Query 011155
Match_columns 492
No_of_seqs 140 out of 1278
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umv_A Deoxyribodipyrimidine p 100.0 3E-112 9E-117 902.3 32.9 471 9-483 19-498 (506)
2 2xry_A Deoxyribodipyrimidine p 100.0 2E-103 8E-108 835.9 28.9 454 4-469 14-481 (482)
3 3fy4_A 6-4 photolyase; DNA rep 100.0 5.7E-99 2E-103 804.6 22.9 422 27-485 3-459 (537)
4 3tvs_A Cryptochrome-1; circadi 100.0 1.1E-97 4E-102 796.4 21.4 424 28-484 3-473 (538)
5 1dnp_A DNA photolyase; DNA rep 100.0 4.2E-97 1E-101 783.3 23.5 414 30-484 2-435 (471)
6 1owl_A Photolyase, deoxyribodi 100.0 8.4E-97 3E-101 784.6 25.2 408 28-484 2-442 (484)
7 1u3d_A Cryptochrome 1 apoprote 100.0 3.7E-95 1.3E-99 776.9 25.7 413 27-485 10-454 (509)
8 2e0i_A 432AA long hypothetical 100.0 1.4E-95 5E-100 763.9 20.2 380 31-484 3-401 (440)
9 1np7_A DNA photolyase; protein 100.0 8.7E-95 3E-99 770.8 25.7 412 29-485 6-449 (489)
10 2wq7_A RE11660P; lyase-DNA com 100.0 3.2E-94 1.1E-98 773.7 28.8 423 30-485 30-483 (543)
11 2j07_A Deoxyribodipyrimidine p 100.0 1.6E-93 5.4E-98 746.3 25.1 386 30-475 3-395 (420)
12 2j4d_A Cryptochrome 3, cryptoc 100.0 1.1E-93 3.7E-98 766.7 24.3 411 28-484 39-484 (525)
13 3zxs_A Cryptochrome B, rscryb; 100.0 2E-61 6.8E-66 506.1 19.1 391 30-491 16-464 (522)
14 3s3t_A Nucleotide-binding prot 92.7 0.71 2.4E-05 38.9 9.9 88 38-126 13-114 (146)
15 3dlo_A Universal stress protei 92.4 0.89 3.1E-05 39.2 10.3 87 38-126 32-123 (155)
16 3fdx_A Putative filament prote 91.8 1.2 4.2E-05 37.1 10.3 83 43-126 16-112 (143)
17 3fg9_A Protein of universal st 91.7 1.2 4.1E-05 38.1 10.3 84 42-126 29-125 (156)
18 3tnj_A Universal stress protei 91.4 1 3.6E-05 38.0 9.5 89 38-127 14-116 (150)
19 2dum_A Hypothetical protein PH 90.5 1.2 4.2E-05 38.5 9.3 85 42-127 17-124 (170)
20 3hgm_A Universal stress protei 90.3 1.6 5.6E-05 36.5 9.7 85 42-127 14-117 (147)
21 3idf_A USP-like protein; unive 87.8 3.7 0.00013 33.9 10.0 83 42-127 13-108 (138)
22 1mjh_A Protein (ATP-binding do 87.6 2.5 8.5E-05 36.1 9.0 84 42-126 17-126 (162)
23 1tq8_A Hypothetical protein RV 87.3 1.2 4.1E-05 38.7 6.8 88 38-127 25-126 (163)
24 2z08_A Universal stress protei 84.0 6.1 0.00021 32.5 9.5 83 43-126 15-105 (137)
25 3olq_A Universal stress protei 82.8 22 0.00076 33.7 14.3 111 44-155 177-304 (319)
26 3mt0_A Uncharacterized protein 80.2 8.2 0.00028 36.5 9.9 82 44-126 155-243 (290)
27 3loq_A Universal stress protei 79.7 11 0.00036 35.7 10.5 78 38-126 178-257 (294)
28 1q77_A Hypothetical protein AQ 76.4 13 0.00044 30.4 9.0 88 38-127 12-116 (138)
29 1jmv_A USPA, universal stress 75.2 3.7 0.00013 34.0 5.2 114 38-154 10-136 (141)
30 2gm3_A Unknown protein; AT3G01 73.9 19 0.00067 30.8 9.8 82 44-126 28-130 (175)
31 3mt0_A Uncharacterized protein 70.9 12 0.00042 35.2 8.4 79 38-127 15-96 (290)
32 3olq_A Universal stress protei 67.7 39 0.0013 31.9 11.3 88 38-126 15-117 (319)
33 3rjz_A N-type ATP pyrophosphat 61.7 16 0.00055 34.1 6.8 91 55-153 25-121 (237)
34 3cis_A Uncharacterized protein 61.6 11 0.00038 35.9 6.0 86 38-126 179-273 (309)
35 3loq_A Universal stress protei 61.5 13 0.00046 35.0 6.5 87 38-127 30-130 (294)
36 3ab8_A Putative uncharacterize 59.5 21 0.00071 33.0 7.3 83 42-127 12-116 (268)
37 3cis_A Uncharacterized protein 51.8 48 0.0016 31.3 8.7 82 42-126 31-128 (309)
38 1b43_A Protein (FEN-1); nuclea 39.5 82 0.0028 30.7 8.2 43 84-127 130-172 (340)
39 3ab8_A Putative uncharacterize 38.7 45 0.0015 30.6 6.0 77 38-126 162-240 (268)
40 3fvv_A Uncharacterized protein 36.2 40 0.0014 29.8 5.1 43 83-126 94-136 (232)
41 3h75_A Periplasmic sugar-bindi 34.4 1.8E+02 0.006 27.6 9.8 71 81-156 18-94 (350)
42 3q8k_A Flap endonuclease 1; he 33.9 89 0.003 30.6 7.4 43 83-126 134-176 (341)
43 3ory_A Flap endonuclease 1; hy 33.6 82 0.0028 31.2 7.1 40 86-126 146-185 (363)
44 3u80_A 3-dehydroquinate dehydr 29.3 1.9E+02 0.0064 24.8 7.6 77 84-162 29-113 (151)
45 3dx5_A Uncharacterized protein 29.2 1.7E+02 0.0058 26.8 8.4 75 49-124 88-167 (286)
46 2l82_A Designed protein OR32; 28.1 1.9E+02 0.0065 23.2 6.9 52 102-155 5-59 (162)
47 3cqj_A L-ribulose-5-phosphate 27.2 2E+02 0.0067 26.6 8.5 79 47-126 110-193 (295)
48 3n07_A 3-deoxy-D-manno-octulos 26.2 1.6E+02 0.0054 25.8 7.2 39 91-130 62-100 (195)
49 3qk7_A Transcriptional regulat 26.1 2.1E+02 0.0072 26.2 8.5 89 59-157 6-97 (294)
50 3ixr_A Bacterioferritin comigr 25.7 1.3E+02 0.0046 25.6 6.5 42 83-125 71-112 (179)
51 3uhf_A Glutamate racemase; str 25.5 1.2E+02 0.0039 28.8 6.3 62 63-125 52-115 (274)
52 3n1u_A Hydrolase, HAD superfam 25.1 1.9E+02 0.0067 24.9 7.5 42 90-132 55-96 (191)
53 3mn1_A Probable YRBI family ph 24.6 71 0.0024 27.8 4.5 39 89-128 54-92 (189)
54 3mmz_A Putative HAD family hyd 24.4 2.1E+02 0.0071 24.3 7.5 40 89-130 47-86 (176)
55 3e8m_A Acylneuraminate cytidyl 24.0 1.9E+02 0.0066 23.8 7.1 43 89-132 39-81 (164)
56 2drn_C 24-residues peptide fro 23.9 35 0.0012 19.8 1.4 16 363-378 8-23 (26)
57 3out_A Glutamate racemase; str 22.6 1.7E+02 0.0059 27.4 6.9 62 63-125 35-99 (268)
58 3ij5_A 3-deoxy-D-manno-octulos 22.6 80 0.0027 28.3 4.4 40 89-129 84-123 (211)
59 1exn_A 5'-exonuclease, 5'-nucl 21.2 3.3E+02 0.011 25.9 8.6 47 80-127 97-150 (290)
60 3rfu_A Copper efflux ATPase; a 20.6 1E+02 0.0035 33.5 5.5 41 91-132 564-604 (736)
61 3kip_A 3-dehydroquinase, type 20.3 2.4E+02 0.0083 24.5 6.6 61 96-162 56-123 (167)
62 3gkn_A Bacterioferritin comigr 20.1 1.4E+02 0.005 24.5 5.4 43 83-126 55-97 (163)
No 1
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=2.7e-112 Score=902.30 Aligned_cols=471 Identities=64% Similarity=1.157 Sum_probs=404.5
Q ss_pred CccccccccccccCcCCCCCCcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCC--ccccchhHHHHHHHHH
Q 011155 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGL 86 (492)
Q Consensus 9 ~~~~~~r~~~~~~~~~~~~~~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~--~~~~~~~r~~Fl~esL 86 (492)
..++++|||++|+.+ .+.++.+||||||||||+||+||++|++.|.+.+.+|+||||+||. +...+.+|++||++||
T Consensus 19 ~~~~~~r~~~l~~~~-~~~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL 97 (506)
T 3umv_A 19 SPAHPSRVRVIHPGG-GKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGL 97 (506)
T ss_dssp CCSCGGGEEEEECCC-SCTTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHH
T ss_pred cccCHhHhhhhccCC-CCCCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHH
Confidence 458999999999986 5567889999999999999999999998877667899999999998 4577899999999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHh---cCCCeEEEEeCceeEeCc
Q 011155 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV---SDSVTIHEVDAHNVVPVW 163 (492)
Q Consensus 87 ~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l---~~~v~~~~~~~~~l~~~~ 163 (492)
++|+++| +++|++|+|+.|++.++ ++|+++++|++|++|++|...+++||++|+++| +.||.++++++++|++++
T Consensus 98 ~dL~~~L-~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~ 175 (506)
T 3umv_A 98 RRLAADA-AARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVW 175 (506)
T ss_dssp HHHHHHH-HHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHH
T ss_pred HHHHHHH-HHcCCceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcc
Confidence 9999999 99999999999999999 999999999999999999998888999999987 479999999999999999
Q ss_pred ccccCCCCccccchHHHHhhCCccccCCCCCcCCCCcCCC-CCCCCChhHHHHHHhhcCCCCCCcCcCCCcHHHHHHHHc
Q 011155 164 VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242 (492)
Q Consensus 164 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~ 242 (492)
.+.++.+|.++||++++.+.+..++.+.|.. +...+... .+..+++..+.+.+...+..++...+++|||++|+++|+
T Consensus 176 ~v~~~~~~~~~t~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~ 254 (506)
T 3umv_A 176 TASAKMEYSAKTFRGKVSKVMDEYLVEFPEL-PAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALL 254 (506)
T ss_dssp HHCSSCCSSHHHHHHHHHTTHHHHSCCCCCC-CCCCCCCSCCCCCCCHHHHHHHHHHTSCCCCCCCSSCCSHHHHHHHHH
T ss_pred cccCCCCCCccCHHHHHHHhccccccCCCCC-CCccccccccccccChhhhhhhhccccccccccCCCCCCHHHHHHHHH
Confidence 8878888999999988887766555554442 11111111 122345544433221233344433457899999999998
Q ss_pred cchhHHHHhhhcCCCCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHhhhCCccHHHHHHHhHhHHHHHHHHHHhC
Q 011155 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322 (492)
Q Consensus 243 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~ 322 (492)
|++++|+++++.+|+.+||.|+..++||+|||||+||+||||+|++++.++.....++.++|++||+|||||++++++++
T Consensus 255 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~~~~~~~~f~~eL~WRREf~~~~~~~~ 334 (506)
T 3umv_A 255 GSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQ 334 (506)
T ss_dssp CTTTCHHHHTGGGHHHHTTCTTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGGSHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred hhHHHHHHhHHhhhccccCCccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhhccccHHHHHHHHHHhHHHHHHHHHhC
Confidence 88889999999999999999975579999999999999999999999987765455678999999999889999999999
Q ss_pred CCCcccccchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHhcCccCCCccHHHHH
Q 011155 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEAL 402 (492)
Q Consensus 323 p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~vak~LidW~~G~~~a~ 402 (492)
|+|+.+.+.++|..+++.+|..|.+++.+.|++|++|+|||||||||||||++|||||||+||+|||+||+|+.|+++|+
T Consensus 335 p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~ak~ll~W~~g~~~~~ 414 (506)
T 3umv_A 335 PQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEAL 414 (506)
T ss_dssp TTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSSSHHHHH
T ss_pred cchhhhhccchhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHHHHhCchhHHHHHHHHHhhccCCCCHHHHH
Confidence 99988777789998888877666554444699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCcCceEeecccCCCCCCCCCCcCcccccCcchhhhcCCchh---HHHhhhhhhcCCCcccc
Q 011155 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG---YIAYVKRIVGGTKKRRA 479 (492)
Q Consensus 403 ~~~~~f~~~yliD~d~a~n~~~wqw~a~G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~---yir~wvPeL~~~~~~~~ 479 (492)
++++||+++||||||+||||+||||++||++++||+++||||+||+|||++|++||||+| |||+|||||+++|.+..
T Consensus 415 ~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~p~fg~iR~~np~~q~~k~Dp~gyi~yir~wvpel~~~~~~~~ 494 (506)
T 3umv_A 415 STAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEES 494 (506)
T ss_dssp HHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhhccCcccCccccccceeEEecCCCCCCCccccccCcceeECHHHHHHHhCCCchHHHHHHhCHHhcCCCcccc
Confidence 999999998899999999999999999999999999999999999999999999999987 99999999999999976
Q ss_pred cccc
Q 011155 480 DSLV 483 (492)
Q Consensus 480 ~~~~ 483 (492)
.+..
