE-------YFMSKL-VDGDFAANNGGWQWSAST----GCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG 462
FD DG
Sbjct: 412 FDSDG 416
>gi|342877946|gb|EGU79364.1| hypothetical protein FOXB_10147 [Fusarium oxysporum Fo5176]
Length = 589
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 170/409 (41%), Gaps = 54/409 (13%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QL 79
S+D K+ VV+W D R+ DN AL A D+A + VP+ + + Q A R ++
Sbjct: 90 SIDVKKA-VVHWFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRV 148
Query: 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPN----FVRECGASLLVTDFS-PLREI 134
FMLR L +++ ++ + I ++ E +P+ + E GAS + + + E+
Sbjct: 149 DFMLRTLEVIKHDLAK-LDIPLYVETVEKRKRVPDRILELMDEWGASHVYANMEYEVDEL 207
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVP---VWVASEKLEYSAKT--LRGKINKLLPEYLI 189
RR I + + V VVP + + K +Y+ T R + + +
Sbjct: 208 RREASMIRDFAENGKAFEVVHDTCVVPPGELHTGAGK-QYAVYTPWYRSWVAHIHEN--L 264
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL-------- 241
D L +P EK + + D+ + + + P+ + E + L
Sbjct: 265 DLLELYEPPEKNPSSARK-DFAKLFDVEI---PDAPKSKRLDGEEKERLRSLWPCGEHEA 320
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKL-- 296
K D F + + NY RN P + S +S +L G ISA+ C AR K +KL
Sbjct: 321 KKRLDKFCEEMIGNYQKKRNIPTEA-GTSSISVHLASGTISARTCVRTARDRNKTKKLNG 379
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
E I T++ E + R+ + + P + K K S+ Y E F
Sbjct: 380 GNEGIQTWISE-VAWRDFYKHVLVHWP--------YVCMNKPFKPEYSNI-SWSYDNEHF 429
Query: 357 E---KAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTG 397
+ +T P+ +A+ ++ + G MH RM + AK +L+W G
Sbjct: 430 AAWCEGRTGFPIVDAAMRQLNHLGYMHNRCRMIVACFLAKDLLLDWRKG 478
>gi|423465178|ref|ZP_17441946.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
gi|402418939|gb|EJV51227.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
Length = 476
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 176/454 (38%), Gaps = 65/454 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNLALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G E+ I + + + + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGRTEEEIRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLE-GKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI K QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------IIPKPISK----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D E + F + +L Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFP-DQNVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 --YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
Y L KS + + E + T ++K +T P +A E+ G MH
Sbjct: 291 TVYKPL-------NKSFEHFPWNNEEELLTV--WQKGETGYPFIDAGMRELWQTGFMHNR 341
Query: 383 MRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
RM + K +L W G A + D +D N +G W V G
Sbjct: 342 ARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGA 389
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 390 DASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|417549253|ref|ZP_12200333.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-18]
gi|417563726|ref|ZP_12214600.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC143]
gi|395555482|gb|EJG21483.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC143]
gi|400387221|gb|EJP50294.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-18]
Length = 480
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 104/465 (22%), Positives = 186/465 (40%), Gaps = 66/465 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRN- 92
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 93 --IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF----SPLREIRRCKDKICNRVS 146
I I + E + I +F ++ + + + L+ + +D +
Sbjct: 67 AAIHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHGK 126
Query: 147 DSVTIHE----------VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE-YLIDYPMLE 195
+ H+ + V+ A +K Y+ G LP+ Y + E
Sbjct: 127 ELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQNE 181
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
P++ G ++ID D I ++ + W GE A+E L D F+ + + +
Sbjct: 182 VPLDFLQG--ENIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVCH 234
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIVR 311
Y +R+ P + S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 235 YKLERDFP-HIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL-W 292
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RE + F ++ + + + S K + EH+ ++ QT P+ +A
Sbjct: 293 REFYQHILF---DFPHVSKHIPFKKDSQKIKWNHNPEHLTA---WQTGQTGIPIVDAGMR 346
Query: 372 EMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 347 QLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGWQ 398
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 399 W--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
Length = 471
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 101/258 (39%), Gaps = 46/258 (17%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
WC S D +LK + F +R Y R+ P S LSPYL G +S ++C
Sbjct: 203 AWCASTND----ILKQLR-TFARERSDGYQMKRDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P +G +W D
Sbjct: 257 ARLYAENPQPDLSEGKATWLSE-IIWREFYQHLLVFEPKLVKGRGFIDW---------ED 306
Query: 346 KREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
K + Y ++ FE T P+ +A+ ++ G MH +RM A + ++W G
Sbjct: 307 KIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
E Y K +DG G WS G +P F R N K
Sbjct: 367 EE-------YFMSKL-VDGDFAANNGGWQWSAST----GCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG-----YIAYVKRI 470
FD DG ++ +KR+
Sbjct: 412 FDSDGQFVRHWVPEIKRV 429
>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
Length = 477
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 112/490 (22%), Positives = 183/490 (37%), Gaps = 84/490 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV----AFNLFDQFLGAKARQLGFMLRGL 86
V++W RD R+ DN L+ A Q + V V N + +L F++ L
Sbjct: 6 VLFWHRRDLRLADNLGLVVAA-QISPAVTGVYVLDPAVINPPPELPPMAPARLWFLIESL 64
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
LQ+ E L + +G+ +P ++ A +V + R++ K +V+
Sbjct: 65 VELQQRWREAGSRL-LVVEGDPVAVLPQVAQQISAEAVVWN----RDVEPYARKRDRQVA 119
Query: 147 DSVTIHEVDAHNVVPVW----VASEKLEYSA-----------KTLRGKI------NKLLP 185
++ + D VV W +A E L+ A + RG++ P
Sbjct: 120 KTL---QADGRRVVADWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGQVLAQKPATVAAP 176
Query: 186 EYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
L+D P P D + A G + EI C GE AA+E L
Sbjct: 177 TGLVDLPPELMPAG-----------DPLPALRESHGFQGSEICPCRPGEAAALEQLT--- 222
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR--CALEARKARKLCPEAIDT 303
F L Y DRN P S LS L G +S ++ CA + + + E +
Sbjct: 223 -TFCNGPLLGYEPDRNFP-GTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEQLQA 280
Query: 304 FL--EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
E+ + RE FY P +W R +++ E + + +++ QT
Sbjct: 281 IAVWEQELGWREFYQQALFYFPELADGPYREQWRRFPWENN-----EDWF--DFWKEGQT 333
Query: 362 ADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDG 416
P+ +A+ ++ G MH RM Y K ++ +W G + + E+DG
Sbjct: 334 GMPIIDAAMRQLNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMEL--------EVDG 385
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
G WS G +P +R N + KFD G Y++R V +
Sbjct: 386 DLAANNGGWQWSASS----GMDTKP----LRIFNPATQASKFDSAG--DYIRRWVPELRH 435
Query: 477 RRADSLVSGK 486
L+SG+
Sbjct: 436 VNTKDLLSGE 445
>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|423586430|ref|ZP_17562517.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|401229948|gb|EJR36456.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
Length = 476
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 177/455 (38%), Gaps = 59/455 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQEETFS--IGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPFSRVQSIKWGNSLP 173
Query: 216 AVLRKG--AEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ KS + +K E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TVYKPLNKSFEHFPWNKEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
P F R N KFD +G Y++R V K
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRRWVPELK 422
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 118/478 (24%), Positives = 174/478 (36%), Gaps = 94/478 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
P+V W D R+ D+ AL+ AV P+ + L D K ++G ++ +
Sbjct: 5 PIVLWFRNDLRLGDHAALVAAV----HTGAPILPLYILDDA--SPKQWKMGGASHWWLDK 58
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREI--RRCKDK 140
L L ++ L L +G++E + + E GA+ + + P +R K K
Sbjct: 59 SLAALAGDLASRGGPLV-LRRGDSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTK 117
Query: 141 I------CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT--LRGKINKLLPEYLIDYP 192
+ C R + D S Y T R + L+P + P
Sbjct: 118 LDDANVACRRFGGRLLREPEDMRT-------SNGGFYKVYTPFSRAIMKDLVPAKSVRAP 170
Query: 193 -----MLEQP----IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
+ +QP + W Q DW AA + GE A + L
Sbjct: 171 ERIATLEKQPKSERLRDWALHPQKPDWSKGFAAA------------WQPGEAGARKRLSD 218
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCPEA 300
F+ LK+Y DRN P P S LSP+L FG+IS C A A A
Sbjct: 219 ----FVRTALKSYARDRNCPATP-GTSRLSPHLAFGEISPAACWHAAAHAGGKTNGSDNA 273
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK--EQFEK 358
+TFL+EL+ RE + F+ P E + + S H K + ++
Sbjct: 274 AETFLKELLW-REFSAGLLFHFP---------ELPEEPFRPEFSAFPWHGNAKHLKAWQT 323
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE-----WTTGPEEALAIAIYLNDKYE 413
QT P+ +A E+ G MH +RM A +++ W TG + D
Sbjct: 324 GQTGYPIVDAGMRELWATGYMHNRVRMITASFLIKHLLIPWQTG-------EAWFWDTL- 375
Query: 414 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+D N W V G P F R N KFD DG YV+R V
Sbjct: 376 VDADLANNSANWQW----VAGSGADAAPYF---RIFNPVLQGEKFDPDG--DYVRRWV 424
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 115/489 (23%), Positives = 182/489 (37%), Gaps = 88/489 (17%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-FDQFLGAKARQLGFMLRGLR 87
GP ++W RD R+ DN L AV + V V + A AR+ F+L LR
Sbjct: 2 GPWLFWHRRDLRLADNLGLA-AVSAITPEVMGVFVLDPAELEHPTMAPARRW-FLLESLR 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPL-----REIRRCKDK 140
LQ+ + L L +G + +P ++ GA+ + D PL RE+
Sbjct: 60 ELQQRWRQAGSQL-LLLEGNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAALKA 118
Query: 141 ICNRVS----------DSVTIHEVDAHNVV-PVWVASEKLEYSAKTLRG--KINKLLPEY 187
I RV+ + + D + V P W + EK + AK + ++ LL
Sbjct: 119 IGVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEK-QPKAKPVPAPSELKALLKPD 177
Query: 188 LIDYPML-EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
L P+L E P+E W G ++ C GE AA+E L +
Sbjct: 178 LSGLPVLNEVPVEPWEGA---------------------DLCPCRPGETAALEQL----E 212
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC-----PEAI 301
F + +++Y RN P S LS L G +S + + C +++
Sbjct: 213 HFAARAMEHYCEGRNLPGD-EGTSTLSAALRAGSLSPRTAWAASLDVWSHCRSDEQRQSV 271
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+ +EL RE F+ P +W + +D + ++ T
Sbjct: 272 TVWQQEL-AWREFYQQALFHFPELADGPYRPQWRQFPWEDDP-------VRLKAWQDGLT 323
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDG 416
P+ +A+ ++V G MH RM A I +W G EA +A +E+DG
Sbjct: 324 GVPIVDAAMRQLVQTGFMHNRCRMIVASFLVKDLICDWRHG--EAFFMA------HEVDG 375
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
G WS G +P +R N KFD + Y++R +
Sbjct: 376 DLAANNGGWQWSASS----GMDPKP----LRIFNPFTQASKFDPEA--TYIRRWLPELAH 425
Query: 477 RRADSLVSG 485
L+SG
Sbjct: 426 INTKDLISG 434
>gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
Length = 494
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 94/238 (39%), Gaps = 41/238 (17%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC----ALEARKARKLCPEAI 301
D FLT L Y R+ P +P A S LSP+L FG +S ++ A
Sbjct: 228 DAFLTTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADA 286
Query: 302 DTFLEELIVRRELADNFCFYQPNY--DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
D FL EL RE + ++ P D+ + ++ A R+ +++
Sbjct: 287 DKFLSEL-GWREFSYTLLYHFPTLATDNFRAQFD---------AMPWRDDPAALRAWQRG 336
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEI 414
+T PL +A E+ G MH +RM A +++W G EA + D +
Sbjct: 337 RTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIKHLLIDWRAG--EA-----WFRDTL-V 388
Query: 415 DGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
D N W + CG P F R N +KFD DG AYV+R V
Sbjct: 389 DADPANNAASWQWVAGCGA-----DAAPYF---RIFNPVAQGQKFDPDG--AYVRRWV 436
>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
53653]
gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
53653]
Length = 445
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 99/261 (37%), Gaps = 41/261 (15%)
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
++A+ G+ P G E GE A L D +L L Y DR + L A S LS
Sbjct: 185 LSALSLLGSGSPSPGLPEGGERAGRRRL----DAWLRSGLGAY-ADRQDDLAGDATSRLS 239
Query: 274 PYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
PYLHFG +S +ARK D F+ +L R +F ++ L +
Sbjct: 240 PYLHFGCLSPVEL---VHRARKSGGPGADAFVRQLAWR-----DF-----HHQVLAARPD 286
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-- 391
+ + R ++ +T P+ +A ++ G MH R+ A +
Sbjct: 287 ASHTDYRPRGDRWRSDDAAVAAWKAGRTGYPIVDAGMRQLAAEGWMHNRARLLVASFLTK 346
Query: 392 ---LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
++W G L + +DG N + W V G RP R
Sbjct: 347 TLYVDWRVGARHFLDLL--------VDGDVANNQLNWQW----VAGTGTDTRP----NRV 390
Query: 449 MNYSGCKRKFDVDGYIAYVKR 469
+N R+FD DG YV+R
Sbjct: 391 LNPLAQARRFDPDG--TYVRR 409
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 146/402 (36%), Gaps = 75/402 (18%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFMLRG 85
+ W D R+ D+ AL AV K PV F L D LG +R ++ +
Sbjct: 9 TIVWFRNDLRLCDHPALTAAV----KRGGPVIALFVLDDAAAGCWKLGGASRW--WLAKS 62
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSP----LRE------ 133
L L +I + L L +G+ E + V E GA+ + + P L E
Sbjct: 63 LEALSHDIAQRGARLI-LRRGDTESILKRLVDESGATAVYVTRGYEPWAKGLEEKLHKSF 121
Query: 134 ------IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
+R ++ D T P W K E+SA L P
Sbjct: 122 GGSGVVFKRFGGRLLREPEDLRTSSGAAYQVFTPFWRVFRK-EFSAPKALAAPRHLGP-- 178
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
+ + I W DW +A R G E A LK
Sbjct: 179 -VPDAIASDDISDWKLAPTKPDWSGGLAEAWRPG------------ERGAQLRLKN---- 221
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE---AIDTF 304
F+++ L NY R+ L S LSP+L FG+IS C A +A A++TF
Sbjct: 222 FVSEGLSNYDDGRDR-LNAEGTSRLSPHLAFGEISPAACWRAAAEASHQTHSSDGAVETF 280
Query: 305 LEELIVRR-ELADNFCFYQPNYDSLK---GAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
L+EL R A F F Q + L+ A+ WA+ S A +++
Sbjct: 281 LKELAWREFSYALLFQFPQMPDEPLRDEFAAFPWAKSSANLKA------------WQRGL 328
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTG 397
T P+ +A E+ G MH RM A +L WT+G
Sbjct: 329 TGYPVVDAGMRELWATGYMHNRARMIAASFLTKHLLLPWTSG 370
>gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
Length = 471
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 96/240 (40%), Gaps = 38/240 (15%)
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTF 304
GF +R Y +R+ P S LSPYL G +S ++C L A E T+
Sbjct: 217 GFTRERSDAYQAERDFP-AVDGTSQLSPYLAIGALSPRQCIARLHAENPHTDLTEGKATW 275
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK---AQT 361
L E I+ RE + ++P +G +W DK E Y + FE+ T
Sbjct: 276 LSE-IIWREFYQHLLVFEPKLVKGQGFIQW---------EDKIEWSYDEVAFERWSNGTT 325
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDG 416
P+ +A+ ++ G MH +RM A + ++W G A +++ + D
Sbjct: 326 GYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGE------AYFMSKLVDGDF 379
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
NG G WS G +P F R N KFD DG +V+ V K+
Sbjct: 380 AANNG--GWQWSAS----TGCDGQPYF---RIFNPISQGEKFDHDG--TFVRHWVPEIKQ 428
>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
Length = 469
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
E ++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FETIRNQLRDFCRERVQDYHQWRDFPART-GTSSLSPYLAIGALSARQCVARLYRESAMG 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+ E +L ELI RE + +PN + EW H +H E+
Sbjct: 265 VLGEGAQVWLSELIW-REFYQHLVAREPNLSKSRDFHEWG-----SHLEWWNDH----EK 314
Query: 356 FEK---AQTADPLWNASQMEMVYNGKMHGFMRM 385
F++ QT P+ +A+ ++ G MH +RM
Sbjct: 315 FQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
Length = 487
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 83/384 (21%), Positives = 149/384 (38%), Gaps = 65/384 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNN--VPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
V+ W D R+ DN AL A++ A ++ +P+ + ++ + L
Sbjct: 6 VIMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQSLAS 65
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
L + + Q LFQG+ I + + + A+ ++ + + P + R K +
Sbjct: 66 LSASTGQHLQ----LFQGDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHIKAT--LK 119
Query: 147 DSVTIHEVDAHNVVPVWVASEKLE--------YSAKTLRGKINKLLPEYLIDYPMLEQPI 198
D V + + H + W + L+ ++ +G + + P Y P
Sbjct: 120 DCVEVLSCNGHLL---WEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIP------ 170
Query: 199 EKWTGTRQSIDWDSIIAAV-------LRKGAEVPEIGWCESGEDAAMEVLKGSKD---GF 248
+ + W + I + L + +P I W ++ +G+KD +
Sbjct: 171 -------EHLPWATRINSTNIFEPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATY 223
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP--EAIDTFLE 306
+ + Y DRN P + S LSP+LHFG+IS + A K P E DT+L
Sbjct: 224 IEEAAGRYREDRNLPAV-KGTSLLSPHLHFGEISVNTVWYAIKDAFKDDPENEHADTYLS 282
Query: 307 ELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
EL RE + F+ P N+ S + W R S ++ + ++ T
Sbjct: 283 EL-GWREFSHYLLFHFPHIQTENFSSKFNVFPW-RSSPEE-----------LKAWQFGNT 329
Query: 362 ADPLWNASQMEMVYNGKMHGFMRM 385
P+ +A E+ G MH +RM
Sbjct: 330 GIPIVDAGMRELYQTGYMHNRVRM 353
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 110/276 (39%), Gaps = 54/276 (19%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC----- 286
SGE+ A ++L D +++L NY DR+ P S LSP+L FG I + C
Sbjct: 204 SGEEIAQKLLTEFCD---SQKLYNYKKDRDFPAI-DGTSNLSPHLRFGTIGIRDCWAATV 259
Query: 287 ------------ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEW 334
+ R A+KL E I T+ +EL RE + F+ P + A+
Sbjct: 260 AVMIDAEADITSEQDQRNAQKL--EGIQTWRQEL-AWREFYQHVLFHFPQLS--QSAY-- 312
Query: 335 ARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK----- 389
R ++ A D+ + + + +T P+ +A+ ++ G MH RM A
Sbjct: 313 -RPQMQRFAWDQNHEYF--QAWSNGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKD 369
Query: 390 KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYM 449
IL W G +Y K IDG G WS G +P +R
Sbjct: 370 LILNWQWG-------ELYFMQKL-IDGDLAANNGGWQWSASS----GMDTQP----LRIF 413
Query: 450 NYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSG 485
N S KFD +G Y++R + L+SG
Sbjct: 414 NPSSQALKFDPEG--TYIRRWLPELVHLTTAELLSG 447
>gi|359394409|ref|ZP_09187462.1| Deoxyribodipyrimidine photo-lyase [Halomonas boliviensis LC1]
gi|357971656|gb|EHJ94101.1| Deoxyribodipyrimidine photo-lyase [Halomonas boliviensis LC1]
Length = 474
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 110/252 (43%), Gaps = 51/252 (20%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--ALE 289
+GE+AA + L FL R ++Y R+ P K R S LSPYL G IS ++C A+
Sbjct: 204 AGENAAADNLAR----FLRFRGRHYSAQRDLP-KVRGTSELSPYLALGVISHRQCLQAVM 258
Query: 290 ARKARKLCPEAI--DTFLEELIVR---RELADNF---CFYQPNYDSLKG-AWEWARKSLK 340
A L I T++ EL+ R + +A F C YQP + K AW
Sbjct: 259 AENGGNLADGDIGLTTWVNELVWREFYQHVAVGFPQVCRYQPFQEHTKQLAWR------- 311
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-EWT 395
D E + + + QT P+ +A+ ++V G MH +R M+ +K +L +W
Sbjct: 312 ----DDNEGF---QAWCEGQTGYPIVDAAMRQLVATGWMHNRLRMITAMFLSKHLLIDWR 364
Query: 396 TGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCK 455
G EA + ++ IDG G W+ G P F R N +
Sbjct: 365 RG--EAFFM------RHLIDGEFCANNGGWQWAAS----TGTDAAPYF---RIFNPTTQS 409
Query: 456 RKFDVDG-YIAY 466
+FD +G +IA+
Sbjct: 410 TRFDAEGEFIAH 421
>gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24]
Length = 478
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 99/254 (38%), Gaps = 43/254 (16%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE +VLK FL + L NY R+ P K A+S LSPYLHFG++S +
Sbjct: 205 GERGGEQVLKL----FLERGLCNYKIGRDFPDK-EAVSRLSPYLHFGELSPNYVWHKVNN 259
Query: 293 ARKLCPEAIDTFLEEL---IVRRELADNFCFYQPN--YDSLKGAWEWARKSLKDHASDKR 347
L E I+T E +V RE + + Y P+ Y +L + D K
Sbjct: 260 FAVL--ENIETQAEHFHRELVWREFSYSLIHYFPDLTYRNLN-------RRFDDFPWKKN 310
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEAL 402
+ K + T PL +A E+ G MH +RM A +++W G E
Sbjct: 311 DQFMKK--WRTGMTGYPLIDAGMRELASTGYMHNRVRMITASFLVKNLLIDWRNGAE--- 365
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ D ID N W V G P F R N +KFD D
Sbjct: 366 ----WFWDSL-IDADLANNSCSWQW----VAGSGADAAPYF---RIFNPVTQSKKFDPDA 413
Query: 463 YIAYVKRIVGGTKK 476
Y++R + +K
Sbjct: 414 --KYIRRWITELEK 425
>gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
Length = 471
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 113/473 (23%), Positives = 181/473 (38%), Gaps = 79/473 (16%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLRL 88
P++ W RD R+ DN L A + +P+ + + + LGA + +LG G+
Sbjct: 6 PLILWFRRDLRLADNPMLAEAA-ATGRPLIPLFI-LDPETEALGAAPKWRLGL---GVEA 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR-RCKDKICNRVSD 147
R +E L L +G A + V E GA+ + +S L E R +D+
Sbjct: 61 FARALEGLGSRLV-LRRGPALAVLEALVAETGAAGV--HWSRLWEPAWRARDEGVKAGLR 117
Query: 148 SVTIHEVD--AHNVVPVWVASEKLEYSAKTLRGKINKLLPEY---LIDYPM--------- 193
I H + W +T +G ++ + + D P+
Sbjct: 118 QAGIEAASHAGHTIFEPW--------EVETGQGGFYRVYTPFWKAVKDRPVAASFPPPAR 169
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV--PEIGWCESGEDAAMEVLKGSKDGFLTK 251
L P E W + + WD + + +GA V P + GE AA E L F++
Sbjct: 170 LPSPAE-WPVSERLASWD--LGRAMNRGAAVVAPHLA---VGEAAAAERLTR----FMSG 219
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
L Y +R+ P P S LS L +G+ISA+ +AR + FL+EL
Sbjct: 220 PLDRYAAERDRPDAP-VTSRLSENLTYGEISARSLWHAGMRARAEGRAGAEKFLQEL-AW 277
Query: 312 RELADNFCFYQPNYD--SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
RE + ++ P + +G W+ A R E++ + T +P +A+
Sbjct: 278 REFGWHLLYHTPEIARRNWRGDWD---------AFPWRGDNPDAERWRRGMTGEPFVDAA 328
Query: 370 QMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
E+ G MH R+ Y K +L +W G + D ID + +G
Sbjct: 329 MRELFVTGTMHNRARLIAGSYLTKHLLTDWRVG-------KAWFEDCL-IDWDPASNALG 380
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
W V G P F R N + KFD + AY +R + +R
Sbjct: 381 WQW----VAGSGPDASPYF---RIFNPATQAEKFDPES--AYRQRFLAEIARR 424
>gi|449145685|ref|ZP_21776486.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
gi|449078633|gb|EMB49566.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
Length = 469
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
EV++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESAMS 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
E +L ELI RE + +PN + EW + + S+K ++
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEK------FQR 317
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + QT P+ +A+ ++ G MH +RM
Sbjct: 318 WCEGQTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|402556671|ref|YP_006597942.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
gi|401797881|gb|AFQ11740.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
Length = 476
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 101/453 (22%), Positives = 175/453 (38%), Gaps = 63/453 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAIIDVQKQLK-A 63
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
F + +G+ ++ I + + + + + + + + K+ + D + E +
Sbjct: 64 LGATFIIRKGKTQEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMILEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K T QSI W S +
Sbjct: 124 SHLLLEPWMIKKKDNTEYKVFTPFYNAFQ----------KQAIPKPTSKVQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC---ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W ES + E + F + +L Y R+ P S
Sbjct: 174 ASLSVSELHLLPTIPWTYHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFP-NQNVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN- 324
L+PYL FGQIS + L + K C + +++F+ + I RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYHYPFT 291
Query: 325 -YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
Y L K+ + + E + ++K +T P +A E+ G MH
Sbjct: 292 VYKPL-------NKNFEHFPWNNEEELL--RVWQKGKTGYPFIDAGMRELWQTGFMHNRA 342
Query: 384 RM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWK 438
RM + K +L W G A + D +D N +G W V G
Sbjct: 343 RMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGAD 390
Query: 439 ERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD DG Y+++ +
Sbjct: 391 ASPYF---RIFNPITQGEKFDKDG--EYIRKWI 418
>gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
Length = 458
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 143/367 (38%), Gaps = 41/367 (11%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ-----FLGAKARQLGFML 83
PV+ W +D R+ D ALI A + PV + L D +G +R ++
Sbjct: 3 APVLLWFRQDLRLSDQAALIAAASEG-----PVVPVYVLDDDTPRQWVMGGASRW--WLH 55
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
L L R + E L L +G++ D + +ECGA V R +K
Sbjct: 56 HSLASLDRALREKGSRLT-LRRGKSADVLQALAKECGAGR-VHALHHYEPWWRNAEKAVA 113
Query: 144 RVSDSVTIHEVDAHNVVP---VWVASEKLEYSAKT--LRGKINKLLPEYLIDYPMLEQPI 198
+ D + +H D ++P V S + Y T R + ++ P P
Sbjct: 114 KALD-LCLH--DGILLLPPGAVRTGSGGI-YKIYTPFARAVMEQMPPAAPNRTPATIDAP 169
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
E W T + DW + G + GED A + + F+ + + +YPT
Sbjct: 170 ESWPETDRLSDWGLLPTKPDWAGGFKKD---WTPGEDGA----RANVAAFIDE-VGDYPT 221
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
RN P S LSP+LH+G++S + + FL+ELI R
Sbjct: 222 GRNLP-SVEGTSRLSPHLHYGEVSPAYVWHRVTASNADA----EIFLKELIWRDYTHTQI 276
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
C P Y S ++ R +D + + + ++K +T P+ +A ++ G
Sbjct: 277 C-EMPAYGSKNARDDFDRMDWRDLREARGDFV----AWKKGRTGYPIVDAGMRQLWTTGW 331
Query: 379 MHGFMRM 385
MH +RM
Sbjct: 332 MHNRVRM 338
>gi|385680952|ref|ZP_10054880.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis sp. ATCC 39116]
Length = 433
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 41/257 (15%)
Query: 223 EVPEIG---WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFG 279
E P++G GE AA EV + FL L Y TDR+ P +P A + LSPYL +G
Sbjct: 164 EKPDLGSMTLPRPGEAAAHEVW----EKFLDGGLDGYATDRDRPDRP-ATTRLSPYLRWG 218
Query: 280 QISAQR--CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
I + L+ R + +++ EL R AD ++P E AR+
Sbjct: 219 CIHPRTLLADLDTRHGKD-----VESLRSELAWREFYAD-VLHHRP---------ETARE 263
Query: 338 SLKDHASDKREHIYTKEQFEK---AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEW 394
+ D DK + +E F++ +T P+ +A +++ G MH +RM A +++
Sbjct: 264 NY-DKRFDKLAYDTDQESFDRWRDGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLVKD 322
Query: 395 TTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGC 454
P L ++N + +DG + + W V G P F R N +
Sbjct: 323 LHQP-WWLGARHFMN--HLVDGDLASNQLNWQW----VAGTGTDPAPFF---RVFNPTTQ 372
Query: 455 KRKFDVDGYIAYVKRIV 471
KFD DG AYV++ V
Sbjct: 373 GEKFDPDG--AYVRKYV 387
>gi|444370664|ref|ZP_21170306.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia K56-2Valvano]
gi|443596999|gb|ELT65453.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia K56-2Valvano]
Length = 435
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 94/238 (39%), Gaps = 41/238 (17%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC----ALEARKARKLCPEAI 301
D FLT L Y R+ P +P A S LSP+L FG +S ++ A
Sbjct: 169 DAFLTTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADA 227
Query: 302 DTFLEELIVRRELADNFCFYQPNY--DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
D FL EL RE + ++ P D+ + ++ A R+ +++
Sbjct: 228 DKFLSELGW-REFSYTLLYHFPTLATDNFRAQFD---------AMPWRDDPAALRAWQRG 277
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEI 414
+T PL +A E+ G MH +RM A +++W G EA + D +
Sbjct: 278 RTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIKHLLIDWRAG--EA-----WFRDTL-V 329
Query: 415 DGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
D N W + CG P F R N +KFD DG AYV+R V
Sbjct: 330 DADPANNAASWQWVAGCGA-----DAAPYF---RIFNPVAQGQKFDPDG--AYVRRWV 377
>gi|350532818|ref|ZP_08911759.1| deoxyribodipyrimidine photolyase [Vibrio rotiferianus DAT722]
Length = 471
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 96/239 (40%), Gaps = 38/239 (15%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTFL 305
F +R Y +R+ P S LSPYL G +S+++C L A E T+L
Sbjct: 218 FARERSDAYKAERDRP-AADGTSQLSPYLAIGALSSRQCIARLYAESPHSELTEGKATWL 276
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD-- 363
E I+ RE + ++P KG W DK E Y + FE+ +T
Sbjct: 277 SE-IIWREFYQHLLVFEPKLVKGKGFIPW---------EDKIEWSYDETAFERWKTGTTG 326
Query: 364 -PLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGR 417
P+ +A+ ++ G MH +RM A + ++W G A +++ + D
Sbjct: 327 YPIVDAAMRQLNETGWMHNRLRMIVASFLTKDLHIDWRWGE------AYFMSKLVDGDFA 380
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
NG G WS G +P F R N KFD DG +V+ V K+
Sbjct: 381 ANNG--GWQWSAS----TGCDGQPYF---RIFNPISQGEKFDSDG--TFVRHWVPEIKE 428
>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 476
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 104/459 (22%), Positives = 180/459 (39%), Gaps = 70/459 (15%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL AV +P+ + F +G+ A+ ++ + +++ +
Sbjct: 8 MFQKDFRLYDNPALFEAVQSGEV--LPIYIQDETFS--IGSAAK--WWLHHAIIDIKKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTI 151
E L + +G ++ I + +++ + + + + P R K K+ +
Sbjct: 62 EALGSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIIC 119
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD 211
E ++H ++ W+ +K K N +Q I K T QSI W
Sbjct: 120 KEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPTSKVQSIKWG 169
Query: 212 SIIAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
S + A L +P I W + E+ A +V K F + +L Y R+
Sbjct: 170 SSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKK----FFSSKLAFYSEGRDF 225
Query: 263 PLKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADN 317
P A S L+PYL FGQI + L + + C + + +F+ +LI RE +
Sbjct: 226 P-NQNAHSMLAPYLSFGQIPVKLMYHYLINKSTERQCSLFEKQVISFIRQLI-WREFSYY 283
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
++ P ++ K+ + +K E + ++K +T P +A E+ G
Sbjct: 284 LLYHYPF-----TVYKPLNKNFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTG 336
Query: 378 KMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MH RM + K +L W G A + D +D N +G W V
Sbjct: 337 FMHNRARMAVASFLVKHLLISWQEG-------AKWFMDTL-LDADIANNTMGWQW----V 384
Query: 433 HDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y+++ V
Sbjct: 385 AGSGADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
Length = 475
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 146/373 (39%), Gaps = 50/373 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V++W +D R+ DN AL AV Q + + + N + +G +R ++ L L
Sbjct: 6 VIHWFRQDLRLSDNPALSAAVSQGDVLPIYILDDKNANEFAMGGASR--WWLHHSLTALD 63
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
++ L++GE + + + + +V + + P R R D+ +
Sbjct: 64 ASLTACLN----LYKGEPLEVLLELIERLDVTHVVWNRCYEPWRMQR---DEKIKQTLKE 116
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL----IDYPMLEQPIEKWTGT 204
+ I +V ++N +W + K G K+ + + M QP+ +
Sbjct: 117 IGI-QVQSYNASLLWEP-----WQIKKPDGTAYKVFTPFYRKGCLKAEMPRQPLPR--PD 168
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLTKRLKNYP 257
Q++ L +P I W E GED A FL + L +Y
Sbjct: 169 NQAVYLKDDKGQALDGLNLLPTIAWDEPFKDLWQIGEDKAQSQFFK----FLEEGLASYK 224
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
RN P KP ++ LSP++HFG+IS + + E +D F EL RE + +
Sbjct: 225 EGRNIPSKP-FVTRLSPHIHFGEISPNQLWYGVQSVAD--NEHVDHFCSEL-GWREFSYS 280
Query: 318 FCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
F P N S A+ W + S R +++ +T P+ +A E
Sbjct: 281 QLFVNPSLPTHNLQSKFDAFPWREEDTSSKDSLLRA-------WQQGKTGIPMVDAGMRE 333
Query: 373 MVYNGKMHGFMRM 385
+ G MH +RM
Sbjct: 334 LWQTGYMHNRVRM 346
>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|423379068|ref|ZP_17356352.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|423442112|ref|ZP_17419018.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|423534525|ref|ZP_17510943.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
gi|423540200|ref|ZP_17516591.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|423546432|ref|ZP_17522790.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|423623773|ref|ZP_17599551.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|401173735|gb|EJQ80947.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|401181001|gb|EJQ88155.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|401257696|gb|EJR63893.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|401633514|gb|EJS51291.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|402416068|gb|EJV48387.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|402462942|gb|EJV94645.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
Length = 476
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 177/454 (38%), Gaps = 65/454 (14%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G E+ I + + + + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGRTEEEIRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLE-GKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI K QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------IIPKPISK----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D E + F + +L Y R+ P +
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQ-NVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 --YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
Y L KS + + E + T ++K +T P +A E+ G MH
Sbjct: 291 TVYKPL-------NKSFEHFPWNNEEELLTV--WQKGETGYPFIDAGMRELWQTGFMHNR 341
Query: 383 MRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
RM + K +L W G A + D +D N +G W V G
Sbjct: 342 ARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGA 389
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 390 DASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
Length = 486
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 115/481 (23%), Positives = 185/481 (38%), Gaps = 83/481 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD--QFL--GAKARQLGFMLRGL 86
+ W D R DN AL A +QAN N+P+ +AF + Q+L A Q+ F+LR L
Sbjct: 7 LAVWFRSDLRCHDNRALSRAAEQANAQNLPL-IAFYIATPKQWLEHDVSALQVDFILRHL 65
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRE-CG----ASLLVTDFSPLREIRRCKDKI 141
+LQ + +QI F ++ + +P + E C L P+ EI+R +
Sbjct: 66 PILQTQLAR-YQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNEIQRDQRVA 124
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY------------LI 189
S S+ H D ++ S +T +G K+ + +
Sbjct: 125 RTLESTSIETHFFDDFTLL--------APGSVRTGQGDPYKVFTPFKKQCFKQLQEADIA 176
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ P E + QS +S+ + E W +GE AA+E L + F
Sbjct: 177 EAPTARIEAEAPSHFAQSPP-ESLADFAPHLDTKTLEHLW-PAGESAALERL----ETFA 230
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK----LCPEAIDTFL 305
RL +Y R+ P + S +S YL G +S + A +A + E T++
Sbjct: 231 EHRLHHYQQRRDYP-NAKGTSAISAYLAIGSLSPRAAMRAATRANQGEWTSGSEGAQTWI 289
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ----- 360
EL+ R FYQ + R S E+I ++ E Q
Sbjct: 290 SELLWRD-------FYQHILTAFP------RVSRGRAFQPHTENIVWRDDPEAFQAWCEG 336
Query: 361 -TADPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-EWTTGPEEALAIAIYLNDKYEI 414
T P+ +A+ +++ G MH +R M+ +K +L +W G + Y + I
Sbjct: 337 RTGIPIVDAAMRQLLQTGWMHNRLRMVTAMFLSKNLLIDWRRGEQ-------YFRRQL-I 388
Query: 415 DGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGT 474
DG G W+ D P F R N ++FD DG A+++ V
Sbjct: 389 DGELGANNGGWQWAASTGTDAA----PYF---RIFNPVTQGQRFDKDG--AFIRHYVPEL 439
Query: 475 K 475
K
Sbjct: 440 K 440
>gi|417555402|ref|ZP_12206471.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-81]
gi|417562323|ref|ZP_12213202.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC137]
gi|421199029|ref|ZP_15656194.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC109]
gi|421454809|ref|ZP_15904156.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-123]
gi|421631891|ref|ZP_16072554.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-13]
gi|421806039|ref|ZP_16241912.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-694]
gi|395524905|gb|EJG12994.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC137]
gi|395565925|gb|EJG27572.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC109]
gi|400212599|gb|EJO43558.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-123]
gi|400391819|gb|EJP58866.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-81]
gi|408710437|gb|EKL55663.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-13]
gi|410407513|gb|EKP59497.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-694]
Length = 480
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 187/465 (40%), Gaps = 66/465 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETF------------QILFFLFQGEAEDNIPNFVR--ECGASLLVTDFSPLREI-RRCK 138
+I F+ + NI N E G + L D + + R K
Sbjct: 67 SALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHGK 126
Query: 139 DKICNRVSDSVTIHEVDAHNVVP--VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPMLE 195
+ + + + P V+ A +K Y+ G LP+ Y + E
Sbjct: 127 ELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQNE 181
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
P++ G ++ID D I ++ + W GE A+E L D F+ + + +
Sbjct: 182 VPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEQSVCH 234
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIVR 311
Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 235 YKVERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL-W 292
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 293 REFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQMGQTGIPIVDAGMR 346
Query: 372 EMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 347 QLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------RHLIDGDLAANNGGWQ 398
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 399 W--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 111/282 (39%), Gaps = 59/282 (20%)
Query: 213 IIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
+ + VL+ +P I W GE A + L F+ L +Y +R+ P+K
Sbjct: 173 VQSEVLKDWKLLPAINWAAQFSEYWTPGEAGAQQKLHE----FIEHHLNDYKKNRDFPIK 228
Query: 266 PRALSGLSPYLHFGQISAQRCALEARKARKLCP----EAIDTFLEELIVRRELADNFCFY 321
A S LSP+LHFG+IS L A + KL P + D FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPW-TILRAIELAKLNPNCDLSSADHFLSEL-GWREFSVYLLYH 285
Query: 322 QP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
P N+ S A+ W +DK +++ T P+ +A E+
Sbjct: 286 FPKLPYENFRSEFDAFPW--------HNDKE----LLARWQNGLTGYPIIDAGMRELWAT 333
Query: 377 GKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SIC 430
G MH +RM A +++W G + L +D N W + C
Sbjct: 334 GYMHNRVRMIVASFLTKGLLIDWRLGADWFLDTL--------VDADLANNSASWQWVAGC 385
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
G P F R N +KFD DG+ Y++ V
Sbjct: 386 GA-----DAAPYF---RIFNPVLQSQKFDPDGH--YIRHWVS 417
>gi|417870325|ref|ZP_12515291.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH1]
gi|417881807|ref|ZP_12526117.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH4]
gi|421689632|ref|ZP_16129312.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-143]
gi|421791224|ref|ZP_16227401.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-2]
gi|424062524|ref|ZP_17800010.1| hypothetical protein W9M_03346 [Acinetobacter baumannii Ab44444]
gi|445477091|ref|ZP_21454066.1| deoxyribodipyrimidine photolyase / FAD binding domain of DNA
photolyase multi-domain protein [Acinetobacter baumannii
Naval-78]
gi|342228012|gb|EGT92917.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH1]
gi|342238562|gb|EGU02993.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH4]
gi|404557798|gb|EKA63093.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-143]
gi|404671476|gb|EKB39319.1| hypothetical protein W9M_03346 [Acinetobacter baumannii Ab44444]
gi|410403261|gb|EKP55358.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-2]
gi|444776598|gb|ELX00636.1| deoxyribodipyrimidine photolyase / FAD binding domain of DNA
photolyase multi-domain protein [Acinetobacter baumannii
Naval-78]
Length = 480
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 110/480 (22%), Positives = 187/480 (38%), Gaps = 66/480 (13%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFHQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE 195
+ + P V+ A +K Y+ G L Y + E
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG----LSQCYPVPNKQNE 181
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
P++ G ++ID D I ++ + W GE A+E L D F+ + + +
Sbjct: 182 VPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVCH 234
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIVR 311
Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 235 YKVERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL-W 292
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 293 REFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGMR 346
Query: 372 EMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 347 QLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGWQ 398
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YI-AYVKRIVGGTKKRRADSLVS 484
W C G P F R N +KFD +G YI ++K + K D S
Sbjct: 399 W--CA--STGTDAVPYF---RIFNPIAQSKKFDPEGEYIRQWIKELTHLDNKTIHDPYSS 451
>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
Length = 479
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 98/252 (38%), Gaps = 48/252 (19%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GED L DG L++Y R+ P S LSPYL FG +S Q+ R
Sbjct: 206 GEDGGRAALAAFVDG----GLRSYAAGRDRP-DMEHTSRLSPYLRFGHLSPQQVLAAVRH 260
Query: 293 AR---KLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHAS 344
A ++ ++ F+ EL RE + + F+ P N++ +EW + + + A
Sbjct: 261 AADAGEVRGTDVEKFVSELYW-REFSYHLLFHFPDLAQVNFNRRFDGFEWNQDAKIERA- 318
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPE 399
+++ T PL +A ++ G MH +RM A +++W G
Sbjct: 319 -----------WQRGLTGYPLIDAGMRQLWQTGWMHNRVRMVAASFLIKHALVDWRRG-- 365
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
++ D +D N W V G P F R N KFD
Sbjct: 366 -----EVWFWDTL-VDADPANNAASWQW----VAGSGADAAPYF---RIFNPVTQGEKFD 412
Query: 460 VDGYIAYVKRIV 471
DG AYV+R V
Sbjct: 413 PDG--AYVRRFV 422
>gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
400]
gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
NCIMB 400]
Length = 477
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 105/260 (40%), Gaps = 58/260 (22%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSG---LSPYLHFGQISAQRC-- 286
+GE AA +L D FL ++ +Y +R+ P AL G LSP+L G IS+++C
Sbjct: 203 AGEGAAKRIL----DQFLANQVADYQAERDFP----ALEGTSRLSPFLAIGVISSRQCVA 254
Query: 287 ALEARKARKL----CPEAIDTFLEELIVR---RELADNF--CFYQPNYDSLKGAWEWARK 337
A+ AR + L CP T+L ELI R R L F N++ L W
Sbjct: 255 AILARYPQALVEDTCPA--KTWLNELIWREFYRHLLVAFPRLSMNHNFNELGDGIVW--- 309
Query: 338 SLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KIL 392
R ++ + QT P+ +A+ ++ G MH +RM A ++
Sbjct: 310 ---------RNNLAEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFLTKHLLV 360
Query: 393 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYS 452
+W G Y K IDG G WS G +P F R N
Sbjct: 361 DWRWGER-------YFRQKL-IDGDLAANNGGWQWSA----GTGCDAQPYF---RVFNPM 405
Query: 453 GCKRKFDVDGYIAYVKRIVG 472
KFD D +++KR V
Sbjct: 406 TQSSKFDPDA--SFIKRYVS 423
>gi|390949735|ref|YP_006413494.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
gi|390426304|gb|AFL73369.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
Length = 495
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 110/478 (23%), Positives = 175/478 (36%), Gaps = 95/478 (19%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ----FLGAKARQLGFMLRGL 86
+ W RD R+ DN ALIHA+ V V + D+ GA +R + L G
