Query 011159
Match_columns 492
No_of_seqs 190 out of 1195
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 22:01:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 1.7E-41 5.9E-46 303.9 8.2 123 5-127 4-130 (134)
2 2crr_A Stromal membrane-associ 100.0 5.4E-41 1.8E-45 302.9 7.4 121 7-127 8-132 (141)
3 2olm_A Nucleoporin-like protei 100.0 1.6E-39 5.4E-44 293.0 10.9 119 8-127 5-130 (140)
4 3jue_A Arfgap with coiled-coil 100.0 5.3E-36 1.8E-40 300.0 8.9 122 6-127 22-152 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 1.5E-35 5E-40 300.6 10.9 120 7-127 13-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 5.3E-35 1.8E-39 263.3 7.8 108 14-121 22-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 6.6E-34 2.3E-38 259.1 7.2 95 10-104 11-106 (149)
8 3dwd_A ADP-ribosylation factor 100.0 1.8E-33 6.2E-38 255.8 9.9 115 10-124 20-145 (147)
9 2p57_A GTPase-activating prote 100.0 1.9E-32 6.5E-37 248.4 8.2 108 13-120 22-131 (144)
10 3sub_A ADP-ribosylation factor 100.0 1.4E-32 4.8E-37 253.4 6.9 113 10-122 3-117 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 3.2E-31 1.1E-35 255.1 10.8 120 6-125 20-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 2.2E-31 7.5E-36 271.0 7.8 119 8-126 3-129 (497)
13 1dcq_A PYK2-associated protein 100.0 1.1E-30 3.8E-35 248.4 9.1 114 13-126 2-123 (278)
14 3o47_A ADP-ribosylation factor 100.0 6.2E-29 2.1E-33 244.1 8.4 93 9-101 18-110 (329)
15 1u5k_A Hypothetical protein; O 87.8 0.48 1.7E-05 44.5 4.7 77 25-118 147-223 (244)
16 1gnf_A Transcription factor GA 66.0 3.1 0.00011 31.1 2.1 38 26-63 2-40 (46)
17 1tjl_A DNAK suppressor protein 58.8 7.9 0.00027 35.1 3.9 35 25-59 108-143 (151)
18 3dfx_A Trans-acting T-cell-spe 55.4 5.4 0.00018 31.7 1.9 39 25-63 4-43 (63)
19 2vut_I AREA, nitrogen regulato 55.3 5.8 0.0002 29.2 2.0 35 29-63 2-37 (43)
20 4gat_A Nitrogen regulatory pro 52.5 6.8 0.00023 31.3 2.1 38 26-63 7-45 (66)
21 4hc9_A Trans-acting T-cell-spe 50.1 6.4 0.00022 34.2 1.8 36 28-63 5-41 (115)
22 2kgo_A Uncharacterized protein 43.0 3.8 0.00013 35.7 -0.8 33 27-59 55-88 (108)
23 2kae_A GATA-type transcription 36.9 8.7 0.0003 31.1 0.5 36 27-63 7-45 (71)
24 1d4u_A Nucleotide excision rep 34.6 6.6 0.00023 34.2 -0.6 32 27-58 4-36 (111)
25 1ffk_W Ribosomal protein L37AE 32.1 22 0.00075 29.0 2.1 40 15-56 13-53 (73)
26 3g9m_A Glucocorticoid receptor 29.2 17 0.00058 30.1 1.0 30 27-59 1-30 (90)
27 2lr8_A CAsp8-associated protei 32.7 14 0.00047 30.2 0.0 19 331-349 47-68 (70)
28 4glq_A Methyl-accepting chemot 25.6 19 0.00065 31.7 0.7 26 75-100 132-157 (171)
29 3dzy_D Peroxisome proliferator 25.2 29 0.00099 35.4 2.1 31 26-59 48-78 (419)
30 2nll_B Protein (thyroid hormon 23.7 29 0.001 29.5 1.5 29 29-60 2-30 (103)
31 1zbd_B Rabphilin-3A; G protein 23.2 30 0.001 30.7 1.5 33 26-58 53-90 (134)
32 4hc9_A Trans-acting T-cell-spe 22.8 43 0.0015 29.0 2.4 38 26-63 57-95 (115)
33 3j21_d 50S ribosomal protein L 22.3 41 0.0014 28.4 2.1 28 28-56 33-77 (89)
34 2ebl_A COUP transcription fact 22.0 36 0.0012 28.2 1.7 32 26-60 5-36 (89)
35 2nnu_B HUNK1 protein, bromodom 21.2 27 0.00091 23.5 0.6 13 336-348 8-20 (26)
36 1hcq_A Protein (estrogen recep 20.5 42 0.0014 27.5 1.8 31 27-60 3-33 (84)
37 2han_B Ecdysone receptor; tran 20.4 35 0.0012 29.7 1.4 31 27-60 7-37 (119)
38 1dl6_A Transcription factor II 20.2 30 0.001 26.5 0.8 28 29-57 12-39 (58)
39 1r4i_A Androgen receptor; AR, 20.0 34 0.0012 29.3 1.2 33 25-60 4-36 (105)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=303.88 Aligned_cols=123 Identities=47% Similarity=0.889 Sum_probs=107.8
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHH
Q 011159 5 ANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVI 84 (492)
Q Consensus 5 a~~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~L 84 (492)
++.|++.+++++++|++|++.|+|+.|+|||+++|+|+|+|||||||++|+|+||.||+|||+||||+||+|++++|++|
T Consensus 4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM 83 (134)
