Query 011160
Match_columns 492
No_of_seqs 720 out of 3039
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 08:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.5E-60 1.8E-64 387.6 29.7 321 3-413 120-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.8E-54 3.8E-59 356.3 26.6 316 52-447 106-464 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-51 3.2E-56 343.4 22.6 288 56-414 170-459 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.4E-50 1.2E-54 334.0 20.7 275 3-371 180-458 (459)
5 KOG0286 G-protein beta subunit 100.0 1.2E-46 2.5E-51 299.5 31.9 297 48-413 42-343 (343)
6 KOG0315 G-protein beta subunit 100.0 1.1E-45 2.5E-50 287.2 30.1 282 74-421 11-294 (311)
7 KOG0319 WD40-repeat-containing 100.0 2.2E-46 4.9E-51 333.6 26.0 355 5-443 112-598 (775)
8 KOG0318 WD40 repeat stress pro 100.0 3.1E-43 6.7E-48 301.7 36.5 364 4-420 65-565 (603)
9 KOG0315 G-protein beta subunit 100.0 1.8E-43 3.9E-48 274.9 30.3 296 11-394 11-309 (311)
10 KOG0265 U5 snRNP-specific prot 100.0 5.1E-43 1.1E-47 279.9 26.8 295 53-413 39-336 (338)
11 KOG0279 G protein beta subunit 100.0 4.3E-42 9.4E-47 271.8 30.8 292 51-415 5-313 (315)
12 KOG0279 G protein beta subunit 100.0 1.4E-41 3E-46 268.9 30.8 287 8-373 26-313 (315)
13 KOG0306 WD40-repeat-containing 100.0 9.6E-43 2.1E-47 311.0 27.1 403 5-465 72-675 (888)
14 KOG0318 WD40 repeat stress pro 100.0 6.3E-41 1.4E-45 287.6 35.0 333 2-415 194-602 (603)
15 KOG0296 Angio-associated migra 100.0 2.2E-41 4.8E-46 277.6 30.6 324 5-415 71-398 (399)
16 KOG0282 mRNA splicing factor [ 100.0 4.8E-43 1E-47 297.7 20.1 295 52-413 205-503 (503)
17 KOG0286 G-protein beta subunit 100.0 2.4E-41 5.1E-46 269.3 28.2 278 3-371 60-343 (343)
18 KOG0319 WD40-repeat-containing 100.0 1.6E-41 3.4E-46 302.8 26.2 346 10-417 250-621 (775)
19 KOG0285 Pleiotropic regulator 100.0 2.3E-41 4.9E-46 276.7 24.9 294 49-416 139-440 (460)
20 KOG0291 WD40-repeat-containing 100.0 6.8E-40 1.5E-44 293.0 36.5 324 4-420 271-617 (893)
21 KOG0295 WD40 repeat-containing 100.0 1.4E-41 3.1E-46 278.6 23.5 298 44-414 91-405 (406)
22 KOG0273 Beta-transducin family 100.0 2.3E-40 5E-45 280.4 31.0 322 5-415 185-523 (524)
23 KOG0293 WD40 repeat-containing 100.0 3.6E-41 7.8E-46 280.6 25.2 298 50-417 213-515 (519)
24 KOG0284 Polyadenylation factor 100.0 3E-42 6.4E-47 286.6 17.2 280 2-416 100-381 (464)
25 KOG0645 WD40 repeat protein [G 100.0 5.1E-39 1.1E-43 253.3 30.7 294 51-415 4-311 (312)
26 KOG0316 Conserved WD40 repeat- 100.0 4.1E-39 9E-44 248.7 27.4 285 54-414 10-298 (307)
27 KOG0291 WD40-repeat-containing 100.0 1.9E-38 4E-43 283.8 34.9 344 4-420 195-555 (893)
28 KOG0295 WD40 repeat-containing 100.0 4.8E-40 1E-44 269.6 21.7 277 4-372 114-405 (406)
29 KOG0273 Beta-transducin family 100.0 1.3E-38 2.9E-43 269.8 28.1 274 4-373 241-523 (524)
30 KOG1334 WD40 repeat protein [G 100.0 4.2E-40 9.1E-45 280.1 18.7 382 36-449 117-504 (559)
31 KOG0263 Transcription initiati 100.0 1.2E-39 2.7E-44 293.7 21.7 280 56-419 373-653 (707)
32 PLN00181 protein SPA1-RELATED; 100.0 1.4E-37 3E-42 310.8 38.3 293 56-414 478-792 (793)
33 KOG0266 WD40 repeat-containing 100.0 5.8E-38 1.3E-42 291.2 32.8 296 52-415 149-454 (456)
34 cd00200 WD40 WD40 domain, foun 100.0 1.6E-37 3.4E-42 277.1 34.5 286 55-413 3-289 (289)
35 KOG0285 Pleiotropic regulator 100.0 1.5E-38 3.3E-43 260.2 24.0 285 2-373 155-439 (460)
36 KOG0263 Transcription initiati 100.0 1.3E-38 2.8E-43 287.1 25.7 258 3-292 383-651 (707)
37 KOG0278 Serine/threonine kinas 100.0 8.8E-39 1.9E-43 249.1 17.4 290 55-420 8-302 (334)
38 KOG0281 Beta-TrCP (transducin 100.0 9.8E-39 2.1E-43 260.5 18.1 277 60-420 196-482 (499)
39 KOG0275 Conserved WD40 repeat- 100.0 8.5E-39 1.8E-43 258.7 17.2 292 2-414 217-508 (508)
40 KOG0645 WD40 repeat protein [G 100.0 1.9E-36 4.2E-41 238.9 30.0 282 4-373 20-311 (312)
41 KOG0276 Vesicle coat complex C 100.0 1.7E-37 3.8E-42 271.9 25.0 287 52-410 4-294 (794)
42 KOG0306 WD40-repeat-containing 100.0 1.2E-36 2.6E-41 272.2 30.6 378 10-427 34-593 (888)
43 KOG0292 Vesicle coat complex C 100.0 3E-37 6.5E-42 280.8 25.7 306 56-418 4-324 (1202)
44 KOG0276 Vesicle coat complex C 100.0 1.4E-35 3E-40 260.0 32.8 263 2-293 17-301 (794)
45 KOG0266 WD40 repeat-containing 100.0 2.8E-36 6.1E-41 280.0 30.2 279 4-373 165-454 (456)
46 KOG1446 Histone H3 (Lys4) meth 100.0 6.1E-35 1.3E-39 236.1 32.3 299 51-419 4-307 (311)
47 KOG0281 Beta-TrCP (transducin 100.0 1.2E-37 2.5E-42 254.3 16.1 274 9-377 206-481 (499)
48 KOG0284 Polyadenylation factor 100.0 2.5E-37 5.4E-42 257.4 16.7 245 61-419 96-341 (464)
49 KOG0282 mRNA splicing factor [ 100.0 1.2E-36 2.6E-41 258.9 20.0 275 6-371 223-503 (503)
50 KOG0313 Microtubule binding pr 100.0 1.3E-35 2.8E-40 245.0 25.5 273 10-415 115-418 (423)
51 KOG0296 Angio-associated migra 100.0 5.5E-36 1.2E-40 246.0 22.9 304 54-421 57-362 (399)
52 KOG0265 U5 snRNP-specific prot 100.0 1E-35 2.2E-40 238.2 23.5 280 4-371 53-336 (338)
53 KOG1407 WD40 repeat protein [F 100.0 1.5E-34 3.2E-39 227.0 27.2 287 55-415 14-311 (313)
54 KOG0292 Vesicle coat complex C 100.0 8E-35 1.7E-39 265.1 29.8 249 2-293 13-283 (1202)
55 cd00200 WD40 WD40 domain, foun 100.0 2.4E-34 5.1E-39 256.6 32.3 275 3-371 14-289 (289)
56 KOG0293 WD40 repeat-containing 100.0 2.6E-35 5.7E-40 245.7 22.7 279 4-374 230-514 (519)
57 KOG0643 Translation initiation 100.0 4.5E-35 9.8E-40 230.6 21.7 287 56-416 5-318 (327)
58 KOG0316 Conserved WD40 repeat- 100.0 1.3E-34 2.8E-39 223.9 23.0 273 3-371 22-297 (307)
59 KOG0772 Uncharacterized conser 100.0 3.9E-34 8.5E-39 245.4 25.5 306 52-415 158-488 (641)
60 KOG0278 Serine/threonine kinas 100.0 1.6E-35 3.5E-40 230.9 14.4 275 7-378 26-302 (334)
61 KOG0288 WD40 repeat protein Ti 100.0 2.7E-35 5.8E-40 245.8 15.8 286 53-413 167-459 (459)
62 KOG0310 Conserved WD40 repeat- 100.0 1.6E-33 3.5E-38 240.3 25.3 288 61-420 26-314 (487)
63 KOG0283 WD40 repeat-containing 100.0 5.3E-34 1.2E-38 259.6 23.7 259 52-375 257-578 (712)
64 KOG0640 mRNA cleavage stimulat 100.0 5.9E-34 1.3E-38 229.2 21.0 296 55-414 106-425 (430)
65 KOG0268 Sof1-like rRNA process 100.0 8.3E-35 1.8E-39 238.8 16.0 291 52-420 57-350 (433)
66 PLN00181 protein SPA1-RELATED; 100.0 1.2E-32 2.6E-37 275.5 34.0 302 3-372 488-792 (793)
67 KOG0643 Translation initiation 100.0 3.2E-33 6.9E-38 220.3 23.4 288 4-373 16-317 (327)
68 KOG0277 Peroxisomal targeting 100.0 3.2E-33 6.9E-38 218.7 21.2 283 65-414 12-308 (311)
69 KOG1539 WD repeat protein [Gen 100.0 1.4E-32 2.9E-37 249.2 27.2 372 11-453 173-647 (910)
70 KOG0274 Cdc4 and related F-box 100.0 1.7E-32 3.7E-37 253.2 27.9 271 9-421 217-488 (537)
71 KOG0305 Anaphase promoting com 100.0 6.5E-32 1.4E-36 239.7 27.8 272 9-375 187-463 (484)
72 KOG1407 WD40 repeat protein [F 100.0 1.4E-32 3E-37 216.0 20.4 273 101-452 17-290 (313)
73 KOG0289 mRNA splicing factor [ 100.0 1.2E-31 2.7E-36 225.3 27.0 283 62-414 220-505 (506)
74 KOG0268 Sof1-like rRNA process 100.0 7.7E-33 1.7E-37 227.4 17.8 276 8-381 77-353 (433)
75 KOG0647 mRNA export protein (c 100.0 2.4E-31 5.1E-36 213.5 25.6 279 59-406 25-315 (347)
76 KOG0289 mRNA splicing factor [ 100.0 3.4E-31 7.4E-36 222.7 26.7 276 8-372 229-505 (506)
77 KOG0277 Peroxisomal targeting 100.0 1.2E-31 2.6E-36 209.9 21.6 246 60-372 59-308 (311)
78 PTZ00421 coronin; Provisional 100.0 1.5E-30 3.2E-35 240.4 32.5 273 5-397 27-315 (493)
79 KOG0973 Histone transcription 100.0 2.2E-31 4.9E-36 249.0 27.0 297 60-421 12-361 (942)
80 KOG0640 mRNA cleavage stimulat 100.0 6.7E-32 1.4E-36 217.4 19.7 305 3-372 117-425 (430)
81 KOG0300 WD40 repeat-containing 100.0 1.8E-31 3.9E-36 215.8 21.7 303 43-417 130-478 (481)
82 KOG1539 WD repeat protein [Gen 100.0 2E-30 4.4E-35 235.2 30.8 320 7-416 211-649 (910)
83 KOG0310 Conserved WD40 repeat- 100.0 2.5E-31 5.5E-36 227.0 23.4 279 1-374 29-310 (487)
84 KOG0294 WD40 repeat-containing 100.0 3.3E-30 7.2E-35 208.2 28.4 280 12-375 3-283 (362)
85 KOG0283 WD40 repeat-containing 100.0 9.8E-32 2.1E-36 244.9 21.7 255 101-418 264-579 (712)
86 KOG0305 Anaphase promoting com 100.0 1.1E-30 2.4E-35 231.9 27.6 275 65-417 181-463 (484)
87 KOG1036 Mitotic spindle checkp 100.0 2.5E-30 5.3E-35 208.5 26.9 274 61-405 13-294 (323)
88 KOG0288 WD40 repeat protein Ti 100.0 2.2E-32 4.8E-37 228.4 14.4 278 3-370 180-458 (459)
89 KOG1310 WD40 repeat protein [G 100.0 1.4E-30 3E-35 225.6 24.4 254 43-297 32-310 (758)
90 KOG0299 U3 snoRNP-associated p 100.0 1.2E-30 2.5E-35 221.2 23.1 305 3-370 147-453 (479)
91 KOG0275 Conserved WD40 repeat- 100.0 3.1E-31 6.7E-36 215.0 18.7 253 59-422 211-474 (508)
92 KOG1408 WD40 repeat protein [F 100.0 1.4E-30 2.9E-35 232.5 24.0 336 5-421 331-719 (1080)
93 KOG1063 RNA polymerase II elon 100.0 3.1E-29 6.7E-34 223.0 32.4 355 11-417 207-650 (764)
94 KOG1408 WD40 repeat protein [F 100.0 5.3E-30 1.1E-34 228.7 26.5 250 165-431 394-688 (1080)
95 KOG0294 WD40 repeat-containing 100.0 1.2E-29 2.6E-34 204.9 25.8 241 101-417 40-283 (362)
96 PTZ00420 coronin; Provisional 100.0 4.2E-29 9E-34 231.6 31.7 250 79-397 50-318 (568)
97 KOG0299 U3 snoRNP-associated p 100.0 1.7E-29 3.6E-34 214.3 25.7 299 54-414 135-455 (479)
98 KOG0772 Uncharacterized conser 100.0 3.8E-30 8.2E-35 221.1 22.0 288 5-371 174-485 (641)
99 KOG0641 WD40 repeat protein [G 100.0 9.6E-28 2.1E-32 185.0 32.6 301 50-415 22-349 (350)
100 KOG0647 mRNA export protein (c 100.0 4E-29 8.6E-34 200.8 24.8 276 3-362 32-312 (347)
101 KOG1273 WD40 repeat protein [G 100.0 7E-29 1.5E-33 200.5 26.2 298 64-419 26-326 (405)
102 KOG0641 WD40 repeat protein [G 100.0 4.6E-28 1E-32 186.7 29.4 305 1-373 35-349 (350)
103 KOG0973 Histone transcription 100.0 1.1E-29 2.4E-34 237.7 24.6 296 4-374 19-356 (942)
104 KOG0308 Conserved WD40 repeat- 100.0 4.1E-30 8.9E-35 227.0 20.4 327 7-420 34-398 (735)
105 KOG0301 Phospholipase A2-activ 100.0 5.4E-29 1.2E-33 221.6 27.5 284 51-416 4-289 (745)
106 KOG1332 Vesicle coat complex C 100.0 1.1E-29 2.5E-34 197.7 19.8 249 5-291 18-287 (299)
107 PTZ00420 coronin; Provisional 100.0 3.8E-28 8.3E-33 225.2 31.1 214 54-292 67-295 (568)
108 KOG2096 WD40 repeat protein [G 100.0 2.5E-28 5.5E-33 197.6 25.8 308 54-417 79-404 (420)
109 KOG0313 Microtubule binding pr 100.0 3.3E-29 7.2E-34 207.3 21.0 270 59-419 103-380 (423)
110 PTZ00421 coronin; Provisional 100.0 2.9E-28 6.4E-33 225.2 29.7 253 60-420 19-295 (493)
111 KOG0264 Nucleosome remodeling 100.0 6.5E-29 1.4E-33 210.7 23.0 251 59-416 122-405 (422)
112 KOG0639 Transducin-like enhanc 100.0 2.5E-29 5.5E-34 215.5 20.7 282 59-414 417-703 (705)
113 KOG2048 WD40 repeat protein [G 100.0 2.4E-27 5.3E-32 210.6 33.6 248 3-294 30-279 (691)
114 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-27 4.1E-32 192.8 29.2 281 1-373 17-303 (311)
115 KOG4283 Transcription-coupled 100.0 6.3E-28 1.4E-32 193.2 25.8 308 57-415 39-365 (397)
116 KOG2055 WD40 repeat protein [G 100.0 3.2E-28 7E-33 206.5 24.8 290 61-415 213-512 (514)
117 KOG0321 WD40 repeat-containing 100.0 3.1E-28 6.7E-33 214.8 25.5 310 66-419 54-395 (720)
118 KOG0308 Conserved WD40 repeat- 100.0 4.1E-29 8.8E-34 220.7 19.1 296 60-417 20-329 (735)
119 KOG1274 WD40 repeat protein [G 100.0 2.2E-27 4.8E-32 218.1 31.1 286 58-412 10-297 (933)
120 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 7E-27 1.5E-31 209.7 34.2 293 10-395 1-300 (300)
121 KOG2106 Uncharacterized conser 100.0 2.4E-27 5.2E-32 203.5 27.3 331 4-414 252-625 (626)
122 KOG1332 Vesicle coat complex C 100.0 2.6E-28 5.6E-33 190.2 19.4 259 97-416 4-287 (299)
123 KOG1063 RNA polymerase II elon 100.0 4.9E-27 1.1E-31 209.2 30.2 394 8-448 157-632 (764)
124 KOG2106 Uncharacterized conser 100.0 2.3E-26 4.9E-31 197.6 31.9 311 6-417 208-523 (626)
125 KOG0646 WD40 repeat protein [G 100.0 6.1E-28 1.3E-32 205.3 21.9 334 13-415 10-350 (476)
126 KOG0300 WD40 repeat-containing 100.0 5.2E-28 1.1E-32 195.8 20.5 277 8-375 158-478 (481)
127 KOG0264 Nucleosome remodeling 100.0 6.5E-28 1.4E-32 204.6 21.5 262 7-291 134-405 (422)
128 KOG0650 WD40 repeat nucleolar 100.0 3.7E-27 8.1E-32 206.5 26.6 291 52-413 391-733 (733)
129 KOG2048 WD40 repeat protein [G 100.0 3.5E-26 7.5E-31 203.4 32.0 378 4-419 75-552 (691)
130 KOG2055 WD40 repeat protein [G 100.0 3.1E-27 6.8E-32 200.6 24.1 291 1-373 216-512 (514)
131 KOG1036 Mitotic spindle checkp 100.0 8.5E-27 1.9E-31 188.2 24.5 274 3-363 18-294 (323)
132 KOG0274 Cdc4 and related F-box 100.0 2.2E-27 4.7E-32 219.5 23.7 244 60-425 207-451 (537)
133 KOG0639 Transducin-like enhanc 100.0 1.3E-27 2.9E-32 205.0 19.1 275 6-372 427-703 (705)
134 KOG4227 WD40 repeat protein [G 100.0 2.1E-26 4.6E-31 191.8 25.2 311 53-416 48-388 (609)
135 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.2E-25 4.9E-30 200.0 31.1 278 73-420 1-284 (300)
136 KOG4328 WD40 protein [Function 100.0 5.3E-26 1.2E-30 193.0 24.4 307 52-416 177-496 (498)
137 KOG2096 WD40 repeat protein [G 100.0 1.8E-25 3.9E-30 181.2 25.6 295 3-371 91-400 (420)
138 KOG0269 WD40 repeat-containing 100.0 1E-26 2.2E-31 209.7 20.1 291 62-419 40-344 (839)
139 KOG0269 WD40 repeat-containing 100.0 6.9E-27 1.5E-31 210.8 18.9 288 6-375 47-342 (839)
140 KOG0646 WD40 repeat protein [G 100.0 1E-25 2.3E-30 191.8 24.7 280 78-422 12-314 (476)
141 KOG0321 WD40 repeat-containing 99.9 9E-26 2E-30 199.3 24.6 297 8-375 62-393 (720)
142 KOG1273 WD40 repeat protein [G 99.9 8.4E-26 1.8E-30 182.8 22.1 287 3-372 28-321 (405)
143 KOG0301 Phospholipase A2-activ 99.9 1.6E-26 3.5E-31 206.0 19.5 241 99-416 9-250 (745)
144 KOG2445 Nuclear pore complex c 99.9 7.7E-25 1.7E-29 176.7 25.5 273 97-416 6-319 (361)
145 KOG4283 Transcription-coupled 99.9 4.8E-25 1E-29 176.9 23.8 300 8-372 54-364 (397)
146 KOG2919 Guanine nucleotide-bin 99.9 3.6E-25 7.7E-30 179.9 23.3 286 63-406 51-361 (406)
147 KOG1274 WD40 repeat protein [G 99.9 8.2E-25 1.8E-29 201.4 27.2 243 4-291 19-263 (933)
148 KOG1445 Tumor-specific antigen 99.9 1E-24 2.2E-29 192.7 26.7 198 7-234 89-293 (1012)
149 KOG0267 Microtubule severing p 99.9 4.3E-27 9.4E-32 210.5 11.3 236 57-406 24-259 (825)
150 KOG1034 Transcriptional repres 99.9 3.3E-25 7.2E-30 180.4 20.3 319 58-415 35-383 (385)
151 KOG0267 Microtubule severing p 99.9 1.2E-26 2.6E-31 207.7 10.5 223 10-285 40-262 (825)
152 KOG1188 WD40 repeat protein [G 99.9 8E-25 1.7E-29 179.2 19.6 290 11-372 41-345 (376)
153 KOG4378 Nuclear protein COP1 [ 99.9 2.8E-24 6E-29 184.5 22.7 293 12-397 5-305 (673)
154 KOG1538 Uncharacterized conser 99.9 9.1E-24 2E-28 187.9 26.6 273 1-372 15-292 (1081)
155 KOG0307 Vesicle coat complex C 99.9 1.3E-25 2.7E-30 211.8 15.8 290 65-418 10-330 (1049)
156 KOG2445 Nuclear pore complex c 99.9 2.2E-23 4.8E-28 168.4 26.0 293 58-383 10-331 (361)
157 KOG1009 Chromatin assembly com 99.9 7.9E-24 1.7E-28 177.3 23.4 314 10-420 26-377 (434)
158 KOG0302 Ribosome Assembly prot 99.9 1.9E-24 4E-29 179.3 19.2 262 8-288 163-436 (440)
159 KOG0302 Ribosome Assembly prot 99.9 3.4E-24 7.4E-29 177.7 20.6 269 55-370 145-435 (440)
160 KOG0270 WD40 repeat-containing 99.9 2.5E-24 5.4E-29 182.3 19.3 254 8-292 190-451 (463)
161 KOG0322 G-protein beta subunit 99.9 4.3E-24 9.3E-29 168.7 18.9 302 54-414 7-322 (323)
162 KOG4328 WD40 protein [Function 99.9 9E-24 2E-28 179.6 21.1 297 5-374 193-496 (498)
163 KOG4378 Nuclear protein COP1 [ 99.9 4.4E-24 9.5E-29 183.3 19.3 253 13-354 50-304 (673)
164 KOG1188 WD40 repeat protein [G 99.9 3E-23 6.5E-28 170.0 20.3 290 74-415 41-346 (376)
165 KOG1034 Transcriptional repres 99.9 1.1E-22 2.4E-27 165.9 20.9 271 59-373 87-383 (385)
166 KOG1538 Uncharacterized conser 99.9 1.2E-22 2.6E-27 180.9 22.4 279 63-420 14-298 (1081)
167 KOG0270 WD40 repeat-containing 99.9 1.2E-22 2.6E-27 172.3 19.5 287 66-419 130-453 (463)
168 KOG1963 WD40 repeat protein [G 99.9 4.9E-21 1.1E-25 176.3 31.1 369 4-416 22-539 (792)
169 KOG0642 Cell-cycle nuclear pro 99.9 2.8E-23 6.1E-28 181.3 14.3 306 11-420 243-566 (577)
170 KOG2919 Guanine nucleotide-bin 99.9 4.8E-21 1E-25 156.1 23.1 286 2-364 53-361 (406)
171 KOG0307 Vesicle coat complex C 99.9 6.2E-23 1.3E-27 193.8 14.1 251 61-376 64-330 (1049)
172 KOG1445 Tumor-specific antigen 99.9 3.4E-21 7.4E-26 170.7 23.7 167 203-418 627-801 (1012)
173 KOG4227 WD40 repeat protein [G 99.9 4.7E-21 1E-25 160.2 22.0 321 2-372 60-386 (609)
174 KOG0650 WD40 repeat nucleolar 99.9 2.2E-21 4.9E-26 170.6 20.8 253 99-413 395-678 (733)
175 COG2319 FOG: WD40 repeat [Gene 99.9 6.9E-19 1.5E-23 167.0 38.1 316 7-416 119-443 (466)
176 COG2319 FOG: WD40 repeat [Gene 99.9 5E-19 1.1E-23 168.0 36.1 324 4-422 71-407 (466)
177 KOG0644 Uncharacterized conser 99.9 1.8E-22 3.9E-27 184.0 11.6 292 48-418 177-471 (1113)
178 KOG0642 Cell-cycle nuclear pro 99.9 1.5E-21 3.4E-26 170.6 16.3 266 3-385 299-573 (577)
179 KOG1517 Guanine nucleotide bin 99.9 4.4E-20 9.6E-25 172.9 24.6 298 61-419 1064-1385(1387)
180 PRK11028 6-phosphogluconolacto 99.9 1.2E-18 2.6E-23 157.4 32.2 288 12-373 4-304 (330)
181 PRK11028 6-phosphogluconolacto 99.9 6.8E-19 1.5E-23 159.0 30.5 281 77-415 6-304 (330)
182 KOG0290 Conserved WD40 repeat- 99.9 1.6E-19 3.4E-24 145.1 22.0 291 54-411 38-361 (364)
183 KOG1007 WD repeat protein TSSC 99.9 1.9E-19 4.1E-24 144.6 22.0 280 55-373 57-361 (370)
184 KOG1587 Cytoplasmic dynein int 99.9 3.6E-19 7.9E-24 163.8 26.7 286 83-417 222-518 (555)
185 KOG0290 Conserved WD40 repeat- 99.9 2.2E-19 4.7E-24 144.3 21.2 210 59-292 94-320 (364)
186 KOG1963 WD40 repeat protein [G 99.9 4.5E-19 9.8E-24 163.5 25.2 350 4-420 211-588 (792)
187 KOG2110 Uncharacterized conser 99.9 7.5E-18 1.6E-22 140.3 29.7 281 61-416 5-331 (391)
188 KOG1007 WD repeat protein TSSC 99.8 7.7E-19 1.7E-23 141.1 22.5 272 82-416 39-362 (370)
189 KOG1587 Cytoplasmic dynein int 99.8 1E-18 2.2E-23 160.9 26.5 257 60-374 241-517 (555)
190 KOG0649 WD40 repeat protein [G 99.8 2.7E-18 5.9E-23 134.6 24.5 281 62-412 11-313 (325)
191 KOG1240 Protein kinase contain 99.8 6.3E-19 1.4E-23 167.8 24.6 315 50-413 1037-1431(1431)
192 KOG0303 Actin-binding protein 99.8 9.6E-20 2.1E-24 152.5 16.8 209 56-292 76-296 (472)
193 KOG4497 Uncharacterized conser 99.8 5.3E-18 1.2E-22 138.9 25.8 320 4-408 14-425 (447)
194 KOG1523 Actin-related protein 99.8 3.3E-18 7.1E-23 139.6 24.3 222 60-292 9-238 (361)
195 KOG1517 Guanine nucleotide bin 99.8 9.3E-19 2E-23 164.2 24.0 297 4-376 1070-1384(1387)
196 KOG0303 Actin-binding protein 99.8 2.5E-19 5.5E-24 150.0 18.2 211 100-376 77-297 (472)
197 PF02239 Cytochrom_D1: Cytochr 99.8 5.8E-18 1.2E-22 151.9 28.4 323 10-420 5-352 (369)
198 KOG0649 WD40 repeat protein [G 99.8 5E-18 1.1E-22 133.1 23.8 246 5-291 17-275 (325)
199 KOG0644 Uncharacterized conser 99.8 2.2E-20 4.7E-25 170.7 12.3 272 4-377 196-472 (1113)
200 KOG2110 Uncharacterized conser 99.8 2.3E-17 5E-22 137.4 26.9 239 104-418 5-251 (391)
201 KOG1240 Protein kinase contain 99.8 1.2E-17 2.5E-22 159.4 27.4 343 2-371 1053-1431(1431)
202 KOG1009 Chromatin assembly com 99.8 5.2E-19 1.1E-23 148.7 15.6 163 61-237 13-198 (434)
203 KOG0322 G-protein beta subunit 99.8 1.5E-18 3.4E-23 137.6 17.1 288 5-372 21-322 (323)
204 PRK01742 tolB translocation pr 99.8 2.6E-18 5.7E-23 159.8 21.1 237 82-396 183-426 (429)
205 KOG2321 WD40 repeat protein [G 99.8 1.5E-17 3.3E-22 146.1 22.7 328 20-414 7-342 (703)
206 KOG0771 Prolactin regulatory e 99.8 9.8E-19 2.1E-23 148.1 14.3 199 3-236 149-356 (398)
207 KOG1523 Actin-related protein 99.8 5.1E-17 1.1E-21 132.7 22.9 265 103-414 9-277 (361)
208 KOG1334 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 145.5 17.1 306 2-376 146-469 (559)
209 KOG4497 Uncharacterized conser 99.8 4.5E-17 9.8E-22 133.5 20.8 332 66-424 13-400 (447)
210 KOG3881 Uncharacterized conser 99.8 2.3E-17 5E-22 138.4 19.3 259 60-420 54-325 (412)
211 KOG1524 WD40 repeat-containing 99.8 2.4E-17 5.2E-22 143.8 19.9 208 74-370 76-283 (737)
212 KOG1524 WD40 repeat-containing 99.8 1.4E-17 3.1E-22 145.1 16.8 203 11-283 76-279 (737)
213 KOG1272 WD40-repeat-containing 99.8 4.1E-18 8.9E-23 145.8 11.9 271 5-370 136-406 (545)
214 KOG0771 Prolactin regulatory e 99.8 1.5E-17 3.4E-22 140.9 15.2 203 65-291 148-355 (398)
215 PRK01742 tolB translocation pr 99.8 8E-17 1.7E-21 149.9 20.8 211 19-289 183-400 (429)
216 KOG2139 WD40 repeat protein [G 99.8 1.3E-15 2.7E-20 126.8 24.7 307 61-416 98-432 (445)
217 KOG2315 Predicted translation 99.8 1.5E-15 3.3E-20 133.6 26.6 316 3-418 39-393 (566)
218 KOG1354 Serine/threonine prote 99.8 1.8E-16 4E-21 130.8 19.6 271 61-375 25-361 (433)
219 KOG2139 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 125.9 23.7 237 6-282 106-366 (445)
220 KOG2111 Uncharacterized conser 99.7 8.5E-15 1.8E-19 119.9 27.0 277 64-414 8-321 (346)
221 PRK03629 tolB translocation pr 99.7 3.6E-15 7.7E-20 138.5 25.7 235 83-396 179-428 (429)
222 PRK04922 tolB translocation pr 99.7 1.1E-15 2.5E-20 142.5 22.4 234 83-395 184-432 (433)
223 KOG2394 WD40 protein DMR-N9 [G 99.7 1E-15 2.2E-20 133.8 20.2 254 117-421 134-458 (636)
224 KOG1272 WD40-repeat-containing 99.7 9E-17 1.9E-21 137.8 13.4 274 64-417 132-411 (545)
225 KOG2111 Uncharacterized conser 99.7 1.2E-14 2.6E-19 119.1 24.0 241 106-418 7-259 (346)
226 KOG1310 WD40 repeat protein [G 99.7 1.1E-15 2.3E-20 134.0 18.9 242 101-379 47-309 (758)
227 KOG1409 Uncharacterized conser 99.7 2.4E-15 5.3E-20 124.3 18.2 253 50-372 13-269 (404)
228 PRK02889 tolB translocation pr 99.7 3.3E-14 7E-19 132.3 24.1 235 83-396 176-425 (427)
229 PF02239 Cytochrom_D1: Cytochr 99.7 8.4E-14 1.8E-18 125.2 25.8 292 76-419 9-306 (369)
230 PRK03629 tolB translocation pr 99.7 6.4E-14 1.4E-18 130.1 25.9 222 129-424 180-415 (429)
231 PRK05137 tolB translocation pr 99.7 6.3E-14 1.4E-18 131.1 25.7 234 83-396 182-433 (435)
232 KOG2394 WD40 protein DMR-N9 [G 99.7 3E-15 6.5E-20 130.9 14.9 198 216-444 185-384 (636)
233 PRK04922 tolB translocation pr 99.7 3.1E-14 6.7E-19 133.0 22.7 201 55-291 197-412 (433)
234 PF10282 Lactonase: Lactonase, 99.6 4.1E-12 8.9E-17 114.8 35.0 298 20-393 13-345 (345)
235 PRK05137 tolB translocation pr 99.6 1.6E-13 3.4E-18 128.4 25.3 202 55-292 195-414 (435)
236 COG5354 Uncharacterized protei 99.6 1.3E-12 2.8E-17 114.1 27.4 314 3-419 37-399 (561)
237 PRK02889 tolB translocation pr 99.6 1.5E-13 3.2E-18 128.0 23.6 202 55-290 189-403 (427)
238 KOG2321 WD40 repeat protein [G 99.6 1.8E-13 4E-18 120.9 22.2 282 4-374 57-344 (703)
239 KOG2314 Translation initiation 99.6 3.5E-13 7.6E-18 118.7 23.0 319 4-418 216-576 (698)
240 PF10282 Lactonase: Lactonase, 99.6 2.1E-12 4.5E-17 116.7 28.7 299 76-420 2-329 (345)
241 PF08662 eIF2A: Eukaryotic tra 99.6 9.9E-14 2.2E-18 113.2 17.3 113 261-419 59-183 (194)
242 KOG0280 Uncharacterized conser 99.6 1.1E-12 2.4E-17 106.5 22.1 206 61-292 69-286 (339)
243 KOG1354 Serine/threonine prote 99.6 1.2E-13 2.6E-18 114.4 16.9 261 4-293 31-362 (433)
244 KOG3881 Uncharacterized conser 99.6 3.5E-13 7.5E-18 113.7 18.8 199 11-240 116-326 (412)
245 KOG0974 WD-repeat protein WDR6 99.6 1.1E-12 2.5E-17 124.1 23.2 150 6-184 141-291 (967)
246 TIGR02800 propeller_TolB tol-p 99.6 2.2E-12 4.7E-17 121.1 24.9 234 82-394 169-417 (417)
247 COG2706 3-carboxymuconate cycl 99.5 1.3E-10 2.9E-15 97.9 31.4 301 19-394 15-345 (346)
248 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.2E-10 2.7E-15 102.2 32.1 275 83-422 27-337 (352)
249 KOG0974 WD-repeat protein WDR6 99.5 6.6E-13 1.4E-17 125.7 19.0 282 60-420 6-293 (967)
250 PRK04792 tolB translocation pr 99.5 3.6E-12 7.8E-17 119.0 23.8 235 84-396 199-447 (448)
251 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-12 2.3E-17 107.1 17.9 150 65-235 9-180 (194)
252 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.6E-10 3.4E-15 101.6 30.4 281 20-382 27-339 (352)
253 PRK00178 tolB translocation pr 99.5 8.3E-12 1.8E-16 117.2 24.2 235 84-396 180-428 (430)
254 PRK00178 tolB translocation pr 99.5 1.8E-11 3.8E-16 115.0 25.3 201 55-291 192-407 (430)
255 KOG1832 HIV-1 Vpr-binding prot 99.5 5.2E-14 1.1E-18 130.6 7.8 201 50-291 1090-1292(1516)
256 TIGR02800 propeller_TolB tol-p 99.5 1.3E-11 2.7E-16 116.0 24.0 200 55-290 183-397 (417)
257 TIGR03300 assembly_YfgL outer 99.5 5.6E-11 1.2E-15 109.7 27.4 306 10-412 65-376 (377)
258 KOG2315 Predicted translation 99.5 1.3E-11 2.8E-16 109.3 20.7 291 4-395 79-410 (566)
259 COG2706 3-carboxymuconate cycl 99.5 6.3E-10 1.4E-14 93.9 29.6 294 82-422 15-330 (346)
260 PRK01029 tolB translocation pr 99.5 3E-11 6.4E-16 111.9 23.8 228 129-423 166-411 (428)
261 KOG2041 WD40 repeat protein [G 99.5 1.6E-11 3.4E-16 111.9 20.9 290 60-415 13-337 (1189)
262 KOG4547 WD40 repeat-containing 99.5 4E-12 8.6E-17 113.3 16.5 210 6-235 1-221 (541)
263 PRK04792 tolB translocation pr 99.4 4.9E-11 1.1E-15 111.4 24.4 199 56-290 212-425 (448)
264 KOG1064 RAVE (regulator of V-A 99.4 8.5E-13 1.8E-17 131.4 12.8 187 7-242 2217-2406(2439)
265 COG5170 CDC55 Serine/threonine 99.4 6.1E-12 1.3E-16 103.1 15.5 229 60-293 25-312 (460)
266 KOG2314 Translation initiation 99.4 1.4E-10 3.1E-15 102.7 24.0 276 64-416 213-526 (698)
267 KOG1409 Uncharacterized conser 99.4 9.3E-12 2E-16 103.4 15.7 252 100-418 20-273 (404)
268 COG5354 Uncharacterized protei 99.4 2.7E-10 5.9E-15 99.9 25.1 285 57-418 28-351 (561)
269 KOG0280 Uncharacterized conser 99.4 4.7E-11 1E-15 97.2 18.7 207 64-292 124-335 (339)
270 PRK01029 tolB translocation pr 99.4 3.8E-10 8.3E-15 104.6 26.2 241 83-397 165-426 (428)
271 COG4946 Uncharacterized protei 99.4 8.3E-10 1.8E-14 96.1 25.6 191 170-420 284-482 (668)
272 KOG2041 WD40 repeat protein [G 99.4 8.1E-11 1.7E-15 107.4 20.1 246 4-282 20-279 (1189)
273 KOG4547 WD40 repeat-containing 99.4 4.5E-11 9.7E-16 106.7 17.8 190 164-416 6-221 (541)
274 KOG4190 Uncharacterized conser 99.4 5.3E-12 1.1E-16 111.6 11.3 177 53-240 727-912 (1034)
275 KOG0309 Conserved WD40 repeat- 99.4 1.9E-11 4.2E-16 111.7 14.3 290 61-417 24-341 (1081)
276 KOG1912 WD40 repeat protein [G 99.3 1.3E-09 2.9E-14 100.6 25.1 401 10-444 26-542 (1062)
277 KOG1064 RAVE (regulator of V-A 99.3 2.2E-11 4.9E-16 121.6 14.6 192 58-293 2205-2401(2439)
278 PF04762 IKI3: IKI3 family; I 99.3 4.3E-09 9.3E-14 105.7 30.5 336 3-417 125-521 (928)
279 KOG4714 Nucleoporin [Nuclear s 99.3 5.8E-11 1.3E-15 95.0 13.3 167 55-235 83-255 (319)
280 KOG4532 WD40-like repeat conta 99.3 9.8E-10 2.1E-14 88.5 19.7 247 10-292 84-333 (344)
281 TIGR03300 assembly_YfgL outer 99.3 2.9E-09 6.3E-14 98.3 26.1 277 73-420 65-343 (377)
282 COG4946 Uncharacterized protei 99.3 2.8E-09 6.1E-14 92.9 23.3 173 8-223 330-507 (668)
283 PLN02919 haloacid dehalogenase 99.3 6.6E-09 1.4E-13 106.4 27.9 286 108-419 571-892 (1057)
284 KOG1912 WD40 repeat protein [G 99.2 4.5E-09 9.8E-14 97.2 23.1 345 10-418 79-554 (1062)
285 KOG3914 WD repeat protein WDR4 99.2 2.5E-10 5.4E-15 97.3 13.9 167 2-190 66-232 (390)
286 PF04762 IKI3: IKI3 family; I 99.2 6.3E-08 1.4E-12 97.5 32.6 261 4-291 215-520 (928)
287 KOG0882 Cyclophilin-related pe 99.2 3.5E-10 7.6E-15 97.7 14.1 215 6-242 16-239 (558)
288 PRK04043 tolB translocation pr 99.2 2E-08 4.3E-13 92.6 25.0 200 152-424 189-409 (419)
289 PLN02919 haloacid dehalogenase 99.2 3.7E-08 8E-13 101.1 29.3 277 65-377 571-892 (1057)
290 KOG4190 Uncharacterized conser 99.2 7.9E-10 1.7E-14 98.1 13.4 201 8-237 745-951 (1034)
291 PRK11138 outer membrane biogen 99.1 1.1E-07 2.3E-12 88.3 27.0 316 10-414 69-393 (394)
292 COG5170 CDC55 Serine/threonine 99.1 1.2E-09 2.5E-14 90.0 12.0 265 3-290 31-367 (460)
293 KOG3914 WD repeat protein WDR4 99.1 3.8E-09 8.3E-14 90.2 15.3 164 64-244 65-233 (390)
294 PRK04043 tolB translocation pr 99.1 8.6E-08 1.9E-12 88.4 25.6 230 83-393 169-419 (419)
295 PF08450 SGL: SMP-30/Gluconola 99.1 5.1E-07 1.1E-11 77.9 29.0 225 66-402 4-242 (246)
296 KOG4532 WD40-like repeat conta 99.1 8.6E-08 1.9E-12 77.6 21.2 204 66-294 72-286 (344)
297 PF15492 Nbas_N: Neuroblastoma 99.1 1.2E-07 2.5E-12 78.0 21.9 148 66-224 2-167 (282)
298 PF07433 DUF1513: Protein of u 99.0 5.5E-07 1.2E-11 76.6 24.9 240 5-290 11-285 (305)
299 PF15492 Nbas_N: Neuroblastoma 99.0 6.1E-07 1.3E-11 73.9 23.9 236 110-420 3-264 (282)
300 KOG0882 Cyclophilin-related pe 99.0 7.7E-09 1.7E-13 89.6 13.4 272 102-428 7-318 (558)
301 KOG4714 Nucleoporin [Nuclear s 99.0 8.5E-09 1.8E-13 82.9 11.4 150 9-182 100-255 (319)
302 PF00400 WD40: WD domain, G-be 99.0 2.5E-09 5.3E-14 62.0 5.8 37 53-89 3-39 (39)
303 KOG2695 WD40 repeat protein [G 99.0 2.6E-09 5.7E-14 89.2 7.9 159 167-385 228-388 (425)
304 PF00400 WD40: WD domain, G-be 98.9 2.2E-09 4.7E-14 62.2 5.4 39 375-413 1-39 (39)
305 KOG0309 Conserved WD40 repeat- 98.9 1.2E-08 2.6E-13 93.9 11.7 128 55-185 108-236 (1081)
306 PF07433 DUF1513: Protein of u 98.9 3.9E-06 8.4E-11 71.6 24.9 208 64-293 7-250 (305)
307 KOG2695 WD40 repeat protein [G 98.9 1E-08 2.2E-13 85.9 9.3 161 68-244 218-386 (425)
308 KOG1832 HIV-1 Vpr-binding prot 98.9 1.6E-09 3.4E-14 101.7 3.6 216 146-401 1097-1317(1516)
309 PRK11138 outer membrane biogen 98.8 2.8E-06 6E-11 78.9 24.1 227 10-293 120-356 (394)
310 KOG2066 Vacuolar assembly/sort 98.8 7.3E-07 1.6E-11 83.5 19.5 182 10-236 49-235 (846)
311 KOG1645 RING-finger-containing 98.8 9.2E-07 2E-11 76.0 17.6 96 85-186 175-271 (463)
312 PF13360 PQQ_2: PQQ-like domai 98.8 3.1E-06 6.8E-11 72.8 21.6 233 82-379 2-236 (238)
313 PF08450 SGL: SMP-30/Gluconola 98.8 1.6E-05 3.5E-10 68.6 25.8 214 9-278 11-242 (246)
314 KOG3617 WD40 and TPR repeat-co 98.8 6.2E-07 1.3E-11 84.4 17.5 186 5-235 22-221 (1416)
315 KOG1275 PAB-dependent poly(A) 98.8 2.6E-07 5.7E-12 87.5 14.8 184 9-233 146-341 (1118)
316 PF13360 PQQ_2: PQQ-like domai 98.7 3.6E-06 7.8E-11 72.5 20.8 228 19-293 2-233 (238)
317 cd00216 PQQ_DH Dehydrogenases 98.7 3E-05 6.5E-10 73.8 27.7 213 11-241 62-326 (488)
318 KOG1645 RING-finger-containing 98.7 1.7E-06 3.8E-11 74.4 16.9 86 52-140 184-270 (463)
319 KOG1275 PAB-dependent poly(A) 98.7 5.7E-07 1.2E-11 85.3 14.8 141 73-234 147-296 (1118)
320 KOG1920 IkappaB kinase complex 98.7 2.4E-05 5.2E-10 77.2 26.1 245 61-375 68-324 (1265)
321 KOG2066 Vacuolar assembly/sort 98.7 8E-07 1.7E-11 83.2 15.2 191 61-290 39-233 (846)
322 KOG2114 Vacuolar assembly/sort 98.7 8.2E-06 1.8E-10 77.3 21.4 220 111-389 30-260 (933)
323 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00014 2.9E-09 59.4 27.5 146 9-183 22-167 (354)
324 PF06977 SdiA-regulated: SdiA- 98.6 3.4E-05 7.4E-10 65.0 22.7 221 54-287 14-247 (248)
325 KOG1008 Uncharacterized conser 98.6 5.7E-08 1.2E-12 88.3 6.2 206 61-291 56-276 (783)
326 KOG3621 WD40 repeat-containing 98.6 4.4E-05 9.5E-10 71.0 23.2 120 60-182 32-155 (726)
327 PF06433 Me-amine-dh_H: Methyl 98.6 9.5E-06 2.1E-10 70.1 17.6 278 83-422 17-327 (342)
328 KOG2114 Vacuolar assembly/sort 98.5 1.7E-05 3.7E-10 75.2 20.0 196 68-291 30-244 (933)
329 KOG3621 WD40 repeat-containing 98.5 5.8E-05 1.2E-09 70.3 22.9 153 6-184 41-200 (726)
330 PF06433 Me-amine-dh_H: Methyl 98.5 2.7E-05 5.8E-10 67.4 19.3 282 20-384 17-331 (342)
331 KOG1008 Uncharacterized conser 98.5 1.2E-07 2.5E-12 86.3 5.4 201 5-236 65-277 (783)
332 PF08596 Lgl_C: Lethal giant l 98.5 4.1E-05 8.9E-10 69.7 20.2 253 106-414 3-334 (395)
333 PRK02888 nitrous-oxide reducta 98.5 4.2E-05 9.1E-10 71.8 20.2 324 13-405 69-451 (635)
334 PF08596 Lgl_C: Lethal giant l 98.4 3.9E-05 8.5E-10 69.8 19.0 265 3-290 6-335 (395)
335 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00014 3E-09 66.4 22.6 305 7-404 1-346 (353)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.0021 4.6E-08 61.6 31.2 215 10-239 69-338 (527)
337 PF14583 Pectate_lyase22: Olig 98.4 0.0015 3.3E-08 58.0 26.8 274 68-415 42-381 (386)
338 KOG1920 IkappaB kinase complex 98.4 6.1E-05 1.3E-09 74.5 19.6 211 151-416 69-323 (1265)
339 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0032 6.9E-08 60.5 30.6 209 73-295 69-338 (527)
340 PRK02888 nitrous-oxide reducta 98.3 8.1E-05 1.8E-09 69.9 18.7 196 6-235 200-405 (635)
341 PF04053 Coatomer_WDAD: Coatom 98.3 0.00039 8.4E-09 64.4 22.7 232 105-418 33-265 (443)
342 PF00780 CNH: CNH domain; Int 98.3 0.0013 2.7E-08 58.0 24.9 244 71-385 5-267 (275)
343 PF11768 DUF3312: Protein of u 98.3 0.0035 7.6E-08 57.9 27.0 71 345-418 262-332 (545)
344 PF11768 DUF3312: Protein of u 98.3 5.5E-05 1.2E-09 69.3 15.5 75 59-138 257-331 (545)
345 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0019 4E-08 53.1 24.9 110 73-191 23-133 (354)
346 cd00216 PQQ_DH Dehydrogenases 98.2 0.0024 5.2E-08 61.0 27.1 212 73-297 61-326 (488)
347 KOG3617 WD40 and TPR repeat-co 98.2 5E-05 1.1E-09 72.1 15.0 111 65-183 19-133 (1416)
348 COG0823 TolB Periplasmic compo 98.1 0.0002 4.3E-09 66.1 17.1 190 146-405 188-389 (425)
349 COG0823 TolB Periplasmic compo 98.1 0.00034 7.4E-09 64.5 18.6 159 102-292 190-360 (425)
350 PF06977 SdiA-regulated: SdiA- 98.1 0.00089 1.9E-08 56.6 19.4 222 144-412 15-247 (248)
351 PF14727 PHTB1_N: PTHB1 N-term 98.1 0.0093 2E-07 54.6 26.5 295 72-418 36-363 (418)
352 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00037 8E-09 49.5 13.0 102 64-177 2-110 (111)
353 COG3490 Uncharacterized protei 98.0 0.0015 3.2E-08 54.5 18.1 205 55-290 113-348 (366)
354 PF08553 VID27: VID27 cytoplas 98.0 0.0016 3.5E-08 64.0 21.4 204 73-291 493-725 (794)
355 KOG1897 Damage-specific DNA bi 98.0 0.0096 2.1E-07 58.5 25.9 68 345-416 832-899 (1096)
356 COG3391 Uncharacterized conser 98.0 0.015 3.2E-07 53.7 27.5 267 85-421 13-289 (381)
357 PF03178 CPSF_A: CPSF A subuni 97.9 0.01 2.2E-07 53.6 23.8 135 83-233 2-156 (321)
358 PF05096 Glu_cyclase_2: Glutam 97.9 0.009 2E-07 50.3 21.2 218 49-282 31-251 (264)
359 COG3386 Gluconolactonase [Carb 97.9 0.0097 2.1E-07 52.4 22.2 227 111-403 31-273 (307)
360 smart00320 WD40 WD40 repeats. 97.9 4.2E-05 9.2E-10 43.6 5.6 39 375-413 2-40 (40)
361 PF04841 Vps16_N: Vps16, N-ter 97.9 0.021 4.5E-07 53.1 27.3 53 345-398 219-272 (410)
362 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0035 7.6E-08 57.3 20.2 189 70-292 1-220 (353)
363 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.021 4.5E-07 52.3 25.6 91 66-159 6-117 (415)
364 PF02897 Peptidase_S9_N: Proly 97.8 0.027 5.9E-07 53.0 26.8 118 62-183 124-262 (414)
365 smart00320 WD40 WD40 repeats. 97.8 5.3E-05 1.2E-09 43.2 5.1 36 54-89 5-40 (40)
366 PF04053 Coatomer_WDAD: Coatom 97.8 0.00058 1.3E-08 63.3 14.1 141 205-417 34-175 (443)
367 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0031 6.8E-08 44.9 13.4 104 107-230 2-110 (111)
368 PF00780 CNH: CNH domain; Int 97.7 0.018 3.8E-07 50.7 21.7 250 117-422 6-262 (275)
369 PF08553 VID27: VID27 cytoplas 97.7 0.0058 1.2E-07 60.2 19.5 148 216-415 493-647 (794)
370 PF03178 CPSF_A: CPSF A subuni 97.7 0.0097 2.1E-07 53.7 20.2 145 73-235 42-203 (321)
371 COG3391 Uncharacterized conser 97.7 0.04 8.6E-07 50.9 29.0 267 63-397 32-310 (381)
372 PF04841 Vps16_N: Vps16, N-ter 97.7 0.042 9.2E-07 51.1 28.8 195 67-290 34-246 (410)
373 COG3204 Uncharacterized protei 97.7 0.023 5.1E-07 48.0 21.3 177 57-236 81-265 (316)
374 PF14583 Pectate_lyase22: Olig 97.7 0.013 2.7E-07 52.4 19.4 244 89-406 16-303 (386)
375 KOG4640 Anaphase-promoting com 97.7 0.00014 3E-09 66.9 7.2 88 5-114 27-115 (665)
376 PF05096 Glu_cyclase_2: Glutam 97.6 0.018 3.9E-07 48.6 18.2 187 8-223 54-250 (264)
377 KOG4640 Anaphase-promoting com 97.6 0.00041 8.9E-09 64.0 9.1 95 61-160 20-115 (665)
378 KOG2395 Protein involved in va 97.5 0.0065 1.4E-07 55.3 15.7 151 117-291 344-501 (644)
379 COG3386 Gluconolactonase [Carb 97.5 0.051 1.1E-06 47.9 21.3 194 67-290 30-243 (307)
380 COG3490 Uncharacterized protei 97.5 0.043 9.4E-07 46.1 18.8 213 65-293 71-313 (366)
381 PF02897 Peptidase_S9_N: Proly 97.5 0.039 8.4E-07 52.0 21.5 237 4-293 129-407 (414)
382 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.11 2.4E-06 47.6 21.2 76 345-421 310-404 (415)
383 PF05694 SBP56: 56kDa selenium 97.3 0.14 2.9E-06 46.6 20.5 251 9-279 86-391 (461)
384 KOG2395 Protein involved in va 97.3 0.0087 1.9E-07 54.6 13.1 141 218-414 348-499 (644)
385 KOG4441 Proteins containing BT 97.3 0.082 1.8E-06 51.4 20.8 152 71-239 283-457 (571)
386 PHA02713 hypothetical protein; 97.2 0.058 1.3E-06 52.5 19.4 97 84-186 273-380 (557)
387 KOG4441 Proteins containing BT 97.1 0.1 2.2E-06 50.8 20.1 236 117-424 284-555 (571)
388 COG3204 Uncharacterized protei 97.1 0.13 2.9E-06 43.7 20.2 145 130-290 65-210 (316)
389 PF07995 GSDH: Glucose / Sorbo 97.1 0.19 4.2E-06 45.3 30.1 76 332-410 245-330 (331)
390 PF15390 DUF4613: Domain of un 97.1 0.27 5.8E-06 46.2 25.7 158 61-237 19-189 (671)
391 PHA02713 hypothetical protein; 97.0 0.036 7.9E-07 53.9 16.2 149 72-237 351-536 (557)
392 KOG2444 WD40 repeat protein [G 97.0 0.0033 7.1E-08 50.8 7.4 105 9-137 69-178 (238)
393 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0027 5.8E-08 37.6 5.2 34 61-95 11-44 (47)
394 PRK13616 lipoprotein LpqB; Pro 97.0 0.19 4.2E-06 49.0 20.5 166 105-290 350-527 (591)
395 PRK13616 lipoprotein LpqB; Pro 97.0 0.12 2.6E-06 50.4 18.9 108 64-180 399-524 (591)
396 PF12234 Rav1p_C: RAVE protein 96.9 0.076 1.6E-06 51.2 16.8 127 51-180 19-155 (631)
397 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0052 1.1E-07 36.4 5.0 33 385-417 11-43 (47)
398 KOG2444 WD40 repeat protein [G 96.8 0.0072 1.6E-07 48.9 7.3 65 353-417 112-179 (238)
399 PF10168 Nup88: Nuclear pore c 96.6 0.54 1.2E-05 47.0 20.5 127 11-139 34-182 (717)
400 PF14870 PSII_BNR: Photosynthe 96.6 0.46 9.9E-06 41.8 24.6 277 61-412 16-301 (302)
401 PRK10115 protease 2; Provision 96.6 1 2.2E-05 45.3 27.4 114 62-180 127-254 (686)
402 COG5276 Uncharacterized conser 96.5 0.43 9.2E-06 40.7 26.2 159 103-293 85-244 (370)
403 TIGR03074 PQQ_membr_DH membran 96.5 0.9 1.9E-05 45.9 21.4 129 117-245 193-355 (764)
404 TIGR03074 PQQ_membr_DH membran 96.4 1.2 2.7E-05 44.9 22.3 215 10-241 194-484 (764)
405 KOG2079 Vacuolar assembly/sort 96.4 0.017 3.7E-07 57.4 8.5 70 344-416 132-204 (1206)
406 PHA03098 kelch-like protein; P 96.3 0.3 6.5E-06 47.8 17.2 150 72-238 342-515 (534)
407 PF10647 Gmad1: Lipoprotein Lp 96.2 0.71 1.5E-05 39.9 20.6 153 63-225 25-186 (253)
408 KOG2079 Vacuolar assembly/sort 96.2 0.027 5.8E-07 56.1 8.7 102 72-180 98-202 (1206)
409 KOG3630 Nuclear pore complex, 96.2 0.11 2.3E-06 52.4 12.7 149 106-280 102-262 (1405)
410 PF14727 PHTB1_N: PTHB1 N-term 96.0 0.45 9.8E-06 43.9 15.4 161 212-414 33-203 (418)
411 PHA02790 Kelch-like protein; P 96.0 0.97 2.1E-05 43.4 18.5 146 72-237 318-473 (480)
412 KOG4499 Ca2+-binding protein R 96.0 0.7 1.5E-05 38.0 18.1 48 347-395 216-263 (310)
413 PF15390 DUF4613: Domain of un 96.0 1.4 3.1E-05 41.6 26.4 121 60-183 55-188 (671)
414 PF08728 CRT10: CRT10; InterP 95.9 0.85 1.8E-05 44.9 17.0 152 73-233 49-245 (717)
415 PF03022 MRJP: Major royal jel 95.9 0.62 1.3E-05 41.0 15.1 198 174-403 35-253 (287)
416 TIGR02604 Piru_Ver_Nterm putat 95.7 1.8 3.8E-05 40.0 23.8 102 63-170 15-142 (367)
417 KOG3630 Nuclear pore complex, 95.6 0.25 5.5E-06 50.0 12.7 152 205-403 102-261 (1405)
418 COG3823 Glutamine cyclotransfe 95.6 0.58 1.3E-05 37.7 12.3 135 80-222 108-247 (262)
419 PF12234 Rav1p_C: RAVE protein 95.6 0.53 1.2E-05 45.7 14.5 126 151-291 30-157 (631)
420 KOG4499 Ca2+-binding protein R 95.5 1.1 2.5E-05 36.9 16.3 198 73-293 27-244 (310)
421 PF10647 Gmad1: Lipoprotein Lp 95.4 1.5 3.3E-05 37.8 20.0 113 152-291 25-145 (253)
422 PHA03098 kelch-like protein; P 95.3 1.6 3.4E-05 42.9 17.4 149 72-238 294-468 (534)
423 PF05694 SBP56: 56kDa selenium 95.2 2.5 5.4E-05 38.8 18.9 123 64-186 183-347 (461)
424 PF14870 PSII_BNR: Photosynthe 95.1 2.2 4.8E-05 37.7 25.2 192 63-286 63-257 (302)
425 PF10313 DUF2415: Uncharacteri 95.1 0.13 2.9E-06 29.4 5.4 32 62-93 1-35 (43)
426 KOG1897 Damage-specific DNA bi 95.0 4.5 9.8E-05 41.0 29.2 319 9-415 594-942 (1096)
427 PF10313 DUF2415: Uncharacteri 95.0 0.11 2.3E-06 29.8 4.8 31 205-235 2-34 (43)
428 PF11635 Med16: Mediator compl 94.9 5.2 0.00011 40.9 21.0 65 345-410 262-345 (753)
429 PF08728 CRT10: CRT10; InterP 94.9 1.2 2.6E-05 43.8 14.5 116 63-180 102-245 (717)
430 PF07995 GSDH: Glucose / Sorbo 94.8 3 6.5E-05 37.8 22.0 108 4-129 7-136 (331)
431 TIGR03118 PEPCTERM_chp_1 conse 94.7 2.7 5.8E-05 36.5 22.2 232 152-420 24-284 (336)
432 PRK13684 Ycf48-like protein; P 94.6 3.4 7.3E-05 37.5 27.5 155 204-415 173-331 (334)
433 COG5167 VID27 Protein involved 94.4 4.4 9.5E-05 37.8 15.8 62 354-416 572-633 (776)
434 TIGR02604 Piru_Ver_Nterm putat 94.2 4.5 9.8E-05 37.3 24.0 72 105-181 14-99 (367)
435 PF07569 Hira: TUP1-like enhan 94.1 0.38 8.2E-06 40.3 8.3 75 216-292 22-97 (219)
436 COG4257 Vgb Streptogramin lyas 94.0 3.4 7.3E-05 35.2 19.9 240 105-423 62-313 (353)
437 PF10214 Rrn6: RNA polymerase 94.0 8.5 0.00018 39.6 26.6 89 203-293 145-235 (765)
438 PF07569 Hira: TUP1-like enhan 93.9 0.45 9.7E-06 39.9 8.5 70 352-422 19-102 (219)
439 KOG4659 Uncharacterized conser 93.8 10 0.00022 39.9 21.1 19 384-402 660-678 (1899)
440 PF11635 Med16: Mediator compl 93.7 9.5 0.00021 39.1 19.1 209 76-285 65-345 (753)
441 KOG2377 Uncharacterized conser 93.5 3.5 7.6E-05 37.8 13.4 125 259-422 64-192 (657)
442 PF14761 HPS3_N: Hermansky-Pud 93.4 3.8 8.2E-05 33.7 14.1 117 166-292 31-165 (215)
443 TIGR03118 PEPCTERM_chp_1 conse 93.3 5 0.00011 34.9 25.1 122 106-236 24-172 (336)
444 COG4590 ABC-type uncharacteriz 93.2 0.44 9.6E-06 43.2 7.5 169 101-295 217-391 (733)
445 KOG2377 Uncharacterized conser 93.0 3 6.6E-05 38.2 12.3 120 60-184 65-188 (657)
446 PF10168 Nup88: Nuclear pore c 93.0 8.9 0.00019 38.7 16.9 94 261-375 84-181 (717)
447 KOG2280 Vacuolar assembly/sort 92.9 10 0.00022 37.4 18.9 52 345-397 219-271 (829)
448 KOG1983 Tomosyn and related SN 92.9 4.7 0.0001 42.4 15.4 111 62-183 36-146 (993)
449 PRK10115 protease 2; Provision 92.9 12 0.00026 37.9 25.2 190 4-234 132-344 (686)
450 COG5167 VID27 Protein involved 92.7 3.3 7.2E-05 38.5 12.3 61 117-181 572-632 (776)
451 KOG1916 Nuclear protein, conta 92.7 0.16 3.4E-06 50.0 4.4 69 351-420 243-328 (1283)
452 KOG4460 Nuclear pore complex, 92.6 4.5 9.8E-05 37.8 13.1 75 13-88 55-130 (741)
453 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.86 1.9E-05 26.1 6.0 40 353-393 1-41 (42)
454 PRK13684 Ycf48-like protein; P 92.4 8.2 0.00018 35.0 20.8 161 102-289 170-330 (334)
455 PF12657 TFIIIC_delta: Transcr 92.4 2.2 4.8E-05 34.3 10.2 30 344-374 87-122 (173)
456 COG3292 Predicted periplasmic 92.4 8.5 0.00018 36.6 14.6 54 345-401 421-479 (671)
457 PF14761 HPS3_N: Hermansky-Pud 92.4 5.4 0.00012 32.8 15.1 149 74-233 29-213 (215)
458 PHA02790 Kelch-like protein; P 92.4 5.4 0.00012 38.4 14.4 104 72-184 362-473 (480)
459 PF10214 Rrn6: RNA polymerase 92.2 12 0.00025 38.6 17.2 118 62-183 146-278 (765)
460 PF12768 Rax2: Cortical protei 92.1 5.4 0.00012 34.9 12.6 73 20-114 16-98 (281)
461 KOG1900 Nuclear pore complex, 91.6 4.6 9.9E-05 42.3 13.2 77 336-416 172-273 (1311)
462 PLN00033 photosystem II stabil 91.4 12 0.00026 34.8 17.7 150 64-231 241-396 (398)
463 KOG2247 WD40 repeat-containing 91.2 0.022 4.9E-07 51.6 -2.6 135 9-173 45-180 (615)
464 KOG1983 Tomosyn and related SN 90.5 6.9 0.00015 41.2 13.7 68 345-419 201-268 (993)
465 PF13449 Phytase-like: Esteras 89.9 15 0.00032 33.3 16.1 72 345-417 149-251 (326)
466 COG3823 Glutamine cyclotransfe 89.9 9.6 0.00021 31.1 14.0 106 117-238 55-162 (262)
467 PLN02193 nitrile-specifier pro 89.8 20 0.00042 34.5 18.1 109 72-186 278-415 (470)
468 KOG2280 Vacuolar assembly/sort 89.2 25 0.00053 34.9 21.3 51 82-137 63-113 (829)
469 KOG3616 Selective LIM binding 89.1 2.1 4.6E-05 41.7 8.1 110 105-232 15-124 (1636)
470 TIGR03606 non_repeat_PQQ dehyd 89.1 16 0.00035 34.5 13.7 54 61-114 29-88 (454)
471 PF05935 Arylsulfotrans: Aryls 89.0 22 0.00049 34.2 15.2 157 74-239 116-306 (477)
472 PLN02153 epithiospecifier prot 88.9 18 0.00039 33.0 17.3 110 72-186 137-289 (341)
473 KOG1916 Nuclear protein, conta 88.9 0.88 1.9E-05 45.2 5.5 71 63-137 182-266 (1283)
474 KOG2247 WD40 repeat-containing 88.5 0.087 1.9E-06 48.0 -1.2 143 107-281 37-179 (615)
475 KOG1900 Nuclear pore complex, 88.2 9.8 0.00021 40.1 12.4 149 5-182 86-273 (1311)
476 TIGR02276 beta_rpt_yvtn 40-res 88.0 1.9 4.2E-05 24.5 4.8 31 160-190 1-31 (42)
477 PF11715 Nup160: Nucleoporin N 87.9 1.3 2.8E-05 43.5 6.3 38 62-99 215-256 (547)
478 PF02333 Phytase: Phytase; In 87.9 22 0.00047 32.6 21.2 195 8-235 66-291 (381)
479 PF14781 BBS2_N: Ciliary BBSom 87.7 10 0.00022 28.6 11.6 111 111-235 5-126 (136)
480 COG5276 Uncharacterized conser 87.6 18 0.00039 31.4 26.0 188 11-236 97-287 (370)
481 PF14781 BBS2_N: Ciliary BBSom 87.6 10 0.00022 28.5 12.0 113 66-184 3-128 (136)
482 PF05935 Arylsulfotrans: Aryls 87.6 28 0.0006 33.5 18.7 118 67-191 153-311 (477)
483 PF13449 Phytase-like: Esteras 87.3 22 0.00049 32.1 16.5 126 151-279 20-164 (326)
484 PF02333 Phytase: Phytase; In 87.1 24 0.00052 32.4 19.3 197 71-291 66-291 (381)
485 TIGR03606 non_repeat_PQQ dehyd 87.0 28 0.00061 33.0 14.6 62 149-214 28-89 (454)
486 PF08801 Nucleoporin_N: Nup133 86.8 16 0.00035 34.5 12.7 31 204-235 190-220 (422)
487 smart00036 CNH Domain found in 86.4 24 0.00051 31.6 28.9 60 73-137 13-74 (302)
488 PF07250 Glyoxal_oxid_N: Glyox 86.1 21 0.00044 30.5 11.4 145 85-238 48-201 (243)
489 PF07676 PD40: WD40-like Beta 85.9 3.7 8E-05 23.0 5.0 32 381-412 4-38 (39)
490 PF12657 TFIIIC_delta: Transcr 85.4 10 0.00022 30.5 9.2 32 151-182 86-122 (173)
491 TIGR03547 muta_rot_YjhT mutatr 84.9 31 0.00067 31.6 15.7 12 83-94 168-179 (346)
492 TIGR03548 mutarot_permut cycli 84.7 30 0.00065 31.2 17.0 68 72-141 123-199 (323)
493 PF11715 Nup160: Nucleoporin N 84.6 5 0.00011 39.5 8.5 75 117-191 157-258 (547)
494 KOG1896 mRNA cleavage and poly 84.4 60 0.0013 34.5 16.3 145 74-234 1047-1213(1366)
495 PF07676 PD40: WD40-like Beta 84.0 5.6 0.00012 22.2 5.3 30 149-178 7-38 (39)
496 PLN00033 photosystem II stabil 83.9 37 0.00081 31.7 31.7 114 261-412 280-396 (398)
497 COG1520 FOG: WD40-like repeat 83.7 37 0.00079 31.4 18.6 197 12-238 70-272 (370)
498 COG5290 IkappaB kinase complex 83.3 4.3 9.3E-05 40.0 6.9 99 65-170 250-356 (1243)
499 COG4257 Vgb Streptogramin lyas 83.3 29 0.00063 29.9 19.7 190 62-291 62-263 (353)
500 PLN02153 epithiospecifier prot 82.9 37 0.00081 31.0 22.0 111 72-187 85-231 (341)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-60 Score=387.58 Aligned_cols=321 Identities=19% Similarity=0.248 Sum_probs=288.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
++.|+|+|++||+|+.|.++|+||+.|.... .++++|...|.|++|+|||+.||+|+.|
T Consensus 120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---------------------~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---------------------FTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred EEEecCCCceEEecCCCceEEeeccCCCCcc---------------------eeecCCccEEEEEEECCCcchhhccccC
Confidence 4679999999999999999999999987766 7899999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCC---CCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
|.|++||.++|+++..-+.+|...|++++|.|. ...++|++++.||.|+|||+..+.++.. +.+|+.+|+|+.|-
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--LSGHTASVTCVRWG 256 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE--eccCccceEEEEEc
Confidence 999999999999988888999999999999874 2567999999999999999988877765 99999999999997
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc-----------CC--------------
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-----------PR-------------- 214 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~-------------- 214 (492)
-+| ++++|+.|++|++|+...|.+...++. |...|+.++.+ |.