T Consensus 495 ~~~~ 498 (506)
T 3umv_A 495 PNPV 498 (506)
T ss_dssp ----
T ss_pred cccc
Confidence 6544
No 2
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=2.3e-103 Score=835.90 Aligned_cols=454 Identities=49% Similarity=0.850 Sum_probs=373.4
Q ss_pred CCCCCCccccccccccccCcCCCCCCcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhHHHHHH
Q 011155 4 LTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML 83 (492)
Q Consensus 4 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~ 83 (492)
|.|-.-.++++||+++|+.+. +.+ .+|||||||||++||+||.+|++.|.+.+.+|+||||+||.+...+.+|++||+
T Consensus 14 ~~~~~~~~~~~r~~~~~~~~~-~~g-~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~ 91 (482)
T 2xry_A 14 LVPRGSHMNPKRIRALKSGKQ-GDG-PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFML 91 (482)
T ss_dssp CCCTTCCCCGGGEEEEECCCC-CSS-CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCHHHHHHHH
T ss_pred cCcccccCCHHHhHHhhcCCC-CCC-cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCHHHHHHHH
Confidence 555556689999999999866 334 899999999999999999999987766678999999999998888999999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEEeCceeEeCc
Q 011155 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVW 163 (492)
Q Consensus 84 esL~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~~~v~~~~~~~~~l~~~~ 163 (492)
+||++|+++| +++|++|+++.|++.++|.+|+++++|++|+++.++...+++++++|++.+ ||+++++++++|++++
T Consensus 92 ~sL~~L~~~L-~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l--gi~~~~~~~~~l~~~~ 168 (482)
T 2xry_A 92 KGLQELEVSL-SRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI--SIPFFEVDAHNVVPCW 168 (482)
T ss_dssp HHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC--CSCEEEECCSSSSCHH
T ss_pred HHHHHHHHHH-HHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc--CCEEEEEeCCEEcccc
Confidence 9999999999 999999999999999999999999999999998888877788899998877 9999999999999998
Q ss_pred ccccCCCCccccchHHHHhhCCccccCCCCCcCCCCcCCC-CCCCC-C-hhHH-----HHHHh--hcCCCCCCc---CcC
Q 011155 164 VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSI-D-WDSI-----IAAVL--RKGAEVPEI---GWC 230 (492)
Q Consensus 164 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~p~~~p~~~-~~~~~-~-~~~~-----~~~~~--~~~~~~~~~---~~~ 230 (492)
.+.++.+|.++||++++.+.+..++.+.|...|.+.|... .+..+ + ...+ .+.+. .++...... ..+
T Consensus 169 ~~~~~~~~~v~tf~~~~~~~~~~~~~~~p~~~p~~~~~~lp~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 248 (482)
T 2xry_A 169 EASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHF 248 (482)
T ss_dssp HHCSSCCSSHHHHHHHHHHHHHHHCCCCCCCCCCSSCCC---------CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTSC
T ss_pred ccccCCCCceecchHHHHHHHHhhccccCCCCCCCCccccCCccchhhhhhhhcccCCCCCcchhhhccccccccccCCC
Confidence 8777777999999988877665444433211011111000 00000 0 1111 11110 111111111 147
Q ss_pred CCcHHHHHHHHccchhHHHHhhhcCCCCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHhhhCCccHHHHHHHhHh
Q 011155 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310 (492)
Q Consensus 231 ~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fi~eL~w 310 (492)
+|||++|+++| ++|+++++.+|+++||.|+. ++||+|||||+||+||||+|++++.++.. ..++.++|++||+|
T Consensus 249 ~~Ge~~A~~~L----~~Fl~~~l~~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~-~~~~~e~fl~ELi~ 322 (482)
T 2xry_A 249 EPGEKAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQRVVLEVEKAES-NPGSKKAFLDEILI 322 (482)
T ss_dssp CCSHHHHHHHH----HHHHHHTHHHHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHCCC-CTTHHHHHHHHHTH
T ss_pred CCcHHHHHHHH----HHHHHHHHhhhccccCCCCc-cCCCCcCHHHhCCccCHHHHHHHHHHhhc-ccccHHHHHHHHHH
Confidence 99999999999 99999999999999999998 99999999999999999999999987543 35678999999995
Q ss_pred HHHHHHHHHHhCCCCcccccchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHhcC
Q 011155 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKK 390 (492)
Q Consensus 311 RrEf~~~~~~~~p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~vak~ 390 (492)
||||++++++++|+|+.+++.++|...++.+|..|++++.+.+++|++|+|||||||||||||++|||||||+||||||+
T Consensus 323 WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDAaMrqL~~tG~mHnr~RM~vak~ 402 (482)
T 2xry_A 323 WKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAKK 402 (482)
T ss_dssp HHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHHHHHHHHHhCccccHHHHHHHcc
Confidence 56999999999999998777778987777655445444444699999999999999999999999999999999999999
Q ss_pred ccCC-CccHHHHHHHHHHHhhhccccCCCCCCCcCceEeecccCCCCCCCCCCcCcccccCcchhhhcCCchhHHHhhhh
Q 011155 391 ILEW-TTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469 (492)
Q Consensus 391 LidW-~~G~~~a~~~~~~f~~~yliD~d~a~n~~~wqw~a~G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~yir~wvP 469 (492)
|||| +.|++ +...+.+++++|+||||+|||+|||||++||++++||+++||||+||||||++|++||||++|||+|++
T Consensus 403 LidW~~~ge~-~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p~fg~~R~fnp~~q~~kfD~~~yir~w~~ 481 (482)
T 2xry_A 403 ILEWSESPEK-ALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYIEKYSA 481 (482)
T ss_dssp HHHTSSSHHH-HHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHHHHHHTC-
T ss_pred cCCCCchHHH-HHHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCcccccccccceeechhHhhhhcCHHHHHHHHhc
Confidence 9999 77787 222233455666799999999999999999999999999999999999999999999999999999995
No 3
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=5.7e-99 Score=804.64 Aligned_cols=422 Identities=18% Similarity=0.216 Sum_probs=337.6
Q ss_pred CCCcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc------------cchhHHHHHHHHHHHHHHHHH
Q 011155 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG------------AKARQLGFMLRGLRLLQRNIE 94 (492)
Q Consensus 27 ~~~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~------------~~~~r~~Fl~esL~~L~~~L~ 94 (492)
.++++||||||||||+||+||++|++ .+.+|+||||+||.++. .+++|++||++||.+|+++|
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L- 77 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSL- 77 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHH-
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHH-
Confidence 35678999999999999999999986 46799999999997643 68999999999999999999
Q ss_pred hhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEEeCceeEeCcccc---cCCC
Q 011155 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS---EKLE 170 (492)
Q Consensus 95 ~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~-~~v~~~~~~~~~l~~~~~~~---~~~~ 170 (492)
+++|++|+|+.|++.++|.+|+++++|++|+++.++...++.||++|+++|. .||.++++++++|++|+.+. .+++
T Consensus 78 ~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~ 157 (537)
T 3fy4_A 78 KKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKP 157 (537)
T ss_dssp HHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSC
T ss_pred HHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCC
Confidence 9999999999999999999999999999999987777777899999999994 89999999999999998653 2458
Q ss_pred CccccchH-HHHhhCCccccCCCCCcCCCCcCCCCCCCCChhHHHHHHhhcCCC---CCCcCcCCCcHHHHHHHHccchh
Q 011155 171 YSAKTLRG-KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE---VPEIGWCESGEDAAMEVLKGSKD 246 (492)
Q Consensus 171 ~~~~t~~~-~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gGe~~A~~~L~~~~~ 246 (492)
|.+||+|+ ++.+... ...|.... |...|.......+.... +|.+.+++.. ......++|||++|+++| +
T Consensus 158 y~vftpf~k~~~~~~~-~~~p~~~~-p~~~~~~~~~~~~~~~~-~p~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~ 230 (537)
T 3fy4_A 158 PLSYQSFLKVAGEPSC-AKSELVMS-YSSLPPIGDIGNLGISE-VPSLEELGYKDDEQADWTPFRGGESEALKRL----T 230 (537)
T ss_dssp CSSHHHHHHHHCCCTT-TTCCCCCC-CSCCCCCCCCCSSCCCC-CCCTTTTTCCGGGSSCCCSCCCSHHHHHHHH----H
T ss_pred CCccCHHHHHHHhhcC-CcCCCCCc-cccCCCccccccccccc-CCcHHhcCCCcccccccCCCCccHHHHHHHH----H
Confidence 99999775 4443211 01111000 11111100000000000 0111122211 011224799999999999 9
Q ss_pred HHHHh--hhcCCCCCCCCCCC--CCCCCcccccccCCCCCHHHHHHHHHHHhhh---CCccHHHHHHHhHhHHHHHHHHH
Q 011155 247 GFLTK--RLKNYPTDRNNPLK--PRALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFLEELIVRRELADNFC 319 (492)
Q Consensus 247 ~Fl~~--~l~~Y~~~Rd~p~~--~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~---~~~~~~~fi~eL~wRrEf~~~~~ 319 (492)
+|+.+ .+.+|+..||.|+. .++||+|||||+|||||||+|++++.++... ..++.++|++||+|| |||++++
T Consensus 231 ~Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~~~~ 309 (537)
T 3fy4_A 231 KSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWR-EFFYTTA 309 (537)
T ss_dssp HHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTSCCCCTTTSHHHHHHHH-HHHHHHH
T ss_pred HHHhCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcccccccHHHHHHHHHHH-HHHHHHH
Confidence 99986 69999999999962 3799999999999999999999999875432 245578899999988 9999999
Q ss_pred HhCCCCcccccchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----c-Cc-cC
Q 011155 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----K-KI-LE 393 (492)
Q Consensus 320 ~~~p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k-~L-id 393 (492)
+++|++...+....|..-.. ..|+ ..|++|++|+|||||||||||||++|||||||+||||| | +| ||
T Consensus 310 ~~~p~~~~~~~~~~~~~~~w---~~~~----~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~id 382 (537)
T 3fy4_A 310 FGTPNFDKMKGNRICKQIPW---NEDH----AMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIH 382 (537)
T ss_dssp HTCTTTTSSTTCTTSCCCCC---BCCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBC
T ss_pred HHCcchhcccCChhhhcCCc---hhhh----HHHHHHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCC
Confidence 99999876543322221000 0233 25999999999999999999999999999999999998 6 89 99
Q ss_pred CCccHHHHHHHHHHHhhhccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhh
Q 011155 394 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIV 471 (492)
Q Consensus 394 W~~G~~~a~~~~~~f~~~yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL 471 (492)
|+.|++ ||+++ |||||+|||+|||||+|| |+|+ .|| |||||++|++||||+| |||+|||||
T Consensus 383 Wr~G~~-------~F~~~-liD~D~a~n~g~Wqw~ag~g~d~------~~f---RifNP~~Q~~kfDp~G~yIr~wvPEL 445 (537)
T 3fy4_A 383 WEQGRD-------VFERL-LIDSDWAINNGNWMWLSCSSFFY------QFN---RIYSPISFGKKYDPDGKYIRHFLPVL 445 (537)
T ss_dssp HHHHHH-------HHHHH-CTTCCHHHHHHHHHHHTTSSSCC------CTT---CCCCTTTTGGGTCTTCHHHHHHCGGG
T ss_pred cHHHHH-------HHHHH-ccccccccChHhhhhhcccCCCc------ccc---cccCHHHHHHHhCCCchHHHHhCHhh
Confidence 999999 99999 899999999999999995 7765 389 9999999999999998 999999999
Q ss_pred cCCCcccccccccC
Q 011155 472 GGTKKRRADSLVSG 485 (492)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (492)
++||+++||.||.-
T Consensus 446 ~~lp~~~Ih~Pw~~ 459 (537)
T 3fy4_A 446 KDMPKQYIYEPWTA 459 (537)
T ss_dssp TTCCTTTTTCGGGS
T ss_pred cCCCHHhhCCcccC
Confidence 99999999999954
No 4
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=1.1e-97 Score=796.36 Aligned_cols=424 Identities=15% Similarity=0.148 Sum_probs=335.7
Q ss_pred CCcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc---cchhHHHHHHHHHHHHHHHHHhhc---CCcE
Q 011155 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETF---QILF 101 (492)
Q Consensus 28 ~~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~l---G~~L 101 (492)
++.+||||||||||+||+||++|++.+. .+.+|+||||+||.++. .+.+|++||++||.+|+++| +++ |++|
T Consensus 3 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~~~~G~~L 80 (538)
T 3tvs_A 3 RGANVIWFRHGLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQL-QAATDGRGRL 80 (538)
T ss_dssp SCEEEEEESSCCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHG-GGSCSSSSCC
T ss_pred CCcEEEEeCCCcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHH-HHhhcCCCeE
Confidence 4678999999999999999999987432 23489999999998763 78999999999999999999 999 9999
Q ss_pred EEEeCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEEeCceeEeCcccc--c-CCCCccccch
Q 011155 102 FLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--E-KLEYSAKTLR 177 (492)
Q Consensus 102 ~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~-~~v~~~~~~~~~l~~~~~~~--~-~~~~~~~t~~ 177 (492)
+|+.|++.++|.+|+++++|++|+++.++...+++||++|+++|. .||.++++++++|++|+.+. + +.+|.+||.|
T Consensus 81 ~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f 160 (538)
T 3tvs_A 81 LVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMF 160 (538)
T ss_dssp EEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHH
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcchHHH
Confidence 999999999999999999999999976665556889999999994 89999999999999998653 2 3467788766
Q ss_pred HHHHhhCCccccCCCCCcCCCCcCCCCCCCC--Chh--HHHHHHhhcCCCCC-----CcCcCCCcHHHHHHHHccchhHH
Q 011155 178 GKINKLLPEYLIDYPMLEQPIEKWTGTRQSI--DWD--SIIAAVLRKGAEVP-----EIGWCESGEDAAMEVLKGSKDGF 248 (492)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~--~~~--~~~~~~~~~~~~~~-----~~~~~~gGe~~A~~~L~~~~~~F 248 (492)
++..+.+.....|.+............+... +.. ..+|.+.+++.... ....++|||++|+++| ++|
T Consensus 161 ~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~Ge~~A~~~L----~~F 236 (538)
T 3tvs_A 161 LHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLL----DER 236 (538)
T ss_dssp HHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCCSSCCCCCCCCCCHHHHHHHH----HHH
T ss_pred HHHHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCCcccccccccCCCCCCHHHHHHHH----HHH
Confidence 5443333322222221100000000000000 000 00012212221110 1235799999999999 999
Q ss_pred HHh----hhcCCCCCCCCCCC-CCCCCcccccccCCCCCHHHHHHHHHHHhhhC----------CccHHHHHHHhHhHHH
Q 011155 249 LTK----RLKNYPTDRNNPLK-PRALSGLSPYLHFGQISAQRCALEARKARKLC----------PEAIDTFLEELIVRRE 313 (492)
Q Consensus 249 l~~----~l~~Y~~~Rd~p~~-~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~----------~~~~~~fi~eL~wRrE 313 (492)
+.. .+.+|+..||.|.. .++||+|||||+|||||||+|++++.++.... ..+.++|++||+|| |
T Consensus 237 l~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~eL~WR-e 315 (538)
T 3tvs_A 237 LKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWR-E 315 (538)
T ss_dssp HHHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSCCCCCSSSCCTTTTTTHHHHHHH-H
T ss_pred HHhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcccccccccccchHHHHHHHHHHH-H
Confidence 942 38999999999862 27999999999999999999999998765321 13458899999998 9
Q ss_pred HHHHHHHhCCCCcccccc-----hhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh
Q 011155 314 LADNFCFYQPNYDSLKGA-----WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA 388 (492)
Q Consensus 314 f~~~~~~~~p~~~~~~~~-----~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va 388 (492)
||+++++++|++...+.. ++|.. .|+ +.|++|++|+|||||||||||||++|||||||+|||||
T Consensus 316 f~~~~~~~~p~~~~~~~~~~~~~~~w~~-------~~~----~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~vA 384 (538)
T 3tvs_A 316 YFYTMSVNNPNYDRMEGNDICLSIPWAK-------PNE----NLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVA 384 (538)
T ss_dssp HHHHHHHHSSCTTSSSSCSSCCCCCCCC-------CCS----SHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHhCcchhhccCChhhhcCCccc-------cCH----HHHHHHHhCCCCCHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 999999999998754432 23431 022 25999999999999999999999999999999999997
Q ss_pred ----c-Cc-cCCCccHHHHHHHHHHHhhhccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCch
Q 011155 389 ----K-KI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVD 461 (492)
Q Consensus 389 ----k-~L-idW~~G~~~a~~~~~~f~~~yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~ 461 (492)
| +| |||+.|++ ||+++ |||||+|||+|||||+|| |+|+ .+||| |||||++|++||||+
T Consensus 385 sfl~k~~L~idWr~G~~-------~F~~~-llD~D~a~n~g~Wqw~ag~g~Dd----~~pyf---RifNP~~Q~~kfDp~ 449 (538)
T 3tvs_A 385 TFLTRGGLWQSWEHGLQ-------HFLKY-LLDADWSVCAGNWMWVSSSAFER----LLDSS---LVTCPVALAKRLDPD 449 (538)
T ss_dssp HHHTTTTTCCCHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHSCCCSSC----CCTHH---HHCSTTTHHHHSCTT
T ss_pred HHHHHhhhCCCchHHHH-------HHHHH-cccCchhhchhhhhhhhcCCCcC----CCCce---eeeCHHHHHHHhCCC
Confidence 7 89 99999998 99999 899999999999999985 7753 36999 999999999999999
Q ss_pred h-HHHhhhhhhcCCCccccccccc
Q 011155 462 G-YIAYVKRIVGGTKKRRADSLVS 484 (492)
Q Consensus 462 ~-yir~wvPeL~~~~~~~~~~~~~ 484 (492)
| |||+|||||++||+++||.||.
T Consensus 450 G~YIrrwvPEL~~lp~~~Ih~Pw~ 473 (538)
T 3tvs_A 450 GTYIKQYVPELMNVPKEFVHEPWR 473 (538)
T ss_dssp CTTGGGTCGGGSSSCCSSCCSHHH
T ss_pred cchHHHhChhhcCCCHHhhcCccc
Confidence 8 9999999999999999999994
No 5
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=4.2e-97 Score=783.34 Aligned_cols=414 Identities=19% Similarity=0.242 Sum_probs=338.2
Q ss_pred cEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc---ccchhHHHHHHHHHHHHHHHHHhhcCCcEEEE--
Q 011155 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLF-- 104 (492)
Q Consensus 30 ~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~-- 104 (492)
++||||||||||+||+||.+|++. + ..+|+||||+||.++ ..+.+|++||++||++|+++| +++|++|+++
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~--~-~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L-~~~G~~L~v~~~ 77 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRN--S-SARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIAL-AEKGIPLLFREV 77 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSS--T-TSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEC
T ss_pred CEEEEeCCCCcccchHHHHHHHhC--C-CCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEEc
Confidence 479999999999999999999852 1 348999999999864 578999999999999999999 9999999999
Q ss_pred --eCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEEeCceeEeCcccc--cCCCCccccc-hHH
Q 011155 105 --QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVAS--EKLEYSAKTL-RGK 179 (492)
Q Consensus 105 --~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~~~v~~~~~~~~~l~~~~~~~--~~~~~~~~t~-~~~ 179 (492)
.|++.++|.+|+++++|+.|+++.++...++.||++|+++|.. |+++++++++|++++.+. ++++|.+||+ +++
T Consensus 78 ~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~-i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~ 156 (471)
T 1dnp_A 78 DDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNA 156 (471)
T ss_dssp SSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT-SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC-cEEEEecCCEEEchhhcccCCCCCCcchHHHHHH
Confidence 8999999999999999999999877777778999999999965 999999999999998654 3578999994 467
Q ss_pred HHhhCCc-cccCCCCCcCCCCcCCCCCCCCChhHHHHHHhhcCCCCCCcCcCCCcHHHHHHHHccchhHHHHhhhcCCCC
Q 011155 180 INKLLPE-YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258 (492)
Q Consensus 180 ~~~~~~~-~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~ 258 (492)
+.+.+.+ ...+.|. |...+.... ..... +++ .+.........++|||++|+++| ++|+++++.+|++
T Consensus 157 ~~~~l~~~~p~~~~~--p~~~~~~~~-~~~~~----~~l-~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~l~~Y~~ 224 (471)
T 1dnp_A 157 WLKRLREGMPECVAA--PKVRSSGSI-EPSPS----ITL-NYPRQSFDTAHFPVEEKAAIAQL----RQFCQNGAGEYEQ 224 (471)
T ss_dssp HHHHHHTCCCCCCCC--CCCCTTCCC-CCCCC----CCC-CSCCCCCCTTTSCCSHHHHHHHH----HHHHHTHHHHHHH
T ss_pred HHHhccccCCCCCCC--ccccCcccc-cCCCC----ccc-CCCccccccccCCCCHHHHHHHH----HHHHHHHHHHhhh
Confidence 7765432 1111111 111110000 00000 111 11111000134799999999999 9999999999999
Q ss_pred CCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHhhh-CCcc-HHHHHHHhHhHHHHHHHHHHhCCCCcccccchhHHH
Q 011155 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-CPEA-IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWAR 336 (492)
Q Consensus 259 ~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~-~~~~-~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~~~~w~~ 336 (492)
+||.|+. ++||+|||||+||+||||+|++++.+...+ ..++ .++|++||+|| |||+++++++|++....+..++..
