Query 011156
Match_columns 492
No_of_seqs 142 out of 192
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bu3_A ALR0975 protein; phytoc 100.0 8.2E-81 2.8E-85 609.6 19.2 215 1-219 32-253 (254)
2 3k8u_A Putative ABC transporte 98.2 1E-05 3.5E-10 71.5 10.5 134 44-217 7-140 (156)
3 3b79_A Toxin secretion ATP-bin 97.7 7.6E-05 2.6E-09 63.1 7.9 114 51-198 4-117 (129)
4 3zua_A CLD, alpha-hemolysin tr 97.7 0.00028 9.6E-09 61.3 10.5 116 48-198 8-123 (142)
5 3erv_A Putative C39-like pepti 97.5 0.0011 3.6E-08 64.5 12.5 162 36-217 30-227 (236)
6 1cv8_A Staphopain; cysteine pr 78.1 11 0.00038 35.3 9.4 113 44-171 14-131 (174)
7 1x9y_A Cysteine proteinase; ha 72.6 15 0.00053 37.9 9.6 111 43-167 198-313 (367)
8 1pxv_A Cysteine protease; hydr 72.1 18 0.00061 34.2 9.2 114 44-171 23-141 (183)
9 2h54_A Caspase-1; allosteric s 32.0 2.9E+02 0.01 25.1 10.9 75 104-200 69-148 (178)
10 1ukf_A Avirulence protein AVRP 29.3 83 0.0028 29.8 5.8 83 107-201 80-167 (188)
11 3bij_A Uncharacterized protein 25.9 2.1E+02 0.0073 27.4 8.3 47 104-150 35-83 (285)
12 2jml_A DNA binding domain/tran 25.0 38 0.0013 26.5 2.3 56 57-112 20-77 (81)
13 3bdk_A D-mannonate dehydratase 24.3 3.6E+02 0.012 27.5 10.0 68 104-171 68-161 (386)
14 3gp4_A Transcriptional regulat 23.7 50 0.0017 29.0 3.1 42 70-111 30-71 (142)
15 2vz4_A Tipal, HTH-type transcr 23.2 33 0.0011 28.4 1.7 43 69-111 28-70 (108)
16 1tz9_A Mannonate dehydratase; 22.9 2E+02 0.0069 28.0 7.6 48 102-149 57-117 (367)
17 3cuq_A Vacuolar-sorting protei 22.9 63 0.0022 31.3 3.8 89 61-156 46-147 (234)
18 1q06_A Transcriptional regulat 21.9 37 0.0013 29.4 1.9 43 69-111 27-69 (135)
19 1r8d_A Transcription activator 21.2 40 0.0014 27.9 1.8 44 69-112 29-72 (109)
No 1
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=100.00 E-value=8.2e-81 Score=609.64 Aligned_cols=215 Identities=33% Similarity=0.613 Sum_probs=193.1
Q ss_pred CCCcccccCCCCCccccCChhhHHHHHHHHhcCCcccchhchhcccccCCCCcccHHHHHHHHHhcccC-CCCCcCCCcc
Q 011156 1 MAGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAID-PGRTWKGPWR 79 (492)
Q Consensus 1 ~~sfyrR~LP~p~~I~fsS~EGk~lf~eAl~~g~~e~ff~L~~qF~TQ~~payCGvASLaMVLNAL~id-P~r~wkgpwr 79 (492)
|++||+|+||+ ++|+|+|+||++||.+| |+|++||+|++||+||+|++||||||++||||||++| |++.||||||
T Consensus 32 ~~~~~~~~lp~-~~i~~~S~eG~~ll~~a---~~~~~ff~L~~qf~tQ~n~ayCGlASlaMVLNALgid~P~~~wk~pwr 107 (254)
T 2bu3_A 32 MKLEQTLTLSP-NLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPYR 107 (254)
T ss_dssp --------CCT-TCEETTSHHHHHHHHHC---SBCTTHHHHHHHCCCCSSTTCHHHHHHHHHHHHTTCCC--------CC
T ss_pred hhhccccCCCh-hhccccCHHHHHHHHhC---CCchhhhcccccccccCCCCchHHHHHHHHHHhhCCCCCCccccCcee
Confidence 67999999995 89999999999999998 8999999999999999999999999999999999999 9999999999
Q ss_pred cc-ccchhc-----ccCChhhHhhcCCCHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeecccc
Q 011156 80 WF-DDTMLD-----CCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVF 153 (492)
Q Consensus 80 wf-~E~mLd-----~c~~le~V~~~GiTLdEla~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~ss~~~~vIVNysR~~L 153 (492)
|| +|+||+ ||++++.|+++||||+||+|||+|+|++|++|++++.++++||+.|++++++++++|||||+|++|
T Consensus 108 ~~Tqe~mld~~~~~~~~~~~~v~~~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~l 187 (254)
T 2bu3_A 108 VFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEI 187 (254)
T ss_dssp CCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGGG
T ss_pred eechHhHhcccccccccChhhhccCCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEcccc
Confidence 99 789998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccceeecCCCeEEEEecCCCCCCCeeeehHHHHHHhhcccCcCCCceeEEEEecCCC
Q 011156 154 KQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHK 219 (492)
Q Consensus 154 gQtG~GHFSPIGGY~~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~sgrsRG~ills~~~~ 219 (492)
+|+|+||||||||||+++|+||||||||||||||||++++||+||+++|++|||+||||+|++.++
T Consensus 188 ~q~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~D~~s~~~RG~~li~~~~~ 253 (254)
T 2bu3_A 188 GQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD 253 (254)
T ss_dssp TCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEEC---
T ss_pred CCCCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcccccCCCcceEEEEecccC
Confidence 999999999999999999999999999999999999999999999999999999999999998763
No 2
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=98.16 E-value=1e-05 Score=71.51 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=94.2
Q ss_pred cccccCCCCcccHHHHHHHHHhcccCCCCCcCCCccccccchhcccCChhhHhhcCCCHHHHHHHHHHcCCeEEEEecCC
Q 011156 44 YYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNE 123 (492)
Q Consensus 44 qF~TQ~~payCGvASLaMVLNAL~idP~r~wkgpwrwf~E~mLd~c~~le~V~~~GiTLdEla~LA~c~G~~V~~~ra~~ 123 (492)
-|..|.+..-||+|+++|+++-.|++-.. +.+.+.+ .+.+.|+|+.++...|+..|++++.++.+
T Consensus 7 p~~~Q~~~~dcglacLa~i~~~~g~~~s~----------~~L~~~~----~~~~~g~s~~~l~~~a~~~Gl~a~~~~~~- 71 (156)
T 3k8u_A 7 KLVPQIDTRDCGPAVLASVAKHYGSNYSI----------AYLRELS----KTNKQGTTALGIVEAAKKLGFETRSIKAD- 71 (156)
T ss_dssp CCCCCSSTTCHHHHHHHHHHHHTTCCCCH----------HHHHHHT----TCBTTBCCHHHHHHHHHHTTEEEEEEECC-
T ss_pred ceEECCCCCCHHHHHHHHHHHHhCCCCCH----------HHHHHHc----CCCCCCcCHHHHHHHHHHCCCeeEEEEee-
Confidence 45669999999999999999999976222 2222222 12468999999999999999999999854
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCCeeeehHHHHHHhhcccC
Q 011156 124 SSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDK 203 (492)
Q Consensus 124 ~sldeFR~~l~~~~ss~~~~vIVNysR~~LgQtG~GHFSPIGGY~~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~ 203 (492)
++.|+ + ..-.-.+|+...+. .|.|||--|.+++ .+.|+|.|++.- -.+.+++.++|-+.-.
T Consensus 72 --~~~~~--l----~~~~lP~I~~~~~~----g~~~hfvVl~~~~--~~~v~I~DP~~g-~~~~~ls~~ef~~~w~---- 132 (156)
T 3k8u_A 72 --MTLFD--Y----NDLTYPFIVHVIKG----KRLQHYYVVYGSQ--NNQLIIGDPDPS-VKVTRMSKERFQSEWT---- 132 (156)
T ss_dssp --GGGGG--C----TTCCSCEEEEEEET----TEEEEEEEEEEEE--TTEEEEEECSTT-TEEEEEEHHHHHHHEE----
T ss_pred --hhhhh--H----hcCCCCEEEEEEec----CCCcEEEEEEEEc--CCEEEEEcCCCC-cceEEEcHHHHHhhCc----
Confidence 33221 1 12234677766432 1358999998887 578999998642 1389999999766552
Q ss_pred cCCCceeEEEEecC
Q 011156 204 ATGHPRGFMIISRF 217 (492)
Q Consensus 204 ~sgrsRG~ills~~ 217 (492)
|++++-++
T Consensus 133 ------G~~l~~~p 140 (156)
T 3k8u_A 133 ------GLAIFLAP 140 (156)
T ss_dssp ------EEEEEEEE
T ss_pred ------eEEEEEEc
Confidence 77766543
No 3
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.74 E-value=7.6e-05 Score=63.10 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=82.9
Q ss_pred CCcccHHHHHHHHHhcccCCCCCcCCCccccccchhcccCChhhHhhcCCCHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Q 011156 51 PAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFR 130 (492)
Q Consensus 51 payCGvASLaMVLNAL~idP~r~wkgpwrwf~E~mLd~c~~le~V~~~GiTLdEla~LA~c~G~~V~~~ra~~~sldeFR 130 (492)
..-||+|+++|+++-.|++-.. +.+...+. ....|+|+.++...|+..|++++.++.+ ++++.