T Consensus 257 G~g--liySgS~DrtIkvw~a~dG~~~r~lkG----------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 257 GEG--LIYSGSQDRTIKVWRALDGKLCRELKG----------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred CCc--eEEecCCCceEEEEEccchhHHHhhcc----------cchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 665 899999999999999999998887764 33466666655 22
Q ss_pred ----------CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCc
Q 011160 215 ----------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (492)
Q Consensus 215 ----------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~ 283 (492)
++..+++|+.|.++.+|+....+ .+.....+|+.-|+.+.||||+++||+++ |..
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--------------KPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccc--------------cchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 23369999999999999976543 24456677999999999999999999999 778
Q ss_pred EEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec
Q 011160 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (492)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~ 363 (492)
|++|+.++ .+.+.+|+||... |..++| +.|.++|++|+.
T Consensus 391 VkLW~g~t--------------------------------------Gk~lasfRGHv~~--VYqvaw-saDsRLlVS~Sk 429 (480)
T KOG0271|consen 391 VKLWDGRT--------------------------------------GKFLASFRGHVAA--VYQVAW-SADSRLLVSGSK 429 (480)
T ss_pred eeeeeCCC--------------------------------------cchhhhhhhccce--eEEEEe-ccCccEEEEcCC
Confidence 99999998 4678899999987 999999 999999999999
Q ss_pred cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
|.++++|++.+.++...|.+|...|.++.|+|||..+++|+.|+.+++|.
T Consensus 430 DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-54 Score=356.27 Aligned_cols=316 Identities=22% Similarity=0.307 Sum_probs=275.3
Q ss_pred eeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
.+...+.||.++|.|++|+|+|..|+||+.|.++|+||+.+..+..+. ++|...|.|++|+| ||+.||+|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsP--Dgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSP--DGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECC--CcchhhccccCCeEE
Confidence 455678899999999999999999999999999999999999998888 89999999999999 999999999999999
Q ss_pred EEecccCCeeeeEEeecCCCceEEEEEcC-----CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 132 HAQILERGGVETKLLGKHQGRAHKLAIEP-----GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
+||..+++++. ..+.+|...|++++|.| .. .+|++++.||.|+|||+..+.++..+.. |..+|
T Consensus 183 lwdpktg~~~g-~~l~gH~K~It~Lawep~hl~p~~-r~las~skDg~vrIWd~~~~~~~~~lsg----------HT~~V 250 (480)
T KOG0271|consen 183 LWDPKTGQQIG-RALRGHKKWITALAWEPLHLVPPC-RRLASSSKDGSVRIWDTKLGTCVRTLSG----------HTASV 250 (480)
T ss_pred EecCCCCCccc-ccccCcccceeEEeecccccCCCc-cceecccCCCCEEEEEccCceEEEEecc----------Cccce
Confidence 99999888765 35899999999999987 33 5789999999999999999998887765 66689
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc-----------CCC--
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-----------DQS-- 273 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----------~~~-- 273 (492)
+|+.|--+ .++++|+.|++|++|+...+++. ..+.+|...|+.++.+ |.+
T Consensus 251 TCvrwGG~--gliySgS~DrtIkvw~a~dG~~~---------------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 251 TCVRWGGE--GLIYSGSQDRTIKVWRALDGKLC---------------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred EEEEEcCC--ceEEecCCCceEEEEEccchhHH---------------Hhhcccchheeeeeccchhhhhcccccccccc
Confidence 99999854 59999999999999999887643 3455677777777766 223
Q ss_pred -----------------------CeeEeecCC-cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcc
Q 011160 274 -----------------------ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (492)
Q Consensus 274 -----------------------~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (492)
..|++++|+ ++++|+....
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~------------------------------------- 356 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS------------------------------------- 356 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-------------------------------------
Confidence 359999976 8999987653
Q ss_pred ccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCE
Q 011160 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 409 (492)
.+++..+.+|+.. |+.+.| |||++|||+++.|..|++|+-.+|+.+.+|++|-++|+.++|+.|.++|++|+.|.++
T Consensus 357 kkpi~rmtgHq~l--Vn~V~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 357 KKPITRMTGHQAL--VNHVSF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred ccchhhhhchhhh--eeeEEE-CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence 4567788999987 999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCC-cccCcccccccccccccccccCchhhH
Q 011160 410 KILTPNAADRA-TLPTNIEQFKPKATRWMHHVLSPEDLM 447 (492)
Q Consensus 410 ~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (492)
++|++.+.++. .++++ ...++.+..++|+.
T Consensus 434 Kvw~V~tkKl~~DLpGh--------~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 434 KVWDVRTKKLKQDLPGH--------ADEVFAVDWSPDGQ 464 (480)
T ss_pred EEEEeeeeeecccCCCC--------CceEEEEEecCCCc
Confidence 99999998764 45555 45677777666554
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-51 Score=343.36 Aligned_cols=288 Identities=23% Similarity=0.318 Sum_probs=261.0
Q ss_pred eecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
.--|-+.+|..+.|++++..|+||+.+|.++||+..+...+..+ .+|...|.++.|+|..++..+++|+.||++++|++
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 33466789999999999999999999999999999999887777 89999999999999434678999999999999999
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
.+...+.. +.+|...|..++|+|+| ++|++++.|.+-++||++++..+..... |...|.+++|+|+
T Consensus 249 ~~e~~l~~--l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEG----------Hs~~v~~iaf~~D- 314 (459)
T KOG0272|consen 249 SQETPLQD--LEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEG----------HSKGVFSIAFQPD- 314 (459)
T ss_pred CCCcchhh--hhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcc----------cccccceeEecCC-
Confidence 88766665 89999999999999999 6899999999999999999987765543 6668999999998
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~ 294 (492)
|.++++|+.|..-+|||+++++.+ .++.+|..+|.+++|+|+|..||+|+ |++++|||++.
T Consensus 315 GSL~~tGGlD~~~RvWDlRtgr~i---------------m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~--- 376 (459)
T KOG0272|consen 315 GSLAATGGLDSLGRVWDLRTGRCI---------------MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM--- 376 (459)
T ss_pred CceeeccCccchhheeecccCcEE---------------EEecccccceeeEeECCCceEEeecCCCCcEEEeeecc---
Confidence 789999999999999999998732 34556999999999999999999999 66899999987
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC-CCcEEEEeeccCeEEEEecC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~g~~l~sg~~dg~i~iwd~~ 373 (492)
...+.++.+|.+- |+.|.| +| .|.+|++++.|++++||...
T Consensus 377 -----------------------------------r~~ly~ipAH~nl--VS~Vk~-~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 377 -----------------------------------RSELYTIPAHSNL--VSQVKY-SPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred -----------------------------------cccceecccccch--hhheEe-cccCCeEEEEcccCcceeeecCC
Confidence 4567888899987 899999 98 88999999999999999999
Q ss_pred CCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
++.+++.+.||.+.|.++..++++.+++|++.|.++++|..
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 99999999999999999999999999999999999999963
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-50 Score=334.04 Aligned_cols=275 Identities=21% Similarity=0.288 Sum_probs=253.1
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC--CCEEEEec
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISGS 80 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~ 80 (492)
.++|+++++.||||+.+|.++||+..++..+ ++|.||.+.|.++.|+|. +..||||+
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---------------------~~l~gH~~~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---------------------QTLRGHTSRVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCCccee---------------------EEEeccccceeeEEEccCCCccceeeec
Confidence 4689999999999999999999999977665 899999999999999996 67899999
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.||++++|++.+..++..+ .+|...|..++|+| +|++|+|++.|.+-++||+.++..... ..+|...|.+++|+|
T Consensus 239 ~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~--QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 239 ADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLL--QEGHSKGVFSIAFQP 313 (459)
T ss_pred cCCceeeeccCCCcchhhh-hcchhhheeeeecC--CCceeeecccccchhhcccccchhhHh--hcccccccceeEecC
Confidence 9999999999988888888 89999999999999 999999999999999999999887765 789999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
|| .++++|+.|..-+|||++++.++..+.. |..+|..++|+|. |..|++|+.|++++|||++..+.
T Consensus 314 DG-SL~~tGGlD~~~RvWDlRtgr~im~L~g----------H~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~-- 379 (459)
T KOG0272|consen 314 DG-SLAATGGLDSLGRVWDLRTGRCIMFLAG----------HIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSE-- 379 (459)
T ss_pred CC-ceeeccCccchhheeecccCcEEEEecc----------cccceeeEeECCC-ceEEeecCCCCcEEEeeeccccc--
Confidence 99 5999999999999999999999988875 5668999999997 89999999999999999998763
Q ss_pred CCCCCCCccccCCCCcCCCcccceEEEEEcC-CCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
...+..|..-|+.+.|+| .|.+|++++ |+++++|...+
T Consensus 380 -------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--------------------------- 419 (459)
T KOG0272|consen 380 -------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--------------------------- 419 (459)
T ss_pred -------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC---------------------------
Confidence 345667899999999999 688999999 77999999887
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
..+++.+.||... |.++.+ +++++++++++.|.++++|.
T Consensus 420 -----------~~~~ksLaGHe~k--V~s~Di-s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 -----------WSPLKSLAGHEGK--VISLDI-SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -----------cccchhhcCCccc--eEEEEe-ccCCceEEEeccCceeeecc
Confidence 5788999999998 999998 99999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-46 Score=299.54 Aligned_cols=297 Identities=18% Similarity=0.289 Sum_probs=262.8
Q ss_pred eeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 48 VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 48 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
.++++..++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.+ .-....|..++|+| .++++|.|+.|
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sP--Sg~~VAcGGLd 118 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSP--SGNFVACGGLD 118 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECC--CCCeEEecCcC
Confidence 4556778999999999999999999999999999999999999988887777 56677899999999 99999999999
Q ss_pred CcEEEEecccC--C--eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 128 GQVRHAQILER--G--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 128 g~v~iw~~~~~--~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
+...||++.+. + ....+.+.+|++.+.|+.|.+|+ .|++++.|.+..+||+++++.+..|.. |.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~G----------H~ 186 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHG----------HT 186 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecC----------Cc
Confidence 99999999854 2 23345689999999999999976 479999999999999999999988875 67
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE- 282 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~- 282 (492)
+.|.+++++|.+++.+++|+-|+..++||+|.+... ..+.+|...|+++.|.|+|.-+++|+++
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~---------------qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV---------------QTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCccee---------------EeecccccccceEEEccCCCeeeecCCCc
Confidence 789999999955899999999999999999998633 3456789999999999999999999965
Q ss_pred cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee
Q 011160 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
+.++||++... .+..|........|++++| |..|++|++|.
T Consensus 252 tcRlyDlRaD~--------------------------------------~~a~ys~~~~~~gitSv~F-S~SGRlLfagy 292 (343)
T KOG0286|consen 252 TCRLYDLRADQ--------------------------------------ELAVYSHDSIICGITSVAF-SKSGRLLFAGY 292 (343)
T ss_pred eeEEEeecCCc--------------------------------------EEeeeccCcccCCceeEEE-cccccEEEeee
Confidence 89999999743 3344444333445899999 99999999999
Q ss_pred ccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
.|.++.+||.-.++.+..|.+|.+.|.++..+|||..++||+.|.+++||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999995
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-45 Score=287.18 Aligned_cols=282 Identities=16% Similarity=0.261 Sum_probs=247.0
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCce
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v 153 (492)
-+|+|+|.|-+||+|...+|.+..++ ....+.|+.+...| +++.|++++. ..|++||+.++...+...+.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 57999999999999999999999998 45667899999999 9999998875 58999999998887777799999999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEec
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~ 233 (492)
+.+.|..+| +.+++|+.||+++|||++...+...+. +..+|+++..+|. ...|++|..+|.|++||+
T Consensus 87 taVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-----------~~spVn~vvlhpn-QteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 87 TAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------HNSPVNTVVLHPN-QTELISGDQSGNIRVWDL 153 (311)
T ss_pred EEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-----------CCCCcceEEecCC-cceEEeecCCCcEEEEEc
Confidence 999999999 699999999999999999977766665 6678999999997 678999999999999999
Q ss_pred ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCcccccccc
Q 011160 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (492)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (492)
.... |...+.......|.+++..|+|++|+++. .|+.++|++-+......
T Consensus 154 ~~~~--------------c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~--------------- 204 (311)
T KOG0315|consen 154 GENS--------------CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE--------------- 204 (311)
T ss_pred cCCc--------------cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc---------------
Confidence 8864 23334444567899999999999999888 67899999987433332
Q ss_pred CCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC-eeeEEEecCCceeEEE
Q 011160 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCI 391 (492)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~ 391 (492)
..++..++.|... +..+.+ ||++++||+++.|.+++||++.+. +....+.+|...+..+
T Consensus 205 -----------------l~P~~k~~ah~~~--il~C~l-SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc 264 (311)
T KOG0315|consen 205 -----------------LEPVHKFQAHNGH--ILRCLL-SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC 264 (311)
T ss_pred -----------------ceEhhheecccce--EEEEEE-CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee
Confidence 4567778999886 888888 999999999999999999999888 6667889999999999
Q ss_pred eecCCCCeEEEeeCCCCEEEeccCCCCCCc
Q 011160 392 EPHPHSTVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 392 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
+||.||+||++++.|+.+++|++..++...
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceee
Confidence 999999999999999999999999987544
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-46 Score=333.61 Aligned_cols=355 Identities=16% Similarity=0.179 Sum_probs=287.1
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCC--CEEEEecCC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG--DILISGSDD 82 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d 82 (492)
.|.|.+.++++|+.||.|+|||+..+.+. +.|+||.+.|.++.|+|+- ..|++|..|
T Consensus 112 a~~~~g~LlAtggaD~~v~VWdi~~~~~t---------------------h~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 112 AFDPTGTLLATGGADGRVKVWDIKNGYCT---------------------HSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred EEcCCCceEEeccccceEEEEEeeCCEEE---------------------EEecCCCceEEEEEeCCccchhheeecCCC
Confidence 46788999999999999999999987776 8899999999999999975 458999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee---------------------
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--------------------- 141 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--------------------- 141 (492)
+++++||+.+..........|.+.|++++|++ ++..++++++|..+.+||+.+.+..
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~ 248 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGG 248 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCC
Confidence 99999999966652333378999999999999 8888889999999999988422110
Q ss_pred --------------------------------------------------------------------------------
Q 011160 142 -------------------------------------------------------------------------------- 141 (492)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (492)
T Consensus 249 ~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D 328 (775)
T KOG0319|consen 249 KGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD 328 (775)
T ss_pred cceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence
Q ss_pred ----------------------------eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCC
Q 011160 142 ----------------------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP 193 (492)
Q Consensus 142 ----------------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 193 (492)
....+.+|+..|.++....+| .+|++|+.|.++++|.++.+....... ..
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~-a~ 406 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCV-AQ 406 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhh-hh
Confidence 001234588888888866666 589999999999999885544322111 00
Q ss_pred CCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC
Q 011160 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (492)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (492)
..+ |...|.+++++.-+..+|++++.|+++++|++...+.... + ..+........|...|++++.+|+.
T Consensus 407 ---~~g--H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-----~-~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 407 ---ANG--HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-----P-IVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred ---hcc--cccccceeeecccCccEEEEecCCceEEEecCCCcccccc-----c-ceehhhHHHHhhcccccceEecCCC
Confidence 012 6668999999887778999999999999999987321111 1 0111122445689999999999999
Q ss_pred CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeec
Q 011160 274 ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (492)
Q Consensus 274 ~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 352 (492)
++||+|+ |.+.++|++.. .....++.||... |.++.| +
T Consensus 476 kLiAT~SqDktaKiW~le~--------------------------------------~~l~~vLsGH~RG--vw~V~F-s 514 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQ--------------------------------------LRLLGVLSGHTRG--VWCVSF-S 514 (775)
T ss_pred ceEEecccccceeeecccC--------------------------------------ceEEEEeeCCccc--eEEEEe-c
Confidence 9999999 55899999985 5678899999998 999999 9
Q ss_pred CCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcccCcccccccc
Q 011160 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQFKPK 432 (492)
Q Consensus 353 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 432 (492)
|..+.+|++|.|++|+||.+.+..++++|.||...|..+.|-.+++.|+|++.||.|++|++.++++......
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~------- 587 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA------- 587 (775)
T ss_pred cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999988764333
Q ss_pred cccccccccCc
Q 011160 433 ATRWMHHVLSP 443 (492)
Q Consensus 433 ~~~~~~~~~~~ 443 (492)
|.+++++++.+
T Consensus 588 H~DrvWaL~~~ 598 (775)
T KOG0319|consen 588 HNDRVWALSVS 598 (775)
T ss_pred ccceeEEEeec
Confidence 45566666643
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-43 Score=301.72 Aligned_cols=364 Identities=15% Similarity=0.259 Sum_probs=281.0
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhh------------------------------------------------
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTR------------------------------------------------ 35 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~------------------------------------------------ 35 (492)
|.|+|.|-++|+|...|.|||||......+.+
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~ 144 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT 144 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee
Confidence 56888999999999999999998764222222
Q ss_pred --------------hhhhcccccccceeee------eeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 011160 36 --------------NFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV 95 (492)
Q Consensus 36 --------------~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 95 (492)
++.+++.+++|..+.+ +...+++.|..-|+|+.|+|||.++||++.||+|.+||-.+|+.
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 2222566666665554 56667788999999999999999999999999999999999999
Q ss_pred eeeec--cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee------------------------------
Q 011160 96 KLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET------------------------------ 143 (492)
Q Consensus 96 ~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~------------------------------ 143 (492)
+..+. .+|.+.|++++|+| |++.+++++.|.+++|||+.+.+.+..
T Consensus 225 vg~l~~~~aHkGsIfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred EEEecCCCCccccEEEEEECC--CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 88883 37999999999999 999999999999999999987654321
Q ss_pred -----------EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc
Q 011160 144 -----------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (492)
Q Consensus 144 -----------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (492)
..+.+|...|+++..+|++ ..|++|+.||.|.-|+..++..-.... ..|...|.+++-+
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g---------~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAG---------KGHTNQIKGMAAS 372 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCcccccccc---------ccccceEEEEeec
Confidence 2235799999999999999 689999999999999999887654431 1166789999988
Q ss_pred CCCCceEEEecCCCeEEEEecccccccCCC--CCCCCccccCCC------------C--cCC--------CcccceEEEE
Q 011160 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGST--DFGQPADYFCPP------------N--LIG--------DEQVGITGLA 268 (492)
Q Consensus 213 p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~--~~~~~~~~~~~~------------~--~~~--------~~~~~i~~~~ 268 (492)
.. ..+++.+.|.++++.++......... .++......+.. . ++. .-.....+++
T Consensus 373 ~~--~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA 450 (603)
T KOG0318|consen 373 ES--GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA 450 (603)
T ss_pred CC--CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence 64 36778889999999988655433321 111110000000 0 000 1123457888
Q ss_pred EcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeee
Q 011160 269 FSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG 347 (492)
Q Consensus 269 ~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 347 (492)
++|++..++.|+ |+++++|.+..... .....+..|... ++.
T Consensus 451 v~~~~~~vaVGG~Dgkvhvysl~g~~l------------------------------------~ee~~~~~h~a~--iT~ 492 (603)
T KOG0318|consen 451 VSPDGSEVAVGGQDGKVHVYSLSGDEL------------------------------------KEEAKLLEHRAA--ITD 492 (603)
T ss_pred EcCCCCEEEEecccceEEEEEecCCcc------------------------------------cceeeeecccCC--ceE
Confidence 999999988888 56899998876421 223345567776 899
Q ss_pred EEeecCCCcEEEEeeccCeEEEEecCCCeee-EEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 348 VNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 348 ~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
++| |||+.|||+|...+.|.+||+.+.+.. ..+.-|.+.|++|+|+|+..++|||+.|.+|.||+++.....
T Consensus 493 vay-Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 493 VAY-SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEE-CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 999 999999999999999999999988764 345569999999999999999999999999999999875443
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-43 Score=274.93 Aligned_cols=296 Identities=17% Similarity=0.250 Sum_probs=252.5
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~ 90 (492)
-+||+++-|.+||+|...+|.+. ++++...+.|+.+...|+++.||+++. ..||+||+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~---------------------rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICS---------------------RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEE---------------------EEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 46999999999999999999987 777767789999999999999999987 57999999
Q ss_pred CCCce--eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEE
Q 011160 91 KTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (492)
Q Consensus 91 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 168 (492)
.++.. +.++ .+|+..|+++.|.. +|+++++|+.||+++|||++...+.. ...|..+|+++..+|+.. -|++
T Consensus 69 ~S~np~Pv~t~-e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlhpnQt-eLis 141 (311)
T KOG0315|consen 69 NSNNPNPVATF-EGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLHPNQT-ELIS 141 (311)
T ss_pred cCCCCCceeEE-eccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccch---hccCCCCcceEEecCCcc-eEEe
Confidence 88764 5666 89999999999999 99999999999999999999855443 455779999999999984 6899
Q ss_pred EcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCc
Q 011160 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (492)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 248 (492)
|..+|.|++||+....+...+... ....|.++...|+ +.+++.+...|+.++|++-+.+..
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe---------~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~--------- 202 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPE---------DDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTA--------- 202 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCC---------CCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCcc---------
Confidence 999999999999988665444321 3347899999998 789999999999999999875422
Q ss_pred cccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC
Q 011160 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (492)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (492)
..+.|...+..|+..+..+.+||++++|++++ +.+++||+.++-
T Consensus 203 s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~----------------------------------- 247 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF----------------------------------- 247 (311)
T ss_pred ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-----------------------------------
Confidence 22335556777899999999999999999999 558999999873
Q ss_pred ccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeec
Q 011160 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (492)
Q Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 394 (492)
.+....+++|... +..++| |.||+||++|+.|+.+++|++..++.++.+.+|.....+++..
T Consensus 248 --~kle~~l~gh~rW--vWdc~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 --FKLELVLTGHQRW--VWDCAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred --eeeEEEeecCCce--EEeeee-ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 2455778888876 899998 9999999999999999999999999999999998877777653
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.1e-43 Score=279.86 Aligned_cols=295 Identities=20% Similarity=0.358 Sum_probs=256.6
Q ss_pred eeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEE
Q 011160 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (492)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 132 (492)
+...+.+|++.|+.+.|+|+|.+||||+.|..|.+|++.....-...+++|.+.|..+.|.+ +++.|++++.|.+|+.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEecCCceEEE
Confidence 34567899999999999999999999999999999997654444444589999999999999 9999999999999999
Q ss_pred EecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc
Q 011160 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (492)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (492)
||+++++.+.. +..|...|+.+.-+.-|+.++.+++.|+++++||+++...++.+. ...+++++.|.
T Consensus 117 wD~~tG~~~rk--~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-----------~kyqltAv~f~ 183 (338)
T KOG0265|consen 117 WDAETGKRIRK--HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-----------NKYQLTAVGFK 183 (338)
T ss_pred Eecccceeeeh--hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-----------cceeEEEEEec
Confidence 99999998876 889999999999777788888999999999999999999888875 44478999999
Q ss_pred CCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCC
Q 011160 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 213 p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (492)
.+ +..+.+|+-|+.|++||++.+. ......+|...|+.+..+|+|.++.+-+ +.++++||++.
T Consensus 184 d~-s~qv~sggIdn~ikvWd~r~~d---------------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 184 DT-SDQVISGGIDNDIKVWDLRKND---------------GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred cc-ccceeeccccCceeeeccccCc---------------ceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 87 7889999999999999998875 3456778999999999999999999988 77999999975
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccccee--eeeEEeecCCCcEEEEeeccCeEEE
Q 011160 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT--VKGVNFFGPKCEYVVSGSDCGRIFI 369 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~s~~g~~l~sg~~dg~i~i 369 (492)
-... ..++..+.+|..... ...++| +|++..+.+|+.|..+++
T Consensus 248 ~~p~----------------------------------~R~v~if~g~~hnfeknlL~csw-sp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 248 FAPS----------------------------------QRCVKIFQGHIHNFEKNLLKCSW-SPNGTKITAGSADRFVYV 292 (338)
T ss_pred cCCC----------------------------------CceEEEeecchhhhhhhcceeec-cCCCCccccccccceEEE
Confidence 2111 345677777654432 455676 999999999999999999
Q ss_pred EecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
||..+...+..+.+|.+.|++++|+|...+|.+++.|++|++=.
T Consensus 293 wd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 293 WDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99988899999999999999999999999999999999998743
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-42 Score=271.81 Aligned_cols=292 Identities=14% Similarity=0.217 Sum_probs=240.3
Q ss_pred eeeeEeecCccceEEEEEEcCC-CCEEEEecCCCeEEEEECCC-----CceeeeeccCcCcceEEEEecCCCCCceEEee
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT-----ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 124 (492)
+.+..++++|++.|+.++..+. .+.|++++.|.++.+|++.. |..++.+ .||...|..+..++ ++++.+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~--dg~~alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSS--DGNFALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEcc--CCceEEec
Confidence 3456789999999999999886 57899999999999998754 4556666 89999999999999 99999999
Q ss_pred cCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeec
Q 011160 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (492)
Q Consensus 125 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
+.|+++++||+.+++.... +.+|...|.+++|+|++ ..+++|+.|.+|++|+............ .+..
T Consensus 82 swD~~lrlWDl~~g~~t~~--f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~---------~~~~ 149 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRR--FVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHED---------SHRE 149 (315)
T ss_pred cccceEEEEEecCCcEEEE--EEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecC---------CCcC
Confidence 9999999999999865544 99999999999999999 5789999999999999876543332221 0245
Q ss_pred ceEEEEEcCCC-CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC
Q 011160 205 NLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (492)
Q Consensus 205 ~v~~~~~~p~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~ 282 (492)
-|+|+.|+|.. .-+|++++.|++|++||+++.++ .....+|...++.+++||||.++++|+ ++
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---------------hhccccccccEEEEEECCCCCEEecCCCCc
Confidence 79999999973 45899999999999999999774 344566899999999999999999999 66
Q ss_pred cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee
Q 011160 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
.+.+||++.++. +..+. |.. .|.+++| +|+.-+|+.+.
T Consensus 215 ~~~LwdL~~~k~--------------------------------------lysl~-a~~--~v~sl~f-spnrywL~~at 252 (315)
T KOG0279|consen 215 EAMLWDLNEGKN--------------------------------------LYSLE-AFD--IVNSLCF-SPNRYWLCAAT 252 (315)
T ss_pred eEEEEEccCCce--------------------------------------eEecc-CCC--eEeeEEe-cCCceeEeecc
Confidence 899999988532 22232 222 3899999 99977777665
Q ss_pred ccCeEEEEecCCCeeeEEEec----C-----CceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 363 DCGRIFIWKKKGGELIRVIEA----D-----RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
+..|+|||+.++.++..++. . .....+++|++||..|++|-.|+.|++|.+.
T Consensus 253 -~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 -ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 45599999999988876642 2 2236789999999999999999999999875
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-41 Score=268.95 Aligned_cols=287 Identities=18% Similarity=0.219 Sum_probs=234.4
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
.+...++++++|.++.+|++..-... .-.+++.|.||...|..++.++||++.++++.|+++++
T Consensus 26 ~~~~~l~sasrDk~ii~W~L~~dd~~----------------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 26 KNSDILVSASRDKTIIVWKLTSDDIK----------------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred CCCceEEEcccceEEEEEEeccCccc----------------cCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence 34678999999999999998743211 22455889999999999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC-CcEE
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVF 166 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l 166 (492)
||+.+++..+.| .+|...|.+++|+| +.+.+++|+.|.+|++|++...... ...-..+.+.|+|+.|+|+. ..+|
T Consensus 90 WDl~~g~~t~~f-~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 90 WDLATGESTRRF-VGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred EEecCCcEEEEE-EecCCceEEEEecC--CCceeecCCCcceeeeeeecccEEE-EEecCCCcCcEEEEEEcCCCCCcEE
Confidence 999999888888 79999999999999 9999999999999999998664433 32223347899999999983 2489
Q ss_pred EEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCC
Q 011160 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (492)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 246 (492)
++++.|++|++||+++-+....+.. |...++.++++|| |.++++|+.||.+.+||++.++....
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~~g----------h~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lys----- 229 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTFIG----------HSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYS----- 229 (315)
T ss_pred EEccCCceEEEEccCCcchhhcccc----------ccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEe-----
Confidence 9999999999999999887776654 5668999999999 78999999999999999998874322
Q ss_pred CccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC
Q 011160 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (492)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (492)
..+...|.+++|+|+.-+|+.+.+..|+|||+.++.....+......
T Consensus 230 -----------l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g---------------------- 276 (315)
T KOG0279|consen 230 -----------LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIG---------------------- 276 (315)
T ss_pred -----------ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccc----------------------
Confidence 23577899999999999999999999999999987554443211100
Q ss_pred CccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
. ..........+++| +++|+.|++|-.|+.|++|.+.
T Consensus 277 --------~-s~~~~~~~clslaw-s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 277 --------P-SSKAGDPICLSLAW-SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred --------c-ccccCCcEEEEEEE-cCCCcEEEeeecCCcEEEEEee
Confidence 0 00111223678888 9999999999999999999874
No 13
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.6e-43 Score=310.96 Aligned_cols=403 Identities=17% Similarity=0.222 Sum_probs=318.2
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCe
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (492)
+.+++..+||+|..||.|+||+..++... .++.||+..|+++.|...|..|++||.|+.
T Consensus 72 ~~~~d~l~lAVGYaDGsVqif~~~s~~~~---------------------~tfngHK~AVt~l~fd~~G~rlaSGskDt~ 130 (888)
T KOG0306|consen 72 RSSDDILLLAVGYADGSVQIFSLESEEIL---------------------ITFNGHKAAVTTLKFDKIGTRLASGSKDTD 130 (888)
T ss_pred eccCCcceEEEEecCceEEeeccCCCcee---------------------eeecccccceEEEEEcccCceEeecCCCcc
Confidence 34578888999999999999999977655 789999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee---------------------
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET--------------------- 143 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--------------------- 143 (492)
|.+||+-...-..++ .||...|+.+-|.. +.+++++.+.|+.|++||+.+..+..+
T Consensus 131 IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~ 207 (888)
T KOG0306|consen 131 IIVWDLVGEEGLFRL-RGHKDSITQALFLN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTA 207 (888)
T ss_pred EEEEEeccceeeEEe-ecchHHHhHHhccC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEE
Confidence 999999877777777 79999999888887 788888888899999998866544200
Q ss_pred --------------------------------------------------------------------------------
Q 011160 144 -------------------------------------------------------------------------------- 143 (492)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (492)
T Consensus 208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~ 287 (888)
T KOG0306|consen 208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL 287 (888)
T ss_pred ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------------------E
Q 011160 144 -------------------------------------------------------------------------------K 144 (492)
Q Consensus 144 -------------------------------------------------------------------------------~ 144 (492)
.
T Consensus 288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i 367 (888)
T KOG0306|consen 288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI 367 (888)
T ss_pred HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence 1
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (492)
.+.+|...|.+++++.+. .+ +..+..+.+++|+..+.+++..+.+ ..+.+..|-|. .+++++|..
T Consensus 368 ~~~GHR~dVRsl~vS~d~-~~-~~Sga~~SikiWn~~t~kciRTi~~------------~y~l~~~Fvpg-d~~Iv~G~k 432 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDS-IL-LASGAGESIKIWNRDTLKCIRTITC------------GYILASKFVPG-DRYIVLGTK 432 (888)
T ss_pred eeccchhheeEEEeecCc-ee-eeecCCCcEEEEEccCcceeEEecc------------ccEEEEEecCC-CceEEEecc
Confidence 122477788999999886 34 4445568999999999999998864 26788999995 789999999
Q ss_pred CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCC-----CCCC
Q 011160 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG-----PNPP 298 (492)
Q Consensus 225 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~-----~~~~ 298 (492)
.|.+.+||+....+. .....|.+.|++++.+|+++.+++++ |.+|++|+..-... ...+
T Consensus 433 ~Gel~vfdlaS~~l~---------------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 433 NGELQVFDLASASLV---------------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred CCceEEEEeehhhhh---------------hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 999999999887643 33456899999999999999999999 56899999764222 0000
Q ss_pred C-----CCCCCccccccccCCCCCCCCCCCCCCCcc------ccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeE
Q 011160 299 P-----SSPVSTRSEASEMGSDHTSAASPSTANTDV------RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (492)
Q Consensus 299 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i 367 (492)
. ...-.-...+..++|+++.++....+.+.+ .+....+.||.-+ |.++.. |||+++++|||.|.+|
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP--V~smDI-S~DSklivTgSADKnV 574 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNV 574 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc--eeEEec-cCCcCeEEeccCCCce
Confidence 0 001112234567899999999887776644 3445567799987 999998 9999999999999999
Q ss_pred EEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC-CcccCcccccccc---cccccccccCc
Q 011160 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQFKPK---ATRWMHHVLSP 443 (492)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~ 443 (492)
+||-+.-|.|.+.+-+|...|.++.|-|...++.++|.|+.|+-||-+.-+. ..+.++...+... +.|. +.++.+
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~-~vvs~s 653 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS-FVVSSS 653 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCC-eEEecc
Confidence 9999999999999999999999999999999999999999999999876543 4455555444433 2332 345666
Q ss_pred hhhHHHHhhhhhccCCCCcccc
Q 011160 444 EDLMMQLFSLQRRRTSPERNDE 465 (492)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~ 465 (492)
.|..+++|...++....+++.|
T Consensus 654 hD~sIRlwE~tde~~~lEeekE 675 (888)
T KOG0306|consen 654 HDKSIRLWERTDEILILEEEKE 675 (888)
T ss_pred CCceeEeeeccCcceeeehhhh
Confidence 7788888876666555454433
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-41 Score=287.61 Aligned_cols=333 Identities=19% Similarity=0.289 Sum_probs=264.5
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec---CccceEEEEEEcCCCCEEEE
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD---KHRGCVNTVSFNTDGDILIS 78 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s 78 (492)
.++-|+|||.++||.+.||.|.|||-.+|+.+ ..|. +|++.|.+++|+||++.++|
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDGktge~v---------------------g~l~~~~aHkGsIfalsWsPDs~~~~T 252 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV---------------------GELEDSDAHKGSIFALSWSPDSTQFLT 252 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcCCCccEE---------------------EEecCCCCccccEEEEEECCCCceEEE
Confidence 46779999999999999999999999999987 4555 89999999999999999999
Q ss_pred ecCCCeEEEEECCCCceeeee------------------------------------------ccCcCcceEEEEecCCC
Q 011160 79 GSDDRRVILWDWKTERVKLSF------------------------------------------HSGHNDNVFQAKIMPFT 116 (492)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~------------------------------------------~~~~~~~v~~~~~~~~~ 116 (492)
++.|.+++|||+.+.+++.++ ..+|...|+++..+|
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-- 330 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-- 330 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC--
Confidence 999999999999875443221 368999999999999
Q ss_pred CCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccce----eecC
Q 011160 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL----FTCR 192 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~ 192 (492)
++++|++|+.||.|.-|+..++..-.. .-..|...|.+++.+..+ .+++++.|.++++.++........ +...
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~~-~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDRL-AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred CCCEEEeeccCceEEEEecCCcccccc-ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 999999999999999999987765432 126799999999998866 378999999999998753322111 0000
Q ss_pred CC----------------------CCCCc---ceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCC
Q 011160 193 PI----------------------DDRRN---YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 193 ~~----------------------~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 247 (492)
+. ..... ..-.-...+++++|+ +..++.|+.|+.|++|.+....+.
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l~-------- 478 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDELK-------- 478 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCccc--------
Confidence 00 00000 001234578899998 789999999999999999876532
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (492)
.......|..+|+++++||++.+||++. .+.+.+||+.+..
T Consensus 479 -----ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~--------------------------------- 520 (603)
T KOG0318|consen 479 -----EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE--------------------------------- 520 (603)
T ss_pred -----ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc---------------------------------
Confidence 2234455789999999999999999999 6689999998752
Q ss_pred CccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCee-eEEEecCCceeEEEeecCCCCeEEEeeC
Q 011160 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL-IRVIEADRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
.....+.-|... |.+++| +|+.+++|+|+-|-+|.||+++.... +....+|...|+.+.|- +...+++.|.
T Consensus 521 ----~~~~~w~FHtak--I~~~aW-sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~ 592 (603)
T KOG0318|consen 521 ----VKTNRWAFHTAK--INCVAW-SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQ 592 (603)
T ss_pred ----eecceeeeeeee--EEEEEe-CCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccC
Confidence 223344446665 999999 99999999999999999999976543 44456798889999997 4567889999
Q ss_pred CCCEEEeccC
Q 011160 406 ESDIKILTPN 415 (492)
Q Consensus 406 dg~i~iw~~~ 415 (492)
|..|++|++.
T Consensus 593 Da~iK~W~v~ 602 (603)
T KOG0318|consen 593 DANIKVWNVT 602 (603)
T ss_pred cceeEEeccc
Confidence 9999999974
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.2e-41 Score=277.60 Aligned_cols=324 Identities=15% Similarity=0.199 Sum_probs=271.5
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCe
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (492)
+.+|+.++++||+.|-.-.||+..+|..+ ..+.+|+..|+++.|+.+|.+||||+-+|.
T Consensus 71 sl~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------~eltgHKDSVt~~~FshdgtlLATGdmsG~ 129 (399)
T KOG0296|consen 71 SLHPNNNLVATGGGDDLAFLWDISTGEFA---------------------GELTGHKDSVTCCSFSHDGTLLATGDMSGK 129 (399)
T ss_pred EeCCCCceEEecCCCceEEEEEccCCcce---------------------eEecCCCCceEEEEEccCceEEEecCCCcc
Confidence 45679999999999999999999999977 789999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCc
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
|+||...++.....+. ..-..|.=+.|+| .+..|+.|+.||.+.+|.+.++.... .+.+|..++++=.|.|+| +
T Consensus 130 v~v~~~stg~~~~~~~-~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~k--v~~Gh~~~ct~G~f~pdG-K 203 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLD-QEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCK--VMSGHNSPCTCGEFIPDG-K 203 (399)
T ss_pred EEEEEcccCceEEEee-cccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceee--EecCCCCCcccccccCCC-c
Confidence 9999999999888773 4556788899999 99999999999999999998864444 489999999999999999 5
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
.++++..||+|++|++.+++++..+.... .....++.++.. +..++.|+.++.+++....+++.+....-
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e---------~~~~~~~~~~~~-~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQPLHKITQAE---------GLELPCISLNLA-GSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred eEEEEecCceEEEEecCCCceeEEecccc---------cCcCCccccccc-cceeEeccCCccEEEEccccceEEEecCC
Confidence 78999999999999999998877665322 224577888876 78899999999999998888876543221
Q ss_pred CCCccccCCCCcCCCcccceEEEEEcC---CCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 245 GQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
....+...+...+.++.+.| .-.+.|+|+ +++|.|||+..
T Consensus 274 -------~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~----------------------------- 317 (399)
T KOG0296|consen 274 -------TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA----------------------------- 317 (399)
T ss_pred -------CCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-----------------------------
Confidence 01222333444555555555 446778888 88999999975
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeE
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL 400 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 400 (492)
..++..-.|... |+.+.| -+ ..+|++++.+|.|+.||.++|+++.++.+|...|.+++.+|+.+++
T Consensus 318 ----------~~~R~~c~he~~--V~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 318 ----------STLRHICEHEDG--VTKLKW-LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLV 383 (399)
T ss_pred ----------chhheeccCCCc--eEEEEE-cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEE
Confidence 334555566666 899999 66 6899999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCEEEeccC
Q 011160 401 ASSGIESDIKILTPN 415 (492)
Q Consensus 401 ~s~~~dg~i~iw~~~ 415 (492)
+|+|.|++.+|+.+.
T Consensus 384 vT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 384 VTVSDDNTALVFEVP 398 (399)
T ss_pred EEecCCCeEEEEecC
Confidence 999999999999874
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.8e-43 Score=297.67 Aligned_cols=295 Identities=19% Similarity=0.288 Sum_probs=257.3
Q ss_pred eeeEeecCccceEEEEEEcC-CCCEEEEecCCCeEEEEECCC-CceeeeeccCcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
+....+.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.++.++ .+|..+|..++|++ +|..+++++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~--~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNN--CGTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccc--cCCeeeeeeccee
Confidence 56788999999999999999 889999999999999999876 6777777 89999999999999 9999999999999
Q ss_pred EEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
|++||++++.+..... ....++|+.|+|+++++|++|+.|+.|+.||+++++.++.+.. +-+.|..+
T Consensus 282 lKlwDtETG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------hLg~i~~i 348 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------HLGAILDI 348 (503)
T ss_pred eeeeccccceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------hhhheeee
Confidence 9999999998876522 3367899999999989999999999999999999998887764 55689999
Q ss_pred EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEe
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d 288 (492)
.|-+. +..+++.+.|+.++||+.+..-... .....+.-...++..+|++.++++-+ ++.|.+|.