T Consensus 225 ~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~~~~~~~~~ 302 (471)
T 1dnp_A 225 QRDFPAV-EGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWR-EFYRHLITYHPSLCKHRPFIAWTD 302 (471)
T ss_dssp HTTCTTS-CCSCCCHHHHHHTSSCHHHHHHHHHHHCGGGGGTSTTHHHHHHHHHH-HHHHHHHHHCGGGGGTCCSSGGGG
T ss_pred ccCCcCc-cCCCCCCHhHcCCCcCHHHHHHHHHHHhccccccccHHHHHHHHHHH-HHHHHHHHhCCchhccCCcchhhh
Confidence 9999998 899999999999999999999999876542 1356 78999999998 999999999999875412212211
Q ss_pred HhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----cCc-cCCCccHHHHHHHHHHHhhh
Q 011155 337 KSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDK 411 (492)
Q Consensus 337 ~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idW~~G~~~a~~~~~~f~~~ 411 (492)
. ++ ...|++ .|++|++|+|||||||||||||++|||||||+||+|| |+| |||+.|++ ||+++
T Consensus 303 ~-l~-w~~d~~----~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~-------~F~~~ 369 (471)
T 1dnp_A 303 R-VQ-WQSNPA----HLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGER-------YFMSQ 369 (471)
T ss_dssp G-SC-CCCCHH----HHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH-------HHHTT
T ss_pred c-CC-CcCCHH----HHHHHHhCCCCCHHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHH-------HHHHh
Confidence 1 11 113432 5999999999999999999999999999999999998 898 99999999 99999
Q ss_pred ccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhhcCCCccccccccc
Q 011155 412 YEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGTKKRRADSLVS 484 (492)
Q Consensus 412 yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL~~~~~~~~~~~~~ 484 (492)
|||||+|||+|||||+|| |+|+ +||| |||||++|++||||+| |||+|||||+++|+++||.||.
T Consensus 370 -llD~d~a~n~g~wqw~ag~G~d~-----~py~---RifNp~~q~~kfDp~G~YIrrwvPeL~~~p~~~ih~Pw~ 435 (471)
T 1dnp_A 370 -LIDGDLAANNGGWQWAASTGTDA-----APYF---RIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWK 435 (471)
T ss_dssp -CTTCCHHHHHHHHHHHTTCSTTC-----CCTT---CCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHH
T ss_pred -ccCCCcccCHHHHHhhcCCCCCC-----CCcc---eecCHHHHHHhcCCCchhHHHhChhhccCChhhcCCchh
Confidence 899999999999999995 7775 6999 9999999999999998 9999999999999999999995
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=8.4e-97 Score=784.57 Aligned_cols=408 Identities=21% Similarity=0.275 Sum_probs=338.9
Q ss_pred CCcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc---ccchhHHHHHHHHHHHHHHHHHhhcCCcEEEE
Q 011155 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLF 104 (492)
Q Consensus 28 ~~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~ 104 (492)
++.+|||||||||++||+||.+|++. +.+|+||||+||.++ ..+.+|++||++||++|+++| +++|++|+++
T Consensus 2 ~~~~l~WfrrDLRl~Dn~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L-~~~G~~L~v~ 76 (484)
T 1owl_A 2 AAPILFWHRRDLRLSDNIGLAAARAQ----SAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRY-QQAGSRLLLL 76 (484)
T ss_dssp -CCEEEEESSCCCSSSCHHHHHHHHH----CSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHH-HHHTSCEEEE
T ss_pred CccEEEEECCCCCcchhHHHHHHHhc----CCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEE
Confidence 45789999999999999999999863 348999999999764 478999999999999999999 9999999999
Q ss_pred eCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEEeCceeEeCcccc--cCCCCccccc-hHHH
Q 011155 105 QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--EKLEYSAKTL-RGKI 180 (492)
Q Consensus 105 ~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~-~~v~~~~~~~~~l~~~~~~~--~~~~~~~~t~-~~~~ 180 (492)
.|++.++|.+|+++++|++|+++.++...++.||++|+++|. .||+++++++++|++++.+. ++++|.+||+ ++++
T Consensus 77 ~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~ 156 (484)
T 1owl_A 77 QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNW 156 (484)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHH
Confidence 999999999999999999999987777777899999999994 89999999999999998654 3578999995 4677
Q ss_pred HhhCCccccCCCCCcCCCCcCCCC-------CC-CCChhHHHHHHhhcCCCC-CCcCcCCCcHHHHHHHHccchhHHHHh
Q 011155 181 NKLLPEYLIDYPMLEQPIEKWTGT-------RQ-SIDWDSIIAAVLRKGAEV-PEIGWCESGEDAAMEVLKGSKDGFLTK 251 (492)
Q Consensus 181 ~~~~~~~~~~~~~~~p~~~p~~~~-------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~gGe~~A~~~L~~~~~~Fl~~ 251 (492)
.+.+. ..|.|. |...+.... +. .... +.+..++... ... .|+|||++|+++| ++|+++
T Consensus 157 ~~~~~--~~p~~~--p~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~-~~~~Ge~~A~~~L----~~Fl~~ 223 (484)
T 1owl_A 157 QAQPK--PTPVAT--PTELVDLSPEQLTAIAPLLLSEL----PTLKQLGFDWDGGF-PVEPGETAAIARL----QEFCDR 223 (484)
T ss_dssp HHSCC--CCCCCC--CCSCCCCCHHHHHHHGGGCCSSC----CCTGGGTCCCCSCC-SSCSSHHHHHHHH----HHHHHT
T ss_pred HHhcC--CCCCCC--ccccccccccccccccccccCCC----CCHHHcCCCccccC-cCCCCHHHHHHHH----HHHHHH
Confidence 76543 222222 111110000 00 0000 1111111100 012 4799999999999 999999
Q ss_pred hhcCCCCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHhhh-----CCccHHHHHHHhHhHHHHHHHHHHhCCCCc
Q 011155 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-----CPEAIDTFLEELIVRRELADNFCFYQPNYD 326 (492)
Q Consensus 252 ~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~-----~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~ 326 (492)
++.+|+++||.|+. ++||+|||||+||+||||+|++++.+.... ..++.++|++||+|| |||+++++++|++.
T Consensus 224 ~l~~Y~~~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~~~~fl~eL~WR-Ef~~~~~~~~P~~~ 301 (484)
T 1owl_A 224 AIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWR-EFYQHALYHFPSLA 301 (484)
T ss_dssp GGGGHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCGGGG
T ss_pred HHHHhccccCCCCc-cCCcCccHhHcCCCcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH-HHHHHHHHhCCccc
Confidence 99999999999998 999999999999999999999999876531 135678999999988 99999999999986
Q ss_pred cccc-----chhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----cCc-cCCCc
Q 011155 327 SLKG-----AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTT 396 (492)
Q Consensus 327 ~~~~-----~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idW~~ 396 (492)
.... .++|. .|++ .|++|++|+|||||||||||||++|||||||+||||| |+| |||+.
T Consensus 302 ~~~~~~~~~~l~w~--------~d~~----~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~ 369 (484)
T 1owl_A 302 DGPYRSLWQQFPWE--------NREA----LFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRR 369 (484)
T ss_dssp GSCCSTGGGGCCCC--------CCHH----HHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHH
T ss_pred cccCChhhhcCCCc--------CCHH----HHHHHHcCCCCChhHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcH
Confidence 4321 12342 2332 5999999999999999999999999999999999999 898 99999
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhhcCC
Q 011155 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGT 474 (492)
Q Consensus 397 G~~~a~~~~~~f~~~yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL~~~ 474 (492)
|++ ||+++ |||||+|||+|||||+|| |+|+ +| | |||||++|++||||+| |||+|||||+++
T Consensus 370 g~~-------~F~~~-llD~d~a~n~g~wqw~ag~G~d~-----~p-f---RifNp~~q~~kfDp~g~yIr~wvPeL~~~ 432 (484)
T 1owl_A 370 GEQ-------FFMQH-LVDGDLAANNGGWQWSASSGMDP-----KP-L---RIFNPASQAKKFDATATYIKRWLPELRHV 432 (484)
T ss_dssp HHH-------HHHTT-CTTCCHHHHHHHHHHTTTCSSSC-----CC-C---CCCCHHHHHHHHSTTCHHHHHHCGGGTTS
T ss_pred HHH-------HHHHh-cccCCcccCHHHHHHhhCcCCCC-----Cc-c---ceeCHHHHhhhcCCCchhHHHhChhhhcC
Confidence 999 99999 899999999999999995 7886 58 8 9999999999999998 999999999999
Q ss_pred Cccccccccc
Q 011155 475 KKRRADSLVS 484 (492)
Q Consensus 475 ~~~~~~~~~~ 484 (492)
|+++||.||.
T Consensus 433 p~~~ih~Pw~ 442 (484)
T 1owl_A 433 HPKDLISGEI 442 (484)
T ss_dssp CHHHHHHTCC
T ss_pred ChhhcCCccc
Confidence 9999999995
No 7
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=3.7e-95 Score=776.88 Aligned_cols=413 Identities=18% Similarity=0.194 Sum_probs=328.7
Q ss_pred CCCcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc---cchhHHHHHHHHHHHHHHHHHhhcCCcEEE
Q 011155 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFL 103 (492)
Q Consensus 27 ~~~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v 103 (492)
.++.+|||||||||++||+||.+|++. .+|+||||+||.++. .+..+..||++||++|+++| +++|++|++
T Consensus 10 ~~~~~l~WfrrDLRl~DN~aL~~A~~~-----~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L-~~~G~~L~v 83 (509)
T 1u3d_A 10 SGGCSIVWFRRDLRVEDNPALAAAVRA-----GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL-RSLGTCLIT 83 (509)
T ss_dssp ---CEEEEESSCCCSTTCHHHHHHHHH-----SCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCCcEEEEECCCCccchhHHHHHHHhC-----CCEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHH-HHCCCeEEE
Confidence 346789999999999999999999873 389999999998643 35566679999999999999 999999999
Q ss_pred Ee-CChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEEeCceeEeCcccc--cCCCCccccch-H
Q 011155 104 FQ-GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--EKLEYSAKTLR-G 178 (492)
Q Consensus 104 ~~-G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~-~~v~~~~~~~~~l~~~~~~~--~~~~~~~~t~~-~ 178 (492)
+. |++.++|.+|+++++|++|+++.++...++.||++|+++|. .||+++++++++|++|+.+. ++.+|.+||+| +
T Consensus 84 ~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r 163 (509)
T 1u3d_A 84 KRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWE 163 (509)
T ss_dssp EECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHH
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHHHH
Confidence 98 69999999999999999999975545555889999999994 89999999999999998654 46778888866 4
Q ss_pred HHHhhCCccccCCCCCcCCCCcCCC----CCCCCChhHHHHHHhhcCCCCCCcCcCCCcHHHHHHHHccchhHHHHhhhc
Q 011155 179 KINKLLPEYLIDYPMLEQPIEKWTG----TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254 (492)
Q Consensus 179 ~~~~~~~~~~~~~~~~~p~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~ 254 (492)
++.+.......+.+. |...+... ....+......+.. . ... ....|+|||++|+++| ++|+++++.
T Consensus 164 ~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~-~~~~~~~Ge~~A~~~L----~~Fl~~~l~ 233 (509)
T 1u3d_A 164 RCLSMPYDPESPLLP--PKKIISGDVSKCVADPLVFEDDSEKG-S--NAL-LARAWSPGWSNGDKAL----TTFINGPLL 233 (509)
T ss_dssp HHHTCSSCCCCCCCC--CSCCCBTTGGGSSCCCCCCCCHHHHH-H--HTT-HHHHCCCSHHHHHHHH----HHHHTTGGG
T ss_pred HHHhccCCCCCCCCC--ccccCccccCCCChhHhCCCcccccc-h--hhh-ccccCCCcHHHHHHHH----HHHHHHHHH
Confidence 454431111111111 11111000 00000000000000 0 000 0013799999999999 999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHh-----hh---CCccHHHHHHHhHhHHHHHHHHHHhCCCCc
Q 011155 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR-----KL---CPEAIDTFLEELIVRRELADNFCFYQPNYD 326 (492)
Q Consensus 255 ~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~-----~~---~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~ 326 (492)
+|+.+||.|+. ++||+|||||+||+||||+|++++.++. .. ..++.+.|++||+|| ||++++++++|++.
T Consensus 234 ~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WR-Ef~~~~~~~~p~~~ 311 (509)
T 1u3d_A 234 EYSKNRRKADS-ATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLR-EYSRYISFNHPYSH 311 (509)
T ss_dssp GTTTTTTCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSSTTTT
T ss_pred hhhhccCCCCC-CCCCCCChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHH-HHHHHHHHhCcccc
Confidence 99999999998 8999999999999999999999987643 11 234578899999998 99999999999854
Q ss_pred ccc-----cchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----cCc-cCCCc
Q 011155 327 SLK-----GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTT 396 (492)
Q Consensus 327 ~~~-----~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idW~~ 396 (492)
..+ ..++|. .|+ +.|++|++|+|||||||||||||++|||||||+||||| |+| |||+.
T Consensus 312 ~~~~~~~~~~lpW~--------~d~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~ 379 (509)
T 1u3d_A 312 ERPLLGHLKFFPWA--------VDE----NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRW 379 (509)
T ss_dssp TSCSCCTTTTCCCC--------CCH----HHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHH
T ss_pred ccchhhhhccCCCc--------CCh----HHHHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCCchH
Confidence 321 123464 233 25999999999999999999999999999999999998 788 99999
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhhcCC
Q 011155 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGT 474 (492)
Q Consensus 397 G~~~a~~~~~~f~~~yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL~~~ 474 (492)
|++ ||+++ |||||+|||+|||||+|| |+|+ +||| |||||++|++||||+| |||+|||||+++
T Consensus 380 G~~-------~F~~~-liD~D~a~n~g~wqw~ag~g~d~-----~py~---RifNP~~Q~~kfDp~G~yIrrwvPEL~~~ 443 (509)
T 1u3d_A 380 GMK-------YFWDT-LLDADLESDALGWQYITGTLPDS-----REFD---RIDNPQFEGYKFDPNGEYVRRWLPELSRL 443 (509)
T ss_dssp HHH-------HHHHH-CTTCCHHHHHHHHHHHHTCSTTC-----CCSS---CCCCHHHHHHHHCTTSHHHHHHCGGGTTC
T ss_pred HHH-------HHHHH-hccCCcccchHHHHHHhcCCCCC-----Cccc---cccCHHHHHHhcCCCchhHHHhCHHhhcc
Confidence 999 99999 899999999999999995 6664 6999 9999999999999998 999999999999
Q ss_pred CcccccccccC
Q 011155 475 KKRRADSLVSG 485 (492)
Q Consensus 475 ~~~~~~~~~~~ 485 (492)
|+++||.||.-
T Consensus 444 p~~~ih~Pw~~ 454 (509)
T 1u3d_A 444 PTDWIHHPWNA 454 (509)
T ss_dssp CHHHHTCTTTS
T ss_pred ccccccCcccC
Confidence 99999999963
No 8
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-95 Score=763.86 Aligned_cols=380 Identities=19% Similarity=0.211 Sum_probs=323.8
Q ss_pred EEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----cchhHHHHHHHHHHHHHHHHHhhcCCcEEEEeC
Q 011155 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLRGLRLLQRNIEETFQILFFLFQG 106 (492)
Q Consensus 31 ~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~----~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~G 106 (492)
+||||||||||+||+||.+|++. +.+|+||||+||.++. .+.+|++||++||++|+++| +++|++|+++.|
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~L~v~~g 77 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSE----CDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDEL-RKKGSRLNVFFG 77 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHH-HTTTCCCEEEES
T ss_pred EEEEeCCCCccchhHHHHHHHhc----CCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHH-HHcCCeEEEEEC
Confidence 79999999999999999999973 6799999999998643 78999999999999999999 999999999999
Q ss_pred ChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHh-cCCCeEEEEeCceeEeCcccccCCCCccccch-HHHHhh-
Q 011155 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR-GKINKL- 183 (492)
Q Consensus 107 ~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l-~~~v~~~~~~~~~l~~~~~~~~~~~~~~~t~~-~~~~~~- 183 (492)
++.++|.+|++ +|+.|+++.++...++.||++|+++| +.||+++++++++|++++.+ +|++||+| +++.+.
T Consensus 78 ~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~----~y~vftpf~~~~~~~~ 151 (440)
T 2e0i_A 78 EAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF----HHRNFTSFYNEVSKVK 151 (440)
T ss_dssp CHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC----CCSSHHHHHHHHTTSC
T ss_pred CHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc----CcccCcHHHHHHHHhc
Confidence 99999999999 99999998777777799999999999 48999999999999999876 68999865 555554
Q ss_pred CCccccCCCCCcCCCCcCCCCCCCCChhHHHHHHhhcCCCCCCcCcCCCcHHHHHHHHccchhHHHHhhhcCCCCCCCCC
Q 011155 184 LPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263 (492)
Q Consensus 184 ~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p 263 (492)
+..+..++|. |...|. +. ++..+ | . ....++|||++|+++| + |+++++.+| ++||.|
T Consensus 152 ~~~p~~~~~~--~~~~~~---p~--~~~~l-p---~------~~~~~~~Ge~~A~~~L----~-Fl~~~l~~Y-~~rd~p 208 (440)
T 2e0i_A 152 VREPETMEGS--FDVTDS---SM--NVDFL-L---T------FKKIESPLFRGGRREG----L-YLLHRNVDF-RRRDYP 208 (440)
T ss_dssp CCCCCCCCCC--BCCCSS---SB--CGGGG-G---G------TCCCCCTTCCCSHHHH----H-HHHTCCCCG-GGTTCT
T ss_pred ccccccCCCC--cccCCC---cc--hhhhC-C---c------cccCCCCCHHHHHHHH----H-HHHhhhhcC-CcCCCc
Confidence 2210111111 111111 11 11111 1 1 1124689999999999 9 999999999 999999
Q ss_pred CCCCCCCcccccccCCCCCHHHHHHHHHHHhhhCCccHHHHHHHhHhHHHHHHHHHHhCCCCccccc-----chhHHHHh
Q 011155 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG-----AWEWARKS 338 (492)
Q Consensus 264 ~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~-----~~~w~~~~ 338 (492)
+. ++||+|||||+||+||||+|++++ ++.++|++||+|| |||+++++++|++..... .++|.