T ss_dssp ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCcHHHHHHHhhcCCCCCC----hhhHHHHHHHHhhhCccccCCC
Q 011159 85 QSMGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGG 127 (492)
Q Consensus 85 k~gGN~~aN~iwEA~lPp~~D----r~~~e~FIRaKYeeKrF~~~~~ 127 (492)
+.+||.++|.|||+++|+.+. ...+|+|||+||++|+|+.+..
T Consensus 84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 999999999999999986542 3468999999999999997643
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=5.4e-41 Score=302.90 Aligned_cols=121 Identities=50% Similarity=0.979 Sum_probs=112.6
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHh
Q 011159 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (492)
Q Consensus 7 ~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~ 86 (492)
..++++++++++|++|++.|+|+.|||||+++|+|||+|||||||++|+||||.||+|||+||||+||+|++++|++|+.
T Consensus 8 ~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~ 87 (141)
T 2crr_A 8 KAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD 87 (141)
T ss_dssp CTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHHHHHhhcCCCCCC----hhhHHHHHHHHhhhCccccCCC
Q 011159 87 MGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGG 127 (492)
Q Consensus 87 gGN~~aN~iwEA~lPp~~D----r~~~e~FIRaKYeeKrF~~~~~ 127 (492)
+||.++|+|||+++|+... ...+|+|||+||++++|+.+..
T Consensus 88 ~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 88 MGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp THHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGG
T ss_pred HccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999986542 3468999999999999997654
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.6e-39 Score=293.03 Aligned_cols=119 Identities=31% Similarity=0.671 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhh
Q 011159 8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87 (492)
Q Consensus 8 SKrl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~g 87 (492)
.++++++++++|++|++.|+|+.|+|||+++|+|+|+|||||||++|+||||.||+| |+||||+||+|++++|++|+.+
T Consensus 5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~ 83 (140)
T 2olm_A 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKH 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHh
Confidence 456777999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred CcHHHHHHHhhcCCC-------CCChhhHHHHHHHHhhhCccccCCC
Q 011159 88 GNEKSNSYWEAELPP-------NYDRVGIENFIRAKYEEKRWIPRGG 127 (492)
Q Consensus 88 GN~~aN~iwEA~lPp-------~~Dr~~~e~FIRaKYeeKrF~~~~~ 127 (492)
||.++|.|||+++++ ..|...+++||++||++++|+.+..
T Consensus 84 GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 84 GNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp HHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred ccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 999999999998753 2245578899999999999997543
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=5.3e-36 Score=300.01 Aligned_cols=122 Identities=40% Similarity=0.742 Sum_probs=105.9
Q ss_pred cccHHH-HHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHH
Q 011159 6 NVSKEL-NAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVI 84 (492)
Q Consensus 6 ~~SKrl-~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~L 84 (492)
.++++. +++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||.||+|||+||||+||.|++++|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~ 101 (368)
T 3jue_A 22 GMARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM 101 (368)
T ss_dssp ----------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHH
Confidence 344444 4458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCcHHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccccCCC
Q 011159 85 QSMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRGG 127 (492)
Q Consensus 85 k~gGN~~aN~iwEA~lPp~--------~Dr~~~e~FIRaKYeeKrF~~~~~ 127 (492)
+.+||.++|+|||+.+++. .+...+++||++||++|+|+.+..