T Consensus 349 ~F~~~-g~rFissSDdks~riWe~~~~v~ik--------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 349 TFVDE-GRRFISSSDDKSVRIWENRIPVPIK--------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred EEccC-CceEeeeccCccEEEEEcCCCccch--------------hhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 99997 7899999999999999998764321 12223344667899999999999988 66899998
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
+..... ....+.++||.....-..+.| ||||.+|++|+.||.+.
T Consensus 414 ~~~~~r-----------------------------------~nkkK~feGh~vaGys~~v~f-SpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 414 TVPPFR-----------------------------------LNKKKRFEGHSVAGYSCQVDF-SPDGRTLCSGDSDGKVN 457 (503)
T ss_pred cccccc-----------------------------------cCHhhhhcceeccCceeeEEE-cCCCCeEEeecCCccEE
Confidence 654311 445678999998877788998 99999999999999999
Q ss_pred EEecCCCeeeEEEecCCceeEEEeecCCCC-eEEEeeCCCCEEEec
Q 011160 369 IWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILT 413 (492)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~ 413 (492)
+||.++.+++..+++|.+++..+.|+|... .+|+++.||.|++|+
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999764 799999999999996
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-41 Score=269.34 Aligned_cols=278 Identities=21% Similarity=0.278 Sum_probs=239.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
++-++++++++++++.||.+.|||.-|.... +-+.--...|..++|+|.|+++|.|+-|
T Consensus 60 ~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 60 AMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------HAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred eeEecCCcCeEEeeccCCeEEEEEcccccce---------------------eEEecCceeEEEEEECCCCCeEEecCcC
Confidence 3457899999999999999999999876655 3444557899999999999999999999
Q ss_pred CeEEEEECCCC--c---eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEE
Q 011160 83 RRVILWDWKTE--R---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 83 ~~i~iwd~~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~ 157 (492)
+...||++.+. + .+.+.+.+|++.+.++.|.+ ...|+|++.|.+..+||+++++.... +.+|.+.|.+++
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~--f~GH~gDV~sls 193 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQV--FHGHTGDVMSLS 193 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEE--ecCCcccEEEEe
Confidence 99999999855 2 23344589999999999985 66799999999999999999887766 899999999999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
++|..++.|++|+-|+..++||++.+...+.|.. |...|+++.|.|+ +.-|++|+.|++.++||+|..+
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g----------hesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG----------HESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEeecc----------cccccceEEEccC-CCeeeecCCCceeEEEeecCCc
Confidence 9995457999999999999999999999999876 6668999999998 7899999999999999999876
Q ss_pred ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCC
Q 011160 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (492)
.+..+. ......+|++++||..|++|.+|. +.++.+||.-.
T Consensus 263 ~~a~ys-------------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk------------------------- 304 (343)
T KOG0286|consen 263 ELAVYS-------------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK------------------------- 304 (343)
T ss_pred EEeeec-------------cCcccCCceeEEEcccccEEEeeecCCceeEeeccc-------------------------
Confidence 443211 122356899999999999999987 45899999865
Q ss_pred CCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
......+.||.+. |.++.. +|||.-|++|+.|.+++||.
T Consensus 305 -------------~e~vg~L~GHeNR--vScl~~-s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 305 -------------GERVGVLAGHENR--VSCLGV-SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -------------cceEEEeeccCCe--eEEEEE-CCCCcEEEecchhHheeecC
Confidence 4567788999998 899998 99999999999999999994
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=302.79 Aligned_cols=346 Identities=15% Similarity=0.220 Sum_probs=284.9
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhh----------------cccccccce------eeeeeeEeecCccceEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFAL----------------RRRASEDLV------LRLGIYAKLDKHRGCVNTV 67 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~----------------~~~~~~~~~------~~~~~~~~~~~h~~~v~~~ 67 (492)
+.++.|.+.+|.+++||.++++++...... .+....+.. ..+.+.+.+-|..+.|..+
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 568999999999999999999988764433 111111111 1236667778889999999
Q ss_pred EE-cCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe--eeeE
Q 011160 68 SF-NTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETK 144 (492)
Q Consensus 68 ~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~ 144 (492)
+| .|+.++||.++..+.+|+|++.+..+. +..||+..|.++.... +|.+|++|+.|.++++|.+..+.. ....
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~--~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWS--SGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeecc--cCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 98 467799999999999999998877764 5589999999999444 678999999999999999954432 2333
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (492)
...+|...|.+++++..+..+|+++|.|+++++|++...+....... -......+.|...|++++++|. ..++++|+.
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~-~~~~~t~~aHdKdIN~Vaia~n-dkLiAT~Sq 483 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV-LTCRYTERAHDKDINCVAIAPN-DKLIATGSQ 483 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccce-ehhhHHHHhhcccccceEecCC-CceEEeccc
Confidence 46789999999999998888999999999999999987332211000 0000012337778999999997 789999999
Q ss_pred CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCC
Q 011160 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV 303 (492)
Q Consensus 225 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 303 (492)
|.+.+||++.+.++ ...+.+|...|.++.|+|..+.+++++ |.+|+||.+.+
T Consensus 484 DktaKiW~le~~~l---------------~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~------------ 536 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRL---------------LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST------------ 536 (775)
T ss_pred ccceeeecccCceE---------------EEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc------------
Confidence 99999999996653 446778999999999999999999999 56899999998
Q ss_pred CccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEec
Q 011160 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 383 (492)
..++++|.||... |..+.| -.+|+.|++++.||.|++|++++++++.++.+
T Consensus 537 --------------------------fSClkT~eGH~~a--Vlra~F-~~~~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 537 --------------------------FSCLKTFEGHTSA--VLRASF-IRNGKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred --------------------------ceeeeeecCccce--eEeeee-eeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 6789999999987 899998 78899999999999999999999999999999
Q ss_pred CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
|...|++++-+|...+++||+.||.|.+|.=.+.
T Consensus 588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999999999999999966553
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=276.75 Aligned_cols=294 Identities=20% Similarity=0.311 Sum_probs=257.8
Q ss_pred eeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC
Q 011160 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (492)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 128 (492)
..+++.+.+.+|.+.|.|+++.|-.++++||+.|++|+|||+.+|....++ .||...|..+++++ ...++++++.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~--rHpYlFs~gedk 215 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSK--RHPYLFSAGEDK 215 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecc--cCceEEEecCCC
Confidence 345888999999999999999999999999999999999999999998888 89999999999999 899999999999
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
.|+.||+...+.+.. +.+|-..|.|++.+|.- .+|++|+.|.++++||+++...+..+.. |..+|..
T Consensus 216 ~VKCwDLe~nkvIR~--YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~G----------H~~~V~~ 282 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRH--YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSG----------HTNPVAS 282 (460)
T ss_pred eeEEEechhhhhHHH--hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecC----------CCCccee
Confidence 999999998887766 88999999999999988 5899999999999999999998888875 6668999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEe
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (492)
+.+.|.+ -.+++|+.|++|++||++.++.. ....+|...+.+++.+|....+|+++.+.|+-|+
T Consensus 283 V~~~~~d-pqvit~S~D~tvrlWDl~agkt~---------------~tlt~hkksvral~lhP~e~~fASas~dnik~w~ 346 (460)
T KOG0285|consen 283 VMCQPTD-PQVITGSHDSTVRLWDLRAGKTM---------------ITLTHHKKSVRALCLHPKENLFASASPDNIKQWK 346 (460)
T ss_pred EEeecCC-CceEEecCCceEEEeeeccCcee---------------EeeecccceeeEEecCCchhhhhccCCccceecc
Confidence 9999874 47899999999999999998732 3455688999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
+..+ ..+..+.+|... ++++.. ..| .++++|+++|.+.
T Consensus 347 ~p~g--------------------------------------~f~~nlsgh~~i--intl~~-nsD-~v~~~G~dng~~~ 384 (460)
T KOG0285|consen 347 LPEG--------------------------------------EFLQNLSGHNAI--INTLSV-NSD-GVLVSGGDNGSIM 384 (460)
T ss_pred CCcc--------------------------------------chhhccccccce--eeeeee-ccC-ceEEEcCCceEEE
Confidence 9874 455668888876 788876 555 4889999999999
Q ss_pred EEecCCCeeeEEEec--------CCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 369 IWKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 369 iwd~~~~~~~~~~~~--------h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+||.++|-..+.+.. ....|.+.+|...|..|++|..|++|++|.-+.
T Consensus 385 fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 385 FWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 999999866554421 124589999999999999999999999997654
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-40 Score=292.99 Aligned_cols=324 Identities=19% Similarity=0.275 Sum_probs=277.4
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC-
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD- 82 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d- 82 (492)
+.|++...+||+|-..|...|+.+..-.++ +.+.--..+|..++|+..|.+||.|+..
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~li---------------------h~LSis~~~I~t~~~N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLI---------------------HSLSISDQKILTVSFNSTGDWIAFGCSKL 329 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEE---------------------EEeecccceeeEEEecccCCEEEEcCCcc
Confidence 568888899999999999999999855555 6666667899999999999999998765
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
|++-||++++...+... .+|...+++++++| ||+++++|+.||.|+|||..++-+..+ +..|+..|+.+.|+..+
T Consensus 330 gQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSp--Dgq~iaTG~eDgKVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~g 404 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQ-QGHSDRITSLAYSP--DGQLIATGAEDGKVKVWNTQSGFCFVT--FTEHTSGVTAVQFTARG 404 (893)
T ss_pred ceEEEEEeeccceeeec-cccccceeeEEECC--CCcEEEeccCCCcEEEEeccCceEEEE--eccCCCceEEEEEEecC
Confidence 79999999988877776 79999999999999 999999999999999999988888766 89999999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC-eEEEEecccccccCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRLYDIRKYKWDGS 241 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~i~d~~~~~~~~~ 241 (492)
+.+++++-||+|+.||+........+..+ ...+..|++..|. |.++.+|+.|. .|.+|++.++++
T Consensus 405 -~~llssSLDGtVRAwDlkRYrNfRTft~P---------~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGql--- 470 (893)
T KOG0291|consen 405 -NVLLSSSLDGTVRAWDLKRYRNFRTFTSP---------EPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQL--- 470 (893)
T ss_pred -CEEEEeecCCeEEeeeecccceeeeecCC---------CceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCee---
Confidence 68999999999999999999988888765 3346789999998 67888888776 499999999984
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
..++.+|.++|.+++|+|.+..|++++ |.+|++|++-..
T Consensus 471 ------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s---------------------------- 510 (893)
T KOG0291|consen 471 ------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS---------------------------- 510 (893)
T ss_pred ------------eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc----------------------------
Confidence 456788999999999999999999999 668999998653
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEec-----------------
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA----------------- 383 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~----------------- 383 (492)
.....++..... +..++| +|+|+-||++.-||.|.+||.+.+..+..+.+
T Consensus 511 ---------~~~vEtl~i~sd---vl~vsf-rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~ 577 (893)
T KOG0291|consen 511 ---------SGTVETLEIRSD---VLAVSF-RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAE 577 (893)
T ss_pred ---------CceeeeEeeccc---eeEEEE-cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehh
Confidence 223344443333 789998 99999999999999999999987766544332
Q ss_pred ---CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 384 ---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 384 ---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
.....+.+++++||.+|++||....|++|++.++-+.
T Consensus 578 ~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 578 NSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred hcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 1235899999999999999999999999999987554
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-41 Score=278.58 Aligned_cols=298 Identities=19% Similarity=0.349 Sum_probs=265.0
Q ss_pred cccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEe
Q 011160 44 SEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT 123 (492)
Q Consensus 44 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 123 (492)
....+.|..+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+ ++|+..+..++|.. .|.+|++
T Consensus 91 ~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a--~Gk~l~t 167 (406)
T KOG0295|consen 91 PALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDA--SGKYLAT 167 (406)
T ss_pred hhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEec--CccEEEe
Confidence 34456677888899999999999999999999999999999999999999996665 89999999999999 9999999
Q ss_pred ecCCCcEEEEecccC-CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCccee
Q 011160 124 CAADGQVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (492)
++.|=.+++||..+. +++. .+.+|...|.+++|-|.| ..+++++.|.+|+.|++.++.++..+.. +
T Consensus 168 cSsDl~~~LWd~~~~~~c~k--s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~----------h 234 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIK--SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPG----------H 234 (406)
T ss_pred cCCccchhheeHHHHHHHHH--HhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccC----------c
Confidence 999998999999773 3333 377899999999999999 5899999999999999999999999875 4
Q ss_pred ecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC----------
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---------- 272 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------- 272 (492)
..-|..+..+.| |.++++++.|.++++|-+.+++. ......|+.+|.+++|-|.
T Consensus 235 ~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~---------------k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 235 SEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQC---------------KAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred hHhEEEEEecCC-eeEEEecCCCceEEEEEeccchh---------------hhhhhccccceEEEEecccccCcchhhcc
Confidence 447888999988 79999999999999999998742 2334557888999988763
Q ss_pred -----CCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeee
Q 011160 273 -----SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (492)
Q Consensus 273 -----~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 346 (492)
++++.+++ |++|++||+.+ ..++.++.+|.+. |.
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~t--------------------------------------g~cL~tL~ghdnw--Vr 338 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVST--------------------------------------GMCLFTLVGHDNW--VR 338 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccC--------------------------------------CeEEEEEecccce--ee
Confidence 24888888 66899999998 4678899999997 99
Q ss_pred eEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 347 ~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
+++| +|.|+||+++.+|+++++||++++++...+..|..-|+++.|+.+..+++||+-|.++++|..
T Consensus 339 ~~af-~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAF-SPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEE-cCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999 999999999999999999999999999999999999999999999999999999999999964
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-40 Score=280.36 Aligned_cols=322 Identities=17% Similarity=0.247 Sum_probs=265.7
Q ss_pred CCCCCCc-eEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEee--cC----ccceEEEEEEcCCCCEEE
Q 011160 5 SNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL--DK----HRGCVNTVSFNTDGDILI 77 (492)
Q Consensus 5 ~~~~~~~-~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----h~~~v~~~~~s~~~~~l~ 77 (492)
.++|-.. ++++|+.|.+.|+|++....-.. ...+.+.+.+ -+ -...|++++|+.+|.+||
T Consensus 185 ~WnP~~~~llasg~~~s~ari~~l~e~~~~~-------------~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 185 AWNPLRDGLLASGSGDSTARIWNLLENSNIG-------------STQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred ecCchhhhhhhccCCccceeeeeehhhcccc-------------chhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3455555 89999999999999987411000 0000000111 11 246799999999999999
Q ss_pred EecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEE
Q 011160 78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~ 157 (492)
+|+.||.++||+.. |..+.++ ..|.++|.++.|+. .|++|++++.|+++.+||..++..... +.-|..+-..+.
T Consensus 252 tG~~~G~~riw~~~-G~l~~tl-~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~--f~~~s~~~lDVd 325 (524)
T KOG0273|consen 252 TGSEDGEARIWNKD-GNLISTL-GQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQ--FEFHSAPALDVD 325 (524)
T ss_pred EeecCcEEEEEecC-chhhhhh-hccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEe--eeeccCCccceE
Confidence 99999999999954 6666666 78999999999999 999999999999999999988876655 667887777889
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
|-.+. -|++++.|+.|+++.+....++..+.. |.+.|+++.|+|. +.+|++++.|++++||......
T Consensus 326 W~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~G----------H~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 326 WQSND--EFATSSTDGCIHVCKVGEDRPVKTFIG----------HHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred EecCc--eEeecCCCceEEEEEecCCCcceeeec----------ccCceEEEEECCC-CceEEEecCCCeeEeeecCCCc
Confidence 98765 489999999999999999988888875 6678999999998 7899999999999999987654
Q ss_pred ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC---------eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccc
Q 011160 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---------LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (492)
. .+-+..|...|..+.|+|.|. .|++++ +.++++||+..
T Consensus 393 ~---------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~---------------- 441 (524)
T KOG0273|consen 393 S---------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES---------------- 441 (524)
T ss_pred c---------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC----------------
Confidence 2 233455788999999999752 455555 77999999987
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCce
Q 011160 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV 387 (492)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 387 (492)
..++.+|..|..+ |.+++| +|+|+|+|+|+.||.|.+|+++++++++.+.+. +.
T Consensus 442 ----------------------gv~i~~f~kH~~p--Vysvaf-S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~ 495 (524)
T KOG0273|consen 442 ----------------------GVPIHTLMKHQEP--VYSVAF-SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GG 495 (524)
T ss_pred ----------------------CceeEeeccCCCc--eEEEEe-cCCCcEEEecCCCCeeEeccccchheeEeecCC-Ce
Confidence 4677889899987 999999 999999999999999999999999999999865 55
Q ss_pred eEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 388 VNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 388 v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
|..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999899999998864
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-41 Score=280.59 Aligned_cols=298 Identities=22% Similarity=0.299 Sum_probs=247.5
Q ss_pred eeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce---eeeeccCcCcceEEEEecCCCCCceEEeecC
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
..+..+.+..|+..|+-+.||++|++|||++.|.+..+|.+..... ..++ .+|..+|..+.|+| |.++|++|+.
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSP--DdryLlaCg~ 289 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSP--DDRYLLACGF 289 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECC--CCCeEEecCc
Confidence 3456678889999999999999999999999999999998765433 4444 79999999999999 9999999999
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
+..+.+||+.++...... -.++...+.+++|.||| ..+++|+.|+.+..||+.... ....+.. ....|
T Consensus 290 ~e~~~lwDv~tgd~~~~y-~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv---------r~~~v 357 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLY-PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-LGNWEGV---------RDPKV 357 (519)
T ss_pred hHheeeccCCcchhhhhc-ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-hhccccc---------cccee
Confidence 999999999998876542 22356889999999999 578999999999999987554 2222211 12358
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (492)
.+++..+| |+++++.+.|..|++|+..+..-.+ ......+|+++..|.+++++.+.- +..++
T Consensus 358 ~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~----------------lise~~~its~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 358 HDLAITYD-GKYVLLVTVDKKIRLYNREARVDRG----------------LISEEQPITSFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred EEEEEcCC-CcEEEEEecccceeeechhhhhhhc----------------cccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence 99999998 6788888899999999987653211 112356899999999999877766 66899
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
+||+.. ...++.+.||...-.+..-||-..+..++|+|++|+
T Consensus 421 LWDl~e--------------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 421 LWDLEE--------------------------------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred Eeecch--------------------------------------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 999986 567888999988877777777344558999999999
Q ss_pred eEEEEecCCCeeeEEEecCCceeEEEeecCCCC-eEEEeeCCCCEEEeccCCC
Q 011160 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA 417 (492)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 417 (492)
.|+||+..+|+++.++.||...|++++|+|... ++||+|.||+|+||.+...
T Consensus 463 kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 463 KVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999999999999765 7999999999999988653
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-42 Score=286.61 Aligned_cols=280 Identities=19% Similarity=0.326 Sum_probs=237.8
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
.+|.+.|+|++|+||+..|.+.||+..+-... ..++.|..+|+++.|++++.++++|+.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE---------------------tilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE---------------------TILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHH---------------------HHhhhhcccceeEEEccCCCEEEEcCC
Confidence 45678899999999999999999998643322 457899999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
+|.|++|+..-. .+..+...|...|.+++|+| +...+++++.||+|+|||....+.... +.+|.-.|.++.|+|.
T Consensus 159 gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 159 GGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHPT 233 (464)
T ss_pred CceEEecccchh-hhHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCCc
Confidence 999999997644 44555456668999999999 999999999999999999987766544 8999999999999998
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
. .++++++.|..|++||.+++.++..+.. |+..|..+.|+|+ +++|++++.|..+++||+++.+
T Consensus 234 k-gLiasgskDnlVKlWDprSg~cl~tlh~----------HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mk---- 297 (464)
T KOG0284|consen 234 K-GLIASGSKDNLVKLWDPRSGSCLATLHG----------HKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMK---- 297 (464)
T ss_pred c-ceeEEccCCceeEeecCCCcchhhhhhh----------ccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhH----
Confidence 8 5899999999999999999999877654 6678999999998 6999999999999999998543
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
T Consensus 298 -------------------------------------------------------------------------------- 297 (464)
T KOG0284|consen 298 -------------------------------------------------------------------------------- 297 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecC-CCcEEEEeeccCeEEEEecCCCeeeEEE-ecCCceeEEEeecCCCCe
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTV 399 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~ 399 (492)
.+..+++|... |+++.| +| ...+|.+|+.||.|..|.+...+++..+ .+|.+.|++|+|+|-|.+
T Consensus 298 ----------El~~~r~Hkkd--v~~~~W-hP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhi 364 (464)
T KOG0284|consen 298 ----------ELFTYRGHKKD--VTSLTW-HPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHI 364 (464)
T ss_pred ----------HHHHhhcchhh--heeecc-ccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccccee
Confidence 23445556554 666766 55 3458889999999999999866666555 479999999999999999
Q ss_pred EEEeeCCCCEEEeccCC
Q 011160 400 LASSGIESDIKILTPNA 416 (492)
Q Consensus 400 l~s~~~dg~i~iw~~~~ 416 (492)
|++|+.|.++++|.-..
T Consensus 365 l~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 365 LATGSNDRTVRFWTRNR 381 (464)
T ss_pred EeecCCCcceeeeccCC
Confidence 99999999999997643
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.1e-39 Score=253.35 Aligned_cols=294 Identities=19% Similarity=0.246 Sum_probs=235.9
Q ss_pred eeeeEeecCccceEEEEEEcCC-CCEEEEecCCCeEEEEECCCC---ceeeeeccCcCcceEEEEecCCCCCceEEeecC
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTE---RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
+..++.+++|.++|..++|+|- |..||||+.|+.|++|+...+ .+...+-.+|+..|.+++|+| .|++|++|+.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEEEeec
Confidence 4567889999999999999998 889999999999999998843 333344467999999999999 9999999999
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
|.++.||.-..+.......+.+|...|.|++|+++| ++|+++++|..|-||.+..+.........+. |...|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~-------HtqDV 153 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQE-------HTQDV 153 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeecc-------ccccc
Confidence 999999998776666666799999999999999999 6999999999999999886554433332222 55679
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FI 284 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i 284 (492)
..+.|+|. ..+|++++.|.+|++|+-.. .. ......+.+|...|.+++|+|.|..|++++++ ++
T Consensus 154 K~V~WHPt-~dlL~S~SYDnTIk~~~~~~ddd-------------W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 154 KHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDD-------------WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred cEEEEcCC-cceeEEeccCCeEEEEeecCCCC-------------eeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 99999997 67999999999999998762 21 11223455677899999999999999999955 89
Q ss_pred EEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc
Q 011160 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (492)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d 364 (492)
+||-..+.. -..|... +..+.| . ...||+++.|
T Consensus 220 ~Iw~~~~~~------------------------------------------~~~~sr~--~Y~v~W-~--~~~IaS~ggD 252 (312)
T KOG0645|consen 220 SIWRLYTDL------------------------------------------SGMHSRA--LYDVPW-D--NGVIASGGGD 252 (312)
T ss_pred EeeeeccCc------------------------------------------chhcccc--eEeeee-c--ccceEeccCC
Confidence 999865321 0112222 677888 4 4589999999
Q ss_pred CeEEEEecCCC------eeeE-EEecCCceeEEEeecCC-CCeEEEeeCCCCEEEeccC
Q 011160 365 GRIFIWKKKGG------ELIR-VIEADRHVVNCIEPHPH-STVLASSGIESDIKILTPN 415 (492)
Q Consensus 365 g~i~iwd~~~~------~~~~-~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 415 (492)
+.|++|.-... +++. .-..|...|++++|.|. ...|++++.||.|++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999986542 1222 23568889999999995 6789999999999999875
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-39 Score=248.67 Aligned_cols=285 Identities=21% Similarity=0.306 Sum_probs=247.0
Q ss_pred eEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
.+.+..|+++|..+.|+-+|+|.++++.|++|++|+...+.++.++ .+|...|..++.+. |...+++|+.|..|.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~--Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSS--DNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccc--cccccccCCCCceEEEE
Confidence 3667899999999999999999999999999999999999999988 89999999999998 99999999999999999
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC--ccceeecCCCCCCCcceeecceEEEEE
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
|+.+++.... +.+|...|+.+.|+.+. .++++|+.|.++++||.++.. +++.+.. ....|.++..
T Consensus 87 DV~TGkv~Rr--~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde----------a~D~V~Si~v 153 (307)
T KOG0316|consen 87 DVNTGKVDRR--FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE----------AKDGVSSIDV 153 (307)
T ss_pred EcccCeeeee--cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh----------hcCceeEEEe
Confidence 9999988876 99999999999999988 699999999999999998764 3444432 3346888888
Q ss_pred cCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecC
Q 011160 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (492)
Q Consensus 212 ~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (492)
. ++.|++|+.||+++.||++.+++... --..+|+++.|+++++...+++ +.++++.|-.
T Consensus 154 ~---~heIvaGS~DGtvRtydiR~G~l~sD-----------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 154 A---EHEIVAGSVDGTVRTYDIRKGTLSSD-----------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred c---ccEEEeeccCCcEEEEEeecceeehh-----------------hcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 6 46899999999999999999874321 1245899999999999877777 7799999998
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
+ .+.+..++||.+...-...++ ......+++|++||.|++|
T Consensus 214 t--------------------------------------GklL~sYkGhkn~eykldc~l-~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 214 T--------------------------------------GKLLKSYKGHKNMEYKLDCCL-NQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred h--------------------------------------hHHHHHhcccccceeeeeeee-cccceeEEeccCCceEEEE
Confidence 8 467888999998877677777 7888899999999999999
Q ss_pred ecCCCeeeEEEecCCce-eEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 371 KKKGGELIRVIEADRHV-VNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 371 d~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
|+.....+..+..|... |.+++++|.-..|+++. ++.+.+|--
T Consensus 255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred EeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 99999999999988877 89999999988777775 456666643
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=283.85 Aligned_cols=344 Identities=18% Similarity=0.253 Sum_probs=278.3
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhh---------hhcccccccceee--e--eeeEeecCccceEEEEEEc
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNF---------ALRRRASEDLVLR--L--GIYAKLDKHRGCVNTVSFN 70 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~---------~~~~~~~~~~~~~--~--~~~~~~~~h~~~v~~~~~s 70 (492)
++|..+..-+.|-+.||.+.+|.....-.-...- .......++-..+ + ....-+......|++.+|+
T Consensus 195 cfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH 274 (893)
T KOG0291|consen 195 CFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH 274 (893)
T ss_pred EEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc
Confidence 4677777889999999999999887321000000 0000001110011 1 1122333445889999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC-CcEEEEecccCCeeeeEEeecC
Q 011160 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGGVETKLLGKH 149 (492)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~~~~~~~ 149 (492)
+....|++|=..|...+|.+.....++.+ .-...+|..++|+. .|++|+.|+.. |.+-||++++...+.. .++|
T Consensus 275 ~~t~~lvvgFssG~f~LyelP~f~lih~L-Sis~~~I~t~~~N~--tGDWiA~g~~klgQLlVweWqsEsYVlK--QQgH 349 (893)
T KOG0291|consen 275 KGTNLLVVGFSSGEFGLYELPDFNLIHSL-SISDQKILTVSFNS--TGDWIAFGCSKLGQLLVWEWQSESYVLK--QQGH 349 (893)
T ss_pred CCceEEEEEecCCeeEEEecCCceEEEEe-ecccceeeEEEecc--cCCEEEEcCCccceEEEEEeeccceeee--cccc
Confidence 99999999999999999999999998887 45567899999998 89999998765 8999999998887766 8899
Q ss_pred CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEE
Q 011160 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (492)
Q Consensus 150 ~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 229 (492)
...+++++++||| +++++|+.||.|++||...+-+..+|.. |...|+.+.|+.. ++.+++.+-||+|+
T Consensus 350 ~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFte----------Hts~Vt~v~f~~~-g~~llssSLDGtVR 417 (893)
T KOG0291|consen 350 SDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTE----------HTSGVTAVQFTAR-GNVLLSSSLDGTVR 417 (893)
T ss_pred ccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEecc----------CCCceEEEEEEec-CCEEEEeecCCeEE
Confidence 9999999999999 6899999999999999999999988876 6678999999997 78999999999999
Q ss_pred EEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC--cEEEEecCCCCCCCCCCCCCCCccc
Q 011160 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRS 307 (492)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (492)
.||+..++.-. .+..+......|++..|.|.++++|+.+ .|++|++.++
T Consensus 418 AwDlkRYrNfR--------------Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG--------------- 468 (893)
T KOG0291|consen 418 AWDLKRYRNFR--------------TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG--------------- 468 (893)
T ss_pred eeeecccceee--------------eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---------------
Confidence 99998876322 2333345678899999999999999966 5999999994
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe-eeEEEecCCc
Q 011160 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRH 386 (492)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~ 386 (492)
+.+..+.||.++ |.+++| +|.|..||+|++|.+|++||+-... .+.++. +..
T Consensus 469 -----------------------qllDiLsGHEgP--Vs~l~f-~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~s 521 (893)
T KOG0291|consen 469 -----------------------QLLDILSGHEGP--VSGLSF-SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRS 521 (893)
T ss_pred -----------------------eeeehhcCCCCc--ceeeEE-ccccCeEEeccccceEEEEEeeccCceeeeEe-ecc
Confidence 677889999998 999998 9999999999999999999986543 344454 556
Q ss_pred eeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 387 VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
.+..++|+|+|+-|+++..||.|.+||+....+.
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 7999999999999999999999999999876544
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-40 Score=269.64 Aligned_cols=277 Identities=18% Similarity=0.293 Sum_probs=243.7
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.|.|+..+++++++|++|++||..+|++. ..|+||...|..++|+..|++||+++.|-
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e---------------------~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELE---------------------RSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhh---------------------hhhhccccceeEEEEecCccEEEecCCcc
Confidence 457899999999999999999999999987 77999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
.+++||.++.......+.+|...|.+++|.| .|.++++++.|.+|+.|++.++.++.. +.+|...|..++.+.||
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P--~gd~ilS~srD~tik~We~~tg~cv~t--~~~h~ewvr~v~v~~DG- 247 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP--LGDHILSCSRDNTIKAWECDTGYCVKT--FPGHSEWVRMVRVNQDG- 247 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEe--cCCeeeecccccceeEEecccceeEEe--ccCchHhEEEEEecCCe-
Confidence 9999999874333334479999999999999 899999999999999999999988877 99999999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC--------------CCceEEEecCCCeEE
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR--------------NANLFAVAGSDEYTR 229 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------------~~~~l~~~~~dg~v~ 229 (492)
.++++++.|.+|++|-+.++++...++. |.-+|-+++|-|. ++.++.+++.|++|+
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR~----------hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELRE----------HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhhc----------cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 6999999999999999999988777765 3446778887654 235899999999999
Q ss_pred EEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
+||+.++..+ ..+.+|...|..++|+|.|+||+++.|+ ++++||+++
T Consensus 318 ~wdv~tg~cL---------------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~----------------- 365 (406)
T KOG0295|consen 318 IWDVSTGMCL---------------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN----------------- 365 (406)
T ss_pred EEeccCCeEE---------------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc-----------------
Confidence 9999998643 2355689999999999999999999955 799999998
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
.++..++..|..- ++++.| +.+..++++|+-|.++++|..
T Consensus 366 ---------------------~~cmk~~~ah~hf--vt~lDf-h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 ---------------------LQCMKTLEAHEHF--VTSLDF-HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---------------------ceeeeccCCCcce--eEEEec-CCCCceEEeccccceeeeeec
Confidence 4667777777775 899998 888899999999999999974
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-38 Score=269.76 Aligned_cols=274 Identities=20% Similarity=0.349 Sum_probs=238.4
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.++.+|.+||||+.||.+|||+.. |.++ .+|..|+++|.++.|+.+|.||++++.|+
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~-G~l~---------------------~tl~~HkgPI~slKWnk~G~yilS~~vD~ 298 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKD-GNLI---------------------STLGQHKGPIFSLKWNKKGTYILSGGVDG 298 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecC-chhh---------------------hhhhccCCceEEEEEcCCCCEEEeccCCc
Confidence 4578999999999999999999988 7766 67889999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
++.+||..+++....+ .-|..+-..+.|- +...+++++.|+.|+|+.+....++.+ +.+|..+|.+|.|.|.+
T Consensus 299 ttilwd~~~g~~~q~f-~~~s~~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t--~~GH~g~V~alk~n~tg- 371 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQF-EFHSAPALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKT--FIGHHGEVNALKWNPTG- 371 (524)
T ss_pred cEEEEeccCceEEEee-eeccCCccceEEe---cCceEeecCCCceEEEEEecCCCccee--eecccCceEEEEECCCC-
Confidence 9999999999988777 6788887889997 567899999999999999988777765 88899999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC--------CceEEEecCCCeEEEEeccc
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--------ANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--------~~~l~~~~~dg~v~i~d~~~ 235 (492)
.+|++++.|++++||..........+.. |...|+.+.|+|.+ +..+++++.|++|++||+..
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~----------Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQA----------HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhh----------hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 6999999999999999888877766654 55678999998874 45799999999999999998
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
+.. ...+..|..+|++++|+|+|+++|+|+ ++.|.+|+.+++
T Consensus 442 gv~---------------i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~---------------------- 484 (524)
T KOG0273|consen 442 GVP---------------IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG---------------------- 484 (524)
T ss_pred Cce---------------eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----------------------
Confidence 763 334556899999999999999999999 779999999884
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
+..+.+.+... |..++| +.+|.+|..+-.|+.+++.|+.
T Consensus 485 ----------------~l~~s~~~~~~---Ifel~W-n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 485 ----------------KLVKSYQGTGG---IFELCW-NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ----------------heeEeecCCCe---EEEEEE-cCCCCEEEEEecCCCceEEEec
Confidence 44455555443 899999 9999999999999999998874
No 30
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-40 Score=280.11 Aligned_cols=382 Identities=56% Similarity=0.921 Sum_probs=311.4
Q ss_pred hhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCC
Q 011160 36 NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115 (492)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 115 (492)
.+...+.++...+.++.+...|..|.+.|..+.|+..|..|++|+.|..|.+||+..+..+..+..+|...|....|.|+
T Consensus 117 ~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 117 RFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF 196 (559)
T ss_pred HHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC
Confidence 56667888888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEeecCCCcEEEEecccCCeee-eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCC
Q 011160 116 TDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (492)
Q Consensus 116 ~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (492)
.+...+++++.||.|++=.+...+.+. ...+..|.++|..++.-|+.++.|++++.|+.+.-+|+++......+.+...
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 888999999999999998876655443 5668899999999999999999999999999999999999988777765433
Q ss_pred CCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-C
Q 011160 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S 273 (492)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~ 273 (492)
... .....+.++.+|.+.+.+++|+.|..+++||.+....... ..+...+|+.++.......|++++|+.+ +
T Consensus 277 ~~~----~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~---n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 277 DEK----ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN---NGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred CCc----cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc---cchhhhcCCccccccCcccceeEEecCCcc
Confidence 211 1236789999999888999999999999999987654322 2356778888888888889999999965 5
Q ss_pred CeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC
Q 011160 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (492)
Q Consensus 274 ~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 353 (492)
.+|++..+..|++|.-..+.-..+.+..+. .....+.|+||.+..+|.++.||.|
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~-------------------------~~~~k~vYKGHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPR-------------------------EQYVKRVYKGHRNSRTVKGVNFFGP 404 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcch-------------------------hhccchhhcccccccccceeeeccC
Confidence 678888888999996555433222221111 0222344999999999999999999
Q ss_pred CCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcccCcccccccc-
Q 011160 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQFKPK- 432 (492)
Q Consensus 354 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~- 432 (492)
...|+++|++-|.|.||+-.+++.++.+++....|+||.-+|--..||++|.|.-|+||.+.+.+....+...+.+..+
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~rN 484 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKRN 484 (559)
T ss_pred ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhhh
Confidence 9999999999999999999999999999887779999999999999999999999999999776665554444433221
Q ss_pred c---ccccccccCchhhHHH
Q 011160 433 A---TRWMHHVLSPEDLMMQ 449 (492)
Q Consensus 433 ~---~~~~~~~~~~~~~~~~ 449 (492)
. ...-+.+..+.+..++
T Consensus 485 ~~~~~ed~~~~t~~~d~~m~ 504 (559)
T KOG1334|consen 485 KRERDEDSLTVTDPFDQYML 504 (559)
T ss_pred ccccccccccccCcHHHHHH
Confidence 1 1112334455666555
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-39 Score=293.65 Aligned_cols=280 Identities=21% Similarity=0.359 Sum_probs=235.7
Q ss_pred eecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
++..-...++|..|++|+.+||.|-.|..|++|.+...+ +..+ + +. .+ -..+=+.+.|-.+.+.|-
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l-k-~~------~~-----l~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL-K-DA------SD-----LSNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc-c-ch------hh-----hccccccccchhhhhccc
Confidence 333345679999999999999999999999999987543 2333 1 11 11 112223344444556665
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
........ +.+|.++|....|+|+. ++|++++.|+++++|.+.+..++-.++. |..+|..+.|+|.
T Consensus 439 ~~~~~~~~--L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~G----------H~~PVwdV~F~P~- 504 (707)
T KOG0263|consen 439 DSSGTSRT--LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKG----------HLAPVWDVQFAPR- 504 (707)
T ss_pred cCCceeEE--eecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecC----------CCcceeeEEecCC-
Confidence 55444443 89999999999999999 6899999999999999999998877764 6668999999998
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLG 294 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~ 294 (492)
|.+||+++.|++.++|...... +..+..+|...|.|+.|+|+..|+++|+.+ ++++||+.++
T Consensus 505 GyYFatas~D~tArLWs~d~~~---------------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-- 567 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDHNK---------------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-- 567 (707)
T ss_pred ceEEEecCCCceeeeeecccCC---------------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC--
Confidence 8999999999999999988754 566778899999999999999999999955 8999999984
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
..++.|.||..+ |.+++| ||+|++|++|+.||.|.+||+.+
T Consensus 568 ------------------------------------~~VRiF~GH~~~--V~al~~-Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 568 ------------------------------------NSVRIFTGHKGP--VTALAF-SPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred ------------------------------------cEEEEecCCCCc--eEEEEE-cCCCceEeecccCCcEEEEEcCC
Confidence 568899999998 999999 99999999999999999999999
Q ss_pred CeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
++++..+.+|.+.|.++.||.+|..||++|.|.+|++||+.....
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999999999999999999999999999999999976433
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-37 Score=310.80 Aligned_cols=293 Identities=16% Similarity=0.285 Sum_probs=232.9
Q ss_pred eecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCC----c----eeeeeccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE----R----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~----~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
.+..|.+.|++++|+|++++||+|+.|+.|+||++... . ....+ .+...+.+++|+|. .+.+|++++.|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~~las~~~D 554 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSY-IKSQVASSNFE 554 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccC-CCCEEEEEeCC
Confidence 34569999999999999999999999999999997532 1 11222 34567999999873 47889999999
Q ss_pred CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
|.|++||+.+++.+.. +.+|...|++++|+|..+.+|++|+.||.|++||++++..+..+. ....+.
T Consensus 555 g~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------~~~~v~ 621 (793)
T PLN00181 555 GVVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------TKANIC 621 (793)
T ss_pred CeEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------cCCCeE
Confidence 9999999988766544 788999999999997444689999999999999999988776664 223688
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (492)
++.|++.++.+|++|+.||.|++||+++.+. +.....+|...|.++.|. ++.+|++++ |+.|++
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--------------~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKL--------------PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 9999765588999999999999999986531 122334678899999997 566777776 778999
Q ss_pred EecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCe
Q 011160 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (492)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~ 366 (492)
||+....... ....+..+.+|... +..+.| +|++.+||+|+.|+.
T Consensus 687 Wd~~~~~~~~--------------------------------~~~~l~~~~gh~~~--i~~v~~-s~~~~~lasgs~D~~ 731 (793)
T PLN00181 687 WDLSMSISGI--------------------------------NETPLHSFMGHTNV--KNFVGL-SVSDGYIATGSETNE 731 (793)
T ss_pred EeCCCCcccc--------------------------------CCcceEEEcCCCCC--eeEEEE-cCCCCEEEEEeCCCE
Confidence 9987531100 02345678888876 778888 999999999999999
Q ss_pred EEEEecCCCeeeEEE-------------ecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 367 IFIWKKKGGELIRVI-------------EADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 367 i~iwd~~~~~~~~~~-------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
|++|+.....++..+ ..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999998765443222 234567999999999999999999999999986
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.8e-38 Score=291.25 Aligned_cols=296 Identities=23% Similarity=0.401 Sum_probs=251.1
Q ss_pred eeeEeecCc-cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCCCceEEeecCCC
Q 011160 52 GIYAKLDKH-RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (492)
Q Consensus 52 ~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 128 (492)
.....+.+| ...|.++.|+++|++|++++.++.+++|+....+ ....+ .+|...|.+++|+| ++.++++++.|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~--d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSP--DGSYLLSGSDDK 225 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECC--CCcEEEEecCCc
Confidence 345666555 7899999999999999999999999999997776 55555 78999999999999 999999999999
Q ss_pred cEEEEecccC-CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 129 QVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 129 ~v~iw~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
+|+|||+... ..+. .+.+|...|++++|+|++ +++++|+.|++|++||++++++...+.. |...|+
T Consensus 226 tiriwd~~~~~~~~~--~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~----------hs~~is 292 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLK--TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKG----------HSDGIS 292 (456)
T ss_pred eEEEeeccCCCeEEE--EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeec----------cCCceE
Confidence 9999999443 3444 488999999999999999 7999999999999999999999888875 566899
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCccc-ceEEEEEcCCCCeeEeecCC-cEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIY 285 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~-~i~ 285 (492)
+++|+++ +++|++++.|+.|++||+.++... +...+...... .++++.|+|++++|+++..+ .++
T Consensus 293 ~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 293 GLAFSPD-GNLLVSASYDGTIRVWDLETGSKL------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEECCC-CCEEEEcCCCccEEEEECCCCcee------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 9999998 789999999999999999988631 01111222222 69999999999999999955 899
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccc-eeeeeEEeecCCCcEEEEeecc
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDC 364 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~s~~g~~l~sg~~d 364 (492)
+|++..+ .....+.+|... ..+.+..+ ++.++++++|+.|
T Consensus 360 ~w~l~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 360 LWDLRSG--------------------------------------KSVGTYTGHSNLVRCIFSPTL-STGGKLIYSGSED 400 (456)
T ss_pred EEEccCC--------------------------------------cceeeecccCCcceeEecccc-cCCCCeEEEEeCC
Confidence 9999874 456667777664 22445555 7899999999999
Q ss_pred CeEEEEecCCCeeeEEEecC-CceeEEEeecCCCCeEEEee--CCCCEEEeccC
Q 011160 365 GRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSG--IESDIKILTPN 415 (492)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 415 (492)
+.|++|++.++..+..+.+| ...+..+.|+|..+++++++ .|+.+++|...
T Consensus 401 ~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 401 GSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999999999 88899999999999999998 68999999764
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-37 Score=277.08 Aligned_cols=286 Identities=25% Similarity=0.417 Sum_probs=243.6
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
+++++|.++|++++|+|++++|++++.+|.|++|++.++.....+ ..|...+..+.|+| +++.|++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA--DGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECC--CCCEEEEEcCCCeEEEEE
Confidence 567799999999999999999999999999999999988766666 68889999999999 889999999999999999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
+..++.... +..|...+.++.|+|++ .++++++.++.|.+||+++++....+.. +...+.+++|+|+
T Consensus 80 ~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~ 146 (289)
T cd00200 80 LETGECVRT--LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVNSVAFSPD 146 (289)
T ss_pred cCcccceEE--EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEEEEEEcCc
Confidence 987655544 66788899999999997 5778888899999999998776666542 4457999999998
Q ss_pred CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
+.++++++.++.|++||+++++... ....+...+.++.|+|+++.+++++ ++.+++||+..+
T Consensus 147 -~~~l~~~~~~~~i~i~d~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 209 (289)
T cd00200 147 -GTFVASSSQDGTIKLWDLRTGKCVA---------------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG- 209 (289)
T ss_pred -CCEEEEEcCCCcEEEEEccccccce---------------eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-
Confidence 6788888889999999998665322 2224567899999999998777777 778999999763
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
.....+..|... +.++.| +|++.++++++.+|.|++|++.
T Consensus 210 -------------------------------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 210 -------------------------------------KCLGTLRGHENG--VNSVAF-SPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred -------------------------------------ceecchhhcCCc--eEEEEE-cCCCcEEEEEcCCCcEEEEEcC
Confidence 233444455554 889998 9999999999889999999999
Q ss_pred CCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
+++....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999999999999996
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=260.23 Aligned_cols=285 Identities=20% Similarity=0.317 Sum_probs=240.5
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
.++.+-|....++||+.|++++|||+.+|++. .++.||...|..+++|+-..||.+++.
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---------------------ltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLK---------------------LTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEE---------------------EeecchhheeeeeeecccCceEEEecC
Confidence 35667788999999999999999999999988 789999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
|+.|+.||++..+.++.+ .||-..|+|++.+| .-+.|++|+.|.++++||+++...+.. +.+|..+|.++.+.|-
T Consensus 214 dk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhP--Tldvl~t~grDst~RvWDiRtr~~V~~--l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHP--TLDVLVTGGRDSTIRVWDIRTRASVHV--LSGHTNPVASVMCQPT 288 (460)
T ss_pred CCeeEEEechhhhhHHHh-ccccceeEEEeccc--cceeEEecCCcceEEEeeecccceEEE--ecCCCCcceeEEeecC
Confidence 999999999999998888 79999999999999 899999999999999999999887766 9999999999999998
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
.+ .+++|+.|++|++||++.++....+.. |...+.+++.+|. ...|++++.| .|+-|++..+....
T Consensus 289 dp-qvit~S~D~tvrlWDl~agkt~~tlt~----------hkksvral~lhP~-e~~fASas~d-nik~w~~p~g~f~~- 354 (460)
T KOG0285|consen 289 DP-QVITGSHDSTVRLWDLRAGKTMITLTH----------HKKSVRALCLHPK-ENLFASASPD-NIKQWKLPEGEFLQ- 354 (460)
T ss_pred CC-ceEEecCCceEEEeeeccCceeEeeec----------ccceeeEEecCCc-hhhhhccCCc-cceeccCCccchhh-
Confidence 86 579999999999999999988777664 5568999999998 6788888876 59999998876432
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
.+.+|...|++++.+.|+-++..+.++.+.+||.+++...+....
T Consensus 355 --------------nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t--------------------- 399 (460)
T KOG0285|consen 355 --------------NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQT--------------------- 399 (460)
T ss_pred --------------ccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccc---------------------
Confidence 356688899999999998666555577899999998754332110
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
......+.... .|.+.+| +..|..|++|..|.+|++|.-.
T Consensus 400 --------~vqpGSl~sEa---gI~as~f-Dktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 400 --------IVQPGSLESEA---GIFASCF-DKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------cccCCcccccc---ceeEEee-cccCceEEeccCCcceEEEecc
Confidence 01111122222 2788888 9999999999999999999753
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-38 Score=287.11 Aligned_cols=258 Identities=21% Similarity=0.284 Sum_probs=219.0
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhh----hhhhcccccccceeee------eeeEeecCccceEEEEEEcCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTR----NFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTD 72 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~s~~ 72 (492)
.+-|++++++||.|..|..|++|.+...++..- .....-..+.|-.... ...+++.||.++|..+.|+|+
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd 462 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD 462 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence 456899999999999999999999985432211 1111211222221111 344568999999999999999
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
.++|++++.|+++|+|.+.+...+..+ .||..+|+.+.|+| .|-++||++.|++.++|......+... +.+|-..
T Consensus 463 ~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRi--faghlsD 537 (707)
T KOG0263|consen 463 RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRI--FAGHLSD 537 (707)
T ss_pred ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhh--hcccccc
Confidence 999999999999999999999998887 79999999999999 999999999999999999887666655 8999999
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
|.|+.|+|+. +++++||.|.+|++||..+|..+..|.. |..+|.+++|+|. |.+|++|+.||.|.+||
T Consensus 538 V~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------H~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 538 VDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTG----------HKGPVTALAFSPC-GRYLASGDEDGLIKIWD 605 (707)
T ss_pred cceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecC----------CCCceEEEEEcCC-CceEeecccCCcEEEEE
Confidence 9999999999 6899999999999999999999998865 6779999999998 89999999999999999
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
+.+++.. ....+|.+.|.++.|+.+|..||+++ |.+|++||+...
T Consensus 606 l~~~~~v---------------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLV---------------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcch---------------hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9998743 33445789999999999999999999 668999998764
No 37
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.8e-39 Score=249.07 Aligned_cols=290 Identities=20% Similarity=0.275 Sum_probs=250.8
Q ss_pred EeecCccceEEEEEEcC---CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 55 AKLDKHRGCVNTVSFNT---DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
.+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.+| .+|.+.|++..... +....++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~--na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNK--NATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCc--hhhhhhhhcccchhh
Confidence 46789999999999985 8999999999999999999999999999 79999999999988 888889999999999
Q ss_pred EEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc-ceeecCCCCCCCcceeecceEEEE
Q 011160 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
+||.-++..+.. + .|..-|..++|+.|. +.|++|+.+..+++||++..+.. ..+. + +.+.|..+.
T Consensus 85 vw~a~tgdelhs--f-~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~--------g--htg~Ir~v~ 150 (334)
T KOG0278|consen 85 VWDAVTGDELHS--F-EHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEIS--------G--HTGGIRTVL 150 (334)
T ss_pred hhhhhhhhhhhh--h-hhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhc--------C--CCCcceeEE
Confidence 999999887664 3 488899999999998 57899999999999999876543 2222 2 666899999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
|... .+.|++.+.|++||+||.++++..+++.+ +.+|+++.++++|++|..+....|.+||..
T Consensus 151 wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------~s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 151 WCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred Eecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------CCCCcceeeccCCCEEEEecCceeEEeccc
Confidence 9886 57888889999999999999987665443 467899999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
+ ...++.++... .|.+... +|+...+++|++|+.++.|
T Consensus 214 s--------------------------------------f~~lKs~k~P~---nV~SASL-~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 214 S--------------------------------------FGLLKSYKMPC---NVESASL-HPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred c--------------------------------------ccceeeccCcc---ccccccc-cCCCceEEecCcceEEEEE
Confidence 6 33444444333 3788887 9999999999999999999
Q ss_pred ecCCCeeeEEE-ecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 371 KKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 371 d~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
|..+|+.+..+ ++|.++|.++.|+|+|...|+|+.||+|++|....++..
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999886 899999999999999999999999999999999877554
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.8e-39 Score=260.55 Aligned_cols=277 Identities=20% Similarity=0.312 Sum_probs=235.0
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 139 (492)
....|+|+.+. ...+++|..|++|+|||..+-.++..+ .||++.|.|+.| +.+.|++|+.|.+|++||+.+++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqy----d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQY----DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeec----cceEEEecCCCceEEEEeccCCc
Confidence 46789999984 567999999999999999888877666 899999999999 66799999999999999999999
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (492)
++.. +.+|...|..+.|+. .++++++.|.++.+||+.....+...... .| |...|+.+.|+. +++
T Consensus 269 ~l~t--lihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVL-----vG--HrAaVNvVdfd~---kyI 333 (499)
T KOG0281|consen 269 PLNT--LIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVL-----VG--HRAAVNVVDFDD---KYI 333 (499)
T ss_pred hhhH--HhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHH-----hh--hhhheeeecccc---ceE
Confidence 8876 889999999999985 37899999999999999887654332221 12 666899999974 599
Q ss_pred EEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 298 (492)
++++.|.+|++|++.+.+.+ ....+|...|.|+.+ .++++++|+ |.+|++||+..
T Consensus 334 VsASgDRTikvW~~st~efv---------------Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~------- 389 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFV---------------RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC------- 389 (499)
T ss_pred EEecCCceEEEEeccceeee---------------hhhhcccccceehhc--cCeEEEecCCCceEEEEeccc-------
Confidence 99999999999999998743 456678888888876 688999999 56899999988
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe--
Q 011160 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-- 376 (492)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~-- 376 (492)
..+++.++||..- |.++.| |.+.+++|+.||+|+|||+..+.
T Consensus 390 -------------------------------G~cLRvLeGHEeL--vRciRF---d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 390 -------------------------------GACLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred -------------------------------cHHHHHHhchHHh--hhheee---cCceeeeccccceEEEEecccccCC
Confidence 4678899999987 899998 67899999999999999997653
Q ss_pred -------eeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 377 -------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 377 -------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
++..+..|.+.|..+.| |...+++++.|.+|.|||+..+...
T Consensus 434 ra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 434 RAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 34556679999999999 5678999999999999999876443
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.5e-39 Score=258.72 Aligned_cols=292 Identities=19% Similarity=0.311 Sum_probs=249.4
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
..+-|+|||.+|++|+.||.|.+||..+|++... .+++....|.-|..+|.|+.|+.|..+||+|+.
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-------------LkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-------------LKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhh-------------hhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence 4577999999999999999999999999998732 122333445568899999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
||.|+||.+.+|.+++.|...|+..|+|+.|+. |+..+++++.|.++++--+.++++... +.+|+..|+...|.++
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKE--frGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKE--FRGHSSYVNEATFTDD 359 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHH--hcCccccccceEEcCC
Confidence 999999999999999999889999999999999 999999999999999999999988876 9999999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
| +.+++++.||+|++|+..+.+++..++... ...+|+++-.-|.++..++++....+|+|.++...-
T Consensus 360 G-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~--------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv---- 426 (508)
T KOG0275|consen 360 G-HHIISASSDGTVKVWHGKTTECLSTFKPLG--------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV---- 426 (508)
T ss_pred C-CeEEEecCCccEEEecCcchhhhhhccCCC--------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE----
Confidence 9 688999999999999999999998887543 445788888888888889999888899888874321
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
|.+ |+. |+
T Consensus 427 ----------------------Vrs--fsS-Gk----------------------------------------------- 434 (508)
T KOG0275|consen 427 ----------------------VRS--FSS-GK----------------------------------------------- 434 (508)
T ss_pred ----------------------Eee--ecc-CC-----------------------------------------------
Confidence 111 111 00
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEE
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (492)
..... ..+.+. +|.|.++++.++|+.++.|.+.+|++..++..|..-|..++-+|..+.||
T Consensus 435 -----------------REgGd-Fi~~~l-SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 435 -----------------REGGD-FINAIL-SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred -----------------ccCCc-eEEEEe-cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhh
Confidence 00011 233444 99999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCEEEecc
Q 011160 402 SSGIESDIKILTP 414 (492)
Q Consensus 402 s~~~dg~i~iw~~ 414 (492)
+-+.||.+++|..