Sbjct: 5 TLLWFRRDLRLDDNPALIHALTTGAPI---VPVYIHAPDEEAPWTPGAASR---WWLHGS 58
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
L + F ++ +G++ + V GA+ + + + P R K R
Sbjct: 59 LLALDASLQRFGSRLWIARGDSLTELRRIVAATGATGVSWNRLYDPATRERDTHIKQALR 118
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKT-----------------LRGKINKLLPEY 187
SD + + + W + + ++KT L G PE
Sbjct: 119 -SDGLRCESHRSTLLFEPWEIASQTRSASKTGQPYRVFSAFWRACVRELSGIRPDPAPES 177
Query: 188 LIDYPMLEQPIEKWT----GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P P++ T G +I WD + A GE AA+
Sbjct: 178 L---PAGFAPVDGLTVDDLGLLPTIPWDQGLRAT------------WTPGESAAL----A 218
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR-CALEARKARKLCPEAID 302
FL R+ Y R+ P P S LSP+LHFG+IS +R A+ + + +
Sbjct: 219 RATAFLDARIGAYSVARDRPDAP-GTSRLSPHLHFGEISPRRLLAMILDRFGDPAADPAE 277
Query: 303 TFLEELIVRRELADNFCFYQPN-----YDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
+F+ EL RE + + ++ P D + W + + + + ++
Sbjct: 278 SFVRELGW-REFSYHLLYHFPRTPVEPLDPRFADFPWRTEGVAERL----------DAWQ 326
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKY 412
+ +T PL +A E+ + G MH +RM A + L W G A + D
Sbjct: 327 RGRTGIPLVDAGMRELWHTGWMHNRVRMVAASLLTKNLRLPWQVG-------ARWFWDTL 379
Query: 413 EIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
+D + G W+ CG P F R N +FD DG YV+R
Sbjct: 380 -VDADLASNTQGWQWTAGCGA-----DAAPYF---RVFNPVRQGERFDPDG--GYVRR 426
>gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
11379]
Length = 451
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G GE+A +++ +L + Y D ++ L A S LSP+LHFG +SA A
Sbjct: 191 GLARGGEEAGRKLVTS----WLHGPMAAY-EDGHDDLAGDATSRLSPHLHFGTVSAAELA 245
Query: 288 LEARKARKLCPEAI------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
AR+ EA F +++ R A ++ Y+P +D +
Sbjct: 246 NRAREKGGPGGEAFVRQLAWRDFHHQVLAARPDA-SWSDYRPRHDRWR------------ 292
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTT 396
SD+ E E ++ +T PL +A+ ++ + G MH RM A + ++W
Sbjct: 293 --SDEDE----IEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKTLYVDWRV 346
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKR 456
G L + +DG N + W V G RP R +N +
Sbjct: 347 GARHFLDLL--------VDGDVANNQLNWQW----VAGTGTDTRP----NRVLNPVIQGK 390
Query: 457 KFDVDGYIAYVKRIV 471
+FD DG AYV+R V
Sbjct: 391 RFDPDG--AYVRRWV 403
>gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
Length = 471
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 95/245 (38%), Gaps = 41/245 (16%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
WC S D +LK + F +R Y R+ P S LSPYL G +S ++C
Sbjct: 203 AWCASTND----ILKQLR-TFARERSDGYQMKRDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P +G +W D
Sbjct: 257 ARLYAENPQPDLSEGKATWLSE-IIWREFYQHLLVFEPKLVKGRGFIDW---------ED 306
Query: 346 KREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
K + Y ++ FE T P+ +A+ ++ G MH +RM A + ++W G
Sbjct: 307 KIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
E Y K +DG G WS G +P F R N K
Sbjct: 367 EE-------YFMSKL-VDGDFAANNGGWQWSAST----GCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG 462
FD DG
Sbjct: 412 FDSDG 416
>gi|433660514|ref|YP_007301373.1| Deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus BB22OP]
gi|432511901|gb|AGB12718.1| Deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus BB22OP]
Length = 471
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 95/245 (38%), Gaps = 41/245 (16%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
WC S D +LK + F +R Y R+ P S LSPYL G +S ++C
Sbjct: 203 AWCASTND----ILKQLR-TFARERSDGYQMKRDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P +G +W D
Sbjct: 257 ARLYAENPQPDLSEGKATWLSE-IIWREFYQHLLVFEPKLVKGRGFIDW---------ED 306
Query: 346 KREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
K + Y ++ FE T P+ +A+ ++ G MH +RM A + ++W G
Sbjct: 307 KIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
E Y K +DG G WS G +P F R N K
Sbjct: 367 EE-------YFMSKL-VDGDFAANNGGWQWSAST----GCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG 462
FD DG
Sbjct: 412 FDSDG 416
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 104/473 (21%), Positives = 194/473 (41%), Gaps = 96/473 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF----LGAKARQLGFMLRGL 86
V+ W+ RD R++D+ AL HA+ ++ +PVA F +FD L A ++ F+L L
Sbjct: 48 VLCWLRRDLRLQDHAALHHAL----QSGLPVACVF-VFDSTILDSLPADDVRVAFILDSL 102
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
+ LQ + R+ G+ L+ P+++I + +
Sbjct: 103 QSLQEQL-----------------------RQHGSELITVHGDPVQQIPLLANHL----- 134
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI---DYPMLEQ--PIEKW 201
++ T++ + + P + + + +G++ KL + +I D + +Q P +
Sbjct: 135 NAQTVYANEDYE--PAALTRDHAVSQSLAAQGRVLKLFKDQVIFARDEILTQQKQPYTVF 192
Query: 202 TGTRQS----IDWDSIIAAVLRKGAEVP----------EIGWCESGEDAAMEVL--KGSK 245
T +++ I I A +G P E+G+ E + +G++
Sbjct: 193 TPYKRNWLARIQPSDIQAYDCSQGQWAPLPAQALPCLKELGFHEEARTKLLSPAGWQGAQ 252
Query: 246 DGF--LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT 303
R+ Y R+ P K R +S L+P+L FG +S ++ A + E T
Sbjct: 253 TLLQQFEPRIHAYHERRDFPAK-RGVSYLAPHLRFGTLSIRQAVALAWPSDS---EGAAT 308
Query: 304 FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+L ELI R E F ++ P + A E + + K+ R+ + + ++ QT
Sbjct: 309 WLSELIWR-EFYQQFLWHHP-----ETAQESFKPAYKNLPFPNRDDWF--QAWKDGQTGY 360
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRD 418
P+ +A+ ++ +G MH +RM A +++W G + Y K +D
Sbjct: 361 PIVDAAMRQLNQSGYMHNRLRMISASFLVKDLLIDWRWGEQ-------YFAQKL-LDYDM 412
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ G W+ G +P F R N RKFD +G +++R V
Sbjct: 413 ASNVGGWQWAAST----GCDAQPYF---RIFNPITQSRKFDPEG--QFIRRYV 456
>gi|344341302|ref|ZP_08772223.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
gi|343798882|gb|EGV16835.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
Length = 481
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 107/262 (40%), Gaps = 43/262 (16%)
Query: 222 AEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSP 274
A +P I W GE AA+E + F+ R++ Y + R+ P S LS
Sbjct: 188 ALLPRIPWDTGLRETWTPGETAALEQARA----FVQGRIQGYASARDLPALA-GTSALSS 242
Query: 275 YLHFGQISAQRC-ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
+LHFG+I +R A+ + + ++TF+ E I RE A + ++ P+
Sbjct: 243 HLHFGEIGPRRVLAMVREQWDDPTADPVETFVRE-IGWREFAHHLIYHYPHTTDEPLDRR 301
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-- 391
+A ++ +D+ +++ +T PL +A ++ + G MH +RM A +
Sbjct: 302 FAALPWREEDADR-----LLRAWQRGETGIPLVDAGMRQLWHTGWMHNRVRMVVASFLTK 356
Query: 392 ---LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIR 447
L W G A + D +D +G WS CG P F R
Sbjct: 357 NLRLPWQAG-------ARWFWDTL-VDADLAANSLGWQWSAGCGA-----DAAPYF---R 400
Query: 448 YMNYSGCKRKFDVDGYIAYVKR 469
N +FD G AYV+R
Sbjct: 401 IFNPVLQGERFDKSG--AYVRR 420
>gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
Length = 456
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G GE+A +++ +L + Y D ++ L A S LSP+LHFG +SA A
Sbjct: 196 GLARGGEEAGRKLVTS----WLHGPMAAY-EDGHDDLAGDATSRLSPHLHFGTVSAAELA 250
Query: 288 LEARKARKLCPEAI------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
AR+ EA F +++ R A ++ Y+P +D +
Sbjct: 251 NRAREKGGPGGEAFVRQLAWRDFHHQVLAARPDA-SWSDYRPRHDRWR------------ 297
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTT 396
SD+ E E ++ +T PL +A+ ++ + G MH RM A + ++W
Sbjct: 298 --SDEDE----IEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKTLYVDWRV 351
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKR 456
G L + +DG N + W V G RP R +N +
Sbjct: 352 GARHFLDLL--------VDGDVANNQLNWQW----VAGTGTDTRP----NRVLNPVIQGK 395
Query: 457 KFDVDGYIAYVKRIV 471
+FD DG AYV+R V
Sbjct: 396 RFDPDG--AYVRRWV 408
>gi|149377119|ref|ZP_01894869.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
gi|149358655|gb|EDM47127.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
Length = 466
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 110/277 (39%), Gaps = 36/277 (12%)
Query: 218 LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLH 277
L K + P E+GEDAA L + FL +Y R+ P S LSPYL
Sbjct: 188 LSKSFDNPPPRLVETGEDAAHRQL----EQFLDDHAGDYKNLRDLP-SVDGTSLLSPYLA 242
Query: 278 FGQISAQRCALEARKARKLC--PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWA 335
G +S ++C + AR+ + + E + T+ E I R+ N ++ P S+ A++
Sbjct: 243 NGVLSGKQCLIAARQNQGMGGNQEGLVTWTNE-IAWRDFYINILYHYPRI-SMHRAFKPE 300
Query: 336 RKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KK 390
++LK + + E ++ T P+ +A+ ++ G MH +RM A
Sbjct: 301 TEALKWNTPGE-----NFEAWKAGNTGIPIVDAAMRQLNQTGWMHNRLRMITAMFLTKNL 355
Query: 391 ILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMN 450
++W G Y K +DG + G WS D P F R N
Sbjct: 356 FIDWRLG-------EAYFMSKL-VDGFLASNNGGWQWSASTGTDAA----PYF---RVFN 400
Query: 451 YSGCKRKFDVDGYI--AYVKRIVGGTKKRRADSLVSG 485
+ +FD DG YV I KR V G
Sbjct: 401 PATQSERFDPDGEFIRKYVPEIAKLDNKRIHQPWVGG 437
>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS 278]
gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 278]
Length = 415
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++GE AA + L+ FL + Y DR+ P A S LSP+L FG+I+ ++ A
Sbjct: 139 QAGERAAQQRLRS----FLESTVSGYAADRDRP-DIDATSRLSPHLRFGEITPRQIWHAA 193
Query: 291 RKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNYDS--LKGAWEWARKSLKDHASD 345
R A + P + ID FL E I RE + + + P+ S L+ +++ ++D A+
Sbjct: 194 RFAAEERPAQAKGIDKFLSE-IGWREFSRHLLYNNPDLASRNLQPSFD-PFPWVQDDAA- 250
Query: 346 KREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
+++ +T P+ +A E+ + G MH +RM A +++
Sbjct: 251 -------LAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVK 291
>gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTE]
gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella
tularensis subsp. novicida FTE]
gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
Length = 464
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 40/166 (24%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 198 GESASHQIL----EEFLNNKVKEYKTARD-FMSTDSTSKLSPYLHFGEISPSQI-FNAVQ 251
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY-------------DSLKGAWEWARKSL 339
+ + F++EL+ R +F +YQ Y DS K W+ L
Sbjct: 252 SLDYIGNNEEHFIKELVWR-----DFSYYQIYYYPELHNKNINQKFDSFK--WDNDPTLL 304
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
K +++K QT P+ +A E+ G MH +RM
Sbjct: 305 K--------------KWQKGQTGIPIVDAGMRELWQTGYMHNRVRM 336
>gi|350552515|ref|ZP_08921715.1| DNA photolyase FAD-binding [Thiorhodospira sibirica ATCC 700588]
gi|349794054|gb|EGZ47877.1| DNA photolyase FAD-binding [Thiorhodospira sibirica ATCC 700588]
Length = 480
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 147/366 (40%), Gaps = 33/366 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+ W RD R+ D+ AL HA+ + +PV + + A ++ L L
Sbjct: 4 VLCWFSRDLRLADHPALYHAL-HSGLPVIPVYLHAQHEEAPWAPGAASRWWLHHSLSALM 62
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SV 149
++E L + QG++ + + VRE GA +V + +++ ++ + V
Sbjct: 63 HDLERINSRLV-IRQGDSLAQLLSLVRETGAVQVVWNRRYEPHLQQRDQQVATALQQYGV 121
Query: 150 TIHEVDAHNVVPVWVASEKL---EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
+H+ +A VW A L + + K + + P L +P +
Sbjct: 122 AVHQFNA----TVWFAPGTLCKADGEPYRVFTPFWKRCLQTGLARPCLPRPASLLAPSHW 177
Query: 207 SIDWDSIIAAVLRKGAEVP-----EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
DS+ A L P + W GE A L FL + +K+Y R+
Sbjct: 178 P---DSLELAALDLLPRQPWDQGLKASWT-PGEAGAWHRLHD----FLKEPVKHYAQGRD 229
Query: 262 NPLKPRALSGLSPYLHFGQISAQR--CALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
P +P + LS +LHFG+IS + A + + I++F+ EL RE A +
Sbjct: 230 YPAQP-GTARLSAHLHFGEISPGQIHAACQPLLDQGAAHSGIESFIREL-GWREFAHHIL 287
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKM 379
+ P L ++A D D ++++ QT PL +A E+ + G M
Sbjct: 288 HHFPRTPQLPLYPKFADFPWAD-CDDP-----ALTRWQQGQTGIPLVDAGMRELWHTGWM 341
Query: 380 HGFMRM 385
H +RM
Sbjct: 342 HNRVRM 347
>gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum]
Length = 630
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 100/412 (24%), Positives = 169/412 (41%), Gaps = 60/412 (14%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QL 79
S+D K+ VV+W D R+ DN AL A D+A + VP+ + + Q A R ++
Sbjct: 131 SIDVKKA-VVHWFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRV 189
Query: 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREI 134
FMLR L +++ ++ + I ++ E +P+ + E GA L + + E+
Sbjct: 190 DFMLRTLEVIKHDLAK-LDIPLYVETVEKRKRVPDRILELMDQWGAGHLYANMEYEVDEL 248
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVP---VWVASEKLEYSAKT--LRGKINKLLPEYLI 189
RR I + + V VVP + + K +Y+ T R + + +
Sbjct: 249 RREASMIRDFAENGKAFEVVHDTCVVPPGELHTGAGK-QYAVYTPWYRSWVAHIHEN--L 305
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL-------- 241
D L +P EK + + + A + E+P+ + + E L
Sbjct: 306 DLLELYEPPEKNPSSAR-----KVFAKLF--DVEIPDAPKSKRLDGEEKERLRSLWPCGE 358
Query: 242 ---KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARK 295
K D F + + NY RN P + S +S +L G ISA+ C AR K +K
Sbjct: 359 HEAKKRLDKFCEEMIGNYQKKRNIPAEA-GTSSISVHLASGTISARTCVRTARDRNKTKK 417
Query: 296 L--CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
L E I T++ E + R+ + + P + K K S+ Y
Sbjct: 418 LNGGNEGIQTWISE-VAWRDFYKHVLVHWP--------YVCMNKPFKPEYSNI-SWSYDN 467
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTG 397
E F + +T P+ +A+ ++ + G MH RM + AK +L+W G
Sbjct: 468 EHFAAWCEGRTGFPIVDAAMRQLNHLGYMHNRCRMIVACFLAKDLLLDWRKG 519
>gi|427429184|ref|ZP_18919220.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
gi|425880864|gb|EKV29558.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
Length = 481
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 146/379 (38%), Gaps = 55/379 (14%)
Query: 30 PVVYWMFRDQ-RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG-LR 87
PV+ +FRD R+ D+ AL AV +P+ V G AR LG +R L
Sbjct: 9 PVIV-LFRDDLRLADHRALSAAVGT-GAPVIPLYVVDTAHGLGAGETARPLGGAVRWWLH 66
Query: 88 LLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
++ E + L L G + +P E GA+ ++ + + + R ++
Sbjct: 67 YSLESLSEGLRALGSRLILRAGRPHEVVPQVAAETGAARVLLNETVVPTHRESARRMAAA 126
Query: 145 VSD----SVTIHE------------VDAHNVV--PVWVASEKLEYSAKTLRGKINKLLPE 186
+ D +VT+ H V P W A ++ +TL P+
Sbjct: 127 LEDQGVEAVTLRPDALVWPSELKTGTGGHYKVYTPFWKALKQAVGDPETLPPPERLPAPD 186
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+ D P+ ++ T DW A LR+ W GED A L D
Sbjct: 187 HWPD----STPLAEFRLTPAMPDW----AGGLRES-------WT-PGEDGAWACLHTFID 230
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
G L + Y T RN P + S LSP+L FG+ISA R A ++ + D +L
Sbjct: 231 GALAR----YRTGRNLPAE-VGTSRLSPHLRFGEISA-RQVWNAVRSMAEPNASTDAYLS 284
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
E I RE F+ P+ E+ ++ +D R + K T P+
Sbjct: 285 E-IGWREFNRYQLFHNPDLHRTPLRPEFRLFPWREDDADIR-------AWRKGLTGYPIV 336
Query: 367 NASQMEMVYNGKMHGFMRM 385
+A E+ G MH +RM
Sbjct: 337 DAGMRELWETGWMHNRVRM 355
>gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
Length = 469
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 22/159 (13%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F+ K+L NY DR+ P K S LSPY++FGQIS R + P++I FL E
Sbjct: 222 FVDKKLDNYHIDRDYPGK-NGTSTLSPYINFGQISPNRIWF---ALVRFLPQSIQ-FLTE 276
Query: 308 LIVRRELADNFCFYQPNYDS--LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
L+ RE A N P S L+ +++ +DK++ + + + +T P+
Sbjct: 277 LLW-REFAYNILNTNPELGSQNLQQKFDYF-----PWENDKQKF----KLWSRGETGYPI 326
Query: 366 WNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPE 399
+A E++ G MH +RM + K +L W G E
Sbjct: 327 VDAGIRELLSTGYMHNRVRMIVGSFLTKNLLIHWKYGEE 365
>gi|149914833|ref|ZP_01903363.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
AzwK-3b]
gi|149811626|gb|EDM71461.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
AzwK-3b]
Length = 473
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 211 DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
D +AA + +GA + C + E +G F + Y T R+ P + S
Sbjct: 184 DWRLAAAMDRGAAI-----CRPYQRVGEEAAQGRLGWFTGHAIGAYDTARDLPAE-DGTS 237
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NY 325
GLS L G+IS +RC +A +T+L+EL V RE A + ++ P N+
Sbjct: 238 GLSENLALGEISPRRCWHAGMRAMHEGKPGAETWLKEL-VWREFAYHLAWHTPRIVNRNW 296
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A+ W + D + I +++ +T P +A+ EM G+MH RM
Sbjct: 297 REDWDAFPW------NEDEDHPQVI----AWKQGRTGIPFVDAAMREMYVTGRMHNRARM 346
>gi|376241775|ref|YP_005132627.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae CDCE 8392]
gi|372105017|gb|AEX71079.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae CDCE 8392]
Length = 446
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 106/278 (38%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 170 LAAPPKAEQPIDD-TETQAAIAQLGWDAWWAASISK-------AWT-PGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|338999060|ref|ZP_08637715.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
gi|338764081|gb|EGP19058.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
Length = 470
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 122/290 (42%), Gaps = 57/290 (19%)
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
L D P ++ P+E ++ D + A V E W +GEDAA + L +
Sbjct: 169 LRDTPGVQAPLE--------VESDPLPALPSLDSELVDERLW-PAGEDAASDNL----ER 215
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--ALEARKARKLC--PEAIDT 303
FL R ++Y R+ P K R S LSPYL G IS ++C A+ + L + T
Sbjct: 216 FLRFRGRHYKQQRDFP-KVRGTSELSPYLALGMISYRQCLQAVMSENGGHLADGDAGLTT 274
Query: 304 FLEELIVR---RELADNF---CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
++ ELI R + +A F C YQP + K W R+ + +
Sbjct: 275 WVNELIWREFYQHVAVGFPKVCRYQPFQEHTKQL-NW------------RDDDEGFQAWC 321
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-EWTTGPEEALAIAIYLNDKY 412
+ +T P+ +A+ ++V G MH +R M+ +K +L +W G EA + ++
Sbjct: 322 EGRTGYPIVDAAMRQLVSTGWMHNRLRMITAMFLSKHLLIDWRRG--EAFFM------RH 373
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
IDG G W+ G P F R N + +FD DG
Sbjct: 374 LIDGEFCANNGGWQWAAS----TGTDAAPYF---RIFNPTTQSTRFDPDG 416
>gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01]
gi|384041457|ref|YP_005480201.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-12]
gi|384049972|ref|YP_005477035.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-03]
gi|384053082|ref|YP_005486176.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-07]
gi|384056314|ref|YP_005488981.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-22]
gi|384058955|ref|YP_005498083.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-26]
gi|384062249|ref|YP_005482891.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-32]
gi|384118325|ref|YP_005500949.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01]
gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-03]
gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-07]
gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-22]
gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-26]
gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-32]
gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-12]
Length = 309
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 18/178 (10%)
Query: 213 IIAAVLRKGAEVPEI--GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
+ A + R G + P + GW SGE AA L F+ L +Y T R+ P S
Sbjct: 25 LCARLHRVGTQPPALPSGWT-SGEKAAHANLHR----FIENALADYETQRDRADAPHGTS 79
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPE---AIDTFLEELIVRRELADNFCFYQPNYDS 327
LSPY+ GQIS ++ R A P + FL EL R+ A F P+ +
Sbjct: 80 LLSPYIRVGQISVRQIWHAIRHAEHQNPHLATPAEKFLAELGW-RDFAWMQMFTTPDLAT 138
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+ + A+D +++ QT PL +A ++ G MH +RM
Sbjct: 139 RNLRAEFDHMPWRADAAD-------LAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRM 189
>gi|452844325|gb|EME46259.1| hypothetical protein DOTSEDRAFT_42802 [Dothistroma septosporum
NZE10]
Length = 598
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 97/414 (23%), Positives = 169/414 (40%), Gaps = 79/414 (19%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL----FDQFLGAKARQLGFMLRGL 86
VV+W RD R+ DN AL A ++A NVP+ F + + L + AR + F LR L
Sbjct: 97 VVHWFKRDLRLFDNKALHLASEKAKSKNVPLVCVFVVSPQDYQAHLTSPAR-VDFELRSL 155
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVREC---GASLLVTDFS-PLREIRRCKDKIC 142
++++++ L+ + D IP + +C GA L + + E+RR +
Sbjct: 156 EIMKQDLAGLDIPLYMTTIEDRRDVIPKILSKCAEWGAKHLFCNIEYEVDELRRETKLVK 215
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP-------EYLIDYPMLE 195
+ + I V ++ VA +L KT GK + +++ ++P L
Sbjct: 216 AGLKQGIAIEAVHDDSI----VAPGEL----KTGGGKQYSVYSPWFRAWVKHIHEHPHLL 267
Query: 196 QPIEKWTGTRQS------IDWDSIIA------AVLRKGAEVPEIGWCESGEDAAMEVLKG 243
P + + S + +D I ++L++ E W +GE A + L
Sbjct: 268 NPFDTPSQNPASAREKFRLIFDICIPTAPANKSILQEEKERFLHLW-PAGEHEARQRL-- 324
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALEARKARKL--CP 298
D FL ++ Y RN P ++ + LS + G ++A+ R A + +KL
Sbjct: 325 --DRFLNDKIGKYKDTRNFPTL-QSTASLSVHFSAGTLAARTAVRSARDVNSTKKLDGGN 381
Query: 299 EAIDTFLEEL----IVRRELAD--NFCFYQP-NYDSLKGAWEWARKSLKDHASDKREHIY 351
I T++ E+ + LA C ++P Y+ WE Y
Sbjct: 382 PGITTWISEVAWRDFYKHVLAHWPYVCMHKPFKYEYADIEWE-----------------Y 424
Query: 352 TKEQFEK---AQTADPLWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTG 397
EQF++ T P+ +A+ ++ MH RM + AK +L+W G
Sbjct: 425 DDEQFKRWCEGNTGFPIVDAAMRQLNNMAHMHNRCRMIVASFLAKDLLLDWRMG 478
>gi|414162215|ref|ZP_11418462.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
gi|410879995|gb|EKS27835.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
Length = 485
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 116/487 (23%), Positives = 182/487 (37%), Gaps = 109/487 (22%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA-RQLG-----FML 83
PV+ W + R+ D+ AL+ A + + + L D G R LG ++
Sbjct: 7 PVIVWFRDNLRLSDHPALV----AAREAGAALVCLYILDDTHTGKGGNRSLGAATQWWLA 62
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA-SLLVTDFSPLREIRRCKDKIC 142
LR L ++++ Q L L +G+A +P ++ GA ++ D E R +D
Sbjct: 63 SSLRALDTDLKKRGQHLV-LRKGDARAILPRLAKDTGALAVFWIDSEIPAEAARAQDT-- 119
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL----------------PE 186
+ +HE+ V ++ L S ++R K L P
Sbjct: 120 -----AEALHEIG----VETHISPSDLLASPPSIRNKEGNGLRVFTPFWKRVRSQGDPPR 170
Query: 187 YLIDYPMLEQPI--------EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
L L P+ + W DW A LR+ W GE A
Sbjct: 171 PLPAVRKLPPPVASVKSENLKDWKLEPTHPDW----AGGLRET-------WT-PGESGAH 218
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
L + FL + +K Y R+ P + A S LSP+L FG+IS ++ AR A + P
Sbjct: 219 RRL----NDFLDEAIKGYAIGRDFPGRDHA-SHLSPHLRFGEISPRQVFHAARFAAEQHP 273
Query: 299 ---EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDK--REHIYTK 353
++ FL EL RE + F P+ R++L+ D R
Sbjct: 274 ALSRDVEKFLSELGW-REFCRHLLFDHPDLH---------RRNLQSSFDDFPWRRDAKAL 323
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYL 408
+++ +T P+ +A E+ + G M +RM A +L+W G A +
Sbjct: 324 RAWQQGRTGYPIVDAGMRELWHTGTMQNRVRMVTASFLVKHLLLDWREGE------AWFW 377
Query: 409 NDKYEID-GRDPNGY---VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+ + D G +P + GC G P F R N KFD DG
Sbjct: 378 DTLVDADPGSNPGNWQWVAGC----------GADAAPYF---RIFNPILQGEKFDPDG-- 422
Query: 465 AYVKRIV 471
AYV + V
Sbjct: 423 AYVAKWV 429
>gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549]
Length = 464
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 18/155 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 198 GESASHQIL----EEFLDNKVKEYKTARD-FMSTDSTSKLSPYLHFGEISPNQI-FNAVQ 251
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL-KDHASDKREHIY 351
+ + F++EL+ R +F +YQ Y E K++ + S K ++
Sbjct: 252 SLDYIGNNEEHFIKELVWR-----DFSYYQIYYYP-----ELHNKNINQKFDSFKWDNDP 301
Query: 352 T-KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
T ++++K QT P+ +A E+ G MH +RM
Sbjct: 302 TLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRM 336
>gi|38232742|ref|NP_938509.1| riboflavin biosynthesis protein [Corynebacterium diphtheriae NCTC
13129]
gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae]
Length = 446
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 106/278 (38%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 170 LAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|444362622|ref|ZP_21163126.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia BC7]
gi|443596438|gb|ELT64943.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia BC7]
Length = 387
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 94/238 (39%), Gaps = 41/238 (17%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC----ALEARKARKLCPEAI 301
D FLT L Y R+ P +P A S LSP+L FG +S ++ A
Sbjct: 121 DAFLTTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADA 179
Query: 302 DTFLEELIVRRELADNFCFYQPNY--DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
D FL EL RE + ++ P D+ + ++ A R+ +++
Sbjct: 180 DKFLSELGW-REFSYTLLYHFPTLATDNFRAQFD---------AMPWRDDPAALRAWQRG 229
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEI 414
+T PL +A E+ G MH +RM A +++W G EA + D +
Sbjct: 230 RTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIKHLLIDWRAG--EA-----WFRDTL-V 281
Query: 415 DGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
D N W + CG P F R N +KFD DG AYV+R V
Sbjct: 282 DADPANNAASWQWVAGCGA-----DAAPYF---RIFNPVAQGQKFDPDG--AYVRRWV 329
>gi|429092381|ref|ZP_19155017.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 1210]
gi|426742861|emb|CCJ81130.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 1210]
Length = 473
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 114/469 (24%), Positives = 180/469 (38%), Gaps = 80/469 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W D RV DN AL A + + + +A + RQ F+ + L LQ
Sbjct: 5 LVWFRADLRVFDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIWQNLEALQL 64
Query: 92 NIEETFQILFFLFQGEAED------NIPNFVRECGASLLVTDFS-PLREIRRCKDKICNR 144
+ + LF EA D + F E S L ++ L E RR + R
Sbjct: 65 ALAKRG---IPLFTREAPDFAAAVETLATFCDEHQVSALFYNYQYELNEARR-DAAVERR 120
Query: 145 VSDSVTIHEVDAHNVVP---VWVASEKL-----EYSAKTLRGKINKLLPEYLIDYPMLEQ 196
+++ V D ++P V S ++ YS LR ++ + LP P +
Sbjct: 121 LAERVACQGFDDSVMLPPGSVVTGSGEMYKVFTPYSRAFLR-RLGEGLP------PCVNA 173
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
P + G D A E P+ +GE+AA++ L+ F +Y
Sbjct: 174 PKPRAGGAIS----DVPALAPFDYPCETPDALLFPAGEEAALQRLRE----FCQTAAGDY 225
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTFLEELIVR--- 311
P R+ P R S LSPYL G +S ++C L R L + +L ELI R
Sbjct: 226 PEKRDFPAI-RGTSLLSPYLAIGVLSPRQCLHRLLTEHPRALEGGSGAVWLNELIWREFY 284
Query: 312 RELA---DNFCFYQPNYD-SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
R L C +QP D + + AW+ + + ++ E + + +T P+ +
Sbjct: 285 RHLIVAWPCLCRHQPFVDWTARVAWQ------------QNDALF--EAWCEGRTGYPIVD 330
Query: 368 ASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
A+ +M G MH +RM A +++W G Y + IDG
Sbjct: 331 AAMRQMNATGWMHNRLRMITASFLVKDLLVDWRRGER-------YFMSQL-IDGDFAANN 382
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G W+ D P F R N + ++FD DG +++R V
Sbjct: 383 GGWQWAASTGTDAA----PYF---RIFNPTTQGQRFDADG--DFIRRWV 422
>gi|349688251|ref|ZP_08899393.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter oboediens
174Bp2]
Length = 461
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE AA L D F+ +++ Y T R P +P A SGLSPYL FG +SA++ A
Sbjct: 218 QPGEAAAHARL----DSFVAEQVHGYATRRELPAQP-ATSGLSPYLRFGHVSARQI-WHA 271
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHI 350
A + FL E + R+ A + F P+ + E+ + + R
Sbjct: 272 VDATGQGDQDTACFLSE-VGWRDFAQSTLFDFPDLGTTNLRSEFNGMPWRHDPAALRA-- 328
Query: 351 YTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++ +T P+ +A E+ + G MH +RM
Sbjct: 329 -----WQAGKTGYPIIDAGMRELWHTGWMHNRVRM 358
>gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
Length = 471
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 102/245 (41%), Gaps = 40/245 (16%)
Query: 231 ESGED---AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
ES ED + +VLK ++ F +R Y +R+ P S LSPYL G +S ++C
Sbjct: 199 ESSEDWFASTNDVLKQLRE-FARERSDAYKEERDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P KG +W D
Sbjct: 257 ARLYAENQQNDLTEGKATWLSE-IIWREFYQHLLVFEPKLVKGKGFIDW---------ED 306
Query: 346 KREHIYTKEQFEK---AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
K + Y ++ FE+ T P+ +A+ ++ G MH +RM A + ++W G
Sbjct: 307 KIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
A +++ + D NG G WS G +P F R N K
Sbjct: 367 E------AYFMSKLVDGDFAANNG--GWQWSAST----GCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG 462
FD DG
Sbjct: 412 FDSDG 416
>gi|404213780|ref|YP_006667974.1| Deoxyribodipyrimidine photolyase [Gordonia sp. KTR9]
gi|403644579|gb|AFR47819.1| Deoxyribodipyrimidine photolyase [Gordonia sp. KTR9]
Length = 403
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 96/416 (23%), Positives = 155/416 (37%), Gaps = 76/416 (18%)
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSPLREI 134
R+L F+ LR L ++ ++ +G E IP A + DF+P
Sbjct: 16 RRLAFLFDSLRELDDKLDGKLLVV----RGRPEVEIPKLAHAVDAERVHISEDFAPFG-- 69
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
RR + + +R+ D + + V P G++ K E Y +
Sbjct: 70 RRRDEAVADRLGDIELVATGSPYLVSP----------------GRVTKNDGE---PYKVF 110
Query: 195 EQPIEKW--TGTRQSIDWDSIIAAVLRKGAEVPEIGWCE-----------SGEDAAMEVL 241
+W G R D S+ +A + +++ + G +GEDAA
Sbjct: 111 TPYFNRWRDHGWRAPAD-SSVPSASIVDPSDLSKTGRIRVPAAPTKLSIPAGEDAATARW 169
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
F+ L +Y + RN+P + S +S YL +G I + A + + +A
Sbjct: 170 AE----FVDDGLTDYDSGRNDPAG-DSTSRMSAYLKYGNIHPRTLAADLGNQKGKGAQA- 223
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+L EL R AD ++ P+ SL W + DK + + ++ +T
Sbjct: 224 --YLRELAFRDFYAD-VLYHWPH--SLWHNWNRQFDGIDLDTDDKAYERF--DAWKAGRT 276
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDG 416
PL +A ++ G MH +RM A + L W G E L + +DG
Sbjct: 277 GFPLVDAGMRQLAETGYMHNRVRMVTASFLVKDLHLPWWWGAEWFL--------EQLVDG 328
Query: 417 RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
+ G W+ D P F R N +KFD DG YV+R VG
Sbjct: 329 DMASNNHGWQWAAGTGTDAA----PYF---RVFNPEAQAKKFDPDG--EYVRRWVG 375
>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
Length = 476
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 100/452 (22%), Positives = 178/452 (39%), Gaps = 61/452 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ + +Q+ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAIIDVQKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
L +P I W E D E + F + +L +Y R+ P +
Sbjct: 173 PTSLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ-NVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL F QIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFSQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
++ KS + +K E + ++K +T P +A E+ G MH R
Sbjct: 291 -----TVYKPLNKSFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHNRAR 343
Query: 385 M----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
M + K +L W G A + D +D N +G W V G
Sbjct: 344 MAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADA 391
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y+++ V
Sbjct: 392 SPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|90415238|ref|ZP_01223172.1| putative photolyase [gamma proteobacterium HTCC2207]
gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207]
Length = 445
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 23/172 (13%)
Query: 224 VPEIGW---CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQ 280
+P I W D + + K D F+ +++Y RN P K + +S LSPY HFGQ
Sbjct: 154 LPAIDWDKKLHGDWDISEDGAKDRLDDFVFNGIQDYREGRNFPNK-KNVSRLSPYFHFGQ 212
Query: 281 ISAQRCALEARKARKLCPEA--IDTFLEELIVRRELADNFCFYQPNY--DSLK---GAWE 333
+S A A L +DTFL EL RE + ++ P D+L+ +
Sbjct: 213 MSVNTAWYAANDAAALIDNESNLDTFLSEL-GWREFSYYLLYHFPKLPTDNLQQRFNVFP 271
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
WA+ + + + ++K +T PL +A E+ G MH +RM
Sbjct: 272 WAKNTDAE-----------LKAWQKGKTGYPLVDAGMRELYGTGYMHNRVRM 312
>gi|89094232|ref|ZP_01167174.1| Deoxyribodipyrimidine photolyase [Neptuniibacter caesariensis]
gi|89081487|gb|EAR60717.1| Deoxyribodipyrimidine photolyase [Neptuniibacter caesariensis]
Length = 468
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 110/265 (41%), Gaps = 39/265 (14%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+G +AA ++L+ ++ +++ +Y R+ P +P S LSPYL G +S ++C L A
Sbjct: 208 AGTEAAHKLLQH----YVLEKVADYKQSRDFPAEP-GTSSLSPYLSVGVLSTRQC-LAAM 261
Query: 292 KARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIY 351
+A PE D+ ++ RE + P + WE K +K Y
Sbjct: 262 QAYFDQPEWFDSQWVTELIWREFYRHLLVLFPEMNR----WE----PFKPEVEEKLSWQY 313
Query: 352 TKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMRMYWAK---KIL--EWTTGPEEALA 403
+ F+ K +T + +A E++ G MH +RM A K+L +W G +
Sbjct: 314 DESLFQAWCKGETGFAIVDAGMKELLETGWMHNRVRMITASFLTKLLRQDWRLGARFFM- 372
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG- 462
++ IDG + G WS D P F R N +FD G
Sbjct: 373 -------QHLIDGDFASNLGGWQWSASVGADAA----PYF---RIFNPMRQAERFDAKGR 418
Query: 463 YIA-YVKRIVGGTKKRRADSLVSGK 486
Y+ YV + G T ++ D + +
Sbjct: 419 YVGQYVPSLQGLTSVQQHDPMFAAS 443
>gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum]
Length = 482
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 154/419 (36%), Gaps = 90/419 (21%)
Query: 14 GRIRVLKQGSL---DKKRGPVVYWMFRDQRVRDNWALIHAVDQA---------NKNNVPV 61
+RV SL D +R P + W D R+ DN AL A D N
Sbjct: 3 ANVRVFILNSLAMNDPQRPPTLLWFRDDLRLSDNAALKWAADHGPVIGLFIDETINRSIG 62
Query: 62 AVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121
A A +Q L A A+ L F G+ LL+R G + +P V E
Sbjct: 63 AAARWWREQSLNALAQDLSFY--GVPLLRRT-------------GNPLEILPKIVSEMEV 107
Query: 122 SLLVTD---FSPLREIRRCKDKICNRVSDSVTIH-----------EVDAHNVVPVWVASE 167
+ + PL E+ K N + +H EV P V +
Sbjct: 108 KAVTWNRRYHQPLCEVDATLKK--NLRDQGIEVHSHPGFLLTEPWEVSTATGTPYKVFTP 165
Query: 168 KLEYSAKTLRG------KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKG 221
+ + + RG K N +P +L +E PI + + W + +
Sbjct: 166 FSKAAWEVARGHAYETVKNNVTVPSHLTGPEGVELPIPE----MEQPFWATTL------- 214
Query: 222 AEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
+ C GE A E L FL + L++YP R++ L A S LS +L FG+I
Sbjct: 215 -----VKECAPGEKNASEKLFD----FL-EHLQDYPQARDS-LARSATSKLSAHLRFGEI 263
Query: 282 SAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-------KGAWEW 334
S R E + E + FL+EL+ R + A + + P+ D+ + W W
Sbjct: 264 SIHRVWAETAA---IDSEGTELFLKELLWR-DFAWHRLYALPHMDTQNVRMQFNRFGWSW 319
Query: 335 ARKSLKDHASDKREHIYTK-EQFEK-------AQTADPLWNASQMEMVYNGKMHGFMRM 385
+ I TK +QF + +T PL +A E+ G MH +RM
Sbjct: 320 DPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELWATGSMHNRVRM 378
>gi|376289283|ref|YP_005161530.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae C7 (beta)]
gi|372102679|gb|AEX66276.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae C7 (beta)]
Length = 446
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 106/278 (38%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 170 LAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|383819622|ref|ZP_09974891.1| deoxyribodipyrimidine photo-lyase [Mycobacterium phlei RIVM601174]
gi|383336399|gb|EID14798.1| deoxyribodipyrimidine photo-lyase [Mycobacterium phlei RIVM601174]
Length = 434
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 95/409 (23%), Positives = 148/409 (36%), Gaps = 62/409 (15%)
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPL 131
A R+L ++ LR+L+ N++ + +G ++ IP V+ GA+ + DF+P
Sbjct: 43 AGPRRLRYLYDALRVLRDNLDGRLLVT----RGRPQERIPLLVKTIGAASVHVSADFTPF 98
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R +D+ +V + E + P V+ ++ S T P Y +
Sbjct: 99 G---RRRDEKVRAALGAVPLEESSS----PYLVSPGRVTKSDGT---PYKVFSPFYRAWH 148
Query: 192 PM-LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW---CESGEDAAMEVLKGSKDG 247
P G + ID + AV ++P G +GEDAA+E K
Sbjct: 149 EHGWRGPARTGAGCARWIDPADVGGAV-----DIPHGGADLDLPAGEDAALEQWKA---- 199
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F + Y DRN P S +S +L FG I + + + +L E
Sbjct: 200 FTANGIDTYHDDRNRP-DLDGTSRMSAHLKFGTIHPRTMVADLDSS-----PGAQAYLRE 253
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
L R A + W W D E E ++ +T P+ +
Sbjct: 254 LAFRDFYAAVLHAW-----PRSAWWNWNSGFDAMATDDGPEARRRFEAWKAGRTGYPIVD 308
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
A ++ G MH +RM A + L W G L + +DG N
Sbjct: 309 AGMRQLAETGWMHNRVRMIVASFLVKDLHLPWQWGARWFL--------EQLVDGDVANNQ 360
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G W+ D P F R N + +FD DG AYV+R V
Sbjct: 361 HGWQWAAGTGTDAA----PYF---RVFNPTAQGARFDPDG--AYVRRWV 400
>gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|385793100|ref|YP_005826076.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
Length = 464
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 40/166 (24%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 198 GESASHQIL----EEFLDNKVKEYKTARD-FMSTDSTSKLSPYLHFGEISPNQI-FNAVQ 251
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY-------------DSLKGAWEWARKSL 339
+ + F++EL+ R +F +YQ Y DS K W+ L
Sbjct: 252 SLDYIGNNEEHFIKELVWR-----DFSYYQIYYYPELHNKNINQKFDSFK--WDNDPTLL 304
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
K +++K QT P+ +A E+ G MH +RM
Sbjct: 305 K--------------KWQKGQTGIPIVDAGMRELWQTGYMHNRVRM 336
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 154/387 (39%), Gaps = 35/387 (9%)
Query: 20 KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN-----VPVAVAFNLFDQFLGA 74
K G +D +R +V+W + R+ DN AL H AN P+ + ++
Sbjct: 20 KAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQV 79
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLR 132
A + F+ + L L + + L F+ +G+ + P + +L TD P
Sbjct: 80 GANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYS 138
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLRG--------KINKL 183
R + + ++ V + +H + P V ++ L + T + K+ K+
Sbjct: 139 VTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKV 197
Query: 184 L--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
L PE L + P P + + S +D L K E GE A+ +
Sbjct: 198 LGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM 254
Query: 242 KGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
+ S KD R + P N L+P + + LSPYL FG +SA+ + ++ K P+
Sbjct: 255 EESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCLSARLFNQKLKEIIKRQPKH 312
Query: 301 IDTFLEEL--IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
+ + ++ RE +PN+D + G + ++H +H+ E +
Sbjct: 313 SQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHP----DHL---EAWTH 365
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRM 385
+T P +A ++ G +H RM
Sbjct: 366 GRTGYPFIDAIMRQLRQEGWIHHLARM 392
>gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1]
gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1]
Length = 493
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 119/481 (24%), Positives = 180/481 (37%), Gaps = 96/481 (19%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP---VAVAFNLFDQFLGAK 75
LK+ G + W +D R+ DN AL A D A + +A +
Sbjct: 4 LKEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVA 63
Query: 76 ARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR 135
QL F+ R + LL + + I F L Q E +IP F+ + +T R
Sbjct: 64 PIQLDFIERHINLLAKGLG-CLGIQFELIQLERFADIPQFMLDYCQQHNIT-----RVFA 117
Query: 136 RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT---LRGKINKLLPEYLIDYP 192
+ +I RV D I DA VP+ + E + T L G++ ++ +
Sbjct: 118 GSEPEINERVRDQACI---DAG--VPLLLTDEHCLLAPGTVLNLSGEMYRVFTPF----- 167
Query: 193 MLEQPIEKW--TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG--- 247
KW R +I + A + G +PE + G+ +G
Sbjct: 168 -----SRKWREIAARHAILPLGVPAPL---GPVLPEPKALNLAVNKVSSEQWGAGEGQAK 219
Query: 248 -----FLTKRLKNYPTDRNNPLKPRALSG---LSPYLHFGQISAQRC--ALEARKARKLC 297
F+ +++++Y DR+ P AL G +SPYL G +SA++C AL R
Sbjct: 220 RLLCDFVQQKVQDYKQDRDFP----ALDGTSCISPYLAIGVLSARQCVAALLQR-----F 270
Query: 298 PEAI-------DTFLEELIVR---RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
PE I T+L EL+ R R L F NY+ + A R
Sbjct: 271 PEVIVDDTSLGRTWLNELVWREFYRHLLVAFPDLSKNYNFNRQA----------DQVQWR 320
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEAL 402
+I + + + +T P+ +A+ ++ G MH +RM A +++W G
Sbjct: 321 NNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGER--- 377
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVD 461
Y K IDG G WS CG Q P F R N KFD D
Sbjct: 378 ----YFRQKL-IDGDLAANNGGWQWSAGCGCDAQ-----PYF---RIFNPMSQSEKFDPD 424
Query: 462 G 462
G
Sbjct: 425 G 425
>gi|417546932|ref|ZP_12198018.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC032]
gi|421665052|ref|ZP_16105177.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC087]
gi|421671618|ref|ZP_16111588.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC099]
gi|400384820|gb|EJP43498.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC032]
gi|410381580|gb|EKP34145.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC099]
gi|410391223|gb|EKP43598.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC087]
Length = 480
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 103/457 (22%), Positives = 181/457 (39%), Gaps = 66/457 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
L + ++ I NF+ + + + EI + K V D + H
Sbjct: 67 SALHIPLVIQVIPDWKE-IANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNRHS 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ R++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLD--FLQRKNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVY 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P + S LSPYL+ G +S ++C + + L + T+L+EL+
Sbjct: 234 HYKVERDFP-HIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLINQGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
W C G P F R N +KFD +G
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG 427
>gi|350562636|ref|ZP_08931469.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349778975|gb|EGZ33324.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 487
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 34/231 (14%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE--AIDTFL 305
FL + Y R+ P +P S LSP+LHFG+IS ++ R A L P+ + + FL
Sbjct: 225 FLENSAERYHRLRDLPGQP-GTSRLSPHLHFGEISPRQIVRALRDA-GLDPDSGSAEPFL 282
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
E I RE A + F+ P+ A + + A RE +++ +T P+
Sbjct: 283 RE-IGWREFAHHLLFHFPHTTE-------APLNPRFEAFPWRESERDLRAWQQGRTGIPI 334
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
+AS E+ G MH RM A + + W G A + D +D +
Sbjct: 335 VDASMRELWQTGWMHNRSRMIVASLLTKNLRMHWLHG-------ARWFWDTL-VDADLAS 386
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+G W+ D P F R N +FD DG YV+R V
Sbjct: 387 NTLGWQWTAGSGADAA----PYF---RIFNPVLQGERFDPDGR--YVRRYV 428
>gi|374261679|ref|ZP_09620257.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
gi|363537773|gb|EHL31189.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
Length = 477
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--AL 288
E GE AM L + F+ L++Y RN+P K A S L+P+LHFG+IS + A+
Sbjct: 197 EPGEHGAMNKL----NFFIEHHLQDYQEARNHPSK-TATSRLAPHLHFGEISPWQVWNAI 251
Query: 289 EARKARKLCP-EAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDH 342
E K + C + D FL EL RE + ++ P N+ A+ W +
Sbjct: 252 EEAKLQPKCDLRSADHFLAEL-GWREFSYYLLYHFPELPNKNFRQEFDAFPWQQ------ 304
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
H+ + ++ T P+ +A E+ + G MH +RM
Sbjct: 305 ---DETHL---KCWQTGMTGFPIVDAGMRELWHTGYMHNRVRM 341
>gi|429207044|ref|ZP_19198304.1| Deoxyribodipyrimidine photolyase [Rhodobacter sp. AKP1]
gi|428190039|gb|EKX58591.1| Deoxyribodipyrimidine photolyase [Rhodobacter sp. AKP1]
Length = 470
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 110/464 (23%), Positives = 170/464 (36%), Gaps = 61/464 (13%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLRL 88
P++ W RD R+ DN L A + +P+ + + + LGA + +LG G+
Sbjct: 5 PLILWFRRDLRLADNPMLAEAA-ATGRPLIPLFI-LDPETEALGAAPKWRLGL---GVEA 59
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR-RCKDKICNRVSD 147