T Consensus 4 ~~dcgla~L~~i~~~~g~~~~~----------~~l~~~~~----~~~~g~s~~~l~~~a~~~Gl~~~~~~~~---~~~L~ 66 (129)
T 3b79_A 4 MKDPLLNSLIYVSRYYGLANSP----------EALVNGLP----LSDGKLTPFLLPRAAERAGLVAKENRAE---LEKIS 66 (129)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCH----------HHHHTTCC----CBTTBCCTTTHHHHHHHHTEEEEEEECC---GGGSC
T ss_pred cCCcHHHHHHHHHHHhCCCCCH----------HHHHhcCC----CcCCCCCHHHHHHHHHHCCCeEEEEECC---HHHCC
Confidence 4579999999999999977322 22323221 2367999999999999999999998854 44432
Q ss_pred HHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCCeeeehHHHHHHh
Q 011156 131 RHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAM 198 (492)
Q Consensus 131 ~~l~~~~ss~~~~vIVNysR~~LgQtG~GHFSPIGGY~~~tD~VLILDVARfKYPP~WVpl~~L~eAM 198 (492)
+ . .-..|+... .|||--|.+++.++..++|.|++. ...+.+++.++|-+.-
T Consensus 67 ~-----l---~lP~I~~~~--------~~h~vVl~~~~~~~~~~~i~dp~~-~~g~~~~~~~ef~~~w 117 (129)
T 3b79_A 67 S-----L---ILPAILVLK--------GGDSCVLNSINMETREAEVTTLES-GMVPISIPLEDLLEQY 117 (129)
T ss_dssp G-----G---GCSEEEEEG--------GGEEEEEEEEETTTTEEEEECTTT-TTSCEEEEHHHHHHHE
T ss_pred c-----C---CCCEEEEEc--------CCCEEEEEEEcCCCceEEEEccCC-CCCcEEeeHHHHHhhC
Confidence 1 1 125666553 369999999998766899999862 3568999999986644
No 4
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=97.66 E-value=0.00028 Score=61.34 Aligned_cols=116 Identities=13% Similarity=0.130 Sum_probs=81.9
Q ss_pred cCCCCcccHHHHHHHHHhcccCCCCCcCCCccccccchhcccCChhhHhhcCCCHHHHHHHHHHcCCeEEEEecCCCCHH
Q 011156 48 QSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSID 127 (492)
Q Consensus 48 Q~~payCGvASLaMVLNAL~idP~r~wkgpwrwf~E~mLd~c~~le~V~~~GiTLdEla~LA~c~G~~V~~~ra~~~sld 127 (492)
|.+..-||+|+++|+++-.|++-.. +.+...+ .+.+.|+++.++...|+..|++++.++. +++
T Consensus 8 ~~~~~dcglacLa~i~~~~g~~~s~----------~~L~~~~----~~~~~g~s~~~l~~aa~~~Gl~a~~~~~---~~~ 70 (142)
T 3zua_A 8 SCHKIDYGLYALEILAQYHNVSVNP----------EEIKHRF----DTDGTGLGLTSWLLAAKSLELKVKQVKK---TID 70 (142)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCCCCH----------HHHHHHT----CTTSSCCCHHHHHHHHHTTTEEEEEEEC---CHH
T ss_pred CCCCCCcHHHHHHHHHHHcCCCCCH----------HHHHHHc----CCCcCCcCHHHHHHHHHHCCCeeEEeec---CHH
Confidence 5566789999999999999976222 2222222 1346899999999999999999999885 455
Q ss_pred HHHHHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCCeeeehHHHHHHh
Q 011156 128 DFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAM 198 (492)
Q Consensus 128 eFR~~l~~~~ss~~~~vIVNysR~~LgQtG~GHFSPIGGY~~~tD~VLILDVARfKYPP~WVpl~~L~eAM 198 (492)
++.+ -.-..|+.. .++.||- |.+++.+.+.++|.|++.- .+.+++.++|-+.-
T Consensus 71 ~L~~--------l~lP~Il~~-------~~g~~~V-v~~~~~~~~~~~I~dP~~g--~~~~~s~~ef~~~w 123 (142)
T 3zua_A 71 RLNF--------ISLPALVWR-------EDGRHFI-LTKVSKEANRYLIFDLEQR--NPRVLEQSEFEALY 123 (142)
T ss_dssp HHTT--------SSSSEEECC-------TTSCCEE-EEEEETTTTEEEEEETTTT--EEEEEEHHHHHHHC
T ss_pred HHhc--------CCCCEEEEE-------cCCCEEE-EEEEeCCCCEEEEEcCCCC--CcEEecHHHHHhhC
Confidence 5432 123566632 2234665 4558877789999998752 28999999986654
No 5
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=97.46 E-value=0.0011 Score=64.48 Aligned_cols=162 Identities=19% Similarity=0.140 Sum_probs=98.8
Q ss_pred ccchhchhcccccCC--CCcccHHHHHHHHHhcccCCCCC-----c-CC----------CccccccchhcccCChhhHhh
Q 011156 36 EGFFKLISYYQTQSE--PAYCGLATLAVILNALAIDPGRT-----W-KG----------PWRWFDDTMLDCCKPLSKIKA 97 (492)
Q Consensus 36 e~ff~L~~qF~TQ~~--payCGvASLaMVLNAL~idP~r~-----w-kg----------pwrwf~E~mLd~c~~le~V~~ 97 (492)
+.+.-|..-|..|.. |.-|++|||+|+|+..|++.... + +- |.+=|--++...- -..