T Consensus 496 sYsEDgllKLWkp 508 (508)
T KOG0275|consen 496 SYSEDGLLKLWKP 508 (508)
T ss_pred hhcccchhhhcCC
Confidence 9999999999963
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=238.86 Aligned_cols=282 Identities=17% Similarity=0.281 Sum_probs=220.2
Q ss_pred CCCCCC-CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEee-cCccceEEEEEEcCCCCEEEEecC
Q 011160 4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 4 ~~~~~~-~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
+.++|. |..||+|+.|..||||+...+. .+.+...+ .+|+..|.+++|+|.|++||+|+.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGD------------------SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCC------------------cEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 445666 7899999999999999988432 12333444 379999999999999999999999
Q ss_pred CCeEEEEECCCC--ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe-eeeEEeecCCCceEEEEE
Q 011160 82 DRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 82 d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~i~~ 158 (492)
|.++.||.-..+ +++..+ .||...|.+++|++ +|.+||++++|+.|-||.+..... .....++.|+..|..+.|
T Consensus 82 D~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATL-EGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred cceEEEeecCCCceeEEeee-eccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence 999999986644 444555 89999999999999 999999999999999999985543 333458999999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCC-C--CccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 159 EPGSPHVFYTCGEDGLVQHFDLRT-G--AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
+|.. .+|++++.|.+|++|.-.. . .+.+.+.. +...|.+++|+|. |..|++++.|++++||...+
T Consensus 159 HPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g----------~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 159 HPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG----------HENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC----------ccceEEEEEecCC-CceEEEecCCcceEeeeecc
Confidence 9988 5899999999999998773 2 23444433 4558999999998 78999999999999999763
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
. +...|...++.++|. + ..|++++ ++.|++|..........+
T Consensus 227 ~-------------------~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~---------------- 269 (312)
T KOG0645|consen 227 D-------------------LSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSW---------------- 269 (312)
T ss_pred C-------------------cchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchH----------------
Confidence 2 223367789999998 4 4666665 778999976632111110
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC-CcEEEEeeccCeEEEEecC
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~-g~~l~sg~~dg~i~iwd~~ 373 (492)
......-..|... |+++.| .|. ..+|++|++||.|++|.+.
T Consensus 270 ---------------~l~~~~~~aHe~d--VNsV~w-~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 270 ---------------NLLAKKEGAHEVD--VNSVQW-NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---------------HHHHhhhcccccc--cceEEE-cCCCCCceeecCCCceEEEEEec
Confidence 1122234456664 999999 894 6799999999999999874
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-37 Score=271.94 Aligned_cols=287 Identities=22% Similarity=0.338 Sum_probs=252.3
Q ss_pred eeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
...+++..|+..|.++.|+|...+++++-.+|.|.||+.++...+..+ .-..-+|.+..|-+ ..+++++|+.|..|+
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfia--RknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIA--RKNWIVTGSDDMQIR 80 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeee--ccceEEEecCCceEE
Confidence 344667779999999999999999999999999999999999999888 56677999999998 899999999999999
Q ss_pred EEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-CccceeecCCCCCCCcceeecceEEEE
Q 011160 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
||+..+.+.+.. +..|.+.|.+++.+|..| ++++++.|-.|++||.+.. .+.+.+. + |...|.+++
T Consensus 81 Vfnynt~ekV~~--FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe--------G--H~HyVMqv~ 147 (794)
T KOG0276|consen 81 VFNYNTGEKVKT--FEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE--------G--HEHYVMQVA 147 (794)
T ss_pred EEecccceeeEE--eeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc--------C--cceEEEEEE
Confidence 999999888876 999999999999999997 7899999999999999865 3445554 3 344799999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC--CeeEeecCC-cEEEE
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDE-FIYLF 287 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~-~i~~~ 287 (492)
|.|.+.+.+++++-|++|++|.+.+.. +...+.+|...|+|+.+-+-| .+|++|+|+ .+++|
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~---------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPH---------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCC---------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 999989999999999999999997753 344566899999999999865 599999977 79999
Q ss_pred ecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeE
Q 011160 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (492)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i 367 (492)
|..+ ..+++++.||.+. |..++| +|.-.++++|++||++
T Consensus 213 DyQt--------------------------------------k~CV~TLeGHt~N--vs~v~f-hp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 213 DYQT--------------------------------------KSCVQTLEGHTNN--VSFVFF-HPELPIIISGSEDGTV 251 (794)
T ss_pred ecch--------------------------------------HHHHHHhhccccc--ceEEEe-cCCCcEEEEecCCccE
Confidence 9998 6789999999998 888887 9999999999999999
Q ss_pred EEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEE
Q 011160 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (492)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 410 (492)
+||+..+.++..++.-.-..|++++-.+.++.++.|...|.|.
T Consensus 252 riWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 252 RIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999998888877778899999999888888887666554
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=272.18 Aligned_cols=378 Identities=15% Similarity=0.182 Sum_probs=282.3
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
|+.+++ +.-..|.+||+.+|++... -.+..-...|+|++-+|+.-+||.|..||.|+||+
T Consensus 34 Gr~va~-~a~E~vn~WdlRtge~~~~-------------------l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~ 93 (888)
T KOG0306|consen 34 GRAVAV-SALEQVNIWDLRTGEIEKK-------------------LILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFS 93 (888)
T ss_pred CcEEEE-eccccEeEEeeecchhhhh-------------------hhhhcccceEEEeeccCCcceEEEEecCceEEeec
Confidence 455444 3345799999999966532 11223346899999999999999999999999999
Q ss_pred CCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEE
Q 011160 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 169 (492)
..++....++ .+|...|+.+.|.. .|..|++|+.|+.|.+||+-....... +.+|.+.|+.+-|..+. .++++.
T Consensus 94 ~~s~~~~~tf-ngHK~AVt~l~fd~--~G~rlaSGskDt~IIvwDlV~E~Gl~r--L~GHkd~iT~~~F~~~~-~~lvS~ 167 (888)
T KOG0306|consen 94 LESEEILITF-NGHKAAVTTLKFDK--IGTRLASGSKDTDIIVWDLVGEEGLFR--LRGHKDSITQALFLNGD-SFLVSV 167 (888)
T ss_pred cCCCceeeee-cccccceEEEEEcc--cCceEeecCCCccEEEEEeccceeeEE--eecchHHHhHHhccCCC-eEEEEe
Confidence 9988887777 89999999999999 999999999999999999977665554 89999999999998855 689999
Q ss_pred cCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc------------
Q 011160 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK------------ 237 (492)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~------------ 237 (492)
+.|+.|++||+++..+..+... +.+.+..+++++ +.+++++.|+.+++|++....
T Consensus 168 sKDs~iK~WdL~tqhCf~Thvd----------~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~ 234 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQHCFETHVD----------HRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTK 234 (888)
T ss_pred ccCceEEEEecccceeeeEEec----------ccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceee
Confidence 9999999999999998877654 666899999987 488889999999999981100
Q ss_pred ------------ccC-------C-------------C----------------------CC-------------------
Q 011160 238 ------------WDG-------S-------------T----------------------DF------------------- 244 (492)
Q Consensus 238 ------------~~~-------~-------------~----------------------~~------------------- 244 (492)
... . . ..
T Consensus 235 ~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~ 314 (888)
T KOG0306|consen 235 LRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRL 314 (888)
T ss_pred ccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHH
Confidence 000 0 0 00
Q ss_pred ------------------CCC----------ccccCCC--------------CcCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 245 ------------------GQP----------ADYFCPP--------------NLIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 245 ------------------~~~----------~~~~~~~--------------~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
+.+ ...++.. ....+|...|.++++|.+...+++++.+
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~ 394 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGE 394 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCC
Confidence 000 0000000 1234678889999999999999999999
Q ss_pred cEEEEecCCCCCCCCCCCC--------C------------------------------CCccccccccCCCCCCCCCCCC
Q 011160 283 FIYLFTQDMGLGPNPPPSS--------P------------------------------VSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~--------~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
.+++|+..+.+....+... | ..........+|+++..+..+.
T Consensus 395 SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred cEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC
Confidence 9999999987665554411 0 0111112334566666666555
Q ss_pred CCCccccCCce-----------eeccc-----cceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCcee
Q 011160 325 ANTDVRIAPQV-----------YKGHR-----NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV 388 (492)
Q Consensus 325 ~~~~~~~~~~~-----------~~~~~-----~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 388 (492)
+.+.+...... +.-+. -...|.++.+ ||||++||.+--|.+|+||-+.+.+..-.+.||.-+|
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~-Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV-SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE-cCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 54433211111 11010 1113788888 9999999999999999999999999999999999999
Q ss_pred EEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcc-cCccc
Q 011160 389 NCIEPHPHSTVLASSGIESDIKILTPNAADRATL-PTNIE 427 (492)
Q Consensus 389 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-~~~~~ 427 (492)
.+|..|||+++++|||.|++|+||-++-|.+... ..|.+
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 9999999999999999999999999999887653 44433
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-37 Score=280.75 Aligned_cols=306 Identities=16% Similarity=0.253 Sum_probs=264.6
Q ss_pred eecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
.|...+.+|..++|+|...+++++-..|.|++||.+-+.++..| ..|.++|..++|+| .+.++++|+.|-.|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~--~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHP--TQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecC--CCCeEEecCCccEEEEEec
Confidence 35556789999999999999999999999999999999999998 79999999999999 9999999999999999999
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
.+.++..+ +.+|-+.|..+.|++.-| .++++|.|.+|+||+..+++++..++. |.-.|.|.+|+|.
T Consensus 81 k~rrclft--L~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltG----------HnHYVMcAqFhpt- 146 (1202)
T KOG0292|consen 81 KTRRCLFT--LLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTG----------HNHYVMCAQFHPT- 146 (1202)
T ss_pred ccceehhh--hccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEec----------CceEEEeeccCCc-
Confidence 99888776 899999999999999997 899999999999999999999998875 4447999999997
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCC--CC------------CccccCCCCcCCCcccceEEEEEcCCCCeeEeecC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDF--GQ------------PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (492)
..+++++|-|.+|++||+...+......- .. +......+.+..+|...|+.++|+|.-.+|++|+|
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 67999999999999999875543222111 00 00012345677899999999999999999999997
Q ss_pred C-cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE
Q 011160 282 E-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (492)
Q Consensus 282 ~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s 360 (492)
+ .|++|.....+ ...+.+..||.+. |.++.| +|...++++
T Consensus 227 DRqVKlWrmnetK------------------------------------aWEvDtcrgH~nn--Vssvlf-hp~q~lIlS 267 (1202)
T KOG0292|consen 227 DRQVKLWRMNETK------------------------------------AWEVDTCRGHYNN--VSSVLF-HPHQDLILS 267 (1202)
T ss_pred cceeeEEEecccc------------------------------------ceeehhhhcccCC--cceEEe-cCccceeEe
Confidence 7 69999987632 5677889999998 899998 999999999
Q ss_pred eeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 361 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
.++|++|+|||+...+.+++++-....-+.++-+|..+++|.| .|+-+.||.++...
T Consensus 268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleREr 324 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERER 324 (1202)
T ss_pred cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccC
Confidence 9999999999999999999998777889999999999988766 57778888887543
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=260.04 Aligned_cols=263 Identities=15% Similarity=0.215 Sum_probs=225.5
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhh---------------hhhhcccccccceeee------eeeEeecCc
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTR---------------NFALRRRASEDLVLRL------GIYAKLDKH 60 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~---------------~~~~~~~~~~~~~~~~------~~~~~~~~h 60 (492)
.+|-++|..+.++++--.|.|.|||.++...+.+ +...+..+++|+.+|. +..+.|.+|
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 5677899999999999999999999998777655 1122688899998886 778899999
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
..-|.|++.+|...+++|+|.|-+|++||.+..-...+.+.||+.-|.+++|+|. |.+.+++++.|++|++|.+.+..+
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCC
Confidence 9999999999999999999999999999999776555555899999999999994 788999999999999999987776
Q ss_pred eeeEEeecCCCceEEEEEcCCCC-cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (492)
..+ +.+|...|+|+.+-+.|. -+|++|+.|.+|++||.++..+++++.. |...|..+.|+|. --++
T Consensus 176 nfT--l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG----------Ht~Nvs~v~fhp~-lpii 242 (794)
T KOG0276|consen 176 NFT--LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG----------HTNNVSFVFFHPE-LPII 242 (794)
T ss_pred cee--eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc----------ccccceEEEecCC-CcEE
Confidence 665 899999999999988652 3789999999999999999999998875 5557999999998 6799
Q ss_pred EEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~ 293 (492)
++|+.||+++||...+.++...+.+ ....+.+++-.+.+..++.|.|....+..+....
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn~---------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgree 301 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLNY---------------GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREE 301 (794)
T ss_pred EEecCCccEEEecCcceehhhhhhc---------------CCceEEEEeecCCCCeEEEeccCCcEEEEccCCC
Confidence 9999999999999999876655433 3567999999998888999998876666665543
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=280.02 Aligned_cols=279 Identities=25% Similarity=0.396 Sum_probs=232.9
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCc--chhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQ--LSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
+.|+++|+.+++++.++.+++|+..++. +. +.+.+|...|++++|+|+++++++++.
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~---------------------~~l~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLL---------------------RELSGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhh---------------------ccccccccceeeeEECCCCcEEEEecC
Confidence 4689999999999999999999997665 33 667899999999999999999999999
Q ss_pred CCeEEEEEC-CCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 82 DRRVILWDW-KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 82 d~~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
|++|+|||+ ..+..+..+ .+|...|++++|+| .++++++|+.|++|+|||++++.+... +.+|...|++++|++
T Consensus 224 D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~--l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRK--LKGHSDGISGLAFSP 298 (456)
T ss_pred CceEEEeeccCCCeEEEEe-cCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEe--eeccCCceEEEEECC
Confidence 999999999 444666666 79999999999999 999999999999999999999777766 999999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCc--cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
++ ++|++++.|+.|++||+.++.. ...+..... .. .+++++|+|+ +.++++++.|+.+++||++.+..
T Consensus 299 d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~-~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 299 DG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN-------SA-PVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred CC-CEEEEcCCCccEEEEECCCCceeeeecccCCCC-------CC-ceeEEEECCC-CcEEEEecCCCeEEEEEccCCcc
Confidence 99 6889999999999999999983 344332211 22 6899999998 78999999999999999998764
Q ss_pred cCCCCCCCCccccCCCCcCCCcc--cceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCC
Q 011160 239 DGSTDFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (492)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (492)
.... ..... ..+.+...++.++++++++ +..|++|++.+
T Consensus 369 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s------------------------ 410 (456)
T KOG0266|consen 369 VGTY--------------TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS------------------------ 410 (456)
T ss_pred eeee--------------cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc------------------------
Confidence 3321 11111 2455556678999999999 55899999987
Q ss_pred CCCCCCCCCCCCccccCCceeecc-ccceeeeeEEeecCCCcEEEEee--ccCeEEEEecC
Q 011160 316 HTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKK 373 (492)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~s~~g~~l~sg~--~dg~i~iwd~~ 373 (492)
...+..+.+| ... +..+.+ +|...++++++ .|+.|++|...
T Consensus 411 --------------~~~~~~l~~h~~~~--~~~~~~-~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 411 --------------GGILQRLEGHSKAA--VSDLSS-HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --------------cchhhhhcCCCCCc--eecccc-CCCcCeeeecCcCCCceEEEecCC
Confidence 3556777888 443 788888 99999999988 78999999753
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-35 Score=236.10 Aligned_cols=299 Identities=23% Similarity=0.415 Sum_probs=241.8
Q ss_pred eeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC--CC
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DG 128 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg 128 (492)
++..+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++..+.++ ..+...+..++|.. ....++.++. |.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth--~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTH--HSNTVIHSSTKEDD 80 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEec--CCceEEEccCCCCC
Confidence 3344566667889999999999999999999999999999999998888 56666788889877 6666666665 88
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
+|+..++.+.+.+.. +.+|...|++++.+|-+ ..+++++.|++|++||++..++...+... .-..
T Consensus 81 tIryLsl~dNkylRY--F~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~~pi 145 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRY--FPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------GRPI 145 (311)
T ss_pred ceEEEEeecCceEEE--cCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC------------CCcc
Confidence 999999999888866 99999999999999998 58999999999999999988887666432 2356
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEE
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~ 287 (492)
++|+|+ |-++|++.....|++||+|..... |...+.+ ........+.+.|||+|++|+.++ .+.+++.
T Consensus 146 ~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkg-------PF~tf~i---~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 146 AAFDPE-GLIFALANGSELIKLYDLRSFDKG-------PFTTFSI---TDNDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred eeECCC-CcEEEEecCCCeEEEEEecccCCC-------CceeEcc---CCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 899998 788888888889999999987532 2222222 223467889999999999888777 5579999
Q ss_pred ecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceee-eeEEeecCCCcEEEEeeccCe
Q 011160 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV-KGVNFFGPKCEYVVSGSDCGR 366 (492)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~s~~g~~l~sg~~dg~ 366 (492)
|.-.| ....++.++.+...+ .+.+| +||++++++|+.||+
T Consensus 215 DAf~G--------------------------------------~~~~tfs~~~~~~~~~~~a~f-tPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 215 DAFDG--------------------------------------TVKSTFSGYPNAGNLPLSATF-TPDSKFVLSGSDDGT 255 (311)
T ss_pred EccCC--------------------------------------cEeeeEeeccCCCCcceeEEE-CCCCcEEEEecCCCc
Confidence 98775 344555555554322 24444 999999999999999
Q ss_pred EEEEecCCCeeeEEEec-CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 367 IFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 367 i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
|.+|++++|..+..+++ +.+++.++.|+|.-.+++|+ +..+.+|-+...+.
T Consensus 256 i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 256 IHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred EEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccccc
Confidence 99999999999999998 68899999999988778777 57899998765443
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=254.26 Aligned_cols=274 Identities=17% Similarity=0.291 Sum_probs=229.1
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
|...+++|..|.+|+|||..+-++. +.|.||++.|.|+.|. .+.|++|+.|.+|+||
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~---------------------~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvW 262 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECL---------------------KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVW 262 (499)
T ss_pred cchhhhcccccCceEEeccccHHHH---------------------HhhhcCCCcEEeeecc--ceEEEecCCCceEEEE
Confidence 4467899999999999999976666 7799999999999995 5699999999999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee-eeEEeecCCCceEEEEEcCCCCcEEE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
|+++++++.++ .+|...|..+.|+ ..++++++.|.++.+||+.....+ ....+.+|...|+.+.|+. ++++
T Consensus 263 Dv~tge~l~tl-ihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIV 334 (499)
T KOG0281|consen 263 DVNTGEPLNTL-IHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIV 334 (499)
T ss_pred eccCCchhhHH-hhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEE
Confidence 99999998888 6899999999995 478999999999999999876532 2234779999999999975 4899
Q ss_pred EEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCC
Q 011160 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 247 (492)
+++.|.+|++|++.+.+.+..+.. |...|.|+.+. ++++++|+.|.+|++||+..+..
T Consensus 335 sASgDRTikvW~~st~efvRtl~g----------HkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~c--------- 392 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLNG----------HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGAC--------- 392 (499)
T ss_pred EecCCceEEEEeccceeeehhhhc----------ccccceehhcc---CeEEEecCCCceEEEEeccccHH---------
Confidence 999999999999999999888765 55578888875 67999999999999999999874
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (492)
.....+|+.-|.++.| +.+.|++|. ||+|++||+..+..+....
T Consensus 393 ------LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~--------------------------- 437 (499)
T KOG0281|consen 393 ------LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPA--------------------------- 437 (499)
T ss_pred ------HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccc---------------------------
Confidence 3456778999999999 556788887 8899999998865443211
Q ss_pred CccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCee
Q 011160 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (492)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~ 377 (492)
...++.++..|.+. |..+.| |...+++++.|.+|-|||..++-.
T Consensus 438 --~~~Cl~~lv~hsgR--VFrLQF---D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 438 --STLCLRTLVEHSGR--VFRLQF---DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred --cchHHHhhhhccce--eEEEee---cceEEEeccCCCeEEEEEcCCCCc
Confidence 12355666777766 889988 667899999999999999876644
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=257.41 Aligned_cols=245 Identities=19% Similarity=0.321 Sum_probs=210.1
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
+-+|..+.|.|+|+.|++|+..|.+.+|+...... ..++..|..+|.++.|++ ++.++++|+.+|.|++|+......
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-EtilQaHDs~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-ETILQAHDSPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH-HHHhhhhcccceeEEEcc--CCCEEEEcCCCceEEecccchhhh
Confidence 45899999999999999999999999999754443 334478999999999999 999999999999999999865443
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
... ...|...|++++|+|+. ..|++++.||+|+|||....+....+.. |.-.|.++.|+|. ..+++
T Consensus 173 k~~--~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~G----------HgwdVksvdWHP~-kgLia 238 (464)
T KOG0284|consen 173 KII--QAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRG----------HGWDVKSVDWHPT-KGLIA 238 (464)
T ss_pred HHh--hHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheecc----------CCCCcceeccCCc-cceeE
Confidence 322 33455899999999977 5789999999999999998887777654 5567999999998 67999
Q ss_pred EecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCC
Q 011160 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 221 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~ 300 (492)
+|+.|..|++||.+++.
T Consensus 239 sgskDnlVKlWDprSg~--------------------------------------------------------------- 255 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGS--------------------------------------------------------------- 255 (464)
T ss_pred EccCCceeEeecCCCcc---------------------------------------------------------------
Confidence 99999999999998754
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEE
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV 380 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 380 (492)
++.++.+|.+. |..+.| .|++++|+++|.|..++++|+.+.+.+..
T Consensus 256 -------------------------------cl~tlh~HKnt--Vl~~~f-~~n~N~Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 256 -------------------------------CLATLHGHKNT--VLAVKF-NPNGNWLLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred -------------------------------hhhhhhhccce--EEEEEE-cCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence 34455666665 899998 99999999999999999999999999999
Q ss_pred EecCCceeEEEeecCCC-CeEEEeeCCCCEEEeccCCCCC
Q 011160 381 IEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 381 ~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
+++|...|+++.|+|-. .+|.+|+.||.|..|.+...+.
T Consensus 302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred hhcchhhheeeccccccccceeeccCCCceEEEecccccc
Confidence 99999999999999965 4788999999999999984433
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-36 Score=258.89 Aligned_cols=275 Identities=20% Similarity=0.235 Sum_probs=231.0
Q ss_pred CCCCCceEeeccCcceEEEEeecc-CcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCe
Q 011160 6 NNNNNKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (492)
|+..+.+|++++.|+.|+||++-. +.++ +++.+|..+|.+++|+++|..++|+|.|+.
T Consensus 223 fp~~~hLlLS~gmD~~vklW~vy~~~~~l---------------------rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 223 FPKKGHLLLSGGMDGLVKLWNVYDDRRCL---------------------RTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccceeeEEEecCCCceEEEEEEecCccee---------------------hhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 455899999999999999999875 5555 889999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCC-ceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
|++||+++|.++..+. ....++|+.|.| ++ +.+++|+.|+.|+.||+++++.+.. +..|-+.|..+.|-++|
T Consensus 282 lKlwDtETG~~~~~f~--~~~~~~cvkf~p--d~~n~fl~G~sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g- 354 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH--LDKVPTCVKFHP--DNQNIFLVGGSDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEG- 354 (503)
T ss_pred eeeeccccceEEEEEe--cCCCceeeecCC--CCCcEEEEecCCCcEEEEeccchHHHHH--HHhhhhheeeeEEccCC-
Confidence 9999999999998883 344789999999 76 8899999999999999999987765 88899999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 243 (492)
..+++.+.|++++||+.+.+..+..+... ..-...++..+|. +.++++-+.|..|.+|.+...-..
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~---------~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~---- 420 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADP---------EMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRL---- 420 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcch---------hhccCcceecCCC-CCeehhhccCceEEEEeccccccc----
Confidence 57899999999999999988877655432 2224678999997 789999999999999986542111
Q ss_pred CCCCccccCCCCcCCCcc--cceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 244 FGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
.......+|. +.-..+.|||||.+|++|+ +|.+.+||.++
T Consensus 421 --------nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt----------------------------- 463 (503)
T KOG0282|consen 421 --------NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT----------------------------- 463 (503)
T ss_pred --------CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh-----------------------------
Confidence 1122333443 4556789999999999999 77999999988
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEEeeccCeEEEEe
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWK 371 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~~dg~i~iwd 371 (492)
.+.+..+++|... +..+.| +|.. ..||+++.||.|++|+
T Consensus 464 ---------~kl~~~lkah~~~--ci~v~w-HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 ---------TKLVSKLKAHDQP--CIGVDW-HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ---------hhhhhccccCCcc--eEEEEe-cCCCcceeEecccCceeEecC
Confidence 4677888999766 888998 7764 5899999999999996
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.3e-35 Score=245.01 Aligned_cols=273 Identities=22% Similarity=0.339 Sum_probs=229.3
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC---CCEEEEecCCCeEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---GDILISGSDDRRVI 86 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~i~ 86 (492)
++.+++|+.||.+||||.. |+.. .++.||.++|.+++|.-. ...|++++.|.+++
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~---------------------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSI---------------------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceE---------------------EEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 6889999999999999998 7766 788999999999888533 34699999999999
Q ss_pred EEECCCCceeeee---ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC-----------------------Ce
Q 011160 87 LWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-----------------------GG 140 (492)
Q Consensus 87 iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-----------------------~~ 140 (492)
+|.++.++..... ..||...|.+++..+ ++..+++|+.|..|.||+.... ..
T Consensus 173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 9999887653322 249999999999999 9999999999999999993211 01
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
.+...+.+|..+|.++.|++.+ .+++++.|.+|+.||+.++.....+. ....++++..+|. .++|+
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~-----------~~ksl~~i~~~~~-~~Ll~ 316 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLT-----------TNKSLNCISYSPL-SKLLA 316 (423)
T ss_pred CceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeee-----------cCcceeEeecccc-cceee
Confidence 2334578999999999999954 78999999999999999999888776 4447899999997 78999
Q ss_pred EecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCC
Q 011160 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 221 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~ 300 (492)
+|+.|..+++||.+++. +
T Consensus 317 ~gssdr~irl~DPR~~~------------------------g-------------------------------------- 334 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGD------------------------G-------------------------------------- 334 (423)
T ss_pred ecCCCCceeecCCCCCC------------------------C--------------------------------------
Confidence 99999999999998753 1
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEeeccCeEEEEecCCCe-ee
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKGGE-LI 378 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~~dg~i~iwd~~~~~-~~ 378 (492)
......|.+|.+. |.++.| +|... .|++|+.|+++++||+++.+ ++
T Consensus 335 -----------------------------s~v~~s~~gH~nw--Vssvkw-sp~~~~~~~S~S~D~t~klWDvRS~k~pl 382 (423)
T KOG0313|consen 335 -----------------------------SVVSQSLIGHKNW--VSSVKW-SPTNEFQLVSGSYDNTVKLWDVRSTKAPL 382 (423)
T ss_pred -----------------------------ceeEEeeecchhh--hhheec-CCCCceEEEEEecCCeEEEEEeccCCCcc
Confidence 1123456778875 888888 87654 67899999999999999887 89
Q ss_pred EEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 379 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
..+.+|...|.++.|. ++.+|++||.|++|+|+.-.
T Consensus 383 ydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 383 YDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999999999997 46789999999999998654
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.5e-36 Score=245.99 Aligned_cols=304 Identities=16% Similarity=0.189 Sum_probs=240.0
Q ss_pred eEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
..+|..|++.|.+++.+|+.++++||+.|..-.||++.+++....+ .+|...|+++.|+. +|.+||||+.+|.|+||
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSH--DGTLLATGDMSGKVLVF 133 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEcc--CceEEEecCCCccEEEE
Confidence 4678899999999999999999999999999999999999987777 89999999999999 99999999999999999
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
+..++..... +...-..|.=+.|+|.+ .+|++|+.||.+.+|.+.++...+.+.. +..++++=.|.|
T Consensus 134 ~~stg~~~~~--~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~G----------h~~~ct~G~f~p 200 (399)
T KOG0296|consen 134 KVSTGGEQWK--LDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSG----------HNSPCTCGEFIP 200 (399)
T ss_pred EcccCceEEE--eecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecC----------CCCCcccccccC
Confidence 9998877655 44455677889999988 6999999999999999999877766654 566889999999
Q ss_pred CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
+ |+.++++..||+|++|++.+++.... +.........++.++..+..++.|+ ++.+++-+..++
T Consensus 201 d-GKr~~tgy~dgti~~Wn~ktg~p~~~--------------~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 201 D-GKRILTGYDDGTIIVWNPKTGQPLHK--------------ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred C-CceEEEEecCceEEEEecCCCceeEE--------------ecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 9 89999999999999999999864322 1111234566777888888877777 446666666554
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccc-eeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
+....... ........+... ..|.++.+ +..-.+.|+|+-||+|.|||
T Consensus 266 KVv~~~n~------------------------------~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iyD 314 (399)
T KOG0296|consen 266 KVVNCNNG------------------------------TVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIYD 314 (399)
T ss_pred eEEEecCC------------------------------CCccccccchhhhhhhhhccc-ccccchhhcccccceEEEEe
Confidence 33222110 001111111111 11444554 66667899999999999999
Q ss_pred cCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCc
Q 011160 372 KKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 372 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
+...++...+. |...|+.+.|-+ ..+|++++.+|+|+.||..+|++..
T Consensus 315 ~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 315 LAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred cccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEE
Confidence 98877766554 888899999998 7899999999999999999997753
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=238.23 Aligned_cols=280 Identities=17% Similarity=0.261 Sum_probs=230.9
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.|.|+|..+|+|+.|..|.||++. |.+. ....+++|++.|..+.|.+|++.|++++.|+
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~-gdce-------------------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVY-GDCE-------------------NFWVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEecc-cccc-------------------ceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence 5688999999999999999999976 3222 2367889999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
+|+.||.++|+....+ ++|...|+.+.-+. ....++.+++.||++++||++....+.. + ....+++++.|...+.
T Consensus 113 ~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t--~-~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKH-KGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKT--F-ENKYQLTAVGFKDTSD 187 (338)
T ss_pred eEEEEecccceeeehh-ccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhc--c-ccceeEEEEEeccccc
Confidence 9999999999998888 89999999998443 1345667889999999999998777654 2 2456889999999885
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 243 (492)
.+.+|+-|+.|++||++.......+.. |...|+.+..+|. +.++.+-+.|.++++||++-.-..+.
T Consensus 188 -qv~sggIdn~ikvWd~r~~d~~~~lsG----------h~DtIt~lsls~~-gs~llsnsMd~tvrvwd~rp~~p~~R-- 253 (338)
T KOG0265|consen 188 -QVISGGIDNDIKVWDLRKNDGLYTLSG----------HADTITGLSLSRY-GSFLLSNSMDNTVRVWDVRPFAPSQR-- 253 (338)
T ss_pred -ceeeccccCceeeeccccCcceEEeec----------ccCceeeEEeccC-CCccccccccceEEEEEecccCCCCc--
Confidence 679999999999999999998888775 5668999999998 78999999999999999986432111
Q ss_pred CCCCccccCCCCcCC---CcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 244 FGQPADYFCPPNLIG---DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 244 ~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
|...... ........++|+|++..+.+++ +..+++||...
T Consensus 254 --------~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~---------------------------- 297 (338)
T KOG0265|consen 254 --------CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS---------------------------- 297 (338)
T ss_pred --------eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc----------------------------
Confidence 1111111 1123467789999999999998 55799999876
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
+..+..+.||... |+++.| +|...+|.+++.|.+|++=.
T Consensus 298 ----------r~~lyklpGh~gs--vn~~~F-hp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 298 ----------RRILYKLPGHYGS--VNEVDF-HPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ----------ccEEEEcCCccee--EEEeee-cCCCcEEEEeccCceeEeec
Confidence 4667788999987 999999 99999999999999998743
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=227.04 Aligned_cols=287 Identities=19% Similarity=0.221 Sum_probs=238.6
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-ccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
+.+++|.+.|.+++|+-+|..|++|+.|+++.+|+++........ ..+|.+.|-.++|.|. ....+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEE
Confidence 567889999999999999999999999999999999877543332 3689999999999983 67889999999999999
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
|++.+++...... .... .-+.|+|+| .++++++.|..|.+.|.++.+.....+ ....++.++|+-
T Consensus 93 d~r~~k~~~~i~~--~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~-----------~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 93 DIRSGKCTARIET--KGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQ-----------FKFEVNEISWNN 157 (313)
T ss_pred EeccCcEEEEeec--cCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccceeehhc-----------ccceeeeeeecC
Confidence 9999988776332 2233 457899999 578999999999999999988776554 333578889986
Q ss_pred CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCC
Q 011160 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMG 292 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~ 292 (492)
+ +.+|+.....|.|.|......+ +...+..|.....|+.|+|+|+++|+|+.+ .+.+||++.
T Consensus 158 ~-nd~Fflt~GlG~v~ILsypsLk---------------pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E- 220 (313)
T KOG1407|consen 158 S-NDLFFLTNGLGCVEILSYPSLK---------------PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE- 220 (313)
T ss_pred C-CCEEEEecCCceEEEEeccccc---------------cccccccCCcceEEEEECCCCceEeeccccceeeccChhH-
Confidence 6 5677777778999999987655 344566788899999999999999999955 799999987
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
..+.+.+..+.-+ |..+.| +.+|++||+|++|..|-|=++
T Consensus 221 -------------------------------------LiC~R~isRldwp--VRTlSF-S~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 221 -------------------------------------LICERCISRLDWP--VRTLSF-SHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred -------------------------------------hhhheeeccccCc--eEEEEe-ccCcceeeccCccceEEeEec
Confidence 4566777777766 899998 999999999999999999999
Q ss_pred CCCeeeEEEecCCceeEEEeecCCCCeEEEeeCC---------CCEEEeccC
Q 011160 373 KGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---------SDIKILTPN 415 (492)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i~iw~~~ 415 (492)
++|..+..++ +.++-..++|+|...+||-++.| |.|+++-+.
T Consensus 261 etGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 261 ETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999887 67889999999999999988765 456666543
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-35 Score=265.10 Aligned_cols=249 Identities=18% Similarity=0.277 Sum_probs=213.2
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
..++|.|..+.++++--.|.|++||..-|.++ ..|..|.++|..++|+|++.++++||.
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli---------------------~rFdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI---------------------DRFDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHH---------------------hhhhccCCccceeeecCCCCeEEecCC
Confidence 46789999999999999999999999988888 679999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
|-.|+||+..+.+++.++ .||-.-|..+.|++ ...+|++++.|.+|+||++.+.+++.. +.+|...|.|..|+|.
T Consensus 72 DykIkVWnYk~rrclftL-~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iav--ltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAV--LTGHNHYVMCAQFHPT 146 (1202)
T ss_pred ccEEEEEecccceehhhh-ccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEE--EecCceEEEeeccCCc
Confidence 999999999999999888 79999999999999 999999999999999999999999887 9999999999999998
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeec--------C-------------CCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTC--------R-------------PIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~-------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
. .+++++|-|.+|++||+..-+....-.. . -....+| |...|+.++|+|. --+|+
T Consensus 147 E-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG--HDRGVNwaAfhpT-lpliV 222 (1202)
T KOG0292|consen 147 E-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG--HDRGVNWAAFHPT-LPLIV 222 (1202)
T ss_pred c-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc--cccccceEEecCC-cceEE
Confidence 7 4899999999999999864321111000 0 0011233 6668999999998 46999
Q ss_pred EecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 221 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
+|+.|+.|++|.....+. .......+|...|.++-|+|...+|++.+ |+.|++||+....
T Consensus 223 SG~DDRqVKlWrmnetKa-------------WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 223 SGADDRQVKLWRMNETKA-------------WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ecCCcceeeEEEeccccc-------------eeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 999999999999876441 12345567899999999999999999988 5589999998743
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.4e-34 Score=256.56 Aligned_cols=275 Identities=27% Similarity=0.431 Sum_probs=231.8
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.++|+++++++++.||.|++|++.+++.. ..+..|...+..+.|+|++++|++++.+
T Consensus 14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELL---------------------RTLKGHTGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred EEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---------------------EEEecCCcceeEEEECCCCCEEEEEcCC
Confidence 4568899999999999999999999977644 5677899999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
|.|++|++.+++.+..+ ..|...+.++.|+| ++.++++++.+|.|++|++.+.+.... +..|...|.+++|+|++
T Consensus 73 ~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 73 KTIRLWDLETGECVRTL-TGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNSVAFSPDG 147 (289)
T ss_pred CeEEEEEcCcccceEEE-eccCCcEEEEEEcC--CCCEEEEecCCCeEEEEECCCcEEEEE--eccCCCcEEEEEEcCcC
Confidence 99999999987777776 68888999999999 888888888899999999987665544 66788999999999997
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
.++++++.++.|++||+++++....+.. +...+.++.|+|+ +..+++++.++.|++||++.++...
T Consensus 148 -~~l~~~~~~~~i~i~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~-- 213 (289)
T cd00200 148 -TFVASSSQDGTIKLWDLRTGKCVATLTG----------HTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLG-- 213 (289)
T ss_pred -CEEEEEcCCCcEEEEEccccccceeEec----------CccccceEEECCC-cCEEEEecCCCcEEEEECCCCceec--
Confidence 5777777799999999998887766653 4447999999998 6788888889999999998765322
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
....+...+.++.|+|++.++++++ ++.+++|++.++
T Consensus 214 -------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~----------------------------- 251 (289)
T cd00200 214 -------------TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG----------------------------- 251 (289)
T ss_pred -------------chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-----------------------------
Confidence 2224566899999999999999988 889999998763
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
.....+..|... +.+++| +|++++|++++.||.|++|+
T Consensus 252 ---------~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ---------ECVQTLSGHTNS--VTSLAW-SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---------eeEEEccccCCc--EEEEEE-CCCCCEEEEecCCCeEEecC
Confidence 334455566654 889998 99999999999999999996
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=245.74 Aligned_cols=279 Identities=19% Similarity=0.234 Sum_probs=228.3
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.|+++|++||++++|.+.-+|.+..- .++++.+++.+|..+|..+.||||.++|++++.+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d------------------~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYD------------------VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecC------------------cceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 358999999999999999999998732 23678899999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec-CCCceEEEEEcCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-HQGRAHKLAIEPGS 162 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~ 162 (492)
.+++||+.+|.....+..+|...+.+++|.| ||..+++|+.|+.+..|++..... .. ..+ ....|.+++.++||
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~--W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GN--WEGVRDPKVHDLAITYDG 366 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hc--ccccccceeEEEEEcCCC
Confidence 9999999999998888777778999999999 999999999999999999865432 11 222 22568999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
. .+++.+.|..|++++.++......+. ...+|++++.+.+ ++++++.-.+..+.+||+...+....
T Consensus 367 k-~vl~v~~d~~i~l~~~e~~~dr~lis-----------e~~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~lv~k- 432 (519)
T KOG0293|consen 367 K-YVLLVTVDKKIRLYNREARVDRGLIS-----------EEQPITSFSISKD-GKLALVNLQDQEIHLWDLEENKLVRK- 432 (519)
T ss_pred c-EEEEEecccceeeechhhhhhhcccc-----------ccCceeEEEEcCC-CcEEEEEcccCeeEEeecchhhHHHH-
Confidence 5 67777899999999998877665554 3447999999998 78888888999999999986654322
Q ss_pred CCCCCccccCCCCcCCCc--ccceEEEEEcC-CCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDE--QVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
..+| ...+..-+|-. +..++++|+ |++|+||+..+
T Consensus 433 --------------Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s--------------------------- 471 (519)
T KOG0293|consen 433 --------------YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS--------------------------- 471 (519)
T ss_pred --------------hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC---------------------------
Confidence 1112 12334444544 458999999 55899999988
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEEeeccCeEEEEecCC
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~~dg~i~iwd~~~ 374 (492)
.+++..+.||... |++++| +|.. .++|+|++||+|+||....
T Consensus 472 -----------gkll~~LsGHs~~--vNcVsw-NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 472 -----------GKLLAVLSGHSKT--VNCVSW-NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -----------CceeEeecCCcce--eeEEec-CCCCHHHhhccCCCCeEEEecCCc
Confidence 4678889999976 999999 7754 5789999999999998753
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-35 Score=230.64 Aligned_cols=287 Identities=17% Similarity=0.225 Sum_probs=232.6
Q ss_pred eecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
.++||..+++.+.|+.+|.+|.+++.|.+..||-..+|+.+.++ .+|++.|+++...- +.+.+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~--~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDW--DSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecC--CcceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999998899999988 89999999999998 8999999999999999999
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc-----CCCcEEEEeCCCCC-------ccceeecCCCCCCCcceee
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-----EDGLVQHFDLRTGA-------ATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~ 203 (492)
.+++.+.. + ....+|..+.|+++|. +++.+. ..+.|.++|++... +...+.. +.
T Consensus 82 ~tGk~la~--~-k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t----------~~ 147 (327)
T KOG0643|consen 82 ETGKQLAT--W-KTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT----------PD 147 (327)
T ss_pred CCCcEEEE--e-ecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC----------Cc
Confidence 99998775 2 3457899999999995 545443 34679999998433 2333332 34
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~ 282 (492)
..++.+-|.|- +..|++|..+|.|.+||+++++.. ......|...|+.+.++|+..++++++ |.
T Consensus 148 skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~--------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 148 SKITSALWGPL-GETIIAGHEDGSISIYDARTGKEL--------------VDSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred cceeeeeeccc-CCEEEEecCCCcEEEEEcccCcee--------------eechhhhccccccccccCCcceEEecccCc
Confidence 57899999998 789999999999999999997532 222334778999999999999999999 55
Q ss_pred cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee
Q 011160 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
+-++||..+ ...++++.... +|++.++ +|-...++.|+
T Consensus 213 takl~D~~t--------------------------------------l~v~Kty~te~---PvN~aai-sP~~d~VilgG 250 (327)
T KOG0643|consen 213 TAKLVDVRT--------------------------------------LEVLKTYTTER---PVNTAAI-SPLLDHVILGG 250 (327)
T ss_pred cceeeeccc--------------------------------------eeeEEEeeecc---cccceec-ccccceEEecC
Confidence 799999987 45556665544 3888888 89877777665
Q ss_pred ccCe--------------EEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 363 DCGR--------------IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 363 ~dg~--------------i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
.... -++|++-..+.+..+++|-++|++++|+|+|+..+||+.||.|++.-++.
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 3221 22333333455678899999999999999999999999999999986654
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=223.88 Aligned_cols=273 Identities=17% Similarity=0.207 Sum_probs=226.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
-|-|+-+|++.+|++.|.+||+|+...|.++ +++.+|...|..++.+.|+..+++|+.|
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~li---------------------ktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALI---------------------KTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeeccccccee---------------------eeecCCCceeeeccccccccccccCCCC
Confidence 3568999999999999999999999988887 8899999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
+.|.+||+.+|+..+.+ .+|.+.|+.++|+. +...+++|+.|..+++||-++....+.+.+....+.|.++....
T Consensus 81 k~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-- 155 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-- 155 (307)
T ss_pred ceEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--
Confidence 99999999999999999 89999999999998 89999999999999999999887777677888889999999875
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
+.+++|+.||+++.||++.+....-+. ..+|++++|+++ ++..+.++.|+++++.|-.++++++..
T Consensus 156 -heIvaGS~DGtvRtydiR~G~l~sDy~------------g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 156 -HEIVAGSVDGTVRTYDIRKGTLSSDYF------------GHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred -cEEEeeccCCcEEEEEeecceeehhhc------------CCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh
Confidence 568999999999999999998765443 337999999998 789999999999999999999876542
Q ss_pred CCCCCccccCCCCcCCCccc--ceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQV--GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
.+|.. .-...+++.....+++|+ ||.+++||+...
T Consensus 222 ---------------kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--------------------------- 259 (307)
T KOG0316|consen 222 ---------------KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--------------------------- 259 (307)
T ss_pred ---------------cccccceeeeeeeecccceeEEeccCCceEEEEEeccc---------------------------
Confidence 22322 233456667778899999 678999999864
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
..+..+..+.. ..+.++.+ +|.-.-++++. ++.+.+|-
T Consensus 260 -----------~~~sk~~~~~~-v~v~dl~~-hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 260 -----------TQISKLSVVST-VIVTDLSC-HPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred -----------eeeeeeccCCc-eeEEeeec-ccCccceeEec-CCceecee
Confidence 23333333332 23788888 88877676665 34456664
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=245.43 Aligned_cols=306 Identities=16% Similarity=0.210 Sum_probs=237.3
Q ss_pred eeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce----eeeeccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
.....|++|+..|.++++.|.|..|++|+.|.+|++||+..... ...+.......|.+++|++ .+..|++.+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~--Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV--TGDQILVVSGS 235 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC--CCCeEEEEecC
Confidence 44567889999999999999999999999999999999875432 2223334455899999999 88888888888
Q ss_pred CcEEEEecccCCeeee----------EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCC
Q 011160 128 GQVRHAQILERGGVET----------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDD 196 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~----------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 196 (492)
...+|+|-........ ..-.+|...++|.+|+|.....|++++.||++++||+...+. .+.+......
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~- 314 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG- 314 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC-
Confidence 8999999654332211 123579999999999999988999999999999999987653 3333322211
Q ss_pred CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCccc--ceEEEEEcCCCC
Q 011160 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV--GITGLAFSDQSE 274 (492)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~ 274 (492)
+ ....++.++|+|+ +.+||+|+.||.|.+|+.+...... ...+...|.. .|+|++||++|+
T Consensus 315 --g--~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p------------~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 315 --G--KRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRP------------VMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred --C--cccCceeeecCCC-cchhhhcccCCceeeeecCCccccc------------ceEeeeccCCCCceeEEEeccccc
Confidence 1 4457899999998 7889999999999999986543221 1223344555 899999999999
Q ss_pred eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC
Q 011160 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (492)
Q Consensus 275 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 353 (492)
+|++-+ |+++++||++.-+ +++....+-.....-+.++| ||
T Consensus 378 ~LlSRg~D~tLKvWDLrq~k-------------------------------------kpL~~~tgL~t~~~~tdc~F-SP 419 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFK-------------------------------------KPLNVRTGLPTPFPGTDCCF-SP 419 (641)
T ss_pred hhhhccCCCceeeeeccccc-------------------------------------cchhhhcCCCccCCCCcccc-CC
Confidence 999987 7799999998742 33333333333333567777 99
Q ss_pred CCcEEEEeec------cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEe-ccC
Q 011160 354 KCEYVVSGSD------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL-TPN 415 (492)
Q Consensus 354 ~g~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw-~~~ 415 (492)
+.++|++|.. .|++.+||..+.+.+..+.-....|..+.|+|.-+.|..++.||+++|| |..
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 9999999863 4789999999999999988778889999999999999999999999986 443
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=230.93 Aligned_cols=275 Identities=18% Similarity=0.270 Sum_probs=237.1
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEE
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (492)
.|+|=+|++++.||.-.+-+-+||..+ .+|.||++.|++..++.+...-|+++.|-+-+
T Consensus 26 tp~g~flisa~kd~~pmlr~g~tgdwi---------------------gtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGDTGDWI---------------------GTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred CCCceEEEEeccCCCchhccCCCCCcE---------------------EeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 378889999999999999999999998 78999999999999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEE
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 166 (492)
|||.-+|..+..+ .|..-|.+++|+. |.++|++|+.+..++|+|++..+... ..+.+|++.|..+.|.... +.|
T Consensus 85 vw~a~tgdelhsf--~hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD-~~i 158 (334)
T KOG0278|consen 85 VWDAVTGDELHSF--EHKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHED-KCI 158 (334)
T ss_pred hhhhhhhhhhhhh--hhhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccC-ceE
Confidence 9999999999998 6888999999999 99999999999999999998766544 3488999999999998877 688
Q ss_pred EEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCC
Q 011160 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (492)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 246 (492)
++++.|++|++||.+++..++.+. ...+|+++.++++ +.+| +....+.|.+||..+..++....+
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~-----------~~s~VtSlEvs~d-G~il-Tia~gssV~Fwdaksf~~lKs~k~-- 223 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLE-----------FNSPVTSLEVSQD-GRIL-TIAYGSSVKFWDAKSFGLLKSYKM-- 223 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEe-----------cCCCCcceeeccC-CCEE-EEecCceeEEeccccccceeeccC--
Confidence 998999999999999999998887 4457999999998 5444 555678899999998876554332
Q ss_pred CccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCC
Q 011160 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (492)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (492)
...|.+..++|+...+++|++ ..++.||..++.
T Consensus 224 --------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge-------------------------------- 257 (334)
T KOG0278|consen 224 --------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE-------------------------------- 257 (334)
T ss_pred --------------ccccccccccCCCceEEecCcceEEEEEeccCCc--------------------------------
Confidence 356888999999888888884 489999999863
Q ss_pred CCccccCCcee-eccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeee
Q 011160 326 NTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (492)
Q Consensus 326 ~~~~~~~~~~~-~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~ 378 (492)
.+..+ ++|.++ |.++.| +|+|...|+|++||+|+||.+..++..
T Consensus 258 ------Ei~~~nkgh~gp--VhcVrF-SPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 ------EIGSYNKGHFGP--VHCVRF-SPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ------eeeecccCCCCc--eEEEEE-CCCCceeeccCCCceEEEEEecCCCch
Confidence 33333 788887 999999 999999999999999999998766543
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=245.76 Aligned_cols=286 Identities=20% Similarity=0.281 Sum_probs=234.8
Q ss_pred eeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.+ +.+..++|+++.|.+ ++..+++++.|+.+
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t-LaGs~g~it~~d~d~--~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST-LAGSLGNITSIDFDS--DNKHVIAASNDKNL 243 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh-hhccCCCcceeeecC--CCceEEeecCCCce
Confidence 445677899999999999998899999999999999987655 3333 367788999999999 99999999999999
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
++|++...+.... +.+|++.|+++.|.... ..+++|+.|.+|++||+....+...+. ....++.|+
T Consensus 244 r~Wnvd~~r~~~T--LsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-----------~~S~cnDI~ 309 (459)
T KOG0288|consen 244 RLWNVDSLRLRHT--LSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-----------PGSQCNDIV 309 (459)
T ss_pred eeeeccchhhhhh--hcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-----------ccccccceE
Confidence 9999988776665 88999999999998876 348999999999999999987776654 333566777
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (492)
.++ ..+++|..|++|++||.+......... -.+.|+++..++++..|.+++ ++.+.+.|+
T Consensus 310 ~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~----------------~gg~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 310 CSI---SDVISGHFDKKVRFWDIRSADKTRSVP----------------LGGRVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred ecc---eeeeecccccceEEEeccCCceeeEee----------------cCcceeeEeeccCCeEEeeecCCCceeeeec
Confidence 663 588999999999999999876433211 235899999999998887777 789999999
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec--cccceeeeeEEeecCCCcEEEEeeccCeE
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~s~~g~~l~sg~~dg~i 367 (492)
++.... .++.. .......+.+.| ||++.|+|+|+.||.|
T Consensus 371 Rt~eI~--------------------------------------~~~sA~g~k~asDwtrvvf-Spd~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 371 RTKEIR--------------------------------------QTFSAEGFKCASDWTRVVF-SPDGSYVAAGSADGSV 411 (459)
T ss_pred ccccEE--------------------------------------EEeeccccccccccceeEE-CCCCceeeeccCCCcE
Confidence 884322 22221 111112677888 9999999999999999
Q ss_pred EEEecCCCeeeEEEecCCc--eeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 368 FIWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 412 ~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 412 YIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999988875443 599999999999999999999999994
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=240.34 Aligned_cols=288 Identities=16% Similarity=0.204 Sum_probs=238.9
Q ss_pred cceEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC
Q 011160 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 61 ~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 139 (492)
...|.+++|+|... -+|+.+. -.+.||+..+......+ ......++++.|.. ||.+|++|...|.|+|+|+.+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeec--CCeEEEccCCcCcEEEeccccHH
Confidence 46899999999643 2444433 47999998887776666 56677899999998 99999999999999999965533
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (492)
.+. .+.+|+.+|..+.|+|.+..+|++|+.|+.+++||+.+......+.. |...|.|.+|+|.+++++
T Consensus 102 iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~----------htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 102 ILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG----------HTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC----------CcceeEeeccccCCCeEE
Confidence 333 38899999999999999888999999999999999999885323332 666899999999988899
Q ss_pred EEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 299 (492)
++|+.||.|++||++... .....-.|..+|..+.+-|.|.+|++++.+.+++||+.++
T Consensus 170 vtGsYDg~vrl~DtR~~~---------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G------- 227 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLT---------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG------- 227 (487)
T ss_pred EecCCCceEEEEEeccCC---------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC-------
Confidence 999999999999999863 1223334788999999999999999999999999999876
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeE
Q 011160 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (492)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~ 379 (492)
.+.+..+..|... |+|+++ ..++..|++|+-|+.|++||+.+.+.+.
T Consensus 228 ------------------------------~qll~~~~~H~Kt--VTcL~l-~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 228 ------------------------------GQLLTSMFNHNKT--VTCLRL-ASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred ------------------------------ceehhhhhcccce--EEEEEe-ecCCceEeecccccceEEEEccceEEEE
Confidence 4445555556664 999998 7899999999999999999999999998
Q ss_pred EEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 380 VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 380 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
.+. ..++|.+++.+|+++.++.|..+|.+.+=+....+..
T Consensus 275 s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 275 SWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred eee-cccceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence 887 5688999999999999999999999888766555443
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-34 Score=259.62 Aligned_cols=259 Identities=20% Similarity=0.313 Sum_probs=208.7
Q ss_pred eeeEeec-CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCC-------------------------------------
Q 011160 52 GIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE------------------------------------- 93 (492)
Q Consensus 52 ~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~------------------------------------- 93 (492)
...+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+...
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4556667 89999999999999999999999999999987550
Q ss_pred -----------------------ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC
Q 011160 94 -----------------------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 94 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
+++.. +.||.+.|..+.|+ ...+|++++.|.+|++|++....++.. ..|.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~---F~Hn 409 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKV---FSHN 409 (712)
T ss_pred cccccccCCccccCCCccccccccchhh-hhccchhheecccc---cCCeeEeccccccEEeecCCCcceeeE---EecC
Confidence 00111 36899999999999 578999999999999999988877764 4599
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEE
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i 230 (492)
+.|+||+|+|-..++|++|+-||.|+||++...+...-..++ .-|++++|.|+ |+..++|+.+|.+++
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------~lITAvcy~Pd-Gk~avIGt~~G~C~f 477 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-----------DLITAVCYSPD-GKGAVIGTFNGYCRF 477 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-----------hhheeEEeccC-CceEEEEEeccEEEE
Confidence 999999999988889999999999999999988776555432 35999999999 789999999999999
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC--CeeEeecCCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
|+....++.....+.... .. ...+. .|+++.|.|.. ++|++..|..|+|||.+.