T Consensus 102 ~~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 102 CELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 9999999999999998642 234578999999999999997654
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=1.5e-35 Score=300.60 Aligned_cols=120 Identities=41% Similarity=0.743 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHh
Q 011159 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (492)
Q Consensus 7 ~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~ 86 (492)
-+++++++++++|++|++.|+|+.|||||+++|+|||+|||||||++|+||||+| +|||+||||+||.|++++|++|+.
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~ 91 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS 91 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hCcHHHHHHHhhcCCCCC------C-hhhHHHHHHHHhhhCccccCCC
Q 011159 87 MGNEKSNSYWEAELPPNY------D-RVGIENFIRAKYEEKRWIPRGG 127 (492)
Q Consensus 87 gGN~~aN~iwEA~lPp~~------D-r~~~e~FIRaKYeeKrF~~~~~ 127 (492)
+||.++|+|||+++|+.. | ...+|+|||+||++++|+..+.
T Consensus 92 ~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 92 HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred hcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999987532 2 3457899999999999997665
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.3e-35 Score=263.32 Aligned_cols=108 Identities=31% Similarity=0.620 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhCcHHHH
Q 011159 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSN 93 (492)
Q Consensus 14 r~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~gGN~~aN 93 (492)
..+++|+.|++.|+|+.|+|||+++|+|+|++||||||++|+|+||.||+|||+||||+||+|++++|++|+.+||.++|
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC---CCChhhHHHHHHHHhhhCc
Q 011159 94 SYWEAELPP---NYDRVGIENFIRAKYEEKR 121 (492)
Q Consensus 94 ~iwEA~lPp---~~Dr~~~e~FIRaKYeeKr 121 (492)
+|||++... ...+.+++.||++||+++.
T Consensus 102 ~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 102 NYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 999984332 2235678999999999873
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=6.6e-34 Score=259.14 Aligned_cols=95 Identities=39% Similarity=0.728 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCC-CCHHHHHHHHhhC
Q 011159 10 ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMG 88 (492)
Q Consensus 10 rl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDt-WT~eEV~~Lk~gG 88 (492)
...++.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.||+|||+||||+||. |++++|++|+.+|
T Consensus 11 ~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~G 90 (149)
T 2crw_A 11 PSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGG 90 (149)
T ss_dssp CCHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHh
Confidence 334678999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred cHHHHHHHhhcCCCCC
Q 011159 89 NEKSNSYWEAELPPNY 104 (492)
Q Consensus 89 N~~aN~iwEA~lPp~~ 104 (492)
|.++|+|||++.....
T Consensus 91 N~~an~~~e~~~~~~~ 106 (149)
T 2crw_A 91 NASASSFFHQHGCSTN 106 (149)
T ss_dssp HHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHhcCCCCc
Confidence 9999999999987643
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=255.81 Aligned_cols=115 Identities=35% Similarity=0.662 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhCc
Q 011159 10 ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGN 89 (492)
Q Consensus 10 rl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~gGN 89 (492)
..+++++++|+.|++.|+|+.|+|||+++|+|+|++||||||++|+||||.||+|||+||||+||.|+++||++|+.+||
T Consensus 20 m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN 99 (147)
T 3dwd_A 20 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99 (147)
T ss_dssp --CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC--CCCC-hhh--------HHHHHHHHhhhCcccc
Q 011159 90 EKSNSYWEAELP--PNYD-RVG--------IENFIRAKYEEKRWIP 124 (492)
Q Consensus 90 ~~aN~iwEA~lP--p~~D-r~~--------~e~FIRaKYeeKrF~~ 124 (492)
.++|+|||++.. +..+ +.+ +++.|+++++.+.|..