T Consensus 30 ~~~~ll~Vp~~~Q~~~~~~gCe~tSlam~L~y~G~~~~~~~la~~l~~~p~~~~g~~gnP~~gFvG~p~~~~-----~~g 104 (236)
T 3erv_A 30 EKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFS-----ESG 104 (236)
T ss_dssp CCEECTTSCCCCCTTTCTTCHHHHHHHHHHHHTTCCCCHHHHHHHSCEECSEETTEECCTTTSEEBCSSCTT-----SCB
T ss_pred CceEEeCCCccccCCCCCCCCHHHHHHHHHHHcCcCCCHHHHHHHHhhCcccccCCCCCCccCccCCccccC-----CCc
Confidence 445555556666764 68899999999999999974321 1 11 2222222221110 123
Q ss_pred cCCCHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeec--ccc------------cc---cCCc
Q 011156 98 EGITFGKVACLAYCNG-AKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHR--GVF------------KQ---TGSG 159 (492)
Q Consensus 98 ~GiTLdEla~LA~c~G-~~V~~~ra~~~sldeFR~~l~~~~ss~~~~vIVNysR--~~L------------gQ---tG~G 159 (492)
.|+--..|..+|+..+ .++ +.-...+++++.+.|. .+..|||=..- +.+ |. +..+
T Consensus 105 ~giy~~~i~~~a~~y~~~~~--~dltG~sl~~L~~~I~-----~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~~~~~ 177 (236)
T 3erv_A 105 YGVYHGPLFQLAKKYLPNKA--VDLTGKSIEELYKSVK-----AGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNE 177 (236)
T ss_dssp CCCCHHHHHHHHHHHCTTTE--EECTTSCHHHHHHHHH-----TTCCEEEEEETTSSCCCGGGCEEEEETTEEEEECTTE
T ss_pred ceeecHHHHHHHHHHhhcce--eecCCCCHHHHHHHHH-----CCCeEEEEEeCCcccccccccceeecCCCceeeccCC
Confidence 5777788999998875 233 3334568888888774 46677773211 111 11 2467
Q ss_pred cccccceeecCCCeEEEEecCCCCCCCeeeehHHHHHHhhcccCcCCCceeEEEEecC
Q 011156 160 HFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRF 217 (492)
Q Consensus 160 HFSPIGGY~~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~sgrsRG~ills~~ 217 (492)
||--|-|||. +.|.|.|++.- ...++++.+++-++-.... .+.+.++.+.
T Consensus 178 H~VVl~GYd~--~~vyi~DP~~g-~~~~~vs~~eFe~~w~~~G-----~~AI~~l~~~ 227 (236)
T 3erv_A 178 HCVVLIGYDQ--ESVYIRDPLKD-SLDVKVPREKFEQAWVQMG-----SQAISYVKRS 227 (236)
T ss_dssp EEEEEEEECS--SEEEEECTTSC-CSCCEEEHHHHHHHHHHTT-----CCEEEECSSC
T ss_pred eEEEEEEEeC--CEEEEECCCCC-CccEEEcHHHHHHHHHhcC-----CEEEEEECCc
Confidence 9999999997 69999999863 2358999877655444221 3455555443
No 6
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=78.07 E-value=11 Score=35.34 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=82.4
Q ss_pred cccccCCCCcccHHHHHHHHHhcccCCCCCcCCCccccccchhccc---CChhhHhhcCCCHHHHHHHHHHcCCeEEEEe
Q 011156 44 YYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCC---KPLSKIKAEGITFGKVACLAYCNGAKVEAFR 120 (492)
Q Consensus 44 qF~TQ~~payCGvASLaMVLNAL~idP~r~wkgpwrwf~E~mLd~c---~~le~V~~~GiTLdEla~LA~c~G~~V~~~r 120 (492)
-.+||-+...|.==+++.+||++.-. -...-+.|+..- .+.+.....|+|.+|+...++..|..++ +.