T Consensus 478 Y~t~~lk~~~~~~I~~~~-----~K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~----------------- 533 (712)
T KOG0283|consen 478 YDTEGLKLVSDFHIRLHN-----KK-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD----------------- 533 (712)
T ss_pred EEccCCeEEEeeeEeecc-----Cc-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-----------------
Confidence 999988765543321110 00 11122 79999999854 377777788999999976
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~ 375 (492)
...+..|+|..+...-....| +.||++|+++++|..|+||++...
T Consensus 534 ---------------------~~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 534 ---------------------KDLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ---------------------hhhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEEEeCCCC
Confidence 456777887776554456676 899999999999999999998443
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=229.21 Aligned_cols=296 Identities=13% Similarity=0.210 Sum_probs=229.3
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCC-----------------CceeeeeccCcCcceEEEEecCCCC
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-----------------ERVKLSFHSGHNDNVFQAKIMPFTD 117 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~ 117 (492)
..+..|++++.+.+|+|||.++|||+.|..|+|.|++. +.++.+.+-.|...|+++.|+| .
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP--r 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP--R 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc--h
Confidence 45678999999999999999999999999999999862 1123333367999999999999 9
Q ss_pred CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC
Q 011160 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (492)
Q Consensus 118 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (492)
...|++++.|++|+++|+................+|.++.|+|.|. +|++|....++++||+++-++...-. +.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcfvsan--Pd--- 257 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSAN--PD--- 257 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecC--cc---
Confidence 9999999999999999997654433322334567899999999994 78999999999999999987653322 11
Q ss_pred CcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCc-ccceEEEEEcCCCCee
Q 011160 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELL 276 (492)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l 276 (492)
..|...|+++.+++. +++.++++.||.|++||--.++. ...+...| ...|.+..|..++++|
T Consensus 258 --~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rC--------------v~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 258 --DQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRC--------------VRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred --cccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHH--------------HHHHHhhcCCceeeeEEEccCCeEE
Confidence 116778999999998 78999999999999999877763 33333333 4679999999999999
Q ss_pred Eeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccc---ceeeeeEEeec
Q 011160 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN---CVTVKGVNFFG 352 (492)
Q Consensus 277 ~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~s 352 (492)
.+.+ |..+++|.+.++.. +..+.|... ...-+...| .
T Consensus 321 LsSG~DS~vkLWEi~t~R~--------------------------------------l~~YtGAg~tgrq~~rtqAvF-N 361 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRM--------------------------------------LKEYTGAGTTGRQKHRTQAVF-N 361 (430)
T ss_pred eecCCcceeeeeeecCCce--------------------------------------EEEEecCCcccchhhhhhhhh-c
Confidence 9888 55799999998643 333333210 000122333 5
Q ss_pred CCCcEEEEeec-cCeEEEEecCCCeeeEEE-ecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 353 PKCEYVVSGSD-CGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 353 ~~g~~l~sg~~-dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
....|++.-.+ .+.+.-||..++..+..+ -+|.+.+..+.-||.+.-+++++.|..+++|--
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 66666665443 467899999988776655 479999999999999999999999999999954
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-35 Score=238.84 Aligned_cols=291 Identities=19% Similarity=0.275 Sum_probs=236.5
Q ss_pred eeeEeecCccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
+.+..|.||...|.|++=+|.. ..+++|+.||.|+|||+...++...+ ..|.+.|..+++. ...+++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~----~~~~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVT----QTSFFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEec----ccceEEecCCcce
Confidence 4456778999999999999977 78999999999999999998888888 8999999999995 3778999999999
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
+.|.+... ... .+. ....+..|.-+..+ ..+++||. .|.|||.+...++..+.. ....|.++.
T Consensus 132 K~wk~~~~-p~~--til-g~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smsw----------G~Dti~svk 194 (433)
T KOG0268|consen 132 KQWKIDGP-PLH--TIL-GKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSW----------GADSISSVK 194 (433)
T ss_pred eeeeccCC-cce--eee-cccccccccccccc-ccccccCc--eeeecccccCCccceeec----------CCCceeEEe
Confidence 99998663 221 232 23456677766666 57888886 599999998888887765 334689999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEec
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQ 289 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~ 289 (492)
|+|-...+|++++.|+.|.+||+++...+....+ ...-+.++|+|.+-.+++++++ +++.||+
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~----------------~mRTN~IswnPeafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL----------------TMRTNTICWNPEAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeee----------------eccccceecCccccceeeccccccceehhh
Confidence 9998778899999999999999999875443221 2345679999977777777755 7999999
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEE
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~i 369 (492)
+.. ..++..+.+|.+. |.++.| ||.|+-+++||.|.+|+|
T Consensus 259 R~l-------------------------------------~~p~~v~~dhvsA--V~dVdf-sptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 259 RNL-------------------------------------SRPLNVHKDHVSA--VMDVDF-SPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred hhh-------------------------------------cccchhhccccee--EEEecc-CCCcchhccccccceEEE
Confidence 874 4567788889887 999999 999999999999999999
Q ss_pred EecCCCeeeEEEec-CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 370 WKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 370 wd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
|.+..+.....+.. ....|.++.||.|.++++|||.|+.|++|.-...+..
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 99987765443321 2246999999999999999999999999988765544
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-32 Score=275.50 Aligned_cols=302 Identities=12% Similarity=0.106 Sum_probs=220.1
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC-CCCEEEEecC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSD 81 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~ 81 (492)
.+.|+|+++++|+|+.|+.|+||+..+...... + .. .....+. +...|.+++|+| ++.+|++++.
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----------~--~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----------D--IH-YPVVELA-SRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCccccccc----------c--cc-cceEEec-ccCceeeEEeccCCCCEEEEEeC
Confidence 357889999999999999999999763211000 0 00 0112233 346899999987 4789999999
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
||+|+|||+.+++.+..+ .+|...|++++|+|. ++.+|++|+.||.|++||+.++..+.. +.. ...|.++.|++.
T Consensus 554 Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~-~~~v~~v~~~~~ 628 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQGVSIGT--IKT-KANICCVQFPSE 628 (793)
T ss_pred CCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCCCcEEEE--Eec-CCCeEEEEEeCC
Confidence 999999999998887777 789999999999962 678999999999999999988766554 443 367999999654
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
...+|++|+.||.|++||+++... ...+.. |...|.++.|.+ +..|++++.|+.|++||++......
T Consensus 629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~~----------h~~~V~~v~f~~--~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIG----------HSKTVSYVRFVD--SSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceEecC----------CCCCEEEEEEeC--CCEEEEEECCCEEEEEeCCCCcccc
Confidence 447899999999999999987652 333322 556799999974 5789999999999999997542100
Q ss_pred CCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
...+.....+|...+.+++|+|++.+|++++ ++.+++|+.........+...
T Consensus 697 ---------~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~------------------ 749 (793)
T PLN00181 697 ---------NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK------------------ 749 (793)
T ss_pred ---------CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc------------------
Confidence 0012233456778899999999999999998 668999997653211110000
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
... .........+.. .|.+++| +|++.+|++|+.+|.|+||++
T Consensus 750 ----~~~---~~~~~~~~~~~~--~V~~v~w-s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 750 ----TID---PVSGLEVDDASQ--FISSVCW-RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ----cCC---cccccccCCCCc--EEEEEEE-cCCCCeEEEecCCCcEEEEec
Confidence 000 000001122222 4899999 999999999999999999986
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-33 Score=220.28 Aligned_cols=288 Identities=18% Similarity=0.177 Sum_probs=226.6
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.|+.+|.+|.+++.|.++.||-..+|+.+ .++.||++.|+|+..+.+.++|+||+.|.
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerl---------------------Gty~GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERL---------------------GTYDGHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCcee---------------------eeecCCCceEEEEEecCCcceeeeccccc
Confidence 568999999999999999999998889887 78999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC-----CCcEEEEecccCC-----eeeeEEeecCCCce
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILERG-----GVETKLLGKHQGRA 153 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~v~iw~~~~~~-----~~~~~~~~~~~~~v 153 (492)
++++||+++|+.+..+ ....+|..+.|++ +|++++.+.. .+.|.+++++... ..+...+..+...+
T Consensus 75 t~kLWDv~tGk~la~~--k~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATW--KTNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred eeEEEEcCCCcEEEEe--ecCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 9999999999999888 3567899999999 8888776653 4789999998432 11123366778999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccc-eeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
+.+.|.|-+ ..|++|..+|.|.+||+++++... .... |...|+.++++|+ ..++++++.|.+-++||
T Consensus 151 t~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~----------h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 151 TSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEE----------HSSKINDLQFSRD-RTYFITGSKDTTAKLVD 218 (327)
T ss_pred eeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhh----------hccccccccccCC-cceEEecccCccceeee
Confidence 999999999 589999999999999999985432 2222 5668999999998 78999999999999999
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec--CCCCCCCCCCCCCCCccccc
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ--DMGLGPNPPPSSPVSTRSEA 309 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~ 309 (492)
.++.+...+.. ...+|++.+++|-...++.++ .+..-+=.. +.++-...+
T Consensus 219 ~~tl~v~Kty~----------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF----------- 271 (327)
T KOG0643|consen 219 VRTLEVLKTYT----------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF----------- 271 (327)
T ss_pred ccceeeEEEee----------------ecccccceecccccceEEecCCceeeeeeeecccccchhhhH-----------
Confidence 99887554322 256899999999877766665 332222211 111100000
Q ss_pred cccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
-...-.+.+..+++|-++ |++++| +|+|+..++|++||.|++.-..
T Consensus 272 ---------------yh~i~eEEigrvkGHFGP--INsvAf-hPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 272 ---------------YHLIFEEEIGRVKGHFGP--INSVAF-HPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ---------------HHHHHHHHhccccccccC--cceeEE-CCCCcccccCCCCceEEEEEec
Confidence 000013455678899987 999999 9999999999999999998654
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-33 Score=218.68 Aligned_cols=283 Identities=18% Similarity=0.238 Sum_probs=225.7
Q ss_pred EEEEEcCC-CCEEEEe-------cCCCeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 65 NTVSFNTD-GDILISG-------SDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 65 ~~~~~s~~-~~~l~s~-------~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
.++.|||- .++||.+ ...|++.|-++..+..+..+. -.-...+..++|++. ..+.+++++.||.+++||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEecc
Confidence 47889982 2333332 235889999986444333331 135678999999993 5678889999999999996
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
..... +...++.|...|.++.|++.....+++++.|++|++|+...++.+.++.. +...|...+|+|..
T Consensus 91 ~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g----------h~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 91 TMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG----------HNSCIYQAAFSPHI 159 (311)
T ss_pred CCCCc-chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC----------CccEEEEEecCCCC
Confidence 54433 34458899999999999998777889999999999999999998888765 66689999999998
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeec-CCcEEEEecCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~i~~~d~~~~~ 293 (492)
++++++++.|+++++||++.... ...+..|...|.++.|+.-. ..|++++ |+.|+.||++.-
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk---------------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~- 223 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGK---------------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL- 223 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCc---------------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-
Confidence 99999999999999999986431 12245577899999999854 5677777 668999999875
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEEeeccCeEEEEec
Q 011160 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~~dg~i~iwd~ 372 (492)
+.++..+.+|.-. |..+.| ||.. .+||+++.|-+++|||.
T Consensus 224 ------------------------------------r~pl~eL~gh~~A--VRkvk~-Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 224 ------------------------------------RTPLFELNGHGLA--VRKVKF-SPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred ------------------------------------cccceeecCCceE--EEEEec-CcchhhHhhhccccceEEeccc
Confidence 4567778888876 999999 8865 58899999999999998
Q ss_pred CCC-eeeEEEecCCceeEEEeecCC-CCeEEEeeCCCCEEEecc
Q 011160 373 KGG-ELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKILTP 414 (492)
Q Consensus 373 ~~~-~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~ 414 (492)
..+ .++.+...|..-|..+.||+- ..++|+++.|..++||+.
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 755 455667788888999999985 558999999999999986
No 69
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=249.21 Aligned_cols=372 Identities=14% Similarity=0.183 Sum_probs=268.5
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~ 90 (492)
+.++.|+.+|.+.|||+.+++++ .+++++...|+++.=+|--..+|.|..+|+|.|+++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v---------------------~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl 231 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVV---------------------YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL 231 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEE---------------------EEecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence 45899999999999999999988 889999999999999999999999999999999999
Q ss_pred CCCceeeeeccCcCcceEEEEecCCCCCce-EEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEE
Q 011160 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (492)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 169 (492)
+.++.+.+|. .-.++|++++|.. ||.. +++|+..|.+.+||+...+.+. .....|.+.|....|.|..+ +++++
T Consensus 232 K~dkil~sFk-~d~g~VtslSFrt--DG~p~las~~~~G~m~~wDLe~kkl~~-v~~nah~~sv~~~~fl~~ep-Vl~ta 306 (910)
T KOG1539|consen 232 KFDKILMSFK-QDWGRVTSLSFRT--DGNPLLASGRSNGDMAFWDLEKKKLIN-VTRNAHYGSVTGATFLPGEP-VLVTA 306 (910)
T ss_pred ccCcEEEEEE-ccccceeEEEecc--CCCeeEEeccCCceEEEEEcCCCeeee-eeeccccCCcccceecCCCc-eEeec
Confidence 9999999993 2258999999998 8765 5566677999999997765544 34568989999999999885 89999
Q ss_pred cCCCcEEEEeCCCCCccc-eeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCC----
Q 011160 170 GEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF---- 244 (492)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---- 244 (492)
+.|..+++|=..++.-.. .++.. .| |..+..++.|.-.++..+.+++.|++.+.+++......+.+..
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R-----~G--Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~ 379 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSR-----GG--HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK 379 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeec-----cC--CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence 999999988766554322 12211 23 6668899999866689999999999999888754322111100
Q ss_pred --------C------C-Cccc-------------------------------cCC------CCcCCCcccceEEEEEcCC
Q 011160 245 --------G------Q-PADY-------------------------------FCP------PNLIGDEQVGITGLAFSDQ 272 (492)
Q Consensus 245 --------~------~-~~~~-------------------------------~~~------~~~~~~~~~~i~~~~~s~~ 272 (492)
. . ++.. ... ..........+++++.++.
T Consensus 380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C 459 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC 459 (910)
T ss_pred cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence 0 0 0000 000 0000112356788899999
Q ss_pred CCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee
Q 011160 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (492)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (492)
|++.+.|+ .|.|-+|++..+.....+.. -..|... |++++.
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----------------------------------~~ah~~~--V~gla~- 501 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----------------------------------SPAHKGE--VTGLAV- 501 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeeccccc-----------------------------------CccccCc--eeEEEe-
Confidence 99888777 67899999988754433321 1234433 556655
Q ss_pred cCCCcEEEEeeccCeEEEEecC-----------------------------------------CCeeeEEEecCCceeEE
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKK-----------------------------------------GGELIRVIEADRHVVNC 390 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~-----------------------------------------~~~~~~~~~~h~~~v~~ 390 (492)
+.-++.+++++.+|.+++||.. +.+.++.+.+|.+.|++
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 5555566666666666666653 34444567789999999
Q ss_pred EeecCCCCeEEEeeCCCCEEEeccCCCCCCcccCccccccc---ccccccccccCchhhHHHHhhh
Q 011160 391 IEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQFKP---KATRWMHHVLSPEDLMMQLFSL 453 (492)
Q Consensus 391 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 453 (492)
++|||||++|++++.|++|++||+.++.+............ .+.+.+.+.++.+...+.+|..
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 99999999999999999999999999987654333222222 2666666666666555555543
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=253.20 Aligned_cols=271 Identities=21% Similarity=0.344 Sum_probs=233.7
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
...++++++.++++++|+..++..+. ..+.||.+.|.+++|..-+.+|++|+.|.++++|
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~i~--------------------~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYLIL--------------------TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred ecCeEEecCCCceeEEeecccceEEE--------------------eeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 36789999999999999999888772 3499999999999998778999999999999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 168 (492)
|+.+|.+...+ .+|.+.|.++... ...+++|+.|.+|++|++.++..+.. +.+|..+|+++.++ + .++++
T Consensus 277 d~~sg~C~~~l-~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~--~-~~lvs 346 (537)
T KOG0274|consen 277 DCSTGECTHSL-QGHTSSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLD--E-PLLVS 346 (537)
T ss_pred ecCCCcEEEEe-cCCCceEEEEEcc----CceEeeccCCceEEEEeccCcceEEE--eccccccEEEEEec--C-CEEEE
Confidence 99999999988 6999999999884 56788899999999999998887765 67799999999998 4 48999
Q ss_pred EcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCc
Q 011160 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (492)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 248 (492)
|+.|++|++||+.+++++..+.. |...|.++.+.+. ..+++|+.|++|++||+++..
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~g----------H~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~----------- 403 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSG----------HTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR----------- 403 (537)
T ss_pred EecCceEEEEEhhhceeeeeecC----------CcceEEEEEecCc--ceEEeeeeccceEeecCCchh-----------
Confidence 99999999999999999988875 6668999988763 689999999999999998751
Q ss_pred cccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCc
Q 011160 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (492)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (492)
T Consensus 404 -------------------------------------------------------------------------------- 403 (537)
T KOG0274|consen 404 -------------------------------------------------------------------------------- 403 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEec-CCceeEEEeecCCCCeEEEeeCCC
Q 011160 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIES 407 (492)
Q Consensus 329 ~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg 407 (492)
+++.++.+|..- +..+.+ .+++|++++.|++|++||..++++++.+.+ |.+.|..+++. ...+++++.|+
T Consensus 404 --~c~~tl~~h~~~--v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~ 474 (537)
T KOG0274|consen 404 --KCIHTLQGHTSL--VSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG 474 (537)
T ss_pred --hhhhhhcCCccc--cccccc---ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC
Confidence 123445555554 445443 578999999999999999999999999998 67889999886 56788899999
Q ss_pred CEEEeccCCCCCCc
Q 011160 408 DIKILTPNAADRAT 421 (492)
Q Consensus 408 ~i~iw~~~~~~~~~ 421 (492)
++++||+.++++..
T Consensus 475 ~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 475 SVKLWDLRSGTLIR 488 (537)
T ss_pred eeEEEecccCchhh
Confidence 99999999987665
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-32 Score=239.72 Aligned_cols=272 Identities=19% Similarity=0.264 Sum_probs=229.4
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
....||+|. ...|++|+..+|++. .....+...|+++.|+++|.+||+|..+|.|.||
T Consensus 187 s~n~laVal-g~~vylW~~~s~~v~---------------------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iw 244 (484)
T KOG0305|consen 187 SANVLAVAL-GQSVYLWSASSGSVT---------------------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIW 244 (484)
T ss_pred cCCeEEEEe-cceEEEEecCCCceE---------------------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEE
Confidence 345667766 447999999988855 2233348899999999999999999999999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 168 (492)
|..+.+.+..+...|...|-+++|. +..+.+|+.++.|..+|++..+.... .+.+|...|..+.|++++ .++++
T Consensus 245 D~~~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~-~~lAS 318 (484)
T KOG0305|consen 245 DVKEQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDG-NQLAS 318 (484)
T ss_pred ehhhccccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCC-Ceecc
Confidence 9999888888733399999999994 67899999999999999998876655 588999999999999999 68999
Q ss_pred EcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec--CCCeEEEEecccccccCCCCCCC
Q 011160 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDFGQ 246 (492)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~ 246 (492)
|+.|+.+.|||.....+...+.. |...|.+++|+|....+||+|+ .|+.|++|+..++..+....
T Consensus 319 GgnDN~~~Iwd~~~~~p~~~~~~----------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--- 385 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLSPEPKFTFTE----------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--- 385 (484)
T ss_pred CCCccceEeccCCCccccEEEec----------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc---
Confidence 99999999999977776666654 7779999999999888999875 79999999999887554321
Q ss_pred CccccCCCCcCCCcccceEEEEEcCCCCeeEeec---CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
....|.+|.|++..+-|+++. ++.|.||+..+
T Consensus 386 -------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-------------------------------- 420 (484)
T KOG0305|consen 386 -------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-------------------------------- 420 (484)
T ss_pred -------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--------------------------------
Confidence 257899999999886555543 45799999877
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~ 375 (492)
...+..+.+|... |..+++ +|||..+++|+.|.++++|++-..
T Consensus 421 ------~~~~~~l~gH~~R--Vl~la~-SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 ------MKLVAELLGHTSR--VLYLAL-SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ------cceeeeecCCcce--eEEEEE-CCCCCEEEEecccCcEEeccccCC
Confidence 4677889999997 999998 999999999999999999998664
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=215.96 Aligned_cols=273 Identities=17% Similarity=0.207 Sum_probs=228.1
Q ss_pred cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeC
Q 011160 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (492)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~ 180 (492)
.+|...+.+++|+. +|..|++|+.|+++.+|++............+|.+.|-.++|+|..+.+|++++.|.+|++||+
T Consensus 17 ~~~~~~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhhcceEEEEcc--cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 67899999999999 9999999999999999999877655555678999999999999999899999999999999999
Q ss_pred CCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCc
Q 011160 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (492)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (492)
+.+++...+.. ...-.-+.|+|+ +.+++.++.|..|.+.|.++.+...... .
T Consensus 95 r~~k~~~~i~~-----------~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~----------------~ 146 (313)
T KOG1407|consen 95 RSGKCTARIET-----------KGENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQ----------------F 146 (313)
T ss_pred ccCcEEEEeec-----------cCcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhc----------------c
Confidence 99999887763 223456889998 7899999999999999999887543321 2
Q ss_pred ccceEEEEEcCCCCeeE-eecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc
Q 011160 261 QVGITGLAFSDQSELLV-SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (492)
Q Consensus 261 ~~~i~~~~~s~~~~~l~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (492)
...+..++|+.++.+++ +.+.|+|.|..... .+++..+++|
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--------------------------------------Lkpv~si~AH 188 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--------------------------------------LKPVQSIKAH 188 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCceEEEEeccc--------------------------------------cccccccccC
Confidence 44677888887666554 44468888887765 5778889999
Q ss_pred ccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 340 ~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
... ..++.| +|+|+|+|+|+.|..+.+||+...-+++.+.-+.-+|..+.||.||++||+++.|..|-|=++++|..
T Consensus 189 ~sn--CicI~f-~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 189 PSN--CICIEF-DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred Ccc--eEEEEE-CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 876 788998 99999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CcccCcccccccccccccccccCchhhHHHHhh
Q 011160 420 ATLPTNIEQFKPKATRWMHHVLSPEDLMMQLFS 452 (492)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (492)
..-.. +.+..+.|+..+...++.+.
T Consensus 266 ~~eI~--------~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 266 VWEIP--------CEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred EEEee--------ccCCceeEEecCCCceeeEE
Confidence 43222 35667777766665555543
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=225.34 Aligned_cols=283 Identities=15% Similarity=0.261 Sum_probs=239.7
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 141 (492)
..|+++...|....++||+.|..+.++|...++.+..+ .||...|+.+.|+| +...+++++.|..|+||........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHK--DLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEecc--chhheeecCCcceEEeeccccccCc
Confidence 46888888888789999999999999999988887777 89999999999999 9999999999999999999877655
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (492)
.. ...|..+|+.+..+|.| .+|++++.|++..+.|++++..+....... ....+++.+|+|| |.+|.+
T Consensus 297 ~~--~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~--------s~v~~ts~~fHpD-gLifgt 364 (506)
T KOG0289|consen 297 TS--SRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDET--------SDVEYTSAAFHPD-GLIFGT 364 (506)
T ss_pred cc--cccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeecc--------ccceeEEeeEcCC-ceEEec
Confidence 44 77899999999999999 588999999999999999998876654321 3346899999999 799999
Q ss_pred ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCCCCCCCC
Q 011160 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 222 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~ 300 (492)
|..||.|+|||+..+.. ...+.+|.++|..++|+.+|.+|+++.++ .|++||++..+
T Consensus 365 gt~d~~vkiwdlks~~~---------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------- 422 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTN---------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------- 422 (506)
T ss_pred cCCCceEEEEEcCCccc---------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-------
Confidence 99999999999988752 23455689999999999999999999966 59999998742
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec--CCCeee
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELI 378 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~--~~~~~~ 378 (492)
..+++.-.... .+.++.| ++.|.+|+.++.+=.|++++- +++.++
T Consensus 423 -------------------------------n~kt~~l~~~~-~v~s~~f-D~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 423 -------------------------------NFKTIQLDEKK-EVNSLSF-DQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred -------------------------------ccceeeccccc-cceeEEE-cCCCCeEEeecceeEEEEEecccccceee
Confidence 33333333322 3789998 999999999988777777763 366778
Q ss_pred EEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 379 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 888889989999999999999999999999998865
No 74
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-33 Score=227.36 Aligned_cols=276 Identities=21% Similarity=0.325 Sum_probs=223.0
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+.-..+++|+.||.|+|||+.+-.+. .++++|.+.|..|++.. ..+++++.|++|+.
T Consensus 77 ~~ls~~aSGs~DG~VkiWnlsqR~~~---------------------~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 77 NKLSTVASGSCDGEVKIWNLSQRECI---------------------RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred chhhhhhccccCceEEEEehhhhhhh---------------------heeecccCceeeEEecc--cceEEecCCcceee
Confidence 33366999999999999999966655 78999999999999986 67899999999999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEE
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
|.++. ....+++ ....+..+.-+. .+..++|++. .|.|||.....++.. +.--.+.|.++.|+|-...+|+
T Consensus 134 wk~~~-~p~~til--g~s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~s--mswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 134 WKIDG-PPLHTIL--GKSVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSS--MSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeccC-Ccceeee--cccccccccccc--ccccccccCc--eeeecccccCCccce--eecCCCceeEEecCCCcchhee
Confidence 99875 4556662 344566777666 6778898886 589999977776665 5555678999999999888999
Q ss_pred EEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCC
Q 011160 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 247 (492)
+|+.|+.|.+||++++.++..+. ....-+.|+|+|. ...|++|++|..++.||++...
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi-----------~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~---------- 262 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI-----------LTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLS---------- 262 (433)
T ss_pred eeccCCceEEEecccCCccceee-----------eeccccceecCcc-ccceeeccccccceehhhhhhc----------
Confidence 99999999999999999887765 3335688999994 8899999999999999999865
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (492)
.+.....+|-..|..+.|||.|+-+++|+ |.+|+||..+.+.....
T Consensus 263 ----~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi----------------------------- 309 (433)
T KOG0268|consen 263 ----RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI----------------------------- 309 (433)
T ss_pred ----ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh-----------------------------
Confidence 24556677889999999999999999999 66899999987543222
Q ss_pred CccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE
Q 011160 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 381 (492)
+.... -..|.++.| |.|.+|+++||+|+.|++|.....+.+..+
T Consensus 310 ---------YhtkR-Mq~V~~Vk~-S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 310 ---------YHTKR-MQHVFCVKY-SMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred ---------hhHhh-hheeeEEEE-eccccEEEecCCCcceeeeecchhhhcCCC
Confidence 11111 113899999 999999999999999999998665554433
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-31 Score=213.47 Aligned_cols=279 Identities=14% Similarity=0.214 Sum_probs=222.2
Q ss_pred CccceEEEEEEcC-CCCEEEEecCCCeEEEEECCC-CceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc
Q 011160 59 KHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (492)
Q Consensus 59 ~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 136 (492)
.-...|.+|+||| ...+++.+|.||+||+|+++. |.........|.++|.+++|+. +|..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeeccCCceEEEEcc
Confidence 3467899999999 556777999999999999986 4555555567999999999999 99999999999999999999
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCC-cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
+++... +..|..+|.++.|-+... .+|++|+.|.+|+.||++...++..+..+. .++++..-.
T Consensus 103 S~Q~~~---v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-----------RvYa~Dv~~-- 166 (347)
T KOG0647|consen 103 SGQVSQ---VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-----------RVYAADVLY-- 166 (347)
T ss_pred CCCeee---eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-----------eeeehhccC--
Confidence 985433 788999999999987552 378999999999999999998888777432 467766543
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~ 294 (492)
.+++++..++.|.+|+++++..... .....-...++|++..++....+.|+ +|.+.+..++.+..
T Consensus 167 -pm~vVata~r~i~vynL~n~~te~k-------------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 167 -PMAVVATAERHIAVYNLENPPTEFK-------------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred -ceeEEEecCCcEEEEEcCCCcchhh-------------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 3788889999999999987643211 12222356789999999887777787 88888888876422
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccc-------ceeeeeEEeecCCCcEEEEeeccCeE
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVNFFGPKCEYVVSGSDCGRI 367 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~s~~g~~l~sg~~dg~i 367 (492)
. .-.+|+.|.. -..|++|+| +|.-..|++++.||++
T Consensus 233 ~------------------------------------~nFtFkCHR~~~~~~~~VYaVNsi~F-hP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 233 K------------------------------------DNFTFKCHRSTNSVNDDVYAVNSIAF-HPVHGTLVTAGSDGTF 275 (347)
T ss_pred c------------------------------------CceeEEEeccCCCCCCceEEecceEe-ecccceEEEecCCceE
Confidence 1 2234444442 224889998 9999999999999999
Q ss_pred EEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEe-eCC
Q 011160 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS-GIE 406 (492)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~d 406 (492)
.+||-.....+...+.|..+|++.+|+.+|.++|-+ |.|
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 999998888888888999999999999999987754 444
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3.4e-31 Score=222.71 Aligned_cols=276 Identities=20% Similarity=0.268 Sum_probs=228.7
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+....++||+.|..+.++|..+++++ ..|+||...|+.+.|+|+...+++++.|..|+|
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s~q~l---------------------~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~v 287 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPSNQIL---------------------ATLKGHTKKITSVKFHKDLDTVITASADEIIRV 287 (506)
T ss_pred CCCCcceecCCCCceEEEecchhhhh---------------------hhccCcceEEEEEEeccchhheeecCCcceEEe
Confidence 44578999999999999999999888 789999999999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEE
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
|........... ..|..+|+.+..+| .|.||++++.||...+.|++++.......-....-.+++.+|+||| .+|.
T Consensus 288 ws~~~~s~~~~~-~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifg 363 (506)
T KOG0289|consen 288 WSVPLSSEPTSS-RPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFG 363 (506)
T ss_pred eccccccCcccc-ccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEe
Confidence 998877654444 78999999999999 9999999999999999999998876653332233468999999999 7999
Q ss_pred EEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCC
Q 011160 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 247 (492)
+|..||.|++||+..+.....|.. |.++|..++|+.+ |.+|++++.|+.|++||+|..+...++
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpg----------ht~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~----- 427 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPG----------HTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTI----- 427 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCC----------CCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhccccee-----
Confidence 999999999999999987777654 6779999999986 899999999999999999987643332
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (492)
.......+.++.|.+.|++|+.++.+ .|++++-.+..
T Consensus 428 ---------~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~--------------------------------- 465 (506)
T KOG0289|consen 428 ---------QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS--------------------------------- 465 (506)
T ss_pred ---------eccccccceeEEEcCCCCeEEeecceeEEEEEeccccc---------------------------------
Confidence 22233479999999999999998644 56666644321
Q ss_pred CccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
...+..+..|.+. .+++.| ....+++++++.|..++++.+
T Consensus 466 ---W~~~~~~~~~sg~--st~v~F-g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 ---WTEIKELADHSGL--STGVRF-GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ---ceeeehhhhcccc--cceeee-cccceEEeeccchhheEEeec
Confidence 2344555566644 677887 888999999999999888764
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=209.92 Aligned_cols=246 Identities=18% Similarity=0.281 Sum_probs=204.1
Q ss_pred ccceEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC
Q 011160 60 HRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (492)
Q Consensus 60 h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 138 (492)
-...+..++|++. .+.+++++.||+++|||+.........++.|...|.++.|++. ....+++++.|++|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCC
Confidence 3578999999985 4678899999999999976544433444899999999999983 5677888899999999999888
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
+.+.+ +.+|...|....|+|..+++|++++.|+++++||++.......+.. |...+.++.|+.-+.++
T Consensus 138 ~Sv~T--f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a----------h~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 138 NSVQT--FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA----------HNSEILCCDWSKYNHNV 205 (311)
T ss_pred cceEe--ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe----------ccceeEeecccccCCcE
Confidence 77776 9999999999999999999999999999999999987655544544 55689999999988899
Q ss_pred EEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeecCC-cEEEEecCCCCCCC
Q 011160 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDMGLGPN 296 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~-~i~~~d~~~~~~~~ 296 (492)
+++|+.|+.|+.||+++.+. +...+.+|.-.|+.++|||.. .+|++++-+ ++++||...+
T Consensus 206 l~Tg~vd~~vr~wDir~~r~--------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~---- 267 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRT--------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ---- 267 (311)
T ss_pred EEecCCCceEEEEehhhccc--------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc----
Confidence 99999999999999998762 445567899999999999964 688899844 8999998754
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC-CCcEEEEeeccCeEEEEec
Q 011160 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~g~~l~sg~~dg~i~iwd~ 372 (492)
...+.++.-|..- +..+.| ++ ++.++|+.+.|+.++||+.
T Consensus 268 ---------------------------------ds~~e~~~~HtEF--v~g~Dw-s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 ---------------------------------DSAIETVDHHTEF--VCGLDW-SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ---------------------------------hhhhhhhhccceE--Eecccc-ccccCceeeecccccceeeecc
Confidence 3345556666654 788888 54 5679999999999999984
No 78
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.5e-30 Score=240.39 Aligned_cols=273 Identities=16% Similarity=0.164 Sum_probs=196.8
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeee-eeeEeecCccceEEEEEEcC-CCCEEEEecCC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKLDKHRGCVNTVSFNT-DGDILISGSDD 82 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d 82 (492)
.+++++..+++++.+..+..|+...|..+.. .. . .-++ .....+.+|.+.|++++|+| ++++|++|+.|
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~----~~---~--~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLK----HT---D--YGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEee----cc---c--cccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 4567777788888888888998764432200 00 0 0000 11134779999999999999 88999999999
Q ss_pred CeEEEEECCCCc-------eeeeeccCcCcceEEEEecCCCCC-ceEEeecCCCcEEEEecccCCeeeeEEeecCCCceE
Q 011160 83 RRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (492)
Q Consensus 83 ~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~ 154 (492)
++|++||+.++. .+..+ .+|...|.+++|+| ++ .+|++++.|+.|+|||+.++..... +.+|...|.
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P--~~~~iLaSgs~DgtVrIWDl~tg~~~~~--l~~h~~~V~ 172 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHP--SAMNVLASAGADMVVNVWDVERGKAVEV--IKCHSDQIT 172 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCc--CCCCEEEEEeCCCEEEEEECCCCeEEEE--EcCCCCceE
Confidence 999999997653 23444 78999999999999 64 6899999999999999988766544 778999999
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec----CCCeEEE
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----SDEYTRL 230 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~v~i 230 (492)
+++|+|++ .+|++++.|+.|++||+++++.+..+..+. ......+.|.+++ ..+++++ .|+.|++
T Consensus 173 sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 173 SLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------SAKSQRCLWAKRK-DLIITLGCSKSQQRQIML 241 (493)
T ss_pred EEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCC---------CCcceEEEEcCCC-CeEEEEecCCCCCCeEEE
Confidence 99999999 589999999999999999988766654321 1123456788874 4554432 4788999
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
||+++... .+..
T Consensus 242 WDlr~~~~------------------------p~~~-------------------------------------------- 253 (493)
T PTZ00421 242 WDTRKMAS------------------------PYST-------------------------------------------- 253 (493)
T ss_pred EeCCCCCC------------------------ceeE--------------------------------------------
Confidence 99875320 0000
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee-ccCeEEEEecCCCeeeEEEec-CCcee
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEA-DRHVV 388 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~-h~~~v 388 (492)
...+... .+....| ++++++|++|+ .|+.|++||+.+++++..+.. +..++
T Consensus 254 -------------------------~~~d~~~-~~~~~~~-d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 254 -------------------------VDLDQSS-ALFIPFF-DEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred -------------------------eccCCCC-ceEEEEE-cCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 0000000 0233344 99999999887 599999999999988776644 34567
Q ss_pred EEEeecCCC
Q 011160 389 NCIEPHPHS 397 (492)
Q Consensus 389 ~~~~~s~~~ 397 (492)
..++|.|..
T Consensus 307 ~g~~~~pk~ 315 (493)
T PTZ00421 307 KGLCMMPKW 315 (493)
T ss_pred cceEecccc
Confidence 888888854
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.2e-31 Score=248.96 Aligned_cols=297 Identities=15% Similarity=0.206 Sum_probs=235.6
Q ss_pred ccceEEEEEEcCCCCEEEEec--CCCeEEEEECCCC------------ceeeeeccCcCcceEEEEecCCCCCceEEeec
Q 011160 60 HRGCVNTVSFNTDGDILISGS--DDRRVILWDWKTE------------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 125 (492)
+...|.++..+|+|..+|||+ .|+.++||+.+.- +.+.+ ...|.+.|+|+.|+| ||++||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~-m~~h~~sv~CVR~S~--dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCT-MDDHDGSVNCVRFSP--DGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhee-eccccCceeEEEECC--CCCeEeecc
Confidence 456799999999999999999 8999999987521 12222 367999999999999 999999999
Q ss_pred CCCcEEEEeccc----------CC------eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcccee
Q 011160 126 ADGQVRHAQILE----------RG------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELF 189 (492)
Q Consensus 126 ~dg~v~iw~~~~----------~~------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 189 (492)
.|+.|.||.... +. ......+.+|...|..++|+|++ .+|++++.|++|.+|+..+.+.+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee
Confidence 999999999872 00 11334578999999999999998 69999999999999999999888887
Q ss_pred ecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEE
Q 011160 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (492)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (492)
.. |.+.|..+.|.|- |++|++-+.|++|++|++..-.....+.- |. -.......+..+.|
T Consensus 168 ~~----------H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~--pf-------~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 168 RG----------HQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITK--PF-------EESPLTTFFLRLSW 227 (942)
T ss_pred ec----------ccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeecc--ch-------hhCCCcceeeeccc
Confidence 75 6668999999998 79999999999999999766433322110 10 01122456889999
Q ss_pred cCCCCeeEeec--CC---cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccccee
Q 011160 270 SDQSELLVSYN--DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (492)
Q Consensus 270 s~~~~~l~~~~--~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (492)
||||++|++.. ++ .+.|.+-.+ ...-..+-||..+
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~t--------------------------------------Wk~~~~LvGH~~p-- 267 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGT--------------------------------------WKVDKDLVGHSAP-- 267 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCC--------------------------------------ceeeeeeecCCCc--
Confidence 99999999865 33 478877654 3455778899987
Q ss_pred eeeEEeecCC------C-----------cEEEEeeccCeEEEEecCCCeeeEEEec-CCceeEEEeecCCCCeEEEeeCC
Q 011160 345 VKGVNFFGPK------C-----------EYVVSGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIE 406 (492)
Q Consensus 345 v~~~~~~s~~------g-----------~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d 406 (492)
+.++.| +|. . ..+|+|+.|++|-||.....+++..+.. ....|..|+|+|||..|..+|.|
T Consensus 268 ~evvrF-nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D 346 (942)
T KOG0973|consen 268 VEVVRF-NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD 346 (942)
T ss_pred eEEEEe-ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC
Confidence 777887 552 1 1678999999999999988777755432 34579999999999999999999
Q ss_pred CCEEEeccCCCCCCc
Q 011160 407 SDIKILTPNAADRAT 421 (492)
Q Consensus 407 g~i~iw~~~~~~~~~ 421 (492)
|+|.+..++..+.-.
T Consensus 347 GtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 347 GTVALIHFEEKELGV 361 (942)
T ss_pred CeEEEEEcchHHhCc
Confidence 999999998866543
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.7e-32 Score=217.44 Aligned_cols=305 Identities=16% Similarity=0.172 Sum_probs=231.6
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|++||.++|||+.|-+|+|.|++ ..+........ -..+...+-+++++|..|...|+++.|+|....|++|+.|
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildve-rmlaks~~~em--~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVE-RMLAKSKPKEM--ISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehh-hhhhhcchhhh--ccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 46799999999999999999999998 22221111111 1222233457789999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee-EEeecCCCceEEEEEcC
Q 011160 83 RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~v~~i~~~~ 160 (492)
++|++||.........+. -....+|.++.|+| .|.+|+.|..-.++++||+.+-++... ..-.+|++.|+++.+++
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence 999999998654433331 12345899999999 999999999999999999998776432 23457999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
.+ ++.++++.||.|++||--+++++..+.... ....|.+..|..+ ++++++.+.|..+++|.+.+++.+.
T Consensus 272 t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH--------~gsevcSa~Ftkn-~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 272 TG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAH--------GGSEVCSAVFTKN-GKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred Cc-cEEEEeccCCcEEeeccccHHHHHHHHhhc--------CCceeeeEEEccC-CeEEeecCCcceeeeeeecCCceEE
Confidence 99 588999999999999999999988875321 4457899999997 8999999999999999999987544
Q ss_pred CCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
...-. -..+....-+...|+....+++.-. .+.+.-||.++...
T Consensus 342 ~YtGA----------g~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr------------------------ 387 (430)
T KOG0640|consen 342 EYTGA----------GTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR------------------------ 387 (430)
T ss_pred EEecC----------CcccchhhhhhhhhcCccceEEccccccCceeeccccchhh------------------------
Confidence 32110 0001112223455666666766665 34688999887522
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
....-.+|.+. +..+.- ||.+.-+++|+.|..+++|--
T Consensus 388 -------------~~l~slgHn~a--~R~i~H-SP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 388 -------------VALLSLGHNGA--VRWIVH-SPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred -------------hhhcccCCCCC--ceEEEe-CCCCCceeeecccceeeeeee
Confidence 22233467776 788887 999999999999999999964
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=215.75 Aligned_cols=303 Identities=16% Similarity=0.220 Sum_probs=247.3
Q ss_pred ccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE
Q 011160 43 ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV 122 (492)
Q Consensus 43 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 122 (492)
.-.+....+.+.+.+.||+..|+.++.......+.+++.|.+.+||.++++.++.++ .||.+.|+++.|++ .+.+++
T Consensus 130 sFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~--s~~L~l 206 (481)
T KOG0300|consen 130 SFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHN--SGLLLL 206 (481)
T ss_pred eecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEecc--ccceEE
Confidence 334555677888999999999999999887889999999999999999999999998 89999999999999 999999
Q ss_pred eecCCCcEEEEecc------cCC--------------------------------eeeeEEeecCCCceEEEEEcCCCCc
Q 011160 123 TCAADGQVRHAQIL------ERG--------------------------------GVETKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 123 ~~~~dg~v~iw~~~------~~~--------------------------------~~~~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
+++.|++..||... .+. .++...+.+|...|.+..|...+ .
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence 99999999999731 100 01233467899999999999888 5
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
.+++++.|.+..+||++++..+..+.. |....+.++-+|. ..++++.+.|.+.++||++..-
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtG----------Hd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI------- 347 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTG----------HDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAI------- 347 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccC----------cchhccccccCCc-ceEEEEeccCceeEeccchhhc-------
Confidence 789999999999999999999888875 4557888889997 7899999999999999998421
Q ss_pred CCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
.....+.+|...|+++.|.-+.+ +++++|+ +|++||+++.
T Consensus 348 -------~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM------------------------------- 388 (481)
T KOG0300|consen 348 -------QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM------------------------------- 388 (481)
T ss_pred -------ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc-------------------------------
Confidence 12456778999999999987764 5667755 8999999875
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE-----ecCCceeEEEeecCCCC
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHPHST 398 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~s~~~~ 398 (492)
+.++.++..... ++.++. +..+..||.--++..|++||+. |..+..+ ++|...|++++|..+-.
T Consensus 389 ------RsplATIRtdS~---~NRvav-s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 389 ------RSPLATIRTDSP---ANRVAV-SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred ------cCcceeeecCCc---cceeEe-ecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCc
Confidence 334455544433 677887 7778899999999999999995 4444333 57888999999986654
Q ss_pred --eEEEeeCCCCEEEeccCCC
Q 011160 399 --VLASSGIESDIKILTPNAA 417 (492)
Q Consensus 399 --~l~s~~~dg~i~iw~~~~~ 417 (492)
-|+++|.|..+.-|++...
T Consensus 458 ~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccccccceeeeeEeccc
Confidence 5889999999999998764
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2e-30 Score=235.23 Aligned_cols=320 Identities=19% Similarity=0.325 Sum_probs=259.7
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCC-EEEEecCCCeE
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRV 85 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i 85 (492)
+|-=..+|.|..+|+|.|+|+..++.+ .+++.-.++|++++|..||. ++|+|+..|.+
T Consensus 211 sPaLDVVaiG~~~G~ViifNlK~dkil---------------------~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 211 SPALDVVAIGLENGTVIIFNLKFDKIL---------------------MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred CCcceEEEEeccCceEEEEEcccCcEE---------------------EEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 455567999999999999999998877 66764469999999999985 56777778999
Q ss_pred EEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee--EE------------e-----
Q 011160 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET--KL------------L----- 146 (492)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~------------~----- 146 (492)
.+||++..+........|.+.|....|.| ....+++++.|+.+++|-..++...+. +. +
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~--~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLP--GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecC--CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 99999988887777778989999999998 888899999998888885542211000 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 011160 147 -------------------------------------------------------------------------------- 146 (492)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (492)
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence
Q ss_pred -----------ecCC------CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 147 -----------GKHQ------GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 147 -----------~~~~------~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
-.+. ..+++++.++-| ++.+.|+..|.|-+|++++|-....+... ..|..+|+.+
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~~-------~ah~~~V~gl 499 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGDS-------PAHKGEVTGL 499 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecccccC-------ccccCceeEE
Confidence 0022 457888888888 57788999999999999999777666421 1277799999
Q ss_pred EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEe
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFT 288 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d 288 (492)
+.... ++.+++++.+|.+.+||+.+..+.....+ ...+.++..+....+++.+.++ .|+++|
T Consensus 500 a~D~~-n~~~vsa~~~Gilkfw~f~~k~l~~~l~l----------------~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 500 AVDGT-NRLLVSAGADGILKFWDFKKKVLKKSLRL----------------GSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred EecCC-CceEEEccCcceEEEEecCCcceeeeecc----------------CCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 99887 67899999999999999998765444332 3457778888887788887766 799999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
..+ ++.++.|.||.+. |+.++| ||||++|++++.|++|+
T Consensus 563 ~~t--------------------------------------~kvvR~f~gh~nr--itd~~F-S~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 563 VVT--------------------------------------RKVVREFWGHGNR--ITDMTF-SPDGRWLISASMDSTIR 601 (910)
T ss_pred chh--------------------------------------hhhhHHhhccccc--eeeeEe-CCCCcEEEEeecCCcEE
Confidence 987 6788999999998 999999 99999999999999999
Q ss_pred EEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCC-CCEEEeccCC
Q 011160 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-SDIKILTPNA 416 (492)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~ 416 (492)
+||+.++.++-.+.. ..+++++.|+|+|.+|||+..| .-|++|.-.+
T Consensus 602 ~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 602 TWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999987763 4678999999999999999998 6799996543
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-31 Score=226.98 Aligned_cols=279 Identities=18% Similarity=0.231 Sum_probs=222.6
Q ss_pred CCCCCCCCCCce-EeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEe
Q 011160 1 MDDASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (492)
Q Consensus 1 ~~~~~~~~~~~~-l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 79 (492)
|.++.|+|..++ +|+.++ -.|.||+..+.... +.+...+..|+++.|..||++||.|
T Consensus 29 vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~---------------------k~~srFk~~v~s~~fR~DG~LlaaG 86 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR---------------------KTFSRFKDVVYSVDFRSDGRLLAAG 86 (487)
T ss_pred ceeEecCCCCCCceEEecc-cEEEEEecchhhhh---------------------hhHHhhccceeEEEeecCCeEEEcc
Confidence 456788887776 555553 47999999866655 4455567889999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
+..|.|+|||..+...+..+ .+|+.++..+.|+|. ++..|++|+.|+.+++||+.+... ...+.+|++.|.|.+|+
T Consensus 87 D~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDIS 162 (487)
T ss_pred CCcCcEEEeccccHHHHHHH-hhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccc
Confidence 99999999996665555555 899999999999993 677788999999999999987664 34589999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCC-CccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
|..++++++|+.||.|++||++.. ..+..+. |..+|..+.+-|. +.++++++. ..|++||+-++..
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-----------hg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~q 229 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-----------HGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQ 229 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEec-----------CCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCce
Confidence 998889999999999999999987 4444444 6678999999997 678887764 6899999986642
Q ss_pred cCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCC
Q 011160 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (492)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
. ......|...|+|+.+..++..|++++ |+.+++||+.+-
T Consensus 230 l--------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~------------------------- 270 (487)
T KOG0310|consen 230 L--------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY------------------------- 270 (487)
T ss_pred e--------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-------------------------
Confidence 2 122334889999999999999999999 889999996552
Q ss_pred CCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
+.+..+. -+..|.+++. +|+++.++.|..||.+.+-+...
T Consensus 271 -------------Kvv~s~~---~~~pvLsiav-s~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 271 -------------KVVHSWK---YPGPVLSIAV-SPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred -------------EEEEeee---cccceeeEEe-cCCCceEEEecccceeeeehhhc
Confidence 2222222 2223899998 99999999999999988775433
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-30 Score=208.16 Aligned_cols=280 Identities=19% Similarity=0.311 Sum_probs=217.7
Q ss_pred eEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 011160 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (492)
Q Consensus 12 ~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~ 91 (492)
.+++|+....|.-+++.-.. - .........|.+...+..|.++|++++.+ +.++|+||.|-+|+|||+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-~--------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~ 71 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-K--------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR 71 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-c--------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEecc
Confidence 47778777777666665221 0 11122344566778889999999999996 8999999999999999999
Q ss_pred CCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC
Q 011160 92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (492)
Q Consensus 92 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 171 (492)
+......+ -.|.+.|+++.|.+....+.|++|+.||.|.+|+...-..+ ..+.+|.+.|+.++++|.+ ++.++.+.
T Consensus 72 k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~--~slK~H~~~Vt~lsiHPS~-KLALsVg~ 147 (362)
T KOG0294|consen 72 KRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL--KSLKAHKGQVTDLSIHPSG-KLALSVGG 147 (362)
T ss_pred chhhhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--eeecccccccceeEecCCC-ceEEEEcC
Confidence 88887777 57999999999998322348999999999999998765444 4489999999999999999 68899999
Q ss_pred CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCcccc
Q 011160 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (492)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 251 (492)
|+.+++||+-+++......... ....+.|+|. |.+++.+..+ .|-+|.+.+..+.....
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~-----------~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-------- 206 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKN-----------KATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIE-------- 206 (362)
T ss_pred CceeeeehhhcCccceeeccCC-----------cceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhh--------
Confidence 9999999999998776655432 2345999998 6667666654 68999988765433211
Q ss_pred CCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcccc
Q 011160 252 CPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (492)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (492)
....+.++.|...+.+++.+.++.|.+||.+. ..
T Consensus 207 --------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds--------------------------------------~~ 240 (362)
T KOG0294|consen 207 --------NPKRILCATFLDGSELLVGGDNEWISLKDTDS--------------------------------------DT 240 (362)
T ss_pred --------ccccceeeeecCCceEEEecCCceEEEeccCC--------------------------------------Cc
Confidence 12457888887777666666677899999886 35
Q ss_pred CCceeeccccceeeeeEEe-ecCCCcEEEEeeccCeEEEEecCCC
Q 011160 332 APQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 332 ~~~~~~~~~~~~~v~~~~~-~s~~g~~l~sg~~dg~i~iwd~~~~ 375 (492)
+...+.+|.+. |.++.+ -.|++.||++++.||.|+|||+...
T Consensus 241 ~~~~~~AH~~R--VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 PLTEFLAHENR--VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cceeeecchhh--eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 67788899987 777773 4678899999999999999999655
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-32 Score=244.94 Aligned_cols=255 Identities=15% Similarity=0.193 Sum_probs=202.5
Q ss_pred cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC----------------------------e--e---------
Q 011160 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG----------------------------G--V--------- 141 (492)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~----------------------------~--~--------- 141 (492)
..|.+.|+++.|++ +|++||+|+.||.|+||.+.... . .
T Consensus 264 ~ah~gaIw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccCCcEEEEEeCC--CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 38999999999999 99999999999999999986500 0 0
Q ss_pred -------------------eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCccee
Q 011160 142 -------------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (492)
Q Consensus 142 -------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (492)
+...+.+|.+.|.++.|+.++ +|++++.|.+|++|++....++..|. |
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-----------H 408 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-----------H 408 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-----------c
Confidence 112245799999999999876 78999999999999999999999998 7
Q ss_pred ecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D 281 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 281 (492)
..-|+|++|+|-+.++|++|+-||.|+||++...+...... -..-|++++|.|+|++.+.|+ +
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----------------l~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND----------------LRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh----------------hhhhheeEEeccCCceEEEEEec
Confidence 88899999999889999999999999999998876543322 246799999999999999999 8
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe
Q 011160 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (492)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg 361 (492)
|.+++|+....+........ ....+..+++ .|+++.|+..+-..|++.
T Consensus 473 G~C~fY~t~~lk~~~~~~I~----------------------------~~~~Kk~~~~----rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIR----------------------------LHNKKKKQGK----RITGLQFFPGDPDEVLVT 520 (712)
T ss_pred cEEEEEEccCCeEEEeeeEe----------------------------eccCccccCc----eeeeeEecCCCCCeEEEe
Confidence 89999998764322111000 0011111122 389999843344457777
Q ss_pred eccCeEEEEecCCCeeeEEEecCCc--eeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 362 SDCGRIFIWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+.|..|+|+|..+..++..|+++.+ .-....|+.||++|++++.|..|+||+.....
T Consensus 521 SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 8899999999999999999987654 35667899999999999999999999985543
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-30 Score=231.92 Aligned_cols=275 Identities=19% Similarity=0.269 Sum_probs=225.4
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeE
Q 011160 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (492)
Q Consensus 65 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 144 (492)
+-+.|+ ..+.||+|.. ..|.+|+..++...... ..+...|+++.|++ +|.+|++|..+|.|.|||..+.+.+..
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~~- 254 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTRT- 254 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECC--CCCEEEEeecCCeEEEEehhhcccccc-
Confidence 345677 3456777654 57999999988854444 34488999999999 999999999999999999988777665
Q ss_pred Eeec-CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccce-eecCCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 145 LLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 145 ~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
+.. |...|-+++|.. ..+.+|+.++.|..+|++..+.... +.. |...|..+.|+++ +.++++|
T Consensus 255 -~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~----------H~qeVCgLkws~d-~~~lASG 319 (484)
T KOG0305|consen 255 -LRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQG----------HRQEVCGLKWSPD-GNQLASG 319 (484)
T ss_pred -ccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhc----------ccceeeeeEECCC-CCeeccC
Confidence 666 999999999983 5789999999999999998876655 221 6668999999998 7999999
Q ss_pred cCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC-CCCeeEeec---CCcEEEEecCCCCCCCCC
Q 011160 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN---DEFIYLFTQDMGLGPNPP 298 (492)
Q Consensus 223 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~---~~~i~~~d~~~~~~~~~~ 298 (492)
+.|+.+.|||..... +......|...|..++|+| ...+||+|+ |..|++||..++...