R +E L L +G A + V E GA+ + +S L E R +D+
Sbjct: 60 FARALEGLGSRLV-LRRGPALAVLEALVAETGAAGV--HWSRLWEPAWRARDEGVKAGLR 116
Query: 148 SVTIHEVD--AHNVVPVWV--ASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE-KWT 202
I H + W + Y T K K P P P KW
Sbjct: 117 QAGIEAASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLPSPAKWP 176
Query: 203 GTRQSIDWDSIIAAVLRKGAEV--PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
+ + WD + + +GA V P + FL+ L Y +R
Sbjct: 177 ASERLASWD--LGRAMNRGAAVVAPHLA-------VGEAAAAERLARFLSGPLDRYAAER 227
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
+ P P S LS L +G+ISA+ +AR + FL+E I RE + +
Sbjct: 228 DRPDAP-LTSRLSENLTYGEISARSLWHAGMRARAEGRAGAEKFLQE-IAWREFGWHLLY 285
Query: 321 YQPNYD--SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
+ P + +G W+ A R E++ + T +P +A+ E+ G
Sbjct: 286 HTPEIARRNWRGDWD---------AFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGT 336
Query: 379 MHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
MH R+ Y K +L +W G + D ID + +G W V
Sbjct: 337 MHNRARLIAGSYLTKHLLTDWRVG-------QAWFEDCL-IDWDPASNALGWQW----VA 384
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
G P F R N + KFD + AY +R V +R
Sbjct: 385 GSGPDASPYF---RIFNPATQAEKFDPES--AYRQRFVAEIARR 423
>gi|358445504|ref|ZP_09156105.1| deoxyribodipyrimidine photo-lyase [Corynebacterium casei UCMA 3821]
gi|356608538|emb|CCE54364.1| deoxyribodipyrimidine photo-lyase [Corynebacterium casei UCMA 3821]
Length = 519
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 133/338 (39%), Gaps = 57/338 (16%)
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS-VTIHE 153
+TF I G+ +P + A+ + R + R+ S + HE
Sbjct: 86 DTFDIPLLTEHGDPRLALPQLANDLNATFVAWSERYHEPQRSIDSAVKERLETSGIPAHE 145
Query: 154 VDAHNVVPVW--VASEKLEYSAKTLRG-KINKLLPEYLIDYPMLEQ--PIEKWTGTRQSI 208
H ++ W + Y T G K+ +LL E D + Q P +GT S+
Sbjct: 146 FPGHLLLEPWNITNGQGNPYKVFTPFGRKLMELLDES-ADLAVATQVGPNFPLSGTGSSL 204
Query: 209 DWDSI----IAAVLRKGAEVP---EIGWCESGEDAAMEVLKGSKDGFLTKRLKN-----Y 256
D DS+ ++ G++ P + W GE A E + F+T L N Y
Sbjct: 205 D-DSLSNIDALNLVPSGSQWPDGLQSRWT-PGEVGAQEQFQR----FITTLLNNSEGKGY 258
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
R+ P + S LSP+L FG+IS R + L P+ +FL EL+ R+ A
Sbjct: 259 AEGRDIPAL-KVTSSLSPHLSFGEISP-RFVWHSITRSSLAPQDSKSFLSELMW-RDFAW 315
Query: 317 NFCFYQPNYDSLK-------GAWEWARK---SLKDH-ASDKREHIYTK-----------E 354
+ F++P+ + W W + S+ DH +D R +K +
Sbjct: 316 HRLFHRPDLATANVRAEFNHFDWLWDSENNVSITDHDTTDPRTRPLSKKARHQLPVTEAD 375
Query: 355 QFEKA-------QTADPLWNASQMEMVYNGKMHGFMRM 385
QFEKA T PL +A E+ G MH +RM
Sbjct: 376 QFEKALNAWRAGTTGIPLVDAGMRELWATGHMHNRVRM 413
>gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
SCRI1043]
gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
SCRI1043]
Length = 497
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 106/463 (22%), Positives = 185/463 (39%), Gaps = 83/463 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
V W+ D R+ DN AL A + + V +A + RQ F+L L L+Q
Sbjct: 14 VVWLRNDLRITDNLALYAACQDPSATVLAVFIATPAQWEKHDMAPRQAAFLLENLTLVQH 73
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREI-RRCKDK-ICNRVSD 147
+ E L + + ++ ++ C A TD ++ EI R +DK + +R++D
Sbjct: 74 VLAEKGIPLHYHECADFAASVDWLMQFC-AEQQATDLFYNHQYEINERLRDKQVKDRLAD 132
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
SV H ++P S T G++ K+ + + +++ +E T +
Sbjct: 133 SVVCHGYHDSLLLP--------PGSVLTGNGEMYKVFTPFRQAF--IKRLLEADTTCVPA 182
Query: 208 IDWDSIIAAVLRKGAEVPEIGW--CE-------SGEDAAMEVLKGSKDGFLTKRLKNYPT 258
D + AE+ + CE GE AA++ L+ F +++++Y
Sbjct: 183 PD---ARGEPINNTAELVPFSYPQCEVDSEDFPCGERAALQQLRR----FCREQVQDYDQ 235
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR 311
R+ P P S LSPYL G +S ++C + R CP+ ++ T+ EL+ R
Sbjct: 236 QRDFPALP-GTSKLSPYLALGIVSPRQC---FNRLRAECPDMLERREGGAFTWFNELVWR 291
Query: 312 ---RELA---DNFCFYQPNYDSLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
R L C ++P AW +W + RE +++ +T P
Sbjct: 292 EFYRHLIVSWPQLCKHRP-----FTAWTQWVK---------WRESPEDLTAWQQGKTGYP 337
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
+ +A+ ++ G MH +RM A +++W G +++ + D
Sbjct: 338 IVDAAMHQLNETGWMHNRLRMICASFLVKDLLIDWREGER------YFMSQLLDGDLAAN 391
Query: 420 NGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
NG G W+ D P F R N + +FD DG
Sbjct: 392 NG--GWQWAASTGTDAA----PYF---RIFNPTTQGERFDPDG 425
>gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
Peru-466]
gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
Peru-466]
gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
Length = 471
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 95/245 (38%), Gaps = 41/245 (16%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
WC S D +LK + F +R Y R+ P S LSPYL G +S ++C
Sbjct: 203 AWCVSTND----ILKQLR-TFARERSDGYQMKRDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P +G +W D
Sbjct: 257 ARLYAENPQPDLSEGKATWLSE-IIWREFYQHLLVFEPKLVKGRGFIDW---------ED 306
Query: 346 KREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
K + Y ++ FE T P+ +A+ ++ G MH +RM A + ++W G
Sbjct: 307 KIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
E Y K +DG G WS G +P F R N K
Sbjct: 367 EE-------YFMSKL-VDGDFAANNGGWQWSAST----GCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG 462
FD DG
Sbjct: 412 FDSDG 416
>gi|424890665|ref|ZP_18314264.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393172883|gb|EJC72928.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 482
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 145/387 (37%), Gaps = 75/387 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA-FNLFDQFLGAKARQLGFMLRGLRL 88
PV+ W +D R+ DN AL A D + + +P+ + LGA Q ++ L
Sbjct: 8 PVILWFRKDLRLDDNHALA-AADLSGRPIIPLYIKEPAAHSGALGAA--QAWWLHHSLEA 64
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
L ++ + Q L GEA D + + E GA + + RC D + D
Sbjct: 65 LDGSLRKR-QGRLVLASGEALDVLGALISESGAEAVFWN--------RCYDPSGTAI-DI 114
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRG-----KINKLLPEYLIDYPMLEQPIEKWTG 203
HE+ + + L ++ + G ++ L E+P+E
Sbjct: 115 RIKHELQKQAIEARSFGGQLLYDPSRLMTGGGTPYRVYTPFWRALEGAGEPERPVEA--- 171
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCES--------------------GEDAAMEVLKG 243
A LR A++P+ ES GE A E L+
Sbjct: 172 -----------PAKLRLAAQLPKSERLESWKLLPTKPDWARDFGDLWTPGEQGAREKLRS 220
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT 303
F+ L Y +R+ P K +A S LSP+L G+IS R R K P A
Sbjct: 221 ----FVEDGLDGYKENRDYPAK-QATSLLSPHLALGEISPARIWDATRGLSKRMPAADIL 275
Query: 304 FLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
+ I RE + + F+ P N+++ ++W R D A+ + +
Sbjct: 276 HFRKEIAWREFSYHLLFHFPRLASDNWNARFDGFKW-RNDDDDFAA-----------WRR 323
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRM 385
T P+ +A ++ +G MH +RM
Sbjct: 324 GMTGYPIVDAGMRQLWRHGWMHNRVRM 350
>gi|301345220|ref|ZP_07225961.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB056]
gi|301596996|ref|ZP_07242004.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB059]
gi|417573727|ref|ZP_12224581.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Canada BC-5]
gi|421802050|ref|ZP_16238004.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Canada BC1]
gi|400209295|gb|EJO40265.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Canada BC-5]
gi|410404438|gb|EKP56505.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Canada BC1]
Length = 480
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 99/461 (21%), Positives = 180/461 (39%), Gaps = 74/461 (16%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---CNRVSDSVT 150
L + + +E ++DFS I I N + T
Sbjct: 67 SALHIPLVI--------QVIPYWKEIAT--FISDFSKKYNIENVYANIEIGVNELKRDKT 116
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINK--------------------LLPEYLID 190
+ + + +++ ++ + +++R + + L Y +
Sbjct: 117 VQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVP 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
E P++ G ++ID D I ++ + W GE A+E L D F+
Sbjct: 177 NKQNEVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIE 229
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLE 306
+ + +Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+
Sbjct: 230 QSVCHYKVERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLD 288
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
EL+ RE + F ++ + + + S K + EH+ ++ QT P+
Sbjct: 289 ELL-WREFYQHILF---DFPHVSKHIPFKKDSQKIKWNHNPEHLTA---WQTGQTGIPIV 341
Query: 367 NASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A +++ G MH +RM A +++W G + + ++ IDG
Sbjct: 342 DAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAAN 393
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G W C G P F R N +KFD +G
Sbjct: 394 NGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG 427
>gi|325981909|ref|YP_004294311.1| deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
Length = 434
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 145/365 (39%), Gaps = 51/365 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD----QFLGAKARQLGFMLRGL 86
VV+W RD R+ DN L HA+ PV F +FD L ++ F+ L
Sbjct: 6 VVFWFRRDLRLDDNVGLSHALASGQ----PVLPVF-IFDPSILTGLPENDARVTFIYDTL 60
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV- 145
+ L+ +EE + L+ G + + +R + + + R + +C +
Sbjct: 61 QTLRTQLEERYSSSIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVCEWLK 120
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ--PIEKWTG 203
+ SV + H V EK E AK G Y++ P + + ++ T
Sbjct: 121 ARSVAFNTYKDH------VLFEKNEI-AKDSGGP-------YVVYTPYMHKWRKVQSETT 166
Query: 204 TR---QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
R S ++I + + +IG+ S A+ + D TK L++Y DR
Sbjct: 167 LRAYSTSEKLGNMIKHLHSPNLSLTDIGFVRS----AVTIPASRLD---TKLLQHYAHDR 219
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
+ P A S L P+L FG IS ++ +A D F ELI R E +
Sbjct: 220 DFP-ALTATSLLGPHLRFGTISIRQVFQQALNTSN------DIFGNELIWR-EFFSQILW 271
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P+ + + R ++ A+D E++ K T PL +A ++ G MH
Sbjct: 272 HFPHTQNSSFKPRYDRIQWRNSAADF-------ERWCKGMTGYPLVDAGMRQLNATGTMH 324
Query: 381 GFMRM 385
+RM
Sbjct: 325 NRVRM 329
>gi|421851103|ref|ZP_16284024.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus NBRC
101655]
gi|371458034|dbj|GAB29227.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus NBRC
101655]
Length = 473
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 219 RKGAEVPEI--GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
R G + P + GW SGE AA L F+ L +Y T R+ P S LSPY+
Sbjct: 195 RVGTQPPALPSGWT-SGEKAAHANLHR----FIENALADYETQRDRADAPHGTSLLSPYI 249
Query: 277 HFGQISAQRCALEARKARKLCPE---AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
GQIS ++ R A P + FL EL R+ A F P+ + E
Sbjct: 250 RVGQISVRQIWHAIRHAEHQNPHLATPAEKFLAEL-GWRDFAWMQMFTTPDLATRNLRAE 308
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + A+D +++ QT PL +A ++ G MH +RM
Sbjct: 309 FDHMPWRADAAD-------LAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRM 353
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 187/466 (40%), Gaps = 79/466 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ-LGFMLRGLRLL 89
++ W+ +D R+ DN AL HA + VPV + + + +G+ ++ L L +
Sbjct: 5 IIVWIRKDFRLVDNPALFHAAKEGMV--VPVYIHDDYEESSMGSASKWWLHHALNDFKTS 62
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRRCKD-------- 139
+ IE T + +G +D + + E A + + + P ++R K+
Sbjct: 63 IKKIEGTLIVQ----KGNPKDVLQKLLHETNAQDIYWNSRYEP-HALKRDKELQAFFSEQ 117
Query: 140 KICNRVSDSVTIHE---VDAHNVVPVWVASEKLEYSAK-TLRGKINKLLPEYLIDYPMLE 195
+I R + +HE + N P V + + S K ++ + K+
Sbjct: 118 QINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKV-----TSIQASS 172
Query: 196 QPIEKWTGTR----QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+P+E + + SI WD I + E+ E A++V K FL
Sbjct: 173 KPVESLSVSDLDLLPSIPWDETIKST------------WEATEKGAIDVFKT----FLKN 216
Query: 252 RLKNYPTDRNNPLKPRAL-SGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLEELI 309
+L +Y R+ P + AL S LSPYL GQ+SA+ R KA K+ +A + E+
Sbjct: 217 KLLHYEKGRDFPAE--ALNSFLSPYLATGQLSARVLYHYLRTKAEKVGSDAFEQ-QAEMF 273
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHA-SDKREHIYTKEQFEKAQTADPLWNA 368
+R+ + +F YQ Y E + K +D E + + ++ +T PL +A
Sbjct: 274 IRQLIWRDFA-YQLLYHFPHTTTEPLNEKFKQFQWADGNEEL---QAWKNGKTGYPLVDA 329
Query: 369 SQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
E+ G MH +RM A ++ W G A + D +D N +
Sbjct: 330 GMRELWETGFMHNRVRMVAASFLVKHLLIHWKHG-------ANWFFDTL-VDADLANNTM 381
Query: 424 GCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
G W V G P F R N KFD +G Y+K+
Sbjct: 382 GWQW----VAGSGADAAPYF---RIFNPITQSEKFDKEG--EYIKK 418
>gi|384422583|ref|YP_005631942.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
Length = 469
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ GF +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRGFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|441508929|ref|ZP_20990851.1| deoxyribodipyrimidine photo-lyase [Gordonia aichiensis NBRC 108223]
gi|441446934|dbj|GAC48812.1| deoxyribodipyrimidine photo-lyase [Gordonia aichiensis NBRC 108223]
Length = 426
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 173/447 (38%), Gaps = 60/447 (13%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA-RQLGFMLRGLRLLQRNI 93
M RD R+ D AL A+ N V V F L + + R+L F+ LR L +
Sbjct: 1 MRRDLRLNDLPALGEAI---GDNKRQVLVCFVLDPRLEKSSGERRLAFLYDSLRELDAKL 57
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGA-SLLVT-DFSPLREIRRCKDKICNRVSDSVTI 151
+ ++ +G ++ IP GA S+ V+ DFSP RR + +SD V
Sbjct: 58 DGNLLVV----RGRPDEEIPRLAAAVGAGSVHVSEDFSPFG--RRRDAAVTEALSDDVEW 111
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD 211
V + P V+ ++ + G K+ + + TG ++
Sbjct: 112 QPVGS----PYLVSPGRVTKTD----GTPYKVFTPFFRAWGDHGWRSPATTGAPSNLLNP 163
Query: 212 SIIAAVLR-KGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
S I R + P +GEDAA+E + F+ L Y +DR+ P A S
Sbjct: 164 SDIRPSGRIRIPAAPVRLDLPAGEDAALERWRA----FIDDDLSGYDSDRDRP-DLDASS 218
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
+S YL FG I + A + K++ + +L EL R AD ++ P K
Sbjct: 219 RMSAYLKFGNIHPRTMADDLGKSK-----SAQAYLRELAFRDFYAD-VLYHWP-----KS 267
Query: 331 AWEWARKSLKDHASDKREHIYTK-EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK 389
W D + D + + + + + +T PL +A ++ G MH +RM A
Sbjct: 268 LWHNWNDQFDDISLDTGKAAEKRFDAWREGRTGFPLVDAGMRQLSETGFMHNRVRMIAAS 327
Query: 390 KI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
+ L W G A + D+ DG + G W+ D P F
Sbjct: 328 FLVKDLHLPWWWG-------ARHFLDQL-TDGDMASNQHGWQWAAGTGTDAA----PYF- 374
Query: 445 KIRYMNYSGCKRKFDVDGYIAYVKRIV 471
R N +KFD DG Y++R +
Sbjct: 375 --RVFNPETQAKKFDPDG--DYIRRWI 397
>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisA53]
gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisA53]
Length = 483
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 115/482 (23%), Positives = 178/482 (36%), Gaps = 103/482 (21%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
P + W D R+ D+ A++ A + PV + L +Q G R LG ++ +
Sbjct: 8 PSLVWFRDDLRLSDH----PALNAAASSGRPVLCLYVLDEQSPGG--RPLGGAARWWLAQ 61
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
LR LQ+ + E L L +G A + RE A ++ + + R ++
Sbjct: 62 SLRSLQQILSERGATLM-LRRGAAAQVVAGLARETNAEVVYYNDIAMAPARTVAAELAAT 120
Query: 145 VSD-SVTIHE-----VDAHNVV------------PVWVASEKLEYSAKTLRGKINKLLPE 186
++D + +H+ + A + P W L AK L P
Sbjct: 121 LADHGIAVHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDPAKPLPA------PT 174
Query: 187 YLIDYPMLEQP-IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
L P ++ W + DW A LR + GE AA L
Sbjct: 175 ALGPPPAAASDRLDDWALEPTAPDW----AGGLRAA--------WQPGEAAAQRALTD-- 220
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC---ALEARKARKLCPEAID 302
FLT + Y DR+ P +P S LSP+L FG+I ++ A A AR +D
Sbjct: 221 --FLTTGIAGYAGDRDRPDRP-GTSLLSPHLRFGEIGPRQIWHAARFAAAARPAIAGDVD 277
Query: 303 TFLEEL----IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
FL EL R L D+ N A+ W ++D A + +++
Sbjct: 278 KFLSELGWREFCRHLLFDHSDLATRNLQPAFDAFPW----VEDPAGLR--------AWQR 325
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYE 413
T P+ +A ++ G MH +RM A +++W G + + + +
Sbjct: 326 GLTGYPIVDAGMRQLWQTGVMHNRVRMVVASFLVKHLLIDWRCGEQ------WFWDTLVD 379
Query: 414 ID-GRDPNGY---VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
D G +P + GC G P F R N KFD DG AYV+R
Sbjct: 380 ADAGSNPGNWQWVAGC----------GADAAPYF---RVFNPILQGEKFDPDG--AYVRR 424
Query: 470 IV 471
V
Sbjct: 425 FV 426
>gi|384084820|ref|ZP_09995995.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 484
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT---F 304
FL + L NY RN P + ++S LSP+L G+IS ++ E R + PE D F
Sbjct: 214 FLDESLVNYSEGRNFPAQ-NSVSRLSPHLSHGEISPRQIWQETRFHLRQHPELTDEGEHF 272
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
L EL RE + + F+ P R D K + E+++ QT P
Sbjct: 273 LREL-GWREFSWHLLFHFPQLPDTP-----LRPEFADFPWQKDTLLL--ERWQSGQTGYP 324
Query: 365 LWNASQMEMVYNGKMHGFMRM 385
+ +A E+ +G MH +RM
Sbjct: 325 IVDAGMRELWQSGWMHNRVRM 345
>gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
Length = 471
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 40/245 (16%)
Query: 231 ESGED---AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
ES ED + ++LK ++ F +R Y ++R+ P S LSPYL G +S ++C
Sbjct: 199 ESSEDWLASTNDILKQLRE-FARERSDAYQSERDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P KG +W D
Sbjct: 257 ARLYAENQQNDLTEGKATWLSE-IIWREFYQHLLVFEPKLVKGKGFIDW---------ED 306
Query: 346 KREHIYTKEQFEKAQTAD---PLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
K + Y ++ FE+ +T P+ +A+ ++ G MH +RM A + ++W G
Sbjct: 307 KIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
A +++ + D NG G WS G +P F R N K
Sbjct: 367 E------AYFMSKLVDGDFAANNG--GWQWSAST----GCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG 462
FD +G
Sbjct: 412 FDANG 416
>gi|429729906|ref|ZP_19264559.1| FAD binding domain of DNA photolyase [Corynebacterium durum F0235]
gi|429148501|gb|EKX91505.1| FAD binding domain of DNA photolyase [Corynebacterium durum F0235]
Length = 446
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 96/243 (39%), Gaps = 45/243 (18%)
Query: 252 RLKNYPTDR--NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+L ++ D NN L + SGLSP+L FG++S E R + E + FL +LI
Sbjct: 195 KLHSFDVDHYDNNNLGAPSTSGLSPHLRFGEVSPATVWAEVRNST----ENAEQFLRQLI 250
Query: 310 VRRELADNFCFYQPNYDSL-------KGAWEW---ARKSLKDHASDKRE------HIYTK 353
R+ A + ++ PN ++ + WEW A+ S A E HI
Sbjct: 251 W-RDFAWHRFYHLPNMATVNVREAFNRFPWEWTPRAKPSSTPRAFAHVEMDVEAQHIGEL 309
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY---WAKKIL--EWTTGPEEALAIAIYL 408
++ +T PL +A E+ G MH RM W K L W G E +
Sbjct: 310 AAWQSGRTGVPLVDAGMRELWATGSMHNRARMVVGSWLTKNLGIHWRHGEE-------WF 362
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
D +D + W + G D P F R N ++KFD G Y+
Sbjct: 363 WDTL-VDADAASNPFNWQW-VAGSGDDA---APYF---RVFNPLTQQKKFDASG--TYIA 412
Query: 469 RIV 471
R V
Sbjct: 413 RWV 415
>gi|375107513|ref|ZP_09753774.1| deoxyribodipyrimidine photolyase [Burkholderiales bacterium
JOSHI_001]
gi|374668244|gb|EHR73029.1| deoxyribodipyrimidine photolyase [Burkholderiales bacterium
JOSHI_001]
Length = 498
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 108/254 (42%), Gaps = 51/254 (20%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+G A E+L D FL +R+ Y R+ P R S LS +L FG +S +R A EA
Sbjct: 225 TGSSGAHELL----DDFL-ERIDRYAEHRDFP-AIRGPSYLSTHLRFGTVSIRRLAREAW 278
Query: 292 KARKLCPEAIDTFLEELIVR---------RELADNFCFYQPNYDSLKGAWEWARKSLKDH 342
+ + + +L ELI R CF +P YD LK W+ + +
Sbjct: 279 QRMQGGSRGAEVWLSELIWRDFYHQILHHHPRVVGHCF-KPEYDRLK--WDHGKHADALF 335
Query: 343 ASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
A+ + + +T PL +A+ ++ +G MH +RM A + L+W G
Sbjct: 336 AA-----------WCEGRTGYPLVDAAMHQLNDSGYMHNRLRMVVASFLTKDLGLDWRRG 384
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
EA A++LND D NG G W+ G +P F R N K
Sbjct: 385 --EAY-FALHLND---FDLAANNG--GWQWAAS----TGCDAQPYF---RIFNPVSQSEK 429
Query: 458 FDVDGYIAYVKRIV 471
FD +G ++KR +
Sbjct: 430 FDPEG--KFIKRYL 441
>gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
Length = 471
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 40/245 (16%)
Query: 231 ESGED---AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
ES ED + ++LK ++ F +R Y ++R+ P S LSPYL G +S ++C
Sbjct: 199 ESSEDWLASTNDILKQLRE-FARERSDAYQSERDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P KG +W D
Sbjct: 257 ARLYAENQQNDLTEGKATWLSE-IIWREFYQHLLVFEPKLVKGKGFIDW---------ED 306
Query: 346 KREHIYTKEQFEKAQTAD---PLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTG 397
K + Y ++ FE+ +T P+ +A+ ++ G MH +RM A + ++W G
Sbjct: 307 KIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWG 366
Query: 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRK 457
A +++ + D NG G WS G +P F R N K
Sbjct: 367 E------AYFMSKLVDGDFAANNG--GWQWSAS----TGCDGQPYF---RIFNPISQGEK 411
Query: 458 FDVDG 462
FD +G
Sbjct: 412 FDANG 416
>gi|375289840|ref|YP_005124380.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 241]
gi|376244673|ref|YP_005134912.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC01]
gi|371579511|gb|AEX43178.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 241]
gi|372107303|gb|AEX73364.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC01]
Length = 446
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 105/279 (37%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHGVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P QPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKSAQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLEDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
Length = 464
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 29/220 (13%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLE 306
F +++ Y +R+ P + + S LSPYL G ISA++CAL +A + D +L+
Sbjct: 207 FCRQKVSQYHNNRDYP-EIQGTSQLSPYLAIGAISAKQCALRLHLEANYELNQGEDIWLD 265
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
ELI RE + + PN + + + D+ D E++ K +T P+
Sbjct: 266 ELI-WREFYTHLLHFYPNLSKNQAFLSYDKYIEWDNNLDNF------ERWCKGETGFPIV 318
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A+ ++ G MH +RM A + ++W G + Y K IDG +
Sbjct: 319 DAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGEQ-------YFMSKL-IDGDFASN 370
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVD 461
G W C G P F R N +KFD D
Sbjct: 371 NGGWQW--CA--SVGCDSSPYF---RIFNPITQGKKFDAD 403
>gi|184159014|ref|YP_001847353.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
gi|332874793|ref|ZP_08442663.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
gi|384132774|ref|YP_005515386.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter
baumannii 1656-2]
gi|384144186|ref|YP_005526896.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MDR-ZJ06]
gi|385238477|ref|YP_005799816.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii
TCDC-AB0715]
gi|387123058|ref|YP_006288940.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MDR-TJ]
gi|407933671|ref|YP_006849314.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii TYTH-1]
gi|416145025|ref|ZP_11600142.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB210]
gi|417569487|ref|ZP_12220345.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC189]
gi|417575678|ref|ZP_12226526.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-17]
gi|417874362|ref|ZP_12519215.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH2]
gi|417877634|ref|ZP_12522323.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH3]
gi|421203523|ref|ZP_15660660.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AC12]
gi|421533487|ref|ZP_15979770.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AC30]
gi|421630122|ref|ZP_16070835.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC180]
gi|421704353|ref|ZP_16143798.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ZWS1122]
gi|421708131|ref|ZP_16147510.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ZWS1219]
gi|424051485|ref|ZP_17789017.1| hypothetical protein W9G_00174 [Acinetobacter baumannii Ab11111]
gi|425755113|ref|ZP_18872940.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-113]
gi|445473631|ref|ZP_21452898.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC338]
gi|183210608|gb|ACC58006.1| Deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
gi|322508994|gb|ADX04448.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter
baumannii 1656-2]
gi|323518978|gb|ADX93359.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii
TCDC-AB0715]
gi|332737054|gb|EGJ68011.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
gi|333367141|gb|EGK49155.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB210]
gi|342229084|gb|EGT93954.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH2]
gi|342235250|gb|EGT99861.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH3]
gi|347594679|gb|AEP07400.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MDR-ZJ06]
gi|385877550|gb|AFI94645.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MDR-TJ]
gi|395553710|gb|EJG19716.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC189]
gi|395571167|gb|EJG31826.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-17]
gi|398326897|gb|EJN43038.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AC12]
gi|404665041|gb|EKB33004.1| hypothetical protein W9G_00174 [Acinetobacter baumannii Ab11111]
gi|407190187|gb|EKE61406.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ZWS1122]
gi|407190744|gb|EKE61959.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ZWS1219]
gi|407902252|gb|AFU39083.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii TYTH-1]
gi|408698890|gb|EKL44376.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC180]
gi|409988487|gb|EKO44657.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AC30]
gi|425495563|gb|EKU61743.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-113]
gi|444769056|gb|ELW93255.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC338]
Length = 480
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 110/480 (22%), Positives = 187/480 (38%), Gaps = 66/480 (13%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE 195
+ + P V+ A +K Y+ G L Y + E
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG----LSQCYPVPNKQNE 181
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
P++ G ++ID D I ++ + W GE A+E L D F+ + + +
Sbjct: 182 VPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVCH 234
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIVR 311
Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 235 YKVERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL-W 292
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 293 REFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGMR 346
Query: 372 EMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 347 QLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGWQ 398
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YI-AYVKRIVGGTKKRRADSLVS 484
W C G P F R N +KFD +G YI ++K + K D S
Sbjct: 399 W--CA--STGTDAVPYF---RIFNPIAQSKKFDPEGEYIRQWIKELTHLDNKTIHDPYSS 451
>gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32]
gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens
CN-32]
Length = 493
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 118/481 (24%), Positives = 181/481 (37%), Gaps = 96/481 (19%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP---VAVAFNLFDQFLGAK 75
LK+ G + W +D R+ DN AL A D A + +A + +
Sbjct: 4 LKEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWECHDVA 63
Query: 76 ARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR 135
QL F+ R + LL + + I F L Q E +IP F+ + +T R
Sbjct: 64 PIQLDFIERHINLLAKGLG-CLGIQFELIQLERFADIPQFMLDYCQQHNIT-----RVFA 117
Query: 136 RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT---LRGKINKLLPEYLIDYP 192
+ +I RV D I DA VP+ + E + T L G++ ++ +
Sbjct: 118 GSEPEINERVRDQACI---DAG--VPLLLTDEHCLLAPGTVLNLSGEMYRVFTPF----- 167
Query: 193 MLEQPIEKW--TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG--- 247
KW R +I + A + G +PE + G+ +G
Sbjct: 168 -----SRKWREIAARHAILPLGVPAPL---GPVLPEPKALNLAVNKVSSEQWGAGEGQAK 219
Query: 248 -----FLTKRLKNYPTDRNNPLKPRALSG---LSPYLHFGQISAQRC--ALEARKARKLC 297
F+ +++++Y DR+ P AL G +SPYL G +SA++C AL R
Sbjct: 220 RLLCDFIQQKVQDYKQDRDFP----ALDGTSCISPYLAIGVLSARQCVAALLQR-----F 270
Query: 298 PEAI-------DTFLEELIVR---RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
PE I T+L EL+ R R L F N++ + A R
Sbjct: 271 PEVIVDDTSLGRTWLNELVWREFYRHLLVAFPDLSKNHNFNRQA----------DQVQWR 320
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEAL 402
+I + + + +T P+ +A+ ++ G MH +RM A +++W G
Sbjct: 321 NNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGER--- 377
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVD 461
Y K IDG G WS CG Q P F R N KFD D
Sbjct: 378 ----YFRQKL-IDGDLAANNGGWQWSAGCGCDAQ-----PYF---RIFNPMSQSEKFDPD 424
Query: 462 G 462
G
Sbjct: 425 G 425
>gi|424894750|ref|ZP_18318324.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178977|gb|EJC79016.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 482
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 144/379 (37%), Gaps = 59/379 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W +D R+ DN AL +A + + +P+ ++ A Q ++ L L
Sbjct: 8 PVILWFRKDLRLDDNQAL-NAAHLSGRPVIPLYIS-EPAAGAGPLGAAQAWWLHHSLEAL 65
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP------LR--------- 132
R + + Q L GEA + + F+ E GA+ + + + P +R
Sbjct: 66 DRALRKR-QGQLVLASGEALEVLRAFISESGAAAVFWNRRYDPSCTTIDIRIKHELKKQA 124
Query: 133 -EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
E+R ++ + S +T P W A E A L + L L
Sbjct: 125 IEVRSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALEGAGELALPLEAPVKLQLAAQL--- 181
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P E+ +E W DW + W GE + L+ F+
Sbjct: 182 PKSER-LESWKLLPTKPDWARDFGDL-----------WT-PGEQGGRDKLR----AFVED 224
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
L Y +R+ P K +A S LSP+L G+IS R R K P A + I
Sbjct: 225 TLDGYRENRDYPAK-QATSMLSPHLALGEISPARIWDATRGLSKRVPAADIVHFRKEIAW 283
Query: 312 RELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
RE + + F+ P N++ +EW R + +D E + + T P+
Sbjct: 284 REFSYHLLFHFPRLASSNWNDRFDGFEW-RNADEDF-----------EAWCRGLTGYPIV 331
Query: 367 NASQMEMVYNGKMHGFMRM 385
+A ++ +G MH +RM
Sbjct: 332 DAGMRQLWRHGWMHNRVRM 350
>gi|408492000|ref|YP_006868369.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
gi|408469275|gb|AFU69619.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
Length = 435
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 80/374 (21%), Positives = 147/374 (39%), Gaps = 71/374 (18%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ----LGFMLRGLR 87
V+W RD R+ DN L HA+ + V V +FD+ + + ++ + F+ L+
Sbjct: 7 VFWFRRDMRLEDNVGLYHAL-----SGVFSVVPLFIFDKNILNELQEDDARISFIFEQLQ 61
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRV 145
++ ++++ + + E+ +++ + T D+ P R K
Sbjct: 62 KMRSHLQDHYGSSIATYHSTPEEAFHELLKDFEVEAVYTNRDYEPYAHQRDSKINTL-LA 120
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR 205
+ + H+ V EK E G + YL+ P + Q W
Sbjct: 121 NQGIEFHDFKDQ------VIFEKTEVEKND--GGM------YLVFTPYMRQ----WKKEF 162
Query: 206 QSIDWDSIIAA----VLRKGAEVPEIGWCESG-EDAAMEVLKGSKDGFLTKRLKNYPTDR 260
++ID + + K + +P++ + G ++++V D +TK L + D
Sbjct: 163 ENIDLKTFPSEDHLDNTYKNSMLPDVSLSDMGFVKSSIQV----PDYNITKDLLEHYEDT 218
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N S LSPYL FG I ++ A + +TFL ELI RE +
Sbjct: 219 RNIPSIEGTSRLSPYLRFGLIGYRKLIQAALSVKN------ETFLNELIW-REFYKAILY 271
Query: 321 ---------YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
++P YD + EW +D+ E E+++K +T P+ +A
Sbjct: 272 NHPKTQNSAFKPKYDRI----EW--------RNDENEF----EKWKKGKTGYPIVDAGMR 315
Query: 372 EMVYNGKMHGFMRM 385
++ G MH +RM
Sbjct: 316 QLNETGWMHNRLRM 329
>gi|205372682|ref|ZP_03225493.1| deoxyribodipyrimidine photolyase [Bacillus coahuilensis m4-4]
Length = 482
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 133/323 (41%), Gaps = 51/323 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ RD R++D+ L A + V V D+ L R L F+L L +Q
Sbjct: 3 IVWLKRDIRLQDHRPLYEASLRGETLVVYVVEPSIWKDEPLSM--RHLHFILESLEEMQN 60
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI 151
+ L +F GE D + SLL T + P R + K+ +
Sbjct: 61 SFNSIGGKLA-VFHGEMIDAL---------SLLYTQYGPFR-LWSHKEYGPKAL------ 103
Query: 152 HEVDAHNVVPVWVASEKL---EYSAKTLRGK---INKLLPEY--LIDYPMLEQPIEKWTG 203
++ + +V W+ L EY A + K I + E+ +D P+L +PI
Sbjct: 104 --LERNKIVKDWMEKNGLHWTEYQATAISQKSSSIKQFKKEWQVFMDEPVLPKPIRIQAP 161
Query: 204 TRQSIDWDSIIAAVLRKGAEV---PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
+ + +A +K + P + GE A + L+ FL +R +Y T++
Sbjct: 162 DKLPSSFIKDLAGYKKKSQGIKGEPIRFGQQGGELLAWDTLQT----FLDERFVHYETNQ 217
Query: 261 NNPLKPRALSG--LSPYLHFGQISA----QRCALEARKARKLCPEAIDTFLEELIVR--- 311
NPL ++SG LSPYL FG IS+ Q +K E +D FL ++ R
Sbjct: 218 MNPLA-SSISGSRLSPYLAFGNISSRDVYQTVLSSKQKGESHSLEQLDLFLSRILRRDFL 276
Query: 312 -RELADNFCFYQ----PNYDSLK 329
+ L +N +Q P +D ++
Sbjct: 277 HQRLIENPTLHQYSLHPLFDGVR 299
>gi|445449585|ref|ZP_21444310.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-92]
gi|444756307|gb|ELW80853.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-92]
Length = 480
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 185/466 (39%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSISKEQQDLW-PVGEQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKLERDFP-HIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ +T P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKNTQKIKWNHNPEHLTA---WQTGETGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|421789719|ref|ZP_16225967.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
gi|410397859|gb|EKP50098.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
Length = 480
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 104/456 (22%), Positives = 178/456 (39%), Gaps = 64/456 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE 195
+ + P V+ A +K Y+ G L Y + E
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG----LSQCYPVPNKQNE 181
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
P++ G ++ID D I ++ + W GE A+E L D F+ + + +
Sbjct: 182 VPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVCH 234
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIVR 311
Y +R+ P +A S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 235 YKVERDFP-HIQATSKLSPYLNMGILSIRQCLQALFRNQHGNFHLVTEGQQTWLDELL-W 292
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 293 REFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQMGQTGIPIVDAGMR 346
Query: 372 EMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCM 426
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 347 QLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGWQ 398
Query: 427 WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
W C G P F R N +KFD +G
Sbjct: 399 W--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG 427
>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 474
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 149/381 (39%), Gaps = 70/381 (18%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLRGL 86
+ W +D RV+DN AL A D VP+ + FD+ R G ++ L
Sbjct: 7 IMWFRQDLRVKDNPALNAACDMGKI--VPIYI----FDE-SAPDGRMPGGASKWWLHHSL 59
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
+ L + + QI F+G+ + IP + AS + + + P + R K
Sbjct: 60 KSLNKRLNGHLQI----FKGDPQTLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSLL 115
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP----IEK 200
SD +E + N +W + L+ R P Y +E+P
Sbjct: 116 GSD----YEAHSFNGSSLWEPMKVLKKDGTPYR----VFTPYYKNGCLQIEEPRYPKAPP 167
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLTKRL 253
T +D +S A L A +P I W ++ GED A + L F+
Sbjct: 168 ARITYADVDDNSDGLAAL---ALLPTIKWDDTIAKEWTPGEDGAADNLSD----FIENSA 220
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE--AIDTFLEELIVR 311
+ Y R+ P + S LSP+LHFG++S + A K R E +I+T+L EL
Sbjct: 221 RRYKDGRDIP-SAKGTSRLSPHLHFGEVSPNQVWY-AIKDRFGTSEDKSIETYLSEL-GW 277
Query: 312 RELADNFCFYQP-----NYDSL--KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
RE + F+ P N++ K W K+LK ++ T P
Sbjct: 278 REFSYYLLFHFPTLPNKNFNDKFDKFPWRTDAKALK--------------AWQTGNTGIP 323
Query: 365 LWNASQMEMVYNGKMHGFMRM 385
+ +A E+ G MH +RM
Sbjct: 324 IVDAGMRELWQTGYMHNRVRM 344
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 42/169 (24%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE+ A L D FL +K+Y R+ P + S LSP+L FG+IS ++ A+
Sbjct: 204 GEEGATRRL----DDFLAGTVKHYGDGRDIPAEAYT-SRLSPHLKFGEISPRQIWHAAQY 258
Query: 293 ARKLCPEA---IDTFLEELIVRRELADNFCF-------------YQPNYDSLKGAWEWAR 336
A++ PEA ID FL E+ R FC+ ++ +D W +
Sbjct: 259 AKQRLPEAAESIDKFLSEIGWR-----EFCYTLLDQFPEMPNKPFKAQFDHFP--WAGTQ 311
Query: 337 KSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
K+LK ++K T P+ +A E+ G MH +RM
Sbjct: 312 KALK--------------AWQKGLTGYPIVDAGMRELWQTGFMHNRVRM 346
>gi|341615188|ref|ZP_08702057.1| deoxyribodipyrimidine photo-lyase [Citromicrobium sp. JLT1363]
Length = 470
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 146/376 (38%), Gaps = 49/376 (13%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL-GAKARQLG-----FML 83
P + W+ RD R+ D AL HA QA PV F L D+ G R G ++
Sbjct: 4 PQIVWLRRDLRLADQPAL-HAAAQAG----PVVPVFILDDERPKGDDDRTYGGAHRWWLH 58
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
L L R L +G++ + E A + + R ++++ +
Sbjct: 59 HSLESLSRGFGR-HNARIVLRKGDSVSVLAGLAHELEAEAVHANRHYEPWWREAEEELKD 117
Query: 144 RVSDSVTIHEVDAHNVVPVWVAS----EKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPI 198
+ D + D + ++P A+ + + R + + P + P + QP
Sbjct: 118 ALPDGTRLCLHDGNYLMPPGTATTGSGDPYKIYTPFYRAMLEIMPPRDELPVPSTISQPS 177
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + DWD + + A E W GEDAA E L G+ + Y
Sbjct: 178 DM-PESDALADWDLLPTSP--NWATQMEDFWT-VGEDAAHERL-----GWWADHVAEYED 228
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
RN P + S +SP+LH+G+IS + R + TF ELI R+ A N
Sbjct: 229 GRNLPSVDQT-SQMSPHLHWGEISPVTIWHALKDKRS---DGWKTFESELIW-RDYAQNI 283
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASD-------KREHIYTK--EQFEKAQTADPLWNAS 369
+ P+Y R++ +D D R HI + E ++ +T P+ +A
Sbjct: 284 VYQFPDY---------PRETYRDAIDDTKLWRNPNRGHIIQEELEAWQMGRTGYPIVDAG 334
Query: 370 QMEMVYNGKMHGFMRM 385
++ G MH +RM
Sbjct: 335 MRQLWALGWMHNRVRM 350
>gi|423636149|ref|ZP_17611802.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
gi|401276137|gb|EJR82094.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
Length = 476
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 101/456 (22%), Positives = 178/456 (39%), Gaps = 69/456 (15%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +P+ + F +G+ A+ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPIYIQDETFS--IGSAAK--WWLHHAIIDIKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N +Q I K T QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPTSKVQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W + E+ A +V K F + +L Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKK----FFSSKLAFYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQI + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQIPVKLMYHYLINKSTERQCSLFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ P ++ K+ + +K E + +++ +T P +A E+ G MH
Sbjct: 287 HYPF-----TVYKPLNKNFEHFPWNKEEELL--RVWQRGETGYPFIDAGMRELWQTGFMH 339
Query: 381 GFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
RM + K +L W G A + D +D N +G W V
Sbjct: 340 NRARMAVASFLVKHLLISWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGS 387
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y+++ V
Sbjct: 388 GADASPYF---RIFNPITQGEKFDKNG--EYIRKWV 418
>gi|424059066|ref|ZP_17796557.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
gi|404669804|gb|EKB37696.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
Length = 480
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 184/466 (39%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--ENIDLDEIEKLFCSFLSKEQQDLW-PVGEQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P + S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKVERDFP-NIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + S K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKDSQKIKWNHNPEHLTA---WQMGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 464
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 38/176 (21%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GEDA+ ++L + FL ++K Y R+ + + S LSPYLHF
Sbjct: 184 PKLSWQNIIDQWQIGEDASHQIL----EEFLDGKVKEYKIARDF-MSTDSTSKLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ---------PNYDSLK 329
G+IS + A ++ + F++EL+ R +F +YQ N +
Sbjct: 239 GEISPNQI-FNAVQSLDYIGNNEEHFIKELVWR-----DFSYYQIYYYPELHNKNINQKF 292
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++EW D KR ++ QT P+ +A E+ G MH +RM
Sbjct: 293 DSFEWDN----DATLLKR--------WQTGQTGIPIVDAGMRELWQTGYMHNRVRM 336
>gi|354598518|ref|ZP_09016535.1| DNA photolyase FAD-binding [Brenneria sp. EniD312]
gi|353676453|gb|EHD22486.1| DNA photolyase FAD-binding [Brenneria sp. EniD312]
Length = 489
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 84/389 (21%), Positives = 156/389 (40%), Gaps = 63/389 (16%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ D R+ DN AL A A + + +A + RQ F+L L LQ+
Sbjct: 5 LVWLRNDLRITDNPALHAACQDAQARVLALFIATPQQWRQHDMAPRQAAFLLAHLHALQQ 64
Query: 92 NIEETFQILFFLFQGE---AEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ E L++ + A +P+F ++ + L + RR + ++
Sbjct: 65 ALAEKGIALYYHECADFAAAAHWLPDFCQQHAVTHLFYNRQYEINERRRDGQAEALLAGR 124
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
V D ++P S T +G++ K+ + + +++ +E TG
Sbjct: 125 VECRGFDGGLLLP--------PGSVLTAKGEMYKVFTPFRQAF--IQRLLEADTG----- 169
Query: 209 DWDSIIAAVLRKGAEVPEI--------------GWCESGEDAAMEVLKGSKDGFLTKRLK 254
S+ A R+G V G GE AA+ L+ F ++++
Sbjct: 170 ---SVPAPEQRRGGAVAVTTALTPFSYPQQDIDGDFPVGETAALHQLRR----FCREQVQ 222
Query: 255 NYPTDRNNPLKPRALSG---LSPYLHFGQISAQRCALEARKARKLCPEAID-------TF 304
+YP R+ P AL+G LSPYL G +S ++C + R CP ++ ++
Sbjct: 223 DYPRQRDLP----ALAGTSKLSPYLALGVLSPRQC---FNRLRAECPAMLERRESGAFSW 275
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
EL V RE + + P+ K +W R+ + D +++ +T P
Sbjct: 276 FNEL-VWREFYHHLLVFWPDLCRHKPFTDWTRRVQWRQSPD------FLAAWQQGKTGYP 328
Query: 365 LWNASQMEMVYNGKMHGFMRMYWAKKILE 393
+ +A+ ++ G MH +RM A +++
Sbjct: 329 IVDAAMRQLNQTGWMHNRLRMICASFLVK 357
>gi|406596893|ref|YP_006748023.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
gi|406374214|gb|AFS37469.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
Length = 474
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 144/382 (37%), Gaps = 72/382 (18%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W +D RV+DN AL A D VP+ + + ++ L L +
Sbjct: 7 IMWFRQDLRVKDNPALNAACDMGKI--VPIYIYDDTAPNGREPGGASKWWLHHSLSSLNK 64
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSV 149
+ QI F+G+ + IP ++ A + + + P +I R K + ++
Sbjct: 65 RLNGHLQI----FKGDPQTLIPKLMKSFNAKGIFWNRCYEPW-QINRDK-----TIKKTL 114
Query: 150 TIHEVDAH--NVVPVWVASEKLEYSAKTLR--------GKINKLLPEY------LIDYPM 193
HE +AH N +W + L+ R G + P Y I Y
Sbjct: 115 IEHEYEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYAD 174
Query: 194 LEQPIEKWTGTR--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ + T SI+WD+ I E W GED A + L F+
Sbjct: 175 VDNDSDGLTSLDLLPSINWDATI-----------EKEWS-PGEDGAADNLAD----FIEN 218
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLEELIV 310
+ Y R+ P S LSP+LHFG++S + + K ++I+T+L EL
Sbjct: 219 SARKYKDGRDIP-SANGTSRLSPHLHFGEVSPNQVWYAIKDKFGNSEDKSIETYLSEL-G 276
Query: 311 RRELADNFCFYQP-------NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RE + F+ P N K W K+LK ++K T
Sbjct: 277 WREFSYYLLFHFPTLPNKNFNEKFDKFPWRTDAKALK--------------AWQKGNTGI 322