T Consensus 209 ~~-~~tS~LSPyL~~G~lSpr~v~~~~--------~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~~~~~~~~~l~W~--- 275 (440)
T 2e0i_A 209 AE-NNNYRLSPHLKFGTISMREAYYTQ--------KGKEEFVRELYWR-DFFTLLAYYNPHVFGHCYRREYDNISWE--- 275 (440)
T ss_dssp TT-TCCCCCHHHHHTTSSCHHHHHHHS--------TTCHHHHHHHHHH-HHHHHHHHHCGGGTTSCSSGGGGGCCCC---
T ss_pred cc-cCCCCccHhHhCCCCCHHHHHHHh--------cCHHHHHHHHHHH-HHHHHHHHhCCCccccccchhhhcCCcc---
Confidence 87 999999999999999999999988 3578999999988 999999999999765321 22343
Q ss_pred hhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----cCc-cCCCccHHHHHHHHHHHhhhcc
Q 011155 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYE 413 (492)
Q Consensus 339 l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idW~~G~~~a~~~~~~f~~~yl 413 (492)
.|++ .|++|++|+|||||||||||||++|||||||+||||| |+| |||+.|++ ||+++ |
T Consensus 276 -----~d~~----~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~-------~F~~~-l 338 (440)
T 2e0i_A 276 -----NNES----YFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGER-------YFATK-L 338 (440)
T ss_dssp -----CCHH----HHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH-------HHHHH-C
T ss_pred -----cchH----HHHHHHhCCCCCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHH-------HHHHH-c
Confidence 2432 4999999999999999999999999999999999999 899 99999999 99998 8
Q ss_pred ccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhhcCCCccccccccc
Q 011155 414 IDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGTKKRRADSLVS 484 (492)
Q Consensus 414 iD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL~~~~~~~~~~~~~ 484 (492)
||||+|||+|||||+|| |+| +|| |||||++|++||||+| |||+|||||+++|+++||.||.
T Consensus 339 lD~d~a~n~g~wqw~aG~g~d-------~~~---RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~ 401 (440)
T 2e0i_A 339 VDYDPAINNGNWQWIASTGVD-------YMF---RVFNPWKQQEKFDPEAKFIKEWVEELKDVPPSIIHSIYK 401 (440)
T ss_dssp TTCCHHHHHHHHHHHTTSSSC-------CSC---CCCCHHHHHHHHCTTCHHHHHHCGGGGGSCHHHHTTTTT
T ss_pred ccCCccccHHHHHHHhCcCCC-------CCC---CccCHHHHHHHhCCCcHhHHHhCHHhhccCcccccCchh
Confidence 99999999999999995 555 288 9999999999999998 9999999999999999999995
No 9
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=8.7e-95 Score=770.84 Aligned_cols=412 Identities=17% Similarity=0.174 Sum_probs=335.2
Q ss_pred CcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc--------ccchhHHHHHHHHHHHHHHHHHhhcCCc
Q 011155 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL--------GAKARQLGFMLRGLRLLQRNIEETFQIL 100 (492)
Q Consensus 29 ~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~--------~~~~~r~~Fl~esL~~L~~~L~~~lG~~ 100 (492)
+++|||||||||++||+||.+|++ .+.+|+||||+||.++ ..+++|++||++||++|+++| +++|++
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~ 80 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESL-QKVGNK 80 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHH-HHTTCC
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHH-HHCCCc
Confidence 468999999999999999999987 4568999999999754 368999999999999999999 999999
Q ss_pred EEEEeCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEEeCceeEeCcccc--cCCCCccccch
Q 011155 101 FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--EKLEYSAKTLR 177 (492)
Q Consensus 101 L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~-~~v~~~~~~~~~l~~~~~~~--~~~~~~~~t~~ 177 (492)
|+++.|++.++|.+|+++++|++|+++.++...++.||++|+++|. .||+++++++++|++++.+. .+++|.+||+|
T Consensus 81 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F 160 (489)
T 1np7_A 81 LLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKF 160 (489)
T ss_dssp EEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHH
T ss_pred EEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHH
Confidence 9999999999999999999999999988887888899999999994 79999999999999998653 46789999866
Q ss_pred -HHHH-hhCCccccCCCCCcCCCCcCCCCCCCCChhHHHHHHhhcCC---CCCCcCcCCCcHHHHHHHHccchhHHH--H
Q 011155 178 -GKIN-KLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA---EVPEIGWCESGEDAAMEVLKGSKDGFL--T 250 (492)
Q Consensus 178 -~~~~-~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~gGe~~A~~~L~~~~~~Fl--~ 250 (492)
+++. +... ...|.|. |...+.. +..+.... +|.+..++. .......++|||++|+++| ++|+ +
T Consensus 161 ~~~~~~~~~~-~~~p~~~--p~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~ 230 (489)
T 1np7_A 161 RKDIEKKKIS-IRPCFFA--PSQLLPS--PNIKLELT-APPPEFFPQINFDHRSVLAFQGGETAGLARL----QDYFWHG 230 (489)
T ss_dssp HHHHHTTTCC-CCCCCCC--CSCCCCC--CCCCCCCC-CCCGGGSCCCCCCTTSSCCCCCSHHHHHHHH----HHHHTTS
T ss_pred HHHHHHhccC-CCCCCCC--cccccCc--cccccccC-CCCHhhcCCCCcCccccCCCCCcHHHHHHHH----HHHHhcc
Confidence 4555 4331 1122222 1111110 00000000 011212221 1112235899999999999 9999 5
Q ss_pred hhhcCCCCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHhhh--CCccHHHHHHHhHhHHHHHHHHHHhCCCCccc
Q 011155 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328 (492)
Q Consensus 251 ~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~--~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~ 328 (492)
+++.+|+++||.|...++||+|||||+||+||||+|++++.+.... ..++.+.|++||+|| |||+++++++|++...
T Consensus 231 ~~l~~Y~~~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~~~~~~~p~~~~~ 309 (489)
T 1np7_A 231 DRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWR-DFFRFVAQKYGNKLFN 309 (489)
T ss_dssp CCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-HHHHHHHHHHGGGGGS
T ss_pred hhHhhhhhcccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHHH-HHHHHHHHHCcchhhh
Confidence 7899999999977433899999999999999999999999874332 234567799999998 9999999888887532
Q ss_pred cc-----chhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----cCc-cCCCccH
Q 011155 329 KG-----AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGP 398 (492)
Q Consensus 329 ~~-----~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idW~~G~ 398 (492)
.. .++|. .|++ .|++|++|+|||||||||||||++|||||||+||||| |+| |||+.|+
T Consensus 310 ~~~~~~~~~~W~--------~d~~----~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~ 377 (489)
T 1np7_A 310 RGGLLNKNFPWQ--------EDQV----RFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGA 377 (489)
T ss_dssp TTTTTTCCCCCB--------CCHH----HHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hcCcccccCCCc--------cCHH----HHHHHHcCCCCChhHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCChhHH
Confidence 21 12453 2332 5999999999999999999999999999999999998 788 9999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhhcCCCc
Q 011155 399 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGTKK 476 (492)
Q Consensus 399 ~~a~~~~~~f~~~yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL~~~~~ 476 (492)
+ ||+++ |||||++||+|||||+|| |+|+ + || |||||++|++||||+| |||+|||||+++|+
T Consensus 378 ~-------~F~~~-LiD~D~a~N~g~wqw~ag~g~d~-----~-~~---RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~ 440 (489)
T 1np7_A 378 E-------WFESC-LIDYDVCSNWGNWNYTAGIGNDA-----R-DF---RYFNIPKQSQQYDPQGTYLRHWLPELKNLPG 440 (489)
T ss_dssp H-------HHHHH-CTTCCHHHHHHHHHHHHTSSCCT-----T-SC---CCCCHHHHHHHHSTTSHHHHHHCGGGTTCCS
T ss_pred H-------HHHHH-hcccChhcChHhhhhhhccCCCc-----c-cc---cccCHHHHhhhcCCCCccHHHhCHHhhccCc
Confidence 9 99999 899999999999999985 6664 3 68 9999999999999998 99999999999999
Q ss_pred ccccccccC
Q 011155 477 RRADSLVSG 485 (492)
Q Consensus 477 ~~~~~~~~~ 485 (492)
++||.||.-
T Consensus 441 ~~ih~pw~~ 449 (489)
T 1np7_A 441 DKIHQPWLL 449 (489)
T ss_dssp GGGGCGGGC
T ss_pred ccccCCccC
Confidence 999999964
No 10
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=3.2e-94 Score=773.68 Aligned_cols=423 Identities=17% Similarity=0.170 Sum_probs=338.5
Q ss_pred cEEEEEeCCCCccCCHHHHHHHHHhhh--CCCCEEEEEEecCCccc---cchhHHHHHHHHHHHHHHHHHhhcCCcEEEE
Q 011155 30 PVVYWMFRDQRVRDNWALIHAVDQANK--NNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLF 104 (492)
Q Consensus 30 ~~l~WfRrDLRl~DN~aL~~A~~~a~~--~~~~v~~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~ 104 (492)
.+|||||||||++||+||.+|++.+.. .+.||+||||+||.++. .+.+|++||++||++|+++| +++|++|+++
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~L~v~ 108 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQL-RKLNSRLFVV 108 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHH-HHTTCCCEEE
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEE
Confidence 459999999999999999999986544 35569999999998764 78999999999999999999 9999999999
Q ss_pred eCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEEeCceeEeCcc-c--ccCCCCccccchHHH
Q 011155 105 QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWV-A--SEKLEYSAKTLRGKI 180 (492)
Q Consensus 105 ~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~-~~v~~~~~~~~~l~~~~~-~--~~~~~~~~~t~~~~~ 180 (492)
.|++.++|.+|+++++|++|+++.++...++.+|+.|+++|. .||+++++++++|++++. + ..+.+|.+||+|.+.
T Consensus 109 ~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~~ 188 (543)
T 2wq7_A 109 RGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGI 188 (543)
T ss_dssp ESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHHHHHHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHHHHHHH
Confidence 999999999999999999999986655666889999999994 799999999999999986 3 346788999876433
Q ss_pred HhhCCccccCCCCCcCCCCcCCCCCCCCChh------HHHHHHhhcCCC--CCCcCcCCCcHHHHHHHHccchhHHHHhh
Q 011155 181 NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD------SIIAAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDGFLTKR 252 (492)
Q Consensus 181 ~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~ 252 (492)
...+.... |.+. |...+....+...+.. ..+|.+..++.. ......|+|||++|+++| ++|++++
T Consensus 189 ~~~~~~~~-p~~~--p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~ 261 (543)
T 2wq7_A 189 VEQLKVPK-VLGV--PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM----EESLKDE 261 (543)
T ss_dssp HTTSCCCC-CCCC--CCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGGGCCCCCSCCSHHHHHHHH----HHHHTCH
T ss_pred HHHccCCC-CCCc--chhccccccccccccccccccccCCCCHHHcCCCccccccCCCCCCHHHHHHHH----HHHHhCC
Confidence 33232111 2221 1111100000000000 000111122211 111234799999999999 9999999
Q ss_pred --hcCCCCCCCCCCC-CCCCCcccccccCCCCCHHHHHHHHHHHhhh---CCccHHHHHHHhHhHHHHHHHHHHhCCCCc
Q 011155 253 --LKNYPTDRNNPLK-PRALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFLEELIVRRELADNFCFYQPNYD 326 (492)
Q Consensus 253 --l~~Y~~~Rd~p~~-~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~---~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~ 326 (492)
+.+|+++||.|+. .++||+|||||+||+||||+|++++.+.... ..++.+.|++||+|| |||+++++++|++.
T Consensus 262 ~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~f~~eL~WR-Ef~~~~~~~~P~~~ 340 (543)
T 2wq7_A 262 IWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWR-EFYYTVAAAEPNFD 340 (543)
T ss_dssp HHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHH-HHHHHHHHTCTTTT
T ss_pred hhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccccccccHHHHHHHHHHH-HHHHHHHHhCCccc
Confidence 9999999999973 3899999999999999999999999875432 345678899999998 99999999999987
Q ss_pred ccccchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----c-Cc-cCCCccHHH
Q 011155 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----K-KI-LEWTTGPEE 400 (492)
Q Consensus 327 ~~~~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k-~L-idW~~G~~~ 400 (492)
..+..+.|..-... .+. ..|++|++|+|||||||||||||++|||||||+||||| | +| |||+.|++
T Consensus 341 ~~~~~~~~~~~~w~---~~~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G~~- 412 (543)
T 2wq7_A 341 RMLGNVYCMQIPWQ---EHP----DHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQR- 412 (543)
T ss_dssp SSTTCTTCCCCCCC---CCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHH-
T ss_pred cccCChHhhcCCCc---cCH----HHHHHHHcCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCCCCchHHH-
Confidence 65443322211000 122 25999999999999999999999999999999999998 8 88 99999998
Q ss_pred HHHHHHHHhhhccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhhcCCCccc
Q 011155 401 ALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGTKKRR 478 (492)
Q Consensus 401 a~~~~~~f~~~yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL~~~~~~~ 478 (492)
||+++ |||||+|||+|||||+|| |+|+ + || |||||++|++||||+| |||+|||||+++|+++
T Consensus 413 ------~F~~~-LiD~D~a~n~g~Wqw~aG~g~D~-----~-~~---RifNP~~q~~kfDp~g~yIr~wvPEL~~~p~~~ 476 (543)
T 2wq7_A 413 ------VFEQL-LLDQDWALNAGNWMWLSASAFFH-----Q-YF---RVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGC 476 (543)
T ss_dssp ------HHHHH-CTTCCHHHHHHHHHHHTTSSSCC-----C-TT---CCCCTTTGGGGTCTTCHHHHHHSGGGTTSCHHH
T ss_pred ------HHHHH-hccCCcccCHHHHHHHhcCCCcC-----c-cc---cccCHHHHhhhcCCCchhHHHhCHHhhcccccc
Confidence 99998 899999999999999996 6664 2 88 9999999999999998 9999999999999999
Q ss_pred ccccccC
Q 011155 479 ADSLVSG 485 (492)
Q Consensus 479 ~~~~~~~ 485 (492)
||.||.-
T Consensus 477 ih~Pw~~ 483 (543)
T 2wq7_A 477 IYEPWKA 483 (543)
T ss_dssp HTSGGGS
T ss_pred ccCcccC
Confidence 9999953
No 11
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=1.6e-93 Score=746.30 Aligned_cols=386 Identities=22% Similarity=0.278 Sum_probs=322.9
Q ss_pred cEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEEEeCChh
Q 011155 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAE 109 (492)
Q Consensus 30 ~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~G~~~ 109 (492)
.+|||||||||++||+||.+|++ .+ +|+||||+||.++..+.+|++||++||++|+++| +++|++|+++.|++.
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~----~~-~v~~vfi~d~~~~~~~~~r~~fl~~sL~~l~~~L-~~~g~~l~~~~g~~~ 76 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALA----RG-PVVGLVVLDPNNLKTTPRRRAWFLENVRALREAY-RARGGALWVLEGLPW 76 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHT----TS-CEEEEEEECHHHHSSCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEESCHH
T ss_pred eEEEEeCCCCCccccHHHHHHHh----CC-CEEEEEEECCccccCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEeCCHH
Confidence 58999999999999999999985 34 9999999999755338999999999999999999 999999999999999
Q ss_pred chHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEEeCceeEeCcccccCCCCccccchHHHHhhCCcccc
Q 011155 110 DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189 (492)
Q Consensus 110 ~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~~~v~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 189 (492)
++|.+|+++++|+.|+++.++...++.+|++|+++| ||+++++++++|++++. |.+|.+||+|.+....+. .