T Consensus 14 I~ETQg~~pWCa~Ya~aailN~~~~~--------~~~~A~~imr~~yPn~S~~~l~~~~~t~~e~iky~~s~g~~~~-~~ 84 (174)
T 1cv8_A 14 IRETQGNNGWCAGYTMSALLNATYNT--------NKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQ-LL 84 (174)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHTC--------CCCCHHHHHHHHCSSCCHHHHHHCCCCHHHHHHHHHHTTCCCE-EE
T ss_pred EeeccCCCchHHHHHHHHHHHhhhcc--------CcCCHHHHHHHHCCCCCHHHHhhcCCCHHHHHHHHHHcCCChh-hh
Confidence 45799999999999999999999832 122335555432 2345667899999999999999987554 44
Q ss_pred cCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCccccccceeecCC
Q 011156 121 TNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQT--GSGHFSPIGGYHARK 171 (492)
Q Consensus 121 a~~~sldeFR~~l~~~~ss~~~~vIVNysR~~LgQt--G~GHFSPIGGY~~~t 171 (492)
....++++..+.++ +++.+.++-+|-. .++ -.||==-|.||-...
T Consensus 85 n~~ls~~eV~~~~~-----~nk~i~i~~~~ve-~~~~~~~gHAlav~Gy~~~~ 131 (174)
T 1cv8_A 85 NRMTTYNEVDNLTK-----NNKGIAILGSRVE-SRNGMHAGHAMAVVGNAKLN 131 (174)
T ss_dssp SSCCCHHHHHHHHH-----TTCCEEEEEEESS-CBTTBCCEEEEEEEEEEEET
T ss_pred cCCCCHHHHHHHHh-----cCCceEEEccccc-CCCCCCCceeEEEEeeeeec
Confidence 45678998887774 5567777777763 334 378988888998754
No 7
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=72.60 E-value=15 Score=37.88 Aligned_cols=111 Identities=10% Similarity=0.120 Sum_probs=81.6
Q ss_pred hcccccCCCCcccHHHHHHHHHhcccCCCCCcCCCccccccchhccc---CChhhHhhcCCCHHHHHHHHHHcCCeEEEE
Q 011156 43 SYYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCC---KPLSKIKAEGITFGKVACLAYCNGAKVEAF 119 (492)
Q Consensus 43 ~qF~TQ~~payCGvASLaMVLNAL~idP~r~wkgpwrwf~E~mLd~c---~~le~V~~~GiTLdEla~LA~c~G~~V~~~ 119 (492)
.-.+||-+..+|.=-+++.+||++.-. -.+.-+.|+..- .+.+.....|++++|+-..++..|..++ +
T Consensus 198 ~I~ETQg~~pWCa~Ya~aailN~~~~t--------~~~nA~~iMr~~yPN~S~~~l~~ts~~~~q~Iky~qsyG~~~~-~ 268 (367)
T 1x9y_A 198 KIREQQFDNSWCAGFSMAALLNATKNT--------DTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIH-Y 268 (367)
T ss_dssp CCCCCCSSSSCHHHHHHHHHHHHHTTC--------SCCCHHHHHHHHCTTSCTTTGGGCCCCHHHHHHHHHHTTEEEE-E
T ss_pred EeeeccCCCchHHHHHHHHHHHhhhcc--------CcCCHHHHHHHHCCCCChhHHhhcCCCHHHHHHHHHHhCcchh-h
Confidence 445799999999999999999999832 123345555422 2334566799999999999999898765 4
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCcccccccee
Q 011156 120 RTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQT--GSGHFSPIGGY 167 (492)
Q Consensus 120 ra~~~sldeFR~~l~~~~ss~~~~vIVNysR~~LgQt--G~GHFSPIGGY 167 (492)
.....++++..+.++ .++.|.|.-++..=... -.||-=-+.||
T Consensus 269 ~n~~ls~deVk~~id-----~Nk~I~v~~~~v~~~~n~~~~gHAlavvGy 313 (367)
T 1x9y_A 269 QEGVPSYNQVDQLTK-----DNVGIMILAQSVSQNPNDPHLGHALAVVGN 313 (367)
T ss_dssp EESCCCHHHHHHHHH-----TTCCEEEEEEETTSCSSSCCCSEEEEEEEE
T ss_pred hcCCCCHHHHHHHHh-----cCCcEEEEccccccCCCCccCceeEEEEec
Confidence 455689999887775 44688888877432333 37898888899
No 8
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=72.10 E-value=18 Score=34.20 Aligned_cols=114 Identities=9% Similarity=0.070 Sum_probs=81.2
Q ss_pred cccccCCCCcccHHHHHHHHHhcccCCCCCcCCCccccccchhccc---CChhhHhhcCCCHHHHHHHHHHcCCeEEEEe
Q 011156 44 YYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCC---KPLSKIKAEGITFGKVACLAYCNGAKVEAFR 120 (492)
Q Consensus 44 qF~TQ~~payCGvASLaMVLNAL~idP~r~wkgpwrwf~E~mLd~c---~~le~V~~~GiTLdEla~LA~c~G~~V~~~r 120 (492)
--+||-+...|.=-+++.+||+..-. . .+.-+.|+..- .+.+.....|+|.+|+-..++..|...+. .