T Consensus 100 ~~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 100 AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 999999998742 2222 222 4566677777676653
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.9e-32 Score=248.43 Aligned_cols=108 Identities=36% Similarity=0.712 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCC-CCHHHHHHHHhhCcHH
Q 011159 13 AKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNEK 91 (492)
Q Consensus 13 ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDt-WT~eEV~~Lk~gGN~~ 91 (492)
++.+++|+.|++.|+|+.|+|||+++|+|+|++||||||++|+||||.||+|||+||||+||. |++++|++|+.+||.+
T Consensus 22 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~ 101 (144)
T 2p57_A 22 TEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNAN 101 (144)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHH
Confidence 456889999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHhhcCCCCCC-hhhHHHHHHHHhhhC
Q 011159 92 SNSYWEAELPPNYD-RVGIENFIRAKYEEK 120 (492)
Q Consensus 92 aN~iwEA~lPp~~D-r~~~e~FIRaKYeeK 120 (492)
+|+|||++.....+ +.++......+|+++
T Consensus 102 an~~~e~~g~~~~~~~~KY~s~aA~~Yr~~ 131 (144)
T 2p57_A 102 ATAFFRQHGCTANDANTKYNSRAAQMYREK 131 (144)
T ss_dssp HHHHHHHTTCCCCSHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHcCCCCCchhhccCcHHHHHHHHH
Confidence 99999988543323 334455566666654
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=1.4e-32 Score=253.41 Aligned_cols=113 Identities=37% Similarity=0.624 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhC
Q 011159 10 ELNAKHRKILDGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMG 88 (492)
Q Consensus 10 rl~ar~ekiL~~Llk~-PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~gG 88 (492)
-+++..+++|++|++. |+|+.|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|++++|++|+.+|
T Consensus 3 ~m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~G 82 (163)
T 3sub_A 3 HMNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGG 82 (163)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhC
Confidence 3678889999999985 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhcCCCCCCh-hhHHHHHHHHhhhCcc
Q 011159 89 NEKSNSYWEAELPPNYDR-VGIENFIRAKYEEKRW 122 (492)
Q Consensus 89 N~~aN~iwEA~lPp~~Dr-~~~e~FIRaKYeeKrF 122 (492)
|.++|.|||++....... .++..-..++|+++.-
T Consensus 83 N~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~L~ 117 (163)
T 3sub_A 83 NKKCQTYLENYGISDFIPERKYRTKAADHYRKILR 117 (163)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccChhhcCCCHHHHHHHHHHH
Confidence 999999999987665443 2344456666766533
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.97 E-value=3.2e-31 Score=255.14 Aligned_cols=120 Identities=38% Similarity=0.667 Sum_probs=105.7
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHH
Q 011159 6 NVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQ 85 (492)
Q Consensus 6 ~~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk 85 (492)
..+.+.+++.+++|+.|++.|+|+.|+|||+++|+|+|++||+|||++|+|+||.||+|||+|||++||.|++++|.+|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~ 99 (301)
T 2b0o_E 20 GHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99 (301)
T ss_dssp -------CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcHHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccccC
Q 011159 86 SMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPR 125 (492)
Q Consensus 86 ~gGN~~aN~iwEA~lPp~--------~Dr~~~e~FIRaKYeeKrF~~~ 125 (492)
.+||..+|.+||+.++.. .+...+++||++||++++|...
T Consensus 100 ~~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HcCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999987642 2345789999999999998754
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=2.2e-31 Score=271.03 Aligned_cols=119 Identities=38% Similarity=0.671 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhh
Q 011159 8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87 (492)
Q Consensus 8 SKrl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~g 87 (492)
+..+++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++|||+||.||+||||||||+||.|+++++++|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~ 82 (497)
T 3lvq_E 3 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 82 (497)
T ss_dssp -----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTC
T ss_pred cchhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccccCC
Q 011159 88 GNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRG 126 (492)
Q Consensus 88 GN~~aN~iwEA~lPp~--------~Dr~~~e~FIRaKYeeKrF~~~~ 126 (492)
||..+|.+||+.+|.. .+...+++||++||++++|..+.
T Consensus 83 GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 83 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp CHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hhHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 9999999999988642 23456899999999999998754
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=1.1e-30 Score=248.36 Aligned_cols=114 Identities=37% Similarity=0.712 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhCcHHH
Q 011159 13 AKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKS 92 (492)
Q Consensus 13 ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~gGN~~a 92 (492)
++++++|+.|++.|+|+.|+|||+.+|.|+|++||+|||++|+|+||.||+|||+|||++||.|+.+++.+|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChhhHHHHHHHHhhhCccccCC
Q 011159 93 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRG 126 (492)
Q Consensus 93 N~iwEA~lPp~--------~Dr~~~e~FIRaKYeeKrF~~~~ 126 (492)
|+|||+.+|.. .+...+++||++||+.++|....