Query: 364 PLWNASQMEMVYNGKMHGFMRM 385
P+ +A E+ G MH +RM
Sbjct: 323 PIVDAGMRELWQTGYMHNRVRM 344
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 109/463 (23%), Positives = 178/463 (38%), Gaps = 72/463 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W RD R+ D+ L+ A+ A+ VPV V + A + FML LR L
Sbjct: 6 AIVWFRRDLRLHDHPPLVRAL-AAHARVVPVFVLDPAIVRGRFASGARTAFMLDCLRELD 64
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRVSDS 148
++ E L + +G E +P RE GA+ + +D +P R + + +
Sbjct: 65 ADLRERGSGLV-VREGRPERELPALAREIGAAAVHWASDATPYAIARDRRVRSALAAAQP 123
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE--QPIEKWTGTRQ 206
N V A R + P Y + P Q +E+ T R
Sbjct: 124 AVAAVPGPGNFV------------ADVGRPRTRAGGP-YTVFTPFHRAWQQLERRTVHRT 170
Query: 207 SIDWDSIIAAVLRKGA--EVPEIGWCESGEDAAMEVLKGSKDG------FLTKRLKNYPT 258
+ A LR+GA + +G + A V G + +L L +Y
Sbjct: 171 PAVLPPLPAG-LRRGALPSLAALGLTDELSPTARAVEPGERAARRAAERWLDGHLGDYAR 229
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
D + S LSPYLH G +SA+ C E R R+ E + F+ +L R+ +
Sbjct: 230 DHDRLAG--GTSALSPYLHHGCLSAREC--EQRAVRR-GGEGAEAFVRQLAW-RDFYAHV 283
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ-----FEKAQTADPLWNASQMEM 373
+ P ++H R + ++ ++ +T PL +A ++
Sbjct: 284 LLHHPE------------DVRREHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQL 331
Query: 374 VYNGKMHGFMRM----YWAKKI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+G MH R+ + K + L+W G EA + ++ +DG + W
Sbjct: 332 RASGWMHNRARLVTGSFLTKDLQLDWRAG--EAWFM------RWLLDGDVASNNGNWQW- 382
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
I V G P F +I +N + +R+ D DG AYV+R V
Sbjct: 383 IASV---GVDPAPAFRRI--LNPALQQRRHDPDG--AYVRRWV 418
>gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R]
gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 482
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 152/426 (35%), Gaps = 104/426 (24%)
Query: 14 GRIRVLKQGSL---DKKRGPVVYWMFRDQRVRDNWALIHAVDQA---------NKNNVPV 61
+RV SL D R P + W D R+ DN AL A D N
Sbjct: 3 ANVRVFILNSLAMNDPHRPPTLLWFRDDLRLSDNAALKWAADHGPVIGLFIDETINRSIG 62
Query: 62 AVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121
A A +Q L A A+ L F G+ LL+R G + +P V E
Sbjct: 63 AAARWWREQSLNALAQDLSFY--GVPLLRRT-------------GNPLEILPKIVSEMEV 107
Query: 122 SLLVTD---FSPLREIRRCKDKICNRVSDSVTIH-----------EVDAHNVVPVWVASE 167
+ + PL E+ K N + +H EV P V +
Sbjct: 108 KAVTWNRRYHQPLCEVDATLKK--NLRDQGIEVHSHPGFLLTEPWEVSTATGTPYKVFTP 165
Query: 168 KLEYSAKTLRG------KINKLLPEYL-------IDYPMLEQPIEKWTGTRQSIDWDSII 214
+ + + RG K N +P +L + P +EQP T ++
Sbjct: 166 FSKAAWEVARGHAYETVKNNVTVPSHLTGPEGVELPIPEMEQPFWATTLVKE-------- 217
Query: 215 AAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSP 274
C GE A E L FL + L++YP R++ L A S LS
Sbjct: 218 ---------------CAPGEKNASEKLFD----FL-EHLQDYPQARDS-LARSATSKLSA 256
Query: 275 YLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL------ 328
+L FG+IS R E + E + FL+EL+ R + A + + P+ D+
Sbjct: 257 HLRFGEISIHRVWAETAA---IDSEGTELFLKELLWR-DFAWHRLYALPHMDTQNVRMQF 312
Query: 329 -KGAWEWARKSLKDHASDKREHIYTK-EQFEK-------AQTADPLWNASQMEMVYNGKM 379
+ W W + I TK +QF + +T PL +A E+ G M
Sbjct: 313 NRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELWATGSM 372
Query: 380 HGFMRM 385
H +RM
Sbjct: 373 HNRVRM 378
>gi|345003555|ref|YP_004806409.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SirexAA-E]
gi|344319181|gb|AEN13869.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. SirexAA-E]
Length = 459
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 41/222 (18%)
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR----REL 314
DR++ L A S LSP+LHFG +S AR A EA F+ +L R + L
Sbjct: 222 DRHDDLAGDATSRLSPHLHFGTLSPTELIHRARSAGGAGAEA---FVRQLCWRDFHHQVL 278
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
A +Y + W R + D E +++ +T PL +A+ ++
Sbjct: 279 AARPAASHADYRTRDDRWRTERTAAGD-----------IEAWKEGRTGYPLVDAAMRQLR 327
Query: 375 YNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
+ G MH R+ A + ++W G L + +DG N + W +
Sbjct: 328 HEGWMHNRGRLLTASFLVKTLYVDWRIGARHFLELL--------VDGDIANNQLNWQW-M 378
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G G RP R +N +++D DG AYV+R V
Sbjct: 379 AGT---GTDSRP----NRVLNPVVQAKRYDTDG--AYVRRWV 411
>gi|260556618|ref|ZP_05828836.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|260409877|gb|EEX03177.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|452948034|gb|EME53515.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MSP4-16]
Length = 480
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 184/466 (39%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + +GF LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-IGFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCPSLSKEQQDLW-PVGEQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P + S LSPYL+ G +S ++C + + L E +L+EL+
Sbjct: 234 HYKLERDFP-HIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQIWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRIRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751949|ref|ZP_16188985.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753807|ref|ZP_16190796.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|421757530|ref|ZP_16194409.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|421759384|ref|ZP_16196217.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674702|ref|ZP_18111618.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086284|gb|EKM86404.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|409086489|gb|EKM86608.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|409091110|gb|EKM91115.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092478|gb|EKM92451.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|417434746|gb|EKT89688.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
Length = 464
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 40/166 (24%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 198 GESASHQIL----EEFLDNKVKEYKTARD-FMSTDSTSKLSPYLHFGEISPNQI-FNAVQ 251
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY-------------DSLKGAWEWARKSL 339
+ + F++EL+ R +F +YQ Y DS K W+ L
Sbjct: 252 SLDYIGNNEEHFIKELVWR-----DFSYYQIYYYPELHNKNINQKFDSFK--WDNDPTLL 304
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
K +++K QT P+ +A E+ G MH +RM
Sbjct: 305 K--------------KWQKGQTGIPIVDAGMRELWQAGYMHNRVRM 336
>gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
subsp. tularensis MA00-2987]
Length = 355
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 18/155 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 89 GESASHQIL----EEFLDNKVKEYKTARDF-MSTDSTSKLSPYLHFGEISPNQI-FNAVQ 142
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL-KDHASDKREHIY 351
+ + F++EL+ R +F +YQ Y E K++ + S K ++
Sbjct: 143 SLDYIGNNEEHFIKELVWR-----DFSYYQIYYYP-----ELHNKNINQKFDSFKWDNDP 192
Query: 352 T-KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
T ++++K QT P+ +A E+ G MH +RM
Sbjct: 193 TLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRM 227
>gi|171463059|ref|YP_001797172.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 490
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 208/492 (42%), Gaps = 92/492 (18%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W+ RD R+ DN AL HA+ ++ + V +AF +FD + L +LRG L
Sbjct: 4 ALVWLRRDLRLYDNSALHHALKESRQ----VWLAF-IFDTEI------LKPLLRGK--LD 50
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
N + + + F++QG + I + +R G L+V +P I + ++ V+
Sbjct: 51 ANGLKHDRRVDFIWQGIKQ--IDDQLRAQGGGLIVRFSNPTECIPQLASELG--VNAVFA 106
Query: 151 IHEVDAHNVVPVWVASEKLEYSA---KTLRGKI----NKLLPEYLIDYPMLEQPIEKWTG 203
H+ + + V + KLE T + ++ ++L + + W
Sbjct: 107 NHDYEPSAIERDEVVTAKLEKEGIEFLTFKDQVIFEKKEILTNSNTVFSIFTPYKNNWFK 166
Query: 204 TRQSIDWDSI--------IAAVLRKGAE----VPEIGWCESGEDAAMEVLKGSKDG---- 247
T Q D + +AA+ +K ++ + +G+C +G ++ + GS+ G
Sbjct: 167 TLQEKDLAAYECNPKPGQLAAIPKKISKPLPSLESMGFCPTGIESYLP--PGSEGGQAFL 224
Query: 248 --FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
FLT R+ Y R+ P + +S LS +L FG +S + EA + +L
Sbjct: 225 EDFLT-RIDQYQISRDFP-AIKGVSYLSTHLRFGMLSIRGLVREAHRRMLAGSMGATIWL 282
Query: 306 EELIVRR----------ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
ELI R LA F +P+YD++ WE + K ++T
Sbjct: 283 SELIWRDFYFMILANHPRLAKGASF-KPDYDNI--VWESGATAKK---------LFTA-- 328
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLND 410
+ + +T PL +A+ ++ +G MH +RM A + ++W G EA A +LND
Sbjct: 329 WCEGKTGYPLVDAAMHQLNQSGYMHNRLRMVVASFLTKDLGIDWRWG--EAY-FAEHLND 385
Query: 411 KYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
+E+ NG G W V G +P F R N KFD +G ++KR
Sbjct: 386 -FELSSN--NG--GWQW----VSSSGCDAQPYF---RIFNPITQSEKFDPEG--KFIKRY 431
Query: 471 VGGTKKRRADSL 482
+ +K S+
Sbjct: 432 LPQLEKLSKKSV 443
>gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
ES114]
gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
ES114]
Length = 479
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 29/220 (13%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLE 306
F +++ Y +R+ P + + S LSPYL G ISA++CAL +A + D +L+
Sbjct: 222 FCRQKVSQYHNNRDYP-EIQGTSQLSPYLAIGAISAKQCALRLHLEANYELNQGEDIWLD 280
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
ELI RE + + PN + + + D+ D E++ K +T P+
Sbjct: 281 ELI-WREFYTHLLHFYPNLSKNQAFLSYDKYIEWDNNLDHF------ERWCKGETGFPIV 333
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A+ ++ G MH +RM A + ++W G + Y K IDG +
Sbjct: 334 DAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGEQ-------YFMSKL-IDGDFASN 385
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVD 461
G W C G P F R N +KFD D
Sbjct: 386 NGGWQW--CA--SVGCDSSPYF---RIFNPITQGKKFDAD 418
>gi|392532976|ref|ZP_10280113.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas arctica A
37-1-2]
Length = 464
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 45/370 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQTAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C A+ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHVIEAPSFSDCTRELIDFCKANDVKHVIANTEYELNEVNRDKAILHECDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+S + T++E D + PV + K L +Y + L Q W T
Sbjct: 121 LSITFTLYEGDL--IAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ----WPLT 174
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ +D + +L+ C E L D F+ +L +Y R+ P
Sbjct: 175 SEPTKFDE--SGLLKSDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIP- 224
Query: 265 KPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTF--LEELIVR---RELADN 317
+ SGLSPYL G +S ++ ++ R L TF + EL+ R R L
Sbjct: 225 SVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAE 284
Query: 318 FCFYQ--PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
F N++ A W RKS + + + + +T PL +A+ +++
Sbjct: 285 FPKLSRGDNFNEKYNAVVW-RKSENEFTA-----------WCEGRTGFPLVDAAMLQLKQ 332
Query: 376 NGKMHGFMRM 385
G MH +RM
Sbjct: 333 TGWMHNRLRM 342
>gi|359454744|ref|ZP_09244013.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20495]
gi|358048121|dbj|GAA80262.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 147/374 (39%), Gaps = 53/374 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQTAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C A+ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY----LIDYPMLEQPIEK 200
+S + T++E D + P S K ++ K+ + L Y + +
Sbjct: 121 LSITFTLYEGDL--IAPA--------GSVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLTQ 170
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W T I++D + +L+ C E L D F+ +L +Y R
Sbjct: 171 WPLTSDPIEFDE--SDLLKNDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQR 221
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTF--LEELIVR---RE 313
+ P + SGLSPYL G +S ++ ++ R L TF + EL+ R R
Sbjct: 222 DIP-SVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRH 280
Query: 314 LADNFCFYQ--PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQM 371
L F N++ A W RKS D + + + +T PL +A+ +
Sbjct: 281 LIAEFPKLSRGDNFNEKYNAVVW-RKSESDFKA-----------WCEGRTGYPLVDAAML 328
Query: 372 EMVYNGKMHGFMRM 385
++ G MH +RM
Sbjct: 329 QLKQTGWMHNRLRM 342
>gi|423413073|ref|ZP_17390193.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|423431142|ref|ZP_17408146.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
gi|401102633|gb|EJQ10619.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|401118167|gb|EJQ25999.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
Length = 476
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 101/452 (22%), Positives = 178/452 (39%), Gaps = 61/452 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D E + F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFP-DQNVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+ YL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLATYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
++ KS + +K E + ++K +T P +A E+ G MH R
Sbjct: 291 -----TVYKPLNKSFEHFPWNKEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHNRAR 343
Query: 385 M----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
M + K +L W G A + D +D N +G W V G
Sbjct: 344 MAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADA 391
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD +G Y++R V
Sbjct: 392 SPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 476
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 102/455 (22%), Positives = 177/455 (38%), Gaps = 59/455 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAIIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI-HEVD 155
L + +G E+ I + V + G + + + + + K+ + D I E +
Sbjct: 65 GSTLI-IRKGSTEEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGMICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ WV +K K N + ++ +PI K QSI + +
Sbjct: 124 SHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ------VIHKPISK----VQSIKGGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 174 VSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFP-NQNAHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A++ KS + + E + ++K +T P +A E+ G MH RM
Sbjct: 291 ----TAYKPLNKSFEHFPWNNEEELL--RVWQKGETGYPFIDAGMRELWQTGFMHNRTRM 344
Query: 386 YWAKKILE-----WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
A +++ W G A + D +D N +G W V G
Sbjct: 345 AVASFLIKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
P F R N KFD +G Y+++ V K
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRKWVPELK 422
>gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 464
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 38/176 (21%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GEDA+ ++L + FL ++K Y R+ + + S LSPYLHF
Sbjct: 184 PKLSWQNIIDQWQIGEDASHQIL----EEFLDGKVKEYKIARDF-MSTDSTSKLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ---------PNYDSLK 329
G+IS + A ++ + F++EL+ R +F +YQ N +
Sbjct: 239 GEISPNQI-FNAVQSLDYIGNNEEHFIKELVWR-----DFSYYQIYYYPELHNKNINQKF 292
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++EW D KR ++ QT P+ +A E+ G MH +RM
Sbjct: 293 DSFEWDN----DATLLKR--------WQTGQTGIPIVDAGMRELWQTGYMHNRVRM 336
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 134/379 (35%), Gaps = 58/379 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W RD R+ DN AL +A + + +P+ + A Q ++ L L
Sbjct: 32 PVILWFRRDLRLDDNQAL-NAAHLSGRPIIPLYINEPAAAGTGPLGAAQAWWLHHSLEAL 90
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP----------------L 131
R++ E Q L G+A + + +++ GA + + + P
Sbjct: 91 DRSLHER-QGGLVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQA 149
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
E R ++ + S +T P W A E + L L
Sbjct: 150 IEARSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRL---AAQR 206
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P E ++ W DW + W GE A E L F+
Sbjct: 207 PASET-LKSWKLLPTKPDWAKDFTDL-----------WT-PGEQGARERLSA----FVED 249
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
LK Y +R+ P KP A S LSP+L G+IS R R P A + I
Sbjct: 250 ELKGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSNRVPAADIVHFRKEIAW 308
Query: 312 RELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
RE + + F+ P N++ ++W R E + + T P+
Sbjct: 309 REFSYHLLFHFPRLASENWNDRFDGFKW------------RNDDGDFEAWRRGMTGYPIV 356
Query: 367 NASQMEMVYNGKMHGFMRM 385
+A ++ +G MH +RM
Sbjct: 357 DAGMRQLWRHGWMHNRVRM 375
>gi|410634949|ref|ZP_11345574.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
gi|410145523|dbj|GAC12779.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
Length = 476
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 151/371 (40%), Gaps = 49/371 (13%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W +D R+RDN AL A AN + +PV + Q A ++ + L L
Sbjct: 7 IMWFRQDLRLRDNPALCAAC--ANGDVIPVYILDEHNAQSFSPGAASKWWLHQSLLSLNA 64
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP--LREIRRCKDKICNRVSD 147
++ E ++ +G D + N + + GA+ +V + + P + + K+++ R
Sbjct: 65 SLSEKLHVM----RGNPIDVLNNIIEQTGATHVVWNRCYEPWQIHRDKELKEQLKQRNI- 119
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
+V++ N +W + S + P Y L+ P + + T
Sbjct: 120 -----QVESFNGSLLWEPWTIMNQSGSPYK----VFTPFYRKG--CLQAPSPR-SVTSAP 167
Query: 208 IDWDSIIAAVLRKGAE----VPEIGWCES-------GEDAAMEVLKGSKDGFLTKRLKNY 256
I + + L +G + +P+I W E GE+ A L FL + + +Y
Sbjct: 168 IQASYVYESALDEGIDSLNLMPDIPWYEQMQAHWQPGEEGAGIALSE----FLNQSINDY 223
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEAIDTFLEELIVRREL 314
R+ P S LSP+LHFG+IS + A + + +D FL E I RE
Sbjct: 224 KQARDVP-SLNGTSHLSPHLHFGEISPHQIWYATLHKFNGSMANADMDCFLSE-IGWREF 281
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
+ ++ P S ++ + + +D E +++ QT P+ +A E+
Sbjct: 282 SYYLLYHFPTLPSENFNPKFNQYHWRGRNNDL-------EAWQRGQTGVPIVDAGMRELW 334
Query: 375 YNGKMHGFMRM 385
G MH +RM
Sbjct: 335 QTGYMHNRVRM 345
>gi|423688023|ref|ZP_17662826.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri SR5]
gi|371492526|gb|EHN68132.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri SR5]
Length = 479
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 29/220 (13%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLE 306
F +++ Y +R+ P + + S LSPYL G ISA++CAL +A + D +L+
Sbjct: 222 FCRQKVSQYHNNRDYP-EIQGTSQLSPYLAIGAISAKQCALRLHLEANYELNQGEDIWLD 280
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
ELI RE + + PN + + + D+ D E++ K +T P+
Sbjct: 281 ELI-WREFYTHLLHFYPNLSKNQAFLSYDKYIEWDNNLDHF------ERWCKGETGFPIV 333
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A+ ++ G MH +RM A + ++W G + Y K IDG +
Sbjct: 334 DAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGEQ-------YFMSKL-IDGDFASN 385
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVD 461
G W C G P F R N +KFD D
Sbjct: 386 NGGWQW--CA--SVGCDSSPYF---RIFNPITQGKKFDAD 418
>gi|410861788|ref|YP_006977022.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
gi|410819050|gb|AFV85667.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
Length = 474
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 152/381 (39%), Gaps = 70/381 (18%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLRGL 86
+ W +D RV+DN AL A D VP+ + FD+ R G ++ L
Sbjct: 7 IMWFRQDLRVKDNPALNAACDMGKI--VPIYI----FDE-SAPDGRMPGGASKWWLHHSL 59
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
+ L + + QI F+G+ + IP + AS + + + P +I R K I
Sbjct: 60 KSLNKRLNGHLQI----FKGDPQTLIPKLMESFNASSIFWNRCYEPW-QINRDK-AIKKS 113
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP----IEK 200
+ DS +E + N +W + L+ R P Y +E+P
Sbjct: 114 LLDSD--YEAHSFNGSLLWEPMKVLKKDGTPYR----VFTPYYKNGCLQIEEPRYPKAPP 167
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLTKRL 253
T +D +S A L A +P I W ++ GED A + L F+
Sbjct: 168 ARITYADVDDNSDGLAAL---ALLPTIKWDDTIAKEWTPGEDGAADNLSD----FIENSA 220
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE--AIDTFLEELIVR 311
+ Y R+ P + S LSP+LHFG++S + A K R E +I+T+L EL
Sbjct: 221 RRYKDGRDIP-SAKGTSRLSPHLHFGEVSPNQVWY-AIKDRFGTSEDKSIETYLSEL-GW 277
Query: 312 RELADNFCFYQP-----NYDSL--KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
RE + F+ P N++ K W K+LK ++ T P
Sbjct: 278 REFSYYLLFHFPTLPNKNFNDKFDKFPWRTDAKALK--------------AWQTGNTGIP 323
Query: 365 LWNASQMEMVYNGKMHGFMRM 385
+ +A E+ G MH +RM
Sbjct: 324 IVDAGMRELWQTGYMHNRVRM 344
>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
Length = 476
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 178/455 (39%), Gaps = 62/455 (13%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL A VPV V F +G+ ++ ++ + +Q+ +
Sbjct: 8 MFQKDFRLYDNPALFEAAQSGEV--VPVYVQDETFS--IGSASK--WWLHHAIIDVQKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTI 151
E L + +G ++ I + + + + + + + P R K KI +
Sbjct: 62 EALGSTLI-IRKGNTQEEILSLIEQLNITAVYWNSCYDPDRLKSNQKMKIVLE-DKGIIC 119
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD 211
E ++H ++ W+ +K K N + ++ +PI K Q I
Sbjct: 120 KEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQRIKGG 169
Query: 212 SIIAAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKP 266
S + A L +P I W E +G+ F +L +Y R+ P
Sbjct: 170 SSLPASLSVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFSKLASYSEGRDFP-NE 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYH 287
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P ++ K+ + +K E + T ++K +T P +A E+ G MH
Sbjct: 288 YPF-----TVYKPLNKNFEHFPWNKEEELLT--VWQKGETGYPFIDAGMRELWQTGFMHN 340
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM + K +L W G A + D +D N +G W V G
Sbjct: 341 RARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSG 388
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
P F R N KFD DG Y+++ V
Sbjct: 389 ADASPYF---RIFNPITQGEKFDKDG--EYIRKWV 418
>gi|421626219|ref|ZP_16067048.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC098]
gi|408695490|gb|EKL41045.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC098]
Length = 480
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 103/457 (22%), Positives = 180/457 (39%), Gaps = 66/457 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
L + ++ I NF+ + + + EI + K V D + H
Sbjct: 67 SALHIPLVIQVIPDWKE-IANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNRHS 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPRCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ R++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLD--FLQRKNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVY 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P + S LSPYL+ G +S ++C + + L + T+L+EL+
Sbjct: 234 HYKVERDFP-HIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLINQGQQTWLDELLW 292
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 293 -REFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
W C G P F R N +KFD +G
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG 427
>gi|398830139|ref|ZP_10588333.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
gi|398215848|gb|EJN02409.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
Length = 489
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 163/407 (40%), Gaps = 70/407 (17%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---- 80
D K PV+ D R+ DN AL +A Q K PV F + D+ R LG
Sbjct: 10 DAKENPVIVLFRHDLRLADNRAL-YAAAQTGK---PVITVF-IRDEETSKSVRPLGGARQ 64
Query: 81 -FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV----TDFSPLREIR 135
++ L L R++ + Q L L +G + + N + + A +++ D + +
Sbjct: 65 WWLHHSLVSLTRSLAKLDQKLI-LRKGATQAIVRNLLDDTKADMVLWNRRYDPAGIEVDT 123
Query: 136 RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL---IDYP 192
K ++ R +T D H + Y KT G ++ + ++ P
Sbjct: 124 ALKAELLER---KITAESFDGHLL--------HEPYKLKTGAGGYYRVFTPFWRACLNGP 172
Query: 193 MLEQPIEKWTGTRQSIDWDS-IIAAVLRKGAEVP-EIGWCES-------GEDAAMEVLKG 243
P+ + ++ +W S I + L A +P + W + GE+ A E L
Sbjct: 173 EPRNPVPE---PKKLRNWSSDITSDELDDWALLPTKPDWAKGFDENWTPGEEGAREKLSD 229
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA-QRCALEARKARKLCPEAID 302
FL R+ +Y R+ P A S LSP+L G+I+ Q A K +D
Sbjct: 230 ----FLDDRVPSYKNGRDIP-GTEATSRLSPHLAHGEITPFQIWHASKSPAIKDQNGGLD 284
Query: 303 TFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
TFL+E + RE + + F P N++ +EW+RK + + ++
Sbjct: 285 TFLKE-VGWREFSYHLLFNNPKLHTENFNKSFDGFEWSRK------------VSHFDAWK 331
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPE 399
+ T P+ +A ++ G MH +RM A +++W G E
Sbjct: 332 QGNTGYPIVDAGMRQLWQTGWMHNRVRMIAASFLIKHLLIDWRKGEE 378
>gi|445405991|ref|ZP_21431586.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-57]
gi|444781769|gb|ELX05684.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-57]
Length = 480
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 187/466 (40%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
L + ++ I NF+ + + + + EI + K V D + H
Sbjct: 67 AALHIPLVIQVIPDWKE-IANFISDFSKTYNIENVYANIEIGVNELKRDKTVQDYLNQHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W S E A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSISKEQQDLWPVS-EQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P + S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKVERDFP-HIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKNTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|387887266|ref|YP_006317565.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386872082|gb|AFJ44089.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 464
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GEDA+ ++L + FL ++K Y T R+ + + S LSPYLHF
Sbjct: 184 PKLSWQNIIDQWQIGEDASHQIL----EEFLDNKVKEYKTARD-FMSTDSTSKLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKS 338
G+IS + A + F++EL+ R +F +YQ Y E K+
Sbjct: 239 GEISPNQI-FNAVQNLDYIGNNEKHFIKELVWR-----DFSYYQIYYYP-----ELHNKN 287
Query: 339 LKDHASDKR--EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + + ++++ QT P+ +A E+ G MH +RM
Sbjct: 288 INQKFDNFEWDNNPTLLKKWQTGQTGIPIVDAGMRELWQTGYMHNRVRM 336
>gi|217976568|ref|YP_002360715.1| deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
Length = 486
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 142/387 (36%), Gaps = 62/387 (16%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD-----QFLGAKARQLG 80
K + + W D R+ DN AL A+ P+ + L D + LG AR
Sbjct: 5 KTQNTAIVWFRDDLRLADNEALAAALSTGG----PLLCVYILEDGTAGFRPLGGAARW-- 58
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL-----------LVTDFS 129
++ L+ L ++I L LF GEA +P GA + + D +
Sbjct: 59 WLHHSLQALGQDIAAKGGRLD-LFCGEARRILPALAEAAGARIICWTRRYGGPEMAVDAA 117
Query: 130 PLREIR----RCKDKICNRVSDSVTIHEVDAHNV---VPVWVASEKLEYSAKTLRGKINK 182
+ + K + + + I D H P W A+ + L ++
Sbjct: 118 LKAQFKTSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPAP-DR 176
Query: 183 LLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
L + + IE + DW + A R GE+ A E LK
Sbjct: 177 LPAAPIPRGALRTTSIEALALLPEKPDWAGGLRAAWR------------PGENGAQERLK 224
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA-RKLCPEAI 301
FL + +Y +RN P A+S LSP+L FG+I ++ R A +
Sbjct: 225 A----FLEGEIASYSLERNRP-SADAVSRLSPHLRFGEIGPRQIFAAVRTAWDNAAQKGG 279
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLK---DHASDKREHIYTKEQFEK 358
FL EL RE + FY P+ AR++++ D + +++
Sbjct: 280 VKFLAEL-GWREFNYHLSFYHPDA---------ARQNIQRRFDKMPWREPAPRELSAWQR 329
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRM 385
+T PL +A E+ G MH +RM
Sbjct: 330 GETGYPLIDAGMRELWATGYMHNRVRM 356
>gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3]
gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3]
Length = 479
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 117/299 (39%), Gaps = 51/299 (17%)
Query: 185 PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
P D P + E W+ + + DW ++ + EI W GE+AA E L
Sbjct: 162 PHTPADAPQSLKAPETWSKSEKLDDW-KLLPVKPDWAKDFSEI-WT-PGENAAREKL--- 215
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAID 302
D F+ LK Y R+ P K A S L+P+L G+IS A K +R + I
Sbjct: 216 -DDFIDGALKGYEEGRDFPAK-DATSLLAPHLALGEISPA-AVWHATKGLSRHIASNDIS 272
Query: 303 TFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
F +EL V RE + F+ P N++ GA+ W R+ + +
Sbjct: 273 RFRKEL-VWREFCYHLLFHFPELDEKNWNDSFGAFGW------------RDDDTSFNAWT 319
Query: 358 KAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKY 412
+ T P+ +A ++ +G MH +RM A +++W G + + D
Sbjct: 320 RGMTGYPIVDAGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEK-------WFRDTL 372
Query: 413 EIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+D + W V G P F R N KFD +G YV+R V
Sbjct: 373 -VDADPASNAANWQW----VAGSGADASPFF---RIFNPILQGEKFDAEG--DYVRRFV 421
>gi|357409762|ref|YP_004921498.1| deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
33331]
gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
33331]
Length = 459
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 48/263 (18%)
Query: 219 RKGAEVPEIGWCESGEDAAMEVLKG-SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLH 277
R G G E GE + +DG L +Y DR++ + A S LSP+LH
Sbjct: 187 RAGTRGLSPGLAEGGETEGRRLFTAWRRDG-----LASY-EDRHDDMAGDATSRLSPHLH 240
Query: 278 FGQISAQRCALEARKARKLCPEAIDTFLEELIVR----RELADNFCFYQPNYDSLKGAWE 333
FG +S +AR + F+ ++ R + LA + +Y + W
Sbjct: 241 FGTLSPTEL---VHRARATGGPGAEAFVRQVCWRDFHHQVLATRPAVSRSDYRPKQDRWR 297
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAK 389
R + D A+ +++ +T P+ +A+ ++++ G MH R+ + AK
Sbjct: 298 TGRAAEADTAA-----------WKEGRTGYPVVDAAMRQLLHEGWMHNRGRLLTASFLAK 346
Query: 390 KI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
+ ++W TG L + +DG N + W V G RP R
Sbjct: 347 TLYVDWRTGARHFLELL--------VDGDIANNQLNWQW----VAGTGTDSRP----NRV 390
Query: 449 MNYSGCKRKFDVDGYIAYVKRIV 471
+N +++D +G AYV+R V
Sbjct: 391 LNPVTQAKRYDPEG--AYVRRWV 411
>gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
2.4.1]
gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
2.4.1]
Length = 471
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 113/287 (39%), Gaps = 46/287 (16%)
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEV--PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+W + + WD + + +GA V P + GE AA E L FL+ L Y
Sbjct: 175 EWPVSERLACWD--LGRAMHRGAAVVAPHLA---VGEAAAAERLTR----FLSGPLDRYA 225
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+R+ P P S LS L +G+ISA+ +AR + FL+EL RE +
Sbjct: 226 AERDRPDAP-VTSRLSENLTYGEISARSLWHAGMRARAEGRAGAEKFLQEL-AWREFGWH 283
Query: 318 FCFYQPNYD--SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
++ P + +G W+ A R E++ + T +P +A+ E+
Sbjct: 284 LLYHTPEIARRNWRGDWD---------AFPWRGDNPDAERWRRGMTGEPFVDAAMRELFV 334
Query: 376 NGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
G MH R+ Y K +L +W G + D ID + +G W
Sbjct: 335 TGTMHNRARLIAGSYLTKHLLTDWRVG-------QAWFEDCL-IDWDPASNALGWQW--- 383
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
V G P F R N + KFD + AY +R + +R
Sbjct: 384 -VAGSGPDASPYF---RIFNPATQAEKFDPES--AYRQRFLAEIARR 424
>gi|407771650|ref|ZP_11119003.1| Deoxyribodipyrimidine photolyase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407285351|gb|EKF10854.1| Deoxyribodipyrimidine photolyase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 494
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE AM+ L DG RL +Y R+ P R S LSP+L FG+IS ++ A
Sbjct: 219 GEQGAMDQLHDFIDG----RLSDYADLRDRP-DHRVTSELSPHLRFGEISPRQVWHAANH 273
Query: 293 ARKLCP---EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
P + F+ EL RE A + F+ + S+ + D D +
Sbjct: 274 YADAHPGQGKTASKFMAEL-GWREFAHHILFHARDLKSVP-----LQGQFTDFPWD--DD 325
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
E++++ QT P+ +A E+ + G MH +RM
Sbjct: 326 PKALERWQRGQTGFPIVDAGMRELWHTGYMHNRVRM 361
>gi|379731644|ref|YP_005323840.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
gi|378577255|gb|AFC26256.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
Length = 445
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 181/481 (37%), Gaps = 102/481 (21%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF----NLFDQFLGAKARQLGFMLRGLR 87
++W RD R+ DN AL A+ K PV F N+ + + ++ F+ + L+
Sbjct: 5 IFWHRRDLRLNDNAALYQAL----KAGGPVLSIFIFDQNILEDLNNRQDARVDFIHQELQ 60
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSP--------LREIRRC 137
LQ+ + E L L+ G + +++ + T D+ P + E+ +
Sbjct: 61 RLQKELRELGSDLLVLY-GRPQAVWTQLLQDWSIEKVYTNRDYEPYAKKRDAAIAELLQK 119
Query: 138 KDKICNRVSDSVTIHEVDAHNVVP----VWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
++ D V E++ V+ K ++ AK K YL YP
Sbjct: 120 ENIPLLTKKDHVIFEELEVEKKTSGPYTVFTPYSK-QWKAKLDSKKTAAGESFYLQSYPN 178
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
E + S+ + I ++ +G+ S + +LK KR+
Sbjct: 179 -----ENYQQNYASLPGNFEIPSL-------ESMGFAPSQLNFPSRLLK-------QKRI 219
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR-- 311
K Y RN P S L + FG IS + +ARKARKL T+L ELI R
Sbjct: 220 KKYEETRNFPALEEGTSRLGLHFRFGTISIRE---KARKARKLNA----TYLNELIWRDF 272
Query: 312 -RELADNFC-----FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE---KAQTA 362
++ NF ++P YD + EW +E+FE + +T
Sbjct: 273 YAQILANFPKVVGQSFRPQYDQI----EWRN---------------NEEEFEAWCQGKTG 313
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGR 417
PL +A E+ G MH +RM A +++W G A + + D
Sbjct: 314 YPLVDAGMRELNATGYMHNRVRMLVASFLCKHLLIDWRWGE------AYFAEKLLDFDLA 367
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
NG G W+ D P F R + +KFD + + YVK+ V R
Sbjct: 368 SNNG--GWQWAAGSGTDAA----PYF---RIFSPESQLKKFDAE--LKYVKKWVKEYGSR 416
Query: 478 R 478
R
Sbjct: 417 R 417
>gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 581
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 103/424 (24%), Positives = 183/424 (43%), Gaps = 79/424 (18%)
Query: 23 SLDKKRG-----PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR 77
+ DK+R VV+W D R+ D+ AL A A ++ VP+ + + + A +
Sbjct: 80 TADKRRSINVGSAVVHWFKSDLRLHDSRALYAAYQFAKEHQVPLIGLYVVSPEDWTAHST 139
Query: 78 ---QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS- 129
++ F LR L+ LQ+++ E I ++ + IPN + E GA L +
Sbjct: 140 SPARVDFTLRTLKRLQQDLGE-LDIPLYMETQDKRKTIPNRIVELCQQWGAKSLYANIEY 198
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHN---VVPVWVASEK-LEYSAKT--LRGKINKL 183
+ E+RR + K+ +D+ I+ +H+ V P +AS++ +YS T R + L
Sbjct: 199 EVDELRR-EAKLVRLCADN-DINFTPSHDTCVVTPGALASQQGKQYSVYTPWYRSWLAFL 256
Query: 184 L--PEYLIDYPMLEQPIEKWTGTRQSID--WDSIIAAVLRKGAEVPE-----IGWCESGE 234
P+YL + E+P RQ +D + A + E G +GE
Sbjct: 257 KENPDYL---EVSEEPGSNPGNARQQFKDFFDCNVPAAPNTHILLDEEQKRFEGLYPAGE 313
Query: 235 DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR 294
A++ L D FL ++ K Y R+ L + S LSPY G +SA+ A++
Sbjct: 314 HEALQRL----DNFLEEKGKEYEETRSM-LSGESTSVLSPYFACGALSARTAVATAKRIN 368
Query: 295 KLCPEAID----TFLEELIVR---RELADNFCF------YQPNYDSLKGAWEWARKSLKD 341
K + + T++ EL R + + N+ F ++P + +++ WE
Sbjct: 369 KGHIDRYNPGYMTWISELAWRDFYKHVLVNWPFICMNKCFKPEHTNIE--WE-------- 418
Query: 342 HASDKREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKI-LE 393
Y K+QF+ +T P+ +A+ ++ + MH RM ++ K + L+
Sbjct: 419 ---------YDKDQFQAWCDGKTGFPIVDAAMRQLRHCAWMHNRTRMVVSSFFTKDLMLD 469
Query: 394 WTTG 397
W G
Sbjct: 470 WRRG 473
>gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis]
Length = 862
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 154/394 (39%), Gaps = 78/394 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF----------NLFDQFLGAKARQL 79
PV+ W RD R+ DN ALI A++ VPV F N GA L
Sbjct: 231 PVLVWFRRDLRLHDNPALISALEHG----VPVIPVFLWCINEETGQNFTLATGGATKYWL 286
Query: 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP-LRE--- 133
L L+L Q I+ + F E+ + + V E GA ++ + + P L+E
Sbjct: 287 HHAL--LKLNQSLIQRFGSHIIFRVARSCEEELVSLVHETGADTIIINAVYEPWLKERDD 344
Query: 134 -----IRRCKDKI------CNRVSDSVTIHEVDAHNV--VPVWVASEKLEYSA------- 173
+RR ++ C DSV+ V + V +++ K SA
Sbjct: 345 LISETLRRHGVELKKHHSYCLYEPDSVSTEGVGLRGIGSVSHFMSCCKRNNSAPIGMPLD 404
Query: 174 --KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCE 231
+ L N ++L + + P K GT IDW A +R+ W +
Sbjct: 405 APRCLPAPCNWPESDHLDTLELGKMPHRK-DGTL--IDW----AVTIRES-------W-D 449
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
ED A L FL +K+Y + KP S +SPYLHFGQIS + EA
Sbjct: 450 FSEDGAYTCLAN----FLQDGVKHYEKESGRADKPYT-SHISPYLHFGQISPRTVLHEAY 504
Query: 292 KARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHA-SDKREHI 350
+K P+ FL +L R+LA P+ S E R + K S H+
Sbjct: 505 FTKKNVPK----FLRKL-AWRDLAYWLLILFPDMPS-----EPVRPAYKSQRWSSDLNHL 554
Query: 351 YTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
++K T PL +A+ E+ G M + R
Sbjct: 555 ---RAWQKGLTGYPLVDAAMRELWLTGWMCNYSR 585
>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
Length = 455
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 144/363 (39%), Gaps = 38/363 (10%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGL 86
P + W +D R+ D AL+ A + PV + L D+ G Q ++ L
Sbjct: 4 PHIVWFRQDLRLHDQPALLAAAEAG-----PVLPVYILDDETPGDWKMGGAQRWWLHHSL 58
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNR 144
L ++++ L L +G A + + +E GA + + + P R+ +D++ +R
Sbjct: 59 EALAKDLKALGSRLI-LRRGRAVEVLQALSKEAGAEAIHAIRHYEPW--WRKAEDELGDR 115
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+ H V + + + +G + PE+ ++ P ++W +
Sbjct: 116 LCLYDGNHLARPELVTTG--SGKPFRIYSAFWKGLQGHMPPEHPLEAPDALTAPDRWPAS 173
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ DWD + + + W GE A E + + Y T RN P
Sbjct: 174 DKLADWD--LLPTKPDWSTGFDADWT-PGEATARERMAD-----FVAKAAAYDTARNMPS 225
Query: 265 KPRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
+ S LSP+LHFG++S + AL+ RKA +TF +EL R+ D
Sbjct: 226 E-EGSSRLSPHLHFGEVSPRAVWHALD-RKAE------TETFRKEL-AWRDFTDGVVMAI 276
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382
P+Y G + + + A + + + + T P+ +A ++ G MH
Sbjct: 277 PDYADRNGREAFDKMPWRKGAEAEAD----LKAWRTGHTGYPIVDAGMRQLWTTGWMHNR 332
Query: 383 MRM 385
+RM
Sbjct: 333 VRM 335
>gi|149187439|ref|ZP_01865737.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
gi|148838975|gb|EDL55914.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
Length = 467
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKAR 294
+ E+++ +D F + Y +R+ P + S LSPYL G ISA++C L+ A
Sbjct: 202 SHEIIQQLRD-FSADKANLYHAERDFP-ALDSTSMLSPYLAIGAISARQCVARLKYDAAN 259
Query: 295 KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
+T+L ELI RE + +++P G W K LK + K +H +
Sbjct: 260 TSLSTGAETWLSELI-WREFYQHLIYFEPKLCKHHGYLSW-EKHLK--WTGKLDHF---K 312
Query: 355 QFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
Q+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 QWCEGKTGYPIVDAAMRQLNTKGWMHNRLRM 343
>gi|404260535|ref|ZP_10963820.1| deoxyribodipyrimidine photo-lyase [Gordonia namibiensis NBRC
108229]
gi|403400974|dbj|GAC02230.1| deoxyribodipyrimidine photo-lyase [Gordonia namibiensis NBRC
108229]
Length = 428
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 167/449 (37%), Gaps = 60/449 (13%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W+ RD R+ D AL A + + + V ++ G R+L F+ LR + +
Sbjct: 2 WLRRDLRLSDLPALSTARGTDDSSVLLCFVVDPRLEKSSGE--RRLAFLFDSLREVDAKL 59
Query: 94 EETFQILFFLFQGEAEDNIPNFVR--ECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI 151
+ ++ +G ++ IP + + A + DF+P RR + + + +
Sbjct: 60 DGKLLVV----RGRPDEEIPRLAKVVDAEAVHISADFTPFG--RRRDEAVAEALGEIPLE 113
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM--LEQPIEKWTGTRQSID 209
+ V P + + G+ K+ Y + +P + +D
Sbjct: 114 ATGSPYLVSPGRITKDD---------GEPYKVFSPYFRRWHQHGWRKPADSSIPGSAVLD 164
Query: 210 WDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
+ + E P +GEDAA+ F+ L +Y T RN+P
Sbjct: 165 PSQVTKSARITIPEAPTTLSFPAGEDAALARWAE----FVDDDLAHYDTGRNDPAA-DVT 219
Query: 270 SGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLK 329
S +S YL +G I + L A A+ P+A +L EL R AD F+ P+
Sbjct: 220 SRMSAYLKYGNIHPR--TLAADLAKGDGPQA---YLRELAFRDFYAD-VLFHWPH----- 268
Query: 330 GAWE-WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
W W R+ + E ++ +T PL +A ++ G MH +RM A
Sbjct: 269 SLWHNWNRQFDDIELDTDDDAYERFEAWKAGRTGFPLVDAGMRQLAETGWMHNRVRMVTA 328
Query: 389 KKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVF 443
+ L W G E + D+ +DG + G W+ D P F
Sbjct: 329 SFLVKDLHLPWWWGAE-------WFLDQL-VDGDMASNNHGWQWAAGTGTDAA----PYF 376
Query: 444 GKIRYMNYSGCKRKFDVDGYIAYVKRIVG 472
R N +KFD G YV+R VG
Sbjct: 377 ---RVFNPEAQAKKFDPKG--EYVRRWVG 400
>gi|407775677|ref|ZP_11122970.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
gi|407281354|gb|EKF06917.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
Length = 492
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 148/396 (37%), Gaps = 76/396 (19%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNN---VPVAVAFNLFDQFLGAKARQLGFML 83
+R V W D R+ DN AL+ AV A +N+ +PV + ++ LG + ++
Sbjct: 3 ERPIAVMWFRNDLRLADNPALLAAVKWAKENDGAVLPVFILDDVISDQLGGATKW--WLE 60
Query: 84 RGLRLLQRNIEETFQI----LFFLFQGEAEDNIPNF-----VRECGASLLVTDFSPLREI 134
+ L L RNI + LF+G A+ + V+ + L S R+
Sbjct: 61 KSLTALNRNIADLGDTKSDRALRLFKGNAKTVLETIADDKSVKAVFWNRLYDKPSTKRDT 120
Query: 135 R----------RCKDKICNRVS---DSVTIHEVDAHNVVPVWVASEKLEY---------S 172
C+ N + D T + D P W A KL S
Sbjct: 121 EIKAALQNHGLTCESHKANLLFEPWDVKTGSDTDFKVYSPFWRACLKLPTPREPKSAPES 180
Query: 173 AKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES 232
+G++++ + + D+ + +P+ W G +
Sbjct: 181 LALFKGEVDEQI--NIADFDLSPKPV-NWAGGLEER---------------------FSP 216
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A + L F+ RL +Y R+ P + R S LSP+L FG+IS + A
Sbjct: 217 GEQGAKDQLFD----FIDDRLTDYADLRDRPDR-RVTSELSPHLRFGEISPYQVWHAANH 271
Query: 293 ARKLCP---EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
P + F+ EL RE A + ++ + S+ ++ D A R
Sbjct: 272 YADANPGKGKTASKFIAEL-GWREFAHHILYHATDLRSVPLQGQFKHFPWSDDAKGLR-- 328
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++K QT P+ +A E+ + G MH +RM
Sbjct: 329 -----AWQKGQTGFPIVDAGMRELWHTGYMHNRVRM 359
>gi|374608373|ref|ZP_09681172.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium tusciae JS617]
gi|373553905|gb|EHP80492.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium tusciae JS617]
Length = 430
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 149/408 (36%), Gaps = 66/408 (16%)
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREI 134
R+L ++ LR + N+ + G E IP + GAS + D+SP
Sbjct: 46 RRLQYLYDALRDVDDNLCGRLHVS----HGHPEKRIPALAKAIGASAVHVSADYSPFG-- 99
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
RR D + + ++ + V P V + G K+ + +
Sbjct: 100 RRRDDAVRDAMAGVALEASGSPYLVSPGRVTKDD---------GTPYKVFTPFFAAWRER 150
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW---CESGEDAAMEVLKGSKDGFLTK 251
+G +S W I + G ++P++G +GE AA K F+ K
Sbjct: 151 GWRSPASSGA-ESARW--IDPKDVPGGVKIPDLGVELELPAGERAARRQWKS----FVRK 203
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
+L Y RN P P A S +S +L FG I + + K+ + +L EL R
Sbjct: 204 QLDGYAEGRNRPDLP-ATSRMSAHLKFGTIHPRTMVADLGKS-----AGAEAYLRELAFR 257
Query: 312 RELADNFCFYQPNYDSLKGA--WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
FY + W W + K D + + ++ +T P+ +A
Sbjct: 258 D-------FYAAVLHEWPDSAWWNWNKSFDKIEVDDDEDARAMFDAWKAGRTGFPIVDAG 310
Query: 370 QMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
++ G MH +RM A + L W G A + D+ +DG N G
Sbjct: 311 MRQLAETGFMHNRVRMIAASFLVKDLHLPWQWG-------ARWFLDQL-VDGDMANNQHG 362
Query: 425 CMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W+ CG P F R N + KFD DG YV+R V
Sbjct: 363 WQWAAGCGT-----DAAPYF---RVFNPTTQGEKFDPDG--EYVRRWV 400
>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|424808742|ref|ZP_18234131.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|342323694|gb|EGU19477.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
Length = 469
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
EV++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESAMS 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
E +L ELI RE + +PN + EW + + S+K ++
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEK------FQR 317
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + T P+ +A+ ++ G MH +RM
Sbjct: 318 WCEGNTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 111/488 (22%), Positives = 197/488 (40%), Gaps = 66/488 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+++W RD R+ DN L A + K + N+ ++ A AR + ++L L L+
