BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011156
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BTW|B Chain B, Crystal Structure Of Alr0975
Length = 254
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 10/213 (4%)
Query: 11 SPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAID- 69
SP I F S EG++L L + E FF L + TQ AYCG+A++ +LN+L I+
Sbjct: 41 SPNLIGFNSNEGEKLL---LTSRSREDFFPLSXQFVTQVNQAYCGVASIIXVLNSLGINA 97
Query: 70 PGRTWKGPWRWF-DDTMLDCCKPLSKIKAE-----GITFGKVACLAYCNGAKVEAFRTNE 123
P P+R F D K + I E G T ++ L G KV+ ++
Sbjct: 98 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVAKQGXTLDELGRLIASYGVKVKVNHASD 157
Query: 124 SSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFK 183
++I+DFR+ V + VI +Y R Q GH SP+ Y+ + D LI DV+R+K
Sbjct: 158 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXDVSRYK 217
Query: 184 YPPHWVPLALLWEAMDTIDKATGHPRGFMIISR 216
YPP WV LW+A +T+D + RGF+ +S+
Sbjct: 218 YPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250
>pdb|2BTW|A Chain A, Crystal Structure Of Alr0975
pdb|2BU3|A Chain A, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
pdb|2BU3|B Chain B, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
Length = 254
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 10/213 (4%)
Query: 11 SPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAID- 69
SP I F S EG++L L + E FF L + TQ AYCG+A++ +LN+L I+
Sbjct: 41 SPNLIGFNSNEGEKLL---LTSRSREDFFPLSXQFVTQVNQAYCGVASIIXVLNSLGINA 97
Query: 70 PGRTWKGPWRWF-DDTMLDCCKPLSKIKAE-----GITFGKVACLAYCNGAKVEAFRTNE 123
P P+R F D K + I E G T ++ L G KV+ ++
Sbjct: 98 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGXTLDELGRLIASYGVKVKVNHASD 157
Query: 124 SSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFK 183
++I+DFR+ V + VI +Y R Q GH SP+ Y+ + D LI DV+R+K
Sbjct: 158 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXDVSRYK 217
Query: 184 YPPHWVPLALLWEAMDTIDKATGHPRGFMIISR 216
YPP WV LW+A +T+D + RGF+ +S+
Sbjct: 218 YPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 258 ENLLSLVFKS------APVDLKEFIKWVAEVRRQDVA 288
E LL L+FK+ +DL EF K+ A V+ QD++
Sbjct: 35 EQLLQLIFKAIDIDGNGEIDLAEFTKFAAAVKEQDLS 71
>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
Length = 397
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 135 SCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLV-----LILDVARFKYPPHWV 189
S A S ++SS G G+G+FSP+ G+ D + + L RF +P V
Sbjct: 26 SEAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQSMTLTDGRF-FP---V 81
Query: 190 PLALLWEAMDTIDKAT 205
PL L E+ D I AT
Sbjct: 82 PLLCLLESADAIAGAT 97
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 246 PHRLKMNDVKDVENLLSLVFKSAPVDLKEFI 276
P+ +K+ DV EN L LVF+ +DLK+F+
Sbjct: 65 PNIVKLLDVIHTENKLYLVFEFLSMDLKDFM 95
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 246 PHRLKMNDVKDVENLLSLVFKSAPVDLKEFI 276
P+ +K+ DV EN L LVF+ +DLK+F+
Sbjct: 64 PNIVKLLDVIHTENKLYLVFEFLSMDLKDFM 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,504,690
Number of Sequences: 62578
Number of extensions: 589129
Number of successful extensions: 1213
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 13
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)