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999987632 24557899999999999997653
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.2e-29 Score=244.08 Aligned_cols=93 Identities=39% Similarity=0.727 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhC
Q 011159 9 KELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMG 88 (492)
Q Consensus 9 Krl~ar~ekiL~~Llk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~gG 88 (492)
|..+.+++++|+.|++.|+|+.|+|||+++|.|||++||||||++|+|+||.||+|||+||||+||.|++++|++|+.+|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~g 97 (329)
T 3o47_A 18 GMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGG 97 (329)
T ss_dssp -----CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhcCC
Q 011159 89 NEKSNSYWEAELP 101 (492)
Q Consensus 89 N~~aN~iwEA~lP 101 (492)
|.++|++||+...
T Consensus 98 N~~~n~~~e~~~~ 110 (329)
T 3o47_A 98 NAKFREFLESQED 110 (329)
T ss_dssp HHHHHHHHHTCSS
T ss_pred cHHHHHHHHhcCC
Confidence 9999999998753
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=87.84 E-value=0.48 Score=44.54 Aligned_cols=77 Identities=18% Similarity=0.430 Sum_probs=48.8
Q ss_pred CCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhCcHHHHHHHhhcCCCCC
Q 011159 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY 104 (492)
Q Consensus 25 ~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRsLGvHISkVKSLsMDtWT~eEV~~Lk~gGN~~aN~iwEA~lPp~~ 104 (492)
.|.=..|+.||.+...|.+...|.|+|..|...+ .++.+++..|+..-......+..-.+++ .
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~~~~~~~~-~ 209 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRASFEQPVPS-A 209 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHHHHSCCCG-G
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHHhhCCCCH-H
Confidence 4666799999998777889999999999995321 3578888888665444333333333322 2
Q ss_pred ChhhHHHHHHHHhh
Q 011159 105 DRVGIENFIRAKYE 118 (492)
Q Consensus 105 Dr~~~e~FIRaKYe 118 (492)
.....+++++.-|.
T Consensus 210 ~~~~~~~ll~~~~~ 223 (244)
T 1u5k_A 210 DRPALWRALEKFVT 223 (244)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23344555555444
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=66.05 E-value=3.1 Score=31.14 Aligned_cols=38 Identities=34% Similarity=0.790 Sum_probs=31.9
Q ss_pred CCCCCCcCCCCC-CCCeeEcccchHhhHhhhhhhhcCCC
Q 011159 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (492)
Q Consensus 26 PgNk~CADCGA~-nP~WaSvnfGVFLC~~CSGIHRsLGv 63 (492)
...+.|.+|+.. -|.|=.-..|..||-.|.-.++..|+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356899999986 57899888999999999888877664
No 17
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=58.83 E-value=7.9 Score=35.07 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCCCCCCcCCCCCCCC-eeEcccchHhhHhhhhhhh
Q 011159 25 LPENRECADCKAKGPR-WASVNLGIFICMQCSGIHR 59 (492)
Q Consensus 25 ~PgNk~CADCGA~nP~-WaSvnfGVFLC~~CSGIHR 59 (492)
...-.+|.+||.+=|. -.-.--++-+|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 3566799999998331 1122336778999998764
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=55.36 E-value=5.4 Score=31.67 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=32.4
Q ss_pred CCCCCCCcCCCCC-CCCeeEcccchHhhHhhhhhhhcCCC
Q 011159 25 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (492)
Q Consensus 25 ~PgNk~CADCGA~-nP~WaSvnfGVFLC~~CSGIHRsLGv 63 (492)
......|++|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 3567899999986 57999888999999999887777664
No 19
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=55.27 E-value=5.8 Score=29.23 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.3
Q ss_pred CCCcCCCCC-CCCeeEcccchHhhHhhhhhhhcCCC
Q 011159 29 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (492)
Q Consensus 29 k~CADCGA~-nP~WaSvnfGVFLC~~CSGIHRsLGv 63 (492)
+.|++|+.. -|.|=.-..|-.||-.|.-..|..|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999986 57899999999999999887776553
No 20
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=52.50 E-value=6.8 Score=31.29 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=31.9
Q ss_pred CCCCCCcCCCCC-CCCeeEcccchHhhHhhhhhhhcCCC
Q 011159 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (492)
Q Consensus 26 PgNk~CADCGA~-nP~WaSvnfGVFLC~~CSGIHRsLGv 63 (492)
.+...|++|+.. -|.|-.-..|-.||-.|.-..+..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999986 68999988999999999887776654
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=50.08 E-value=6.4 Score=34.22 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.5