Sbjct: 2 IIFWHRRDLRINDNIGLAKAYTRDKKVIGVFCLDPNILNRDDIAPAR-VKYLLGCLEALK 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGA-----SLLVTDFSPLREIRRCKDKICNRV 145
++ L +F E+ IP+ + A +L V FS R+ + + +
Sbjct: 61 TKYQKLGSDL-LIFHNTPEEIIPSLAEKLKADAVYWNLDVEPFSRHRD-KNVSQALKEKS 118
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKT-------LRGKINKL-LPEYLIDYPMLEQP 197
++ T + H+ + S + Y+ T + K + + P+ L LE+
Sbjct: 119 IETQTFWDQLLHSPGEILSKSNQTAYTVYTPFWRNWEAQPKSSPVDSPQQLTGLNDLEKT 178
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
I K GT I+ S+ A++P GE++A+E L + F + NY
Sbjct: 179 IVKELGT---INIPSLNDLGFPWDADLP----LSPGEESALERL----EYFCQSLIYNYE 227
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC--PEAIDTFL--EELIVRRE 313
DRN P S LS L FG IS + +++ C EA + + ++ I RE
Sbjct: 228 CDRNYPFL-DGTSQLSAALKFGAISVRTIWKKSQAELTNCNSDEARENIIAWQKEIAWRE 286
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
+ ++ P +GA+ R+ K + E + + + + +T P+ +A+ ++
Sbjct: 287 FYQHCLYFFPQL--AEGAY---REQFKQFPWENDEKKF--QAWCEGKTGYPIVDAAMRQL 339
Query: 374 VYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
G MH RM A I++W G + ++ Y+ D NG G WS
Sbjct: 340 NETGWMHNRCRMIVASFLTKDLIIDWRWGEK------YFMQKLYDGDLAANNG--GWQWS 391
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGK-- 486
G +P +R N + +KFD + Y++ + + LV+GK
Sbjct: 392 ASS----GMDPKP----LRIFNPASQAQKFDPEA--EYIRTWLPEIRHLDTKDLVTGKIS 441
Query: 487 --EKELCG 492
E CG
Sbjct: 442 PLEASSCG 449
>gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
Length = 522
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 219 RKGAEVPEI--GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
R G ++P GW SGE A L F+ L++Y T R+ S LSPY+
Sbjct: 244 RVGTQMPPALPGWT-SGEQCAHTNLHR----FIENALEDYETQRDRTDATHGTSLLSPYI 298
Query: 277 HFGQISAQRCALEARKARKLCPE-AIDT--FLEELIVRRELADNFCFYQPNYDSLKGAWE 333
GQIS ++ R A L P+ A D FL EL R+ A F P+ + E
Sbjct: 299 RVGQISVRQIWHAIRHAAHLHPQLATDAEKFLAEL-GWRDFAWMQMFTTPDLATRNLRAE 357
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + A+D +++ QT PL +A ++ G MH +RM
Sbjct: 358 FNHMPWRTDATD-------LAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRM 402
>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
Length = 469
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
EV++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESAMS 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
E +L ELI RE + +PN + EW + + S+K ++
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEK------FQR 317
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + T P+ +A+ ++ G MH +RM
Sbjct: 318 WCEGNTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|430761658|ref|YP_007217515.1| Deoxyribodipyrimidine photolyase [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430011282|gb|AGA34034.1| Deoxyribodipyrimidine photolyase [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 489
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 99/246 (40%), Gaps = 38/246 (15%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ L+ FL + Y R+ P +P S +SP+LHFG+IS ++ R
Sbjct: 216 GEAGALVRLRD----FLETSAERYHAMRDLPGQP-GTSRVSPHLHFGEISPRQIVRALRD 270
Query: 293 ARKLCPEA--IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHI 350
A P++ D FL E I RE A + F+ P+ A + + A RE
Sbjct: 271 A-GFDPDSGGADQFLSE-IGWREFAHHLLFHFPHTTG-------APLNPRFEAFPWRESD 321
Query: 351 YTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIA 405
+++ +T P+ +A E+ G MH RM A + + W G A
Sbjct: 322 RDLHAWQQGRTGIPIVDAGMRELWQTGWMHNRTRMIVASLLTKNLRMHWLHG-------A 374
Query: 406 IYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIA 465
+ D +D + +G W+ D P F R N +FD DG
Sbjct: 375 RWFWDTL-VDADLASNTLGWQWTAGSGADAA----PYF---RVFNPVLQGERFDPDG--C 424
Query: 466 YVKRIV 471
YV+R V
Sbjct: 425 YVRRYV 430
>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 483
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 45/199 (22%)
Query: 224 VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P+I W + GE A+ L F+ + + +Y RN P + + S LSPYL
Sbjct: 187 LPDIDWAAGFTELWQPGEAGALARLAE----FMDEAVADYDEMRNRPDRDGS-SRLSPYL 241
Query: 277 HFGQISAQRCALEARKAR-----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGA 331
HFG+I ++ A + A+ K + ID+FL E I RE A + ++ P
Sbjct: 242 HFGEIGPRQAAAACQVAKDRHGGKAAHQGIDSFLRE-IGWREFAHHLLYHFPR------- 293
Query: 332 WEWARKSLKDHASDKREHIY--------TKEQFEKAQTADPLWNASQMEMVYNGKMHGFM 383
D D R T +++ +T PL +A+ + G MH +
Sbjct: 294 -------TSDEPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRV 346
Query: 384 RMYWAKKILE-----WTTG 397
RM A + + W TG
Sbjct: 347 RMIVASLLTKNLGAHWLTG 365
>gi|406707087|ref|YP_006757439.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
gi|406652863|gb|AFS48262.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
Length = 447
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE AA + L +L + Y R+ P + S LSPYL FG+IS + L K
Sbjct: 182 GEKAAQDQL----SRYLKTDIDIYKDARDRPDLDQT-SKLSPYLRFGEISPRTVVLNILK 236
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
++ L + T+L E I RE + + +Y N S+ +LK R+ +
Sbjct: 237 SKNLSTSVL-TYLSE-IGWREFSYSLLYYSKNLSSVP-------INLKFQNFPWRKSVKD 287
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKK-ILEWTTGPE 399
+ ++ +T PL +A+ ++ G MH +RM + K +L WT G +
Sbjct: 288 LDLWKSGKTGIPLVDAAMRQIYEKGWMHNRLRMVVGSFLVKNLLLNWTLGEQ 339
>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 92/423 (21%), Positives = 162/423 (38%), Gaps = 62/423 (14%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNV--------------PVAVAFNLFDQFLGAKAR 77
+ W D R+ DN +LI + AN +N P F+ +F A A
Sbjct: 12 LLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGKFRKANAN 71
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
+ F+ + L++N+ + + + G E+ IP+ + + D +E+
Sbjct: 72 RTRFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHLCSQYEIEQVFAD----KEVTSE 127
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE-Q 196
+ I + + ++ ++V V K+E K+ LI P+L+
Sbjct: 128 ETSIEQVLEKQINVNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKVENPKLIVRPLLQLS 187
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK---------GSKDG 247
P EK + + ++ A L K ++ +G+ + ME LK G +D
Sbjct: 188 PNEKKLISSRVVNLIQDENA-LGKTPDLKVLGYTDEEISEMMENLKDPRSVLHFKGGEDE 246
Query: 248 FLTK---------RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
L + RLK Y RN + S LSP+L G IS ++ E ++ K
Sbjct: 247 ALARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPRKIYHEVKRYEKERV 306
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDS----LKGAWEWARKS---LKDHASDKREHIY 351
E T+ LI D F F+ + + LKG + K + D +S+K E Y
Sbjct: 307 ENDSTYW--LIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKGLIGDSSSNKVESKY 364
Query: 352 TKEQFEK----------AQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTT 396
+ ++++ +T P +A+ E+ +G M R A + L+W
Sbjct: 365 DETRWKQDLKLFKLWADGKTGLPFVDANMRELKISGWMSNRGRQNVASFLSKDLNLDWRL 424
Query: 397 GPE 399
G E
Sbjct: 425 GAE 427
>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
Length = 469
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
EV++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESAMS 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
E +L ELI RE + +PN + EW + + S+K ++
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEK------FQR 317
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + T P+ +A+ ++ G MH +RM
Sbjct: 318 WCEGNTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces ambofaciens
ATCC 23877]
Length = 457
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 106/268 (39%), Gaps = 40/268 (14%)
Query: 211 DSIIAAVLRKGAEVPEI--GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
D + L AEVP G + GE A + ++ + DR++ L A
Sbjct: 175 DGVRGGPLPDRAEVPGTSPGLPDGGETAGRDRFS-----LWSRAGMSAYEDRHDDLAGDA 229
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
S LSPYLHFG +SA AR R+ P A + F+ +L R F+ +
Sbjct: 230 TSRLSPYLHFGALSAVELVHRAR--RRGGPGA-EAFVRQLCWR-------DFHHQVLAAR 279
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388
A ++ DH +++ + + +T P+ +A+ ++ + G MH R+ A
Sbjct: 280 PKASAEDYRTRHDHWRGEKDAAADISAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVA 339
Query: 389 KKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVF 443
+ ++W G L + +DG N + W V G RP
Sbjct: 340 SFLTKTLYVDWRIGARHFLDLL--------VDGDIVNNQLNWQW----VAGTGTDTRP-- 385
Query: 444 GKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
R +N R+FD DG AYV R V
Sbjct: 386 --HRVLNPVVQGRRFDPDG--AYVHRWV 409
>gi|421655515|ref|ZP_16095838.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-72]
gi|408508840|gb|EKK10519.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-72]
Length = 480
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 187/466 (40%), Gaps = 68/466 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
L + ++ I NF+ + + + + EI + K V D + H
Sbjct: 67 AALHIPLVIQVIPDWKE-IANFISDFSKTYNIENVYANIEIGVNELKRDKTVQDYLNQHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W S E A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSISKEQQDLWPVS-EQYALEQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P + S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKLERDFP-HIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKNTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+++ G MH +RM A +++W G + + ++ IDG G
Sbjct: 346 RQLLQTGWMHNRVRMITAIFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANNGGW 397
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
W C G P F R N +KFD +G Y+++ V
Sbjct: 398 QW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
Length = 477
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 120/498 (24%), Positives = 182/498 (36%), Gaps = 100/498 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---------GAKARQLGF 81
V++W RD R+ DN + AV+ + P + D L A AR L F
Sbjct: 6 VLFWHRRDLRLADNLGIQAAVEIS-----PAVTGVYVLDPALIHPPQALPPMAPAR-LWF 59
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI 141
+L L LQ+ L L +G+ +P A +V + R ++
Sbjct: 60 LLESLIELQQRWRAAGSRLLIL-EGDPVQMLPPLAERLSAEAVVWNRDVEPYSRERDRQV 118
Query: 142 CNRVSDSVTIHEVDAHNVVPVW----VASEKLEYSA-----------KTLRGKINKLLPE 186
R+ + D VV W +A E L+ A + RGK+ P
Sbjct: 119 AKRL-------QADGRQVVVDWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPT 171
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIA------AVLRK--GAEVPEIGWCESGEDAAM 238
IE +G +D DS + A LR G + EI C GE AA+
Sbjct: 172 T----------IEAPSGL---VDLDSSLVPEGDPLAALRHDHGFQGTEICPCRPGESAAL 218
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
E L DG L+ Y DRN P S LS L G +S ++ A++ R
Sbjct: 219 EQLTCFADGALSA----YEPDRNFP-NVVGTSYLSAALSVGTLSPRQAWCAAQQGRDHAR 273
Query: 299 E-----AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
AI + +EL RE F+ P +W R +++ E ++
Sbjct: 274 SDEQRTAIAVWEQEL-GWREFYQQALFHFPELADGPYREQWRRFPWENN-----EAWFSS 327
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYL 408
+ T P+ +A+ ++ +G MH RM A I +W G E A
Sbjct: 328 --WRDGMTGMPIIDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWG-ERAFM----- 379
Query: 409 NDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVK 468
+ E+DG G WS G +P +R N + KFD DG Y++
Sbjct: 380 --ELEVDGDLAANNGGWQWSASS----GMDPKP----LRIFNPATQATKFDADG--DYIR 427
Query: 469 RIVGGTKKRRADSLVSGK 486
R + + L++G+
Sbjct: 428 RWLPELRHVNTKDLLTGE 445
>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
Length = 470
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 153/394 (38%), Gaps = 87/394 (22%)
Query: 105 QGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVP 161
G+A D IP R G S + T D+ P +R ++ ++ +D + H V +
Sbjct: 79 HGQAVDEIPALARRLGVSAVFTNRDYEP--SAKRRDAQVARQLRNDDIAFHGVKDQAIFD 136
Query: 162 VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKG 221
E L + K + + P +++ T T W ++
Sbjct: 137 ---GDEVLTQAGKA-----------FSVFTPYKNAWLKRLT-TADYAAWPCDGRLAGQEL 181
Query: 222 AEVP---EIGW-----CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
A +P EIG+ E G M KG D F R++ Y + R+ P + +S LS
Sbjct: 182 AGIPTLEEIGFTPTDLAELGIQPGMSGAKGLWDDFSRDRIERYGSLRDFP-AVKGVSYLS 240
Query: 274 PYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR---ELADNFCF-----YQPNY 325
+L FG IS ++ R+ DT+L ELI R + D+F ++P Y
Sbjct: 241 VHLRFGTISIRQLV------RQALAHQADTWLSELIWRDFYFMILDHFPHVAGHAFKPEY 294
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGF 382
D++ +WA + E F + T PL +A+ ++ ++G MH
Sbjct: 295 DAI----QWASRP---------------EAFAAWCEGCTGYPLVDAAMRQLNFSGWMHNR 335
Query: 383 MRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGW 437
+RM A + ++W G + A LND D NG G W+ G
Sbjct: 336 LRMVVASFLTKDLGIDWRLGEK---YFAEQLND---FDLSANNG--GWQWA----SSSGC 383
Query: 438 KERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+P F R N KFD +G +++R V
Sbjct: 384 DAQPYF---RIFNPVTQSEKFDAEG--KFIRRYV 412
>gi|383771224|ref|YP_005450289.1| DNA photolyase [Bradyrhizobium sp. S23321]
gi|381359347|dbj|BAL76177.1| DNA photolyase [Bradyrhizobium sp. S23321]
Length = 479
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 180/482 (37%), Gaps = 105/482 (21%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML-RGLRL 88
P++ W D R+ D+ AL HA A K PV + L D A + L + LR
Sbjct: 6 PIIVWFRDDLRLSDHPAL-HA---AAKTGAPVICLYVLDDAAGRAPGGAARWWLAQSLRA 61
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
L +I L L +G A IP R GA+ + + E+ + + + ++
Sbjct: 62 LGADIRRRGGSLI-LRKGPAAGVIPEVARAIGATAVYWN-----EVAQAPHQSVEKALEA 115
Query: 149 VTIH-EVDAHNVVP--VWVASEKL-EYSAKTLR------------GKINKLLP---EYLI 189
+D+H + P + VA + + LR G K LP E
Sbjct: 116 ALAKLGIDSH-IFPGDLLVAPSAIRNKEGRGLRVFTPFWRRVLALGDPPKPLPAPKELRA 174
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ +E W DW A LR+ E GE +A L+ FL
Sbjct: 175 GPKITSDALESWKLEPSKPDW----AGGLRES--------WEPGEASARTRLRD----FL 218
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLE 306
+Y DR+ P + + S LSP+L FG++S ++ AR A P ++ FL
Sbjct: 219 KHTAHSYAGDRDRPDR-KGTSSLSPHLRFGELSPRQVWHAARFAAAENPAIGPGVEKFLS 277
Query: 307 EL----IVRRELADN----FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
EL R L D+ Q N+D W+ + +L +++
Sbjct: 278 ELGWREFCRHLLHDHPDLATVNLQANFDGFP--WKPDKTALA--------------AWQR 321
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYE 413
+T P+ +A E+ + G MH +RM A +++W G + + + +
Sbjct: 322 GRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWRVGE------SWFWDTLVD 375
Query: 414 ID-GRDPNGY---VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
D G +P + GC G P F R N KFD DG YV+R
Sbjct: 376 ADAGSNPANWQWVAGC----------GADAAPYF---RVFNPQLQGEKFDPDG--TYVRR 420
Query: 470 IV 471
V
Sbjct: 421 WV 422
>gi|359440272|ref|ZP_09230193.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20429]
gi|358037809|dbj|GAA66442.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 144/370 (38%), Gaps = 45/370 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQTAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C ++ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHVIEAPSFSDCTRELIDFCKSNDVKHVIANTEYELNEVNRDKAILHECDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+S + T++E D + PV + K L +Y + L Q W T
Sbjct: 121 LSITFTLYEGDL--IAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ----WPLT 174
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ +D + +L+ C E L D F+ +L +Y R+ P
Sbjct: 175 SEPTKFDE--SGLLKSDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIP- 224
Query: 265 KPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTF--LEELIVR---RELADN 317
+ SGLSPYL G +S ++ ++ R L TF + EL+ R R L
Sbjct: 225 SVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAE 284
Query: 318 FCFYQ--PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
F N++ A W RKS + + + + +T PL +A+ +++
Sbjct: 285 FPKLSRGDNFNEKYNAVVW-RKSENEFTA-----------WCEGRTGYPLVDAAMLQLKQ 332
Query: 376 NGKMHGFMRM 385
G MH +RM
Sbjct: 333 TGWMHNRLRM 342
>gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum
JF-5]
Length = 471
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 93/226 (41%), Gaps = 22/226 (9%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D FL Y R+ P SGLSP+LH+G+I+ A A A TFL
Sbjct: 209 DAFLADGFGEYDRQRDLP-GIAGTSGLSPHLHWGEIAID-AVWRAAVAAPGRDAARQTFL 266
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
+ELI RE A ++ P+ + ++A ++ A+D +++ +T P+
Sbjct: 267 KELIW-REFAAYLLWHTPDLATRPMKAQFAAMPWRESAAD-------LAAWQRGRTGVPI 318
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+A ++ G MH +RM A +++ P +A +++ D
Sbjct: 319 VDAGMRQLWQTGWMHNRVRMIVASFLVKHLLLPWQA-------GERWFHDCLVDADAASN 371
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
S V G P F R N RKFD DG AYV+R V
Sbjct: 372 AASWQWVAGSGADAAPYF---RIFNPVLQGRKFDPDG--AYVRRFV 412
>gi|376292230|ref|YP_005163904.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC02]
gi|372109553|gb|AEX75613.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC02]
Length = 446
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 106/278 (38%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P +QPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 170 LAAPPKAKQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
rhizoxinica HKI 454]
Length = 522
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CA 287
+ GE A L D FL L Y + R+ P +A S LSPYL FG +SA++ A
Sbjct: 229 QCGEQAGQTQL----DAFLANALTRYASGRDVPAM-QATSRLSPYLRFGNLSARQVWHAA 283
Query: 288 LEARKARKLCPEA---------IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKS 338
L A + + C +A +D FL+EL RE + ++ + ++
Sbjct: 284 LSAARVGRHCGDARRTCTASSGVDKFLDELGW-REFSYYLLYHCAPLHQVNFKRQFDTMP 342
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
+ +D R ++ +T PL +A E+ + G MH +RM A +++
Sbjct: 343 WRADTADLRA-------WQHGRTGYPLVDAGMRELWHTGWMHNRVRMVTASFLVK 390
>gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786]
Length = 486
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 149/392 (38%), Gaps = 63/392 (16%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG----FMLRG 85
P V W D RV D+ AL+ A + PV A+ +FD+ G R LG + L G
Sbjct: 9 PAVVWFRDDLRVSDHPALVRAAESGR----PVIGAY-VFDECAGG--RPLGGAARWWLHG 61
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV 145
L G+ D I +F GA + + R + + N V
Sbjct: 62 SLRALDAALAALGSRLVLLSGDEADTITSFAAALGAGAVYWN----RRYALAQRAVDNTV 117
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYS-AKTLRGKINKLLPEYL-------IDYPMLEQP 197
++ +D V + AS E T G+ ++ Y + L P
Sbjct: 118 QTALEARGID----VETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAP 173
Query: 198 IEKWTG-------TRQSIDWDSIIAAVLRK--GAEVPEIGWCESGEDAAMEVLKGSKDGF 248
+ G ++ ++ D++ A R + E C GEDAA L+ F
Sbjct: 174 -RRLKGCELPPRLAQRQVELDALGLAPARPDWAGGLRETWTC--GEDAAHRRLRA----F 226
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALEARKARKLCPEAIDTFL 305
+ RL Y T R+ P + S LSP++ FG +S ++ A++A +DTF
Sbjct: 227 VDSRLGGYATGRDRP-GAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAATQADLDTFC 285
Query: 306 EELIVRRELADNFCFYQP-NYDSLKGAWEWARKSLKDHASDK---REHIYTKEQFEKAQT 361
EL R FC+ Q + L AR++L+ H D R+ + + T
Sbjct: 286 RELGWR-----EFCYGQLYRFPDL------ARRNLR-HNLDGMPWRDDPAALAAWRRGAT 333
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 393
P +A E+ G MH RM A +++
Sbjct: 334 GYPFVDAGMRELWATGWMHNRARMVCASFLVK 365
>gi|388599361|ref|ZP_10157757.1| deoxyribodipyrimidine photolyase [Vibrio campbellii DS40M4]
Length = 471
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 111/271 (40%), Gaps = 42/271 (15%)
Query: 219 RKGAEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPY 275
R A+VP ES + D+ ++++ ++ F +R Y R+ P S LSPY
Sbjct: 187 RYHADVPFTYPRESSDQWYDSTIDIVHHLRE-FARERSDAYQEKRDLP-SVDGTSQLSPY 244
Query: 276 LHFGQISAQRCA--LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
L G +S ++C L A + T+L E I+ RE + ++P KG
Sbjct: 245 LAIGALSPRQCIARLYAENPHTDLTDGKATWLSE-IIWREFYQHLLVFEPKLVKGKGFIP 303
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTAD---PLWNASQMEMVYNGKMHGFMRMYWAKK 390
W DK E Y + FE+ +T P+ +A+ ++ G MH +RM A
Sbjct: 304 W---------EDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASF 354
Query: 391 I-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGK 445
+ ++W G A +++ + D NG G WS G +P F
Sbjct: 355 LTKDLHIDWRWGE------AYFMSKLVDGDFAANNG--GWQWSAS----TGCDGQPYF-- 400
Query: 446 IRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
R N KFD DG A+V+ V K+
Sbjct: 401 -RIFNPISQGEKFDSDG--AFVRYWVPEIKQ 428
>gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 478
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 216 AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPY 275
+ L+ A+V W + E A++ L D F R+K Y DR+ P S LSPY
Sbjct: 187 SALQSIAQVDIDPW-QGSEQVALDAL----DEFCKDRIKAYKRDRDIP-SLDGTSTLSPY 240
Query: 276 LHFGQISAQRCALEARKARKLC--PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
L G +S ++C +++ PE I T+ ELI R+ + ++ P+ K
Sbjct: 241 LAIGSLSVRQCWQMSQQVSPSGSKPEGIATWQSELI-WRDFYRHLIYFFPHVCQYK---- 295
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A K DH K++ + + +T PL +A+ ++ G MH +RM
Sbjct: 296 -AFKQETDHLPWKKDQALF-QAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRM 345
>gi|384218167|ref|YP_005609333.1| DNA photolyase [Bradyrhizobium japonicum USDA 6]
gi|354957066|dbj|BAL09745.1| DNA photolyase [Bradyrhizobium japonicum USDA 6]
Length = 447
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 110/309 (35%), Gaps = 92/309 (29%)
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P+ +E WT DW A LR+ W A M + +D FL
Sbjct: 145 PLAGDALESWTLEPTKPDW----AGGLRQT-------WTPGEASARMRL----RD-FLRH 188
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEEL 308
+ Y DR+ P + S LSP+L FG++S ++ AR A P ++ FL EL
Sbjct: 189 TARVYVGDRDRPDR-EGTSSLSPHLRFGELSPRQVWHAARFAAAENPAIGPGVEKFLSEL 247
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK-------------EQ 355
R FC R L DH S E++ T
Sbjct: 248 GWR-----EFC----------------RHLLHDHPSLATENLQTNFDGFPWKGDKKALAA 286
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEID 415
+++ +T P+ +A E+ + G MH +RM +A +L ID
Sbjct: 287 WQRGRTGYPIVDAGLRELWHTGVMHNRVRM-----------------VVASFLVKHLLID 329
Query: 416 GRDPNGYVGCMWSI-----CGVHDQGWK--------ERPVFGKIRYMNYSGCKRKFDVDG 462
RD + W G + W+ P F R N + KFD DG
Sbjct: 330 WRDGESW---FWDTLVDADAGSNPANWQWVAGCGADAAPYF---RVFNPTLQGEKFDPDG 383
Query: 463 YIAYVKRIV 471
AYV+R V
Sbjct: 384 --AYVRRWV 390
>gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 484
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 35/167 (20%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--L 288
+ GE A E+L+ DG L+ Y +R+ P + S LSP+LHFG+I+ R A L
Sbjct: 215 QPGEAGAHEMLEIFIDGALS----GYRENRDRPDR-VGTSQLSPHLHFGEIAPWRIASTL 269
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFY---------QPNYDSLKGAWEWAR-KS 338
EA + + C E ID ++ +L R +F +Y N + ++WA+
Sbjct: 270 EAHRTARNCAE-IDGYIRQLGWR-----DFAYYLLHHFPDTTNQNLNPRFEGFDWAKVDP 323
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ HA +++ +T P+ +A ++ + G MH +RM
Sbjct: 324 VALHA------------WQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358
>gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
KD131]
gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
KD131]
Length = 471
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 35/237 (14%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL+ L Y +R+ P P S LS L +G+ISA+ +AR + FL+E
Sbjct: 216 FLSGPLDRYAAERDRPDAP-VTSRLSENLTYGEISARSLWHAGMRARAEGRAGAEKFLQE 274
Query: 308 LIVRRELADNFCFYQPNYD--SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
I RE + ++ P + +G W+ A R E++ + T +P
Sbjct: 275 -IAWREFGWHLLYHTPEIARRNWRGDWD---------AFPWRGDNPDAERWRRGMTGEPF 324
Query: 366 WNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPN 420
+A+ E+ G MH R+ Y K +L +W G + D ID +
Sbjct: 325 VDAAMRELFVTGTMHNRARLIAGSYLTKHLLTDWRVG-------QAWFEDCL-IDWDPAS 376
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
+G W V G P F R N + KFD + AY +R V +R
Sbjct: 377 NALGWQW----VAGSGPDASPYF---RIFNPATQAEKFDPES--AYRQRFVAEIARR 424
>gi|375292051|ref|YP_005126590.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae INCA 402]
gi|371581722|gb|AEX45388.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae INCA 402]
Length = 446
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 106/278 (38%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P +QPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 170 LAAPPKAKQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|424843384|ref|ZP_18268009.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
gi|395321582|gb|EJF54503.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
Length = 445
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 182/481 (37%), Gaps = 102/481 (21%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF----NLFDQFLGAKARQLGFMLRGLR 87
++W RD R+ DN AL A+ K PV F N+ + + ++ F+ + L+
Sbjct: 5 IFWHRRDLRLNDNAALYQAL----KAGGPVLSIFIFDQNILEDLNNRQDARVSFIHQELQ 60
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
LQ+ ++E L L+ P V + L+ D+ P+ ++ +D
Sbjct: 61 RLQKELQELGSDLLVLY------GRPKAV----WTQLLQDW-PINKVYTNRDDEPYAKKR 109
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ----PIEKWTG 203
+ E+ +P+ + + + A + K Y + P +Q K T
Sbjct: 110 DAAVAELLQKENIPLLTEKDHVIFEALEVEKKTAG---PYTVFTPYSKQWKAKLDSKKTA 166
Query: 204 TRQSIDWDSIIA-------AVLRKGAEVPEI---GWCESGEDAAMEVLKGSKDGFLTKRL 253
T +S S A L ++P + G+ S + +LK KR+
Sbjct: 167 TGESFYLQSYPNENYQQNYATLPGNFKIPSLESMGFAPSQLNFPSRLLK-------QKRI 219
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR-- 311
K Y R+ P S L + FG IS + +ARKARKL T+L ELI R
Sbjct: 220 KKYEETRDFPALEEGTSRLGLHFRFGTISIRE---KARKARKLNA----TYLNELIWRDF 272
Query: 312 -RELADNFC-----FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE---KAQTA 362
++ NF ++P YD + EW +E+FE + +T
Sbjct: 273 YAQILANFPKVVGQSFRPKYDLI----EWRN---------------NEEEFEAWCQGKTG 313
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGR 417
PL +A E+ G MH +RM A +++W G A + + D
Sbjct: 314 YPLVDAGMRELNATGYMHNRVRMLVASFLCKHLLIDWRWGE------AYFAEKLLDFDLA 367
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
NG G W+ D P F R + +KFD + + YVK+ V R
Sbjct: 368 SNNG--GWQWAAGSGTDAA----PYF---RIFSPESQLKKFDAE--LKYVKKWVKEYGSR 416
Query: 478 R 478
R
Sbjct: 417 R 417
>gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
Length = 501
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 89/403 (22%), Positives = 149/403 (36%), Gaps = 55/403 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W+ D R+ DN AL HA + + + V V + + +L F R L LL
Sbjct: 3 ALVWLRNDLRLHDNPAL-HAAAELRQGVIAVYVHCDAYVTRFPIAPSRLDFARRHLHLLT 61
Query: 91 RNIEE---TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS-PLREIRRCKDKICNRV- 145
+ Q+L E + R+ G S + PL E+ R D+ N++
Sbjct: 62 TELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNR--DQQVNQLL 119
Query: 146 -SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG------KINKLLPEYLIDYPMLEQPI 198
+ VT+ V+P + K ++ LLP ++ P + +
Sbjct: 120 RAQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLASLLPLRPVEAPAHQAAL 179
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + Q ID L +G E+ ++ + A V + F+ + L +Y T
Sbjct: 180 PCPSASAQDID-------HLFEGQELRDL---STPWPAGEAVARARLQRFVAQDLDHYQT 229
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK----LCPEAIDTFLEELIVRREL 314
R+ P SGLSPYL G +S R AL A +R + T++ ELI R
Sbjct: 230 QRDLPAV-AGTSGLSPYLAIGALSP-RQALAAVLSRTGGDWNANAGVSTWISELIWRE-- 285
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
FYQ + A R+ + + +T P+ +A+ ++
Sbjct: 286 -----FYQHLVVDYPQVCMHRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLN 340
Query: 375 YNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGR 417
G MH +RM +A++L +ID R
Sbjct: 341 ATGWMHNRLRML-----------------VAMFLTKNLQIDWR 366
>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
Length = 482
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 97/275 (35%), Gaps = 54/275 (19%)
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+E W DW S A + W GE+ A E L+ F+ RL Y
Sbjct: 187 LESWKLLSTQPDWASNFADL-----------WT-PGEEGAQEKLRT----FIEDRLDGYK 230
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+R+ P KP A S LSP+L G+IS R R K P A + I R+ + +
Sbjct: 231 ENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSKHLPAADIVHFRKEIAWRDFSYH 289
Query: 318 FCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
+ P N+D +EW +A + + T P+ +A +
Sbjct: 290 LLAHFPRLATANWDDRFDRFEWGSAEEDFNA------------WSRGMTGYPIVDAGMRQ 337
Query: 373 MVYNGKMHGFMRMYWAKKIL-----EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW 427
+ G MH +RM A ++ +W G + D +D N W
Sbjct: 338 LWRYGWMHNRVRMIAASFLIKDLMVDWRHG-------EAWFRDTL-VDADPANNAASWQW 389
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
V G P F R N KFD DG
Sbjct: 390 ----VAGSGADASPFF---RVFNPVLQGEKFDPDG 417
>gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
Length = 531
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 101/259 (38%), Gaps = 51/259 (19%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC- 286
W E A+ L D FLT L Y R+ P +P A S LSP+L FG +S ++
Sbjct: 251 AWPAPDEAGALARL----DTFLTTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVW 305
Query: 287 -ALE--ARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKS 338
A++ A + D FL EL RE + ++ P N+ + A W
Sbjct: 306 HAVQGAANAGGAVYAAHADKFLSELGW-REFSYTLLYHFPALATDNFRAQFDAMPW---- 360
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILE 393
R+ +++ +T PL +A E+ G MH +RM A +++
Sbjct: 361 --------RDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIKHLLID 412
Query: 394 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYS 452
W G EA + D +D N W + CG P F R N
Sbjct: 413 WRAG--EA-----WFRDTL-VDADPANNAASWQWVAGCGA-----DAAPYF---RIFNPV 456
Query: 453 GCKRKFDVDGYIAYVKRIV 471
+K D DG AYV+R V
Sbjct: 457 AQGQKCDPDG--AYVRRWV 473
>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
Length = 473
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 115/481 (23%), Positives = 186/481 (38%), Gaps = 109/481 (22%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-----------FDQFLGAKARQLG 80
V W +D R+ DN AL A+ N+ + V F+L D F A A +
Sbjct: 5 VMWFRKDLRLEDNTALTEALLSLQANDQLLCV-FHLNEKQFLPDAPSHDYFFSAVAHFIE 63
Query: 81 FMLR---GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
+ + + LL + E F LF + P + S L +F R R
Sbjct: 64 AVKKQNLTIHLLTGTLTEAFDQLFACY--------PEW------SQLYFNFDN-RGYGRK 108
Query: 138 KDKICNRVSD--SVTIHEVDAHNV-VPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+D + + VT+H + H++ P V E G K Y + L
Sbjct: 109 RDLYIKELVEKKGVTVHSFEEHHLHQPTEVTKED---------GTYYKKFTPYYKKWIQL 159
Query: 195 EQPIEKWTGTRQSIDWD---------------SIIAAVLR-KGAEVPEIGWCESGEDAAM 238
+P+ + +Q++D++ +++A VL + + I GED A
Sbjct: 160 PKPVYQ----KQALDFEKAAHFNDAPHFKAGTALLAEVLNNRKTDFSTI----VGEDYAH 211
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
+ L+ F+ KRL Y DR+ P + S LSP+L FGQIS ++ +
Sbjct: 212 KQLQA----FVQKRLAAYEKDRDLP-SIKGTSRLSPFLSFGQISIRKVWAACQGMPPSTG 266
Query: 299 EAIDTFLEELIVRRELADNFCFYQP---NYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+A TFL+EL R+ F P NY+ + + ++ K E + K
Sbjct: 267 KA--TFLKEL-AWRDFYHMIYFTHPEQKNYELI--------EKYRNMDWQKDEEAFNK-- 313
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLND 410
++ QT P+ +A+ ++ G MH +RM A +++W G E A +
Sbjct: 314 WQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRQG-EAYFARQL---- 368
Query: 411 KYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 470
ID + G W+ G P F R N +KFD +G Y+K+
Sbjct: 369 ---IDYDAASNIGGWQWAAST----GTDAVPYF---RIFNPITQGKKFDKEG--TYIKQF 416
Query: 471 V 471
V
Sbjct: 417 V 417
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 33/172 (19%)
Query: 227 IGWCE---SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA 283
GW E GE A L+ FL + +Y R+ P +P S LSPYL FG+IS
Sbjct: 196 TGWEELWSPGEAGASGALRT----FLDSHVDSYGNGRDFPAQPNT-SRLSPYLKFGEISP 250
Query: 284 QRCALEARKARKLCPE---AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLK 340
++ A+ ++ P+ +ID FL E I RE ++ P ++
Sbjct: 251 RQIWWTAQNTKQSNPDEGSSIDKFLSE-IGWREFCNHLVAQFP--------------AMP 295
Query: 341 DHASDKR-------EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D A + + H +++ T P+ +A E+ G MH +RM
Sbjct: 296 DKAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRM 347
>gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054]
gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424]
gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
AU 1054]
gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
HI2424]
Length = 519
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 101/259 (38%), Gaps = 51/259 (19%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC- 286
W E A+ L D FLT L Y R+ P +P A S LSP+L FG +S ++
Sbjct: 239 AWPAPDEAGALARL----DTFLTTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVW 293
Query: 287 -ALE--ARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKS 338
A++ A + D FL EL RE + ++ P N+ + A W
Sbjct: 294 HAVQGAANAGGAVYAAHADKFLSELGW-REFSYTLLYHFPALATDNFRAQFDAMPW---- 348
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILE 393
R+ +++ +T PL +A E+ G MH +RM A +++
Sbjct: 349 --------RDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIKHLLID 400
Query: 394 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYS 452
W G EA + D +D N W + CG P F R N
Sbjct: 401 WRAG--EA-----WFRDTL-VDADPANNAASWQWVAGCGA-----DAAPYF---RIFNPV 444
Query: 453 GCKRKFDVDGYIAYVKRIV 471
+K D DG AYV+R V
Sbjct: 445 AQGQKCDPDG--AYVRRWV 461
>gi|411001340|ref|ZP_11377669.1| deoxyribodipyrimidine photo-lyase [Streptomyces globisporus C-1027]
Length = 451
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 53/255 (20%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G GE A +++ +L + +Y D ++ L A S LSP+LHFG +SA A
Sbjct: 191 GLARGGEKAGRKLVAS----WLHGPMADY-EDGHDDLAGDATSRLSPHLHFGTVSAAELA 245
Query: 288 LEARKARKLCPEAI------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
AR+ EA F +++ R A ++ Y+P +D +
Sbjct: 246 NRAREKGGPGGEAFVRQLAWRDFHHQVLAARHDA-SWSDYRPRHDRWR------------ 292
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTT 396
SD E + ++ T PL +A+ ++ + G MH RM A + ++W
Sbjct: 293 --SDADE----IDAWKTGLTGFPLVDAAMRQLAHEGWMHNRGRMLAASFLTKTLYVDWRV 346
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKR 456
G L + +DG N + W V G RP R +N +
Sbjct: 347 GARHFLDLL--------VDGDMANNQLNWQW----VAGTGTDTRP----NRILNPVVQGK 390
Query: 457 KFDVDGYIAYVKRIV 471
+FD DG AYV+R V
Sbjct: 391 RFDPDG--AYVRRWV 403
>gi|386314555|ref|YP_006010720.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
Length = 493
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 118/481 (24%), Positives = 180/481 (37%), Gaps = 96/481 (19%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP---VAVAFNLFDQFLGAK 75
LK+ G + W +D R+ DN AL A D A + +A +
Sbjct: 4 LKEQMATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVA 63
Query: 76 ARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR 135
QL F+ R + LL + + I F L Q E +IP F+ + +T R
Sbjct: 64 PIQLDFIERHINLLAKGLG-CLGIQFELIQLERFADIPQFMLDYCQQHNIT-----RVFA 117
Query: 136 RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT---LRGKINKLLPEYLIDYP 192
+ +I RV D I DA VP+ + E + T L G++ ++ +
Sbjct: 118 GSEPEINERVRDQACI---DAG--VPLLLTDEHCLLAPGTVLNLSGEMYRVFTPF----- 167
Query: 193 MLEQPIEKW--TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG--- 247
KW R +I + A + G +PE + G+ +G
Sbjct: 168 -----SRKWREIAARHAILPLGVPAPL---GPVLPEPKALNLAVNKVSSEQWGAGEGQAK 219
Query: 248 -----FLTKRLKNYPTDRNNPLKPRALSG---LSPYLHFGQISAQRC--ALEARKARKLC 297
F+ +++++Y DR+ P AL G +SPYL G +SA++C AL R
Sbjct: 220 RLLCDFVQQKVQDYKQDRDFP----ALDGTSCISPYLAIGVLSARQCVAALLQR-----F 270
Query: 298 PEAI-------DTFLEELIVR---RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
PE I T+L EL+ R R L F N++ + A R
Sbjct: 271 PEVIVDDTSLGRTWLNELVWREFYRHLLVAFPDLSKNHNFNRQA----------DQVQWR 320
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEAL 402
+I + + + +T P+ +A+ ++ G MH +RM A +++W G
Sbjct: 321 NNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGER--- 377
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVD 461
Y K IDG G WS CG Q P F R N KFD D
Sbjct: 378 ----YFRQKL-IDGDLAANNGGWQWSAGCGCDAQ-----PYF---RIFNPMSQSEKFDPD 424
Query: 462 G 462
G
Sbjct: 425 G 425
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 105/270 (38%), Gaps = 59/270 (21%)
Query: 224 VPEIGWCE-------SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P I W GE A + LK F+ L Y +R+ P+K A S LSP+L
Sbjct: 184 LPTINWAARFSEYWIPGEGGAQQKLKE----FIEHHLNGYKNNRDFPIK-NATSRLSPHL 238
Query: 277 HFGQISAQRCALEARKARKLCPE----AIDTFLEELIVRRELADNFCFYQP-----NYDS 327
HFG+IS L A + KL P + + FL EL RE + ++ P N+ +
Sbjct: 239 HFGEISPW-TILRAIELAKLNPNCDLASAEHFLSEL-GWREFSVYLLYHFPKLPSENFRN 296
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 387
A+ W H +K + + T P+ +A E+ G MH +RM
Sbjct: 297 EFDAFPW-------HNDEK-----LLSYWRRGLTGYPIIDAGMRELWATGYMHNRVRMIA 344
Query: 388 AK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERP 441
A +++W G + L +D N W + CG P
Sbjct: 345 ASFLTKGLLIDWRLGADWFLDTL--------VDADLANNSASWQWVAGCGA-----DAAP 391
Query: 442 VFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
F R N +KFD DG +Y++ V
Sbjct: 392 YF---RIFNPVLQSQKFDADG--SYIRHWV 416
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 153/386 (39%), Gaps = 35/386 (9%)
Query: 20 KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN-----VPVAVAFNLFDQFLGA 74
K G +D +R +V+W + R+ DN AL H AN P+ + ++
Sbjct: 20 KAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQV 79
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLR 132
A + F+ + L L + + L F+ +G+ + P + +L TD P
Sbjct: 80 GANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYS 138
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLRG--------KINKL 183
R + + ++ V + +H + P V ++ L + T + K+ K+
Sbjct: 139 VTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKV 197
Query: 184 L--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
L PE L + P P + + S +D L K E GE A+ +
Sbjct: 198 LGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM 254
Query: 242 KGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
+ S KD R + P N L+P + + LSPYL FG +SA+ + ++ K P+
Sbjct: 255 EESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCLSARLFNQKLKEIIKRQPKH 312
Query: 301 IDTFLEEL--IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
+ + ++ RE +PN+D + G + ++H +H+ E +
Sbjct: 313 SQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHP----DHL---EAWTH 365
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMR 384
+T P +A ++ G +H R
Sbjct: 366 GRTGYPFIDAIMRQLRQEGWIHNLAR 391
>gi|398800371|ref|ZP_10559643.1| deoxyribodipyrimidine photolyase [Pantoea sp. GM01]
gi|398095538|gb|EJL85874.1| deoxyribodipyrimidine photolyase [Pantoea sp. GM01]
Length = 475
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 164/409 (40%), Gaps = 90/409 (22%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ D R+ DN AL A +N N + + +A Q +Q F+ + LRLLQ
Sbjct: 5 LVWLRNDLRINDNMALAAACRDSNANVMALFIATPQQWQQHHMAPKQAAFIQQNLRLLQA 64
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVREC---GASL-LVTDFSPLREIRRC----KDKICN 143
++ AE IP +C AS+ +++F + + + +I
Sbjct: 65 SL--------------AERGIPLHYHQCNDFAASIDFLSEFCHQQHVDALYYNYQYEINE 110
Query: 144 RVSDSVTIHEVDAHNVV-------------PVWVASEKL-----EYSAKTLRGKINKLLP 185
R D+ +DA V+ V S + +S +R ++++ LP
Sbjct: 111 RERDAQAEKRLDAQGVICQGFDDSLLLPPGSVQTGSNTMFKVFTPFSKAFVR-RLHQGLP 169
Query: 186 E-YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
E Y PI + I A +V E W +GE+AA++ L+
Sbjct: 170 ECYHAPKARPNAPIRI----------EQHIPAFDYPCEDVDE-SWFPAGEEAALKQLRH- 217
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-- 302
F + ++ YP R+ P S LS YL G +S ++C + K P+A++
Sbjct: 218 ---FAKQAVQYYPDQRDLPAI-DGTSRLSAYLAIGVLSPRQCL---HRVLKEHPDALNEG 270
Query: 303 ---TFLEELIVR---RELADNF---CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
T+L ELI R R L F C +QP D W R D +++ +
Sbjct: 271 KAFTWLNELIWREFYRHLMVAFPALCKHQPFVD-------WTRNV------DWQKNDHHL 317
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTG 397
+++ +T P+ +A+ ++ G MH +RM A +++W G
Sbjct: 318 AAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVKDLLIDWREG 366
>gi|338731144|ref|YP_004660536.1| DNA photolyase FAD-binding protein [Thermotoga thermarum DSM 5069]
gi|335365495|gb|AEH51440.1| DNA photolyase FAD-binding protein [Thermotoga thermarum DSM 5069]
Length = 420
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 86/379 (22%), Positives = 144/379 (37%), Gaps = 69/379 (18%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD--QFLG-AKARQLGFMLRGLRL 88
++W+ RD R+ DN LIHA + N F LFD +F G + +++ F+ R L
Sbjct: 6 IWWIRRDMRIEDNRVLIHAAEDGN-----AVFPFYLFDPSEFTGEGQEKKVNFIFRQLVN 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
L R + + F + G+A+D L T F K C + S
Sbjct: 61 LNRELAK-FGTAITICYGKAKDVF---------GWLKTQFP------EAKVFTCVELGHS 104
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS- 207
+A +PV SE S +R K K+L + + +EK Q
Sbjct: 105 ACQAVKEAEKFLPVVEVSEGYLLSFDKIRSKKGKILTTFFHFKNAAYKELEKLEAIYQEK 164
Query: 208 --IDWDSI-IAAVLRKGAE-------------VPEIGWCESGEDAAMEVLKGSKDGFLT- 250
++W S+ + V + G E EI G + E L + L
Sbjct: 165 PKVEWLSVSMPCVYKIGEEKAEKLDFSLSSLGFEEIELVHEGAVKSAEELLERFEKILPE 224
Query: 251 -KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALEARKARKLCPEAIDTFLE 306
++L+++P L LS +L +G IS + R + + K F++
Sbjct: 225 YEKLRDFPAVNGTSL-------LSAHLRYGTISIRKVFRWVMNRPNSAK--------FID 269
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
EL+ RE ++ P + ++ R+ LK A D + + AQ P+
Sbjct: 270 ELLW-REFFSYLFYHFPESEFQDLRKDYNRRWLKPSAEDWKRVL-------NAQIGIPII 321
Query: 367 NASQMEMVYNGKMHGFMRM 385
+A ++ G +H +RM
Sbjct: 322 DAGLKQLYLEGFVHNRVRM 340
>gi|345010228|ref|YP_004812582.1| FAD-binding DNA photolyase [Streptomyces violaceusniger Tu 4113]
gi|344036577|gb|AEM82302.1| FAD-binding DNA photolyase [Streptomyces violaceusniger Tu 4113]
Length = 454
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 99/263 (37%), Gaps = 41/263 (15%)
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
+AAV P G E GE A ++ L +Y DR + L A S LS
Sbjct: 182 VAAVTSLAPGSPSPGLPEGGETAGRRRVRSWW----RSGLADY-ADRQDDLAGDATSRLS 236
Query: 274 PYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
PYLHFG +S ARKA D F+ +L R +F ++ L +
Sbjct: 237 PYLHFGCLSPVELVHRARKA---GGAGADAFVRQLAWR-----DF-----HHQVLAARPD 283
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA---KK 390
A + R ++ +T PL +A ++ + G MH R+ A K
Sbjct: 284 AAHADYRPRGDRWRHDEAEIAAWKAGRTGYPLVDAGMRQLRHEGWMHNRARLLVAGFLTK 343
Query: 391 IL--EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRY 448
L +W G L + +DG N + W+ G RP R
Sbjct: 344 TLYQDWRIGARHFLDLL--------VDGDLANNQLNWQWAAG----TGTDTRP----NRV 387
Query: 449 MNYSGCKRKFDVDGYIAYVKRIV 471
+N R+FD DG AYV+R V
Sbjct: 388 LNPLTQARRFDPDG--AYVRRWV 408
>gi|352080494|ref|ZP_08951433.1| Deoxyribodipyrimidine photo-lyase [Rhodanobacter sp. 2APBS1]
gi|351683775|gb|EHA66851.1| Deoxyribodipyrimidine photo-lyase [Rhodanobacter sp. 2APBS1]
Length = 470
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 52/255 (20%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A E+L + F + +Y R+ P + S LSP+LHFG+IS ++ E
Sbjct: 201 QPGEAGARELL----EIFGDDAIGDYAHARDLPAR-HGTSRLSPHLHFGEISPRQIQFEL 255
Query: 291 -RKAR----KLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLK 340
R+A K P+ ++ +L EL RE A + ++ P N++ + WA
Sbjct: 256 DRRAHATDAKRRPD-LEPYLRELGW-REFAHHLLYHFPHTPTDNFNPRFDDFPWAP---A 310
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE-----WT 395
DHA E++++ +T PL +A E+ G MH +RM A + + W
Sbjct: 311 DHA--------LLERWQRGRTGIPLVDAGMRELWRTGWMHNRVRMIVASFLTKNLRQHWQ 362
Query: 396 TGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGC 454
G A + D +D N +G W + CG P F R N
Sbjct: 363 HG-------ARWFWDTL-VDADLANNTLGWQWVAGCGA-----DAAPYF---RVFNPVTQ 406
Query: 455 KRKFDVDGYIAYVKR 469
+KFD DG Y++R
Sbjct: 407 AKKFDPDGI--YLRR 419
>gi|336126045|ref|YP_004578001.1| deoxyribodipyrimidine photolyase [Vibrio anguillarum 775]