T Consensus 77 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l--~i~~~~~~~~~l~~~~~---~~~~~~~t~f~k~~~~~~---~ 148 (420)
T 2j07_A 77 EKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL--PVPLHLLPAPHLLPPDL---PRAYRVYTPFSRLYRGAA---P 148 (420)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC--SSCEEEECCCCSSCTTC---SSCCSSHHHHHTTCCCCC---C
T ss_pred HHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc--CCeEEEeCCCEEEccCC---CCccccccHHHHHHhhcc---C
Confidence 999999999999999998777777789999999999 99999999999999987 788999997754222211 1
Q ss_pred CCCCCcCCCCcCCCCCCCCChhHHHHHHhhcCCCCCCcCcCCCcHHHHHHHHccchhHHHHhhhcCCCCCCCCCCCCCCC
Q 011155 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269 (492)
Q Consensus 190 ~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~t 269 (492)
|.+. |...+. + ++...+ + . ... ....++|||++|+++| ++|+++++.+|+++||.|+. ++|
T Consensus 149 p~~~--p~~~~~---p--~~~~~l-~---~--~~~-~~~~~~~Ge~~A~~~L----~~Fl~~~l~~Y~~~rd~p~~-~~t 209 (420)
T 2j07_A 149 PLPP--PEALPK---G--PEEGEI-P---R--EDP-GLPLPEPGEEAALAGL----RAFLEAKLPRYAEERDRLDG-EGG 209 (420)
T ss_dssp CCCC--CSSCCC---C--CCCCCC-C---C--CCC-SSCCCCCSHHHHHHHH----HHHHHHTGGGHHHHTTCTTC-TTS
T ss_pred CCCC--ccccCC---C--CccccC-C---C--ccc-ccccCCCcHHHHHHHH----HHHHHHHHhhhhhccCCCCc-cCC
Confidence 2221 111110 0 111001 1 1 011 1235799999999999 99999999999999999998 999
Q ss_pred CcccccccCCCCCHHHHHHHHHHHhhhCCccHHHHHHHhHhHHHHHHHHHHhCCCCcccccchhHHHHhhhhhccChhhh
Q 011155 270 SGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349 (492)
Q Consensus 270 S~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~~~~w~~~~l~~~~~d~~~~ 349 (492)
|+|||||+||+||||+|++++.+.. .++.++|++||+|| ||++++++++|++...... ++.. .+ ....|++
T Consensus 210 S~LSpyL~~G~lSpr~v~~~~~~~~---~~~~~~f~~eL~WR-Ef~~~~~~~~p~~~~~~~~-~~~~-~l-~w~~d~~-- 280 (420)
T 2j07_A 210 SRLSPYFALGVLSPRLAAWEAERRG---GEGARKWVAELLWR-DFSYHLLYHFPWMAERPLD-PRFQ-AF-PWQEDEA-- 280 (420)
T ss_dssp CCCHHHHHTTSSCHHHHHHHHHHHC---SHHHHHHHHHHHHH-HHHHHHHHHCGGGGTSCSS-GGGT-TC-CCCCCHH--
T ss_pred CCcchhhcCCccCHHHHHHHHHHHh---ccCHHHHHHHHHHH-HHHHHHHHhCCcccccccc-hhhh-cC-CcccCHH--
Confidence 9999999999999999999998754 45788999999987 9999999999997543211 1111 11 0112432
Q ss_pred hhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----cCc-cCCCccHHHHHHHHHHHhhhccccCCCCCCCcC
Q 011155 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVG 424 (492)
Q Consensus 350 ~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idW~~G~~~a~~~~~~f~~~yliD~d~a~n~~~ 424 (492)
.|++|++|+|||||||||||||++|||||||+||||| |+| |||+.|++ ||+++ |||||+|||+||
T Consensus 281 --~~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~-------~F~~~-llD~d~a~n~g~ 350 (420)
T 2j07_A 281 --LFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEE-------AFRHL-LLDGDRAVNLQG 350 (420)
T ss_dssp --HHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH-------HHHHH-CTTCCHHHHHHH
T ss_pred --HHHHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHH-------HHHHH-hhcCCccccHHH
Confidence 5999999999999999999999999999999999999 899 99999998 99999 899999999999
Q ss_pred ceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhhcCCC
Q 011155 425 CMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGTK 475 (492)
Q Consensus 425 wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL~~~~ 475 (492)
|||+|| |+|+ +||| |||||++|++||||+| |||+|||||+++|
T Consensus 351 wqw~aG~g~d~-----~pyf---R~fNp~~q~~kfDp~g~yir~w~pel~~~p 395 (420)
T 2j07_A 351 WQWAGGLGVDA-----APYF---RVFNPVLQGERHDPEGRWLKRWAPEYPSYA 395 (420)
T ss_dssp HHHHTTSSGGG-----CCTT---CCCCHHHHHHHHSTTSHHHHHHCTTCSSSS
T ss_pred HHHHHccCCCC-----CCCc---eeeCHHHHHHHhCCCchhHHHhChhhcCCC
Confidence 999995 6664 6999 9999999999999998 9999999999988
No 12
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=1.1e-93 Score=766.74 Aligned_cols=411 Identities=20% Similarity=0.228 Sum_probs=333.1
Q ss_pred CCcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc---------ccchhHHHHHHHHHHHHHHHHHhhcC
Q 011155 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---------GAKARQLGFMLRGLRLLQRNIEETFQ 98 (492)
Q Consensus 28 ~~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~---------~~~~~r~~Fl~esL~~L~~~L~~~lG 98 (492)
++++|||||||||++||+||.+|++ .+.+|+||||+||.++ ..+.+|++||++||++|+++| +++|
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G 113 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWS----SSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNL-MKRG 113 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHH----TCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred CCeEEEEeCCCcCcchhHHHHHHHh----cCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHH-HHcC
Confidence 4678999999999999999999987 3568999999999754 358899999999999999999 9999
Q ss_pred CcEEEEeCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhc-CC--CeEEEEeCceeEeCcccc--cCCCCcc
Q 011155 99 ILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DS--VTIHEVDAHNVVPVWVAS--EKLEYSA 173 (492)
Q Consensus 99 ~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~-~~--v~~~~~~~~~l~~~~~~~--~~~~~~~ 173 (492)
++|+++.|++.++|.+|+++++|++|+++.++...++.+|++|+++|. .| |+++++++++|++|+.+. .+++|.+
T Consensus 114 ~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~v 193 (525)
T 2j4d_A 114 LNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDV 193 (525)
T ss_dssp CCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSS
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCccc
Confidence 999999999999999999999999999988887788999999999994 78 899999999999998653 3577888
Q ss_pred ccch-HHHHhhCCccccCCCCCcCCCCcCCCCCCCCChhHHHHHHhhcCCC---CCCcCcCCCcHHHHHHHHccchhHHH
Q 011155 174 KTLR-GKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE---VPEIGWCESGEDAAMEVLKGSKDGFL 249 (492)
Q Consensus 174 ~t~~-~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gGe~~A~~~L~~~~~~Fl 249 (492)
||+| +++.+.+. ...|+|. |...+.. +..++...+ +.+.+++.. ......|+|||++|+++| ++|+
T Consensus 194 ft~F~r~~~~~~~-~~~p~~~--p~~~~~~--~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl 263 (525)
T 2j4d_A 194 YTQFRKSVEAKCS-IRSSTRI--PLSLGPT--PSVDDWGDV-PTLEKLGVEPQEVTRGMRFVGGESAGVGRV----FEYF 263 (525)
T ss_dssp HHHHHHHHHHHCC-CCCCCCB--CSCCCCC--CCCSCCCCC-CCTTTTTCCCCCCCSEEEECCSHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHhcC-CCCCCCC--ccccCCc--cccccccCC-CCHHHcCCCcccccccCCCCCcHHHHHHHH----HHHH
Confidence 8765 56666542 2222222 1111110 000011000 111112111 111124799999999999 9999
Q ss_pred -H-hhhcCCCCCCCCC-CCCCCCCcccccccCCCCCHHHHHHHHHHHhhh--CCccHHHHHHHhHhHHHHHHHHHHhC-C
Q 011155 250 -T-KRLKNYPTDRNNP-LKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFYQ-P 323 (492)
Q Consensus 250 -~-~~l~~Y~~~Rd~p-~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~--~~~~~~~fi~eL~wRrEf~~~~~~~~-p 323 (492)
+ +++.+|+++||.| +. ++||+|||||+|||||||+|++++.++... ..++.+.|++||+|| |||+++++++ |
T Consensus 264 ~~~~~l~~Y~~~Rd~~~~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~f~~EL~WR-Ef~~~~~~~~~~ 341 (525)
T 2j4d_A 264 WKKDLLKVYKETRNGMLGP-DYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWR-DYFRFLSIKCGN 341 (525)
T ss_dssp TTSCCGGGHHHHTTCCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-HHHHHHHHHHGG
T ss_pred hhCchHhhhcccCCCcccc-ccCCCcChhhcCCcCCHHHHHHHHHHHhhcccccccHHHHHHHHHHH-HHHHHHHHHcCc
Confidence 6 5799999999986 56 899999999999999999999999875433 234567899999998 9999987654 6
Q ss_pred CCcccccch----hHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHh----cCc-cCC
Q 011155 324 NYDSLKGAW----EWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEW 394 (492)
Q Consensus 324 ~~~~~~~~~----~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idW 394 (492)
.+....+.. +|. .+. +.|++|++|+|||||||||||||++|||||||+||||| |+| |||
T Consensus 342 ~~~~~~~~~~~~~~w~--------~~~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idW 409 (525)
T 2j4d_A 342 SLFHLGGPRNVQGKWS--------QDQ----KLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDW 409 (525)
T ss_dssp GGTSTTTTTTCCCCCB--------CCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCH
T ss_pred hhhhccCchhhcCCCC--------CCH----HHHHHHHcCCCCChHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCc
Confidence 554433322 232 222 36999999999999999999999999999999999998 788 999
Q ss_pred CccHHHHHHHHHHHhhhccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchhhhcCCchh-HHHhhhhhhc
Q 011155 395 TTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVG 472 (492)
Q Consensus 395 ~~G~~~a~~~~~~f~~~yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~-yir~wvPeL~ 472 (492)
+.|++ ||+++ |||||+|||+|||||+|| |+|+ +| | |||||++|+++|||+| |||||||||+
T Consensus 410 r~G~~-------~F~~~-LiD~D~a~n~g~WQw~aG~g~D~-----~~-~---RifNP~~q~kk~Dp~G~YIrrwvPEL~ 472 (525)
T 2j4d_A 410 RMGAE-------WFETC-LLDYDPCSNYGNWTYGAGVGNDP-----RE-D---RYFSIPKQAQNYDPEGEYVAFWLQQLR 472 (525)
T ss_dssp HHHHH-------HHHHH-CTTCCHHHHHHHHHHHHTCSSCG-----GG-C---CCCCHHHHHHHHCTTCHHHHHHSGGGT
T ss_pred HHHHH-------HHHHh-ccccchhcChHHHHhhcCCCCCc-----cc-c---ccCCHHHHhhhcCCCchhHHHhChhhh
Confidence 99999 99999 899999999999999995 6665 45 7 9999999999999998 9999999999
Q ss_pred CCCccccccccc
Q 011155 473 GTKKRRADSLVS 484 (492)
Q Consensus 473 ~~~~~~~~~~~~ 484 (492)
++|+++||.||.
T Consensus 473 ~~p~~~ih~Pw~ 484 (525)
T 2j4d_A 473 RLPKEKRHWPGR 484 (525)
T ss_dssp TSCTTTTTSCHH
T ss_pred cCChhcccCCcc
Confidence 999999999995
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2e-61 Score=506.12 Aligned_cols=391 Identities=13% Similarity=0.117 Sum_probs=295.4
Q ss_pred cEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCc----cccchhHHHHHHHHHHHHHHHHHhhcCCcEEEEe
Q 011155 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF----LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ 105 (492)
Q Consensus 30 ~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~----~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~ 105 (492)
+++.|.--|.--.++++|..+- .+.. +|.+.+... ...+.+|+.|++.||++|+++| ++.|.+|+++.
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~~-----~~~~--~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L-~~~G~~v~y~~ 87 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAAD-----PAAD--LVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRL-QERGFRVAYSR 87 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTCC-----TTTC--EEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEC
T ss_pred heeEEeecccCCCccchhhhcC-----CCCC--EEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEe
Confidence 4688999999999998876431 1221 244444322 2468899999999999999999 99999999998
Q ss_pred -------CChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEEeCc-eeEeCcccc----cCCCCcc
Q 011155 106 -------GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAH-NVVPVWVAS----EKLEYSA 173 (492)
Q Consensus 106 -------G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~~~v~~~~~~~~-~l~~~~~~~----~~~~~~~ 173 (492)
|++.++|.+++++++++.|++. +|.+ +.+++.|+++ ||+++.+++. .|++++.+. .+++|.+
T Consensus 88 ~~~~~~~g~~~~~L~~l~~~~~~~~v~~~-~P~e--~r~~~~l~~~---gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~m 161 (522)
T 3zxs_A 88 LDDPDTGPSIGAELLRRAAETGAREAVAT-RPGD--WRLIEALEAM---PLPVRFLPDDRFLCPADEFARWTEGRKQLRM 161 (522)
T ss_dssp TTCTTCCSSHHHHHHHHHHHHTCCCEEEE-CCSC--HHHHHHHHHS---SSCEEEECCCCSSSCHHHHHHHHTTCSSCCH
T ss_pred ccCccccCCHHHHHHHHHHHcCCCEEEEe-Ccch--HHHHHHHHHc---CCcEEEeCCCCcccCHHHHHHhhcCCCCeEe
Confidence 8899999999999999999998 6777 5678888754 8999999986 677887653 4788999
Q ss_pred ccchHHHHhhCCcccc-----------------CCCCCcCCCCcCCCCCCCCC--hhHHHHHHhhc-CC---CCCCcCcC
Q 011155 174 KTLRGKINKLLPEYLI-----------------DYPMLEQPIEKWTGTRQSID--WDSIIAAVLRK-GA---EVPEIGWC 230 (492)
Q Consensus 174 ~t~~~~~~~~~~~~~~-----------------~~~~~~p~~~p~~~~~~~~~--~~~~~~~~~~~-~~---~~~~~~~~ 230 (492)
+.||+.++++....|. +.|.. ...|....+ ..| ..++++.+... .. .+ ....|
T Consensus 162 e~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~--~~~p~~~~~-~~d~~~~~v~~~v~~~~~~~~G~~-~~~~~ 237 (522)
T 3zxs_A 162 EWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPD--LLRPRPLRF-EPDAEVRAVLDLVEARFPRHFGRL-RPFHW 237 (522)
T ss_dssp HHHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCC--TTCCCCCCC-CCCHHHHHHHHHHHHHCTTSSSCC-CSCCC
T ss_pred eHHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCC--CCCCCCCCC-CCchhHHHHHHHHHHhccCCcCcc-ccCCC
Confidence 8888888877544333 11111 111110000 011 12233333211 11 11 22468
Q ss_pred CCcHHHHHHHHccchhHHHHhhhcCCCCCCCCCCCCC----CCCcccccccCCCCCHHHHHHHHHHHhhhC---CccHHH
Q 011155 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR----ALSGLSPYLHFGQISAQRCALEARKARKLC---PEAIDT 303 (492)
Q Consensus 231 ~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~----~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~---~~~~~~ 303 (492)
++||.+|+++| ++|+++++.+|+..||.|+. + +||+|||||++|+||||+|++++.++.... .+++++
T Consensus 238 ~~ge~~A~~~L----~~Fl~~rl~~Y~~~rD~~~~-~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~~~~~~~e~ 312 (522)
T 3zxs_A 238 ATDRAEALRAL----DHFIRESLPRFGDEQDAMLA-DDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRAPLNAVEG 312 (522)
T ss_dssp CCSHHHHHHHH----HHHHHHTGGGTTTTTTCCBT-TBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred CCCHHHHHHHH----HHHHHhhhhhhhhhccCccc-CCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcCCchhhHHH
Confidence 99999999999 99999999999999999976 4 699999999999999999999998765432 246789
Q ss_pred HHHHhH-hHHHHHHHHHHhC-CCCcccccchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccch
Q 011155 304 FLEELI-VRRELADNFCFYQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHG 381 (492)
Q Consensus 304 fi~eL~-wRrEf~~~~~~~~-p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhn 381 (492)
|++||+ || ||++++++++ |++...+. |.. .++ ..++|++|+|||||||||||||++||||||
T Consensus 313 firellgWR-EF~~~l~~~~~P~~~~~n~---~~~-------~~~-----l~~~~w~G~TG~P~VDA~MRqL~~TGwmHn 376 (522)
T 3zxs_A 313 FIRQILGWR-EYVRGIWTLSGPDYIRSNG---LGH-------SAA-----LPPLYWGKPTRMACLSAAVAQTRDLAYAHH 376 (522)
T ss_dssp HHHHHHTHH-HHHHHHHHHHGGGGGGCCT---TCC-------CBC-----CCGGGGTCCCSCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHH-HHHHHHHHHhCcccccccc---ccc-------ccc-----chHHHhcCCCCCHHHHHHHHHHHHHhchhH
Confidence 999997 87 9999998764 87754321 210 111 124456999999999999999999999999
Q ss_pred HHHHHHh----cCc-cCCCccHHHHHHHHHHHhhhccccC----CCCCCCcCceEeecccCCCCCCCCCCcCcccccCcc
Q 011155 382 FMRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYEIDG----RDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYS 452 (492)
Q Consensus 382 r~Rm~va----k~L-idW~~G~~~a~~~~~~f~~~yliD~----d~a~n~~~wqw~a~G~~~~g~~~~pyfg~~R~~np~ 452 (492)
|+||||| |+| |||+.|++ ||+++ |||| ..||++|||||++||+.+ +|||+
T Consensus 377 r~RmmVasfl~k~L~idWr~G~~-------wF~~~-LiD~~~Wv~~~N~~Gm~q~a~Gg~~~----~KPY~--------- 435 (522)
T 3zxs_A 377 IQRLMVTGNFALLAGVDPAEVHE-------WYLSV-YIDALEWVEAPNTIGMSQFADHGLLG----SKPYV--------- 435 (522)
T ss_dssp HHHHHTHHHHHHHTTBCHHHHHH-------HHHHH-CTTCCHHHHHHHHHTTTTCCSSSTTC----SSCCC---------
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-------HHHHH-hcchhhhhhccccccchheecCCccC----CCCCC---------
Confidence 9999998 778 99999999 99999 8999 468999999999987665 68988
Q ss_pred hhhhcCCchh-HHHhhhhhhcCCCcccccccccCCccccc
Q 011155 453 GCKRKFDVDG-YIAYVKRIVGGTKKRRADSLVSGKEKELC 491 (492)
Q Consensus 453 ~q~~k~Dp~~-yir~wvPeL~~~~~~~~~~~~~~~~~~~~ 491 (492)
..+ ||+|+ ++++..-...++.+....+|
T Consensus 436 -------~~~~yI~km----s~yc~~c~y~~~~~~g~~~c 464 (522)
T 3zxs_A 436 -------SSGAYIDRM----SDYCRGCAYAVKDRTGPRAC 464 (522)
T ss_dssp -------CCHHHHHHH----CSCGGGSSSBTTCSSSTTBC
T ss_pred -------CchHHHHHH----hccccCCccCccccCCCccC
Confidence 555 88888 57777777777766656666
No 14
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=92.65 E-value=0.71 Score=38.85 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcccc-c---------hhHHHHHHHHHHHHHHHHHhhcCC---cEEEE
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA-K---------ARQLGFMLRGLRLLQRNIEETFQI---LFFLF 104 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~-~---------~~r~~Fl~esL~~L~~~L~~~lG~---~L~v~ 104 (492)
|.--....+|..|+..|...+.+|..+++.++..... . .....-..+.|+.+.+.+ .+.|+ ...+.