Q ss_pred CCCCcCCCCC-CCCeeEcccchHhhHhhhhhhhcCCC
Q 011159 28 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (492)
Q Consensus 28 Nk~CADCGA~-nP~WaSvnfGVFLC~~CSGIHRsLGv 63 (492)
-+.|++||+. -|.|=.-..|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4689999986 68999888999999999877765554
No 22
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=43.04 E-value=3.8 Score=35.67 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=22.3
Q ss_pred CCCCCcCCCCCCCC-eeEcccchHhhHhhhhhhh
Q 011159 27 ENRECADCKAKGPR-WASVNLGIFICMQCSGIHR 59 (492)
Q Consensus 27 gNk~CADCGA~nP~-WaSvnfGVFLC~~CSGIHR 59 (492)
.-.+|.+||.+=|. -.-.--++-+|+.|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 35799999998331 1122336778999998764
No 23
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=36.91 E-value=8.7 Score=31.14 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=28.5
Q ss_pred CCCCCcCCCCC-CCCeeE--cccchHhhHhhhhhhhcCCC
Q 011159 27 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 63 (492)
Q Consensus 27 gNk~CADCGA~-nP~WaS--vnfGVFLC~~CSGIHRsLGv 63 (492)
....|++|+.. -|.|=. -.-| .||-.|.-.++..++
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45799999986 588987 6777 899999888777654
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=34.59 E-value=6.6 Score=34.25 Aligned_cols=32 Identities=13% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCCC-eeEcccchHhhHhhhhhh
Q 011159 27 ENRECADCKAKGPR-WASVNLGIFICMQCSGIH 58 (492)
Q Consensus 27 gNk~CADCGA~nP~-WaSvnfGVFLC~~CSGIH 58 (492)
+.-.|.+||...-. |..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 45679999987433 335699999999998653
No 25
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=32.14 E-value=22 Score=29.00 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=30.7
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEcccchHhhHhhhh
Q 011159 15 HRKILDGL-LKLPENRECADCKAKGPRWASVNLGIFICMQCSG 56 (492)
Q Consensus 15 ~ekiL~~L-lk~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSG 56 (492)
.++.+.++ ..+.....|.-||.....+.. .||..|..|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 34555555 567888999999988777765 59999999943
No 26
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=29.17 E-value=17 Score=30.07 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.6
Q ss_pred CCCCCcCCCCCCCCeeEcccchHhhHhhhhhhh
Q 011159 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (492)
Q Consensus 27 gNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHR 59 (492)
|+..|.=||.... ...||++.|..|.+.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999998764 35899999999999776
No 27
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=32.67 E-value=14 Score=30.20 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=15.1
Q ss_pred cccchhhhh---hhhhhhcccC
Q 011159 331 EKSQKDVKN---DVMNLFGKSE 349 (492)
Q Consensus 331 ~~~q~~~kn---dim~lfeks~ 349 (492)
-+++..|+| ++|+||+||-
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 567777776 7899999984
No 28
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=25.65 E-value=19 Score=31.65 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhhCcHHHHHHHhhcC
Q 011159 75 TWLPEQVAVIQSMGNEKSNSYWEAEL 100 (492)
Q Consensus 75 tWT~eEV~~Lk~gGN~~aN~iwEA~l 100 (492)
.|+++|+++|+..++..+-.+-.+.+
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999998888776654
No 29
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=25.16 E-value=29 Score=35.43 Aligned_cols=31 Identities=29% Similarity=0.648 Sum_probs=25.1
Q ss_pred CCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhh
Q 011159 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (492)
Q Consensus 26 PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHR 59 (492)
..+..|.=||.+.-. ..||++.|..|.+..|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 346789999988764 4899999999999876
No 30
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=23.74 E-value=29 Score=29.48 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=23.9
Q ss_pred CCCcCCCCCCCCeeEcccchHhhHhhhhhhhc
Q 011159 29 RECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (492)
Q Consensus 29 k~CADCGA~nP~WaSvnfGVFLC~~CSGIHRs 60 (492)
..|.=||.+.. ...||++.|..|.+..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 56899997754 458999999999998873
No 31
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.24 E-value=30 Score=30.69 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=24.2