T Consensus 320 gnDN~~~Iwd~~~~~---------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i--- 381 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPE---------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI--- 381 (484)
T ss_pred CCccceEeccCCCcc---------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe---
Confidence 999999999995443 4455667899999999999 456888876 457999999875322
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE--eeccCeEEEEecCCCe
Q 011160 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGE 376 (492)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s--g~~dg~i~iwd~~~~~ 376 (492)
..+.... .|.++.| ++..+-|++ |-.+..|.||+..+.+
T Consensus 382 -----------------------------------~~vdtgs---QVcsL~W-sk~~kEi~sthG~s~n~i~lw~~ps~~ 422 (484)
T KOG0305|consen 382 -----------------------------------DSVDTGS---QVCSLIW-SKKYKELLSTHGYSENQITLWKYPSMK 422 (484)
T ss_pred -----------------------------------cccccCC---ceeeEEE-cCCCCEEEEecCCCCCcEEEEeccccc
Confidence 2222222 3899999 998866655 4567789999999999
Q ss_pred eeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 377 LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 377 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 423 LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999999999999775
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.5e-30 Score=208.47 Aligned_cols=274 Identities=18% Similarity=0.228 Sum_probs=218.2
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
...|.++.|+|.++.|+.++.||.+++|++........+ .|..++.+++|. +...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFA---DESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeecc---CCceEEEeccCceEEEEEecCCcc
Confidence 678999999999999999999999999999988766665 688999999998 467899999999999999988765
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
.. +..|..+|.||.+++.. ..+++|+.|++|++||.+.......+. ....|.++... ++.|+
T Consensus 88 ~~---igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d-----------~~kkVy~~~v~---g~~Lv 149 (323)
T KOG1036|consen 88 DQ---IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFD-----------QGKKVYCMDVS---GNRLV 149 (323)
T ss_pred ee---eccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccc-----------cCceEEEEecc---CCEEE
Confidence 44 67899999999999876 478999999999999999855554443 33368888876 56899
Q ss_pred EecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCC
Q 011160 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (492)
Q Consensus 221 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~ 299 (492)
+|+.+..|.+||+++..... +.....-+..++++++-|++.=.++++ +|.+.+=.++.....
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~-------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~---- 212 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPF-------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA---- 212 (323)
T ss_pred EeecCceEEEEEcccccchh-------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH----
Confidence 99999999999999865321 112223456899999999876555555 887666544432100
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccc-------ceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
......|+.|.. ..+|++++| +|-.+.+|||+.||.|-+||+
T Consensus 213 ------------------------------~skkyaFkCHr~~~~~~~~~yPVNai~F-hp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 213 ------------------------------QSKKYAFKCHRLSEKDTEIIYPVNAIAF-HPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ------------------------------hhhceeEEeeecccCCceEEEEeceeEe-ccccceEEecCCCceEEEccC
Confidence 111223333332 234899999 999999999999999999999
Q ss_pred CCCeeeEEEecCCceeEEEeecCCCCeEEEeeC
Q 011160 373 KGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
.+.+.+..+......|.+++|+.+|..||.++.
T Consensus 262 ~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 262 FNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999888788999999999999999864
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=228.42 Aligned_cols=278 Identities=16% Similarity=0.259 Sum_probs=225.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
++-|-++...|+||+.|..|++|+...++.- ...+|.|..+.|+.+.|.+++.++++++.|
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tLaGs~g~it~~d~d~~~~~~iAas~d 240 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-------------------LISTLAGSLGNITSIDFDSDNKHVIAASND 240 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccchhh-------------------hhhhhhccCCCcceeeecCCCceEEeecCC
Confidence 4556677789999999999999999865522 337788889999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
+.+++|++...+...++ .+|+..|+++.|.. ....+++|+.|.+|++||+....+.... + ....+..|+.++
T Consensus 241 ~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~--~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l--~~S~cnDI~~~~-- 312 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKL--SHSRVVSGSADRTIKLWDLQKAYCSKTV-L--PGSQCNDIVCSI-- 312 (459)
T ss_pred Cceeeeeccchhhhhhh-cccccceeeehhhc--cccceeeccccchhhhhhhhhhheeccc-c--ccccccceEecc--
Confidence 99999999999988887 89999999999987 5556999999999999999887665542 2 234566676663
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
..+++|-.|+.|++||+++......... .+.|+++..+++ +..+++.+.|.++.+.|+++.+....+
T Consensus 313 -~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-----------gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 313 -SDVISGHFDKKVRFWDIRSADKTRSVPL-----------GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred -eeeeecccccceEEEeccCCceeeEeec-----------CcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEEe
Confidence 4689999999999999999998877763 347999999998 678888899999999999998754332
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
. ...+... ...+.+.|||++.|+++|+ ++.|+||++.+++
T Consensus 380 s---------A~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK---------------------------- 420 (459)
T KOG0288|consen 380 S---------AEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK---------------------------- 420 (459)
T ss_pred e---------ccccccc--cccceeEECCCCceeeeccCCCcEEEEEccCce----------------------------
Confidence 1 1112222 3488999999999999999 7799999999853
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
....+........|+++.| +|.|.+|++++.++.+.+|
T Consensus 421 ----------lE~~l~~s~s~~aI~s~~W-~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 421 ----------LEKVLSLSTSNAAITSLSW-NPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ----------EEEEeccCCCCcceEEEEE-cCCCchhhcccCCcceEec
Confidence 3334443333334999999 9999999999999999999
No 89
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.4e-30 Score=225.55 Aligned_cols=254 Identities=31% Similarity=0.577 Sum_probs=191.2
Q ss_pred ccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE
Q 011160 43 ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV 122 (492)
Q Consensus 43 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 122 (492)
+....+.++.+.+.|.||++.|+|+.|+.+|.+|++|+.|-.+.|||...-+.+..+..+|...|.++.|.|.++...++
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence 44556677888999999999999999999999999999999999999998889999989999999999999988889999
Q ss_pred eecCCCcEEEEecccCC--------eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccce-eecCC
Q 011160 123 TCAADGQVRHAQILERG--------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRP 193 (492)
Q Consensus 123 ~~~~dg~v~iw~~~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~ 193 (492)
+|..|..|+++|+...+ ......+..|...|..|+-.|++|+.|.+++.||+|+-+|++....-.. ..++.
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 99999999999997521 2333457789999999999999999999999999999999987432211 00000
Q ss_pred CCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc----CCCCCCCC-----ccccCCCCcCCC-----
Q 011160 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD----GSTDFGQP-----ADYFCPPNLIGD----- 259 (492)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~----- 259 (492)
.. ..-+..-....++..+|....+|++|+.|-..++||.+..... .......| +..+++.++...
T Consensus 192 ~l-~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 192 IL-VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HH-HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 00 0000022357899999998999999999999999996543211 11122223 344455444111
Q ss_pred -cccceEEEEEcCCCC-eeEeecCCcEEEEecCCCCCCCC
Q 011160 260 -EQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMGLGPNP 297 (492)
Q Consensus 260 -~~~~i~~~~~s~~~~-~l~~~~~~~i~~~d~~~~~~~~~ 297 (492)
....++-++|+|+|. +|++-+.+.|+++++..++...+
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 112356789999986 55666677899999987655433
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.2e-30 Score=221.23 Aligned_cols=305 Identities=19% Similarity=0.175 Sum_probs=228.2
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.++.+|+.++.++++.+|+|.=|++.+|+........-..... .-..++..+ ++|...|.+++.++||+|||+|+.|
T Consensus 147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~-~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS-HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh-ccCCCCccc--ccccceeEEEEEcCCCcEEEecCCC
Confidence 3567899999999999999999999999854211111000000 001111111 4899999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
..|.||+.++.+.+..+ .+|.+.|.+++|-. ....|++++.|+.|++|++.....+.+ +.+|.+.|.+|....-+
T Consensus 224 ~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vet--lyGHqd~v~~IdaL~re 298 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVET--LYGHQDGVLGIDALSRE 298 (479)
T ss_pred ceEEEecCcccchhhcc-cccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHH--HhCCccceeeechhccc
Confidence 99999999999998887 89999999999998 788899999999999999988777766 89999999999888877
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
+++-+|+.|+++++|++..... ..+.. +.+.+-|++|-.+ ..|++|+.+|.|.+|++.+.+.+...
T Consensus 299 -R~vtVGgrDrT~rlwKi~eesq-lifrg----------~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 299 -RCVTVGGRDRTVRLWKIPEESQ-LIFRG----------GEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred -ceEEeccccceeEEEeccccce-eeeeC----------CCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEe
Confidence 5666777999999999943332 22222 4557889999865 68999999999999999988766554
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
....+..... -...++.+|++++..|...++++|+ +|.|++|-+..+.
T Consensus 365 ~~AHgv~~~~---~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~---------------------------- 413 (479)
T KOG0299|consen 365 RLAHGVIPEL---DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL---------------------------- 413 (479)
T ss_pred eccccccCCc---cccccccceeeeEecccCceEEecCCCCceEEEEecCCc----------------------------
Confidence 4333221110 1112336899999999999999999 7799999998762
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe-eccCeEEEE
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIW 370 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg-~~dg~i~iw 370 (492)
..+..+..-.-...|++++| +++|++|++| +....+--|
T Consensus 414 ---------r~i~~l~~ls~~GfVNsl~f-~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 414 ---------RAINLLYSLSLVGFVNSLAF-SNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ---------cccceeeecccccEEEEEEE-ccCCCEEEEeccccccccee
Confidence 22333333333345999998 9999966665 334444334
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=3.1e-31 Score=215.02 Aligned_cols=253 Identities=14% Similarity=0.199 Sum_probs=206.2
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-------ccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
+.+..+-|..|+|||++|++|+.||.|.+|+..+|+....+ +.-+..+|.|+.|+. |..+|++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEE
Confidence 44567889999999999999999999999999998764433 134778999999999 999999999999999
Q ss_pred EEecccCCeeeeEEee-cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 132 HAQILERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
+|.+.++.++.. +. .|+..|+|+.|+.|+. .+++++.|.++++.-+.+|+++..++. |.+.|+...
T Consensus 289 vWri~tG~ClRr--FdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrG----------HsSyvn~a~ 355 (508)
T KOG0275|consen 289 VWRIETGQCLRR--FDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRG----------HSSYVNEAT 355 (508)
T ss_pred EEEEecchHHHH--hhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcC----------ccccccceE
Confidence 999999998876 44 8999999999999995 679999999999999999999998875 666899999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
|.++ |+.+++++.||+|++|+..+.+...++..
T Consensus 356 ft~d-G~~iisaSsDgtvkvW~~KtteC~~Tfk~---------------------------------------------- 388 (508)
T KOG0275|consen 356 FTDD-GHHIISASSDGTVKVWHGKTTECLSTFKP---------------------------------------------- 388 (508)
T ss_pred EcCC-CCeEEEecCCccEEEecCcchhhhhhccC----------------------------------------------
Confidence 9998 78999999999999999988663322110
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
......|+++..+..+-..++.+...++|+|.
T Consensus 389 ------------------------------------------------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 389 ------------------------------------------------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred ------------------------------------------------CCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 00111144444434445577777788899999
Q ss_pred ecCCCeeeEEEecC---CceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcc
Q 011160 371 KKKGGELIRVIEAD---RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (492)
Q Consensus 371 d~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 422 (492)
++ .|+.++.+... .+...+.+.||.|.++.+.+.|+.++.+.+.+|++...
T Consensus 421 n~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 421 NM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred ec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 98 77888877532 24466778999999999999999999999999887654
No 92
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.4e-30 Score=232.46 Aligned_cols=336 Identities=13% Similarity=0.153 Sum_probs=252.9
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC-----------C
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-----------G 73 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----------~ 73 (492)
.|.++...|..-..|..++|||+..-..+. ....+--|...|+.+.--|. .
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~kvg------------------k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNKVG------------------KCSSMLYHSACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEecccccccc------------------ceeeeeeccceeeeeccccccccCcccccCCc
Confidence 367788889999999999999998544332 22344558888888876551 1
Q ss_pred CEEEEecCCCeEEEEECCCCceeee----e--------------------------------ccCcCcceEEEEecCCCC
Q 011160 74 DILISGSDDRRVILWDWKTERVKLS----F--------------------------------HSGHNDNVFQAKIMPFTD 117 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~----~--------------------------------~~~~~~~v~~~~~~~~~~ 117 (492)
..++|++.|++|++|++..+..-.. + .-+....+.+++.+| +
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp--~ 470 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP--D 470 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC--C
Confidence 3588999999999999975211000 0 001234689999999 9
Q ss_pred CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC--CCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCC
Q 011160 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPI 194 (492)
Q Consensus 118 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~ 194 (492)
++.|++|..-|+++||++...+.... +..|...|.|+.|+.- +.++|++++.|.-|++||....-. ++.+..
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~--~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~--- 545 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCF--MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG--- 545 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhh--eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc---
Confidence 99999999999999999988776655 7899999999999752 336899999999999999875533 333332
Q ss_pred CCCCcceeecceEEEEEcCCCC-ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC
Q 011160 195 DDRRNYMTVVNLNAIAIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (492)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (492)
|...|+++.|--.+. ..+++++.|..|.+ +.....-... ..+..........++.++..|..
T Consensus 546 -------HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~---------~f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 546 -------HSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGR---------LFPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred -------cccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCce---------eccccccccccceEEEeeeCCCc
Confidence 667899999987632 56788888877654 3322110000 01111222235678999999999
Q ss_pred CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccc-eeeeeEEee
Q 011160 274 ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFF 351 (492)
Q Consensus 274 ~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 351 (492)
+++++++ |.+|+||++..+ +..+.|++.... .....+..
T Consensus 609 k~v~t~cQDrnirif~i~sg--------------------------------------Kq~k~FKgs~~~eG~lIKv~l- 649 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIESG--------------------------------------KQVKSFKGSRDHEGDLIKVIL- 649 (1080)
T ss_pred ceEEEEecccceEEEecccc--------------------------------------ceeeeecccccCCCceEEEEE-
Confidence 9999988 558999999985 445556553332 23667777
Q ss_pred cCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCc
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
+|.|.|||+.+.|.++.++|..+|+++.+..+|...|+.|.|.+|.+.|++++.||+|.||.+.......
T Consensus 650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~ 719 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIR 719 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997654433
No 93
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=3.1e-29 Score=223.03 Aligned_cols=355 Identities=15% Similarity=0.201 Sum_probs=256.2
Q ss_pred ceEeeccCcceEEEEeeccCcchhh----hhhhcccc------cccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTR----NFALRRRA------SEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
-+||+++.|..||||.+..+....+ ........ ......++.....+.||...|+++.|+|.+..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 4699999999999999876553321 00001100 0111112222245569999999999999999999999
Q ss_pred CCCeEEEEECCCCce--eeee----ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc-CCeeeeEEeecCCCce
Q 011160 81 DDRRVILWDWKTERV--KLSF----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLGKHQGRA 153 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~--~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~v 153 (492)
.|+++.+|.-.+..- +... ..+....-+...|+| +++.+++-+..|..++|.... ........+.+|.+.|
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 999999998765421 1111 123445688999999 999999999999999999322 2334445578999999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc-ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
++++|.|.|. +|++.+.|.+-+++-.-..+.. ..+..++. |...++|++|-+. ...|++|.....+|+|+
T Consensus 365 ~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQi-------HGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 365 KDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQI-------HGYDLTCLSFVNE-DLQFVSGADEKVLRVFE 435 (764)
T ss_pred eeeeecCCCC-EEEEeccccceeeecccccccceeeeccccc-------ccccceeeehccC-Cceeeecccceeeeeec
Confidence 9999999995 8899999999999875522221 11211221 5567899999985 57899999999999998
Q ss_pred cccccc-----------cCC--C-------CCCCCccc-----------------------------------------c
Q 011160 233 IRKYKW-----------DGS--T-------DFGQPADY-----------------------------------------F 251 (492)
Q Consensus 233 ~~~~~~-----------~~~--~-------~~~~~~~~-----------------------------------------~ 251 (492)
....-. ... . .++...+. +
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 653200 000 0 00000000 0
Q ss_pred CCCCcCCCcccceEEEEEcCCCCeeEeecCC------cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCC
Q 011160 252 CPPNLIGDEQVGITGLAFSDQSELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (492)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (492)
...+..-+|...|.+++.+|+++++|++... .|++|+..+
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~---------------------------------- 561 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN---------------------------------- 561 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc----------------------------------
Confidence 0011233578899999999999999998732 399999876
Q ss_pred CCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCee----eEEEecCCceeEEEeecCCCCeEE
Q 011160 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL----IRVIEADRHVVNCIEPHPHSTVLA 401 (492)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~ 401 (492)
......+.+|.-. |+.+.| ||||+||++.+.|.++.+|....... ...++.|...|.++.|+|++.++|
T Consensus 562 ----W~~~~~L~~HsLT--VT~l~F-Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~Fa 634 (764)
T KOG1063|consen 562 ----WLQVQELEGHSLT--VTRLAF-SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFA 634 (764)
T ss_pred ----hhhhheecccceE--EEEEEE-CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeE
Confidence 3455678888875 999999 99999999999999999999754322 234688999999999999999999
Q ss_pred EeeCCCCEEEeccCCC
Q 011160 402 SSGIESDIKILTPNAA 417 (492)
Q Consensus 402 s~~~dg~i~iw~~~~~ 417 (492)
|+|.|++|+||.....
T Consensus 635 TaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 635 TASRDKKVKVWEEPDL 650 (764)
T ss_pred EecCCceEEEEeccCc
Confidence 9999999999999876
No 94
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=5.3e-30 Score=228.72 Aligned_cols=250 Identities=15% Similarity=0.208 Sum_probs=173.1
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecC------------------------C---CCCCCcceeecceEEEEEcCCCCc
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCR------------------------P---IDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~---~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
.|++++.|++|++|++.....-..+... . ............+.+++.+|+ ++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gq 472 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQ 472 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cc
Confidence 4899999999999999863322111100 0 000111123457999999998 79
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC---CCeeEeecCC-cEEEEecCCCC
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYNDE-FIYLFTQDMGL 293 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~-~i~~~d~~~~~ 293 (492)
+|++|..-|++++|++...+. ......|+..|.|+.|+.. .++||+++.+ -|++||+....
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred eecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 999999999999999987653 2346678999999999963 5789999966 59999997654
Q ss_pred CC-CCCCCCCCCccccccccCCCCCCCCCCCCCCCcccc------CCceeeccc---cceeeeeEEeecCCCcEEEEeec
Q 011160 294 GP-NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI------APQVYKGHR---NCVTVKGVNFFGPKCEYVVSGSD 363 (492)
Q Consensus 294 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~v~~~~~~s~~g~~l~sg~~ 363 (492)
.+ ..+..+..........-........+...+...... ....+..|. ...++..++. .|..+++++++.
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V-dp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV-DPTSKLVVTVCQ 616 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee-CCCcceEEEEec
Confidence 33 334444433333333222222222222222211111 111222222 2235788888 999999999999
Q ss_pred cCeEEEEecCCCeeeEEEec---CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC-cccCccccccc
Q 011160 364 CGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQFKP 431 (492)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~ 431 (492)
|..|+||++.+|+..+.|++ |.+....+...|.|-|||+.+.|+++.++|..++++. ++.+|.+.+..
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG 688 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee
Confidence 99999999999999999975 6677889999999999999999999999999999875 45666655443
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.2e-29 Score=204.91 Aligned_cols=241 Identities=14% Similarity=0.175 Sum_probs=198.7
Q ss_pred cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC-cEEEEEcCCCcEEEEe
Q 011160 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFD 179 (492)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~l~~~~~dg~i~iwd 179 (492)
..|.++|++++. ++.++|+|+.|-+|+|||++....... +..|.+.|+++.|.+... ..|++|+.||.|.+|+
T Consensus 40 ~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~--ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 40 SAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGI--LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcc--eeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 679999999999 689999999999999999988776665 778999999999988652 2589999999999999
Q ss_pred CCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCC
Q 011160 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (492)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (492)
...-..+..++. |...|+.++.+|. +++.++.+.|+.+++|++-+++......+
T Consensus 114 ~~~W~~~~slK~----------H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--------------- 167 (362)
T KOG0294|consen 114 VGSWELLKSLKA----------HKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVAFVLNL--------------- 167 (362)
T ss_pred cCCeEEeeeecc----------cccccceeEecCC-CceEEEEcCCceeeeehhhcCccceeecc---------------
Confidence 998888777765 5557999999998 78999999999999999998874332211
Q ss_pred cccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc
Q 011160 260 EQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (492)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (492)
...-+.+.|+|.|.+++....+.|-+|.+.+.... ..+...
T Consensus 168 -~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~--------------------------------------~~i~~~ 208 (362)
T KOG0294|consen 168 -KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVF--------------------------------------REIENP 208 (362)
T ss_pred -CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHh--------------------------------------hhhhcc
Confidence 12234499999999999999999999998864221 111111
Q ss_pred ccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEee--cCCCCeEEEeeCCCCEEEeccCCC
Q 011160 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP--HPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 340 ~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
..+.++.| -++..|++|++|+.|.+||..+..+...+.+|.+.|-.+.+ .|++.+|+|+|.||.|+|||++..
T Consensus 209 ---~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 209 ---KRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ---ccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 12566666 46789999999999999999999999999999999999884 577889999999999999999775
No 96
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.2e-29 Score=231.57 Aligned_cols=250 Identities=12% Similarity=0.112 Sum_probs=185.3
Q ss_pred ecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCC-CceEEeecCCCcEEEEecccCCee------eeEEeecCCC
Q 011160 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGV------ETKLLGKHQG 151 (492)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~------~~~~~~~~~~ 151 (492)
|+.++.|++|+......+..+ .+|...|.+++|+| + +.+|++|+.||.|+||++.++... ....+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 677899999998776666666 79999999999999 5 789999999999999999764321 1224678999
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
.|.+++|+|++..+|++++.|++|++||+++++....+. +...|.+++|+|+ +.+|++++.|+.|++|
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------~~~~V~Slswspd-G~lLat~s~D~~IrIw 194 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------MPKKLSSLKWNIK-GNLLSGTCVGKHMHII 194 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------cCCcEEEEEECCC-CCEEEEEecCCEEEEE
Confidence 999999999986677899999999999999987665443 2346899999998 7899999999999999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccce-----EEEEEcCCCCeeEeec-CC----cEEEEecCCCCCCCCCCCC
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-----TGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSS 301 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~~~~l~~~~-~~----~i~~~d~~~~~~~~~~~~~ 301 (492)
|+++++.... ...|.+.+ ....|++++.+|++++ ++ .|++||++..
T Consensus 195 D~Rsg~~i~t---------------l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------- 250 (568)
T PTZ00420 195 DPRKQEIASS---------------FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------- 250 (568)
T ss_pred ECCCCcEEEE---------------EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC---------
Confidence 9998764321 22344332 3344668888888766 43 5999999853
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE
Q 011160 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 381 (492)
..++..+..+.....+..... .++|.++++|+.|++|++|++..+.. ..+
T Consensus 251 ----------------------------~~pl~~~~ld~~~~~L~p~~D-~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l 300 (568)
T PTZ00420 251 ----------------------------TSALVTMSIDNASAPLIPHYD-ESTGLIYLIGKGDGNCRYYQHSLGSI-RKV 300 (568)
T ss_pred ----------------------------CCceEEEEecCCccceEEeee-CCCCCEEEEEECCCeEEEEEccCCcE-Eee
Confidence 122333332222211233322 56699999999999999999977643 223
Q ss_pred ec--CCceeEEEeecCCC
Q 011160 382 EA--DRHVVNCIEPHPHS 397 (492)
Q Consensus 382 ~~--h~~~v~~~~~s~~~ 397 (492)
.. +..++.+++|.|..
T Consensus 301 ~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccccCCCccceEEcccc
Confidence 22 45678899999975
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=214.31 Aligned_cols=299 Identities=18% Similarity=0.222 Sum_probs=229.2
Q ss_pred eEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceee----e------------ec-cCcCcceEEEEecCCC
Q 011160 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL----S------------FH-SGHNDNVFQAKIMPFT 116 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~----~------------~~-~~~~~~v~~~~~~~~~ 116 (492)
...+..|.-+|.+++++|+..++++++.+++|.=|++.++.... + .. .+|...+.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-- 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-- 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence 35677899999999999999999999999999999998876331 0 11 26888999999999
Q ss_pred CCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCC
Q 011160 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (492)
|+++|++|+.|..|.||+..+.+.+.. +.+|.+.|.+++|-... +.+++++.|++|++|+++....+..+..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyG----- 284 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYG----- 284 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhC-----
Confidence 999999999999999999999888766 89999999999998655 6789999999999999998888777654
Q ss_pred CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCee
Q 011160 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (492)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 276 (492)
|...|..+..... ...+-+|+.|+++++|++.... +.+..++.+.+-|++|-.+..++
T Consensus 285 -----Hqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~ees----------------qlifrg~~~sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 285 -----HQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEES----------------QLIFRGGEGSIDCVAFINDEHFV 342 (479)
T ss_pred -----Cccceeeechhcc-cceEEeccccceeEEEeccccc----------------eeeeeCCCCCeeeEEEeccccee
Confidence 5667888877765 5667777799999999995432 23445567789999998776555
Q ss_pred EeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc
Q 011160 277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (492)
Q Consensus 277 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~ 356 (492)
..+.+|.|.+|++...+........ ......+..-..+..|++++. .|...
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~A----------------------------Hgv~~~~~~~~~~~Witsla~-i~~sd 393 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLA----------------------------HGVIPELDPVNGNFWITSLAV-IPGSD 393 (479)
T ss_pred eccCCceEEEeeecccCceeEeecc----------------------------ccccCCccccccccceeeeEe-cccCc
Confidence 4444779999999875443321100 000000011111135899998 89999
Q ss_pred EEEEeeccCeEEEEecCCC----eeeEEEecCCceeEEEeecCCCCeEEE-eeCCCCEEEecc
Q 011160 357 YVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPHSTVLAS-SGIESDIKILTP 414 (492)
Q Consensus 357 ~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~ 414 (492)
++|+|+.+|.|++|-+..+ +++..+. -.+.|++++|+++|+.|++ .+....+--|-.
T Consensus 394 L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 394 LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred eEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 9999999999999999887 4455555 5678999999999995554 455555555543
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=3.8e-30 Score=221.15 Aligned_cols=288 Identities=16% Similarity=0.212 Sum_probs=208.2
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-CccceEEEEEEcCCCCEEEEecCCC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
.+.|.|-++++|+-|-+|++||++ |.-. +++-.+.|. .....|++++|++.|..|++.+...
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~-gMda----------------s~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQ-GMDA----------------SMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred eecCCCceeeeccccceEEEEecc-cccc----------------cchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 356889999999999999999998 3211 111122332 2345799999999999888888888
Q ss_pred eEEEEECCCCceeeee------------ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee----EEee
Q 011160 84 RVILWDWKTERVKLSF------------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET----KLLG 147 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~----~~~~ 147 (492)
..+|+|-.. ..+..+ .+||...++|.+|+|. +...+++++.||+++||++...+.... +...
T Consensus 237 qakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 237 QAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred ceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 999999653 333332 2689999999999994 456789999999999999976543221 1122
Q ss_pred cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCe
Q 011160 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (492)
Q Consensus 148 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (492)
+..-+++.++|+++++ +|++|+.||.|.+|+.........+... ..|.....|+|++|+++ +++|++-+.|++
T Consensus 315 g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk-----~AH~~g~~Itsi~FS~d-g~~LlSRg~D~t 387 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVK-----DAHLPGQDITSISFSYD-GNYLLSRGFDDT 387 (641)
T ss_pred CcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEee-----eccCCCCceeEEEeccc-cchhhhccCCCc
Confidence 3345789999999995 7999999999999998655443333322 22224458999999998 799999999999
Q ss_pred EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-------CcEEEEecCCCCCCCCCCC
Q 011160 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-------EFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 228 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------~~i~~~d~~~~~~~~~~~~ 300 (492)
+++||+++.+..-....+ ......-+.++|||+.++|++|+. +.+++||..+-
T Consensus 388 LKvWDLrq~kkpL~~~tg------------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~-------- 447 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTG------------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL-------- 447 (641)
T ss_pred eeeeeccccccchhhhcC------------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce--------
Confidence 999999987532111000 011334577899999999999862 25899987762
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
..+..+.-... .|..+.| +|.-+.|..|+.||+++||=
T Consensus 448 ------------------------------d~v~ki~i~~a--Svv~~~W-hpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 448 ------------------------------DTVYKIDISTA--SVVRCLW-HPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ------------------------------eeEEEecCCCc--eEEEEee-cchhhheeeecCCCceEEEE
Confidence 22233322222 3777888 99999999999999999874
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.6e-28 Score=184.98 Aligned_cols=301 Identities=17% Similarity=0.214 Sum_probs=227.9
Q ss_pred eeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECC------CCc--------eeeeeccCcCcceEEEEecCC
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK------TER--------VKLSFHSGHNDNVFQAKIMPF 115 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~------~~~--------~~~~~~~~~~~~v~~~~~~~~ 115 (492)
.+..+..|. .+..|.+++|+|.|.+.+.|+..++++|-... .+. .+..-.+.|.+.|+|.+|+|
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~- 99 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP- 99 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-
Confidence 445555555 46789999999999999999999999986432 111 11122256899999999999
Q ss_pred CCCceEEeecCCCcEEEEecccCCee---eeEEeecCCCceEEEEEcCC---CCcEEEEEc-CCCcEEEEeCCCCCccce
Q 011160 116 TDDRSIVTCAADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPG---SPHVFYTCG-EDGLVQHFDLRTGAATEL 188 (492)
Q Consensus 116 ~~~~~l~~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~~i~~~~~---~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 188 (492)
.|.+|++|+.|.+|++..+....+. ....+..|.+.|..++|..+ +..+|++++ .|..|++-|..+++....
T Consensus 100 -~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 100 -CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred -ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999999999877654332 12347789999999999653 334666654 456777888888887766
Q ss_pred eecCCCCCCCcceeecceEEE-EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEE
Q 011160 189 FTCRPIDDRRNYMTVVNLNAI-AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (492)
+.. |.+.|.++ .| ++.++++|+.|.+|++||++-...+....-. .+-..-....|.++
T Consensus 179 ~sg----------htghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------~~~~glessavaav 237 (350)
T KOG0641|consen 179 LSG----------HTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------FHDGGLESSAVAAV 237 (350)
T ss_pred ecC----------CcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCc--------ccCCCcccceeEEE
Confidence 654 34445554 33 3679999999999999999876543321110 00111134689999
Q ss_pred EEcCCCCeeEeecC-CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeee
Q 011160 268 AFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (492)
Q Consensus 268 ~~s~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 346 (492)
+..|.|++|+++.. ....+||++. ...++.|..|... |.
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg--------------------------------------~r~iq~f~phsad--ir 277 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRG--------------------------------------GRMIQRFHPHSAD--IR 277 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeC--------------------------------------CceeeeeCCCccc--ee
Confidence 99999999999994 5799999998 4677888888887 99
Q ss_pred eEEeecCCCcEEEEeeccCeEEEEecCCC----eeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 347 ~~~~~s~~g~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
++.| +|...|+.+++.|..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 278 ~vrf-sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 278 CVRF-SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEe-CCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999 999999999999999999998432 1233445688889999999999999999999999999764
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4e-29 Score=200.76 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=206.0
Q ss_pred CCCCCC-CCceEeeccCcceEEEEeecc-CcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 3 DASNNN-NNKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 3 ~~~~~~-~~~~l~t~~~dg~v~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
++.|+| ...++++|+.||+||+|+++. |+.++ +....|.++|.+++|+.||..+++|+
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------KAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccc--------------------hhhhccCCCeEEEEEccCCceEEeec
Confidence 456888 566677999999999999986 45542 34567999999999999999999999
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.|+.+++||+.+++. ..+ ..|..+|..+.|-+......|+||+.|++|+.||++....+....+. ..++++..-.
T Consensus 92 ~Dk~~k~wDL~S~Q~-~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---eRvYa~Dv~~ 166 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQV-SQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP---ERVYAADVLY 166 (347)
T ss_pred cCCceEEEEccCCCe-eee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---ceeeehhccC
Confidence 999999999999965 555 68999999999988334458999999999999999988877764443 6677776543
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
.+++++..++.|.+|+++++.........+ -.-.+.|++..++ ....+.|+-+|.+.+..+..+....
T Consensus 167 ---pm~vVata~r~i~vynL~n~~te~k~~~Sp--------Lk~Q~R~va~f~d-~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 167 ---PMAVVATAERHIAVYNLENPPTEFKRIESP--------LKWQTRCVACFQD-KDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred ---ceeEEEecCCcEEEEEcCCCcchhhhhcCc--------ccceeeEEEEEec-CCceEeeeecceEEEEecCCCCccC
Confidence 367888899999999998775443221111 2235789998887 5566999999999999887753221
Q ss_pred CCCCCCCccccCCCCc--CCCcccceEEEEEcCCCCeeEe-ecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCC
Q 011160 241 STDFGQPADYFCPPNL--IGDEQVGITGLAFSDQSELLVS-YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
.+ ...|.... ....-..|++++|+|.-..|++ |+||.+.+||-+.
T Consensus 235 nF------tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda-------------------------- 282 (347)
T KOG0647|consen 235 NF------TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA-------------------------- 282 (347)
T ss_pred ce------eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh--------------------------
Confidence 11 11222211 1112356889999997555555 5588999999876
Q ss_pred CCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee
Q 011160 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
+..++..+.|..+ |++.+| +.+|.++|.+.
T Consensus 283 ------------r~kLk~s~~~~qp--Itcc~f-n~~G~ifaYA~ 312 (347)
T KOG0647|consen 283 ------------RTKLKTSETHPQP--ITCCSF-NRNGSIFAYAL 312 (347)
T ss_pred ------------hhhhhccCcCCCc--cceeEe-cCCCCEEEEEe
Confidence 3455566666665 889998 99999888653
No 101
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7e-29 Score=200.52 Aligned_cols=298 Identities=16% Similarity=0.191 Sum_probs=220.9
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 143 (492)
..|+.|++.|.+||+|+.||.|.|||+.+...- ..+.+|..+|++++|++ +|+.|++++.|..|.+||+..+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-r~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-RMLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-hhhhccccceeEEEecC--CCCEeeeecCCceeEEEeccCCCceeE
Confidence 789999999999999999999999999988864 44489999999999999 999999999999999999999987665
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
.. ...+|+.+.|+|...+.+++.-.+..-.+-++..++... +....... ......+..|++. |+++++|.
T Consensus 103 ir---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d~d~d-----ln~sas~~~fdr~-g~yIitGt 172 (405)
T KOG1273|consen 103 IR---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKDDDGD-----LNSSASHGVFDRR-GKYIITGT 172 (405)
T ss_pred EE---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCCCccc-----cccccccccccCC-CCEEEEec
Confidence 33 458999999999876666666555555566655432211 11110000 1111233468887 89999999
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (492)
..|.+.+++..+.+....... .....|..+.++..|++|+..+ |..|+.|++..-.....-
T Consensus 173 sKGkllv~~a~t~e~vas~ri--------------ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~---- 234 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRI--------------TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD---- 234 (405)
T ss_pred CcceEEEEecchheeeeeeee--------------chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc----
Confidence 999999999998875544222 1135788999999999988877 557999998742111000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc-CeEEEEecCCCeeeEEE
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVI 381 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d-g~i~iwd~~~~~~~~~~ 381 (492)
....+...++.-.+...-.+++| +.+|.|++.|+.. ..++||....|.+++.+
T Consensus 235 -------------------------~e~e~~~K~qDvVNk~~Wk~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 235 -------------------------GEVEPEHKLQDVVNKLQWKKCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred -------------------------CCcChhHHHHHHHhhhhhhheee-cCCccEEEeccccceeEEEEecCCcceeeee
Confidence 00112233333333333567777 9999999988754 57999999999999999
Q ss_pred ecCCc-eeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 382 EADRH-VVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 382 ~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
.|..+ ....+.|+|-...+++. ..|.+++|.....+.
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred cCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 98874 57889999999999888 689999999876433
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.6e-28 Score=186.74 Aligned_cols=305 Identities=16% Similarity=0.220 Sum_probs=224.3
Q ss_pred CCCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceee-eeeeEeecCccceEEEEEEcCCCCEEEEe
Q 011160 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLR-LGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (492)
Q Consensus 1 ~~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 79 (492)
|..|.|.|.|.+.++|+...+.||-....-.-+. .+-...... .-+.++-+.|.+.|+|.+|+|+|++|++|
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r-------~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR-------HAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcc-------cccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 3567899999999999999999987643111000 000000000 11224456799999999999999999999
Q ss_pred cCCCeEEEEECCCCce-----eeeeccCcCcceEEEEecC--CCCCceEEeec-CCCcEEEEecccCCeeeeEEeecCCC
Q 011160 80 SDDRRVILWDWKTERV-----KLSFHSGHNDNVFQAKIMP--FTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQG 151 (492)
Q Consensus 80 ~~d~~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~ 151 (492)
+.|++|++.-.....+ -..+ ..|.+.|..++|.. .+.+..|++++ .|..|++-|...+..... +.+|++
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a--~sghtg 184 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA--LSGHTG 184 (350)
T ss_pred CCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee--ecCCcc
Confidence 9999999976553322 1233 56999999999964 12456677665 466777777777666655 899999
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
.|.++- +-++ .+|++|+.|.+|++||++-..++..+.... +.+-.....|.+++..|. +.+|++|-.|....+|
T Consensus 185 hilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~---~~~glessavaav~vdps-grll~sg~~dssc~ly 258 (350)
T KOG0641|consen 185 HILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDF---HDGGLESSAVAAVAVDPS-GRLLASGHADSSCMLY 258 (350)
T ss_pred cEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcc---cCCCcccceeEEEEECCC-cceeeeccCCCceEEE
Confidence 998773 3345 589999999999999999888876654221 111124467999999998 7999999999999999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
|++.++.++. ...|...|.++.|+|...++.+++ +.+|++-|+......
T Consensus 259 dirg~r~iq~---------------f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~--------------- 308 (350)
T KOG0641|consen 259 DIRGGRMIQR---------------FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH--------------- 308 (350)
T ss_pred EeeCCceeee---------------eCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh---------------
Confidence 9999875433 345788999999999999999999 668999998763211
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
...+.....|... +..+.| +|..--+++.+.|.++.+|-+.
T Consensus 309 -------------------el~~~vv~ehkdk--~i~~rw-h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 -------------------ELPIMVVAEHKDK--AIQCRW-HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -------------------cCceEEEEeccCc--eEEEEe-cCccceeeeccCcceEEEeccC
Confidence 2234445567665 778888 9988888999999999999763
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.1e-29 Score=237.74 Aligned_cols=296 Identities=16% Similarity=0.204 Sum_probs=220.1
Q ss_pred CCCCCCCceEeecc--CcceEEEEeeccCcchhhhhhhcccccccceee-eeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 4 ASNNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVLR-LGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 4 ~~~~~~~~~l~t~~--~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
+.-+|++.++|||+ .||.++||+.+. +... ..+.... -+.+.++..|.+.|+|+.|+|||++||+|+
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~--vl~~--------~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDP--VLDE--------KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred EEecCCceeEecCCccccccceeecccc--ccch--------hhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 44579999999999 999999999772 1100 0111111 245567788999999999999999999999
Q ss_pred CCCeEEEEECCC----------Cc-------eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee
Q 011160 81 DDRRVILWDWKT----------ER-------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (492)
Q Consensus 81 ~d~~i~iwd~~~----------~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 143 (492)
.|+.|.||.... |. .....+.+|...|..++|+| ++.+|++++.|++|.||+..+.+....
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceeeee
Confidence 999999999772 00 02233478999999999999 999999999999999999999865554
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
+.+|...|..+.|.|-| ++|++-+.|++|++|++.+-...+.+..+.... .....+..+.|+|| |++|++..
T Consensus 167 --l~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----~~~T~f~RlSWSPD-G~~las~n 238 (942)
T KOG0973|consen 167 --LRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----PLTTFFLRLSWSPD-GHHLASPN 238 (942)
T ss_pred --eecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhC----CCcceeeecccCCC-cCeecchh
Confidence 99999999999999999 689999999999999977655554443221111 03345789999999 78888753
Q ss_pred ----CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-----CC------------eeEeec-C
Q 011160 224 ----SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-----SE------------LLVSYN-D 281 (492)
Q Consensus 224 ----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~-~ 281 (492)
.-..+.|.+-.+.+. ...+-+|..++.++.|+|. .+ .+|+|+ |
T Consensus 239 A~n~~~~~~~IieR~tWk~---------------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKV---------------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred hccCCcceeEEEecCCcee---------------eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 233566766544431 2234467889999999982 12 466777 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe
Q 011160 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (492)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg 361 (492)
++|.||.....+.. -.+..+..+ .|..++| +|||..|+++
T Consensus 304 rSlSVW~T~~~RPl-----------------------------------~vi~~lf~~----SI~DmsW-spdG~~Lfac 343 (942)
T KOG0973|consen 304 RSLSVWNTALPRPL-----------------------------------FVIHNLFNK----SIVDMSW-SPDGFSLFAC 343 (942)
T ss_pred ccEEEEecCCCCch-----------------------------------hhhhhhhcC----ceeeeeE-cCCCCeEEEE
Confidence 68999998543111 111222222 3899999 9999999999
Q ss_pred eccCeEEEEecCC
Q 011160 362 SDCGRIFIWKKKG 374 (492)
Q Consensus 362 ~~dg~i~iwd~~~ 374 (492)
|.||+|.+...+.
T Consensus 344 S~DGtV~~i~Fee 356 (942)
T KOG0973|consen 344 SLDGTVALIHFEE 356 (942)
T ss_pred ecCCeEEEEEcch
Confidence 9999999998854
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-30 Score=226.96 Aligned_cols=327 Identities=16% Similarity=0.167 Sum_probs=240.4
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEE
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (492)
.|.+++|.||++||.|++|+...-.-.. .-.....++.|...|+.++...+++.|+++|.|-+|+
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEP---------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCc---------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3566779999999999999986322110 0012367888999999999999999999999999999
Q ss_pred EEECCCCc--eeeeeccCcCcceEEEEe-cCCCCCceEEeecCCCcEEEEecccCCe--------eeeEEee-cCCCceE
Q 011160 87 LWDWKTER--VKLSFHSGHNDNVFQAKI-MPFTDDRSIVTCAADGQVRHAQILERGG--------VETKLLG-KHQGRAH 154 (492)
Q Consensus 87 iwd~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~~l~~~~~dg~v~iw~~~~~~~--------~~~~~~~-~~~~~v~ 154 (492)
+|+...+. +..++ ..|...|.|+++ .+ +...+|+|+.|+.|.+||+.++.. +....+. ++...|+
T Consensus 99 ~W~~~~~~~~c~sti-r~H~DYVkcla~~ak--~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTI-RTHKDYVKCLAYIAK--NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred EeecccCcchhHhhh-hcccchheeeeeccc--CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 99988773 44444 789999999999 66 888999999999999999987622 1122233 7889999
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecc
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~ 234 (492)
+++.++.| .+|++|+..+.+++||.++.+.+..++. |...|.++..+++ |..+++++.||+|++||+.
T Consensus 176 SLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrG----------HTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 176 SLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRG----------HTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred eeecCCcc-eEEEecCcccceEEeccccccceeeeec----------cccceEEEEEcCC-CCeEeecCCCceEEeeecc
Confidence 99999999 6899999999999999999998888774 6668999999998 7899999999999999999
Q ss_pred cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccC
Q 011160 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (492)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (492)
..+...+ ...|...|+++..+|+-..+++|+ ++.|+.=|+++....
T Consensus 244 qQrCl~T---------------~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~------------------ 290 (735)
T KOG0308|consen 244 QQRCLAT---------------YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS------------------ 290 (735)
T ss_pred ccceeee---------------EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhh------------------
Confidence 8764332 233667799999999999999998 668998888763111
Q ss_pred CCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC-------C-----------
Q 011160 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-------G----------- 375 (492)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~-------~----------- 375 (492)
...++. .. .|..+.. +.+.+-+-+++.|+.|+-|...- +
T Consensus 291 -------------------tlick~-da--Pv~~l~~-~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~ 347 (735)
T KOG0308|consen 291 -------------------TLICKE-DA--PVLKLHL-HEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNN 347 (735)
T ss_pred -------------------eEeecC-CC--chhhhhh-ccccCCceeeeccccceecCCccccccccCCCCCcccccCCC
Confidence 111110 00 0233332 22222224445566666665421 1
Q ss_pred -------eeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 376 -------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 376 -------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
.+-..++|- .+|...+.-.|.++++|-...|.+.+||+-..+..
T Consensus 348 ~~~~~~~tp~~vi~Gg-~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 348 HSCDLTNTPDSVIPGG-AAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKV 398 (735)
T ss_pred ccccccCCCceeccCc-hhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeeh
Confidence 111112221 23555566678899999999999999999776544
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=5.4e-29 Score=221.57 Aligned_cols=284 Identities=19% Similarity=0.245 Sum_probs=234.0
Q ss_pred eeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceee-eeccCcCcceEE-EEecCCCCCceEEeecCCC
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQ-AKIMPFTDDRSIVTCAADG 128 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~dg 128 (492)
+++.+.+.||...|..+++.+. ..++++|.||++++|+-...+.+. ....+|.+-|.. ++|.+ .++-.|++|+.|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccc
Confidence 4566889999999999998754 479999999999999976555433 333567777776 88876 3666799999999
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
+|.+|......+... +.+|...|++++...++ .+++|+.|.++++|-... +...+.. |...|.+
T Consensus 82 ~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~--l~~~l~g----------H~asVWA 145 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE--LVYSLQG----------HTASVWA 145 (745)
T ss_pred eEEEEecCCCCchhh--hhccccceeeeecCCcC--ceEecccccceEEecchh--hhcccCC----------cchheee
Confidence 999999988877766 99999999999988877 389999999999997543 3333332 7778999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEe
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (492)
+++-|.+ .+++|+.|.+|++|.-.+ ....+.+|...|+.+++-+++.+|-++.|+.|++|+
T Consensus 146 v~~l~e~--~~vTgsaDKtIklWk~~~-----------------~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 146 VASLPEN--TYVTGSADKTIKLWKGGT-----------------LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWD 206 (745)
T ss_pred eeecCCC--cEEeccCcceeeeccCCc-----------------hhhhhccchhheeeeEEecCCCeEeecCCceEEEEe
Confidence 9999973 899999999999998743 234566799999999999999888888899999999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
+. ...+..+.+|.+- +.++.. .+++..++++++|++++
T Consensus 207 ~~---------------------------------------ge~l~~~~ghtn~--vYsis~-~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 207 LD---------------------------------------GEVLLEMHGHTNF--VYSISM-ALSDGLIVSTGEDRTLR 244 (745)
T ss_pred cc---------------------------------------CceeeeeeccceE--EEEEEe-cCCCCeEEEecCCceEE
Confidence 95 3577888899886 888886 67888999999999999
Q ss_pred EEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
||+.. ++.+.+.-..-.|+++.+-++|. +++|+.||.|+||....
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 99975 77788875555799999988887 66788899999998874
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=197.72 Aligned_cols=249 Identities=18% Similarity=0.206 Sum_probs=194.8
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC--CCCEEEEecCC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDD 82 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d 82 (492)
...-.|++|||+++|++|+|+....+... .++.+|.||.++|..++|.. -|.+||+++.|
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s------------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQS------------------KLLAELTGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCc------------------eeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence 33446899999999999999999865431 35588999999999999965 79999999999
Q ss_pred CeEEEEECCCCceeeee-ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC-CeeeeEEeecCCCceEEEEEcC
Q 011160 83 RRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
|.|.||.-++++-.... ...|...|++++|.|..-|-.|++++.||.|.|.+++.. .....+....|.-.|++++|.|
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 99999998877532211 257999999999999777888999999999999999876 4444455778999999999998
Q ss_pred C---C----------CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC---CceEEEecC
Q 011160 161 G---S----------PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN---ANLFAVAGS 224 (492)
Q Consensus 161 ~---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~ 224 (492)
. | .+.|++|+.|..|+||+...+.....-.. ++ |..-|+.++|.|.. ...|++++.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l------~~--H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL------EG--HKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh------hh--cchhhhhhhhccccCCCceeeEEecC
Confidence 6 3 14589999999999999998744322211 12 66689999999973 357999999
Q ss_pred CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCC
Q 011160 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 225 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (492)
||+|.||..+...... ...++......+..+.||..|.+|+.++ ++++.+|.-..
T Consensus 232 Dg~viIwt~~~e~e~w------------k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEPW------------KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCcEEEEEecCccCcc------------cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 9999999887321111 1223333467899999999999998877 66899997654
No 107
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.8e-28 Score=225.18 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=155.7
Q ss_pred eEeecCccceEEEEEEcCC-CCEEEEecCCCeEEEEECCCCce--------eeeeccCcCcceEEEEecCCCCCce-EEe
Q 011160 54 YAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV--------KLSFHSGHNDNVFQAKIMPFTDDRS-IVT 123 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~-l~~ 123 (492)
...+.+|.+.|.+++|+|+ +.+||||+.|++|+||++.++.. +..+ .+|...|.+++|+| ++.. |++
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P--~g~~iLaS 143 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNP--MNYYIMCS 143 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECC--CCCeEEEE
Confidence 4678999999999999996 78999999999999999976421 2233 68999999999999 7765 578
Q ss_pred ecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
++.|+.|++||+.++..... +. |...|.+++|+|+| .+|++++.|+.|++||+++++.+..+..+.. ....
T Consensus 144 gS~DgtIrIWDl~tg~~~~~--i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-----~~~s 214 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQ--IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-----GKNT 214 (568)
T ss_pred EeCCCeEEEEECCCCcEEEE--Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecccC-----Ccee
Confidence 99999999999988775543 33 56789999999999 5889999999999999999988776654321 0011
Q ss_pred cceEEEEEcCCCCceEEEecCC----CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee
Q 011160 204 VNLNAIAIDPRNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (492)
..+....|+++ +.+|++++.+ +.|++||+++... +... .....+...+......+++.++++|
T Consensus 215 ~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~--------pl~~----~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 215 KNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTS--------ALVT----MSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCC--------ceEE----EEecCCccceEEeeeCCCCCEEEEE
Confidence 12333456677 5677776655 4799999986321 0000 0111122333334445568888887
Q ss_pred c-CCcEEEEecCCC
Q 011160 280 N-DEFIYLFTQDMG 292 (492)
Q Consensus 280 ~-~~~i~~~d~~~~ 292 (492)
. |+.|++|++..+
T Consensus 282 kGD~tIr~~e~~~~ 295 (568)
T PTZ00420 282 KGDGNCRYYQHSLG 295 (568)
T ss_pred ECCCeEEEEEccCC
Confidence 6 678999999764
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.5e-28 Score=197.61 Aligned_cols=308 Identities=16% Similarity=0.211 Sum_probs=216.4
Q ss_pred eEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee-eeec--cCcCcceEEEEecCCCCCceEEe-ecCCCc
Q 011160 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFH--SGHNDNVFQAKIMPFTDDRSIVT-CAADGQ 129 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~ 129 (492)
...|++|.+.|++++|+.||++|||++.|++|+||++...... ..++ .-.-+..+.++|+| |-+-++. +-....
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--CcceEEEEEccCCE
Confidence 3578999999999999999999999999999999999864321 0010 01122467899999 7765554 445568
Q ss_pred EEEEecccCCe---eee-------EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCc
Q 011160 130 VRHAQILERGG---VET-------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (492)
Q Consensus 130 v~iw~~~~~~~---~~~-------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (492)
+++|.+..... ... ..-..|.-.+..+-....+ .+|++++.|..|.+|+++ |+.+..+...+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq------ 228 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQ------ 228 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeecccc------
Confidence 99998754321 100 0122355566666666666 689999999999999999 77776665432
Q ss_pred ceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee
Q 011160 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (492)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (492)
..-+..+.+|+ |+++++++.--.|++|.+--.+-- .++.-.....+.+|...|..++|+++.+.+++.
T Consensus 229 ----~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG-------~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 229 ----SSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDG-------TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ----ccccceeeCCC-CcEEEEecCCCCceEEEEEeccCc-------chhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 23466789998 789999998889999987543211 111111223456799999999999999999999
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCcee--eccccceeeeeEEeecCCCc
Q 011160 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPKCE 356 (492)
Q Consensus 280 ~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~s~~g~ 356 (492)
+ ||++++||.+-......-+ ..++.. .-|.....-..+.. +|+|+
T Consensus 297 SkDG~wriwdtdVrY~~~qDp-------------------------------k~Lk~g~~pl~aag~~p~RL~l-sP~g~ 344 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDP-------------------------------KILKEGSAPLHAAGSEPVRLEL-SPSGD 344 (420)
T ss_pred ecCCcEEEeeccceEecCCCc-------------------------------hHhhcCCcchhhcCCCceEEEe-CCCCc
Confidence 9 7899999987543221100 111111 11111111236777 99999
Q ss_pred EEEEeeccCeEEEEecCCCeeeEEEe-cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 357 YVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 357 ~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
.||... ...++++..++|+....++ .|...|.+++|+++|++++|+| |..+++..-..+
T Consensus 345 ~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 345 SLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred EEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 998754 5679999999998876664 5889999999999999999997 788888764444
No 109
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.3e-29 Score=207.33 Aligned_cols=270 Identities=15% Similarity=0.257 Sum_probs=203.1
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCC-CCCceEEeecCCCcEEEEeccc
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTCAADGQVRHAQILE 137 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~v~iw~~~~ 137 (492)
.|...|.++... +++|+||++||.+++||.. |+....+ .+|.++|.+++|.-. .....|++++.|.++++|.+..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 378888888877 7899999999999999965 7777777 799999998888651 1223599999999999999987
Q ss_pred CCeeee--EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 138 RGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 138 ~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
+..... ....+|...|.+++..+++ ..+++|+.|.+|.+|+..+.. ...+.. +.. -+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~-~~~~E~--------------~s~---~r-- 237 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDE-EDELES--------------SSN---RR-- 237 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCc-cccccc--------------cch---hh--
Confidence 765332 2244999999999999999 589999999999999933221 111110 000 00
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~ 294 (492)
+..+ . .........|.....+|..+|.++.|++ ...+++++ |-+|+.||+.++
T Consensus 238 ------------------rk~~-~----~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg-- 291 (423)
T KOG0313|consen 238 ------------------RKKQ-K----REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG-- 291 (423)
T ss_pred ------------------hhhh-h----hhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc--
Confidence 0000 0 0001111235566778999999999998 56778888 558999999985
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
....++.+... ++++.+ +|..++||+|+.|..|++||.++
T Consensus 292 ------------------------------------~~~~~~~~~ks---l~~i~~-~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 292 ------------------------------------GLKSTLTTNKS---LNCISY-SPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred ------------------------------------cceeeeecCcc---eeEeec-ccccceeeecCCCCceeecCCCC
Confidence 33334444433 788998 99999999999999999999876
Q ss_pred Ce---eeEEEecCCceeEEEeecCCCC-eEEEeeCCCCEEEeccCCCCC
Q 011160 375 GE---LIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 375 ~~---~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 419 (492)
+. ...+|.+|.+.|.++.|+|... +|++++.|+++++||+.+.+.