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~ 91 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFV-ATTSAPNLKTEIS 91 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSCCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HhcCCcceEEEEe
Confidence 4444456788888888887788999999998753211 0 122334556677778888 77777 56778
Q ss_pred eCChhchHHH-HHHHhCCCEEEE
Q 011155 105 QGEAEDNIPN-FVRECGASLLVT 126 (492)
Q Consensus 105 ~G~~~~~l~~-l~~~~~~~~V~~ 126 (492)
.|++.+.|.+ .+++.+++-|++
T Consensus 92 ~g~~~~~I~~~~a~~~~~dliV~ 114 (146)
T 3s3t_A 92 YGIPKHTIEDYAKQHPEIDLIVL 114 (146)
T ss_dssp EECHHHHHHHHHHHSTTCCEEEE
T ss_pred cCChHHHHHHHHHhhcCCCEEEE
Confidence 8999999998 999999999998
No 15
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=92.41 E-value=0.89 Score=39.20 Aligned_cols=87 Identities=23% Similarity=0.100 Sum_probs=65.6
Q ss_pred CC-CccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEE----EeCChhchH
Q 011155 38 DQ-RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFL----FQGEAEDNI 112 (492)
Q Consensus 38 DL-Rl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v----~~G~~~~~l 112 (492)
|. --....+|..|+..|...+.+|..|++.++.... ......-..+.|+.+.+.+ ++.|+++.+ ..|++.+.|
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~v~~G~~~~~I 109 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-KDEDIIEAKETLSWAVSII-RKEGAEGEEHLLVRGKEPPDDI 109 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-CHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEEESSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-cHHHHHHHHHHHHHHHHHH-HhcCCCceEEEEecCCCHHHHH
Confidence 55 4555678888888888778899999999864221 1233344567788888888 888887653 348999999
Q ss_pred HHHHHHhCCCEEEE
Q 011155 113 PNFVRECGASLLVT 126 (492)
Q Consensus 113 ~~l~~~~~~~~V~~ 126 (492)
.+.+++.+++-|++
T Consensus 110 ~~~a~~~~~DLIV~ 123 (155)
T 3dlo_A 110 VDFADEVDAIAIVI 123 (155)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999998
No 16
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=91.78 E-value=1.2 Score=37.12 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCccc--c-------chhHHHHHHHHHHHHHHHHHhhcCC-----cEEEEeCCh
Q 011155 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLG--A-------KARQLGFMLRGLRLLQRNIEETFQI-----LFFLFQGEA 108 (492)
Q Consensus 43 DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~--~-------~~~r~~Fl~esL~~L~~~L~~~lG~-----~L~v~~G~~ 108 (492)
...+|..|+..|...+.+|..+++.++.... . ........-+.++.|++-+ ++.|+ ...+..|++
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~v~~~~~~g~~ 94 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIA-KKFSIPEDRMHFHVAEGSP 94 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH-TTSCCCGGGEEEEEEESCH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHH-HHcCCCCCceEEEEEecCh
Confidence 5678888988888778899999999874210 0 0112234456677777777 77775 466788999
Q ss_pred hchHHHHHHHhCCCEEEE
Q 011155 109 EDNIPNFVRECGASLLVT 126 (492)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~ 126 (492)
.+.|.+.+++.+++-|++
T Consensus 95 ~~~I~~~a~~~~~dliV~ 112 (143)
T 3fdx_A 95 KDKILALAKSLPADLVII 112 (143)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 999999999999999998
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=91.70 E-value=1.2 Score=38.05 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----c----chhHHHHHHHHHHHHHHHHHhhcCC---cEEEEe-CChh
Q 011155 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----A----KARQLGFMLRGLRLLQRNIEETFQI---LFFLFQ-GEAE 109 (492)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~----~----~~~r~~Fl~esL~~L~~~L~~~lG~---~L~v~~-G~~~ 109 (492)
....+|..|+..|...+.+|..+++.++.... . ......-..+.|+.+.+.+ ++.|+ ...+.. |++.
T Consensus 29 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~v~~~g~~~ 107 (156)
T 3fg9_A 29 SSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLA-EQRGVNQVEPLVYEGGDVD 107 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHH-HHHTCSSEEEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHH-HHcCCCceEEEEEeCCCHH
Confidence 34567888888887778899999999875321 0 1122344556777788888 77787 346677 9999
Q ss_pred chHHHH-HHHhCCCEEEE
Q 011155 110 DNIPNF-VRECGASLLVT 126 (492)
Q Consensus 110 ~~l~~l-~~~~~~~~V~~ 126 (492)
+.|.+. +++.+++-|+.
T Consensus 108 ~~I~~~~a~~~~~DlIV~ 125 (156)
T 3fg9_A 108 DVILEQVIPEFKPDLLVT 125 (156)
T ss_dssp HHHHHTHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 999998 89999999998
No 18
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=91.42 E-value=1 Score=38.02 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=58.6
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc-----------cchhHHHHHHHHHHHHHHHHHhhcCC---cEEE
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----------AKARQLGFMLRGLRLLQRNIEETFQI---LFFL 103 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~-----------~~~~r~~Fl~esL~~L~~~L~~~lG~---~L~v 103 (492)
|.--....+|..|+..|...+.+|..+++.++.... .........-++.+.|++-. ++.|+ ...+
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 92 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG-NTLGIDPAHRWL 92 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHH-HHHTCCGGGEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHH-HHcCCCcceEEE
Confidence 333445678888988888878899999999864210 01122233333444444444 44454 4788
Q ss_pred EeCChhchHHHHHHHhCCCEEEEc
Q 011155 104 FQGEAEDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 104 ~~G~~~~~l~~l~~~~~~~~V~~~ 127 (492)
..|++.+.|.+.+++.+++-|++-
T Consensus 93 ~~g~~~~~I~~~a~~~~~dliV~G 116 (150)
T 3tnj_A 93 VWGEPREEIIRIAEQENVDLIVVG 116 (150)
T ss_dssp EESCHHHHHHHHHHHTTCSEEEEE
T ss_pred ecCCHHHHHHHHHHHcCCCEEEEe
Confidence 899999999999999999999983
No 19
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=90.52 E-value=1.2 Score=38.54 Aligned_cols=85 Identities=13% Similarity=-0.020 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCccc-----cc--------------hhHHHHHHHHHHHHHHHHHhhcCCcE-
Q 011155 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----AK--------------ARQLGFMLRGLRLLQRNIEETFQILF- 101 (492)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~-----~~--------------~~r~~Fl~esL~~L~~~L~~~lG~~L- 101 (492)
....+|..|+..|...+.+|..|++.++.... .. .....-..+.|+.+.+.+ +..|++.
T Consensus 17 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~ 95 (170)
T 2dum_A 17 GAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEV-KRAFRAKN 95 (170)
T ss_dssp HHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHH-HHHTTCSE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcee
Confidence 34568888888887777889999998864211 00 111223345666777777 6667643
Q ss_pred ---EEEeCChhchHHHHHHHhCCCEEEEc
Q 011155 102 ---FLFQGEAEDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 102 ---~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (492)
.+..|++.+.|.+.+++.+++-|++-
T Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~DlIV~G 124 (170)
T 2dum_A 96 VRTIIRFGIPWDEIVKVAEEENVSLIILP 124 (170)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTCSEEEEE
T ss_pred eeeEEecCChHHHHHHHHHHcCCCEEEEC
Confidence 56789999999999999999999983
No 20
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=90.32 E-value=1.6 Score=36.49 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCc-c-------------ccchhHHHHHHHHHHHHHHHHHhhcCC-----cEE
Q 011155 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQF-L-------------GAKARQLGFMLRGLRLLQRNIEETFQI-----LFF 102 (492)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~-~-------------~~~~~r~~Fl~esL~~L~~~L~~~lG~-----~L~ 102 (492)
....+|..|++.|...+.+|..+++.++.. . ........-..+.|+.+.+.+ ++.|+ ...
T Consensus 14 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~ 92 (147)
T 3hgm_A 14 GAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRA-TELGVPADKVRAF 92 (147)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHH-HHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHH-HhcCCCccceEEE
Confidence 345678888888887788999999998642 0 001222344556778888888 87785 456
Q ss_pred EEeCChhchHHHHHHHhCCCEEEEc
Q 011155 103 LFQGEAEDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 103 v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (492)
+..|++.+.|.+.+++.+++-|++-
T Consensus 93 ~~~g~~~~~I~~~a~~~~~dliV~G 117 (147)
T 3hgm_A 93 VKGGRPSRTIVRFARKRECDLVVIG 117 (147)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEEC
T ss_pred EecCCHHHHHHHHHHHhCCCEEEEe
Confidence 7789999999999999999999983
No 21
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=87.78 E-value=3.7 Score=33.87 Aligned_cols=83 Identities=10% Similarity=-0.016 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHh-hhCCCCEEEEEEecCCccccc---------hhHH-HHHHHHHHHHHHHHHhhcCCc--EEEEeCCh
Q 011155 42 RDNWALIHAVDQA-NKNNVPVAVAFNLFDQFLGAK---------ARQL-GFMLRGLRLLQRNIEETFQIL--FFLFQGEA 108 (492)
Q Consensus 42 ~DN~aL~~A~~~a-~~~~~~v~~vfi~dp~~~~~~---------~~r~-~Fl~esL~~L~~~L~~~lG~~--L~v~~G~~ 108 (492)
....+|..|+..| ...+.+|..+++.++...... .... .-..+.|+.+.+.+ .+.|++ ..+..|++
T Consensus 13 ~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~v~~g~~ 91 (138)
T 3idf_A 13 ACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFF-TEKGINPFVVIKEGEP 91 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCCCEEEEEESCH
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCeEEEEecCCh
Confidence 3456788888888 777889999999987532110 0111 33456677777778 777765 56778999
Q ss_pred hchHHHHHHHhCCCEEEEc
Q 011155 109 EDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~~ 127 (492)
.+.|.+.++ +++-|++-
T Consensus 92 ~~~I~~~a~--~~dliV~G 108 (138)
T 3idf_A 92 VEMVLEEAK--DYNLLIIG 108 (138)
T ss_dssp HHHHHHHHT--TCSEEEEE
T ss_pred HHHHHHHHh--cCCEEEEe
Confidence 999988888 89999883
No 22
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=87.60 E-value=2.5 Score=36.15 Aligned_cols=84 Identities=10% Similarity=0.122 Sum_probs=58.5
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCC-----cc-ccc-------hh-----------HHHHHHHHHHHHHHHHHhhc
Q 011155 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQ-----FL-GAK-------AR-----------QLGFMLRGLRLLQRNIEETF 97 (492)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~-----~~-~~~-------~~-----------r~~Fl~esL~~L~~~L~~~l 97 (492)
....+|..|++.|...+.+|..+++.++. .. ..+ +. ...-..+.|+.+.+.+ +..
T Consensus 17 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 95 (162)
T 1mjh_A 17 TAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL-EDV 95 (162)
T ss_dssp HHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHc
Confidence 34467888888887777889999998863 10 110 10 0122344566777777 777
Q ss_pred CCcE--EEEeCChhchHHHHHHHhCCCEEEE
Q 011155 98 QILF--FLFQGEAEDNIPNFVRECGASLLVT 126 (492)
Q Consensus 98 G~~L--~v~~G~~~~~l~~l~~~~~~~~V~~ 126 (492)
|++. .+..|++.+.|.+.+++.+++-|++
T Consensus 96 g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~ 126 (162)
T 1mjh_A 96 GFKVKDIIVVGIPHEEIVKIAEDEGVDIIIM 126 (162)
T ss_dssp TCEEEEEEEEECHHHHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEcCCCHHHHHHHHHHHcCCCEEEE
Confidence 8764 5667999999999999999999998
No 23
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=87.29 E-value=1.2 Score=38.71 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=57.9
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEE--EEecCCcc--ccc-------hhHHHHHHHHHHHHHHHHHhhcCCc---EEE
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVA--FNLFDQFL--GAK-------ARQLGFMLRGLRLLQRNIEETFQIL---FFL 103 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~v--fi~dp~~~--~~~-------~~r~~Fl~esL~~L~~~L~~~lG~~---L~v 103 (492)
|.--....+|..|++.|. .+.+|..| ++.++... ... .....-..+.|+.+.+.+ ++.|++ ..+
T Consensus 25 D~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gv~~v~~~v 102 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERA-HNAGAKNVEERP 102 (163)
T ss_dssp CSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHH-HTTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHcCCCeEEEEE
Confidence 333344568888988888 77789888 88775321 000 000011235567777778 777876 567
Q ss_pred EeCChhchHHHHHHHhCCCEEEEc
Q 011155 104 FQGEAEDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 104 ~~G~~~~~l~~l~~~~~~~~V~~~ 127 (492)
..|++.+.|.+.+++.+++-|++-
T Consensus 103 ~~G~~~~~I~~~a~~~~~DLIV~G 126 (163)
T 1tq8_A 103 IVGAPVDALVNLADEEKADLLVVG 126 (163)
T ss_dssp ECSSHHHHHHHHHHHTTCSEEEEE
T ss_pred ecCCHHHHHHHHHHhcCCCEEEEC
Confidence 789999999999999999999983
No 24
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=84.03 E-value=6.1 Score=32.54 Aligned_cols=83 Identities=16% Similarity=0.032 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCccccc---hhH--HHHHHHHHHHHHHHHHhhcCC---cEEEEeCChhchHHH
Q 011155 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQ--LGFMLRGLRLLQRNIEETFQI---LFFLFQGEAEDNIPN 114 (492)
Q Consensus 43 DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~---~~r--~~Fl~esL~~L~~~L~~~lG~---~L~v~~G~~~~~l~~ 114 (492)
...+|..|+..|...+.+|..+++.++.....+ +.. ....-++-+.|++-. ++.|+ ...+..|++.+.|.+
T Consensus 15 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~g~~~~~I~~ 93 (137)
T 2z08_A 15 ARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEAR-ALTGVPKEDALLLEGVPAEAILQ 93 (137)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHH-HHHCCCGGGEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHH-HHcCCCccEEEEEecCHHHHHHH
Confidence 346788888888777789999999885321111 000 000111112222222 22565 567788999999999
Q ss_pred HHHHhCCCEEEE
Q 011155 115 FVRECGASLLVT 126 (492)
Q Consensus 115 l~~~~~~~~V~~ 126 (492)
.+++.+++-|++
T Consensus 94 ~a~~~~~dliV~ 105 (137)
T 2z08_A 94 AARAEKADLIVM 105 (137)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999998
No 25
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=82.81 E-value=22 Score=33.71 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=70.9
Q ss_pred CHHHHHHHHHhhhC--CCCEEEEEEecCCcccc---------chhHHHHHHHHHHHHHHHHHhhcCC---cEEEEeCChh
Q 011155 44 NWALIHAVDQANKN--NVPVAVAFNLFDQFLGA---------KARQLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAE 109 (492)
Q Consensus 44 N~aL~~A~~~a~~~--~~~v~~vfi~dp~~~~~---------~~~r~~Fl~esL~~L~~~L~~~lG~---~L~v~~G~~~ 109 (492)
..+|..|...|... +.+|..|++.++..... ........-+..+.|++-+ ++.|+ ...+..|++.
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~v~~g~~~ 255 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELR-QKFSIPEEKTHVKEGLPE 255 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHH-HHhCCCcccEEEecCCcH
Confidence 56788888888776 77999999998653210 1112223334445555555 66665 5788899999
Q ss_pred chHHHHHHHhCCCEEEE-cCCcChHHHHHHHHHHHHh-c-CCCeEEEEe
Q 011155 110 DNIPNFVRECGASLLVT-DFSPLREIRRCKDKICNRV-S-DSVTIHEVD 155 (492)
Q Consensus 110 ~~l~~l~~~~~~~~V~~-~~~p~~~~~~~d~~v~~~l-~-~~v~~~~~~ 155 (492)
+.|.+.+++.+++-|++ ........+-.--.+.+.+ . ..+++..+.
T Consensus 256 ~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~ 304 (319)
T 3olq_A 256 QVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIK 304 (319)
T ss_dssp HHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEEC
Confidence 99999999999999998 3222221122334555543 3 567776664
No 26
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=80.21 E-value=8.2 Score=36.47 Aligned_cols=82 Identities=16% Similarity=0.085 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhhhCCCCEEEEEEecCCccccc----hhHHHHHHHHHHHHHHHHHhhcCC---cEEEEeCChhchHHHHH
Q 011155 44 NWALIHAVDQANKNNVPVAVAFNLFDQFLGAK----ARQLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAEDNIPNFV 116 (492)
Q Consensus 44 N~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~----~~r~~Fl~esL~~L~~~L~~~lG~---~L~v~~G~~~~~l~~l~ 116 (492)
..+|..|+..|...+.+|..+++.++...... ...-...-+..+.|++-+ ++.|+ ...+..|++.+.|.+.+
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~v~~g~~~~~I~~~a 233 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ-AEYGFSDEQLHIEEGPADVLIPRTA 233 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH-HHHTCCTTTEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH-HHcCCCcceEEEeccCHHHHHHHHH
Confidence 56888888888887889999999986432110 111112223344444444 55565 56888999999999999
Q ss_pred HHhCCCEEEE
Q 011155 117 RECGASLLVT 126 (492)
Q Consensus 117 ~~~~~~~V~~ 126 (492)
++.+++-|++
T Consensus 234 ~~~~~dLiVm 243 (290)
T 3mt0_A 234 QKLDAVVTVI 243 (290)
T ss_dssp HHHTCSEEEE
T ss_pred HhcCCCEEEE
Confidence 9999999998
No 27
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=79.68 E-value=11 Score=35.73 Aligned_cols=78 Identities=18% Similarity=0.051 Sum_probs=61.3
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCc--EEEEeCChhchHHHH
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL--FFLFQGEAEDNIPNF 115 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~--L~v~~G~~~~~l~~l 115 (492)
|.--....+|..|...|...+.+|..+++.++.. --+.++++.+.| ++.|++ ..+..|++.+.|.+.