Q ss_pred CCCCCCcCCCCCC-----CCeeEcccchHhhHhhhhhh
Q 011159 26 PENRECADCKAKG-----PRWASVNLGIFICMQCSGIH 58 (492)
Q Consensus 26 PgNk~CADCGA~n-----P~WaSvnfGVFLC~~CSGIH 58 (492)
.+...|+-|+.+- ..-.+..-...||.+|.+.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 5778999999763 34456667778888887765
No 32
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=22.83 E-value=43 Score=29.01 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=32.1
Q ss_pred CCCCCCcCCCCC-CCCeeEcccchHhhHhhhhhhhcCCC
Q 011159 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (492)
Q Consensus 26 PgNk~CADCGA~-nP~WaSvnfGVFLC~~CSGIHRsLGv 63 (492)
.....|++|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 456899999986 68999999999999999887776664
No 33
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.26 E-value=41 Score=28.38 Aligned_cols=28 Identities=21% Similarity=0.492 Sum_probs=19.5
Q ss_pred CCCCcCCCCC-------CCC----------eeEcccchHhhHhhhh
Q 011159 28 NRECADCKAK-------GPR----------WASVNLGIFICMQCSG 56 (492)
Q Consensus 28 Nk~CADCGA~-------nP~----------WaSvnfGVFLC~~CSG 56 (492)
--.|.|||.+ -|. -++=.|| .+|..|..
T Consensus 33 ~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 33 IAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 3369999976 111 3455799 99999954
No 34
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=22.00 E-value=36 Score=28.23 Aligned_cols=32 Identities=25% Similarity=0.624 Sum_probs=26.2
Q ss_pred CCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhc
Q 011159 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (492)
Q Consensus 26 PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRs 60 (492)
+.+..|.=||.+.. ...||++.|..|.+..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999998765 358999999999998873
No 35
>2nnu_B HUNK1 protein, bromodomain-containing protein 4; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Homo sapiens}
Probab=21.22 E-value=27 Score=23.53 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=10.5
Q ss_pred hhhhhhhhhhccc
Q 011159 336 DVKNDVMNLFGKS 348 (492)
Q Consensus 336 ~~kndim~lfeks 348 (492)
+..-|||..||.+
T Consensus 8 n~QSDlMa~FEen 20 (26)
T 2nnu_B 8 NFQSDLLSIFEEN 20 (26)
T ss_pred hhHHHHHHHHHHH
Confidence 5678999999853
No 36
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=20.50 E-value=42 Score=27.53 Aligned_cols=31 Identities=26% Similarity=0.687 Sum_probs=25.7
Q ss_pred CCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhc
Q 011159 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (492)
Q Consensus 27 gNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRs 60 (492)
+...|.=||.+.. ...||++.|..|.+..|-
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 4578999998754 569999999999998873
No 37
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=20.44 E-value=35 Score=29.68 Aligned_cols=31 Identities=19% Similarity=0.591 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhc
Q 011159 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (492)
Q Consensus 27 gNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRs 60 (492)
....|.=||.... ...||++.|..|.+..|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 4578999998754 569999999999998873
No 38
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.22 E-value=30 Score=26.48 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=20.5
Q ss_pred CCCcCCCCCCCCeeEcccchHhhHhhhhh
Q 011159 29 RECADCKAKGPRWASVNLGIFICMQCSGI 57 (492)
Q Consensus 29 k~CADCGA~nP~WaSvnfGVFLC~~CSGI 57 (492)
..|-+|+..... ....-|..+|..|.-+
T Consensus 12 ~~Cp~C~~~~lv-~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILV-EDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCE-ECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCcee-EeCCCCeEEeCCCCCE
Confidence 479999986632 2446799999999554
No 39
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=20.04 E-value=34 Score=29.27 Aligned_cols=33 Identities=18% Similarity=0.605 Sum_probs=25.8
Q ss_pred CCCCCCCcCCCCCCCCeeEcccchHhhHhhhhhhhc
Q 011159 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (492)
Q Consensus 25 ~PgNk~CADCGA~nP~WaSvnfGVFLC~~CSGIHRs 60 (492)
.+....|.=||.+.. ...||++.|..|.+..|-
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEAS---GAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBEE---EEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCC---ceEeCCcchhhhhhhhce
Confidence 355778999997643 568999999999998873
Done!