gi|335343762|gb|AEH35044.1| Deoxyribodipyrimidine photolyase [Vibrio anguillarum 775]
Length = 470
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
+ ++ F +++NY R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FDAIRAKLRQFCRDKVQNYHQQRDFPAL-DSTSALSPYLAIGALSARQCMARLYAESQHI 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
E T+L E I+ RE + ++P+ K W + H S E+ E+
Sbjct: 265 GLSEGAQTWLSE-IIWREFYQHLIGFRPDLCKGKDFAPWGK-----HVS-WWENSTAFER 317
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+++ QT P+ +A+ ++ G MH +RM
Sbjct: 318 WQQGQTGFPIVDAAMRQLNKTGWMHNRLRM 347
>gi|385330456|ref|YP_005884407.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
gi|311693606|gb|ADP96479.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
Length = 467
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 34/238 (14%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GEDAA + L + FL KR Y R+ P S +SPYL G +S ++C + R
Sbjct: 202 TGEDAAHDQL----ERFLEKRGGAYKEKRDFPAI-DGTSQISPYLANGVLSGRQCLIAGR 256
Query: 292 KARKLC--PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
+A+ E + T++ E I R+ N ++ P S+ A++ ++L+ + R
Sbjct: 257 QAQGAGGNQEGLGTWITE-IAWRDFYINILYHFPRV-SMHRAFKPETETLEWNNPGDR-- 312
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR----MYWAKKI-LEWTTGPEEALAI 404
E ++ T P+ +A+ ++ G MH +R MY K + ++W G
Sbjct: 313 ---FEAWKTGNTGVPIVDAAMRQLNQTGWMHNRLRMITAMYLTKNLFIDWRLG------- 362
Query: 405 AIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
Y K IDG + G WS D P F R N +FD DG
Sbjct: 363 EAYFMSKL-IDGFLASNNGGWQWSASTGTDAA----PYF---RVFNPVTQSERFDPDG 412
>gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
gi|119863360|gb|ABM02837.1| deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii
37]
Length = 453
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 120/282 (42%), Gaps = 59/282 (20%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE AA+ L+ FL + +++Y +R+ P SGLS YL FG ISA+RC E
Sbjct: 196 AGETAALRRLRH----FLLQDIEDYHHNRDIP-SLDGTSGLSAYLKFGVISAKRCVYEVL 250
Query: 292 KARKLCPEAID-------TFLEELIVRRELADNFCFYQP------NYDSLKGAWEWARKS 338
A P+A+D +++ E IV RE + + P N++ L W+
Sbjct: 251 AA---FPDALDAQDSSVFSWINE-IVWREFYRHLMIFNPQLCKGKNFNKLADNITWS--- 303
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILE 393
++ D + + + +T L +A+ ++ G MH +RM A +++
Sbjct: 304 --NNPDDFKA-------WCEGRTGYGLVDAAMRQLNQTGWMHNRLRMVTASFLTKHLLID 354
Query: 394 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSG 453
W G EA Y + + IDG + G W+ G +P F R N
Sbjct: 355 WRWG--EA-----YFRE-HLIDGDLASNNGGWQWAAS----TGCDAQPYF---RIFNPII 399
Query: 454 CKRKFDVDGYI--AYVKRIVGGTKKR---RADSLVSGKEKEL 490
+KFD G YVK + G K+ +++V K+ L
Sbjct: 400 QSQKFDPKGLFIRKYVKELNGFDNKKIHFPVNAIVEHKQARL 441
>gi|386838273|ref|YP_006243331.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374098574|gb|AEY87458.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451791565|gb|AGF61614.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 458
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 103/249 (41%), Gaps = 38/249 (15%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G E GE A + L +L + Y DR++ L A S LSP+LHFG +S
Sbjct: 194 GLAEGGEAAGRKRLAA----WLRSGMALY-ADRHDDLAGDATSRLSPHLHFGTVSPVELV 248
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
AR+A EA F+ ++ R F++ + GA ++ D +R
Sbjct: 249 HRARRADGPGAEA---FVRQVAWR-------DFHRQVLAARPGAAVADYRTRHDRWRSER 298
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKI-LEWTTGPEEAL 402
E + + +T P+ +A+ ++ + G MH R+ + AK + ++W G L
Sbjct: 299 TAREDIEAWREGRTGWPVIDAAMRQLRHEGWMHNRARLLTASFLAKTLYVDWRVGARHFL 358
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
++ +DG N + W V G RP R +N R++D DG
Sbjct: 359 --------EWLVDGDLANNQLNWQW----VAGTGTDTRP----NRVLNPLIQARRYDPDG 402
Query: 463 YIAYVKRIV 471
YV+R V
Sbjct: 403 --VYVRRWV 409
>gi|393725140|ref|ZP_10345067.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26605]
Length = 457
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 27/159 (16%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GEDAA + L +D + Y RN P S LSP+LHFG++SA +
Sbjct: 201 GEDAAHKRLNAFRD-----QAARYDETRNLP-SIDGSSRLSPHLHFGELSAAQVWHAVTD 254
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY------DSLKGAWEWARKSLKDHASDK 346
A ++D FL E I R+ A N P+Y D+L G EW ++ K+ +D
Sbjct: 255 AGG----SVDVFLSE-IGWRDYAQNVILQYPDYGTRNGRDALGGL-EW--RTGKEANADL 306
Query: 347 REHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ +++ +T P+ +A ++ G MH +RM
Sbjct: 307 K-------AWQQGRTGYPIVDAGMRQLWTTGWMHNRVRM 338
>gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
17025]
gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
ATCC 17025]
Length = 470
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 82/207 (39%), Gaps = 30/207 (14%)
Query: 270 SGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLK 329
S LS L +G+ISA+ +AR + FL+EL V RE A + ++ P S
Sbjct: 236 SRLSENLTYGEISARTIWHAGLRARAEGRAGAEKFLQEL-VWREFAWHLLYHTPEIASRN 294
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM---- 385
EW A R E++ + T +P +A+ E+ G MH R+
Sbjct: 295 WRGEW-------DAFPWRADNAEAERWRRGMTGEPFVDAAMRELFLTGTMHNRARLIAGS 347
Query: 386 YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
Y K +L +W G + D ID + +G W V G P F
Sbjct: 348 YLTKHLLTDWRVG-------QAWFEDCL-IDWDPASNALGWQW----VAGSGPDASPYF- 394
Query: 445 KIRYMNYSGCKRKFDVDGYIAYVKRIV 471
R N + KFD DG AY +R +
Sbjct: 395 --RVFNPATQAEKFDPDG--AYRRRFI 417
>gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
aromaticivorans DSM 12444]
gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
aromaticivorans DSM 12444]
Length = 454
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE+ A E L+ D R+ Y RN P S LSP+LHFG+IS
Sbjct: 201 GENGAEERLQDFAD-----RVARYGETRNLP-SIEGTSRLSPHLHFGEISPATIWHRVVN 254
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
A ++D FL EL R+ A N P+Y S + R +D R
Sbjct: 255 AGG----SVDVFLGELGW-RDYAQNVIVQFPDYGSRNAREAYDRLEWRDDPEALR----- 304
Query: 353 KEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+++ +T P+ +A E+ + G MH +RM
Sbjct: 305 --AWQQGRTGYPIVDAGMRELWHTGWMHNRVRM 335
>gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
Length = 471
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 92/226 (40%), Gaps = 22/226 (9%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D FL Y R+ P SGLSP+LH+G+I+ A A A TFL
Sbjct: 209 DAFLADGFGEYDRQRDLP-GVAGTSGLSPHLHWGEIAID-AVWRAAVAAPGRDAARQTFL 266
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
+ELI RE A ++ P+ + ++A ++ A+D ++ +T P+
Sbjct: 267 KELIW-REFAAYLLWHTPDLATRPMKAQFAAMPWRESAAD-------LAAWQHGRTGVPI 318
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+A ++ G MH +RM A +++ P +A +++ D
Sbjct: 319 VDAGMRQLWQTGWMHNRVRMIVASFLVKHLLLPWQA-------GERWFHDCLVDADAASN 371
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
S V G P F R N RKFD DG AYV+R V
Sbjct: 372 AASWQWVAGSGADAAPYF---RIFNPVLQGRKFDPDG--AYVRRFV 412
>gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC
13032]
gi|385142786|emb|CCH23825.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum K051]
Length = 482
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 101/420 (24%), Positives = 151/420 (35%), Gaps = 94/420 (22%)
Query: 14 GRIRVLKQGSL-DKKRGPVVYWMFRDQRVRDNWALIHAVDQA---------NKNNVPVAV 63
R+ +L ++ D +R P + W D R+ DN AL A D N A
Sbjct: 5 ARVFILNSLAMNDPQRSPTLLWFRDDLRLSDNAALKWAADHGPVIGLFIDETINRSIGAA 64
Query: 64 AFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123
A +Q L A A+ L F G+ LL+R G + +P V E
Sbjct: 65 ARWWREQSLNALAQDLSFY--GVPLLRRT-------------GNPLEILPKIVSEMEVKA 109
Query: 124 LVTD---FSPLREIRRCKDKICNRVSDSVTIH---------EVDAHNVVP--VWVASEKL 169
+ + PL E+ K V H EV P V+ K
Sbjct: 110 VTWNRRYHQPLCEVDATLKKNLRDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKA 169
Query: 170 EYSAKTLRG----KINKLLPEYL-----IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRK 220
+ + K N +P +L ++ P+LE W+ T
Sbjct: 170 AWEVARVHAYETVKNNVPVPSHLTGPEDVELPILEMEQPFWSTTL--------------- 214
Query: 221 GAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQ 280
+ C GE A E L FL + L++YP R++ L A S LS +L FG+
Sbjct: 215 ------VKECAPGEKNASEKLFD----FL-EHLQDYPQARDS-LARSATSKLSAHLRFGE 262
Query: 281 ISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-------KGAWE 333
IS R E + E + FL+EL+ R + A + + P+ D+ + W
Sbjct: 263 ISIHRVWAETAA---IDSEGTELFLKELLWR-DFAWHRLYALPHMDTQNVRMQFNRFGWS 318
Query: 334 WARKSLKDHASDKREHIYTK-EQFEK-------AQTADPLWNASQMEMVYNGKMHGFMRM 385
W + I TK +QF + +T PL +A E+ G MH +RM
Sbjct: 319 WDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELWATGSMHNRVRM 378
>gi|337755263|ref|YP_004647774.1| deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
gi|336446868|gb|AEI36174.1| Deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
Length = 468
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GE A+ ++L + FL ++K Y T R+ + + S LSPYLHF
Sbjct: 184 PKLSWQNIIDQWQIGEVASHQIL----EEFLDSKVKEYKTARDF-MSTDSTSKLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ---------PNYDSLK 329
G+IS + A ++ + F++EL+ R +F +YQ N D
Sbjct: 239 GEISPNQI-FNAVQSLDYIGNNEEHFIKELVWR-----DFSYYQIYYYPELHNKNIDQKF 292
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++EW D + K ++ T P+ +A E+ G MH +RM
Sbjct: 293 DSFEW----------DNDPTLLKK--WQTGHTGIPIVDAGMRELWQTGYMHNRVRM 336
>gi|427407608|ref|ZP_18897810.1| hypothetical protein HMPREF9718_00284 [Sphingobium yanoikuyae ATCC
51230]
gi|425714112|gb|EKU77123.1| hypothetical protein HMPREF9718_00284 [Sphingobium yanoikuyae ATCC
51230]
Length = 458
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 29/189 (15%)
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+E WT + DW S A W GE+ A L D FL + + +Y
Sbjct: 178 LEDWTLLPRDPDWASGFPA-----------DWS-PGEEGAKRYL----DSFLGE-VGDYA 220
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
R+ P + S LSP+LHFG+IS + +A P +L+ELI R+ A N
Sbjct: 221 VARDLPSQ-EGTSRLSPHLHFGEISPAKVWHRVAQA----PGDATVYLKELIW-RDYAHN 274
Query: 318 FCFYQPNYDSLKGAWEWARKSLKD-HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
P Y S E A+ + H D RE +++ QT P+ +A ++
Sbjct: 275 QVSALPTYGS-----ENAQPAFDAMHWRDLREARGDWTAWKRGQTGYPIVDAGMRQLWQT 329
Query: 377 GKMHGFMRM 385
G MH +RM
Sbjct: 330 GWMHNRVRM 338
>gi|417822869|ref|ZP_12469467.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|419836871|ref|ZP_14360311.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|421343000|ref|ZP_15793404.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|421355393|ref|ZP_15805724.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|423734313|ref|ZP_17707526.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|424008597|ref|ZP_17751545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
gi|340048999|gb|EGR09915.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|395941567|gb|EJH52244.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|395950063|gb|EJH60682.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|408631158|gb|EKL03717.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|408857421|gb|EKL97109.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|408865383|gb|EKM04786.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
Length = 469
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P++ S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPVR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|359407531|ref|ZP_09200008.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677570|gb|EHI49914.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 487
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 224 VPEIGWCESGEDAAMEVLKGSKDG---FLTKR----LKNYPTDRNNPLKPRALSGLSPYL 276
+P + W E G++D F+T L Y RN P KP A S LSPYL
Sbjct: 197 IPPLPWAEQVTSGWTISEAGAQDALSAFVTPDPQTGLGCYADGRNLPAKP-ATSRLSPYL 255
Query: 277 HFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWAR 336
FGQIS + A + +D F EL RE + + P + ++A
Sbjct: 256 KFGQISPHQAWYAAEGSFHDSDVNLDMFRSEL-GWREFSYHLLKSNPELKTTPLQAKFAN 314
Query: 337 KSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D++ EH+ ++ QT P+ +A E+ G MH +RM
Sbjct: 315 FDWLDNS----EHL---RAWQIGQTGYPIVDAGMRELYQTGYMHNRVRM 356
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 153/386 (39%), Gaps = 35/386 (9%)
Query: 20 KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN-----VPVAVAFNLFDQFLGA 74
K G +D +R +V+W + R+ DN AL H AN P+ + ++
Sbjct: 20 KAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQV 79
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLR 132
A + F+ + L L + + L F+ +G+ + P + +L TD P
Sbjct: 80 GANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYS 138
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLRG--------KINKL 183
R + + ++ V + +H + P V ++ L + T + K+ K+
Sbjct: 139 VTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKV 197
Query: 184 L--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
L PE L + P P + + S +D L K E GE A+ +
Sbjct: 198 LGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM 254
Query: 242 KGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
+ S KD R + P N L+P + + LSPYL FG +SA+ + ++ K P+
Sbjct: 255 EESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCLSARLFNQKLKEIIKRQPKH 312
Query: 301 IDTFLEEL--IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
+ + ++ RE +PN+D + G + ++H +H+ E +
Sbjct: 313 SQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHP----DHL---EAWTH 365
Query: 359 AQTADPLWNASQMEMVYNGKMHGFMR 384
+T P +A ++ G +H R
Sbjct: 366 GRTGYPFIDAIMRQLRQEGWIHHLAR 391
>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
Length = 476
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 177/455 (38%), Gaps = 59/455 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--IGSASK--WWLHHAIIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI-HEVD 155
L + +G E+ I + + + G + + + + + K+ + D I E +
Sbjct: 65 GSTLI-IRKGSTEEEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGMICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ WV +K K N + ++ +PI K QSI + +
Sbjct: 124 SHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ------VIHKPISK----VQSIKGGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
+ L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 174 SSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFP-NQNAHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + C + +++F+ +LI R F +Y Y
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWRE-----FSYYML-Y 286
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A++ KS + + + + ++K +T P +A E+ G MH RM
Sbjct: 287 HYPFTAYKPLNKSFEHFPWNNEKELL--RVWQKGETGYPFIDAGMRELWQTGFMHNRTRM 344
Query: 386 YWAKKILE-----WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
A +++ W G A + D +D N +G W V G
Sbjct: 345 AVASFLIKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
P F R N KFD +G Y+++ V K
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRKWVPELK 422
>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
Length = 484
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 25/177 (14%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALE 289
GEDAA + L FL L Y DR+ P S LSP+L FG+ISA++ L
Sbjct: 213 GEDAARDCLTR----FLENTLSTYTEDRDVP-GIDGTSRLSPHLRFGEISARQAWYATLA 267
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDK--R 347
+ FL ELI R +F NY L + +R ++D S R
Sbjct: 268 FMDEHHSARAGGEKFLSELIWR-----DF-----NYHQLYHRRDISRHDMRDTLSGIAWR 317
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPE 399
+ E + + QT P+ +A ++ G MH +RM A +++W G E
Sbjct: 318 DDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLTKNLLIDWRKGEE 374
>gi|420263503|ref|ZP_14766140.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
gi|394769460|gb|EJF49316.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
Length = 473
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 155/380 (40%), Gaps = 67/380 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD-QFLGAKARQLGFMLRGLRLLQ 90
V W +D R+ DN AL A+ N+ + V F+L + QFL F ++
Sbjct: 5 VMWFRKDLRLEDNTALTEALLSLQANDQLLCV-FHLNEKQFLPDAPSHDYFFSAVAHFIE 63
Query: 91 RNIEETFQILFFLFQG---EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
++ I L G EA D + F S L +F R R +D + +
Sbjct: 64 AAKKQNLTI--HLLTGTLTEAFDQL--FAHYPEWSQLYFNFDN-RGFGRKRDLYIKELVE 118
Query: 148 --SVTIHEVDAHNV-VPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
VT+H + H++ P V E G K Y + L +P+ +
Sbjct: 119 KKGVTVHSFEEHHLHQPTEVTKED---------GTYYKKFTPYYKKWIQLPKPVYQ---- 165
Query: 205 RQSIDWD---------------SIIAAVLR-KGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
+Q++D++ +++A +L+ + + I GED A + L+ F
Sbjct: 166 KQALDFEKAAHFNDAPHFKAGTALLAKLLKNRKTDFSTI----VGEDYAHKQLQA----F 217
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
+ KRL Y DR+ P + S LSP+L FGQ+S ++ + +A TFL+EL
Sbjct: 218 VQKRLAAYEKDRDLP-SIKGTSRLSPFLSFGQLSIRKVWAACQGMPPSTGKA--TFLKEL 274
Query: 309 IVRRELADNFCFYQP---NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
R+ F P NY+ + + ++ K E + K ++ QT P+
Sbjct: 275 -AWRDFYHMIYFTHPEQKNYELI--------EKYRNMDWQKDEEAFNK--WQAGQTGYPI 323
Query: 366 WNASQMEMVYNGKMHGFMRM 385
+A+ ++ G MH +RM
Sbjct: 324 IDAAMRQLNQTGWMHNRLRM 343
>gi|407069234|ref|ZP_11100072.1| deoxyribodipyrimidine photolyase [Vibrio cyclitrophicus ZF14]
Length = 476
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 147/373 (39%), Gaps = 39/373 (10%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ RD R+ DN AL+ AV+ N V ++ L + F+ R L+ L+
Sbjct: 4 ILWIRRDLRIHDNPALVAAVENGVTNAVFISTPQQWQQHDLAPI--KADFIYRHLKQLEL 61
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVR---ECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ E L L + +D R E A + T+ P + + +DK ++
Sbjct: 62 QLAEFGISLLHLKATDFDDQAAQLTRLYNELDAKCVYTNSEPEVD-EQLRDK--RLIASG 118
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID-YPMLEQPIEKWTGTRQS 207
+ + D ++P+ K K N L E + PI + T Q+
Sbjct: 119 IKLKMTDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGIQCSPAPIIQAEPT-QT 177
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDA-----AMEVLKGSKDGFLTKRLKNYPTDRNN 262
++ ++ L E + D+ + +VL FL ++ +Y R+
Sbjct: 178 ERLNTQLSGDLTPHKLSDEYDFDFPRVDSDRWPLSQDVLNSVIPNFLANKVNDYGKFRDI 237
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALE--ARKARKLCPEAIDTF--LEELIVRRELADNF 318
P + SGLSPYL G +S + A++ ++ L + F L ELI R+ +
Sbjct: 238 P-SIKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELI-WRDFYKHL 295
Query: 319 CFYQP------NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
F+ P N+ +W +DH S K + + +T PL +A+ +
Sbjct: 296 MFHHPRLVKGANFQQKYNGLDW----YQDHPSFK--------AWCEGKTGYPLVDAAMRQ 343
Query: 373 MVYNGKMHGFMRM 385
+V G MH +RM
Sbjct: 344 LVETGWMHNRLRM 356
>gi|414173991|ref|ZP_11428618.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
gi|410890625|gb|EKS38424.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
Length = 484
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC---ALE 289
GE AA + LK FL + +Y + R+ P + A S LSP+L FG+IS ++ A
Sbjct: 212 GEAAAQKRLKD----FLDNDIASYASLRDRPDR-DATSRLSPHLRFGEISPRQVWHSASF 266
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHAS 344
A + ++ FL EL R E + + F P N S A+ W H+
Sbjct: 267 AAAGKPAISSSVAKFLSELGWR-EFSRHLLFDHPQLAERNLQSSFDAFPW-------HSD 318
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
K +++ QT P+ +A E+ + G MH +RM
Sbjct: 319 PK-----ALRAWQRGQTGYPIVDAGMRELWHTGIMHNRVRM 354
>gi|423458833|ref|ZP_17435630.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
gi|401145461|gb|EJQ52985.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
Length = 476
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 102/460 (22%), Positives = 176/460 (38%), Gaps = 64/460 (13%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL AV +PV V F +G+ ++ ++ + +++ +
Sbjct: 8 MFQKDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSASK--WWLHHAIIDVKKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIH 152
E L + +G + I + + + G + + + + +C K+ + + +
Sbjct: 62 EALGSTLI-IRKGNTLEEILSLIEQLGITAVYWNICYDPDRLQCNQKMKIMLEEKGIICK 120
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
E ++H ++ W+ +K K N +Q I K Q I S
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQEIPKPISKVQRIKGGS 170
Query: 213 IIAAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPR 267
+ A L +P I W E +G+ F + +L +Y R+ P
Sbjct: 171 SLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKACKKFFSSKLASYSEGRDFP-NQN 229
Query: 268 ALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQ 322
A S L+PYL FGQIS + L + + C + +++F+ + I RE + ++
Sbjct: 230 AHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQFI-WREFSYYLLYHY 288
Query: 323 PN--YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
P Y L KS + + E + T ++K +T P +A E+ G MH
Sbjct: 289 PFTVYKPL-------NKSFEHFPWNNEEELLT--VWQKGETGYPFIDAGMRELWQTGFMH 339
Query: 381 GFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
RM + K +L W G + L +D N +G W V
Sbjct: 340 NRARMAVASFLVKHLLIPWQEGAKWFLDTL--------LDADIANNTMGWQW----VAGS 387
Query: 436 GWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
G P F R N KFD +G Y+++ V K
Sbjct: 388 GADASPYF---RIFNPITQGEKFDKNG--EYIRKWVPELK 422
>gi|301110298|ref|XP_002904229.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262096355|gb|EEY54407.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 701
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR--EHIYTKEQFEKAQTA 362
+ ELI +L+ Y L W ++ + D ++ + +Y + E A+T
Sbjct: 529 VSELIASLKLSAPRTSALETYRKLLPPWTFSAARIGDISNTQVPGAALYDPYELESARTK 588
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALA 403
DP WN Q +V +H + MYWA +++ W A+A
Sbjct: 589 DPYWNEIQKFLVEQQYLHPLLVMYWAYRLMTWNVSSRAAIA 629
>gi|338986465|ref|ZP_08633502.1| Deoxyribodipyrimidine photo-lyase [Acidiphilium sp. PM]
gi|338206606|gb|EGO94705.1| Deoxyribodipyrimidine photo-lyase [Acidiphilium sp. PM]
Length = 263
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 92/226 (40%), Gaps = 22/226 (9%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D FL Y R+ P SGLSP+LH+G+I+ A A A TFL
Sbjct: 1 DAFLADGFGEYDRQRDLP-GIAGTSGLSPHLHWGEIAID-AVWRAAVAAPGRDAARQTFL 58
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
+ELI RE A ++ P+ + ++A ++ A+D ++ +T P+
Sbjct: 59 KELIW-REFAAYLLWHTPDLATRPMKAQFAAMPWRESAAD-------LAAWQHGRTGVPI 110
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+A ++ G MH +RM A +++ P +A +++ D
Sbjct: 111 VDAGMRQLWQTGWMHNRVRMIVASFLVKHLLLPWQA-------GERWFHDCLVDADAASN 163
Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
S V G P F R N RKFD DG AYV+R V
Sbjct: 164 AASWQWVAGSGADAAPYF---RIFNPVLQGRKFDPDG--AYVRRFV 204
>gi|402487390|ref|ZP_10834210.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
gi|401813716|gb|EJT06058.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
Length = 483
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 139/382 (36%), Gaps = 64/382 (16%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W +D R+ DN AVD A+++ P+ + L + L
Sbjct: 8 PVILWFRKDLRLDDN----QAVDAAHRSGRPI-IPLYLREPEAAGTGALGAAQAWWLHHS 62
Query: 90 QRNIEETF---QILFFLFQGEAEDNIPNFVRECGASLLV----TDFSPLREIRRCKDKIC 142
+ ++E+ Q L G A + + +RE GA + D S + R K ++
Sbjct: 63 LKALDESLRKRQGRLVLSSGGALEVLCALIRESGAEAVFWNRRYDPSGISIDSRIKHELE 122
Query: 143 NRVSDSVT-----IHE---------VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
+ ++ + +HE P W A E + + LL L
Sbjct: 123 QQAIEARSFGGQLLHEPSLLMTGSGTPYRVYTPFWRALEGAGEPGRPVEAPAKLLLASQL 182
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
P E+ +E W DW A + W GE+ A E L F
Sbjct: 183 ---PKSEK-LESWNLLPTKPDWAGDFADL-----------WT-PGEEGAQEKLGV----F 222
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
+ L Y +R+ P KP A S LSP+L G+IS R R P +
Sbjct: 223 VEDALDGYKQNRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSSRVPATDIVHFRKE 281
Query: 309 IVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
I RE + + F+ P N++ +EW ++ D + + + T
Sbjct: 282 IAWREFSYHLLFHFPRLASANWNDRFDGFEW-----RNDGDDFK-------AWCRGMTGY 329
Query: 364 PLWNASQMEMVYNGKMHGFMRM 385
P+ +A ++ +G MH +RM
Sbjct: 330 PIVDAGMRQLWRHGWMHNRVRM 351
>gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
Length = 464
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 153/378 (40%), Gaps = 57/378 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ------FLGAKARQLGFML 83
P + W+ RD RV D AL HA QA PV + L D+ + GA L + L
Sbjct: 4 PQIVWLRRDLRVADQPAL-HAAAQAG----PVIPVYVLDDERAGDHAYGGASKVWLHYSL 58
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKI 141
L + QI+ L +G+A + E GA + + + P + +D++
Sbjct: 59 ESL--CKSFGNRRSQIV--LRKGDAPQVLAGIADEVGAGCIHAIRHYEPW--WKEAEDEL 112
Query: 142 CNRVSDSVTIHEVDAHNVVP----VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ + + + D + ++P + + + + + + P ++ P
Sbjct: 113 RDALEEDRKLCLYDGNYLLPPGSVTTGSGDPYKIYTPFSKSMLEVMPPRDVLGEPETISS 172
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+ W + DW+ + + G + + GEDAA E L+ + + +Y
Sbjct: 173 PDNWPESDALEDWELLPSKPDWAGGIR---DFWDFGEDAAHERLE-----WWADEVADYD 224
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
RN P S LSP+LH+G+IS + + R + TF +E I+ R+ A N
Sbjct: 225 EGRNLPSN-DITSRLSPHLHWGEISPAQVWHALKDKRS---DGWKTFAKE-IIWRDYAQN 279
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKRE--------HIYTK--EQFEKAQTADPLWN 367
PNY R+S +D+ D+R H+ + E +++ T P+ +
Sbjct: 280 VIDQFPNY---------PRESYRDY--DERTLWRNPNAGHLIEEDLECWQRGMTGYPIVD 328
Query: 368 ASQMEMVYNGKMHGFMRM 385
A ++ G +H +RM
Sbjct: 329 AGMRQLWQTGWIHNRVRM 346
>gi|424745709|ref|ZP_18173970.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-141]
gi|422941898|gb|EKU36961.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-141]
Length = 373
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 38/249 (15%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GED A+E L D F+ L +Y ++R+ + S LSPYL+ G +S ++C
Sbjct: 108 TGEDYALEQL----DLFIEDHLSHYKSERDFS-NVKGTSQLSPYLNLGILSIRQCLQALF 162
Query: 292 KAR----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
+A L E T+L+EL+ RE + F ++ + + + + + +
Sbjct: 163 RAEHGNFHLANEGQQTWLDELLW-REFYQHILF---DFPKVSKHYPFKQNMQNIKWENNQ 218
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEAL 402
H+ ++ QT P+ +A ++ G MH +RM A +++W G + +
Sbjct: 219 AHLLA---WQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM 275
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
++ IDG G W C G P F R N +KFD +G
Sbjct: 276 --------QHLIDGDLAANNGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPNG 320
Query: 463 YIAYVKRIV 471
Y+++ V
Sbjct: 321 --DYIRQWV 327
>gi|383760053|ref|YP_005439039.1| deoxyribodipyrimidine photo-lyase Phr [Rubrivivax gelatinosus
IL144]
gi|381380723|dbj|BAL97540.1| deoxyribodipyrimidine photo-lyase Phr [Rubrivivax gelatinosus
IL144]
Length = 501
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 174/461 (37%), Gaps = 72/461 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM---LRGLR 87
+ W+ RD R D+ AL HA+ A + ++ D A R++ F+ + G+
Sbjct: 8 ALVWLRRDLRTDDHAALYHALRAARRVWCVFLFDRDILDALPRAD-RRVEFIRDSVVGVD 66
Query: 88 LLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
R + + I + G A + IP G + E ++
Sbjct: 67 AELRALAASHGIEGAGLIVRHGRALEQIPRLAAALGVQAVFASHDDEPEALVRDARVRGA 126
Query: 145 VSDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP------EYLIDYPMLEQP 197
++D+ V H + H V E+ E + G + P + L D+ + P
Sbjct: 127 LADAGVAFHSMKDH------VVFERDEVLTQG-GGPFSVFTPYRNAWLKKLDDFYLASYP 179
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCE--SGEDAAMEVLKGSKDGFLTKRLKN 255
+E+ G + + G E + + SG E+L +R+ +
Sbjct: 180 VERHAGALAPKPAGETLPTLAEIGFETTNLHALKLPSGPAGGRELLAD-----FLERIDH 234
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR---R 312
Y R+ P + S L P+L FG +S +R A EA + + +L ELI R
Sbjct: 235 YADWRDFP-AVKGPSYLGPHLRFGTLSIRRLAREAHQRSTAGSRGAEIWLSELIWREFYH 293
Query: 313 ELADNF------CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLW 366
+L + CF +P YD L WE + + + A+ + + +T P+
Sbjct: 294 QLLHHHPRVVGGCF-KPEYDRLH--WEHGKHADELFAA-----------WCEGRTGYPIV 339
Query: 367 NASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNG 421
+A+ ++ G MH +RM A + ++W G EA A +LND D NG
Sbjct: 340 DAAMHQLTRTGYMHNRLRMISASFLTKDLGIDWRRG--EAW-FARHLND---FDLASNNG 393
Query: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G W+ G +P F R N +FD +G
Sbjct: 394 --GWQWAAS----TGCDAQPYF---RIFNPVAQSERFDPEG 425
>gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
Length = 469
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 22/195 (11%)
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
QP E WT + + W A + P + E ++ F +++N
Sbjct: 170 QPAEPWTLSSEWASWVWNSAQTF----DYPRVD--SQSWPVDFETIRNQLRDFCRDQVQN 223
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRE 313
Y R+ P + S LSPYL G +SA++C + + E +L ELI RE
Sbjct: 224 YHQQRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESSMGALSEGAQVWLSELIW-RE 281
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK---AQTADPLWNASQ 370
+ +PN + EW + E E+F++ T P+ +A+
Sbjct: 282 FYQHLVAIEPNISKSRDFHEWG---------SRLEWWDDNEKFQRWCEGTTGYPIVDAAM 332
Query: 371 MEMVYNGKMHGFMRM 385
++ G MH +RM
Sbjct: 333 RQLNQTGWMHNRLRM 347
>gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 455
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 99/249 (39%), Gaps = 41/249 (16%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G GE+A +++ +L + +Y D ++ L A S LSP+LHFG +SA
Sbjct: 195 GLARGGEEAGRKLVTS----WLNGPMADY-EDGHDDLAGDATSRLSPHLHFGTVSAAELV 249
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
AR+ L EA F+ R+LA +Q D +W R SD
Sbjct: 250 HRAREKGGLGGEA---FV------RQLAWRDFHHQVLADRPDASWSDYRPRHDRWRSDAD 300
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEAL 402
E + ++ T PL +A+ ++ + G MH RM A + ++W G L
Sbjct: 301 E----IDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLYVDWRVGARHFL 356
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ +DG N + W V G RP R +N ++FD G
Sbjct: 357 DLL--------VDGDVANNQLNWQW----VAGTGTDTRP----NRVLNPVIQGKRFDARG 400
Query: 463 YIAYVKRIV 471
YV+R V
Sbjct: 401 --DYVRRWV 407
>gi|120403248|ref|YP_953077.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vanbaalenii PYR-1]
gi|119956066|gb|ABM13071.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium vanbaalenii
PYR-1]
Length = 442
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 92/409 (22%), Positives = 149/409 (36%), Gaps = 65/409 (15%)
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREI 134
R+L ++ LR L+ N++ + G IP + GA+ + DF+P
Sbjct: 43 RRLQYLYDALRDLRDNLDGRLLVT----HGHPVQRIPLLAKAVGATSVHVSEDFTPFG-- 96
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM- 193
RR D++ + + + + V P V G K+ + +
Sbjct: 97 RRRDDQVRDALGGVELVATGSPYLVSPGRVTKAD---------GTPYKVFTPFFAAWRTH 147
Query: 194 -LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW---CESGEDAAMEV-LKGSKDGF 248
P + + ID D + A++P+ G +GE AA+ + ++DG
Sbjct: 148 GWRPPAGSGPASARWIDPDDVTGGP--AAADIPDTGLQLELPAGETAALRAWTRFTRDG- 204
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
L +Y DRN P A S +S +L FG I + A + + E +L EL
Sbjct: 205 ----LADYDEDRNRP-DLAATSRMSAHLKFGAIHPRTMAADLGRG-----EGAQAYLREL 254
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
R A + P+ W W D + + +++ +T P+ +A
Sbjct: 255 AFRDFYASVLAEW-PD----SAWWNWNTAFDAIEVDDDGDAQKSFAAWKQGRTGFPIVDA 309
Query: 369 SQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423
++ G MH +RM A + L W G L + +DG N
Sbjct: 310 GMRQLAETGFMHNRVRMITASFLVKDLHLPWQWGARWFL--------EQLVDGDIANNQH 361
Query: 424 GCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G W+ CG P F R N S +KFD G YV+R V
Sbjct: 362 GWQWAAGCGT-----DAAPYF---RVFNPSTQGKKFDPSG--DYVRRWV 400
>gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces griseus XylebKG-1]
gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces griseus XylebKG-1]
Length = 455
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 99/249 (39%), Gaps = 41/249 (16%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G GE+A +++ +L + +Y D ++ L A S LSP+LHFG +SA
Sbjct: 195 GLARGGEEAGRKLVTS----WLNGPMADY-EDGHDDLAGDATSRLSPHLHFGTVSAAELV 249
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
AR+ L EA F+ R+LA +Q D +W R SD
Sbjct: 250 HRAREKGGLGGEA---FV------RQLAWRDFHHQVLADRPDASWSDYRPRHDRWRSDAD 300
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEAL 402
E + ++ T PL +A+ ++ + G MH RM A + ++W G L
Sbjct: 301 E----IDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLYVDWRVGARHFL 356
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ +DG N + W V G RP R +N ++FD G
Sbjct: 357 DLL--------VDGDVANNQLNWQW----VAGTGTDTRP----NRVLNPVIQGKRFDARG 400
Query: 463 YIAYVKRIV 471
YV+R V
Sbjct: 401 --DYVRRWV 407
>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
Length = 469
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
EV++ F +R+++Y R+ P + S LSPYL G +SA++C + ++
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSILSPYLAIGALSARQCVARLYRESEMS 264
Query: 298 --PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
E +L ELI RE + +PN + EW + + S+K ++
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEK------FQR 317
Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ + T P+ +A+ ++ G MH +RM
Sbjct: 318 WCEGNTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|302693713|ref|XP_003036535.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
gi|300110232|gb|EFJ01633.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
Length = 587
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGL 86
VVYWM +D R+ DN AL A +A K P+ + + Q A AR++ FMLR L
Sbjct: 71 VVYWMRMQDMRIEDNRALALASAEAQKTKKPLVAIYVISPQDYAAHDRGARRIDFMLRNL 130
Query: 87 RLLQRNIEE 95
R+++ ++E
Sbjct: 131 RIIKIKLDE 139
>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
Length = 469
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 43/247 (17%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GED A + L+ F+ KRL Y DR+ P + S LSP+L FGQIS ++ ++
Sbjct: 202 GEDYAHKQLQA----FVQKRLAAYEKDRDIP-SIKGTSRLSPFLSFGQISIRKVWAACQE 256
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQP---NYDSLKGAWEWARKSLKDHASDKREH 349
+A TFL+EL R+ F P NY+ + + ++ K E
Sbjct: 257 MPSSTGKA--TFLKEL-AWRDFYHMIYFTHPEQKNYELI--------EKYRNMDWQKDEE 305
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAI 404
K ++ QT P+ +A+ ++ G MH +RM A +++W G E A
Sbjct: 306 ALNK--WQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRQG-EAYFAR 362
Query: 405 AIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+ ID + G W+ G P F R N +KFD DG
Sbjct: 363 QL-------IDYDAASNIGGWQWAAST----GTDAVPYF---RIFNPITQGKKFDKDG-- 406
Query: 465 AYVKRIV 471
++K+ V
Sbjct: 407 TFIKQFV 413
>gi|126642518|ref|YP_001085502.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
[Acinetobacter baumannii ATCC 17978]
Length = 381
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 38/248 (15%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+E L D F+ + + +Y +R+ P +A S LSPYL+ G +S ++C +
Sbjct: 117 GEQYALEQL----DQFIEESVCHYKVERDFP-NIQATSKLSPYLNIGILSIRQCLQALFR 171
Query: 293 AR----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
+ L E T+L+EL+ RE + F ++ + + + + K + E
Sbjct: 172 NQHGNFHLVNEGQQTWLDELL-WREFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPE 227
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALA 403
H+ ++ QT P+ +A +++ G MH +RM A +++W G + +
Sbjct: 228 HLTA---WQMGQTGIPIVDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM- 283
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
++ IDG G W C G P F R N +KFD +G
Sbjct: 284 -------QHLIDGDLAANNGGWQW--CA--STGTDAVPYF---RIFNPITQSKKFDPEG- 328
Query: 464 IAYVKRIV 471
Y+++ V
Sbjct: 329 -EYIRQWV 335
>gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
Length = 468
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 145/408 (35%), Gaps = 93/408 (22%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQA---------NKNNVPVAVAFNLFDQFLGAK 75
D +R P + W D R+ DN AL A D N A A +Q L A
Sbjct: 3 DPQRSPTLLWFRDDLRLSDNAALKWAADHGPVIGLFIDETINRSIGAAARWWREQSLNAL 62
Query: 76 ARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD---FSPLR 132
A+ L F G+ LL+R G + +P V E + + PL
Sbjct: 63 AQDLSFY--GVPLLRRT-------------GNPLEILPKIVSEMEVKAVTWNRRYHQPLC 107
Query: 133 EIRRCKDKICNRVSDSVTIH---------EVDAHNVVP--VWVASEKLEYSAKTLRG--- 178
E+ K V H EV P V+ K + +
Sbjct: 108 EVDATLKKNLRDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYET 167
Query: 179 -KINKLLPEYL-----IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES 232
K N +P +L ++ P+LE W+ T + C
Sbjct: 168 VKNNVPVPSHLTGPEDVELPILEMEQPFWSTTL---------------------VKECAP 206
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A E L FL + L++YP R++ L A S LS +L FG+IS R E
Sbjct: 207 GEKNASEKLFD----FL-EHLQDYPQARDS-LARSATSKLSAHLRFGEISIHRVWAETAA 260
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-------KGAWEWARKSLKDHASD 345
+ E + FL+EL+ R + A + + P+ D+ + W W +
Sbjct: 261 ---IDSEGTELFLKELLWR-DFAWHRLYALPHMDTQNVRMQFNRFGWSWDPSEKDKLNTP 316
Query: 346 KREHIYTK-EQFEK-------AQTADPLWNASQMEMVYNGKMHGFMRM 385
I TK +QF + +T PL +A E+ G MH +RM
Sbjct: 317 STPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELWATGSMHNRVRM 364
>gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
17029]
gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
ATCC 17029]
Length = 471
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 35/237 (14%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL+ L Y +R+ P P S LS L +G+ISA+ +AR + FL+E
Sbjct: 216 FLSGPLDRYAAERDRPDAP-VTSRLSENLTYGEISARSLWHAGMRARAEGRAGAEKFLQE 274
Query: 308 LIVRRELADNFCFYQPNYD--SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
L RE + ++ P + +G W+ A R E++ + T +P
Sbjct: 275 L-AWREFGWHLLYHTPEIARRNWRGDWD---------AFPWRGDNPDAERWRRGMTGEPF 324
Query: 366 WNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPN 420
+A+ E+ G MH R+ Y K +L +W G + D ID +
Sbjct: 325 VDAAMRELFVTGTMHNRARLIAGSYLTKHLLTDWRVG-------KAWFEDCL-IDWDPAS 376
Query: 421 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKR 477
+G W V G P F R N + KFD + AY +R + +R
Sbjct: 377 NALGWQW----VAGSGPDASPYF---RIFNPATQAEKFDPES--AYRRRFLAEIARR 424
>gi|444305910|ref|ZP_21141685.1| deoxyribodipyrimidine photo-lyase [Arthrobacter sp. SJCon]
gi|443481714|gb|ELT44634.1| deoxyribodipyrimidine photo-lyase [Arthrobacter sp. SJCon]
Length = 475
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 108/270 (40%), Gaps = 45/270 (16%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
E GE A + L FL +++Y T RN P S LSP+L FG++S R E
Sbjct: 212 EPGEKGAADRLAD----FLDGPVEDYGTGRNIP-GTEGTSRLSPHLRFGEVSPFRVWREI 266
Query: 291 RKARK-LCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHAS 344
R+ P + F EL RE + ++ P N+ ++W R S + A+
Sbjct: 267 RRRHPGKIPADVGIFRSELGW-REFNWHLLYHNPDLATRNFRPAFDNFQWGRVSRSELAA 325
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTGPE 399
+++ +T PL +A ++ G MH +RM + K +L +W G E
Sbjct: 326 -----------WQQGKTGYPLVDAGMRQLWQTGWMHNRVRMAAASFLVKNLLTDWRIGEE 374
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
+ D +D N W V G P + R N +KFD
Sbjct: 375 -------WFWDTL-VDADAANNPANWQW----VAGSGADASPYY---RIFNPVTQSKKFD 419
Query: 460 VDG-YI-AYVKRIVGGTKKRRADSLVSGKE 487
DG Y+ A++ + G K+ + +G +
Sbjct: 420 ADGSYLRAFIPELQGLEGKQIHEPWTAGAD 449
>gi|414070032|ref|ZP_11406021.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. Bsw20308]
gi|410807544|gb|EKS13521.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 150/369 (40%), Gaps = 43/369 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQTAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC---KDKICNRVS- 146
+ + + I + + P+F C + + +F +++ + N V+
Sbjct: 61 SQLAD-YGITLHIIEA------PSF---CDCTRELINFCKANDVKHVIANTEYELNEVNR 110
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
D +HE D + + L A +++ + N++ Y + P ++++ T
Sbjct: 111 DKAILHECDERTITFTLYEGD-LIAPAGSVKNQSNEM---YKVFTPFKRAWLKQYQDTHF 166
Query: 207 SI-DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
S+ W + +++ + C E L D F+ +L +Y R+ P
Sbjct: 167 SLPQWPLTSDPIEFDESDLLKNDGCSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIP-S 225
Query: 266 PRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTF--LEELIVR---RELADNF 318
+ SGLSPYL G +S ++ ++ R L TF + EL+ R R L F
Sbjct: 226 VKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAEF 285
Query: 319 CFYQ--PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYN 376
N++ A W RKS D + + + +T PL +A+ +++
Sbjct: 286 PKLSRGDNFNEKYNAVVW-RKSESDFKA-----------WCEGRTGYPLVDAAMLQLKQT 333
Query: 377 GKMHGFMRM 385
G MH +RM
Sbjct: 334 GWMHNRLRM 342
>gi|407687838|ref|YP_006803011.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291218|gb|AFT95530.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 476
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 143/377 (37%), Gaps = 60/377 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W +D RV+DN AL A D VP+ + + ++ L L +
Sbjct: 7 IMWFRQDLRVKDNPALNAACDMGKI--VPIYIYDDTAPNGREPGGASKWWLHHSLSSLNK 64
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSV 149
+ QI F+G+ + IP ++ A + + + P +I R K + ++
Sbjct: 65 RLNGHLQI----FKGDPQTLIPKLMKSFNAKGIFWNRCYEPW-QINRDK-----TIKKTL 114
Query: 150 TIHEVDAH--NVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP----IEKWTG 203
H+ +AH N +W + L+ R P Y +E+P
Sbjct: 115 IEHDYEAHSCNGSLLWEPMKVLKKDGTPYR----VFTPYYKKGCLQVEEPRYPKAPPARI 170
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLTKRLKNY 256
T +D DS + L +P I W + GED A + L F+ + Y
Sbjct: 171 TYADVDNDSD-SDGLTSLDLLPTINWDATIEKEWSPGEDGAADNLAD----FIENSARKY 225
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLEELIVRRELA 315
R+ P S LSP+LHFG++S + + K ++I+T+L EL RE +
Sbjct: 226 KDGRDIP-SANGTSRLSPHLHFGEVSPNQVWYAIKDKFGNSEDKSIETYLSEL-GWREFS 283
Query: 316 DNFCFYQP-------NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
F+ P N K W K+LK ++K T P+ +A
Sbjct: 284 YYLLFHFPTLPNKNFNEKFDKFPWRTDAKALK--------------AWQKGNTGIPIVDA 329
Query: 369 SQMEMVYNGKMHGFMRM 385
E+ G MH +RM
Sbjct: 330 GMRELWQTGYMHNRVRM 346
>gi|410615205|ref|ZP_11326231.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
gi|410165289|dbj|GAC40120.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
Length = 484
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 153/374 (40%), Gaps = 53/374 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA-FNLFDQFLGAKARQLGFMLRGLRLL 89
+ W +D R+RDN AL +A ++ +P+ ++ + + F+ A + ++ + L L
Sbjct: 8 TLVWFRQDLRLRDNPALTYASERGLV--IPLYISDTDCPEHFVPGSASKW-WLHQSLSSL 64
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
++ L +G+A + F++ +V + + P +I+R +
Sbjct: 65 NDSLNGQLHCL----KGDASKLLIEFIQLHDIKSVVWNRSYEPW-QIKRDTQLKHALIEA 119
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTL-----RGKINKLLPEYLIDYPMLEQPIEKWT 202
+ + ++H + W +K E K RG ++K P ++ P Q IE +
Sbjct: 120 GINVQSFNSHLLWEPWQVLKKDETPYKVFTPYYRRGCLSKASPRMPVEVPKNLQ-IEYFP 178
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD---GFLTKRLKNYPTD 259
+ + +D ++ P+I W + E +G+ + FL K Y
Sbjct: 179 ESDKGLDSLELM----------PDINWHGTIEKMWTPGEQGAANHLSDFLPDGAKEYKNK 228
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE--AIDTFLEELIVRRELADN 317
R+ P A S LS +LHFG+IS + A + E +D +L EL RE + +
Sbjct: 229 RDFP-DLGATSKLSAHLHFGEISPNQVWYAAIDSLNGNTEDVGLDCYLSEL-GWREFSHS 286
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHI------YTKEQFEKAQTADPLWNASQM 371
F+ P+ + + S K EH + + ++ QT P+ +A
Sbjct: 287 LLFHFPHIP-------------QKNFSPKFEHFPWRTDDNSLKAWQLGQTGIPIVDAGMR 333
Query: 372 EMVYNGKMHGFMRM 385
E+ G MH +RM
Sbjct: 334 ELWQTGTMHNRLRM 347
>gi|375263826|ref|YP_005026056.1| deoxyribodipyrimidine photolyase [Vibrio sp. EJY3]
gi|369844253|gb|AEX25081.1| deoxyribodipyrimidine photolyase [Vibrio sp. EJY3]
Length = 471
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 36/225 (16%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTFL 305
F +R Y R+ P S LSPYL G +S ++C L A + E T+L
Sbjct: 218 FARERSDEYREQRDFPAT-DGTSQLSPYLAIGALSPRQCIARLFAENEQSDLTEGKATWL 276
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD-- 363
E I+ RE + ++P KG +W DK + Y ++ FE+ +T