T Consensus 23 I~ETQg~~~WCa~Y~~aAilN~~~nt--~------~~nA~~iMr~~yPN~s~~~l~~t~~~~~q~Iky~~s~G~~~~~-~ 93 (183)
T 1pxv_A 23 IREQQFDNSWAAGFSMAALLNATKNT--D------TYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHY-Q 93 (183)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHTC--S------CCCHHHHHHHHSTTSCTTTGGGCCBCHHHHHHHHHHTTCCCEE-E
T ss_pred eeeccCcCchHHHHHHHHHHHhhhcc--C------cCCHHHHHHHHCCCCChhHHhhcCCCHHHHHHHHHHcCcChhH-h
Confidence 34799999999999999999999832 1 12234444322 12345677999999999999999977654 3
Q ss_pred cCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCccccccceeecCC
Q 011156 121 TNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQT--GSGHFSPIGGYHARK 171 (492)
Q Consensus 121 a~~~sldeFR~~l~~~~ss~~~~vIVNysR~~LgQt--G~GHFSPIGGY~~~t 171 (492)
....++++..+.+. .++.|.+.=++..=.++ -.||-=-|.||-...
T Consensus 94 nr~ls~neV~~~i~-----~Nk~I~v~~~~v~e~~~~~~~gHA~av~Gya~~~ 141 (183)
T 1pxv_A 94 EGVPSYNQVDQLTK-----DNVGIMILAQSVSQNPNDPHLGHALAVVGNAKIN 141 (183)
T ss_dssp ESCCCHHHHHHHHH-----TTCCEEEEEECCCSSTTSCCCEEEEEEEEEEEET
T ss_pred cCCCCHHHHHHHHh-----cCCcEEEEccccccCCCCccCceeEEEEeeeecC
Confidence 34689999888885 45567776666433444 378988888887665
No 9
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=31.97 E-value=2.9e+02 Score=25.10 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhc-----CCCceEEEEeecccccccCCccccccceeecCCCeEEEEe
Q 011156 104 KVACLAYCNGAKVEAFRTNESSIDDFRRHVISCAS-----SEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILD 178 (492)
Q Consensus 104 Ela~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~s-----s~~~~vIVNysR~~LgQtG~GHFSPIGGY~~~tD~VLILD 178 (492)
.+..+.+..|.+|.++. +.+.+++++.|++... +.++.+++=.+.+.- |+ |-|-|..
T Consensus 69 ~L~~~f~~LgF~V~~~~--dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~-----g~---i~g~D~~-------- 130 (178)
T 2h54_A 69 GMTMLLQNLGYSVDVKK--NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIR-----EG---ICGKKHS-------- 130 (178)
T ss_dssp HHHHHHHHTTCEEEEEE--SCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCS-----SC---EECTTCC--------
T ss_pred HHHHHHHHCCCEEEEec--CCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCC-----Ce---EEeecCC--------
Confidence 67788889999998776 6899999999998542 345555554433221 12 2222211
Q ss_pred cCCCCCCCeeeehHHHHHHhhc
Q 011156 179 VARFKYPPHWVPLALLWEAMDT 200 (492)
Q Consensus 179 VARfKYPP~WVpl~~L~eAM~t 200 (492)
.+.+-.|+++++++.++.
T Consensus 131 ----~~~~~~v~l~~I~~~f~~ 148 (178)
T 2h54_A 131 ----EQVPDILQLNAIFNMLNT 148 (178)
T ss_dssp ----SSSCCEECHHHHHHHHST
T ss_pred ----cccCcEEEHHHHHHHHhh
Confidence 245668999999999984
No 10
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=29.28 E-value=83 Score=29.82 Aligned_cols=83 Identities=8% Similarity=0.053 Sum_probs=53.5
Q ss_pred HHHHHcCCeE----E-EEecCCCCHHHHHHHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCC
Q 011156 107 CLAYCNGAKV----E-AFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVAR 181 (492)
Q Consensus 107 ~LA~c~G~~V----~-~~ra~~~sldeFR~~l~~~~ss~~~~vIVNysR~~LgQtG~GHFSPIGGY~~~tD~VLILDVAR 181 (492)
.+++..|++. + .|+.. .=..|-+.+......++...++++.+. .|++| -||- ..+.+.+.++|+
T Consensus 80 ~~l~~aGL~p~~e~~~~y~s~--~~~a~~~~v~~~i~~~g~~hllsl~f~----~g~aH--aia~-S~~g~~~tlFDP-- 148 (188)
T 1ukf_A 80 AVIEDAGFSLRREPKTVHASG--GSAQLGQTVAHDVAQSGRKHLLSLRFA----NVQGH--AIAC-SCEGSQFKLFDP-- 148 (188)
T ss_dssp HHHHHTTCEECSCCEEEECCS--CHHHHHHHHHHHHCSTTCEEEEEEEET----TTEEE--EEEE-EEETTEEEEEET--
T ss_pred HHHHHcCCcccccccceeecc--cchhhhHHHHHHHhhCCCceEEEEEec----CCCce--eEEe-ccCCCeEEEeCC--
Confidence 4556667654 2 23322 222577455555556666666666664 26789 7775 478899999998