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------~~~~l~~~~~~l-~~~~~~~~~~~~~g~~~~~I~~~ 246 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------KTADLRVMEEVI-GAEGIEVHVHIESGTPHKAILAK 246 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------CHHHHHHHHHHH-HHTTCCEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------HHHHHHHHHHHH-HHcCCcEEEEEecCCHHHHHHHH
Confidence 5555566788888888777777899999988643 235677888888 888876 455679999999999
Q ss_pred HHHhCCCEEEE
Q 011155 116 VRECGASLLVT 126 (492)
Q Consensus 116 ~~~~~~~~V~~ 126 (492)
+++.+++-|++
T Consensus 247 a~~~~~dLlV~ 257 (294)
T 3loq_A 247 REEINATTIFM 257 (294)
T ss_dssp HHHTTCSEEEE
T ss_pred HHhcCcCEEEE
Confidence 99999999998
No 28
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=76.44 E-value=13 Score=30.43 Aligned_cols=88 Identities=18% Similarity=0.051 Sum_probs=57.9
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEe-cC--Cc-------cccch----hHHHHHHHHHHHHHHH--HHhhcC-Cc
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNL-FD--QF-------LGAKA----RQLGFMLRGLRLLQRN--IEETFQ-IL 100 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~-dp--~~-------~~~~~----~r~~Fl~esL~~L~~~--L~~~lG-~~ 100 (492)
|.--....+|..|+..|...+.+|..+++. ++ .. ..... ....-..+.|+.+ +. + ...| +.
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~ 89 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLT-GSTEIPG 89 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHH-SCCCCCC
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhh-ccCCcce
Confidence 444445678999999988778899999998 62 11 00001 0111223444555 44 3 3344 56
Q ss_pred EEEEeCChhchHHHHHHHhCCCEEEEc
Q 011155 101 FFLFQGEAEDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 101 L~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (492)
..+..|++.+.|.+.+++.+++-|++-
T Consensus 90 ~~~~~g~~~~~I~~~a~~~~~dliV~G 116 (138)
T 1q77_A 90 VEYRIGPLSEEVKKFVEGKGYELVVWA 116 (138)
T ss_dssp EEEECSCHHHHHHHHHTTSCCSEEEEC
T ss_pred EEEEcCCHHHHHHHHHHhcCCCEEEEe
Confidence 677889999999999999999999984
No 29
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=75.19 E-value=3.7 Score=34.01 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=66.4
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecC--Ccc-ccchh-HHH----HHHHHHHHHHHHHHhhcCCc---EEEEeC
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFD--QFL-GAKAR-QLG----FMLRGLRLLQRNIEETFQIL---FFLFQG 106 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp--~~~-~~~~~-r~~----Fl~esL~~L~~~L~~~lG~~---L~v~~G 106 (492)
|.--....+|..|+..|...+.+|..+++.++ ... ..... --. ..-++.+.|++-+ ++.|++ ..+..|
T Consensus 10 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~g 88 (141)
T 1jmv_A 10 DLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLA-ESVDYPISEKLSGSG 88 (141)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHH-HHSSSCCCCEEEEEE
T ss_pred cCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHH-HHcCCCceEEEEecC
Confidence 33334456888898888877789999999843 111 10000 000 0112333444444 555654 467789
Q ss_pred ChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHh-c-CCCeEEEE
Q 011155 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-S-DSVTIHEV 154 (492)
Q Consensus 107 ~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l-~-~~v~~~~~ 154 (492)
++.+.|.+.+++.+++-|++-...... ... -.+.+.+ . ..+++..+
T Consensus 89 ~~~~~I~~~a~~~~~dliV~G~~~~~~-~~l-gs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 89 DLGQVLSDAIEQYDVDLLVTGHHQDFW-SKL-MSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEECCCCH-HHH-HHHHHHHHTTCCSEEEEE
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCchh-hhh-cchHHHHHhcCCCCEEEe
Confidence 999999999999999999983222222 112 3444443 3 46776655
No 30
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=73.93 E-value=19 Score=30.81 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=53.0
Q ss_pred CHHHHHHHHHhhh---CCCCEEEEEEecCCccc--------cchh--------HHHHHHHHHHHHHHHHHhhcCCcE--E
Q 011155 44 NWALIHAVDQANK---NNVPVAVAFNLFDQFLG--------AKAR--------QLGFMLRGLRLLQRNIEETFQILF--F 102 (492)
Q Consensus 44 N~aL~~A~~~a~~---~~~~v~~vfi~dp~~~~--------~~~~--------r~~Fl~esL~~L~~~L~~~lG~~L--~ 102 (492)
..+|..|++.|.+ .+.+|..|++.++.... .... ...-..+.|+.+.+.+ .+.|++. .
T Consensus 28 ~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~ 106 (175)
T 2gm3_A 28 KRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKC-HEIGVGCEAW 106 (175)
T ss_dssp HHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHTCEEEEE
T ss_pred HHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCceEEE
Confidence 3467778775433 35578889988643110 0011 1112335566677777 7778765 4
Q ss_pred EEeCChhchHHHHHHHhCCCEEEE
Q 011155 103 LFQGEAEDNIPNFVRECGASLLVT 126 (492)
Q Consensus 103 v~~G~~~~~l~~l~~~~~~~~V~~ 126 (492)
+..|++.+.|.+.+++.+++-|++
T Consensus 107 v~~G~~~~~I~~~a~~~~~DLIVm 130 (175)
T 2gm3_A 107 IKTGDPKDVICQEVKRVRPDFLVV 130 (175)
T ss_dssp EEESCHHHHHHHHHHHHCCSEEEE
T ss_pred EecCCHHHHHHHHHHHhCCCEEEE
Confidence 667999999999999999999998
No 31
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=70.85 E-value=12 Score=35.20 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=61.1
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEE--E-eCChhchHHH
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFL--F-QGEAEDNIPN 114 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v--~-~G~~~~~l~~ 114 (492)
|.--....+|..|+..|.+.+.+|..+++.+|. .. .+.|+++.+.+ +..|++... . .|++.+.|.+
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~-----~~-----~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~ 83 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR-----DH-----SAALNDLAQEL-REEGYSVSTNQAWKDSLHQTIIA 83 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS-----CC-----HHHHHHHHHHH-HHTTCCEEEEEECSSSHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH-----HH-----HHHHHHHHHHH-hhCCCeEEEEEEeCCCHHHHHHH
Confidence 777778899999999998888899999998751 11 13456677777 777877654 3 3678889999
Q ss_pred HHHHhCCCEEEEc
Q 011155 115 FVRECGASLLVTD 127 (492)
Q Consensus 115 l~~~~~~~~V~~~ 127 (492)
.+++.+++-|++-
T Consensus 84 ~a~~~~~dliV~G 96 (290)
T 3mt0_A 84 EQQAEGCGLIIKQ 96 (290)
T ss_dssp HHHHHTCSEEEEE
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999983
No 32
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=67.68 E-value=39 Score=31.93 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=61.8
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----cc-hhH-------HHHHHHHHHHHHHHHHhhcCCcE--EE
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AK-ARQ-------LGFMLRGLRLLQRNIEETFQILF--FL 103 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~----~~-~~r-------~~Fl~esL~~L~~~L~~~lG~~L--~v 103 (492)
|.--....+|..|+..|.+.+.+|..+++.++.... .+ ... ..-..+.|+.+.+.+ ...|++. .+
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~~~~~~ 93 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYY-LEAGIQIDIKV 93 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCeEEEEE
Confidence 666677889999999998888899999997642111 00 111 112234556666666 6667765 44
Q ss_pred E-eCChhchHHHHHHHhCCCEEEE
Q 011155 104 F-QGEAEDNIPNFVRECGASLLVT 126 (492)
Q Consensus 104 ~-~G~~~~~l~~l~~~~~~~~V~~ 126 (492)
. .|++.+.|.+.+++.+++-|++
T Consensus 94 ~~~g~~~~~i~~~a~~~~~DLiV~ 117 (319)
T 3olq_A 94 IWHNRPYEAIIEEVITDKHDLLIK 117 (319)
T ss_dssp EECSCHHHHHHHHHHHHTCSEEEE
T ss_pred EecCChHHHHHHHHHhcCCCEEEE
Confidence 4 7899999999999999999998
No 33
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=61.68 E-value=16 Score=34.05 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=48.3
Q ss_pred hhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEEEe--CCh---hchHHHHHHHhCCCEEEE-cC
Q 011155 55 NKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GEA---EDNIPNFVRECGASLLVT-DF 128 (492)
Q Consensus 55 ~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~--G~~---~~~l~~l~~~~~~~~V~~-~~ 128 (492)
.++|..|+.++..-+... .+..|-...+...+..- +.+|+|+++.. |+. .+.+.+++++.+|+.|++ +.
T Consensus 25 ~~~G~eV~~L~~~~~~~~----~s~~~h~~~~e~a~~~A-~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 25 IKNRFSVKFLVTMVSENE----ESYMYHTINANLTDLQA-RALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp HHTTCEEEEEEEEECC------------CCSSSHHHHHH-HHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred HHcCCeEEEEEEEcCCCC----CccccCCccHHHHHHHH-HHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 346778888865544311 11111112244455556 77899999876 322 344556667779999998 43
Q ss_pred CcChHHHHHHHHHHHHhcCCCeEEE
Q 011155 129 SPLREIRRCKDKICNRVSDSVTIHE 153 (492)
Q Consensus 129 ~p~~~~~~~d~~v~~~l~~~v~~~~ 153 (492)
. ....+.|.+++...+ |+....
T Consensus 100 ~-s~yqr~r~e~vc~~~--gl~~~~ 121 (237)
T 3rjz_A 100 A-SKYQRKRIEKVAKEL--GLEVYT 121 (237)
T ss_dssp --CCSHHHHHHHHHHHT--TCEEEC
T ss_pred c-hHHHHHHHHHHHHHc--CCEEEc
Confidence 1 122255666666555 665544
No 34
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=61.63 E-value=11 Score=35.88 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=54.2
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----cc-hhHHHHHHHHHHHHHHHHHhh--cC--CcEEEEeCCh
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AK-ARQLGFMLRGLRLLQRNIEET--FQ--ILFFLFQGEA 108 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~----~~-~~r~~Fl~esL~~L~~~L~~~--lG--~~L~v~~G~~ 108 (492)
|..-....+|..|+..|...+.+|..|++.++.... .. .....-..+.|+++...+ .+ .| +...+..|++
T Consensus 179 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~g~~ 257 (309)
T 3cis_A 179 DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGW-QERYPNVAITRVVVRDQP 257 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTH-HHHCTTSCEEEEEESSCH
T ss_pred CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHH-HhhCCCCcEEEEEEcCCH
Confidence 555555678888888887778899999998864211 00 111112223333443344 32 24 4556678999
Q ss_pred hchHHHHHHHhCCCEEEE
Q 011155 109 EDNIPNFVRECGASLLVT 126 (492)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~ 126 (492)
.+.|.+.++ +++-|++
T Consensus 258 ~~~I~~~a~--~adliV~ 273 (309)
T 3cis_A 258 ARQLVQRSE--EAQLVVV 273 (309)
T ss_dssp HHHHHHHHT--TCSEEEE
T ss_pred HHHHHHhhC--CCCEEEE
Confidence 999988887 8999988
No 35
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=61.48 E-value=13 Score=34.96 Aligned_cols=87 Identities=16% Similarity=0.008 Sum_probs=63.7
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc-------c---chhHHHHHHHHHHHHHHHHHhhcCCcEEE---E
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-------A---KARQLGFMLRGLRLLQRNIEETFQILFFL---F 104 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~-------~---~~~r~~Fl~esL~~L~~~L~~~lG~~L~v---~ 104 (492)
|.--....+|..|+..|...+.+|..+++.++.... . ......-..+.|+.+.+.+ ++.|++... .
T Consensus 30 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~v~ 108 (294)
T 3loq_A 30 DLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKI-EAAGIKAEVIKPF 108 (294)
T ss_dssp CSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEECSSC
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcceeEee
Confidence 444455678888888888888899999998864311 0 0122334556778888888 888988765 4
Q ss_pred -eCChhchHHHHHHHhCCCEEEEc
Q 011155 105 -QGEAEDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 105 -~G~~~~~l~~l~~~~~~~~V~~~ 127 (492)
.|++.+.| .+++.+++-|++-
T Consensus 109 ~~g~~~~~I--~a~~~~~DliV~G 130 (294)
T 3loq_A 109 PAGDPVVEI--IKASENYSFIAMG 130 (294)
T ss_dssp CEECHHHHH--HHHHTTSSEEEEE
T ss_pred ccCChhHhe--eeccCCCCEEEEc
Confidence 78898888 8889999999984
No 36
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=59.49 E-value=21 Score=33.01 Aligned_cols=83 Identities=18% Similarity=0.029 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCccc------c--------------chhHHHHHHHHHHHHHHHHHhhcCCcE
Q 011155 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG------A--------------KARQLGFMLRGLRLLQRNIEETFQILF 101 (492)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~------~--------------~~~r~~Fl~esL~~L~~~L~~~lG~~L 101 (492)
....+|..|+..|.+.+.+|..+++.++.... . ......-..+.|+.+.+.+ ++.|++.
T Consensus 12 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~ 90 (268)
T 3ab8_A 12 QARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSA-LAAGVAV 90 (268)
T ss_dssp GGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCe
Confidence 34468888988888778899999998753211 0 0011222345566677777 7778654
Q ss_pred --EEEeCChhchHHHHHHHhCCCEEEEc
Q 011155 102 --FLFQGEAEDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 102 --~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (492)
.+..|++.+.|.+. +.+++-|++-
T Consensus 91 ~~~~~~g~~~~~I~~~--~~~~dliV~G 116 (268)
T 3ab8_A 91 EAVLEEGVPHEAILRR--ARAADLLVLG 116 (268)
T ss_dssp EEEEEEECHHHHHHHH--HTTCSEEEEE
T ss_pred EEEEecCCHHHHHHhh--ccCCCEEEEe
Confidence 45679998888877 7899999983
No 37
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=51.80 E-value=48 Score=31.31 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCccc-----cc-h---hHHHHHHHHHHHHHHHHHhhc-----CCcE--EEEe
Q 011155 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----AK-A---RQLGFMLRGLRLLQRNIEETF-----QILF--FLFQ 105 (492)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~-----~~-~---~r~~Fl~esL~~L~~~L~~~l-----G~~L--~v~~ 105 (492)
....+|..|+..|.+.+.+|..+++.++.... .. . ....-..+.|+++.+.+ ++. |++. .+..
T Consensus 31 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 109 (309)
T 3cis_A 31 AAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVV-EQASLRAGPPTVHSEIVP 109 (309)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCSSSCCSCEEEEEES
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHH-HHhcccCCCceEEEEEec
Confidence 34568888888888778899999999864321 01 1 11222345566677777 654 6654 4567
Q ss_pred CChhchHHHHHHHhCCCEEEE
Q 011155 106 GEAEDNIPNFVRECGASLLVT 126 (492)
Q Consensus 106 G~~~~~l~~l~~~~~~~~V~~ 126 (492)
|++.+.|.+.++ +++-|++
T Consensus 110 g~~~~~I~~~a~--~~DliV~ 128 (309)
T 3cis_A 110 AAAVPTLVDMSK--DAVLMVV 128 (309)
T ss_dssp SCHHHHHHHHGG--GEEEEEE
T ss_pred CCHHHHHHHHhc--CCCEEEE
Confidence 888888888765 7888887
No 38
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=39.50 E-value=82 Score=30.68 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEc
Q 011155 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127 (492)
Q Consensus 84 esL~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (492)
+-+..+++-| +.+|++.++..+++.+++..|++.--+..|+++
T Consensus 130 ~~~~~~~~lL-~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~ 172 (340)
T 1b43_A 130 MLIEDAKKLL-ELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQ 172 (340)
T ss_dssp HHHHHHHHHH-HHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHH-HHcCCcEEEcChhHHHHHHHHHHcCCEEEEEcc
Confidence 4456677777 888888888888888888888876556666553
No 39
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=38.65 E-value=45 Score=30.61 Aligned_cols=77 Identities=17% Similarity=0.021 Sum_probs=53.4
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEE--EEeCChhchHHHH
Q 011155 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFF--LFQGEAEDNIPNF 115 (492)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~--v~~G~~~~~l~~l 115 (492)
|..-....+|..|...|...+.+|..+++.++. . -..+.|+++.+.| ++.|++.. +..|++.+.|.+.
T Consensus 162 d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----~----~~~~~l~~~~~~l-~~~~~~~~~~~~~g~~~~~i~~~ 231 (268)
T 3ab8_A 162 DASESAVRALHALAPLARALGLGVRVVSVHEDP-----A----RAEAWALEAEAYL-RDHGVEASALVLGGDAADHLLRL 231 (268)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----H----HHHHHHHHHHHHH-HHTTCCEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----H----HHHHHHHHHHHHH-HHcCCceEEEEeCCChHHHHHHH
Confidence 544455567877777776667789999997752 1 1235677788888 87887654 4568888888888
Q ss_pred HHHhCCCEEEE
Q 011155 116 VRECGASLLVT 126 (492)
Q Consensus 116 ~~~~~~~~V~~ 126 (492)
+++. +-|++
T Consensus 232 a~~~--dliV~ 240 (268)
T 3ab8_A 232 QGPG--DLLAL 240 (268)
T ss_dssp CCTT--EEEEE
T ss_pred HHhC--CEEEE
Confidence 7766 55555
No 40
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=36.24 E-value=40 Score=29.85 Aligned_cols=43 Identities=14% Similarity=-0.017 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEE
Q 011155 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (492)
Q Consensus 83 ~esL~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~ 126 (492)
...+.++-+.| ++.|+++.|..+.+...+..+++.+|+..++.
T Consensus 94 ~~g~~~~l~~l-~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~ 136 (232)
T 3fvv_A 94 TVQAVDVVRGH-LAAGDLCALVTATNSFVTAPIARAFGVQHLIA 136 (232)
T ss_dssp CHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEE
Confidence 45666777777 77888888888888777777888888876654
No 41
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=34.38 E-value=1.8e+02 Score=27.59 Aligned_cols=71 Identities=7% Similarity=0.092 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeCC--hh---chHHHHHHH-hCCCEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEE
Q 011155 81 FMLRGLRLLQRNIEETFQILFFLFQGE--AE---DNIPNFVRE-CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154 (492)
Q Consensus 81 Fl~esL~~L~~~L~~~lG~~L~v~~G~--~~---~~l~~l~~~-~~~~~V~~~~~p~~~~~~~d~~v~~~l~~~v~~~~~ 154 (492)
|..+-+..+++.+ +++|..+.+...+ +. +.+..+++. .+++.|++.-+... ....++.+.+.||++..+
T Consensus 18 f~~~~~~g~~~~a-~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~----~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 18 FWVSYSQFMQAAA-RDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYV----APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHH-HHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSH----HHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHH-HHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhh----HHHHHHHHHhCCCcEEEE
Confidence 6667777788888 8889999888643 22 345666665 78999988432222 123444433579999998
Q ss_pred eC
Q 011155 155 DA 156 (492)
Q Consensus 155 ~~ 156 (492)
+.