Sbjct: 277 SE-IIWREFYQHLLVFEPKLVKGKGFIDW---------EDKIQWSYDEKAFERWKTGTTG 326
Query: 364 -PLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGR 417
P+ +A+ ++ G MH +RM A + ++W G + ++ +DG
Sbjct: 327 YPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEKYFMSQL--------VDGD 378
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G WS G +P F R N KFD DG
Sbjct: 379 FAANNGGWQWSAS----TGCDGQPYF---RIFNPVSQGEKFDADG 416
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 188/465 (40%), Gaps = 77/465 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++ W+ +D R+ DN AL HA + VPV + + + +G+ ++ ++ L +
Sbjct: 5 IIVWIRKDFRLVDNPALFHAAKEGMV--VPVYIHDDYEESSMGSASK--WWLHHALNDFK 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKD--------K 140
+IE+ Q + +G +D + + + A + + + P ++R K+ +
Sbjct: 61 NSIEK-IQGTLIVQKGNPKDVLQKLLHQTNAQDIYWNRRYEP-HVLKRDKELQAFFSEQQ 118
Query: 141 ICNRVSDSVTIHE---VDAHNVVPVWVASEKLEYSAK-TLRGKINKLLPEYLIDYPMLEQ 196
I R + +HE + N P V + + S K ++ + K+ +
Sbjct: 119 INIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKV-----TSIQASSK 173
Query: 197 PIEKWTGTR----QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
P+E + + SI WD I + E+ E A++V K FL +
Sbjct: 174 PVESLSVSDLDLLPSIPWDETIKST------------WEATEKGAIDVFKT----FLKNK 217
Query: 253 LKNYPTDRNNPLKPRAL-SGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLEELIV 310
L +Y R+ P + AL S LSPY GQ+SA+ R KA K+ +A + E+ +
Sbjct: 218 LLHYEKGRDFPAE--ALNSFLSPYFATGQLSARVLYHYLRTKAEKVSSDAFEQ-QAEMFI 274
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHA-SDKREHIYTKEQFEKAQTADPLWNAS 369
R+ + +F YQ Y E + K +D E + + ++ +T PL +A
Sbjct: 275 RQLIWRDFA-YQLLYHFPHTTTEPLNEKFKQFQWADGNEEL---QAWKNGKTGYPLVDAG 330
Query: 370 QMEMVYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424
E+ G MH +RM A ++ W G A + D +D N +G
Sbjct: 331 MRELWETGFMHNRVRMIAASFLVKHLLIHWKHG-------ANWFFDTL-VDADLANNTMG 382
Query: 425 CMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
W V G P F R N KFD +G Y+K+
Sbjct: 383 WQW----VAGSGADAAPYF---RIFNPITQSEKFDKEG--EYIKK 418
>gi|323494304|ref|ZP_08099416.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
gi|323311467|gb|EGA64619.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
Length = 475
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 25/219 (11%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR-KLCPEAIDTFLE 306
F+ R + Y R+ P S LSPYL G +S ++C K P + ++
Sbjct: 218 FVAHRSERYSDLRDIP-SIEGTSRLSPYLAIGALSVRQCMARLHDQHPKPLPPGREMWMS 276
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWA-RKSLKDHASDKREHIYTKEQFEKAQTADPL 365
ELI R E + +++ K EW R S ++ ++D + ++K QT P+
Sbjct: 277 ELIWR-EFYQHLIYFESKLSKGKCFLEWGDRLSWRNSSADI-------DAWKKGQTGYPI 328
Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
+A+ ++ + G MH +RM A ++ + L + ++ ++Y + Y
Sbjct: 329 VDAAMRQLNHTGWMHNRLRMVVASFLI-------KDLHVDWHVGERYFMSKLVDGDYAAN 381
Query: 426 M--WSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
W C G +P F R N +FD DG
Sbjct: 382 NGGWQWCA--STGCDGQPYF---RIFNPVSQGERFDPDG 415
>gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
Length = 519
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 98/256 (38%), Gaps = 45/256 (17%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC- 286
W E A+ L D FLT L Y R+ P +P A S LSP+L FG +S ++
Sbjct: 239 AWPAPDEAGALARL----DRFLTTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVW 293
Query: 287 ---ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY--DSLKGAWEWARKSLKD 341
A D FL EL RE + ++ P D+ + ++
Sbjct: 294 HAVQGAANAGGAAYAAHADKFLSELGW-REFSYTLLYHFPALATDNFRAQFD-------- 344
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTT 396
A R+ +++ +T PL +A E+ G MH +RM A +++W
Sbjct: 345 -AMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIKHLLIDWRA 403
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMW-SICGVHDQGWKERPVFGKIRYMNYSGCK 455
G EA + D +D N W + CG P F R N
Sbjct: 404 G--EA-----WFRDTL-VDADPANNAASWQWVAGCGA-----DAAPYF---RIFNPVAQG 447
Query: 456 RKFDVDGYIAYVKRIV 471
+KFD G AYV+R V
Sbjct: 448 QKFDPGG--AYVRRWV 461
>gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter oleivorans DR1]
gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter oleivorans DR1]
Length = 480
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 36/240 (15%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE A+E L D F+ L +Y +R+ P + S LSPYL+ G +S ++C
Sbjct: 215 TGEGFALEQL----DVFIENHLSDYKLERDFP-NVKGTSQLSPYLNLGILSIRQCLQALF 269
Query: 292 KAR----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
+ + E T+L+EL+ RE + F ++ + + + + K +
Sbjct: 270 RTEHGNFHIANEGQQTWLDELL-WREFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNP 325
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEAL 402
EH+ ++ QT P+ +A ++ G MH +RM A +++W G + +
Sbjct: 326 EHLTA---WQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM 382
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
++ IDG G W C G P F R N +KFD +G
Sbjct: 383 --------EHLIDGDLAANNGGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPNG 427
>gi|381201670|ref|ZP_09908795.1| deoxyribodipyrimidine photo-lyase [Sphingobium yanoikuyae XLDN2-5]
Length = 458
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE+ A L D FL + + +Y R+ P + S LSP+LHFG+IS + +
Sbjct: 201 GEEGAKRYL----DSFLGE-VGDYAVARDLPSQ-EGTSRLSPHLHFGEISPAKVWHRVAQ 254
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD-HASDKREHIY 351
A P +L+ELI R+ A N + P Y S E A+ + H D RE
Sbjct: 255 A----PGDATVYLKELIW-RDYAHNQVWALPTYGS-----ENAQPAFDAMHWRDLREARG 304
Query: 352 TKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+++ +T P+ +A ++ G MH +RM
Sbjct: 305 DWTAWKRGRTGYPIVDAGMRQLWQTGWMHNRVRM 338
>gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
A6]
gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
A6]
Length = 475
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 33/164 (20%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A++ L FL +++Y T RN P S LSPYL FG++S R E R+
Sbjct: 214 GEKGAVDRLTD----FLDGPIEDYGTGRNIP-GTEGTSRLSPYLRFGEVSPFRVWREIRR 268
Query: 293 AR-KLCPEAIDTFLEELIVRR----------ELADNFCFYQPNYDSLKGAWEWARKSLKD 341
+ P + F EL R ELA ++P+++ EWA S K+
Sbjct: 269 RHPRQVPADVGIFRSELGWREFNWHLLYHNPELATR--SFRPDFEKF----EWASLSRKE 322
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A+ +++ +T PL +A ++ G MH +RM
Sbjct: 323 LAA-----------WQQGRTGYPLVDAGMRQLWQTGWMHNRVRM 355
>gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
Length = 463
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 147/374 (39%), Gaps = 52/374 (13%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFMLR 84
P + W+ RD R+ DN AL HA PV + L D+ LG AR ++
Sbjct: 4 PQIVWLRRDLRMADNPALYHAAKAG-----PVVAVYVLDDERPKDHKLGGAARW--WLHH 56
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
L L ++ + L +G+A + + GA + + R K
Sbjct: 57 SLESLGKSFGARNSRIV-LRRGDAVEELKTVANAVGAETVHAN----RHYEPWWRKAQGE 111
Query: 145 VSDSVTIHEVDAHNVVP----VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
+++ + + D + + P + + + + + ++ P + P +
Sbjct: 112 LAEELELKLYDGNYLFPPGHVTTGSGDPYKIYTPFSKAMLQEMPPRDEVPEPETLSSPGE 171
Query: 201 WTGTRQSIDWDSI-----IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
W + DW+ + A LR V GEDAA E L + + +
Sbjct: 172 WPASDDLGDWNLLPTKPDWAGGLRDFWTV--------GEDAAHERLD-----WWSDEVDK 218
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELA 315
Y RN P S +SP+LH G+IS + + R + T+ +ELI R
Sbjct: 219 YDDGRNMP-SVDETSQMSPHLHHGEISPVQIWHRFKDKRS---DGWKTYEKELIWRDYAQ 274
Query: 316 DNFCFYQPNY--DSLKGAWEWARKSLKDHASDKREHIYTKE--QFEKAQTADPLWNASQM 371
+ C + P Y +S + W+ A + ++ R HI +E +++K QT P+ +A
Sbjct: 275 NVICQF-PAYPKESYRDGWD-ADMAWRN---PNRGHIIQEELKRWQKGQTGYPIVDAGMR 329
Query: 372 EMVYNGKMHGFMRM 385
++ G MH +RM
Sbjct: 330 QLWQTGWMHNRVRM 343
>gi|404317161|ref|ZP_10965094.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi CTS-325]
Length = 468
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 25/177 (14%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALE 289
GEDAA + L FL L Y DR+ P S LSP+L FG+ISA++ L
Sbjct: 197 GEDAARDCLPR----FLESTLSTYTEDRDVP-GIDGTSRLSPHLRFGEISARQAWYATLA 251
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDK--R 347
+ FL ELI R +F NY L + +R ++D S R
Sbjct: 252 FMDEHHSARAGGEKFLSELIWR-----DF-----NYHQLYHRRDISRHDMRDTLSGIAWR 301
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPE 399
+ E + + QT P+ +A ++ G MH +RM A +++W G E
Sbjct: 302 DDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLTKNLLIDWRKGEE 358
>gi|403416444|emb|CCM03144.1| predicted protein [Fibroporia radiculosa]
Length = 591
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 111/456 (24%), Positives = 177/456 (38%), Gaps = 80/456 (17%)
Query: 16 IRVLKQGSLDKKRG-PVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
+ LK + +G VVYWM D R+ DN AL A A K+NVP+ V F L Q
Sbjct: 55 LNALKDNARSSPKGASVVYWMRMEDLRISDNRALAQASALAQKDNVPLVVLFVLSPQDYI 114
Query: 74 A---KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV----RECGASLLVT 126
A AR++ F LR L ++ ++ E + +IP+ V +E GA+ L
Sbjct: 115 AHDRSARRIDFTLRNLHEIKSSLAE-HHVPLCTTSHTPRISIPSHVLSLLKEWGATQLFA 173
Query: 127 DFSP-----LREIRRC----KDKI-CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT- 175
+ R+I+ C K+ I C+ V D + D + E YS +
Sbjct: 174 NIEHEVDELRRDIKLCELAKKEGIDCSFVHDKCIVPPGDI-------LTKEGKAYSVYSP 226
Query: 176 -LRGKINKLLPE----YLIDYPMLEQPI-----EKWTGTRQSIDWDSIIAAVLRKGAEVP 225
LR I L + +L P L G + + + E
Sbjct: 227 FLRSWIKHLSLKKEDIHLTHAPTLADNAFSIRDHSTFGRLFEVPVPEEVEGFTLQPDEKE 286
Query: 226 EIGWC-ESGEDAAMEVL--------KGSKDGFLTKRLKNYPTDRNNPLKPR--------- 267
+ +C +GEDAA ++L +GS+ G + +N RN+ R
Sbjct: 287 RMRFCWPAGEDAARQILDRFVHTMARGSQLGAVNPLPENAKAPRNSAKDSRLGKYKAARD 346
Query: 268 -----ALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR-------RELA 315
S LSPYL G ISA++C R + ID E I R R+
Sbjct: 347 KVDADTTSRLSPYLAAGVISARQC---IRATTEFSSGKIDVSSETGIGRWVQEIAWRDFY 403
Query: 316 DNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
+ P S+ ++ ++K A ++H+ + ++ +T P+ +A +
Sbjct: 404 THVLALFPRV-SMGRPFQEKFANIKWEAETHKDHL---QAWKDGRTGVPIVDAGMRQARA 459
Query: 376 NGKMHGFMR----MYWAKKIL-EWTTGPEEALAIAI 406
G MH +R MY K ++ +W G + + I I
Sbjct: 460 MGWMHNRLRMIVAMYLVKDLMIDWRLGEKYFMEILI 495
>gi|389796932|ref|ZP_10199978.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 116-2]
gi|388448025|gb|EIM04016.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 116-2]
Length = 470
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 104/462 (22%), Positives = 171/462 (37%), Gaps = 81/462 (17%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
RD R+ DN A A + + +PV + + + A A ++ L L R + +
Sbjct: 10 RDLRLADNPAWSAACAE-HAQVLPVFI-HSGDEGLWSAGAASRWWLHHSLAALARQLHDA 67
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L L +GE D + + GA + + + P R + K R +D + +H
Sbjct: 68 GAGLH-LRRGEPLDILRALIASSGARAVYWNRLYEPAAIARDTRIKSALR-ADGIAVHSH 125
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW-----------TG 203
+A W + + K L P+ P+ + W
Sbjct: 126 NAALWCEPWAIATQQAAPYKVFTPYWRNLRPQLQPVEPLPAPHVPGWHELPDGLPLAALE 185
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
I W +AA + G E+G +E+ F + +Y R+ P
Sbjct: 186 LLPRIAWAGGLAARWQPG---------EAGARELLEI-------FGDDAIGDYAHARDLP 229
Query: 264 LKPRALSGLSPYLHFGQISAQRCALE-----ARKARKLCPEAIDTFLEELIVRRELADNF 318
+ S LSP+LHFG+IS ++ E + P+ ++ +L EL RE A +
Sbjct: 230 AR-HGTSRLSPHLHFGEISPRQIQFELDRRARATDARRRPD-LEPYLRELGW-REFAHHL 286
Query: 319 CFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
++ P N++ + WA DHA E++++ +T PL +A E+
Sbjct: 287 LYHFPHTPTGNFNPRFNDFRWAP---ADHA--------LLERWQRGRTGIPLVDAGMREL 335
Query: 374 VYNGKMHGFMRMYWAKKIL-----EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMW- 427
G MH +RM A + W G A + D +D N +G W
Sbjct: 336 WRTGWMHNRVRMIVASFLTKHLRQHWQHG-------ARWFWDTL-VDADLANNTLGWQWV 387
Query: 428 SICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
+ CG P F R N +KFD DG Y++R
Sbjct: 388 AGCGA-----DAAPYF---RVFNPVTQAKKFDPDGI--YLRR 419
>gi|376283622|ref|YP_005156832.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae 31A]
gi|371577137|gb|AEX40805.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 31A]
Length = 446
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 102/278 (36%), Gaps = 54/278 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHGVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIE--KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P QPI+ + + WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKSAQPIDDRETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLEDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|262274043|ref|ZP_06051855.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
gi|262221853|gb|EEY73166.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
Length = 483
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 182/472 (38%), Gaps = 86/472 (18%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W RD RV+DN AL A K+ PV + ++ + KA L M L +QR
Sbjct: 3 LVWFRRDLRVKDNVALTEAC----KSGEPVIAIY--YETPVQWKAHALAPMQADL--IQR 54
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT-DFSPLREIRRCKDKICNRVSDSVT 150
+ Q L L NIP R + + L + + D C R ++
Sbjct: 55 RLVTLRQELETL-------NIPLLFRSVDRYKDINQSLAQLCQQYQIADIFCTRDYET-- 105
Query: 151 IHEVDAHNVVP-----VWVASEKLEYSAKTLRGKI-NKLLPEYLIDYPMLEQPIEKWT-- 202
EVD N + + +Y G + N Y + P + I + T
Sbjct: 106 -DEVDRDNAIAGMLSLTGTTLHRFDYKCIFAPGMVTNGAGNTYRVFTPFKKAWITQATQL 164
Query: 203 -----GTRQSIDWDSIIAAVLRKGAEVP-------EIGWCESGEDAAMEVLKGSKDGFLT 250
G + D++ +A+LR+ ++ +GW +D+A +++ +D F
Sbjct: 165 DLSPIGAPSPVKTDALTSALLRQPCQIAFRYPQCDSVGW--PIDDSA--IIQRLRD-FCR 219
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE----AIDTFLE 306
R+ +Y R+ P P S LSPYL G IS ++C C E +L
Sbjct: 220 YRVDHYQATRDFPAIP-GTSQLSPYLAIGAISPRQCLARLLAEVPNCMEKDAGGAHVWLS 278
Query: 307 ELIVRRELADNFCFYQ----PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
ELI R FYQ D KG A + D+ R+ + +++++ +T
Sbjct: 279 ELIWRE-------FYQHIAAAYIDVSKGK---AFQDWTDNIEWNRDEL-QFQRWKQGKTG 327
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGR 417
P+ +A+ ++ G MH +RM A + ++W G Y K IDG
Sbjct: 328 FPIVDAAMRQLNDTGWMHNRLRMIVASFLVKDLHIDWRWGER-------YFMSKL-IDGD 379
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
G WS G +P F R N + +KFD + + +++R
Sbjct: 380 FAANNGGWQWSA----STGTDAQPYF---RVFNPASQSKKFDPN--VRFIRR 422
>gi|396469420|ref|XP_003838401.1| hypothetical protein LEMA_P113370.1 [Leptosphaeria maculans JN3]
gi|312214969|emb|CBX94922.1| hypothetical protein LEMA_P113370.1 [Leptosphaeria maculans JN3]
Length = 633
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 107/452 (23%), Positives = 171/452 (37%), Gaps = 78/452 (17%)
Query: 26 KKRGPVVYWMF-RDQRVRDNWALIHAVDQANKNN---VPVAVAFNLFDQFLGAKARQLGF 81
K+ V +W +D R++DN AL HA A KN V V V + + G A ++ F
Sbjct: 142 KQVDKVAHWFHPKDLRIQDNTALHHASQLAQKNKQHLVCVYVNCAADESWHGTSAARVDF 201
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV---RECGASLLVTDFS-PLREIRRC 137
M GL+L+Q+ +++ L FL +D + + +E G S + + + EIRR
Sbjct: 202 MYEGLKLIQKELKDLNIPLVFLECENRKDIVSTVISWFKEQGVSHVFGNIEYEIDEIRR- 260
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR--GKINKLLPEYLIDYPML- 194
K+ + D + +V H+ V L S K ++ K + + D P L
Sbjct: 261 DIKLVKTIGDDI---QVSLHHDQTVVEPGTMLTGSGKPMKIFTPYFKAWLDIVKDQPSLL 317
Query: 195 -EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGED---------AAMEVLKGS 244
P D +S+ + A+ + E+ ED
Sbjct: 318 DTNPPPAVNPASAKQDLESLFDTPAPRPAKDKQF---ENDEDKKRIRKFWPPGYTAASTR 374
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
D FL K + NY R++P K + S LSPY G S R AL RK + D F
Sbjct: 375 MDKFL-KHIPNYAATRSDPSK-DSTSRLSPYFSAGMYSV-RSAL--RKVTDYNRGSTD-F 428
Query: 305 LEEL-----------IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E IV REL P + S+ S++ D +H
Sbjct: 429 RESAASAGVYAWVREIVFRELYRQTTLCTP-HTSMNLPQNLKFNSVR--WEDNEDHW--- 482
Query: 354 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRM-------------------YWAKKILEW 394
+ + QT P +A ++ + MH +RM Y+A+ +++W
Sbjct: 483 QAWINGQTGVPFVDAGMRQLAHEAWMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDW 542
Query: 395 -----TTGPEEALAIAIYLNDKYEIDGRDPNG 421
T G E + + N + + DP+G
Sbjct: 543 DLGNNTQGWEPSYTV---FNPTSQAEKNDPDG 571
>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|376267016|ref|YP_005119728.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|364512816|gb|AEW56215.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
Length = 476
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 98/442 (22%), Positives = 171/442 (38%), Gaps = 57/442 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--IGSASK--WWLHHAIIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI-HEVD 155
L + +G E+ I + + + G + + + + + K+ + D I E +
Sbjct: 65 GSTLI-IRKGSTEEEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGMICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ WV +K K N + ++ +PI K QSI + +
Sbjct: 124 SHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ------VIHKPISK----VQSIKGGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
+ L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 174 SSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFP-NQNAHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + C + +++F+ +LI R F +Y Y
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWRE-----FSYYML-Y 286
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A++ KS + + + + ++K +T P +A E+ G MH RM
Sbjct: 287 HYPFTAYKPLNKSFEHFPWNNEKELL--RVWQKGETGYPFIDAGMRELWQTGFMHNRTRM 344
Query: 386 YWAKKILE-----WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
A +++ W G A + D +D N +G W V G
Sbjct: 345 AVASFLIKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDG 462
P F R N KFD +G
Sbjct: 393 PYF---RIFNPITQGEKFDKNG 411
>gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
Length = 277
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 18/156 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE+ A E L+ F+ RL Y +R+ P KP A S LSP+L G+IS R R
Sbjct: 5 GEEGAQEKLRT----FIEDRLDGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRG 59
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
K P A + I R+ + + + P + WE D+ E
Sbjct: 60 LSKHLPAADIVHFRKEIAWRDFSYHLLAHFPRLATAN--WE--------DRFDRFEWGSA 109
Query: 353 KEQF---EKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+E F + T P+ +A ++ G MH +RM
Sbjct: 110 EEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRM 145
>gi|407683884|ref|YP_006799058.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245495|gb|AFT74681.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
Length = 474
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 144/382 (37%), Gaps = 72/382 (18%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W +D RV+DN AL A D VP+ + + ++ L L +
Sbjct: 7 IMWFRQDLRVKDNPALNAACDMGKI--VPIYIYDDTAPNGREPGGASKWWLHHSLSSLNK 64
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSV 149
+ QI F+G+ + +P ++ A + + + P +I R K + ++
Sbjct: 65 RLNGHLQI----FKGDPQTLVPKLMKAFNAKGIFWNRCYEPW-QINRDK-----TIKKTL 114
Query: 150 TIHEVDAH--NVVPVWVASEKLEYSAKTLR--------GKINKLLPEY------LIDYPM 193
H+ +AH N +W + L+ R G + P Y I Y
Sbjct: 115 IEHDYEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYAD 174
Query: 194 LEQPIEKWTGTR--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ + T SI+WD+ I E W GED A + L F+
Sbjct: 175 VDNDSDGLTSLDLLPSINWDATI-----------EKEWS-PGEDGAADNLAD----FIEN 218
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLEELIV 310
+ Y R+ P S LSP+LHFG++S + + K ++I+T+L EL
Sbjct: 219 SARKYKDGRDIP-SANGTSRLSPHLHFGEVSPNQVWYAIKDKFGNSEDKSIETYLSEL-G 276
Query: 311 RRELADNFCFYQP-------NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RE + F+ P N K W K+LK ++K T
Sbjct: 277 WREFSYYLLFHFPTLPNKNFNEKFDKFPWRTDAKALK--------------AWQKGNTGI 322
Query: 364 PLWNASQMEMVYNGKMHGFMRM 385
P+ +A E+ G MH +RM
Sbjct: 323 PIVDAGMRELWQTGYMHNRVRM 344
>gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
Length = 465
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 29/177 (16%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--AL 288
+ GE AA L F+ RL Y R+ P +P A SGLSP L FG IS ++ A+
Sbjct: 206 QPGEQAAHARLAT----FMATRLPGYARLRDLPARP-ATSGLSPCLRFGHISPRQIWHAV 260
Query: 289 EAR---KARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
EA+ A +C FL E + R+ A F P+ + E+ R + +
Sbjct: 261 EAQGDVDADGMC------FLSE-VGWRDFAHATLFDCPDMATRSLRPEYDRMPWRTDPAG 313
Query: 346 KREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTG 397
R +++ +T P+ +A E+ + G MH +RM A +L+W G
Sbjct: 314 LRA-------WQQGRTGYPIVDAGMRELWHTGWMHNRVRMIVASFLTKHLLLDWRAG 363
>gi|84495534|ref|ZP_00994653.1| Phr [Janibacter sp. HTCC2649]
gi|84385027|gb|EAQ00907.1| Phr [Janibacter sp. HTCC2649]
Length = 455
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 106/454 (23%), Positives = 166/454 (36%), Gaps = 81/454 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL--GAKARQLGFMLRGLRLL 89
V W+ RD R D+ AL+ A D A V VA+ + D L GA A + ++ L
Sbjct: 4 VLWLRRDLRRADHPALLAARDAAGGELV---VAY-VIDPALWAGAGAVRRAWLAAALEAT 59
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
+ ++ +L+ G+ + +P + GA+ + + R R ++V
Sbjct: 60 REEFDDGLTLLW----GDPREVVPALAKRVGATSV--------HVTRETTPFGRRRDETV 107
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-LEQPIEK-WTG---- 203
+A++ +E+ + L + L P + P K W G
Sbjct: 108 ASS-----------LAAQGIEWVETGTPYAVGPGLVQNLSGAPYKVFTPFAKAWRGHGWP 156
Query: 204 ---------TRQSIDWDSIIAAVLRKGAEVPEI-GWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + D+ + + P++ +GE AAM + F L
Sbjct: 157 DPAPRPSELPLRHVRNDAKATQAIEEALAAPDLPDLPAAGERAAMARWRE----FCETGL 212
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
Y TDR+ P S LSPYL G + R L R+ E T++ EL R
Sbjct: 213 TAYATDRDLPAT-DGTSRLSPYLKLGVVH-PRTLLADLAGRR--GEGAQTYINELGWREF 268
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
AD ++ P+ AW+ R L A D E E ++ T P+ +A ++
Sbjct: 269 YAD-VLWHNPS-----SAWKDLRDPLAGMAYD--EPADAIEAWQTGTTGYPIVDAGMRQL 320
Query: 374 VYNGKMHGFMRMYWAKKILE-----WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+ G MH +RM A + + W G L + IDG + G W
Sbjct: 321 LAQGWMHNRVRMITASFLTKDLHVWWPVGARHFLELL--------IDGDIASNNHGWQW- 371
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
V G P F R N KFDVDG
Sbjct: 372 ---VAGTGTDASPYF---RVFNPVTQGEKFDVDG 399
>gi|429886347|ref|ZP_19367906.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
gi|429226676|gb|EKY32756.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
Length = 469
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQTRDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGEISEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
Length = 476
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 176/455 (38%), Gaps = 59/455 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAIIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI-HEVD 155
L + +G ++ I + V + G + + + + + K+ + D I E +
Sbjct: 65 GSTLI-IRKGSTQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGMICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIHKPISK----VQSIKGGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 174 VSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFP-NQNAHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A++ KS + + E + ++K T P +A E+ G MH RM
Sbjct: 291 ----TAYKPLNKSFEHFPWNNEEELL--RVWQKGDTGYPFIDAGMRELWQTGFMHNRTRM 344
Query: 386 ----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKER 440
+ K +L W G A + D +D N +G W V G
Sbjct: 345 AVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADAS 392
Query: 441 PVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
P F R N KFD +G Y+++ V K
Sbjct: 393 PYF---RIFNPITQGEKFDKNG--EYIRKWVPELK 422
>gi|239501100|ref|ZP_04660410.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB900]
gi|421677885|ref|ZP_16117774.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC111]
gi|410392766|gb|EKP45123.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC111]
Length = 480
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 159/394 (40%), Gaps = 51/394 (12%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGTSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A++ L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALDQL----DQFIEESVC 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIV 310
+Y +R+ P + S LSPYL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKLERDFP-HIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELL- 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
RE + F ++ + + + + K + EH+ ++ QT P+ +A
Sbjct: 292 WREFYQHILF---DFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQTGQTGIPIVDAGM 345
Query: 371 MEMVYNGKMHGFMRMYWA-----KKILEWTTGPE 399
+++ G MH +RM A +++W G +
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQ 379
>gi|445436804|ref|ZP_21440809.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC021]
gi|444754803|gb|ELW79416.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC021]
Length = 480
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 38/263 (14%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+E L D F+ + +Y +R+ P S LSPYL+ G +S ++C +
Sbjct: 216 GESYALEQL----DQFVEDSVSHYKVERDFP-HVHGTSKLSPYLNIGILSVRQCLQALFR 270
Query: 293 AR----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
+ L E T+L+ELI RE + F ++ + + + + K + E
Sbjct: 271 NQHGNFHLDNEGQQTWLDELI-WREFYQHILF---DFPYVSKHLPFKKDTQKIKWNHNPE 326
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALA 403
H+ + ++ QT P+ +A +++ G MH +RM A +++W G + +
Sbjct: 327 HL---KAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM- 382
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG- 462
++ IDG G W C G P F R N +KFD +G
Sbjct: 383 -------QHLIDGDLAANNGGWQW--CA--STGTDAVPYF---RIFNPISQSQKFDPNGD 428
Query: 463 YI-AYVKRIVGGTKKRRADSLVS 484
YI +VK + K D S
Sbjct: 429 YIRKWVKELAHLDNKSIHDPYSS 451
>gi|344207024|ref|YP_004792165.1| FAD-binding DNA photolyase [Stenotrophomonas maltophilia JV3]
gi|343778386|gb|AEM50939.1| FAD-binding DNA photolyase [Stenotrophomonas maltophilia JV3]
Length = 471
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 23/161 (14%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A+E L +DG L+ Y R+ P + S LSP+LHFG+I+ R A
Sbjct: 201 QPGEAGALEALSVFEDG----ALRGYREQRDLPDR-VGTSRLSPHLHFGEIAPWRIAHAL 255
Query: 291 RKARKLCPEA-IDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHAS 344
R +A ID +L +L R+ A + + P N + + WA S
Sbjct: 256 EGLRSAGTDADIDGYLRQL-GWRDFAYHLLHHFPKTPTDNLNPRFDRFPWATP------S 308
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D + H +++ T P+ +A E+ + G MH +RM
Sbjct: 309 DAQLH-----DWQRGNTGVPIVDAGLRELWHTGYMHNRVRM 344
>gi|445490506|ref|ZP_21459219.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
AA-014]
gi|444765769|gb|ELW90058.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
AA-014]
Length = 480
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 107/469 (22%), Positives = 184/469 (39%), Gaps = 74/469 (15%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W +D R+ D+ AL HA Q + V ++ + Q A + + F LR LR LQ+ +
Sbjct: 9 WFRQDLRIHDHAALWHASQQGPSLGL-VILSPEQWKQHADAPIK-ISFYLRQLRTLQKEL 66
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
I + I NF+ + + + EI + K V D + H
Sbjct: 67 A-ALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRHG 125
Query: 154 VDA-----HNVVP-------------VWVASEKLEYSAKTLRGKINKLLPE-YLIDYPML 194
+ + P V+ A +K Y+ G LP+ Y +
Sbjct: 126 KELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSG-----LPQCYPVPNKQN 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E P++ G ++ID D I ++ + W GE A+E L D F+ + +
Sbjct: 181 EVPLDFLQG--KNIDLDEIEKLFCSSLSKEQQDLW-PVGEQYALEQL----DQFIEESVF 233
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK----LCPEAIDTFLEELIV 310
+Y +R+ P +A S LS YL+ G +S ++C + + L E T+L+EL+
Sbjct: 234 HYKVERDFP-HIQATSKLSSYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLW 292
Query: 311 RRELADNFCFYQP---NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
R FYQ ++ + + + + K + EH+ ++ QT P+ +
Sbjct: 293 RE-------FYQYILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTA---WQTGQTGIPIVD 342
Query: 368 ASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
A +++ G MH +RM A +++W G + + ++ IDG
Sbjct: 343 AGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM--------QHLIDGDLAANN 394
Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G W C G P F R N +KFD +G Y+++ V
Sbjct: 395 GGWQW--CA--STGTDAVPYF---RIFNPIAQSKKFDPEG--EYIRQWV 434
>gi|441186530|ref|ZP_20970548.1| deoxyribodipyrimidine photo-lyase, partial [Streptomyces rimosus
subsp. rimosus ATCC 10970]
gi|440613908|gb|ELQ77254.1| deoxyribodipyrimidine photo-lyase, partial [Streptomyces rimosus
subsp. rimosus ATCC 10970]
Length = 252
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 42/221 (19%)
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR----RELA 315
R + L A S LSP+LHFG +SA ARKA D F+ +L R + LA
Sbjct: 13 RQDDLAGDATSRLSPHLHFGTLSAVELVQRARKAGGEG-AGGDAFVRQLAWRDFHHQVLA 71
Query: 316 DNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVY 375
+Y + W D++E E + +T P+ +A+ ++ +
Sbjct: 72 ARPSAAHADYRTRHDRWR----------RDEQE----AEAWRTGRTGYPIVDAAMRQLAH 117
Query: 376 NGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC 430
G MH R+ A + L+W G L++ +DG N + W+
Sbjct: 118 EGWMHNRARLLTASFLTKTLYLDWRLGAAHFLSLL--------VDGDLANNQLNWQWAAG 169
Query: 431 GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G RP R +N ++FD DG AYV+R V
Sbjct: 170 ----TGTDTRPN----RVLNPLAQAKRFDADG--AYVRRWV 200
>gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116]
Length = 471
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 95/239 (39%), Gaps = 38/239 (15%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTFL 305
F +R Y R+ P S LSPYL G +S ++C L A + T+L
Sbjct: 218 FARERSDAYQEKRDLP-SVDGTSQLSPYLAIGALSPRQCIARLYAENPHTDLTDGKATWL 276
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD-- 363
E I+ RE + ++P KG W DK E Y + FE+ +T
Sbjct: 277 SE-IIWREFYQHLLVFEPKLVKGKGFIPW---------EDKIEWSYDEAAFERWKTGTTG 326
Query: 364 -PLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGR 417
P+ +A+ ++ G MH +RM A + ++W G A +++ + D
Sbjct: 327 YPIVDAAMRQLNTTGWMHNRLRMIVASFLTKDLHIDWRWGE------AYFMSKLVDGDFA 380
Query: 418 DPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK 476
NG G WS G +P F R N KFD DG A+V+ V K+
Sbjct: 381 ANNG--GWQWSAS----TGCDGQPYF---RIFNPISQGEKFDSDG--AFVRYWVPEIKQ 428
>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
Length = 469
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|360038062|ref|YP_004939824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|379743509|ref|YP_005334561.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|417812104|ref|ZP_12458765.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|417816596|ref|ZP_12463226.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|418329963|ref|ZP_12940997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|418337496|ref|ZP_12946391.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|418339492|ref|ZP_12948380.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|418349168|ref|ZP_12953900.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|418353785|ref|ZP_12956510.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|419824099|ref|ZP_14347628.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|421316788|ref|ZP_15767358.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|421319836|ref|ZP_15770394.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|421323878|ref|ZP_15774405.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|421326850|ref|ZP_15777368.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|421331937|ref|ZP_15782416.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|421335570|ref|ZP_15786033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|421341106|ref|ZP_15791536.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|421346109|ref|ZP_15796493.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|422885232|ref|ZP_16931672.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|422897943|ref|ZP_16935363.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|422904100|ref|ZP_16939052.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|422915375|ref|ZP_16949824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|422926998|ref|ZP_16960003.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|423146338|ref|ZP_17133906.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|423148099|ref|ZP_17135477.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|423151885|ref|ZP_17139116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|423158508|ref|ZP_17145521.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|423162314|ref|ZP_17149186.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|423162508|ref|ZP_17149374.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|423732330|ref|ZP_17705627.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|423736965|ref|ZP_17710078.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|423900591|ref|ZP_17727949.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|423912133|ref|ZP_17728649.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|423999959|ref|ZP_17743116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|424004591|ref|ZP_17747596.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|424021751|ref|ZP_17761460.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|424028401|ref|ZP_17767998.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|424587687|ref|ZP_18027259.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|424592498|ref|ZP_18031913.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|424596361|ref|ZP_18035668.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|424603214|ref|ZP_18042348.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|424605046|ref|ZP_18044033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|424607951|ref|ZP_18046885.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|424614591|ref|ZP_18053371.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|424617076|ref|ZP_18055761.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|424620972|ref|ZP_18059501.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|424643041|ref|ZP_18080819.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|424650106|ref|ZP_18087709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|424654938|ref|ZP_18092256.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|440711204|ref|ZP_20891845.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443505134|ref|ZP_21072075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443509033|ref|ZP_21075783.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443512877|ref|ZP_21079500.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443516423|ref|ZP_21082923.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443521124|ref|ZP_21087454.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443521284|ref|ZP_21087606.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443530056|ref|ZP_21096073.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443532706|ref|ZP_21098709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443537421|ref|ZP_21103279.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|449057517|ref|ZP_21735813.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
gi|81858027|sp|Q9KNA8.1|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|340039746|gb|EGR00719.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|340044924|gb|EGR05872.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|341630144|gb|EGS55247.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|341631059|gb|EGS56000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|341631141|gb|EGS56081.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|341631864|gb|EGS56740.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|341645075|gb|EGS69231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|356421241|gb|EHH74744.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|356424231|gb|EHH77646.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|356426470|gb|EHH79778.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|356430880|gb|EHH84085.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|356434968|gb|EHH88128.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|356436434|gb|EHH89548.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|356440411|gb|EHH93352.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|356442892|gb|EHH95725.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|356446030|gb|EHH98830.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|356454850|gb|EHI07497.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|356457717|gb|EHI10224.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|356649216|gb|AET29270.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796103|gb|AFC59573.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395919246|gb|EJH30069.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|395921892|gb|EJH32711.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|395924724|gb|EJH35526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|395930735|gb|EJH41481.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|395933775|gb|EJH44514.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|395935252|gb|EJH45987.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|395938590|gb|EJH49282.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|395947636|gb|EJH58291.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|395964476|gb|EJH74693.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|395966295|gb|EJH76422.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|395969260|gb|EJH79147.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|395971527|gb|EJH81187.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|395973176|gb|EJH82746.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|395975239|gb|EJH84735.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|408009783|gb|EKG47676.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|408015828|gb|EKG53399.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|408043105|gb|EKG79126.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|408048055|gb|EKG83526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|408049864|gb|EKG85052.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|408058760|gb|EKG93545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|408613762|gb|EKK87048.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|408620829|gb|EKK93833.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|408652134|gb|EKL23366.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|408653028|gb|EKL24205.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|408664204|gb|EKL35043.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|408850645|gb|EKL90594.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|408854708|gb|EKL94456.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|408877826|gb|EKM16851.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|408880773|gb|EKM19691.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|439972691|gb|ELP48934.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443430432|gb|ELS73001.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443434270|gb|ELS80427.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443438064|gb|ELS87794.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443442174|gb|ELS95487.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443445153|gb|ELT01875.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443452607|gb|ELT12789.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443459626|gb|ELT27020.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443464052|gb|ELT35000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443467430|gb|ELT42086.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|448263228|gb|EMB00475.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
Length = 469
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|407705549|ref|YP_006829134.1| hypothetical protein MC28_2313 [Bacillus thuringiensis MC28]
gi|407383234|gb|AFU13735.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis MC28]
Length = 476
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 103/458 (22%), Positives = 181/458 (39%), Gaps = 68/458 (14%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL A VPV V F +G+ ++ ++ + +++ +
Sbjct: 8 MFQKDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAVIDVKKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIH 152
E L + +G E+ I + + + + + + + + K+ + D +
Sbjct: 62 EALGSTLI-IRKGRTEEEIRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLEDKGIICK 120
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
E ++H ++ W+ +K K N + ++ +PI K QSI +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------IIPKPISK----VQSIKGGN 170
Query: 213 IIAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 171 SLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTCKK----FFSSKLASYSEGRDFP 226
Query: 264 LKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNF 318
A S L+PYL FGQIS + L + + C + +++F+ +LI RE +
Sbjct: 227 -NQNAHSMLAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYL 284
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
++ P ++ KS + + + + T ++K +T P +A E+ G
Sbjct: 285 LYHYPF-----TVYKPLNKSFEHFPWNNEDELLTV--WQKGETGYPFIDAGMRELWQTGF 337
Query: 379 MHGFMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
MH RM + K +L W G A + D +D N +G W V
Sbjct: 338 MHNRARMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VA 385
Query: 434 DQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
G P F R N KFD +G Y++R V
Sbjct: 386 GSGADASPYF---RIFNPITQGEKFDKNG--EYIRRWV 418
>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
Length = 469
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 492
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 103/471 (21%), Positives = 184/471 (39%), Gaps = 90/471 (19%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA--------RQLGFML 83
+ W+ RD R+ DN AL +A+ ++ + V + L + R++ F+
Sbjct: 5 LVWLRRDLRLYDNAALHYALKESKQVWVTFIFDEEILKPLLKGELDAQRLKHDRRVDFIW 64
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKI 141
+GL + + + L F G+ + IP ++ G + T D+ P
Sbjct: 65 QGLEQIDEELRKQGGGLIVRF-GKPVECIPQIAKDLGVDTVFTNHDYEP----------- 112
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
+ ++ + + A + + +++ + K + N + + + W
Sbjct: 113 -SAIARDEAVKTLLAKSDIQFESFKDQVIFEKKEILTNSNTV-------FSIFTPYKNNW 164
Query: 202 TGTRQSIDWDSI--------IAAVLRKGA-EVP---EIGWCESGEDAAMEVLKGSKDGFL 249
T Q D + AA+ +K A E+P +G+C++G +A + FL
Sbjct: 165 LKTLQEKDLVAYECSAKPGQFAAIPKKLAQEIPTLESMGFCKTGIEAYLPPGAEGGQAFL 224
Query: 250 TK---RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
R+ Y R+ P + +S LS +L FG +S + EA + +L
Sbjct: 225 EDFLPRIDQYQVGRDFP-AIKGVSYLSTHLRFGMLSIRGLVREAHRRMLAGSMGATIWLS 283
Query: 307 ELIVRR----------ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
ELI R LA F +P+YD++ WE + K A+ +
Sbjct: 284 ELIWRDFYFMILANHPRLAKGASF-KPDYDNI--VWEQGSVAKKLFAA-----------W 329
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDK 411
+ +T PL +A+ ++ +G MH +RM A + ++W G EA A +LND
Sbjct: 330 CEGKTGYPLVDAAMHQLNQSGYMHNRLRMVVASFLTKDLGVDWRWG--EAY-FAEHLND- 385
Query: 412 YEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+E+ NG G W+ G +P F R N KFD +G
Sbjct: 386 FELSSN--NG--GWQWA----SSSGCDAQPYF---RIFNPITQSEKFDPEG 425
>gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
Length = 469
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|260549666|ref|ZP_05823883.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp.