Q ss_pred CCCCCeeeehHHHHHHhhcc
Q 011156 182 FKYPPHWVPLALLWEAMDTI 201 (492)
Q Consensus 182 fKYPP~WVpl~~L~eAM~ti 201 (492)
.|+-|=|+.+.+-+.+..+
T Consensus 149 -N~GEF~v~s~~~~dliqsL 167 (188)
T 1ukf_A 149 -NLGEFQSSRSAAPQLIKGL 167 (188)
T ss_dssp -TTEEEEEETTTHHHHHHHH
T ss_pred -CCceeeccHHHHHHHHHHH
Confidence 4999999977766666543
No 11
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=25.90 E-value=2.1e+02 Score=27.38 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHh--cCCCceEEEEeec
Q 011156 104 KVACLAYCNGAKVEAFRTNESSIDDFRRHVISCA--SSEDCHVISSYHR 150 (492)
Q Consensus 104 Ela~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~--ss~~~~vIVNysR 150 (492)
.++.+++..|.+|.....++.+.+.+++.+.... ..+++.+++.|+.
T Consensus 35 ~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~~~~~D~~~~yfSG 83 (285)
T 3bij_A 35 DMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKALGKGDIFMLSYSG 83 (285)
T ss_dssp HHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHHCCTTCEEEEEEES
T ss_pred HHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence 4555667779887666655568888887776543 2467899999974
No 12
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=25.04 E-value=38 Score=26.51 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=34.1
Q ss_pred HHHHHHHHhccc-CCCCCcCCCccccccchhcccCChhhHh-hcCCCHHHHHHHHHHc
Q 011156 57 ATLAVILNALAI-DPGRTWKGPWRWFDDTMLDCCKPLSKIK-AEGITFGKVACLAYCN 112 (492)
Q Consensus 57 ASLaMVLNAL~i-dP~r~wkgpwrwf~E~mLd~c~~le~V~-~~GiTLdEla~LA~c~ 112 (492)
.++.---.-.|+ .|.+.-.+.+|+|+++-+..-.-+...+ +.|++++|+..++...
T Consensus 20 ~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 20 ATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp HHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 344443343243 4555432668888875554333334556 8999999999887654
No 13
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=24.25 E-value=3.6e+02 Score=27.48 Aligned_cols=68 Identities=12% Similarity=0.263 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCeEEEEec-----C--------CCCHHHHHHHHHHHhcCCCceEEEEee------ccccc-ccCCcc---
Q 011156 104 KVACLAYCNGAKVEAFRT-----N--------ESSIDDFRRHVISCASSEDCHVISSYH------RGVFK-QTGSGH--- 160 (492)
Q Consensus 104 Ela~LA~c~G~~V~~~ra-----~--------~~sldeFR~~l~~~~ss~~~~vIVNys------R~~Lg-QtG~GH--- 160 (492)
++..+++.+|+++.+... + +..++.|++.|..+..-.-..|+.||. |..+. ...+|.
T Consensus 68 ~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~~r~~~ie~~k~~i~~aa~lGi~~v~~nf~p~~~w~rt~~~~~~~~G~~~~ 147 (386)
T 3bdk_A 68 ELKKMVEEAGLEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGIPVVCYNFMPVFDWTRSDLHHPLPDGSTSL 147 (386)
T ss_dssp HHHHHHHTTTCEEEEEECCCCCHHHHTTCTTHHHHHHHHHHHHHHHHTTTCCEEEECCCSSCSCCCSEEEEECTTSCEEE
T ss_pred HHHHHHHHcCCEEEEEeccccccccccCcHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccccccccccccccCCCcccc
Confidence 556667888999876531 1 124556777776654333335555765 55442 112332
Q ss_pred -c--cccceeecCC
Q 011156 161 -F--SPIGGYHARK 171 (492)
Q Consensus 161 -F--SPIGGY~~~t 171 (492)
| +++++||++.
T Consensus 148 ~f~~~~~~~~d~~~ 161 (386)
T 3bdk_A 148 AFLKSDLAGVDPVA 161 (386)
T ss_dssp EEEGGGGSSCCC--
T ss_pred ccchhhhhcccchh
Confidence 3 5778887654
No 14
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.75 E-value=50 Score=28.99 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=29.2
Q ss_pred CCCCcCCCccccccchhcccCChhhHhhcCCCHHHHHHHHHH
Q 011156 70 PGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYC 111 (492)
Q Consensus 70 P~r~wkgpwrwf~E~mLd~c~~le~V~~~GiTLdEla~LA~c 111 (492)
|...-.+.+|+|+++-++.-.-+-..+..|++++++..++..