T Consensus 93 ~~ 94 (350)
T 3h75_A 93 NS 94 (350)
T ss_dssp ES
T ss_pred cC
Confidence 64
No 42
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=33.89 E-value=89 Score=30.57 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEE
Q 011155 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (492)
Q Consensus 83 ~esL~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~ 126 (492)
.+-+..+++-| +.+|++.++..|++.+++..|++.-.+..|++
T Consensus 134 ~~q~~~~~~lL-~~~gip~i~ap~EADd~ia~La~~g~v~~i~s 176 (341)
T 3q8k_A 134 KQHNDECKHLL-SLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176 (341)
T ss_dssp HHHHHHHHHHH-HHHTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHH-HHcCCCEEECCccHHHHHHHHHhcCCeEEEEc
Confidence 34556677777 88888888888888888888877644444444
No 43
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=33.63 E-value=82 Score=31.16 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEE
Q 011155 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (492)
Q Consensus 86 L~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~ 126 (492)
+..+++-| +.+|++.+...|++++++..|++.--+..|++
T Consensus 146 ~~~i~~lL-~~~GIp~i~apgEADaqiA~La~~g~~~~I~S 185 (363)
T 3ory_A 146 VRDAKSLL-DAMGIPWVQAPAEGEAQAAYIVKKGDAYASAS 185 (363)
T ss_dssp HHHHHHHH-HHHTCCEEECSSCHHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHH-HHCCCCEEEeCccHHHHHHHHHHCCCeEEEEC
Confidence 55566666 66777777777766666666665433444444
No 44
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=29.33 E-value=1.9e+02 Score=24.80 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHHHHHHHHHH---hhcCCcEEEEeCChhchHHHHHHH--hCCCEEEEc---CCcChHHHHHHHHHHHHhcCCCeEEEEe
Q 011155 84 RGLRLLQRNIE---ETFQILFFLFQGEAEDNIPNFVRE--CGASLLVTD---FSPLREIRRCKDKICNRVSDSVTIHEVD 155 (492)
Q Consensus 84 esL~~L~~~L~---~~lG~~L~v~~G~~~~~l~~l~~~--~~~~~V~~~---~~p~~~~~~~d~~v~~~l~~~v~~~~~~ 155 (492)
++|+++.+.++ .++|+.+.+++.+.+..|-+.+++ -+++.|+.| ++-... ...++++....-++++.+++
T Consensus 29 ~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv--AlrDAl~~l~~~~~P~VEVH 106 (151)
T 3u80_A 29 QDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSY--ALADAAHMVIDENLPLMEVH 106 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCH--HHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH--HHHHHHHHHhhcCCCEEEEE
Confidence 34444444440 357999999998877665554433 247778886 443442 11233332223478999988
Q ss_pred CceeEeC
Q 011155 156 AHNVVPV 162 (492)
Q Consensus 156 ~~~l~~~ 162 (492)
-..++..
T Consensus 107 iSNi~aR 113 (151)
T 3u80_A 107 ISNPSAR 113 (151)
T ss_dssp SSCCC--
T ss_pred cCCcccc
Confidence 6655543
No 45
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=29.23 E-value=1.7e+02 Score=26.79 Aligned_cols=75 Identities=9% Similarity=-0.002 Sum_probs=37.5
Q ss_pred HHHHHhhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEEEeC-----ChhchHHHHHHHhCCCE
Q 011155 49 HAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-----EAEDNIPNFVRECGASL 123 (492)
Q Consensus 49 ~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~G-----~~~~~l~~l~~~~~~~~ 123 (492)
.+++.|..-|.+.+.++.-...........+..+.++|+.+.+.. ++.|+.|.+..- ...+.+..++++.+-..
T Consensus 88 ~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~~ 166 (286)
T 3dx5_A 88 QLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELF-AQHNMYVLLETHPNTLTDTLPSTLELLGEVDHPN 166 (286)
T ss_dssp HHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHH-HHTTCEEEEECCTTSTTSSHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHH-HHhCCEEEEecCCCcCcCCHHHHHHHHHhcCCCC
Confidence 344445555666554432221111112334566667777777776 677777666542 12334555666655443
Q ss_pred E
Q 011155 124 L 124 (492)
Q Consensus 124 V 124 (492)
|
T Consensus 167 v 167 (286)
T 3dx5_A 167 L 167 (286)
T ss_dssp E
T ss_pred e
Confidence 3
No 46
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=28.14 E-value=1.9e+02 Score=23.23 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=28.7
Q ss_pred EEEeCChhchHHHHHHH---hCCCEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEEe
Q 011155 102 FLFQGEAEDNIPNFVRE---CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD 155 (492)
Q Consensus 102 ~v~~G~~~~~l~~l~~~---~~~~~V~~~~~p~~~~~~~d~~v~~~l~~~v~~~~~~ 155 (492)
++......++|.+++++ .|+..|..-.+-. +..|.+++.+.-+.|+.++++.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqd--ekrrrerleefekqgvdvrtve 59 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQD--EKRRRERLEEFEKQGVDVRTVE 59 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSC--HHHHHHHHHHHHTTTCEEEECC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCch--HHHHHHHHHHHHHcCCceeeec
Confidence 33334444667776644 3555444311111 2455677777666788888865
No 47
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=27.20 E-value=2e+02 Score=26.58 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=50.7
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEEEeCC-----hhchHHHHHHHhCC
Q 011155 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE-----AEDNIPNFVRECGA 121 (492)
Q Consensus 47 L~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~G~-----~~~~l~~l~~~~~~ 121 (492)
+..+++.|.+-|.+.+.+...++..-......+..+.++|+.+.+.. ++.|+.|.+..-. ..+.+.+++++.+-
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lEn~~~~~~~~~~~~~~l~~~v~~ 188 (295)
T 3cqj_A 110 MRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMA-SRAQVTLAMEIMDYPLMNSISKALGYAHYLNN 188 (295)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHH-HHHTCEEEEECCSSGGGCSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHH-HHhCCEEEEeeCCCcccCCHHHHHHHHHhcCC
Confidence 55566667777878765432222111123455777889999999999 8999999887532 33556677777765
Q ss_pred CEEEE
Q 011155 122 SLLVT 126 (492)
Q Consensus 122 ~~V~~ 126 (492)
..|-+
T Consensus 189 ~~vg~ 193 (295)
T 3cqj_A 189 PWFQL 193 (295)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 55544
No 48
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=26.15 E-value=1.6e+02 Score=25.84 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCc
Q 011155 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (492)
Q Consensus 91 ~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p 130 (492)
+.| ++.|+++.|..+.+...+..++++.++..++....|
T Consensus 62 ~~L-~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k~ 100 (195)
T 3n07_A 62 KAL-MNAGIEIAIITGRRSQIVENRMKALGISLIYQGQDD 100 (195)
T ss_dssp HHH-HHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSCSS
T ss_pred HHH-HHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCCC
Confidence 456 888999999999999999999999999998876544
No 49
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=26.10 E-value=2.1e+02 Score=26.20 Aligned_cols=89 Identities=6% Similarity=0.025 Sum_probs=53.8
Q ss_pred CCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCh---hchHHHHHHHhCCCEEEEcCCcChHHH
Q 011155 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEA---EDNIPNFVRECGASLLVTDFSPLREIR 135 (492)
Q Consensus 59 ~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~G~~---~~~l~~l~~~~~~~~V~~~~~p~~~~~ 135 (492)
...|.|.+-+.. ....-.|..+-+..+.+.+ ++.|..+.+...+. ...+.+++...+++.|++.-.....
T Consensus 6 s~~Igvi~~~~~----~~~~~~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 78 (294)
T 3qk7_A 6 TDAIALAYPSRP----RVLNNSTFLEMISWIGIEL-GKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-- 78 (294)
T ss_dssp CCEEEEEEESCS----GGGSCHHHHHHHHHHHHHH-HHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--
T ss_pred cceEEEEecCCC----ccccChhHHHHHHHHHHHH-HHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence 356666664221 0112347777888888999 99999998876442 2235556667799999884221110
Q ss_pred HHHHHHHHHhcCCCeEEEEeCc
Q 011155 136 RCKDKICNRVSDSVTIHEVDAH 157 (492)
Q Consensus 136 ~~d~~v~~~l~~~v~~~~~~~~ 157 (492)
..+..+.+.||++..++..
T Consensus 79 ---~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 79 ---FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp ---HHHHHHHHTTCCEEEESCC
T ss_pred ---HHHHHHHhCCCCEEEECCC
Confidence 2233322468999988754
No 50
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=25.65 E-value=1.3e+02 Score=25.62 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEE
Q 011155 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV 125 (492)
Q Consensus 83 ~esL~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~ 125 (492)
+..|+++.+++ ++.|+.++.+..+..+.+.+++++++++-.+
T Consensus 71 l~~l~~l~~~~-~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~ 112 (179)
T 3ixr_A 71 GLEFNLLLPQF-EQINATVLGVSRDSVKSHDSFCAKQGFTFPL 112 (179)
T ss_dssp HHHHHHHHHHH-HTTTEEEEEEESCCHHHHHHHHHHHTCCSCE
T ss_pred HHHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHcCCceEE
Confidence 57889999999 9899998888888888899999998876433
No 51
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=25.55 E-value=1.2e+02 Score=28.77 Aligned_cols=62 Identities=6% Similarity=-0.000 Sum_probs=50.6
Q ss_pred EEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEEEeCChhc--hHHHHHHHhCCCEEE
Q 011155 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVRECGASLLV 125 (492)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~G~~~~--~l~~l~~~~~~~~V~ 125 (492)
.+|+.|.....+|.+....+.+-+.+.-+.| .+.|..++|+..+... .+..|.+.+++.-|-
T Consensus 52 ~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L-~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 52 IIYYGDTARVPYGVKDKDTIIKFCLEALDFF-EQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp EEEEECTTTCCCTTSCHHHHHHHHHHHHHHH-TTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 4899998777788888888888888888899 9999999999888665 378888888776553
No 52
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=25.09 E-value=1.9e+02 Score=24.94 Aligned_cols=42 Identities=7% Similarity=0.024 Sum_probs=35.0
Q ss_pred HHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCcCh
Q 011155 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (492)
Q Consensus 90 ~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (492)
=+.| ++.|+++.++.+.+...+..+++..++..++...-|-.
T Consensus 55 l~~L-~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kpk~ 96 (191)
T 3n1u_A 55 LKLL-MAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKR 96 (191)
T ss_dssp HHHH-HHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSCSSCH
T ss_pred HHHH-HHCCCeEEEEeCcChHHHHHHHHHcCCccceeCCCChH
Confidence 3556 88899999999999999999999999999887654544
No 53
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=24.65 E-value=71 Score=27.79 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcC
Q 011155 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128 (492)
Q Consensus 89 L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 128 (492)
+=+.| ++.|+++.+..|.+...+..+++..++..++...
T Consensus 54 ~l~~L-~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~ 92 (189)
T 3mn1_A 54 GIKML-IASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR 92 (189)
T ss_dssp HHHHH-HHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC
T ss_pred HHHHH-HHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc
Confidence 44567 8889999999999999999999999999888754
No 54
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=24.36 E-value=2.1e+02 Score=24.29 Aligned_cols=40 Identities=5% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCc
Q 011155 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (492)
Q Consensus 89 L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p 130 (492)
+=+.| ++.|+++.|..|.+...+..+++..++. ++....|
T Consensus 47 ~l~~L-~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~~~ 86 (176)
T 3mmz_A 47 GIAAL-RKSGLTMLILSTEQNPVVAARARKLKIP-VLHGIDR 86 (176)
T ss_dssp HHHHH-HHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESCSC
T ss_pred HHHHH-HHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCCCC
Confidence 45667 8899999999999999999999999999 5554433
No 55
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=24.01 E-value=1.9e+02 Score=23.79 Aligned_cols=43 Identities=9% Similarity=-0.067 Sum_probs=35.2
Q ss_pred HHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCcCh
Q 011155 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (492)
Q Consensus 89 L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (492)
+-+.| ++.|+++.+..|.+......+++.+++..++....|..
T Consensus 39 ~l~~l-~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~kpk~ 81 (164)
T 3e8m_A 39 GIFWA-HNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVVDKL 81 (164)
T ss_dssp HHHHH-HHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSCSCHH
T ss_pred HHHHH-HHCCCEEEEEeCCChHHHHHHHHHcCCCEeecccCChH
Confidence 34566 78899999999999999999999999998887654533
No 56
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=23.93 E-value=35 Score=19.80 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHhCc
Q 011155 363 DPLWNASQMEMVYNGK 378 (492)
Q Consensus 363 ~P~vDAaMrqL~~tG~ 378 (492)
--||||.++|.+..|=
T Consensus 8 ~RIVdaVi~qvkasga 23 (26)
T 2drn_C 8 SRIVDAVIEQVKAAGA 23 (26)
T ss_dssp HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 3689999999998873
No 57
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=22.62 E-value=1.7e+02 Score=27.36 Aligned_cols=62 Identities=0% Similarity=-0.151 Sum_probs=50.5
Q ss_pred EEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCcEEEEeCChhc--hHHHHHHHh-CCCEEE
Q 011155 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVREC-GASLLV 125 (492)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~lG~~L~v~~G~~~~--~l~~l~~~~-~~~~V~ 125 (492)
.+|+-|.....+|.+....+.+-+.+.-+.| .+.|..++++..+... .+..|.+.+ ++.-|-
T Consensus 35 ~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L-~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 35 IIYFGDIARIPYGTKSRATIQKFAAQTAKFL-IDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp EEEEECTTTCCCTTSCHHHHHHHHHHHHHHH-HHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 4788888777788888888888888889999 8899999999887655 467887877 776654
No 58
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=22.58 E-value=80 Score=28.31 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCC
Q 011155 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129 (492)
Q Consensus 89 L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 129 (492)
+=+.| ++.|+++.|..|.+......+++..++..++....
T Consensus 84 ~L~~L-~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~k 123 (211)
T 3ij5_A 84 GIRCL-ITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQS 123 (211)
T ss_dssp HHHHH-HHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCS
T ss_pred HHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcccC
Confidence 55677 88999999999999999999999999999887653
No 59
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=21.25 E-value=3.3e+02 Score=25.86 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHH-HHHHHHHHHhh--cCCcEEEEeC-ChhchHHHHHHHh---CCCEEEEc
Q 011155 80 GFMLRG-LRLLQRNIEET--FQILFFLFQG-EAEDNIPNFVREC---GASLLVTD 127 (492)
Q Consensus 80 ~Fl~es-L~~L~~~L~~~--lG~~L~v~~G-~~~~~l~~l~~~~---~~~~V~~~ 127 (492)
.-|.+. +..+++-| +. .|++.+...| ++.+++..|++.. |...+++.
T Consensus 97 e~L~~q~~~~ikell-~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS 150 (290)
T 1exn_A 97 KALDEQFFEYLKDAF-ELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLIS 150 (290)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEEC
T ss_pred hhHHHhhHHHHHHHH-HhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 445556 77788888 88 9999999998 8999999988764 55444443
No 60
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=20.62 E-value=1e+02 Score=33.55 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCcCh
Q 011155 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (492)
Q Consensus 91 ~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (492)
++| ++.|+.+.+..|++......++++.|++.++.+..|..
T Consensus 564 ~~L-~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~~P~~ 604 (736)
T 3rfu_A 564 LEL-QQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPED 604 (736)
T ss_dssp HHH-HHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSCCHHH
T ss_pred HHH-HHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEecCHHH
Confidence 345 77899999999999999999999999999999877754
No 61
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=20.28 E-value=2.4e+02 Score=24.48 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=39.4
Q ss_pred hcCCcEEEEeCChhchHHHHHHH---hCCCEEEEc---CCcChHHHHHHHHHHHHh-cCCCeEEEEeCceeEeC
Q 011155 96 TFQILFFLFQGEAEDNIPNFVRE---CGASLLVTD---FSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPV 162 (492)
Q Consensus 96 ~lG~~L~v~~G~~~~~l~~l~~~---~~~~~V~~~---~~p~~~~~~~d~~v~~~l-~~~v~~~~~~~~~l~~~ 162 (492)
++|+.+.+++.+.+..|-+.+++ -+++.|+.| ++-.. -+|+.++ .-++++.+++-..++..
T Consensus 56 ~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtS------vAlrDAL~~v~~P~VEVHiSNihaR 123 (167)
T 3kip_A 56 NNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTS------VGIRDALLGTAIPFIEVHITNVHQR 123 (167)
T ss_dssp CSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTC------HHHHHHHHHTTCCEEEEESSCGGGS
T ss_pred cCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceecc------HHHHHHHHhcCCCEEEEEcCCcccc
Confidence 36899999998887666555433 358889887 33233 2344444 24799999876655544
No 62
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=20.10 E-value=1.4e+02 Score=24.53 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEE
Q 011155 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (492)
Q Consensus 83 ~esL~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~ 126 (492)
+..|.++.+++ ++.|+.++.+..+..+.+.++++++++.-.+.
T Consensus 55 ~~~l~~~~~~~-~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 97 (163)
T 3gkn_A 55 GLDFNALLPEF-DKAGAKILGVSRDSVKSHDNFCAKQGFAFPLV 97 (163)
T ss_dssp HHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 57899999999 99999999888888888999999988764443
Done!