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA 380 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC
Confidence 52 3478899999999999999876 589999999999999988763
No 110
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.9e-28 Score=225.18 Aligned_cols=253 Identities=16% Similarity=0.226 Sum_probs=186.4
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceee------------eeccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL------------SFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
|-..|.....++++..+++++.+.....|+...+..+. ..+.+|.+.|++++|+|+ ++.+|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence 44556667777787777888777777788765443221 123689999999999984 56799999999
Q ss_pred CcEEEEecccCCe-----eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCccee
Q 011160 128 GQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (492)
Q Consensus 128 g~v~iw~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (492)
++|++|++..+.. .....+.+|...|.+++|+|++.++|++++.|+.|++||+++++....+.. +
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~----------h 167 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC----------H 167 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC----------C
Confidence 9999999976532 122347899999999999998767899999999999999999877665543 4
Q ss_pred ecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
...|.+++|+|+ +.+|++++.|+.|++||+++++..
T Consensus 168 ~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v------------------------------------------- 203 (493)
T PTZ00421 168 SDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIV------------------------------------------- 203 (493)
T ss_pred CCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEE-------------------------------------------
Confidence 457999999998 789999999999999999875311
Q ss_pred cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee
Q 011160 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
..+.+|.... +..+.| .+++..+++++
T Consensus 204 ---------------------------------------------------~tl~~H~~~~-~~~~~w-~~~~~~ivt~G 230 (493)
T PTZ00421 204 ---------------------------------------------------SSVEAHASAK-SQRCLW-AKRKDLIITLG 230 (493)
T ss_pred ---------------------------------------------------EEEecCCCCc-ceEEEE-cCCCCeEEEEe
Confidence 1112222210 223444 66666666543
Q ss_pred ----ccCeEEEEecCCCe-eeEEEecC-CceeEEEeecCCCCeEEEeeC-CCCEEEeccCCCCCC
Q 011160 363 ----DCGRIFIWKKKGGE-LIRVIEAD-RHVVNCIEPHPHSTVLASSGI-ESDIKILTPNAADRA 420 (492)
Q Consensus 363 ----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~ 420 (492)
.|+.|++||+.+.. ++.....+ ...+....|++++++|++++. |+.|++|++..++..
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 47999999998754 33433333 345666789999999998874 999999999987643
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=6.5e-29 Score=210.70 Aligned_cols=251 Identities=18% Similarity=0.295 Sum_probs=196.8
Q ss_pred CccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeee---------eccCcCcceEEEEecCCCCCceEEeecCCC
Q 011160 59 KHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLS---------FHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 128 (492)
.|.+.|+.+.+-|+. .++|+.+..+.|.|||..+...... .+.+|...-++++|++. ..-.|++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~-~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ-QEGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc-cceeEeeccCCC
Confidence 499999999999965 6777888899999999865322111 23789988899999985 456789999999
Q ss_pred cEEEEecccCCe-----eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC--CccceeecCCCCCCCcce
Q 011160 129 QVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG--AATELFTCRPIDDRRNYM 201 (492)
Q Consensus 129 ~v~iw~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~ 201 (492)
.|++||+..... .....+.+|...|..++|++....+|++++.|+.+.|||+|++ +..... ..
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~----------~a 270 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV----------KA 270 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc----------cc
Confidence 999999976433 3345578999999999999988889999999999999999963 222222 22
Q ss_pred eecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC
Q 011160 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (492)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (492)
|...++|++|+|.++.+||+|+.|++|++||+|+.+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------------------------------------- 307 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------------------------------------- 307 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------------------------------
Confidence 7779999999999889999999999999999998541
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEE
Q 011160 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVS 360 (492)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~s 360 (492)
.+.++.+|... |.+|.| +|+. ..||+
T Consensus 308 --------------------------------------------------~lh~~e~H~de--v~~V~W-SPh~etvLAS 334 (422)
T KOG0264|consen 308 --------------------------------------------------PLHTFEGHEDE--VFQVEW-SPHNETVLAS 334 (422)
T ss_pred --------------------------------------------------CceeccCCCcc--eEEEEe-CCCCCceeEe
Confidence 23445555554 666666 6654 46777
Q ss_pred eeccCeEEEEecCCC--------------eeeEEEecCCceeEEEeecCCCCe-EEEeeCCCCEEEeccCC
Q 011160 361 GSDCGRIFIWKKKGG--------------ELIRVIEADRHVVNCIEPHPHSTV-LASSGIESDIKILTPNA 416 (492)
Q Consensus 361 g~~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~ 416 (492)
++.|+.+.|||+..- +++..-.||...|..+.|+|...+ |+|++.|+.+.||.+..
T Consensus 335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 778888888887431 334555789999999999999885 77889999999999874
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=2.5e-29 Score=215.45 Aligned_cols=282 Identities=16% Similarity=0.231 Sum_probs=230.7
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce---eeeec-cCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV---KLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
.|..-|.++.+|...+++.||+. |.|+|||+..... +..+. ......|.++...| ||+.|++|+.-.++.|||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeeee
Confidence 58899999999999999999987 6799999975422 12221 12345788999999 999999999999999999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
+..........+....-....++.+||. ++.++++.||.|.|||+.+...+..|+. |...+.||.++++
T Consensus 494 LAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqG----------htDGascIdis~d 562 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDGASCIDISKD 562 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccC----------CCCCceeEEecCC
Confidence 9887654444455444567889999999 6889999999999999999998888875 4557899999998
Q ss_pred CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-CcEEEEecCCCC
Q 011160 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGL 293 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~~d~~~~~ 293 (492)
|..|.+|+-|.+||.||+++++......| ...|.++.++|++.+|+.|.. +.+.+.....
T Consensus 563 -GtklWTGGlDntvRcWDlregrqlqqhdF----------------~SQIfSLg~cP~~dWlavGMens~vevlh~sk-- 623 (705)
T KOG0639|consen 563 -GTKLWTGGLDNTVRCWDLREGRQLQQHDF----------------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-- 623 (705)
T ss_pred -CceeecCCCccceeehhhhhhhhhhhhhh----------------hhhheecccCCCccceeeecccCcEEEEecCC--
Confidence 78999999999999999999876544333 568999999999999999994 4677776543
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
.....+.-|... |.++.| .+.|+++++.+.|..+..|.+.
T Consensus 624 -------------------------------------p~kyqlhlheSc--VLSlKF-a~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 624 -------------------------------------PEKYQLHLHESC--VLSLKF-AYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred -------------------------------------ccceeecccccE--EEEEEe-cccCceeeecCchhhhhhccCc
Confidence 122333445554 999999 9999999999999999999999
Q ss_pred CCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
-|..+...+ ....|.++..|.|.++++||+.|+.-.||.+
T Consensus 664 yGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 664 YGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 998887776 3567999999999999999999998888875
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.4e-27 Score=210.65 Aligned_cols=248 Identities=13% Similarity=0.178 Sum_probs=199.2
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCc-cceEEEEEEcCCCCEEEEecC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~ 81 (492)
+++|+...+.||.+-.||.|-||++..+=+. ...+.++ ...|.+++|++ +..|.+.+.
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~--------------------~~vi~g~~drsIE~L~W~e-~~RLFS~g~ 88 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL--------------------EPVIHGPEDRSIESLAWAE-GGRLFSSGL 88 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCcee--------------------eEEEecCCCCceeeEEEcc-CCeEEeecC
Confidence 4578888999999999999999999864333 2455555 46899999995 556888889
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
+|.|.-||+.+++.+..+ ....+.|++++.+| .++.++.|+.||.+..++...+.......+...+++|.+++|+|+
T Consensus 89 sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNI-DSNGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred CceEEEEecccCceeEEe-cCCCcceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence 999999999999998887 67788999999999 899999999999888888877776666667777899999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
+ ..+++|+.||.|++||...+..+......-....++ ...-|.++.|-.+ ..|++|..-|+|.+||...+.+.+.
T Consensus 166 ~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~--~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 166 G-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR--EPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred c-cEEEecccCceEEEEEcCCCceEEEeeecccccccC--CceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhh
Confidence 9 468999999999999999988776332211111111 3345788888865 5899999999999999999876554
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~ 294 (492)
...|...|.+++..+++.++++++ ++.|..|...+...
T Consensus 241 ---------------~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 241 ---------------HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred ---------------hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 334788999999999988877777 77888887776644
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-27 Score=192.85 Aligned_cols=281 Identities=16% Similarity=0.222 Sum_probs=215.6
Q ss_pred CCCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 1 ~~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
|.++.|+++|.++++++.|-+++|||..+|+.+ +++..++-.|..++|......++.++
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---------------------~ti~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---------------------KTINSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---------------------eEeecccccccEEEEecCCceEEEcc
Confidence 346789999999999999999999999999887 67777777899999987776676666
Q ss_pred C--CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEE
Q 011160 81 D--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 81 ~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 158 (492)
. |.+||.-++.+.+.++-| .||...|.+++.+| -++.+++++.|++|++||++..++.....+. .-..++|
T Consensus 76 tk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~----~~pi~Af 148 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSP--KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS----GRPIAAF 148 (311)
T ss_pred CCCCCceEEEEeecCceEEEc-CCCCceEEEEEecC--CCCeEEecccCCeEEeeEecCCCCceEEecC----CCcceeE
Confidence 6 889999999999988777 89999999999999 7899999999999999999987776543222 2245789
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCC--ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 159 EPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
.|.| -++|++.....|++||++.-. +...+..... .....+.+.|+|+ |+.++.++..+.+++.|.-.+
T Consensus 149 Dp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~-------~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 149 DPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDN-------DEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred CCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCC-------CccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCC
Confidence 9999 678888777799999998652 3333333211 3457899999998 788888889999999999888
Q ss_pred cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCC
Q 011160 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (492)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (492)
......... .....--....|.|+++++++++ +++|.+|++.++
T Consensus 220 ~~~~tfs~~------------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg----------------------- 264 (311)
T KOG1446|consen 220 TVKSTFSGY------------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG----------------------- 264 (311)
T ss_pred cEeeeEeec------------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC-----------------------
Confidence 754432221 01111226788999999999999 579999999885
Q ss_pred CCCCCCCCCCCCccccCCceeec-cccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 316 HTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
..+..+.+ +... +.++.| .|.-..++++ +..+.+|=..
T Consensus 265 ---------------~~v~~~~~~~~~~--~~~~~f-nP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 265 ---------------KKVAVLRGPNGGP--VSCVRF-NPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ---------------cEeeEecCCCCCC--cccccc-CCceeeeeec--CceEEEEecc
Confidence 33444454 3333 677787 8876666655 5567777543
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=6.3e-28 Score=193.24 Aligned_cols=308 Identities=17% Similarity=0.222 Sum_probs=225.4
Q ss_pred ecCccceEEEEEEcC-CCCEEEEecCCCeEEEEECCCCce----------ee----eeccCcCcceEEEEecCCCCCceE
Q 011160 57 LDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERV----------KL----SFHSGHNDNVFQAKIMPFTDDRSI 121 (492)
Q Consensus 57 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~----------~~----~~~~~~~~~v~~~~~~~~~~~~~l 121 (492)
...|.+.|+++...+ .|+++++|+.||.|.|||++.... +. .-..+|.-.|..+.|-|+ |..++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCcee
Confidence 346999999999987 689999999999999999975431 11 112468889999999996 66788
Q ss_pred EeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC--cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCc
Q 011160 122 VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (492)
Q Consensus 122 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (492)
.+++.|.++++||..+.+..... ...+.|++-+++|-.. .++++|..+-.|++.|+..|.....+..
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F---~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG-------- 186 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDF---KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG-------- 186 (397)
T ss_pred ecccccceEEEeecccceeeEEe---ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc--------
Confidence 89999999999999887665542 2446788888887432 4677888888999999999998888765
Q ss_pred ceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc-cCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEe
Q 011160 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW-DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (492)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 278 (492)
|...|.++.|+|.....|++|+.||.|++||++...- ...+........ ........|.+.+.+++|..++.++++
T Consensus 187 --Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~-p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 187 --HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP-PILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred --ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC-ccccccccccceeeeeeecccchhhhh
Confidence 5668999999999777899999999999999986521 000000000111 111234467899999999999999988
Q ss_pred ec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcE
Q 011160 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (492)
Q Consensus 279 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~ 357 (492)
++ ++.+++|+...+....... .+....-+.|-. ..+.+. +...
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~------------------------------g~~~~n~~~~~~-~~~~~~-----~s~v 307 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREF------------------------------GPIIHNQTTSFA-VHIQSM-----DSDV 307 (397)
T ss_pred ccCccceEEeecccCccccccc------------------------------ccccccccccce-EEEeec-----ccce
Confidence 77 7799999998864322100 000000001100 012211 2222
Q ss_pred EEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 358 l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
++---.++.+.++++-+|..++.+..|...|.+.++-|+-+.+.++..|+.|..|.+.
T Consensus 308 fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 308 FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 3333345889999999999999999998899999999999999999999999999983
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.2e-28 Score=206.54 Aligned_cols=290 Identities=11% Similarity=0.166 Sum_probs=229.5
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeeeccCcCcceEEEEecCCCCCc-eEEeecCCCcEEEEeccc
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILE 137 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~ 137 (492)
.+.|+++.|+|...+|++++.|++++||.+... ..+..+ .-...+|.+.+|.| +|. .+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecC--CCceEEEecccceEEEEeeccc
Confidence 578999999999999999999999999998633 233333 23456899999999 888 899999999999999988
Q ss_pred CCeeeeEEeecCC-CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 138 RGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 138 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
.+........++. ..+....++|++ ++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+ +
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~K-----------ieG~v~~~~fsSd-s 356 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFK-----------IEGVVSDFTFSSD-S 356 (514)
T ss_pred cccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheee-----------eccEEeeEEEecC-C
Confidence 8766655566655 456778899999 588999999999999999999998887 4557999999988 6
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-CcEEEEecCCCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGP 295 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~~d~~~~~~~ 295 (492)
..|++.+.+|.|++||+++.... ........-.-++++.++++.+||+|++ |-|-|||.++....
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~--------------~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCL--------------HRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceE--------------EEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 78888888999999999987532 2222222334567888899999999995 57999997764221
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec--cCeEEEEecC
Q 011160 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIFIWKKK 373 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~--dg~i~iwd~~ 373 (492)
.. .+++.++..-... |+++.| +|++++||.+|. ...+++-.+.
T Consensus 423 ~~--------------------------------PkPik~~dNLtt~--Itsl~F-n~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 423 TN--------------------------------PKPIKTVDNLTTA--ITSLQF-NHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred CC--------------------------------CCchhhhhhhhee--eeeeee-CcchhhhhhhhhccccceEEEecc
Confidence 11 2344444444433 899998 999999998764 5689999998
Q ss_pred CCeeeEEEecCC---ceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 374 GGELIRVIEADR---HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 374 ~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
+......+.... +.|++|+|||.+.+||.|..+|.+.+|.+.
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 887777665433 459999999999999999999999999874
No 117
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=3.1e-28 Score=214.77 Aligned_cols=310 Identities=21% Similarity=0.262 Sum_probs=220.2
Q ss_pred EEEEcC---CCCEEEEecCCCeEEEEECCCCcee-----eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc
Q 011160 66 TVSFNT---DGDILISGSDDRRVILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (492)
Q Consensus 66 ~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 137 (492)
+..|++ ....|+.+.++|.|.++|....... ......|.+.|..+.|.| ....|++++.|.++++||+..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeecc
Confidence 356765 3468899999999999998654322 123367999999999999 889999999999999999999
Q ss_pred CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc--cee--------ec-------CCCCCCCcc
Q 011160 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELF--------TC-------RPIDDRRNY 200 (492)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~--------~~-------~~~~~~~~~ 200 (492)
...+....+.+|...|.+++|.|..+.+|++|+.||.|.|||++....- ..+ .. .........
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 8887777788999999999999999999999999999999999865411 000 00 000011111
Q ss_pred eeecceEE---EEEcCCCCceEEEecC-CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCee
Q 011160 201 MTVVNLNA---IAIDPRNANLFAVAGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (492)
Q Consensus 201 ~~~~~v~~---~~~~p~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 276 (492)
++...|.+ +.+..| ...|++++. |+.|++||+++......... ....... ........+.++.....|.+|
T Consensus 212 A~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep---~~~~~~~-t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEP---RGSDKYP-THSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCC---CcccCcc-CcccceeeeEEEEecCCCCeE
Confidence 22333333 344445 468888776 99999999998764433211 1100000 012224567888888877655
Q ss_pred -EeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC
Q 011160 277 -VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (492)
Q Consensus 277 -~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g 355 (492)
|+|.|+.|++|++.... ..++..+.++........-. .+|++
T Consensus 287 ~AsCtD~sIy~ynm~s~s------------------------------------~sP~~~~sg~~~~sf~vks~-lSpd~ 329 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLS------------------------------------ISPVAEFSGKLNSSFYVKSE-LSPDD 329 (720)
T ss_pred EEEecCCcEEEEeccccC------------------------------------cCchhhccCcccceeeeeee-cCCCC
Confidence 56668999999998632 22334455554432222223 38999
Q ss_pred cEEEEeeccCeEEEEecCCCee-eEEEecCCceeEEEeecCCCC-eEEEeeCCCCEEEeccCCCCC
Q 011160 356 EYVVSGSDCGRIFIWKKKGGEL-IRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 356 ~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 419 (492)
.+|++|+.|...++|.+.+.+. ...+.+|.-.|++++|.|..- -+++++.|.+++||++..+-.
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 9999999999999999987654 466789999999999988543 477779999999999976543
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-29 Score=220.73 Aligned_cols=296 Identities=19% Similarity=0.242 Sum_probs=232.1
Q ss_pred ccceEE---EEEEc-CCCCEEEEecCCCeEEEEECCCCce------eeeeccCcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 60 HRGCVN---TVSFN-TDGDILISGSDDRRVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 60 h~~~v~---~~~~s-~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
|...|. .+..+ |.+++|+|||.||.|++|++..... ...+ ..|...|+.++... +++.|++++.|-+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~--~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCG--NGKTLISASSDTT 96 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhc--CCCceEEecCCce
Confidence 444444 44444 4677899999999999999864332 3344 67999999999987 8999999999999
Q ss_pred EEEEecccCCeeeeEEeecCCCceEEEEE-cCCCCcEEEEEcCCCcEEEEeCCCCCc--cceeecCCCCCCCcceeecce
Q 011160 130 VRHAQILERGGVETKLLGKHQGRAHKLAI-EPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v 206 (492)
|++|+...+.......+..|.+.|.|+++ .++. .++++||-|+.|.+||++++.. +..+......... ..+...|
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~-sG~k~si 174 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG-SGPKDSI 174 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCC-CCCccce
Confidence 99999988754444558899999999999 6666 6899999999999999998843 3333222222221 0256689
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (492)
++++.++. +..|++|+..+.+++||.++.+.. ..+.+|...|..+..+++|..+++++ |++|+
T Consensus 175 YSLA~N~t-~t~ivsGgtek~lr~wDprt~~ki---------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 175 YSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKI---------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred eeeecCCc-ceEEEecCcccceEEeccccccce---------------eeeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence 99999997 789999999999999999998642 22347899999999999999888887 77999
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
+||+.. ..++.++..|... |.++.. +|+-..+++|+.||
T Consensus 239 lWdLgq--------------------------------------QrCl~T~~vH~e~--VWaL~~-~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 239 LWDLGQ--------------------------------------QRCLATYIVHKEG--VWALQS-SPSFTHVYSGGRDG 277 (735)
T ss_pred eeeccc--------------------------------------cceeeeEEeccCc--eEEEee-CCCcceEEecCCCC
Confidence 999987 5778889999987 888888 99999999999999
Q ss_pred eEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
.|+.=|+.+......+-....+|..+..+...+-+-++..|+.|+-|..+..
T Consensus 278 ~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 278 NIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred cEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9999999885433333334566788877765555566778999999987654
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-27 Score=218.09 Aligned_cols=286 Identities=13% Similarity=0.189 Sum_probs=222.1
Q ss_pred cCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc
Q 011160 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (492)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 136 (492)
.+|....+.|+|.|+|.+|++++.||.|++|+.... +....+ ..+...|.+++. .+.+|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~----~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIAC----YSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEee----cccceEEeeccceEEEeeCC
Confidence 368999999999999999999999999999998766 443444 337778888887 55699999999999999998
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
++..-.. +...+-++++++|+-+| .+++.|+.|-.|++.++.+......+.. +..+|.++.|+|. +
T Consensus 85 s~~~~~i--L~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrg----------h~apVl~l~~~p~-~ 150 (933)
T KOG1274|consen 85 SGEEDTI--LARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRG----------HDAPVLQLSYDPK-G 150 (933)
T ss_pred CCCccce--eeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecc----------cCCceeeeeEcCC-C
Confidence 8766533 56677899999999999 5889999999999999998888777764 6679999999998 7
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-CCeeEeecCCcEEEEecCCCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGP 295 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~i~~~d~~~~~~~ 295 (492)
++||+.+-||.|++|++..+.....+.--.+. ........+..++|+|+ |++++.+.++.|++|+..+.
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-------n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w--- 220 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-------NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW--- 220 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCcc-------ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc---
Confidence 99999999999999999988765543221111 11111456788999998 56677777999999998874
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC
Q 011160 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~ 375 (492)
.....+........+..+.| +|+|+|||+++.||.|.|||+.+.
T Consensus 221 -----------------------------------e~~f~Lr~~~~ss~~~~~~w-sPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 221 -----------------------------------ELQFKLRDKLSSSKFSDLQW-SPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred -----------------------------------eeheeecccccccceEEEEE-cCCCcEEeeeccCCcEEEEecccc
Confidence 23333433333323778888 999999999999999999999883
Q ss_pred eeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEe
Q 011160 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (492)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (492)
+. ......|.+++|.|+.+-+-.-..-|...+|
T Consensus 265 ~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 265 ER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred hh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 22 2223579999999998866554445554444
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=7e-27 Score=209.72 Aligned_cols=293 Identities=12% Similarity=0.124 Sum_probs=206.8
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEE-EEecCCCeEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILW 88 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iw 88 (492)
+.++++++.|+.|++||+.+++.+ ..+..|.. +.+++|+|+++.+ ++++.++.|++|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~---------------------~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~ 58 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT---------------------RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVI 58 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE---------------------EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEE
Confidence 357889999999999999988765 45555543 6789999999876 567788999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEee-cCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
|..+++....+ ..+. .+..++|+| +++.++++ +.++.|++||+.+...+.. +. +...+.+++|+|++. +++
T Consensus 59 d~~~~~~~~~~-~~~~-~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~--~~-~~~~~~~~~~~~dg~-~l~ 130 (300)
T TIGR03866 59 DLATGEVIGTL-PSGP-DPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAE--IP-VGVEPEGMAVSPDGK-IVV 130 (300)
T ss_pred ECCCCcEEEec-cCCC-CccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeE--ee-CCCCcceEEECCCCC-EEE
Confidence 99988876666 3333 356789999 88877654 5689999999987655443 32 234568899999994 677
Q ss_pred EEcCCC-cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE-EEecCCCeEEEEecccccccCCCCCC
Q 011160 168 TCGEDG-LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYTRLYDIRKYKWDGSTDFG 245 (492)
Q Consensus 168 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~ 245 (492)
++..++ .+.+||.++++....... ...+..++|+|+ +.++ +++..++.|++||+++++......+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLV-----------DQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEc-----------CCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 776654 567789888765543321 123567899998 4555 55557999999999987654332211
Q ss_pred CCccccCCCCcCCCcccceEEEEEcCCCCeeEee--cCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
.+ .. .........++|+|++++++.+ .++.+.+||..+++
T Consensus 199 ~~-------~~-~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~------------------------------ 240 (300)
T TIGR03866 199 IP-------GV-HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE------------------------------ 240 (300)
T ss_pred cc-------cc-ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc------------------------------
Confidence 00 00 0011224568899999975443 35689999987631
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe-eccCeEEEEecCCCeeeEEEecCCceeEEEeecC
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (492)
....+. +... +.++.| +|+|++|+++ +.+|.|++||+.+++++..++.. ...+.++++|
T Consensus 241 --------~~~~~~-~~~~--~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 241 --------VLDYLL-VGQR--VWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred --------EEEEEE-eCCC--cceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 122221 1122 678888 9999999886 46899999999999999999865 5568888875
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=203.49 Aligned_cols=331 Identities=19% Similarity=0.228 Sum_probs=238.4
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.|.++| -++||.++|.|.||+..+.+.. +....|.+.|.+++...+|.+| +|+.|+
T Consensus 252 v~F~eng-dviTgDS~G~i~Iw~~~~~~~~---------------------k~~~aH~ggv~~L~~lr~Gtll-SGgKDR 308 (626)
T KOG2106|consen 252 VTFLENG-DVITGDSGGNILIWSKGTNRIS---------------------KQVHAHDGGVFSLCMLRDGTLL-SGGKDR 308 (626)
T ss_pred EEEcCCC-CEEeecCCceEEEEeCCCceEE---------------------eEeeecCCceEEEEEecCccEe-ecCccc
Confidence 3455544 4789999999999999866655 3344899999999999999754 599999
Q ss_pred eEEEEECCCCc-----------eeee----------------------------eccCcCcceEEEEecCCCCCceEEee
Q 011160 84 RVILWDWKTER-----------VKLS----------------------------FHSGHNDNVFQAKIMPFTDDRSIVTC 124 (492)
Q Consensus 84 ~i~iwd~~~~~-----------~~~~----------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~ 124 (492)
.|..||-.-.+ .++. ...+|......++.+| +...++++
T Consensus 309 ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp--s~~q~~T~ 386 (626)
T KOG2106|consen 309 KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP--SKNQLLTC 386 (626)
T ss_pred eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC--Chhheeec
Confidence 99999832100 0000 0146778889999999 89999999
Q ss_pred cCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeec
Q 011160 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (492)
Q Consensus 125 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
+.|+.+++|+ ..+....+. ...++.|+.|+|.| .++.|+..|...+.|.++...+..-. ...
T Consensus 387 gqdk~v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~-----------d~~ 448 (626)
T KOG2106|consen 387 GQDKHVRLWN--DHKLEWTKI---IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHT-----------DNE 448 (626)
T ss_pred cCcceEEEcc--CCceeEEEE---ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEe-----------cCC
Confidence 9999999999 333333322 34788999999998 68999999999999999976665544 345
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-c
Q 011160 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-F 283 (492)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~ 283 (492)
+++++.|+|+ |.+||.|+.|+.|++|.+....... ...-..+..+|+.+.|++|+++|.+-+-+ .
T Consensus 449 ~ls~v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~~y-------------~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 449 QLSVVRYSPD-GAFLAVGSHDNHIYIYRVSANGRKY-------------SRVGKCSGSPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred ceEEEEEcCC-CCEEEEecCCCeEEEEEECCCCcEE-------------EEeeeecCceeEEeeecCCCceEEeccCceE
Confidence 7999999998 7899999999999999987653211 11111233789999999999999999966 7
Q ss_pred EEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec
Q 011160 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (492)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~ 363 (492)
|..|............ ..... +..-..-....+......+..++- +.+.+++|+|.+
T Consensus 515 iLyW~~~~~~~~ts~k--DvkW~--------------------t~~c~lGF~v~g~s~~t~i~a~~r-s~~~~~lA~gdd 571 (626)
T KOG2106|consen 515 ILYWKPSECKQITSVK--DVKWA--------------------TYTCTLGFEVFGGSDGTDINAVAR-SHCEKLLASGDD 571 (626)
T ss_pred EEEEccccCcccceec--ceeee--------------------eeEEEEEEEEecccCCchHHHhhh-hhhhhhhhcccc
Confidence 9999433322111100 00000 000000000111111112555555 788899999999
Q ss_pred cCeEEEEecCCCe---eeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 364 CGRIFIWKKKGGE---LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 364 dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
.|+|++|...-.+ ....+.+|.+.|++++|..+...|++.+.|..|..|++
T Consensus 572 ~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 572 FGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999975443 33567899999999999999999999889999999987
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-28 Score=190.23 Aligned_cols=259 Identities=21% Similarity=0.343 Sum_probs=204.3
Q ss_pred eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe-eeeEEeecCCCceEEEEEc-CCCCcEEEEEcCCCc
Q 011160 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIE-PGSPHVFYTCGEDGL 174 (492)
Q Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~i~~~-~~~~~~l~~~~~dg~ 174 (492)
.++...|...|..+...- -|++|+|++.|++|+|+.++.... .....+.+|.++|..++|. |.-..+|++++.||.
T Consensus 4 q~idt~H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred eehhhhhhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 344467888888888776 799999999999999999988765 5556699999999999995 443379999999999
Q ss_pred EEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC-CceEEEecCCCeEEEEecccccccCCCCCCCCccccCC
Q 011160 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (492)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (492)
|.||.-+++...+...... |...|++++|.|.+ +-.|++++.||.|.+.+.+... ..+.
T Consensus 82 VIiWke~~g~w~k~~e~~~--------h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g------------~w~t 141 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAA--------HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG------------GWTT 141 (299)
T ss_pred EEEEecCCCchhhhhhhhh--------hcccceeecccccccceEEEEeeCCCcEEEEEEcCCC------------Cccc
Confidence 9999998886544432211 67789999999974 4678999999999999987651 1123
Q ss_pred CCcCCCcccceEEEEEcCC---C-----------CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 254 PNLIGDEQVGITGLAFSDQ---S-----------ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
..+...|...|++++|.|. | +.|++++ |+.|+||....+.
T Consensus 142 ~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------------------------- 196 (299)
T KOG1332|consen 142 SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------------------------- 196 (299)
T ss_pred hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------------------------
Confidence 4456678889999999996 4 4578877 6789999988741
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCC----cEEEEeeccCeEEEEecCCC-e--eeEEEecCCceeEEE
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKGG-E--LIRVIEADRHVVNCI 391 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g----~~l~sg~~dg~i~iwd~~~~-~--~~~~~~~h~~~v~~~ 391 (492)
-...+++.+|... |+.++| .|.- .+||+++.||++.||....- + ....++.....+..+
T Consensus 197 -----------w~~e~~l~~H~dw--VRDVAw-aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 197 -----------WKLERTLEGHKDW--VRDVAW-APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred -----------hhhhhhhhhcchh--hhhhhh-ccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 3445669999987 999998 7864 58999999999999987521 1 112344456779999
Q ss_pred eecCCCCeEEEeeCCCCEEEeccCC
Q 011160 392 EPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 392 ~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
.||+.|+.|+.++.|+.|.+|.-..
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCC
Confidence 9999999999999999999997654
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=4.9e-27 Score=209.15 Aligned_cols=394 Identities=16% Similarity=0.167 Sum_probs=266.9
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCC---CEEEEecCCCe
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGSDDRR 84 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~ 84 (492)
++.-++|.|+.+..|.++.-.++ ++.....+.||...|.+++|...+ -+||++|.|..
T Consensus 157 ~~~~lla~Ggs~~~v~~~s~~~d-------------------~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y 217 (764)
T KOG1063|consen 157 NKTFLLACGGSKFVVDLYSSSAD-------------------SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY 217 (764)
T ss_pred CCcEEEEecCcceEEEEeccCCc-------------------ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE
Confidence 33344777888888888765533 345668899999999999998754 48999999999
Q ss_pred EEEEECCCCc------------------------eee------eeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 85 VILWDWKTER------------------------VKL------SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 85 i~iwd~~~~~------------------------~~~------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
||||.+.-+. .+. .++.||.+.|+++.|+| .+..|++++.|.++.+|.
T Consensus 218 IRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~ 295 (764)
T KOG1063|consen 218 IRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWK 295 (764)
T ss_pred EEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEe
Confidence 9999874322 011 22469999999999999 999999999999999999
Q ss_pred cccCCeee--eEE---eecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 135 ILERGGVE--TKL---LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 135 ~~~~~~~~--~~~---~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
..+...+- ... ..+.........|+|++ +.+++-+..|..++|.......-.. .....| |...|..+
T Consensus 296 pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~-----~~~iSG--H~~~V~dv 367 (764)
T KOG1063|consen 296 PDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQ-----EPVISG--HVDGVKDV 367 (764)
T ss_pred cCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceee-----cccccc--ccccceee
Confidence 87653322 111 22334567889999999 6889999999999998332211111 111123 66689999
Q ss_pred EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEe
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFT 288 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d 288 (492)
+|+|. |.+|++.+.|.+-|+|-.-..+ ..-. ......-|...++|++|-+....+++|.+. -+++|+
T Consensus 368 ~W~ps-GeflLsvs~DQTTRlFa~wg~q-~~wH----------EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 368 DWDPS-GEFLLSVSLDQTTRLFARWGRQ-QEWH----------EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred eecCC-CCEEEEeccccceeeecccccc-ccee----------eecccccccccceeeehccCCceeeecccceeeeeec
Confidence 99998 7899999999999998765222 1111 112233467789999999866667777766 489998
Q ss_pred cCCCC----------CCCCCCCCCCCc--ccc---ccccCC----CCCC------C--CCCC---CCCC--------ccc
Q 011160 289 QDMGL----------GPNPPPSSPVST--RSE---ASEMGS----DHTS------A--ASPS---TANT--------DVR 330 (492)
Q Consensus 289 ~~~~~----------~~~~~~~~~~~~--~~~---~~~~~~----~~~~------~--~~~~---~~~~--------~~~ 330 (492)
....- ........|.+. +.. ...+-+ .+.. . +... ...+ ...
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 65321 000000001000 000 000000 1111 0 0000 0000 112
Q ss_pred cCCceeeccccceeeeeEEeecCCCcEEEEeecc-----CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeC
Q 011160 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 331 ~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
+.+..+.||... |.+++. +|+|+++|+++.. ..|++|+..+...++.+.+|.-.|+.|+||||+++|+++|.
T Consensus 516 PEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 516 PEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred hhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence 344567788876 899998 9999999998754 36999999999999999999999999999999999999999
Q ss_pred CCCEEEeccCCCCCCcccCcccccccccccccccccCchhhHH
Q 011160 406 ESDIKILTPNAADRATLPTNIEQFKPKATRWMHHVLSPEDLMM 448 (492)
Q Consensus 406 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (492)
|.++.+|...........- .. ..-|++-++...++++...
T Consensus 593 DRt~sl~~~~~~~~~e~~f--a~-~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRF--AC-LKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred CceEEeeeeecccchhhhh--cc-ccccceEEEEcccCcccce
Confidence 9999999996554333221 11 1127777888887776654
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.3e-26 Score=197.56 Aligned_cols=311 Identities=16% Similarity=0.249 Sum_probs=233.5
Q ss_pred CCCC-CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCc-cceEEEEEEcCCCCEEEEecCCC
Q 011160 6 NNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 6 ~~~~-~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
|.|. .+++++++ .|.+..|+++.+.+.. ....++.+ +.-|.|++|.++|. ++||..+|
T Consensus 208 FHPtd~nliit~G-k~H~~Fw~~~~~~l~k------------------~~~~fek~ekk~Vl~v~F~engd-viTgDS~G 267 (626)
T KOG2106|consen 208 FHPTDPNLIITCG-KGHLYFWTLRGGSLVK------------------RQGIFEKREKKFVLCVTFLENGD-VITGDSGG 267 (626)
T ss_pred eccCCCcEEEEeC-CceEEEEEccCCceEE------------------EeeccccccceEEEEEEEcCCCC-EEeecCCc
Confidence 4454 45555555 7899999999777662 22334433 36899999999987 78999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
.|.||+..+.+...+.. .|.+.|.+++... +|. |++|+.|..|..|| ..-+......++...++|..++= .++
T Consensus 268 ~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr--~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e--~~~ 340 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH-AHDGGVFSLCMLR--DGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAE--GKG 340 (626)
T ss_pred eEEEEeCCCceEEeEee-ecCCceEEEEEec--Ccc-EeecCccceEEecc-ccccccccccCchhcCCeeEEec--CCC
Confidence 99999998888877775 9999999999997 776 55599999999999 33344444446666677877753 332
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 243 (492)
. |+.|...+.|..=.++++-.+..+- |......++.+|+ ...+++++.|+.+++|+ ..++..+
T Consensus 341 d-i~vGTtrN~iL~Gt~~~~f~~~v~g-----------h~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~wt-- 403 (626)
T KOG2106|consen 341 D-ILVGTTRNFILQGTLENGFTLTVQG-----------HGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEWT-- 403 (626)
T ss_pred c-EEEeeccceEEEeeecCCceEEEEe-----------cccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeEE--
Confidence 3 6788887788777777765554443 5557899999998 78999999999999999 3222111
Q ss_pred CCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 011160 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (492)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (492)
..-..+..++.|+|.| .++.|+ .|...+.|..+.
T Consensus 404 --------------~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~------------------------------ 438 (626)
T KOG2106|consen 404 --------------KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ------------------------------ 438 (626)
T ss_pred --------------EEecCceeEeeccCcc-eEEEeeccceEEEEecccc------------------------------
Confidence 1124578999999999 777777 788999998762
Q ss_pred CCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC-CeeeEEE-ecCCceeEEEeecCCCCeE
Q 011160 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GELIRVI-EADRHVVNCIEPHPHSTVL 400 (492)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~-~~~~~~~-~~h~~~v~~~~~s~~~~~l 400 (492)
..+.-|.....++.+.| +|+|.+||.|+.|+.|+||.+.. |...... +.|.++|+.+.||+|+++|
T Consensus 439 -----------~lv~~~~d~~~ls~v~y-sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 439 -----------DLVTIHTDNEQLSVVRY-SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred -----------eeEEEEecCCceEEEEE-cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence 22233333445889998 99999999999999999999864 4444333 3345789999999999999
Q ss_pred EEeeCCCCEEEeccCCC
Q 011160 401 ASSGIESDIKILTPNAA 417 (492)
Q Consensus 401 ~s~~~dg~i~iw~~~~~ 417 (492)
.+-+.|-.|..|....-
T Consensus 507 ~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSEC 523 (626)
T ss_pred EeccCceEEEEEccccC
Confidence 99999999999954443
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.1e-28 Score=205.28 Aligned_cols=334 Identities=12% Similarity=0.124 Sum_probs=234.9
Q ss_pred EeeccCc-ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCc-cceEEEEEEcCCCCEEEEecC-CCeEEEEE
Q 011160 13 ARTSVDK-ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSD-DRRVILWD 89 (492)
Q Consensus 13 l~t~~~d-g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd 89 (492)
+.+++.| .++.+||+.||... .++++- ...-.++..- .+.+++++.. ...|.+|.
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~---------------------~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~ 67 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSL---------------------LQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWE 67 (476)
T ss_pred EeccCCCCcceeEEecCCCcee---------------------EEecCcccccchhhhhh-chhheeeecccCccccccc
Confidence 3444444 55999999999866 233332 1111111111 2356666543 45789999
Q ss_pred CCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEE
Q 011160 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 169 (492)
+......... .--.++|.+++-+| .|.+|+.|+..|.|++|.+.++..+.. +.+|-..|+|+.|+.|+ .+|++|
T Consensus 68 i~k~~~~~q~-~v~Pg~v~al~s~n--~G~~l~ag~i~g~lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dg-s~iiTg 141 (476)
T KOG0646|consen 68 ILKKDQVVQY-IVLPGPVHALASSN--LGYFLLAGTISGNLYLWELSSGILLNV--LSAHYQSITCLKFSDDG-SHIITG 141 (476)
T ss_pred cCchhhhhhh-cccccceeeeecCC--CceEEEeecccCcEEEEEeccccHHHH--HHhhccceeEEEEeCCC-cEEEec
Confidence 8766554432 34567899999999 999999998999999999999988766 78999999999999999 589999
Q ss_pred cCCCcEEEEeCCCCCccc-eeecCCCCCCCcceeecceEEEEEcCCC-CceEEEecCCCeEEEEecccccccCCCCCCCC
Q 011160 170 GEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 247 (492)
+.||.|.+|.+-.--... .....+.. ..+.|..+|+.+...+-+ ...+++++.|.++++||+..+.++.+..+
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~--~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--- 216 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLH--IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--- 216 (476)
T ss_pred CCCccEEEEEEEeecccccCCCcccee--eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---
Confidence 999999999875321110 00111111 111266688988887631 35899999999999999999887655433
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (492)
...+.+++.+|.++.+.+|+ +|.|.+.++........ ... ....
T Consensus 217 -------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~------~v~----------------~k~~ 261 (476)
T KOG0646|consen 217 -------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA------GVN----------------QKGR 261 (476)
T ss_pred -------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc------ccc----------------cccc
Confidence 46789999999999988888 77888888765321000 000 0000
Q ss_pred CccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEe-eC
Q 011160 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS-GI 405 (492)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~ 405 (492)
.........+.||.+...|+|+++ +-||.+|++|+.||.|.|||+.+.++++++....++|+.+.+.|-.+-.+.+ +.
T Consensus 262 ~~~~t~~~~~~Gh~~~~~ITcLai-s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~ 340 (476)
T KOG0646|consen 262 HEENTQINVLVGHENESAITCLAI-STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHK 340 (476)
T ss_pred ccccceeeeeccccCCcceeEEEE-ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceeccccc
Confidence 011445677889998556999998 9999999999999999999999999999998777899999997765543332 22
Q ss_pred CCCEEEeccC
Q 011160 406 ESDIKILTPN 415 (492)
Q Consensus 406 dg~i~iw~~~ 415 (492)
...+-.|++.
T Consensus 341 ~ps~~~~~lk 350 (476)
T KOG0646|consen 341 QPSLPNPHLK 350 (476)
T ss_pred CccCCchHhh
Confidence 3344455543
No 126
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.2e-28 Score=195.81 Aligned_cols=277 Identities=17% Similarity=0.257 Sum_probs=220.9
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
...+.+.+++.|.+.+||.+++|+++ .++.||.+.|++++|++.+.++++++.|++-.|
T Consensus 158 ~tqpi~gtASADhTA~iWs~Esg~CL---------------------~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 158 STQPICGTASADHTARIWSLESGACL---------------------ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred cCCcceeecccccceeEEeeccccce---------------------eeecccccceeeEEeccccceEEEccCCcchHH
Confidence 34457889999999999999999988 779999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----ceeeeeccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 88 WDW------KT------------------------------E----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 88 wd~------~~------------------------------~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
|.. .. + -++..+ .+|...|.+..|.. .++.+++++.|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~--gg~Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLA--GGQQMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-eccccceEehhhhc--Ccceeeeeecc
Confidence 972 11 0 012233 78999999999998 99999999999
Q ss_pred CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC-ccceeecCCCCCCCcceeecce
Q 011160 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v 206 (492)
.+..+||+.++..+.. +.+|....+.++-+|.. +++++++.|.+.++||++..- .+..|+. |...|
T Consensus 294 RTAnlwDVEtge~v~~--LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQG----------HtdtV 360 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNI--LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQG----------HTDTV 360 (481)
T ss_pred ccceeeeeccCceecc--ccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecc----------cccce
Confidence 9999999999988876 99999999999999998 689999999999999998432 2233332 56689
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIY 285 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~ 285 (492)
+++.|.-+ ..+++|+.|.+|++||+++.+. +...+. ...+++.++.+..+..|+.-.|+ .|+
T Consensus 361 TS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs--------------plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 361 TSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS--------------PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred eEEEEecC--CceeecCCCceEEEeeeccccC--------------cceeee-cCCccceeEeecCCceEEeccCCceEE
Confidence 99999975 5899999999999999998652 111121 25688999999988899988876 699
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC--cEEEEeec
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--EYVVSGSD 363 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g--~~l~sg~~ 363 (492)
+||+....... .+...-++|... |.|++| ..+- .-|++++.
T Consensus 424 lfDlnG~RlaR----------------------------------lPrtsRqgHrRM--V~c~AW-~eehp~cnLftcGF 466 (481)
T KOG0300|consen 424 LFDLNGNRLAR----------------------------------LPRTSRQGHRRM--VTCCAW-LEEHPACNLFTCGF 466 (481)
T ss_pred EEecCCCcccc----------------------------------CCccccccccee--eeeeec-cccCcccccccccc
Confidence 99998743221 122344577765 888888 4332 35778889
Q ss_pred cCeEEEEecCCC
Q 011160 364 CGRIFIWKKKGG 375 (492)
Q Consensus 364 dg~i~iwd~~~~ 375 (492)
|..+.=|++...
T Consensus 467 DR~v~gW~in~p 478 (481)
T KOG0300|consen 467 DRMVAGWKINTP 478 (481)
T ss_pred cceeeeeEeccc
Confidence 999999998653
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=6.5e-28 Score=204.64 Aligned_cols=262 Identities=18% Similarity=0.223 Sum_probs=198.6
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC-CCEEEEecCCCeE
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRV 85 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i 85 (492)
|.+...+||++..+.|.|||...-.-... . ...+.+..+|.||++.=++|+|++. .-.|++++.|++|
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-------~----~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPK-------A----SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCccc-------c----cccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 45566788899999999999984322210 0 0033444678899988889999985 4589999999999
Q ss_pred EEEECCCCce------eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 86 ILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 86 ~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
++||+..... ....+.+|...|..++|+|. +...|++++.|+.+.|||++++.........+|...|+|++|+
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999975432 23445899999999999995 6788899999999999999964333444578899999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
|-+..+||+|+.|++|.+||+|+... +..+. + |...|.++.|+|.....|++++.|+.+.+||+..-..
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e--------~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFE--------G--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceecc--------C--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 99889999999999999999998754 22222 2 6678999999999889999999999999999976543
Q ss_pred cCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCe-eEeec-CCcEEEEecCC
Q 011160 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~-~~~i~~~d~~~ 291 (492)
.+..... ......+..+..+|...|..+.|+|+..+ |++.+ ++.+.||....
T Consensus 352 eq~~eda-~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 352 EQSPEDA-EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccChhhh-ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 3220000 00111123456789999999999998876 45555 55799999874
No 128
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.7e-27 Score=206.47 Aligned_cols=291 Identities=19% Similarity=0.240 Sum_probs=221.3
Q ss_pred eeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
.+...+.||++.|.+|...|.|.+|++|+.||+|+||.+.+|.++..+ ...+.|.|++|+|..+-..||++-... +.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ 467 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLSDLCVLAVAVGEC-VL 467 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCCCceeEEEEecCc-eE
Confidence 455677899999999999999999999999999999999999999888 355689999999944444444443332 33
Q ss_pred EEecccC---------------------------------Cee--eeEEeecCCCceEEEEEcCCCCcEEEEEcCC---C
Q 011160 132 HAQILER---------------------------------GGV--ETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---G 173 (492)
Q Consensus 132 iw~~~~~---------------------------------~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---g 173 (492)
|.+..-+ ... .....-.|...|..|.|+..|. +|++...+ .
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~ 546 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNK 546 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcc
Confidence 3332111 000 0112345788999999999995 67766543 4
Q ss_pred cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCC
Q 011160 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (492)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (492)
.|.|.++........|.. ..+.+.++.|+|. ..+|++++ ...|+|||+..+.+...+
T Consensus 547 ~VliHQLSK~~sQ~PF~k----------skG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL----------- 603 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRK----------SKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKL----------- 603 (733)
T ss_pred eEEEEecccccccCchhh----------cCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHH-----------
Confidence 688999887766554432 4457899999998 45555554 468999999887654332
Q ss_pred CCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccC
Q 011160 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (492)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (492)
......|..++.+|.|.-|+.++ ++.+..||++-. .+.
T Consensus 604 ----~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls-------------------------------------skP 642 (733)
T KOG0650|consen 604 ----LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-------------------------------------SKP 642 (733)
T ss_pred ----hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-------------------------------------cch
Confidence 12356899999999998888887 668999999864 456
Q ss_pred CceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC-------C--CeeeEEEecCCce----eEEEeecCCCCe
Q 011160 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-------G--GELIRVIEADRHV----VNCIEPHPHSTV 399 (492)
Q Consensus 333 ~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~-------~--~~~~~~~~~h~~~----v~~~~~s~~~~~ 399 (492)
.+++.-|... +++++| ++.-.++|+|+.||++.|+.-. + --++..+++|... |..+.|+|...+
T Consensus 643 yk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 643 YKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred hHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 7788888887 899998 9999999999999999998531 1 1345778888765 899999999999
Q ss_pred EEEeeCCCCEEEec
Q 011160 400 LASSGIESDIKILT 413 (492)
Q Consensus 400 l~s~~~dg~i~iw~ 413 (492)
|+++|.||+|++|.
T Consensus 720 LfsAGAd~tirlfT 733 (733)
T KOG0650|consen 720 LFSAGADGTIRLFT 733 (733)
T ss_pred EEecCCCceEEeeC
Confidence 99999999999983
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.5e-26 Score=203.39 Aligned_cols=378 Identities=15% Similarity=0.159 Sum_probs=260.9
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
.++. ++.+|.+.+-+|.|.-||+.+++.. ..+....+.|++++.+|.+..++.|+.||
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~---------------------~~~d~~gg~IWsiai~p~~~~l~IgcddG 132 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQK---------------------YNIDSNGGAIWSIAINPENTILAIGCDDG 132 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCcee---------------------EEecCCCcceeEEEeCCccceEEeecCCc
Confidence 3454 5677888888999999999988766 66777889999999999999999999999
Q ss_pred eEEEEECCCCceeeee-ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEE-----eec-CCCceEEE
Q 011160 84 RVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL-----LGK-HQGRAHKL 156 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-----~~~-~~~~v~~i 156 (492)
.+..++...+...... +...++.|.++.|+| ++..|++|+.||.|++||...+....... +.. ...-|+++
T Consensus 133 vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 133 VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV 210 (691)
T ss_pred eEEEEecCCceEEEEeecccccceEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE
Confidence 8888887777654332 344568999999999 99999999999999999999887765211 111 33457888
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
.|-.++ .|++|...|+|.+||...+..++.+.+ +...|.+++..++ +..+++++.|+.|..|...+.
T Consensus 211 ~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~----------h~adVl~Lav~~~-~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 211 LFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSC----------HDADVLALAVADN-EDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred EEeecC--cEEEecCCceEEEEcccCcchhhhhhh----------hhcceeEEEEcCC-CCeEEEccCCCceEEEEecCC
Confidence 888776 689999999999999999999988877 5668999999987 678999999999888876655
Q ss_pred cccC-----CC-------------------------------CC------------------------------------
Q 011160 237 KWDG-----ST-------------------------------DF------------------------------------ 244 (492)
Q Consensus 237 ~~~~-----~~-------------------------------~~------------------------------------ 244 (492)
+... .. .+
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~l 357 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDL 357 (691)
T ss_pred ccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccc
Confidence 3200 00 00
Q ss_pred ---CCC--c---cccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCC--CCCCCC-CccccccccC
Q 011160 245 ---GQP--A---DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP--PPSSPV-STRSEASEMG 313 (492)
Q Consensus 245 ---~~~--~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~--~~~~~~-~~~~~~~~~~ 313 (492)
+.. . .......+.......|.+.+.+|+|++|+.++-...++|.+........ ....+. ........+.
T Consensus 358 wrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ft 437 (691)
T KOG2048|consen 358 WRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFT 437 (691)
T ss_pred eeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEE
Confidence 000 0 0000000111234568899999999999999877778887765321111 111111 0011111122
Q ss_pred CCCCCCCCCCCC---------CCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecC
Q 011160 314 SDHTSAASPSTA---------NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (492)
Q Consensus 314 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 384 (492)
-+...+...+.+ .+...+.+..+........|..+.. +|+|+|||+.+..|.|.+|++++.+.......-
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~-SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVV-SSDGNYIAAISTRGQIFVYNLETLESHLLKVRL 516 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEE-cCCCCEEEEEeccceEEEEEcccceeecchhcc
Confidence 222222211100 1111222222222223334778887 999999999999999999999988765444344
Q ss_pred CceeEEEeecC-CCCeEEEeeCCCCEEEeccCCCCC
Q 011160 385 RHVVNCIEPHP-HSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 385 ~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
...|++++++| +.+.|+.+..++.+.-+|++..+.
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l 552 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL 552 (691)
T ss_pred CcceeeeeccccccCcEEEEecCCeEEEEecchhhh
Confidence 47799999995 556788888899999999965543
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.1e-27 Score=200.60 Aligned_cols=291 Identities=14% Similarity=0.241 Sum_probs=219.7
Q ss_pred CCCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCC-EEEEe
Q 011160 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISG 79 (492)
Q Consensus 1 ~~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~ 79 (492)
|-++.|.|..++|++++-||+++||.++ |+.-. .++.+.--..+|.+++|.|+|. .++++
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~------------------~lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNP------------------KLQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEec-CccCh------------------hheeeeeccCccceeeecCCCceEEEec
Confidence 4578899999999999999999999998 65442 2244444578999999999998 89999
Q ss_pred cCCCeEEEEECCCCceeeee-ccCcC-cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEE
Q 011160 80 SDDRRVILWDWKTERVKLSF-HSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~ 157 (492)
+....+..||+.+.+....- +.++. ..+.....+| ++++|+..+..|.|.+....+++.+....+ .+.|..++
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh--d~~fia~~G~~G~I~lLhakT~eli~s~Ki---eG~v~~~~ 351 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH--DSNFIAIAGNNGHIHLLHAKTKELITSFKI---EGVVSDFT 351 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecC--CCCeEEEcccCceEEeehhhhhhhhheeee---ccEEeeEE
Confidence 99999999999887653221 12333 3566778889 999999999999999999988887665333 47899999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
|+.++ ..|++++.+|.|.+||++...++..+.... ...-++++.+++ +.+||+|+..|.|.|||..+-.
T Consensus 352 fsSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G---------~v~gts~~~S~n-g~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 352 FSSDS-KELLASGGTGEVYVWNLRQNSCLHRFVDDG---------SVHGTSLCISLN-GSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EecCC-cEEEEEcCCceEEEEecCCcceEEEEeecC---------ccceeeeeecCC-CceEEeccCcceEEEeccchhh
Confidence 99999 577788888999999999998888776321 112356777786 7899999999999999976543
Q ss_pred ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC---CcEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
.... | .|......-...|++++|+|++++||.++. +.+++--+........++
T Consensus 421 ~s~~-----P----kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP--------------- 476 (514)
T KOG2055|consen 421 ASTN-----P----KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP--------------- 476 (514)
T ss_pred ccCC-----C----CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC---------------
Confidence 2111 1 122223334568999999999999999884 368888776543222211
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
...+--+ .|+|++| ||.|.+||.|...|.+.+|.+.