RUH2624]
gi|424054723|ref|ZP_17792247.1| hypothetical protein W9I_03145 [Acinetobacter nosocomialis Ab22222]
gi|425742822|ref|ZP_18860919.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-487]
gi|260407183|gb|EEX00659.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp.
RUH2624]
gi|407439472|gb|EKF45997.1| hypothetical protein W9I_03145 [Acinetobacter nosocomialis Ab22222]
gi|425485515|gb|EKU51902.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-487]
Length = 480
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 38/248 (15%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+E L D F+ + +Y +R+ P S LSPYL+ G +S ++C +
Sbjct: 216 GESYALEQL----DQFVEDSVSHYKVERDFP-HVHGTSKLSPYLNIGILSVRQCLQALFR 270
Query: 293 AR----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
+ L E T+L+ELI RE + F ++ + + + + K + E
Sbjct: 271 NQHGNFHLDNEGQQTWLDELI-WREFYQHILF---DFPYVSKHLPFKKDTQKIKWNHNPE 326
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTTGPEEALA 403
H+ + ++ QT P+ +A +++ G MH +RM A +++W G + +
Sbjct: 327 HL---KAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFM- 382
Query: 404 IAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGY 463
++ IDG G W C G P F R N +KFD +G
Sbjct: 383 -------QHLIDGDLAANNGGWQW--CA--STGTDAVPYF---RIFNPISQSQKFDPNG- 427
Query: 464 IAYVKRIV 471
Y+++ V
Sbjct: 428 -DYIRKWV 434
>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|422306345|ref|ZP_16393526.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|408626618|gb|EKK99461.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
Length = 469
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|424668223|ref|ZP_18105248.1| hypothetical protein A1OC_01818 [Stenotrophomonas maltophilia
Ab55555]
gi|401068485|gb|EJP77009.1| hypothetical protein A1OC_01818 [Stenotrophomonas maltophilia
Ab55555]
Length = 471
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 23/161 (14%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A+E L +DG L+ Y R+ P + S LSP+LHFG+I+ R A
Sbjct: 201 QPGEAGALEALSVFEDG----ALRGYREQRDLPDR-VGTSRLSPHLHFGEIAPWRIAHAL 255
Query: 291 RKARKLCPEA-IDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHAS 344
R +A ID +L +L R+ A + + P N + + WA S
Sbjct: 256 EGLRSAGTDADIDGYLRQL-GWRDFAYHLLHHFPKTPTDNLNPRFDRFPWATP------S 308
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D + H + ++ T P+ +A E+ + G MH +RM
Sbjct: 309 DAQLHAW-----QRGNTGVPIVDAGLRELWHTGYMHNRVRM 344
>gi|242372923|ref|ZP_04818497.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
M23864:W1]
gi|242349407|gb|EES41008.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
M23864:W1]
Length = 457
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 248 FLTKRLKNYPTDRNNPLKPRAL-SGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
FL K ++NY T+R P L S LS YL +G + + + + + ++F+
Sbjct: 201 FLDKDIENYNTNR--EYLPEVLTSQLSIYLAYGVLDIIQIFNDLLENYDKDEQNYESFIR 258
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF---EKAQTAD 363
ELI R E Y P E A +S KD D + Y KE F ++ +T
Sbjct: 259 ELIFR-EFYYVLMTYYP---------ETAHQSFKDKYRD-LQWSYNKENFNLWKEGKTGF 307
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDGRD 418
P+ +A+ E+ G MH MRM ++ + ++WT G E Y K ID
Sbjct: 308 PIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTWGEE-------YFRQKL-IDYDS 359
Query: 419 PNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
+ G WS G P F R N +FD D Y+K+ V
Sbjct: 360 ASNVHGWQWSAST----GTDAVPYF---RMFNPVRQSERFDKDA--LYIKKFV 403
>gi|414167272|ref|ZP_11423501.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
gi|410891089|gb|EKS38887.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
Length = 488
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 98/247 (39%), Gaps = 38/247 (15%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE AA L FL +K Y T R+ P + S LSP+L FG+IS ++ A
Sbjct: 215 GESAAQTRLHD----FLETGIKGYATLRDRPDR-DGTSRLSPHLRFGEISPRQVWHAANF 269
Query: 293 ARKLCPEA---IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH--ASDKR 347
A P+ + FL EL R E + + F P+ A K+L+ A R
Sbjct: 270 AAAQKPDIASDVGKFLSELGWR-EFSRHLLFDLPDL---------AEKNLQSSFDAFPWR 319
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIY 407
+++ +T P+ +A E+ + G MH +RM A ++ + L I
Sbjct: 320 RDAKALRAWQRGRTGYPIVDAGMRELWHTGVMHNRVRMVVASFLV-------KHLLIDWR 372
Query: 408 LNDKYEID---GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYI 464
+K+ D DP + G G P F R N KFD DG
Sbjct: 373 HGEKWFWDTLVDADPGSNPASWQWVAG---SGADAAPYF---RVFNPVLQGEKFDPDG-- 424
Query: 465 AYVKRIV 471
AYV R V
Sbjct: 425 AYVSRWV 431
>gi|398384297|ref|ZP_10542330.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
gi|397722893|gb|EJK83422.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
Length = 458
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
++ W +S DW S A G E G +A + L YP
Sbjct: 178 LDDWPLLPRSPDWASAFHADWTPG---------EKGAEAHLSAF--------MDELDEYP 220
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
RN P + S LSP+LHFG+IS + +A A+ +A+ FL ELI R+ A N
Sbjct: 221 DARNLPSR-EGTSRLSPHLHFGEISPAQVWHQAANAQG---DAM-IFLRELIW-RDYAHN 274
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNG 377
+ P Y S + +D + K + +++ +T P+ +A ++ G
Sbjct: 275 QIWTMPTYGSENAQPAFDGMGWRDLEAAKGDFY----AWKRGRTGYPIVDAGMRQLWQTG 330
Query: 378 KMHGFMRM 385
MH +RM
Sbjct: 331 WMHNRVRM 338
>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
Length = 469
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 472
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 109/267 (40%), Gaps = 54/267 (20%)
Query: 224 VPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
VP + W +GE A E+L+ DG L+ KN R+ P + S LSP+L
Sbjct: 189 VPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKN----RDRPDR-VGTSQLSPHL 243
Query: 277 HFGQISAQR--CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLK 329
HFG+I+ R ALEA++ + E ID ++ +L R+ A + + P N +
Sbjct: 244 HFGEIAPWRIASALEAQRTARNGAE-IDGYIRQL-GWRDFAYHLLHHFPDTTNQNLNPRF 301
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK 389
++WA+ + +++ +T P+ +A ++ + G MH +RM A
Sbjct: 302 EGFDWAKVD-----------PVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVAS 350
Query: 390 KI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
+ + W G A + D +D N +G W V G P F
Sbjct: 351 FLCKHLRIHWIEG-------ARWFWDTL-VDADLANNTLGWQW----VAGTGADAAPYF- 397
Query: 445 KIRYMNYSGCKRKFDVDGYIAYVKRIV 471
R N KFD + Y+ R V
Sbjct: 398 --RVFNPVTQAEKFDP--HATYITRWV 420
>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
Length = 469
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
Length = 469
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|408823943|ref|ZP_11208833.1| deoxyribodipyrimidine photo-lyase [Pseudomonas geniculata N1]
Length = 471
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 23/161 (14%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A+E L +DG L+ Y R+ P + S LSP+LHFG+I+ R A
Sbjct: 201 QPGEAGALEALSVFEDG----ALRGYREQRDLPDR-VGTSRLSPHLHFGEIAPWRIAHAL 255
Query: 291 RKARKLCPEA-IDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHAS 344
R +A ID +L +L R+ A + + P N + + WA S
Sbjct: 256 EGLRSAGTDADIDGYLRQL-GWRDFAYHLLHHFPKTPTDNLNPRFDRFPWATP------S 308
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D + H +++ T P+ +A E+ + G MH +RM
Sbjct: 309 DAQLH-----DWQRGNTGVPIVDAGLRELWHTGYMHNRVRM 344
>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. 'Ames
Ancestor']
gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. 'Ames Ancestor']
Length = 469
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 105/459 (22%), Positives = 178/459 (38%), Gaps = 62/459 (13%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL A VPV V F +G+ ++ ++ + +++ +
Sbjct: 1 MFQKDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAIIDVKKQL 54
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTI 151
E L + +G ++ I + V + G + + + + P R K K+ +
Sbjct: 55 EALGSTLI-IRKGSTQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLE-HKGMIC 112
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD 211
E ++H ++ WV +K K N + ++ +PI K QSI
Sbjct: 113 KEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ------VIHKPISK----VQSIKGG 162
Query: 212 SIIAAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKP 266
+ + L +P I W E +G+ F + +L +Y R+ P
Sbjct: 163 NSLPVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFP-NQ 221
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + C + +++F+ +LI RE + ++
Sbjct: 222 NAHSMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLI-WREFSYYLLYH 280
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381
P A++ KS + + E + ++K T P +A E+ G MH
Sbjct: 281 YPF-----TAYKPLNKSFEHFPWNNEEELL--RVWQKGDTGYPFIDAGMRELWQTGFMHN 333
Query: 382 FMRM----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQG 436
RM + K +L W G A + D +D N +G W V G
Sbjct: 334 RTRMAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSG 381
Query: 437 WKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
P F R N KFD +G Y+++ V K
Sbjct: 382 ADASPYF---RIFNPITQGEKFDKNG--EYIRKWVPELK 415
>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 476
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 144/360 (40%), Gaps = 37/360 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAIIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI-HEVD 155
L + +G ++ I + V + G + + + + + K+ + D I E +
Sbjct: 65 GSTLI-IRKGSTQEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGMICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIHKPISK----VQSIKGGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 174 VSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFP-NQNAHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF- 290
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
A++ KS + + E + ++K T P +A E+ G MH RM
Sbjct: 291 ----TAYKPLNKSFEHFPWNNEEELL--RVWQKGDTGYPFIDAGMRELWQTGFMHNRTRM 344
>gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
Length = 505
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC------ 286
GE+AA + L D FL L++Y R+ P A S LSPYL FG IS ++
Sbjct: 220 GEEAARQRL----DAFLEHSLRDYADMRDLPAA-HATSRLSPYLRFGNISVRQVWYAASS 274
Query: 287 ----ALEARKARKLCPEA--IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLK 340
RKA P++ ++ FL E I RE + + ++ P + ++ +
Sbjct: 275 AASAMQRTRKADLGDPQSGPLNKFLSE-IGWREFSYHLLYHFPPLHQVNFRRQFDSMPWR 333
Query: 341 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
D + R +++ T PL +A E+ + G MH +RM
Sbjct: 334 DDPNALR-------KWQTGHTGYPLVDAGMRELWHTGWMHNRVRM 371
>gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 484
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 109/267 (40%), Gaps = 54/267 (20%)
Query: 224 VPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
VP + W +GE A E+L+ DG L+ KN R+ P + S LSP+L
Sbjct: 201 VPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKN----RDRPDR-VGTSQLSPHL 255
Query: 277 HFGQISAQR--CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLK 329
HFG+I+ R ALEA++ + E ID ++ +L R+ A + + P N +
Sbjct: 256 HFGEIAPWRIASALEAQRTARNGAE-IDGYIRQL-GWRDFAYHLLHHFPDTTNQNLNPRF 313
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK 389
++WA+ + +++ +T P+ +A ++ + G MH +RM A
Sbjct: 314 EGFDWAKVD-----------PVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVAS 362
Query: 390 KI-----LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFG 444
+ + W G A + D +D N +G W V G P F
Sbjct: 363 FLCKHLRIHWIEG-------ARWFWDTL-VDADLANNTLGWQW----VAGTGADAAPYF- 409
Query: 445 KIRYMNYSGCKRKFDVDGYIAYVKRIV 471
R N KFD + Y+ R V
Sbjct: 410 --RVFNPVTQAEKFDP--HATYITRWV 432
>gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49725]
gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49725]
Length = 445
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 144/375 (38%), Gaps = 57/375 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQA-NKNNVPVAVAFNLFDQFLGAKARQLG-----FMLRG 85
+ W D R+ DN AL A + A +KN + + D+ R LG + R
Sbjct: 4 LMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRERS 63
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD---FSPLREI-RRCKDKI 141
L L + + + + G+A IP E GA + + PLRE+ R K +
Sbjct: 64 LHALAQELA-SRGVKLLRATGDARTVIPRIAHEVGADTVTWNRRYHGPLREVDARVKATL 122
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR----GKINKLLPEYLIDYPMLEQP 197
+ ++++ +V W + K ++L E + P L
Sbjct: 123 ADAGINAIS---CPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELLAG 179
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
E G S W + A+ P+ W S G+++ L +Y
Sbjct: 180 RE--MGASASSSWPN-------PSADEPQ--WAASLAQYWTPGEAGARERLAQLDLAHYA 228
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+R+ P + A S LSP+L FG++S + + A + P+A + F EL+ R + A +
Sbjct: 229 EERDIPAR-NATSLLSPHLRFGEVSPREVWVAAAEE----PDA-EKFQSELLWR-DFAWH 281
Query: 318 FCFYQPNYDSL-------KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQ 370
++ P+ + + W W LKD +++ T PL +A
Sbjct: 282 RLYHLPDLATRNVRQKFNRFDWSWNDPRLKD--------------WQEGTTGIPLVDAGM 327
Query: 371 MEMVYNGKMHGFMRM 385
E+ + G MH +RM
Sbjct: 328 RELWHTGYMHNRVRM 342
>gi|357974946|ref|ZP_09138917.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. KC8]
Length = 456
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS-AQRCALEAR 291
GE+ A + L+ FL + +Y T RN P S LSP+LHFG+IS A A+
Sbjct: 199 GEEGAKDALRN----FLPN-ITDYDTARNLP-SIAGSSRLSPHLHFGEISPATVWHHAAK 252
Query: 292 KARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIY 351
+AR + FL E + R+ A N P+Y G W +D +D
Sbjct: 253 RARGEA----EPFLRE-VGWRDFAANVIDILPDYGRRNGREAWDDFPWRDAEAD------ 301
Query: 352 TKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ K +T P+ +A E+ G MH +RM
Sbjct: 302 -FAAWTKGRTGYPIVDAGMRELWATGWMHNRVRM 334
>gi|187927713|ref|YP_001898200.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
Length = 518
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 88/227 (38%), Gaps = 47/227 (20%)
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI-- 309
R+ +Y R+ P R S LS +L FG +S + A A A T+L EL+
Sbjct: 242 RMDDYHARRDFPAV-RGPSYLSTHLRFGTVSIRTLAARAHAAMLRGSRGAATWLSELVWR 300
Query: 310 --------VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
R +LAD F+ P +D ++ W D E ++ AQT
Sbjct: 301 DFYFMILHHRPDLADGAAFH-PEFDRIR----WVDGDTGD---------ARFEAWKGAQT 346
Query: 362 ADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEIDG 416
PL +A+ +++ +G MH +RM A + ++W G + A LND D
Sbjct: 347 GYPLVDAAMLQIFQSGYMHNRLRMVAASFLIKDLGIDWRRGEQY---FADVLND---FDF 400
Query: 417 RDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
NG G W+ G Q W R N KFD G
Sbjct: 401 SANNG--GWQWAASSGCDAQPW--------FRIFNPVTQSEKFDPQG 437
>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|417818812|ref|ZP_12465432.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|421349744|ref|ZP_15800113.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|423938868|ref|ZP_17732353.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|423968686|ref|ZP_17735903.1| DNA photolyase family protein [Vibrio cholerae HE-46]
gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|340043526|gb|EGR04484.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|395956361|gb|EJH66955.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|408664649|gb|EKL35479.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|408667250|gb|EKL38000.1| DNA photolyase family protein [Vibrio cholerae HE-46]
Length = 469
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 497
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 154/386 (39%), Gaps = 57/386 (14%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ D R+ DN AL A N + V +A + RQ F+L L +Q
Sbjct: 14 LVWLRNDLRITDNLALSAACQDPNATVLAVFIATPAQWEKHDMAPRQAAFLLENLTSVQH 73
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-EI-RRCKDK-ICNRVSDS 148
+ E L + + ++ V+ C F + EI R +DK + +R++DS
Sbjct: 74 ALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLADS 133
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-------LIDYPMLEQPIEKW 201
V H ++P S T G++ K+ + L++ P
Sbjct: 134 VVCHGYHDSLLLP--------PGSVLTGNGEMYKVFTPFRQAFIKRLLEAETTCVPAPDA 185
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
G + I +A EV + GE AA++ L+ F +++++Y R+
Sbjct: 186 RG--EPIHNMMALAPFSYPQREVDSDDF-PCGERAALQQLRR----FCREQVQDYDRQRD 238
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR--- 311
P P S LSPYL G +S ++C + R CP+ ++ T+ EL+ R
Sbjct: 239 VPALP-GTSKLSPYLALGIVSPRQC---FNRLRAECPDMLERREGGAFTWFNELVWREFY 294
Query: 312 RELA---DNFCFYQPNYDSLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWN 367
R L C ++P AW +W + RE +++ +T P+ +
Sbjct: 295 RHLIVSWPQLCKHRP-----FTAWTQWVK---------WRESSEDLTAWQQGKTGYPIVD 340
Query: 368 ASQMEMVYNGKMHGFMRMYWAKKILE 393
A+ ++ G MH +RM A +++
Sbjct: 341 AAMRQLNGTGWMHNRLRMICASFLVK 366
>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
Length = 469
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
33641]
gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
33641]
Length = 481
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 44/250 (17%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE+AA++ L+ F +++++Y R+ P A S LSPYL G +S ++C
Sbjct: 206 AGEEAALQRLRT----FCREQVQDYQQQRDFPAI-AATSCLSPYLALGILSPRQC---VN 257
Query: 292 KARKLCPEAIDT-------FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHAS 344
+ R CPE ++ +L ELI RE + P + W + +H+
Sbjct: 258 RLRAECPEVLENADGGAFIWLNELIW-REFYRHLLVAYPRLCQHRPFIGWTDAVVWNHSQ 316
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTGPE 399
+ +++ QT P+ +A+ ++ G MH +RM A +++W G
Sbjct: 317 QQ------LIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDLLIDWRQGER 370
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
+++ + D NG G W+ D P F R N + +FD
Sbjct: 371 ------YFMSQLLDGDLAANNG--GWQWAASTGTDAA----PYF---RIFNPTTQGERFD 415
Query: 460 VDGYIAYVKR 469
DG +++R
Sbjct: 416 KDG--VFIRR 423
>gi|392554726|ref|ZP_10301863.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas undina NCIMB
2128]
Length = 464
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 97/454 (21%), Positives = 176/454 (38%), Gaps = 71/454 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL--GAKARQLGFMLRGLRLL 89
++W RD R+ N ALI A++ K+ A+ F Q+ A Q+ + R + +
Sbjct: 4 LFWFRRDLRLFSNEALIEALNNGAKH----AIFFVCEKQWAQHNTAAIQIDLLKRRVSYI 59
Query: 90 QRNIEE---TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS-PLREIRRCK--DKICN 143
+ + + ++ F + + + +F ++ ++ + L E R K C+
Sbjct: 60 REKLAKYGVNLHVIDAPFFADCQTKLLDFCQQHDIKHIIANTEYELNEFNRDKAIQAQCD 119
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY------LIDYPMLEQP 197
+ + T++E D + PV + K L +Y L+ +P+ E+P
Sbjct: 120 QQQITFTLYEGDI--IAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLLQWPISEEP 177
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
IE I L G E I W + + V D F+ +L +Y
Sbjct: 178 IE-------------IEQCELLSGDE-SSIKWPVDDDTLSTVV-----DNFIHDKLASYD 218
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK--LCPEAIDTF--LEELIVRRE 313
R+ P + SGLSPYL G +S+++ + ++ L TF + ELI R
Sbjct: 219 DVRDIP-SVKGTSGLSPYLALGVVSSKQLMVNIQQHYPDILTTSKSKTFTWVNELIWRE- 276
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
FY+ A + K + R+ +Q+ + +T PL +A+ ++
Sbjct: 277 ------FYKHLIAEFPKLSRGANFNEKYDSVSWRDSDAEFKQWCEGRTGYPLVDAAMQQL 330
Query: 374 VYNGKMHGFMRMYWAK-----KILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
+ G MH +RM A +++W G + + ++ IDG + G W+
Sbjct: 331 LQTGWMHNRLRMVVASFLTKHLLIDWRKGEQFFM--------QHLIDGDLASNNGGWQWA 382
Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
G +P F R N +FD +G
Sbjct: 383 AST----GCDAQPYF---RVFNPITQSERFDPNG 409
>gi|440229885|ref|YP_007343678.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
gi|440051590|gb|AGB81493.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
Length = 476
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 84/397 (21%), Positives = 156/397 (39%), Gaps = 66/397 (16%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGL----- 86
+ W+ D R+ DN AL A V + +A + RQ F+ L
Sbjct: 5 LVWLRNDLRITDNKALYAACRDPQAQVVALFIATPQQWRRHEMAPRQAAFIYANLLQLRS 64
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
+L QR I Q A + ++ R G L + RR ++ + ++
Sbjct: 65 QLAQRGIPLVVQQCDDF--AAAARWLTDYCRATGVDALFYNRQYELNERRRDRQVESALA 122
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
+++T H D ++P S +T G++ Y + P + +++
Sbjct: 123 ETLTCHAFDDALLLP--------PGSVQTGSGEM------YQVFTPFRKAFLQRLL---- 164
Query: 207 SIDWDSIIAAVLRKGAEV-----------PEIGWCES---GEDAAMEVLKGSKDGFLTKR 252
S+D S+ A +R G + P+ W + GE+ A+ L+ F ++
Sbjct: 165 SVDVHSLPAPSVRAGGAIAEPAAPEPFAYPDAEWDAAFPPGEEHALRRLRA----FCREQ 220
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFL 305
+++Y R+ P A SGLSPYL G +S ++C + R CP+ + T+L
Sbjct: 221 VEDYRQQRDFPAL-DATSGLSPYLALGVLSPRQCF---NRLRLTCPDLLTQPESGAFTWL 276
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
ELI R E + P + W + ++ + +++ +T P+
Sbjct: 277 NELIWR-EFYRHLLVAHPALCRHRPFIGWTDAVRWNPDAE------ALQAWQQGRTGYPI 329
Query: 366 WNASQMEMVYNGKMHGFMRMYWAK-----KILEWTTG 397
+A+ ++ + G MH +RM A +++W G
Sbjct: 330 VDAAMRQLNHTGWMHNRLRMIVASFLVKDLLIDWRAG 366
>gi|399543907|ref|YP_006557215.1| deoxyribodipyrimidine photo-lyase [Marinobacter sp. BSs20148]
gi|399159239|gb|AFP29802.1| Deoxyribodipyrimidine photo-lyase [Marinobacter sp. BSs20148]
Length = 488
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 42/246 (17%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE+A + L+ FL +R+ +Y DR+ P + S LSPYL G +S ++C A
Sbjct: 216 TGENAGHDALQN----FLQERVGDYKKDRDFP-AIKGTSKLSPYLAIGALSGRQCVQAAW 270
Query: 292 KARKLC----------PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
+ ++ E T++ EL R+ + ++ P S+ A++ ++L
Sbjct: 271 QLKQSMGGSFGTATNNEEGFFTWVTEL-AWRDFYIHILYHCPRV-SMHRAFKPETEALHW 328
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA-----KKILEWTT 396
+ +D EH E ++ +T P+ +A+ ++ G MH +RM A ++W
Sbjct: 329 NTAD--EHF---EAWKNGRTGIPMVDAAMRQLNATGWMHNRLRMVAAMFLTKNLFIDWRR 383
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKR 456
G Y K DG + G WS G P F R N
Sbjct: 384 G-------EAYFMSKL-ADGYLASNNGGWQWSAS----TGTDSSPYF---RVFNPMTQGE 428
Query: 457 KFDVDG 462
+FD DG
Sbjct: 429 RFDTDG 434
>gi|365866676|ref|ZP_09406283.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
gi|364003865|gb|EHM24998.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
Length = 451
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 99/249 (39%), Gaps = 41/249 (16%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G GEDA +++ +L + +Y D ++ L A S LSP+LHFG +SA
Sbjct: 191 GLARGGEDAGRKLVTA----WLNGPMADY-EDGHDDLAGDATSRLSPHLHFGTVSAAELV 245
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
AR+ EA F+ R+LA +Q D +W R SD+
Sbjct: 246 HRAREKGGSGGEA---FV------RQLAWRDFHHQVLADRPDASWSDYRPRHDRWRSDED 296
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEAL 402
E + + +T PL +A+ ++ + G MH RM A + ++W G L
Sbjct: 297 E----IDAWRTGRTGYPLVDAAMRQLAHEGWMHNRGRMLAASFLTKTLYVDWRVGARHFL 352
Query: 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG 462
+ +DG N + W V G RP R +N ++FD G
Sbjct: 353 DLL--------VDGDVANNQLNWQW----VAGTGTDTRP----NRVLNPVIQGKRFDPRG 396
Query: 463 YIAYVKRIV 471
YV+R V
Sbjct: 397 --DYVRRWV 403
>gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 484
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 32/176 (18%)
Query: 224 VPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
VP + W + GE A E+L+ DG L+ Y +R+ P + S LSP+L
Sbjct: 201 VPSLNWDQGFWEHGQPGEAGAHEMLEIFIDGALS----GYRENRDRPDR-VGTSQLSPHL 255
Query: 277 HFGQISAQRCA--LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLK 329
HFG+I+ R A LEAR+ + E ID ++ +L R+ A + + P N +
Sbjct: 256 HFGEIAPWRIASTLEARRTARNGAE-IDGYIRQL-GWRDFAYHLLHHFPDTTNQNLNPRF 313
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
++W + + +++ +T P+ +A ++ + G MH +RM
Sbjct: 314 EGFDWTKVD-----------PVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358
>gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
Length = 493
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 111/477 (23%), Positives = 182/477 (38%), Gaps = 87/477 (18%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFM---LRG 85
+ W+ RD R+ D+ AL HA+ Q + V F D L R++ F+ L G
Sbjct: 9 LVWLRRDLRLADHAALYHALRQCRQ----VHCVFIFDDDILAPLPCADRRVEFICQSLSG 64
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF----SPLREIRRCKDKI 141
L R + +G+ + IP+ R+ GA + ++ L R + +
Sbjct: 65 LDDALRQASGRADTGLIVRRGQPAEQIPDLARQLGAQAVFCNWDDEPDALARDTRVRQAL 124
Query: 142 CNRVSDSVTIHEVDAHNVVP----VWVASEKLEYSAKTLRGKINKLLPEYLIDYP----M 193
++ V +H H V + A + ++ P +L YP +
Sbjct: 125 A---AEGVALHSFKDHMVFARDEVLTQAGAPFSVFTPYKNAWLRQITPFFLSAYPSERDL 181
Query: 194 LEQPIEKWTGTRQSIDW--DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
E+ + G R+ + D A G +P C E+ + L
Sbjct: 182 PERLAPRPEGERRPVPTAADLGFEAGTLDGLRLPT--GCAGAEELLADFL---------P 230
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEEL 308
RL Y R+ P + S LS +L FG +S +R A A + + P E T+L EL
Sbjct: 231 RLPRYKQARDFPAV-KGPSYLSVHLRFGTVSIRRLARLAWEQTQSQPHDAEGAATWLSEL 289
Query: 309 IVR----RELADN----FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
I R + LA + ++P YD++ W+ ++ +A+ + + +
Sbjct: 290 IWRDFYFQILAHHPHVVHASFKPAYDAI--VWDTGPEADALYAA-----------WCEGR 336
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTTGPEEALAIAIYLNDKYEID 415
T PL +A+ ++ G MH +RM A + ++W G EA A LND D
Sbjct: 337 TGYPLVDAAMRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRG--EAW-FARQLND---FD 390
Query: 416 GRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
NG G W+ G Q W R N +KFD D +++R V
Sbjct: 391 LAANNG--GWQWAASTGCDAQPW--------FRIFNPVTQSQKFDADAR--FIERYV 435
>gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
M045]
gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
M045]
Length = 468
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 41/222 (18%)
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL----IVRREL 314
DR++ L A S LSP+LHFG +S R+A L + F+ +L R+ L
Sbjct: 232 DRHDDLAGDATSRLSPHLHFGTLSPVEV---VREAGGLGGPGAEAFVRQLAWRDFHRQVL 288
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
A +Y + W R + RE + + + + +T P+ +A+ ++
Sbjct: 289 AARPAAAHEDYRTRHDRWRTERAA--------REEV---QAWREGRTGYPVVDAAMRQLR 337
Query: 375 YNGKMHGFMRM----YWAKKI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
+ G MH R+ + AK + ++W G L + +DG N + W
Sbjct: 338 HEGWMHNRGRLLTASFLAKTLYVDWRVGARHFLDLL--------VDGDLANNQMNWQW-- 387
Query: 430 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIV 471
V G RP R +N R+FD +G AYV+R V
Sbjct: 388 --VAGTGTDSRP----NRVLNPVVQGRRFDPEG--AYVRRWV 421
>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
A2012]
gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CDC 684]
gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A1055]
gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Kruger B]
gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Vollum]
gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Australia 94]
gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase [Bacillus anthracis str. Ames]
gi|386736907|ref|YP_006210088.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|421510721|ref|ZP_15957609.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|421636758|ref|ZP_16077356.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
gi|384386759|gb|AFH84420.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|401819244|gb|EJT18426.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|403395554|gb|EJY92792.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
Length = 476
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 103/456 (22%), Positives = 176/456 (38%), Gaps = 61/456 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASK--WWLHHAIIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + V + G + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGSTQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLE-HKGMICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ WV +K K N + ++ +PI K QSI + +
Sbjct: 123 NSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ------VIHKPISK----VQSIKGGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRAL 269
L +P I W E +G+ F + +L +Y R+ P A
Sbjct: 173 PVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFP-NQNAH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
A++ KS + + E + ++K T P +A E+ G MH R
Sbjct: 291 -----TAYKPLNKSFEHFPWNNEEELL--RVWQKGDTGYPFIDAGMRELWQTGFMHNRTR 343
Query: 385 M----YWAKKIL-EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKE 439
M + K +L W G A + D +D N +G W V G
Sbjct: 344 MAVASFLVKHLLIPWQEG-------AKWFMDTL-LDADIANNTMGWQW----VAGSGADA 391
Query: 440 RPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTK 475
P F R N KFD +G Y+++ V K
Sbjct: 392 SPYF---RIFNPITQGEKFDKNG--EYIRKWVPELK 422
>gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
Length = 472
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 100/243 (41%), Gaps = 42/243 (17%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS---AQRCAL 288
+GEDAA E L+ DG + Y R+ P P A S LSPYL G +S A R AL
Sbjct: 205 AGEDAASERLEAFADGVIDA----YQEQRDFPSLP-ATSCLSPYLAAGVLSPGQALRAAL 259
Query: 289 EARKAR-KLCPEAIDTFLEELIVRRELADNFCFYQPN---YDSLKGAWEWARKSLKDHAS 344
A T++ EL+ R E + P+ + +K E A +D
Sbjct: 260 AANHGEVDGGKRGAATWINELLWR-EFYQHLLAAHPSLSMHQPMKP--ETAAVPWRDAPD 316
Query: 345 DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR----MYWAKKIL-EWTTGPE 399
D R +++ QT P+ +A+ +++ G MH +R M+ +K +L +W G
Sbjct: 317 DLRA-------WQQGQTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNLLIDWRLG-- 367
Query: 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 459
EA +A +DG G WS G P F R N RKFD
Sbjct: 368 EAWFMAQL------VDGDLAANNGGWQWSAS----TGADAVPYF---RIFNPLSQSRKFD 414
Query: 460 VDG 462
DG
Sbjct: 415 PDG 417
>gi|219117169|ref|XP_002179379.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409270|gb|EEC49202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 585
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D FL K L Y +DR+ A S LS YL G IS + + L PEA TF
Sbjct: 251 DHFLIKGLPLYESDRSRADMEYATSQLSVYLRIGIISPRELYWRIEDS-SLSPEAKKTFA 309
Query: 306 EELIVRRELA--DNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
LI RELA FCF + S++ +E + D + +++ T
Sbjct: 310 RRLIW-RELAYYQLFCFPKMRDRSIRKHYEASEWVTGDEEKGRF------NAWKRGLTGY 362
Query: 364 PLWNASQMEMVYNGKMHGFMRMYWAKKILE-----WTTGPE 399
PL +A E+ G + +RM A ++E WT G E
Sbjct: 363 PLVDAGMRELYTTGYLTQSVRMVVASFLVEYLRVDWTKGAE 403
>gi|346724379|ref|YP_004851048.1| photolyase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346649126|gb|AEO41750.1| photolyase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 475
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 48/255 (18%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR--ALSGLSPYLHFGQISAQRCA- 287
+ GE A E+L+ DG L+ Y +R+ P +P S LSP+LHFG+I+ R A
Sbjct: 203 QPGEAGAHEMLEIFIDGALS----GYRENRDRPDRPDRVGTSQLSPHLHFGEIAPWRIAS 258
Query: 288 -LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKD 341
LE + + E ID ++ +L R+ A + + P N + ++WA
Sbjct: 259 TLETHRTARNGAE-IDAYIRQL-GWRDFAYHLLHHFPDTTNQNLNPRFAGFDWATVD--- 313
Query: 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEWTT 396
+ +++ +T P+ +A ++ + G MH +RM A + + W
Sbjct: 314 --------PVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLCKHLRIHWIE 365
Query: 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKR 456
G A + D +D N +G W V G P F R N
Sbjct: 366 G-------ARWFWDTL-VDADLANNTLGWQW----VAGTGADAAPYF---RVFNPVTQAE 410
Query: 457 KFDVDGYIAYVKRIV 471
KFD + Y+ R V
Sbjct: 411 KFDP--HATYITRWV 423
>gi|448734435|ref|ZP_21716661.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
gi|445800483|gb|EMA50838.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
Length = 479
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 144/371 (38%), Gaps = 45/371 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL----GAKARQLGFMLRGL 86
V W D R DN AL+ AVD+ + FD+ + + F++ +
Sbjct: 5 AVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFDETMFDLPKTGPYRARFLVDSV 64
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
R L+R++ + L + QG+ E+ +P E GA ++ +P E R I N V+
Sbjct: 65 RDLRRSLRQAGGDL-LVRQGKTENVVPQLAAEHGADIVHYHTTPATEER----AIENGVT 119
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
D + H +D+ + W K Y + L ++ ++ + Q +E R
Sbjct: 120 DGLDEHGIDSRD---FW---GKTLYHVEDLPTRVERIDDTFT----PWRQTVEDGATVRD 169
Query: 207 SIDWDSIIAAVLRKGAE---VPEIGWC-----ESGEDAAMEVLKGSKDGF--LTK----- 251
+D + I G E +P G E + AA+E + G G LT+
Sbjct: 170 PLDAPTSIVLPESAGDEPGTIPTPGDLGIEEREPDDRAAIEFVGGESAGLRRLTEYVWEG 229
Query: 252 -RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEAIDTFLEEL 308
L+ Y RN L S S +L G +S + +E + ++ ++ + EL
Sbjct: 230 DHLREYKETRNGLLGADYSSKFSAWLAVGCLSPRLIHEHVERYERERVANDSTYWLVFEL 289
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
+ R + F + ++ + G ++D + R E++ T P +A
Sbjct: 290 LWRDFMTFQFEKHGADFFTSTG--------IRDVTKEWRHDETAFERWAAGDTGVPFVDA 341
Query: 369 SQMEMVYNGKM 379
+ E+ G M
Sbjct: 342 NMRELNETGFM 352
>gi|238612106|ref|XP_002398132.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
gi|215474046|gb|EEB99062.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
Length = 228
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 13 PGRIRVLKQGSLDKKRGP-VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
P ++ +K G + +G VVYWM D R+ DN AL A QA + N+P+ V F + Q
Sbjct: 18 PKLLQAVKDGVKNPNKGECVVYWMRMADLRISDNRALSLASAQAKEENIPLVVIFVISPQ 77
Query: 71 FLGAK---ARQLGFMLRGL 86
A AR++ F LR L
Sbjct: 78 DYIAHDRGARRIDFTLRNL 96
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,102,140,646
Number of Sequences: 23463169
Number of extensions: 348067572
Number of successful extensions: 693135
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 996
Number of HSP's that attempted gapping in prelim test: 690434
Number of HSP's gapped (non-prelim): 1901
length of query: 492
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 345
effective length of database: 8,910,109,524
effective search space: 3073987785780
effective search space used: 3073987785780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)