T Consensus 30 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 30 PIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 423336779999986665333334567899999999988764
No 15
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=23.20 E-value=33 Score=28.41 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=28.9
Q ss_pred CCCCCcCCCccccccchhcccCChhhHhhcCCCHHHHHHHHHH
Q 011156 69 DPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYC 111 (492)
Q Consensus 69 dP~r~wkgpwrwf~E~mLd~c~~le~V~~~GiTLdEla~LA~c 111 (492)
.|.+.-.+.+|+|+++-+..-.-+...+..|++++++..++..
T Consensus 28 ~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 28 VPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 3554345678999875554332233457899999999998864
No 16
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=22.93 E-value=2e+02 Score=28.04 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCeEEEEecCCC-------------CHHHHHHHHHHHhcCCCceEEEEee
Q 011156 102 FGKVACLAYCNGAKVEAFRTNES-------------SIDDFRRHVISCASSEDCHVISSYH 149 (492)
Q Consensus 102 LdEla~LA~c~G~~V~~~ra~~~-------------sldeFR~~l~~~~ss~~~~vIVNys 149 (492)
+.++..+++.+|+++..+..... .++.+++.+..+..-.-..|++||.
T Consensus 57 ~~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~n~~ 117 (367)
T 1tz9_A 57 IQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFK 117 (367)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHCCCeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34667778889999887653221 2445566665554333345666654
No 17
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=22.86 E-value=63 Score=31.35 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=57.8
Q ss_pred HHHHhcccCCCCCcCCCc-------ccccc---chhcccCChhhHhhc-C-CCHHHHHHHHH-HcCCeEEEEecCCCCHH
Q 011156 61 VILNALAIDPGRTWKGPW-------RWFDD---TMLDCCKPLSKIKAE-G-ITFGKVACLAY-CNGAKVEAFRTNESSID 127 (492)
Q Consensus 61 MVLNAL~idP~r~wkgpw-------rwf~E---~mLd~c~~le~V~~~-G-iTLdEla~LA~-c~G~~V~~~ra~~~sld 127 (492)
-...++||||-..-||-| .||-| .+.+.|.. ...+. | |+++++.|.+. ..|... ...|-|
T Consensus 46 ~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~--tr~~nGGli~L~el~~~~~r~Rg~~~-----~~IS~d 118 (234)
T 3cuq_A 46 DMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLA--LKHRNGGLITLEELHQQVLKGRGKFA-----QDVSQD 118 (234)
T ss_dssp HHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHSSEEEHHHHHHHHHHTTTTCC-----SSCCHH
T ss_pred HHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHH--HHHhcCCeeEHHHHHHHHHHhcCCcc-----CccCHH
Confidence 346799999977667766 45554 56677753 22333 4 89999999884 446411 468999
Q ss_pred HHHHHHHHHhcCCCceEEEEeeccccccc
Q 011156 128 DFRRHVISCASSEDCHVISSYHRGVFKQT 156 (492)
Q Consensus 128 eFR~~l~~~~ss~~~~vIVNysR~~LgQt 156 (492)
+..+.++....=.+.+-|+.|..+.+-|+
T Consensus 119 Di~rAik~L~~LG~g~~v~~~~g~~~VqS 147 (234)
T 3cuq_A 119 DLIRAIKKLKALGTGFGIIPVGGTYLIQS 147 (234)
T ss_dssp HHHHHHHHHGGGBTTCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEECCEEEEEe
Confidence 99999986532123477777664444444
No 18
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.95 E-value=37 Score=29.38 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=28.8
Q ss_pred CCCCCcCCCccccccchhcccCChhhHhhcCCCHHHHHHHHHH
Q 011156 69 DPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYC 111 (492)
Q Consensus 69 dP~r~wkgpwrwf~E~mLd~c~~le~V~~~GiTLdEla~LA~c 111 (492)
.|...-.+.+|+|+++-++.-.-+...+..|++++|+..++..
T Consensus 27 ~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 27 TPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp CCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 3442335779999876554332333457899999999998864
No 19
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.21 E-value=40 Score=27.90 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=28.9
Q ss_pred CCCCCcCCCccccccchhcccCChhhHhhcCCCHHHHHHHHHHc
Q 011156 69 DPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCN 112 (492)
Q Consensus 69 dP~r~wkgpwrwf~E~mLd~c~~le~V~~~GiTLdEla~LA~c~ 112 (492)
.|.+.-.+.+|+|+++-+..-.-+...+..|++++++..++...
T Consensus 29 ~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~~ 72 (109)
T 1r8d_A 29 NPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHP 72 (109)
T ss_dssp CCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCT
T ss_pred CCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCC
Confidence 35443356789998755543222334567899999999988653
Done!