T Consensus 477 -----------------~~n~~vg-----~vtc~aF-SP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 -----------------TSNTKVG-----HVTCMAF-SPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -----------------CCCCccc-----ceEEEEe-cCCCceEEeecCCCceeeEeec
Confidence 0011111 2899999 9999999999999999999874
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=8.5e-27 Score=188.16 Aligned_cols=274 Identities=11% Similarity=0.100 Sum_probs=203.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
++.|+|.+..|++++.||++++|+.....+. ..+ .|..++.+++|.+ ...+++|+.|
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~---------------------~~~-~~~~plL~c~F~d-~~~~~~G~~d 74 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLK---------------------LKF-KHGAPLLDCAFAD-ESTIVTGGLD 74 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhh---------------------hhe-ecCCceeeeeccC-CceEEEeccC
Confidence 5678899999999999999999999865444 223 4899999999987 4568999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
|.|+.+|+.++.... + ..|..+|.++.+++ ....+++|+.|++|++||.+....... +. ....|.++....
T Consensus 75 g~vr~~Dln~~~~~~-i-gth~~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~~~~~~~--~d-~~kkVy~~~v~g-- 145 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQ-I-GTHDEGIRCIEYSY--EVGCVISGSWDKTIKFWDPRNKVVVGT--FD-QGKKVYCMDVSG-- 145 (323)
T ss_pred ceEEEEEecCCccee-e-ccCCCceEEEEeec--cCCeEEEcccCccEEEEeccccccccc--cc-cCceEEEEeccC--
Confidence 999999999888633 3 57999999999998 888999999999999999987444332 22 334788887754
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
+.|++|+.+..+.+||+++........... -.-.+.++++-|. +.-+++++-+|.|.+=.+......+..
T Consensus 146 -~~LvVg~~~r~v~iyDLRn~~~~~q~reS~--------lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 146 -NRLVVGTSDRKVLIYDLRNLDEPFQRRESS--------LKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred -CEEEEeecCceEEEEEcccccchhhhcccc--------ceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhh
Confidence 468999999999999999876554322111 3446899999995 667888899999988666554322221
Q ss_pred CCCCCccccCCCCcCCC--cccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGD--EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
.+ ...|....... --.+|++++|+|-...|++|+ ||.|.+||+.+.
T Consensus 216 ky----aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r--------------------------- 264 (323)
T KOG1036|consen 216 KY----AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR--------------------------- 264 (323)
T ss_pred ce----eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---------------------------
Confidence 11 11122211111 235799999999888888887 778999999874
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~ 363 (492)
+.+..+...... |.+++| +.+|..||+++.
T Consensus 265 -----------Krl~q~~~~~~S--I~slsf-s~dG~~LAia~s 294 (323)
T KOG1036|consen 265 -----------KRLKQLAKYETS--ISSLSF-SMDGSLLAIASS 294 (323)
T ss_pred -----------hhhhhccCCCCc--eEEEEe-ccCCCeEEEEec
Confidence 334444443333 889998 999999999873
No 132
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=219.51 Aligned_cols=244 Identities=20% Similarity=0.293 Sum_probs=211.5
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 139 (492)
|...+.+..|. ..++++++.+++|++|+..++..+..-+.+|.+.|.++++.. .+.+|++|+.|.++++||..++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCCCc
Confidence 56788888888 568999999999999999999988884489999999999976 68999999999999999999999
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (492)
+... +.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.. |..+|+++..+ +.++
T Consensus 283 C~~~--l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~----------h~~~V~~v~~~---~~~l 344 (537)
T KOG0274|consen 283 CTHS--LQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRG----------HTGPVNCVQLD---EPLL 344 (537)
T ss_pred EEEE--ecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEecc----------ccccEEEEEec---CCEE
Confidence 8877 889999999998876 4678899999999999999999888764 56689999997 4599
Q ss_pred EEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 299 (492)
++|+.|++|++||+.++
T Consensus 345 vsgs~d~~v~VW~~~~~--------------------------------------------------------------- 361 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTG--------------------------------------------------------------- 361 (537)
T ss_pred EEEecCceEEEEEhhhc---------------------------------------------------------------
Confidence 99999999999999754
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC-eee
Q 011160 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELI 378 (492)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~-~~~ 378 (492)
+++..+.+|... |.++.+ .+. .++++|+.|++|++||+.+. +++
T Consensus 362 -------------------------------~cl~sl~gH~~~--V~sl~~-~~~-~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 362 -------------------------------KCLKSLSGHTGR--VYSLIV-DSE-NRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred -------------------------------eeeeeecCCcce--EEEEEe-cCc-ceEEeeeeccceEeecCCchhhhh
Confidence 345667778776 888876 544 89999999999999999999 999
Q ss_pred EEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcccCc
Q 011160 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN 425 (492)
Q Consensus 379 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 425 (492)
..+.+|.+-|..+.+ .+++|++++.|++|++||.+++++......
T Consensus 407 ~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred hhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 999999998866655 678999999999999999999887665433
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.3e-27 Score=204.96 Aligned_cols=275 Identities=17% Similarity=0.294 Sum_probs=215.0
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeE
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (492)
.++..+++.||+ .|-|+|||+....-. ..+..|.++ .-...|.++.+.|||+.|++|+.-.++
T Consensus 427 IS~~trhVyTgG-kgcVKVWdis~pg~k------------~PvsqLdcl----~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 427 ISNPTRHVYTGG-KGCVKVWDISQPGNK------------SPVSQLDCL----NRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred ecCCcceeEecC-CCeEEEeeccCCCCC------------Ccccccccc----CcccceeeeEecCCCceEEecccccee
Confidence 456678899998 578999999732110 011111111 135689999999999999999999999
Q ss_pred EEEECCCCceeeee-ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCc
Q 011160 86 ILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 86 ~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
.|||+......... +....-..++++.+| |.+..++++.||.|.|||+.+...+.. +.+|++.+.||.++++| .
T Consensus 490 siWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~Vrq--fqGhtDGascIdis~dG-t 564 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISKDG-T 564 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeec--ccCCCCCceeEEecCCC-c
Confidence 99999876543222 123334678899999 999999999999999999988766655 99999999999999999 5
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
.|.+|+-|.+|+.||++++..+.... ....|.++.++|. +.+++.|-.++.+.+......+
T Consensus 565 klWTGGlDntvRcWDlregrqlqqhd-----------F~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~------- 625 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQHD-----------FSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPE------- 625 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhhh-----------hhhhheecccCCC-ccceeeecccCcEEEEecCCcc-------
Confidence 78999999999999999998776655 4568999999998 7899999999999998876543
Q ss_pred CCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
......|...|.++.|.+.|+++++.+ |+-+-.|....+..
T Consensus 626 ---------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas----------------------------- 667 (705)
T KOG0639|consen 626 ---------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS----------------------------- 667 (705)
T ss_pred ---------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc-----------------------------
Confidence 223445788999999999999999988 55688998765421
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
.|+.... ..|.++.. |.|.+||++|+.|....||.+
T Consensus 668 -----------iFqskE~-SsVlsCDI-S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 -----------IFQSKES-SSVLSCDI-SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -----------eeecccc-Ccceeeee-ccCceEEEecCCCcceEEEEE
Confidence 1222111 13888888 999999999999998888865
No 134
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=191.79 Aligned_cols=311 Identities=19% Similarity=0.236 Sum_probs=228.3
Q ss_pred eeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCC------CceeeeeccCcCcceEEEEecCCCCCceEEeecC
Q 011160 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
+.+.+.+|.+.|++|.|+.++++|++|+.|..+++|+++. .+++...-..|...|.|++|.. ...++++|+.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~ 125 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGER 125 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCC
Confidence 3456778999999999999999999999999999999853 3444444345778999999998 8899999999
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
+++|.+-|+.+.+.+....-....+.|+.+..+|.. +.|++.+.++.|.+||.+.......+.+... .....
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-------~~~~F 197 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-------SGKNF 197 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecC-------CCccc
Confidence 999999999988777653333344599999999986 6899999999999999987763222222211 33457
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIY 285 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~ 285 (492)
..+.|+|..+.+|++.+..+-+.+||.+..... +..+....-+......-.++.|+|+|..+.+.-.+ .-.
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~--------~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARP--------VYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccch--------HHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 889999998899999999999999999875421 00000000111112344678899999888777655 466
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
+||+-...... .+.-....|..+..++.+++| - +..-+++|+++-
T Consensus 270 ~~D~~S~R~~V---------------------------------~k~D~N~~GY~N~~T~KS~~F-~-~D~~v~tGSD~~ 314 (609)
T KOG4227|consen 270 YFDFISQRCFV---------------------------------LKSDHNPNGYCNIKTIKSMTF-I-DDYTVATGSDHW 314 (609)
T ss_pred Eeeeeccccee---------------------------------EeccCCCCcceeeeeeeeeee-e-cceeeeccCccc
Confidence 77776532110 000011123344556888888 3 345699999999
Q ss_pred eEEEEecCC----------C-------------eeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 366 RIFIWKKKG----------G-------------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 366 ~i~iwd~~~----------~-------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
.|++|.+.. | +.+..+++|...++.+.|+|...+|++.|-.+.++||..-.
T Consensus 315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 999999742 1 12356889999999999999999999999999999998754
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.2e-25 Score=199.97 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=196.0
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceE-EeecCCCcEEEEecccCCeeeeEEeecCCC
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQG 151 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 151 (492)
+.++++++.|+.|++||+.+++.+..+ ..+. .+.+++|+| ++..+ ++++.++.|++||..+++.... +..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~~-~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVGQ-RPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGT--LPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECCC-CCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEe--ccCCC-
Confidence 357889999999999999998887776 4443 467899999 88876 5667889999999988765443 33333
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC-eEEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRL 230 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~i 230 (492)
.+..++|+|++..++++++.++.|++||+++.+.+..+.. ...+..++|+|+ +.++++++.++ .+.+
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~d-g~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------GVEPEGMAVSPD-GKIVVNTSETTNMAHF 141 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------CCCcceEEECCC-CCEEEEEecCCCeEEE
Confidence 3567899999964545566789999999998776555431 123578999998 67787777664 5677
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
||..+++..... . ......+++|+|++++|++++ ++.|++||+.++.....+...
T Consensus 142 ~d~~~~~~~~~~--------------~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~------- 198 (300)
T TIGR03866 142 IDTKTYEIVDNV--------------L--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE------- 198 (300)
T ss_pred EeCCCCeEEEEE--------------E--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-------
Confidence 898765432110 0 112356789999999875543 668999999875322211100
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE-eeccCeEEEEecCCCeeeEEEecCCce
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHV 387 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~ 387 (492)
....+........+.| +|++++++. .+.++.|.+||+.+++.+..+. +...
T Consensus 199 --------------------------~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~ 250 (300)
T TIGR03866 199 --------------------------IPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR 250 (300)
T ss_pred --------------------------ccccccccCCccceEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence 0000011111345777 999998654 4556789999999988876654 3456
Q ss_pred eEEEeecCCCCeEEEe-eCCCCEEEeccCCCCCC
Q 011160 388 VNCIEPHPHSTVLASS-GIESDIKILTPNAADRA 420 (492)
Q Consensus 388 v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~ 420 (492)
+.+++|+|++++|+++ +.++.|++||+.+++..
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 8999999999998876 56899999999998754
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=5.3e-26 Score=193.01 Aligned_cols=307 Identities=18% Similarity=0.228 Sum_probs=219.8
Q ss_pred eeeEeecCccceEEEEEEcCCC--CEEEEecCCCeEEEEECCCCce---eeeeccCcCcceEEEEecCCCCCceEEeecC
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
......+-|.++|++++|+|.. +++|+|+.-|+|-+||+.+.+. -..+...|..+|.+|.|+|. +...+++.+.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ssSy 255 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-NTSQIYSSSY 255 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-Chhheeeecc
Confidence 3445566789999999999964 6899999999999999953222 12233789999999999994 6788999999
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecc
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVN 205 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 205 (492)
||+|++-|+..........+......+.++.|+.+.+ .++.+..=|...+||++++.. ...+.. |...
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~l----------h~kK 324 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRL----------HKKK 324 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhh----------hhcc
Confidence 9999999997754333222322445667888888875 456666667999999998876 333332 4457
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcE
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (492)
|..++++|....+|++++.|++.+|||+|+...... +......|...|.+..|||.+-.|++.+ |+.|
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~I 393 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEI 393 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cceecccccceeeeeEEcCCCCceEeeccCCce
Confidence 999999999899999999999999999998653221 1122335788999999999865566655 7799
Q ss_pred EEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee-c--cccceeeeeEEeecCCCcEEEEe
Q 011160 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-G--HRNCVTVKGVNFFGPKCEYVVSG 361 (492)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~v~~~~~~s~~g~~l~sg 361 (492)
+|||..--... ..+..++. . +....+.....| .|+..++++|
T Consensus 394 Rv~dss~~sa~----------------------------------~~p~~~I~Hn~~t~RwlT~fKA~W-~P~~~li~vg 438 (498)
T KOG4328|consen 394 RVFDSSCISAK----------------------------------DEPLGTIPHNNRTGRWLTPFKAAW-DPDYNLIVVG 438 (498)
T ss_pred EEeeccccccc----------------------------------CCccceeeccCcccccccchhhee-CCCccEEEEe
Confidence 99998410000 11111111 1 111223455666 9999999999
Q ss_pred eccCeEEEEecCCCeeeEEEecCCc-eeEE-EeecCCCCeEEEe-eCCCCEEEeccCC
Q 011160 362 SDCGRIFIWKKKGGELIRVIEADRH-VVNC-IEPHPHSTVLASS-GIESDIKILTPNA 416 (492)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~-~~~s~~~~~l~s~-~~dg~i~iw~~~~ 416 (492)
..-..|-|+|-..++.+..+..... .|.+ ..|+|-+..+++| +..|.|+||.-+.
T Consensus 439 ~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 439 RYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 9999999999999998888755433 4444 4799998855555 4578888886543
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=181.23 Aligned_cols=295 Identities=12% Similarity=0.138 Sum_probs=199.6
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEE-EecC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI-SGSD 81 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~ 81 (492)
++.|+.+|+.|||++.|++|+||++.........+ +.+.+. -+.-+.++|+||-+-++ +.-.
T Consensus 91 ~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~---------------~R~nve--~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 91 DVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRC---------------IRQNVE--YDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred eeEEcCCCceeEEEeCCceEEEEecchhhhhhhhH---------------hhcccc--CCCceEEEECCCcceEEEEEcc
Confidence 57899999999999999999999998543321100 001111 12346779999876544 4445
Q ss_pred CCeEEEEECCCC---cee--------eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC
Q 011160 82 DRRVILWDWKTE---RVK--------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 82 d~~i~iwd~~~~---~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
..++++|.+... ... ..|..-|.-.+..+-... ++.+|++++.|..|.+|++. ++.... +....
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq~L~~--idtnq 228 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQLLQS--IDTNQ 228 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cceeee--ecccc
Confidence 568999986432 211 123344666777777776 88999999999999999997 554443 44444
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCC---CCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCe
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (492)
..-+..+.+|+| +++++++...-|++|.+- .|......+. ....+ |...|..++|+++ ...+++.+.||+
T Consensus 229 ~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rv---f~LkG--H~saV~~~aFsn~-S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 229 SSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV---FSLKG--HQSAVLAAAFSNS-STRAVTVSKDGK 301 (420)
T ss_pred ccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhh---heecc--chhheeeeeeCCC-cceeEEEecCCc
Confidence 556678999999 688999998999999863 2222211111 11233 7778999999998 789999999999
Q ss_pred EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccc
Q 011160 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (492)
Q Consensus 228 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (492)
+++||..-.-....... ..+.. + .......+....+.++|+|+.|+......+++|..++++..
T Consensus 302 wriwdtdVrY~~~qDpk--~Lk~g-~-~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~------------ 365 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPK--ILKEG-S-APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDY------------ 365 (420)
T ss_pred EEEeeccceEecCCCch--HhhcC-C-cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccc------------
Confidence 99999864322111000 00000 0 11111223344899999999999999999999998875322
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
...-..|... |.+++| +++|+++++++ |..++++.
T Consensus 366 -------------------------~~~e~~h~~~--Is~is~-~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 366 -------------------------PELEDIHSTT--ISSISY-SSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -------------------------hhHHHhhcCc--eeeEEe-cCCCcEEeeec-ceeeeeec
Confidence 2222345554 899999 99999999987 67787776
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=209.70 Aligned_cols=291 Identities=16% Similarity=0.223 Sum_probs=222.4
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce----eeeeccCc---CcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGH---NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
+...+|..+++-..|+.++. ..++||.+..... ...+ ... ...+..+.|... +.++||+++..|.|.+||
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~-k~kqn~~~S~~DVkW~~~-~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRF-KTKQNKFYSAADVKWGQL-YSNLIATCSTNGVISVWD 116 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeec-ccccceeeehhhcccccc-hhhhheeecCCCcEEEEe
Confidence 45667788898888888886 4688887764322 1111 111 124556788753 678999999999999999
Q ss_pred cccC-CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 135 ILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 135 ~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
+... .......+..|...++++.|++..+++|++|+.||.|++||++..+....+.. ....|..++|+|
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----------nSESiRDV~fsp 186 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----------NSESIRDVKFSP 186 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----------cchhhhceeecc
Confidence 9762 11222347889999999999999999999999999999999999988887765 444799999999
Q ss_pred CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
..++.|+++...|.+++||+|.... .......|.++|.++.|+|++.+||+|+ |+.|+||+..+.
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r--------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDR--------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchh--------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 8889999999999999999998652 2234556899999999999999999999 668999999864
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcE-EEEee--ccCeEEE
Q 011160 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY-VVSGS--DCGRIFI 369 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~-l~sg~--~dg~i~i 369 (492)
+. ....++..- ..+.++.| -|...+ ||+++ .|-.|+|
T Consensus 253 ~~------------------------------------~~~~tInTi---apv~rVkW-RP~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 253 RA------------------------------------KPKHTINTI---APVGRVKW-RPARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred Cc------------------------------------cceeEEeec---ceeeeeee-ccCccchhhhhhccccceEEE
Confidence 21 112222211 13889998 887664 55554 4778999
Q ss_pred EecCCC-eeeEEEecCCceeEEEeecC-CCCeEEEeeCCCCEEEeccCCCCC
Q 011160 370 WKKKGG-ELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 370 wd~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
||+... -+..++..|...++.++|-. |...|.+++.||+|..-.++....
T Consensus 293 WDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 293 WDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred EeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 999654 34578889999999999965 455789999999998877766543
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.9e-27 Score=210.84 Aligned_cols=288 Identities=13% Similarity=0.204 Sum_probs=212.3
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC-CCCEEEEecCCCe
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRR 84 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~ 84 (492)
-+++...++.++. ..++|+........ .++..+++..+ .-.-.+..+.|.. +.++|||++..|.
T Consensus 47 ~nr~~~qiv~AGr-s~lklyai~~~~~~-----------~~~~~~~k~kq---n~~~S~~DVkW~~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 47 VNRDINQIVVAGR-SLLKLYAINPNDFS-----------EKCNHRFKTKQ---NKFYSAADVKWGQLYSNLIATCSTNGV 111 (839)
T ss_pred ecCCcceeEEecc-cceeeEeeCcccCC-----------cceeeeccccc---ceeeehhhcccccchhhhheeecCCCc
Confidence 3455566666664 36777776633322 11222211111 1123455677864 5689999999999
Q ss_pred EEEEECCC--CceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 85 VILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 85 i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
|.+||+.. .+.....+..|...++++.|++. ...+|++|+.||.|++||++....... +.+....|..+.|+|..
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~~S~~t--~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSKKSKST--FRSNSESIRDVKFSPGY 188 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccC-CccEEEecCCCceEEEEeeeccccccc--ccccchhhhceeeccCC
Confidence 99999987 22222334889999999999984 678999999999999999998877665 67788999999999988
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCcc-ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
++.|+++...|.+.+||++....- ..+.. |.++|.|+.|+|+ +.+||+|+.|+.|+|||....+....
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A----------H~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTA----------HNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhc----------ccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccce
Confidence 889999999999999999977543 22322 7789999999995 89999999999999999986542211
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec--CC-cEEEEecCCCCCCCCCCCCCCCccccccccCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN--DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~--~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
.. -....++.++.|-|... .|++++ .+ .|+|||++..
T Consensus 258 -------------~t-InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------------- 298 (839)
T KOG0269|consen 258 -------------HT-INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------------- 298 (839)
T ss_pred -------------eE-EeecceeeeeeeccCccchhhhhhccccceEEEEeeccc-------------------------
Confidence 11 11246899999999865 567666 33 6999999864
Q ss_pred CCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC
Q 011160 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~ 375 (492)
..+..++..|... ++.++|-+.|-..+.+++.||+|..-..+++
T Consensus 299 ------------YIP~~t~~eH~~~--vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 299 ------------YIPYATFLEHTDS--VTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ------------cccceeeeccCcc--ccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 3456788889887 8889984445678889999998876665554
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=191.80 Aligned_cols=280 Identities=15% Similarity=0.209 Sum_probs=210.3
Q ss_pred EecCC-CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC-CCcEEEEecccCCeeeeEEeecCCCceEE
Q 011160 78 SGSDD-RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHK 155 (492)
Q Consensus 78 s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~ 155 (492)
+++.| .++.+||+.+|....++..+....-.++... .+.+++++.. ...|.+|.+........ ..--.++|.+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q--~~v~Pg~v~a 86 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQ--YIVLPGPVHA 86 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhh--hcccccceee
Confidence 34444 4599999999999888832212222233322 4566666653 45789999866544331 2234578999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 156 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
++-+|.| ++++.|+..|.|++|.+.+|..+..+.. |-..|+++.|+-+ +.+|++|+.||.|.+|.+..
T Consensus 87 l~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~a----------HYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 87 LASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSA----------HYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred eecCCCc-eEEEeecccCcEEEEEeccccHHHHHHh----------hccceeEEEEeCC-CcEEEecCCCccEEEEEEEe
Confidence 9999999 6778887999999999999999888754 5668999999998 78999999999999999865
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC--CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCcccccccc
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (492)
.--.. +.....+...+..|.-.|+.+...+.| .+|++++ |.++++||+..+.
T Consensus 155 lv~a~------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~------------------- 209 (476)
T KOG0646|consen 155 LVSAD------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV------------------- 209 (476)
T ss_pred ecccc------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-------------------
Confidence 32111 111223556777889999999988764 5777877 6689999998852
Q ss_pred CCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC----------------Ce
Q 011160 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG----------------GE 376 (492)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~----------------~~ 376 (492)
.+.++.-.. .+.+++. +|-++.+++|+.+|.|.+.++.. +.
T Consensus 210 -------------------LLlti~fp~---si~av~l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 210 -------------------LLLTITFPS---SIKAVAL-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred -------------------eeEEEecCC---cceeEEE-cccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 223332222 3788888 99999999999999999988743 23
Q ss_pred eeEEEecCCc--eeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcc
Q 011160 377 LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (492)
Q Consensus 377 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 422 (492)
.+..+.+|.+ .|++++.+-||.+|++|+.||+|+|||+.+.++.+.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 4567789988 899999999999999999999999999999876554
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=9e-26 Score=199.34 Aligned_cols=297 Identities=18% Similarity=0.203 Sum_probs=207.2
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+....|+.+.+||.|.++|...-+.... -..+.....|...|..+.|.|....|++++.|.++++
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~e---------------e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLE---------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchh---------------hhhhcccccccceeEeeccCCCceeEEEccCCceeee
Confidence 4455699999999999999874332200 0112445689999999999997788999999999999
Q ss_pred EECCCCceeee-eccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee-------------------------
Q 011160 88 WDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV------------------------- 141 (492)
Q Consensus 88 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~------------------------- 141 (492)
||+++.+.... +..+|...|.+++|.|. +...|++|+.||.|.|||++-....
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 99998887655 23699999999999994 6778999999999999999743310
Q ss_pred eeEEeecCCCceEE---EEEcCCCCcEEEEEcC-CCcEEEEeCCCCCccceeecCCCCCCCcc-eeecceEEEEEcCCCC
Q 011160 142 ETKLLGKHQGRAHK---LAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNA 216 (492)
Q Consensus 142 ~~~~~~~~~~~v~~---i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~ 216 (492)
.......+...|.+ +.+..|. ..|++++. |+.|++||++..................+ .....+.++..... |
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-G 283 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-G 283 (720)
T ss_pred cccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC-C
Confidence 00011223344444 4445555 46788877 99999999998876554433322222221 12446778888877 5
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCc--ccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
.+|++.+.|+.|++|++....... .....++ ......-..+|++.+|++++ +...++|.+...
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP-------------~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~- 349 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISP-------------VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP- 349 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCc-------------hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc-
Confidence 566666679999999998765321 1111111 11222335689999999999 668999999875
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC-CcEEEEeeccCeEEEEec
Q 011160 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~-g~~l~sg~~dg~i~iwd~ 372 (492)
......+.||... |++++| .|. -.-++++++|..++||++
T Consensus 350 ------------------------------------e~~~~~l~Ght~e--Vt~V~w-~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 350 ------------------------------------EAPPALLLGHTRE--VTTVRW-LPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ------------------------------------cCChhhhhCcceE--EEEEee-ccccCCCceeeccCcceEEEec
Confidence 3445667788776 788888 443 334666699999999998
Q ss_pred CCC
Q 011160 373 KGG 375 (492)
Q Consensus 373 ~~~ 375 (492)
..+
T Consensus 391 ~~~ 393 (720)
T KOG0321|consen 391 SNG 393 (720)
T ss_pred cCc
Confidence 654
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.4e-26 Score=182.84 Aligned_cols=287 Identities=16% Similarity=0.240 Sum_probs=210.3
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|++.|.+||+|+.||.|-|||+.|.... +.+.+|..+|++++||+||+.|+|+|.|
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---------------------r~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---------------------RMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccccchh---------------------hhhhccccceeEEEecCCCCEeeeecCC
Confidence 3568999999999999999999999977655 7789999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecC-----CCceEEEE
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-----QGRAHKLA 157 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-----~~~v~~i~ 157 (492)
..|.+||+..|.++.++ ...++|+.+.|+|.. .+..++.-.+..-.+.++..+.... +... .....+..
T Consensus 87 ~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k-~n~~va~~~~~sp~vi~~s~~~h~~---Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRK-RNKCVATIMEESPVVIDFSDPKHSV---LPKDDDGDLNSSASHGV 160 (405)
T ss_pred ceeEEEeccCCCceeEE--EccCccceeeecccc-CCeEEEEEecCCcEEEEecCCceee---ccCCCcccccccccccc
Confidence 99999999999998887 467899999999943 3333333334444555554422211 2111 11223346
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
|.+.| +++++|...|.+.+++..+.+++..++... ...|..+.++.. +..|+.-+.|+.||.|+++.-.
T Consensus 161 fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits---------~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 161 FDRRG-KYIITGTSKGKLLVYDAETLECVASFRITS---------VQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred ccCCC-CEEEEecCcceEEEEecchheeeeeeeech---------heeeeEEEEecc-CcEEEEecCCceEEEEehhhhc
Confidence 88888 689999999999999999999888776532 246888999887 7899999999999999987432
Q ss_pred ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC--cEEEEecCCCCCCCCCCCCCCCccccccccCCC
Q 011160 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (492)
..+......+. ...+.+. ....-.+++|+.+|.|+++++.. .+++|....|
T Consensus 230 ~~~r~~e~e~~--~K~qDvV--Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G----------------------- 282 (405)
T KOG1273|consen 230 DEGRDGEVEPE--HKLQDVV--NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG----------------------- 282 (405)
T ss_pred ccCccCCcChh--HHHHHHH--hhhhhhheeecCCccEEEeccccceeEEEEecCCc-----------------------
Confidence 11110000000 0000000 12345678999999999998844 5999998774
Q ss_pred CCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
..++.+.|..+. ....+.| +|-...+++- ..|.|+||..
T Consensus 283 ---------------sLVKILhG~kgE-~l~DV~w-hp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 283 ---------------SLVKILHGTKGE-ELLDVNW-HPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ---------------ceeeeecCCchh-heeeccc-ccceeeeeec-cCCceEEEEe
Confidence 567777777643 2567888 8887788877 6899999986
No 143
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=205.97 Aligned_cols=241 Identities=17% Similarity=0.258 Sum_probs=204.4
Q ss_pred eccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEE-EEEcCCCCcEEEEEcCCCcEEE
Q 011160 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK-LAIEPGSPHVFYTCGEDGLVQH 177 (492)
Q Consensus 99 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~l~~~~~dg~i~i 177 (492)
.+.+|...|..+++. ++..++++++||++++|+-...+......+.+|.+.|.. +++.+.....+++|+.|++|.+
T Consensus 9 ~l~gH~~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EeccCccchheeEec---CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 347999999999887 466899999999999999888887777778888888877 8887633346899999999999
Q ss_pred EeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcC
Q 011160 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (492)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (492)
|.+.+..+...+.. |...|.+++...+ + .+++|+.|.++++|-..... ...
T Consensus 86 ~~~~~~~P~~~Lkg----------H~snVC~ls~~~~-~-~~iSgSWD~TakvW~~~~l~-----------------~~l 136 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKG----------HKSNVCSLSIGED-G-TLISGSWDSTAKVWRIGELV-----------------YSL 136 (745)
T ss_pred EecCCCCchhhhhc----------cccceeeeecCCc-C-ceEecccccceEEecchhhh-----------------ccc
Confidence 99999999888875 6668999887766 4 49999999999999886532 236
Q ss_pred CCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee
Q 011160 258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (492)
Q Consensus 258 ~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (492)
.+|...|++++.-|.+.++..+.|..|++|.-. ..+++|.
T Consensus 137 ~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~----------------------------------------~~l~tf~ 176 (745)
T KOG0301|consen 137 QGHTASVWAVASLPENTYVTGSADKTIKLWKGG----------------------------------------TLLKTFS 176 (745)
T ss_pred CCcchheeeeeecCCCcEEeccCcceeeeccCC----------------------------------------chhhhhc
Confidence 679999999999999955555557799999863 4688999
Q ss_pred ccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 338 ~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+|... |+++++ -++ ..+++++.||.|++|++ +|+++.++.+|.+-|.++...+++..++|+|.|++++||+...
T Consensus 177 gHtD~--VRgL~v-l~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 177 GHTDC--VRGLAV-LDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred cchhh--eeeeEE-ecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 99998 999998 444 46788899999999999 9999999999999999999888899999999999999999873
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.7e-25 Score=176.74 Aligned_cols=273 Identities=15% Similarity=0.200 Sum_probs=197.5
Q ss_pred eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC--CeeeeEEeecCCCceEEEEEc-CCCCcEEEEEcCCC
Q 011160 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER--GGVETKLLGKHQGRAHKLAIE-PGSPHVFYTCGEDG 173 (492)
Q Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~i~~~-~~~~~~l~~~~~dg 173 (492)
..+..+|..-|+++.|.+ .|+.+++|+.|++|+|||.... ..........|.+.|..+.|. |.-.+.+++++.|+
T Consensus 6 ~pi~s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccccCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 345568999999999999 9999999999999999997543 334445578899999999995 44447999999999
Q ss_pred cEEEEeCCCCCccc----eeecCCCCCCCcceeecceEEEEEcCCC-CceEEEecCCCeEEEEecccccccCCCCCCCCc
Q 011160 174 LVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (492)
Q Consensus 174 ~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 248 (492)
++.||.-....... -........ ....|+.+.|.|.. |-.+++++.||.+|||+....-.+..-.+...+
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~D-----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVD-----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeec-----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999753111100 000000000 44579999999962 567899999999999987654322211111000
Q ss_pred cccCCCCcCCCcccceEEEEEcCC---CCeeEeecCC------cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 249 DYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
.........+...-.|+.|+|. ..+||.|++. .++||........
T Consensus 159 --~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK------------------------ 212 (361)
T KOG2445|consen 159 --QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK------------------------ 212 (361)
T ss_pred --hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce------------------------
Confidence 0011123345667889999985 4689999876 6899987764321
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCC----cEEEEeeccCeEEEEecCC--------------------C
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKG--------------------G 375 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g----~~l~sg~~dg~i~iwd~~~--------------------~ 375 (492)
...+..+.+|..+ |+.++| .|+- .+||+++.|| |+||++.. -
T Consensus 213 ----------w~kva~L~d~~dp--I~di~w-APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 213 ----------WLKVAELPDHTDP--IRDISW-APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ----------eeeehhcCCCCCc--ceeeee-ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 2344566688887 999999 8863 5899999999 99999862 1
Q ss_pred eeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+.+..+..|.+.|..+.|+-.|..|++.|.||+||+|...-
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 34456788999999999999999999999999999997643
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=4.8e-25 Score=176.87 Aligned_cols=300 Identities=17% Similarity=0.243 Sum_probs=211.8
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeee---eeEeecCccceEEEEEEcC-CCCEEEEecCCC
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLG---IYAKLDKHRGCVNTVSFNT-DGDILISGSDDR 83 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~ 83 (492)
-.|+++++|+.||.|.|||++.-.--.. ...+.+-. ....-.+|+-.|.++.|-| |..++.+++.|.
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~---------s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEA---------SGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhh---------ccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 4578899999999999999984321100 00001111 1123357899999999998 667899999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCC-CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
+++|||..+-+....| .-.+.|++-+++|..- -.++|+|..+-.|++.|+.++..... +.+|.+.|.++.|+|..
T Consensus 125 tlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSS 200 (397)
T ss_pred eEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--eccccCceEEEEeccCc
Confidence 9999999998887777 3567899999998543 34667788889999999999887765 99999999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCC-CccceeecCCCC---C-CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 163 PHVFYTCGEDGLVQHFDLRTG-AATELFTCRPID---D-RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~---~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
..+|++|+.||.|++||++.. .+...+..+... . .....+.+.++.++|..+ +.++++.+.|..+++|+..+++
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCc
Confidence 899999999999999999875 333333322210 0 112347778999999998 7899999999999999998876
Q ss_pred ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-CCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCC
Q 011160 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (492)
.... .++ ..+..... ...+. +. +-+ +.++..-.++.+.++++-.
T Consensus 280 ntl~-~~g----~~~~n~~~---~~~~~-~~-~~~s~vfv~~p~~~~lall~~~s------------------------- 324 (397)
T KOG4283|consen 280 NTLR-EFG----PIIHNQTT---SFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLE------------------------- 324 (397)
T ss_pred cccc-ccc----cccccccc---cceEE-Ee-ecccceEEEEecCCeEEEEEccC-------------------------
Confidence 3211 000 00000000 01111 22 122 2233333356777777765
Q ss_pred CCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
...++.+.+|-. .+.+..| .|+=+...+|..|+.|..|-.
T Consensus 325 -------------gs~ir~l~~h~k--~i~c~~~-~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 325 -------------GSFVRRLSTHLK--RINCAAY-RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -------------ceEEEeeecccc--eeeEEee-cCchhhhhccccCCccccccc
Confidence 355667777743 3677776 899999999999999999976
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=3.6e-25 Score=179.87 Aligned_cols=286 Identities=20% Similarity=0.301 Sum_probs=211.8
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCc------------eeeeeccCcCcceEEEEecCC-----CCCceEEeec
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER------------VKLSFHSGHNDNVFQAKIMPF-----TDDRSIVTCA 125 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~~~~ 125 (492)
-...+.|+|||..|++-+.|..+.+|++.... ....+.......|+..+|-+. .+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 45678999999999999999999999985211 011111123346777777521 1678899999
Q ss_pred CCCcEEEEecccCCeeeeEEeecCCCc---eEEEEEcCCCCcEEEEEcCCCcEEEEeC-CCCCccceeecCCCCCCCcce
Q 011160 126 ADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPHVFYTCGEDGLVQHFDL-RTGAATELFTCRPIDDRRNYM 201 (492)
Q Consensus 126 ~dg~v~iw~~~~~~~~~~~~~~~~~~~---v~~i~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~ 201 (492)
.+.-|++||.-+++.........|.+. ..+++|+|||. .|+ ++....|+++|+ +.+.....+..... ....
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~c~vy~t~~~---~k~g 205 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRDCPVYTTVTK---GKFG 205 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCCCcchhhhhc---cccc
Confidence 999999999999877655333445443 45899999995 544 456789999999 55543332221111 0111
Q ss_pred eecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-
Q 011160 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN- 280 (492)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 280 (492)
..+-+.+++|+|.+...+++|+....+-||.-..+. +..+..+|.+.|+.+.|.++|..|.+|.
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------pl~llggh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------PLQLLGGHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCC---------------ceeeecccCCCeeeEEeccCcCeeccccc
Confidence 455789999999977899999998888888766554 4556778999999999999999999998
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEe-ecCCCcEE
Q 011160 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEYV 358 (492)
Q Consensus 281 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~s~~g~~l 358 (492)
++.|..||++.. ..++..+..|.... -..|-| ..|+|++|
T Consensus 271 k~dkIl~WDiR~~-------------------------------------~~pv~~L~rhv~~T-NQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 271 KDDKILCWDIRYS-------------------------------------RDPVYALERHVGDT-NQRILFDLDPKGEIL 312 (406)
T ss_pred CCCeEEEEeehhc-------------------------------------cchhhhhhhhccCc-cceEEEecCCCCcee
Confidence 568999999864 34455566665421 123333 37999999
Q ss_pred EEeeccCeEEEEecCC-CeeeEEEecCCceeEEEeecCCCCeEEEeeCC
Q 011160 359 VSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (492)
Q Consensus 359 ~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 406 (492)
++|+.||.|++||+++ |..+..+..|...++.++++|--.++|+++..
T Consensus 313 asG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred eccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 9999999999999998 78788888899999999999998899988754
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.2e-25 Score=201.36 Aligned_cols=243 Identities=14% Similarity=0.225 Sum_probs=193.5
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccC-cchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELG-QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
++|.|+|..|.|++.||.|++|+...- ..+ .++.-|...|.+++.. +.+|++|+.+
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P---------------------~ti~~~g~~v~~ia~~--s~~f~~~s~~ 75 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEP---------------------ETIDISGELVSSIACY--SNHFLTGSEQ 75 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCC---------------------chhhccCceeEEEeec--ccceEEeecc
Confidence 568899999999999999999987754 222 2233377888888875 5589999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
++|.+|....++.- .++...+-++.+++|+- +|+++|.|+.|-.|++.++........ +.+|..+|.++.|+|.+
T Consensus 76 ~tv~~y~fps~~~~-~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~--lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 76 NTVLRYKFPSGEED-TILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKV--LRGHDAPVLQLSYDPKG 150 (933)
T ss_pred ceEEEeeCCCCCcc-ceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchhee--ecccCCceeeeeEcCCC
Confidence 99999999888763 23355677899999998 999999999999999999988776655 89999999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
.+|++.+-||.|++|++.++.....+....... .......+..++|+|+++ .++....|+.|++|+.........+
T Consensus 151 -~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n--~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 151 -NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN--EFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred -CEEEEEecCceEEEEEcccchhhhhcccCCccc--cccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheee
Confidence 689999999999999999998877665432211 111244678899999954 6666678999999999887643321
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (492)
....+...+..++|+|+|+|||+++ ++.|.|||+++
T Consensus 227 -------------r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 -------------RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -------------cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 1122344599999999999999999 88999999986
No 148
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=1e-24 Score=192.72 Aligned_cols=198 Identities=16% Similarity=0.183 Sum_probs=134.2
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeee-eeeEeecCccceEEEEEEcCCCCEEEEecCCCeE
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (492)
+-...+||||+.|..|+||.+..|--. .+ .....+.+..-.|-|+.|+|...-|+..+..|++
T Consensus 89 pF~D~LLAT~S~D~~VKiW~lp~g~~q----------------~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 89 PFADELLATCSRDEPVKIWKLPRGHSQ----------------KLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ccchhhhhcccCCCeeEEEecCCCccc----------------ccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 344567999999999999998733211 11 1112344445688999999965445555566999
Q ss_pred EEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc-eEEEEEcCCCCc
Q 011160 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR-AHKLAIEPGSPH 164 (492)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~ 164 (492)
+|||+.+++....+ .+|...|.++.|+. ||.+|++++.|..|+|||.+...... +...+|.+. -..+.|.-+-.
T Consensus 153 ~i~D~stqk~~~el-~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~pi-Q~te~H~~~rdsRv~w~Gn~~- 227 (1012)
T KOG1445|consen 153 YITDISTQKTAVEL-SGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPI-QTTEGHGGMRDSRVLWAGNWE- 227 (1012)
T ss_pred EEEEcccCceeecc-cCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCcc-ccccccccchhheeeeccchh-
Confidence 99999999998887 89999999999999 99999999999999999987643322 225667543 23466665543
Q ss_pred EEEEEcCC----CcEEEEeCCCCC-ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecc
Q 011160 165 VFYTCGED----GLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 165 ~l~~~~~d----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~ 234 (492)
.|++.+.+ ..|++||.+.-. ....+... ....+.---|.||.+-++++|-.+.++..+.+.
T Consensus 228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld---------~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELD---------SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred hhhhcccchhhheeeeeeeccccCCcceeEEee---------cccceEeeeecCCCceEEEecCCcceEEEEEec
Confidence 34554443 568999987643 23333221 222455556788755555666666667666553
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.3e-27 Score=210.51 Aligned_cols=236 Identities=18% Similarity=0.317 Sum_probs=203.8
Q ss_pred ecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc
Q 011160 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (492)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 136 (492)
+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+ .+|..+|.++.|++ ...+|++|+.+|+|++||+.
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~--~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDT--SERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCc--chhhhcccccCCceeeeehh
Confidence 4568999999998778899999999999999999887777776 79999999999999 89999999999999999999
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
..+.+.. +.+|...+.++.|+|-+ .+++.|+.|+.+++||++...+...+.. |...+..+.|+|+ |
T Consensus 101 eAk~vrt--Ltgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s----------~~~vv~~l~lsP~-G 166 (825)
T KOG0267|consen 101 EAKIVRT--LTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKS----------HTRVVDVLRLSPD-G 166 (825)
T ss_pred hhhhhhh--hhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecC----------CcceeEEEeecCC-C
Confidence 8776665 89999999999999999 5779999999999999998877777654 4446888899997 7
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~ 296 (492)
.+++.|+.|..++|||+..+++
T Consensus 167 r~v~~g~ed~tvki~d~~agk~---------------------------------------------------------- 188 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKL---------------------------------------------------------- 188 (825)
T ss_pred ceeeccCCcceeeeeccccccc----------------------------------------------------------
Confidence 8999999999999999876542
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
...|.+|... +..+.| +|..-++++|+.|++|++||+++.+
T Consensus 189 ------------------------------------~~ef~~~e~~--v~sle~-hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 189 ------------------------------------SKEFKSHEGK--VQSLEF-HPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ------------------------------------cccccccccc--cccccc-CchhhhhccCCCCceeeeeccceeE
Confidence 3445556555 677777 9998899999999999999999999
Q ss_pred eeEEEecCCceeEEEeecCCCCeEEEeeCC
Q 011160 377 LIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (492)
Q Consensus 377 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 406 (492)
.+.........|.+++|+|++..+++|...
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchh
Confidence 998888888889999999999988888654
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=3.3e-25 Score=180.41 Aligned_cols=319 Identities=11% Similarity=0.195 Sum_probs=224.6
Q ss_pred cCccceEEEEEEcC-----CCCEEEEecCCCeEEEEECCCCc---eeeeecc-CcCcceEEEEecCCC--CCceEEeecC
Q 011160 58 DKHRGCVNTVSFNT-----DGDILISGSDDRRVILWDWKTER---VKLSFHS-GHNDNVFQAKIMPFT--DDRSIVTCAA 126 (492)
Q Consensus 58 ~~h~~~v~~~~~s~-----~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-~~~~~v~~~~~~~~~--~~~~l~~~~~ 126 (492)
..|..+|..++|++ +-+.+||+|. +.+.+|...... .++.+.. .|....+.++|+-.. ...++|+++.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 47889999999985 2357777776 478999876443 2333333 367778888887621 2457888999
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
-|.|+|.|+.+++.... +.+|...|+.+.++|+.++++++++.|.+|++|++++..++..+..... |...|
T Consensus 114 ~GvIrVid~~~~~~~~~--~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg-------HrdeV 184 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKN--YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG-------HRDEV 184 (385)
T ss_pred eeEEEEEecchhhhccc--eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc-------ccCcE
Confidence 99999999988877665 8899999999999999999999999999999999999999988865433 66789
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCC-------------CCccccCCCCcCCCcccceEEEEEcCCC
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG-------------QPADYFCPPNLIGDEQVGITGLAFSDQS 273 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (492)
.++.|+++ +.+|++++.|..+++|++...+....+... .+...+.......-|...|-|+.|- |
T Consensus 185 LSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 185 LSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 99999998 679999999999999999865433222111 1111111111223355666666664 4
Q ss_pred CeeEeec-CCcEEEEecCC-CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee
Q 011160 274 ELLVSYN-DEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (492)
Q Consensus 274 ~~l~~~~-~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (492)
.++++-+ ++.|..|.... ........ +|. .....+..+.-..........+|
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vk-p~e------------------------s~~Ti~~~~~~~~c~iWfirf~~- 315 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVK-PPE------------------------SATTILGEFDYPMCDIWFIRFAF- 315 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccC-CCc------------------------cceeeeeEeccCccceEEEEEee-
Confidence 6777766 77899998732 11100000 000 00112233333333322333444
Q ss_pred cCCCcEEEEeeccCeEEEEecCCCeee--EEEecC--CceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~~~~~~--~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
+|-+++||.|...|.|++||+...++. .++..+ ...|.+.+|+.|+.+|+..+.|++|.-||.-
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 888999999999999999999877653 233222 3469999999999999999999999999864
No 151
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-26 Score=207.69 Aligned_cols=223 Identities=20% Similarity=0.352 Sum_probs=190.6
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
++.+++|+.|-.+.||.....-. ...|.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~---------------------i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNA---------------------ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred ceeeccCCCceeeccccccCCch---------------------hheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 45677777777777777653222 245889999999999999999999999999999999
Q ss_pred CCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEE
Q 011160 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 169 (492)
++.+..++++ .+|...+.++.|+| -+.+.+.|+.|+.+++||++...+... +.+|...|..+.|+|+| .+++.+
T Consensus 99 leeAk~vrtL-tgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~--~~s~~~vv~~l~lsP~G-r~v~~g 172 (825)
T KOG0267|consen 99 LEEAKIVRTL-TGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHT--YKSHTRVVDVLRLSPDG-RWVASG 172 (825)
T ss_pred hhhhhhhhhh-hccccCcceeeecc--ceEEeccccccccceehhhhccCceee--ecCCcceeEEEeecCCC-ceeecc
Confidence 9999988877 79999999999999 899999999999999999997777766 78899999999999999 689999
Q ss_pred cCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCcc
Q 011160 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (492)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 249 (492)
+.|.++++||+..++....|.. |...+..+.|+|. ..++++|+.|+++++||+++.+.+...
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~----------~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~------- 234 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKS----------HEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSG------- 234 (825)
T ss_pred CCcceeeeeccccccccccccc----------ccccccccccCch-hhhhccCCCCceeeeeccceeEEeecc-------
Confidence 9999999999999999888875 5557888999997 678999999999999999987755431
Q ss_pred ccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEE
Q 011160 250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (492)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~ 285 (492)
......|.+++|+|+++.+.+|....+.
T Consensus 235 --------~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 235 --------KPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred --------CCccCCceeeeecCCceeeecCchhhhh
Confidence 2235689999999999998888765544
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8e-25 Score=179.21 Aligned_cols=290 Identities=16% Similarity=0.193 Sum_probs=201.2
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC--CCCEEEEecCCCeEEEE
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDRRVILW 88 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~iw 88 (492)
.++|++.+.|.|+|||..+|+.+ ..+++|...++.++|.. ....+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---------------------~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---------------------EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---------------------heecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 66999999999999999998888 78999999999999976 45778999999999999
Q ss_pred ECCCCceeeeec-cCcC-cceEEEEecCCCCCceEEeec----CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 89 DWKTERVKLSFH-SGHN-DNVFQAKIMPFTDDRSIVTCA----ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 89 d~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
|++.......+. .++. .+..+++..- .++.+++|. .+-.|.+||++..+.........|.+.|+++.|+|..
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccC--cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 998876655543 3344 3566777665 667777765 3568999999988774444567899999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCc----cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAA----TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
+++|++|+.||-|.+||++.... ...+. +...|.++.|...+-+.|.+-+......+|++..+..
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-----------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-----------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHHhhc-----------ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 99999999999999999976532 22222 4557999999987556788999999999999988763
Q ss_pred cCCCCCCCCccccCCCCcCCCcccceEEEEEcC-CCCe-eEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCC
Q 011160 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSEL-LVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (492)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (492)
.... ..+...............-|.+ .+| +... .+.++ .++..++-+......
T Consensus 247 ~~~~--~~~~~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~-------------------- 302 (376)
T KOG1188|consen 247 ETWL--ENPDVSADDLRKEDNCDYVINE--HSPGDKDTCALAGTDSNKGTIFPLVDTSSG-------------------- 302 (376)
T ss_pred hhcc--cCccchhhhHHhhhhhhheeec--ccCCCcceEEEeccccCceeEEEeeecccc--------------------
Confidence 2221 1110000000000000111111 123 2233 33333 344444443321100
Q ss_pred CCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
.....+..+.++... .|+++.| ...+.++.+|++||.+.+|..
T Consensus 303 ------------~~~~~~a~l~g~~~e-iVR~i~~-~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 303 ------------SLLTEPAILQGGHEE-IVRDILF-DVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ------------cccCccccccCCcHH-HHHHHhh-hcccceeeccCCCceEEEEec
Confidence 113455666664433 2788887 788899999999999999986
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.8e-24 Score=184.50 Aligned_cols=293 Identities=14% Similarity=0.138 Sum_probs=212.7
Q ss_pred eEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCc--cceEEEEEEcCCCC-EEEEecCCCeEEEE
Q 011160 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH--RGCVNTVSFNTDGD-ILISGSDDRRVILW 88 (492)
Q Consensus 12 ~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~-~l~s~~~d~~i~iw 88 (492)
+.++.+.| .++|||...-.... .+..| .-.+.++.|+.... .+++.+.|..|++|
T Consensus 5 l~~aS~gd-~~kl~D~s~~~~~~---------------------~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~ 62 (673)
T KOG4378|consen 5 LHVASTGD-KTKLSDFSDLETKS---------------------EYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIK 62 (673)
T ss_pred eeeeccCC-ceEEeecccccCcc---------------------ccccCCCCCcceeeeccccceEEEeecCCceeEEEe
Confidence 43443434 69999998544432 12222 22488999987653 33445678899999
Q ss_pred ECCCC--ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEE
Q 011160 89 DWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (492)
Q Consensus 89 d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 166 (492)
.-... +. ..........-.|++... ...++++|+..+.|+|||++...+. +.+.+|...|+++.++-.. .+|
T Consensus 63 ~K~g~~~~V-p~~~k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~kl~h--r~lkdh~stvt~v~YN~~D-eyi 136 (673)
T KOG4378|consen 63 EKDGKTPEV-PRVRKLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRAKLIH--RFLKDHQSTVTYVDYNNTD-EYI 136 (673)
T ss_pred cccCCCCcc-ceeeccccchHHHHhhhh--cceeeeccCcCceeeehhhHHHHHh--hhccCCcceeEEEEecCCc-cee
Confidence 74322 11 111111222444555544 5579999999999999999854333 4489999999999999887 478
Q ss_pred EEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCC
Q 011160 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (492)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 246 (492)
++++..|.|.|..+.++.....|... ....+.-+.|+|....+|.+++.+|.|.+||+.....
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~---------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-------- 199 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTID---------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-------- 199 (673)
T ss_pred EEeccCCcEEEEecccCccccceecC---------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------
Confidence 99999999999999999887777642 2334678999998667788999999999999987542
Q ss_pred CccccCCCCcCCCcccceEEEEEcCCC-CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 247 PADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
.......|..+...++|+|.. .+|++.+ |.+|.+||.....
T Consensus 200 ------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~------------------------------- 242 (673)
T KOG4378|consen 200 ------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA------------------------------- 242 (673)
T ss_pred ------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-------------------------------
Confidence 234556688999999999966 4566666 7789999998632
Q ss_pred CCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC-eeeEEEecCCceeEEEeecCCC
Q 011160 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHS 397 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~ 397 (492)
....+.... +...++| +++|.+|+.|...|.|..||++.. .++..+..|...|++++|-|.-
T Consensus 243 -------s~~~l~y~~---Plstvaf-~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 243 -------STDRLTYSH---PLSTVAF-SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -------ccceeeecC---Ccceeee-cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 222222222 1678898 999999999999999999999754 6788999999999999997764
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=9.1e-24 Score=187.89 Aligned_cols=273 Identities=18% Similarity=0.225 Sum_probs=204.9
Q ss_pred CCCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 1 ~~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
|.+++|-|||..|+.+..+ .+.|||.+.|.+. +++++|+..|+|++|+.||+.+|+|+
T Consensus 15 i~d~afkPDGsqL~lAAg~-rlliyD~ndG~ll---------------------qtLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGS-RLLVYDTSDGTLL---------------------QPLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred hheeEECCCCceEEEecCC-EEEEEeCCCcccc---------------------cccccccceEEEEEEccCCceeccCC
Confidence 4578899999998777744 7999999999988 88999999999999999999999999
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.|+.|.+|.-.- +-+..+ .|...|.||.|+| -...|++++-. ..-+|......... ......+.+.+|..
T Consensus 73 aDK~VI~W~~kl-EG~LkY--SH~D~IQCMsFNP--~~h~LasCsLs-dFglWS~~qK~V~K----~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 73 ADKSVIIWTSKL-EGILKY--SHNDAIQCMSFNP--ITHQLASCSLS-DFGLWSPEQKSVSK----HKSSSRIICCSWTN 142 (1081)
T ss_pred CceeEEEecccc-cceeee--ccCCeeeEeecCc--hHHHhhhcchh-hccccChhhhhHHh----hhhheeEEEeeecC
Confidence 999999998543 323343 6999999999999 88899998864 46788875533221 12346788999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC----ceEEEecCCCeEEEEecccc
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA----NLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~v~i~d~~~~ 236 (492)
|| .+|+.|-.+|+|.+-+- +++....+..+.. ...+|.+++|+|..+ ..+++.....++.+|.+...
T Consensus 143 DG-qylalG~~nGTIsiRNk-~gEek~~I~Rpgg-------~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 143 DG-QYLALGMFNGTISIRNK-NGEEKVKIERPGG-------SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred CC-cEEEEeccCceEEeecC-CCCcceEEeCCCC-------CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 99 68999999999999853 3443333332221 556899999999732 46778888888888887654
Q ss_pred cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCC
Q 011160 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (492)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (492)
.....- .-.....|+.+.++|.++..|+ ++.+.+|.-+.
T Consensus 214 ~Igk~r----------------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G------------------------ 253 (1081)
T KOG1538|consen 214 QIGKDR----------------ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG------------------------ 253 (1081)
T ss_pred eecccc----------------cCCCCchhheeccCCcEEEEccCCCceEEEeecC------------------------
Confidence 321111 0123456889999999887776 66788887553
Q ss_pred CCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
..+.++.... ..|..+.. .|++++++.|+.||+|..|++
T Consensus 254 ---------------vrLGTvg~~D--~WIWtV~~-~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 254 ---------------VRLGTVGEQD--SWIWTVQA-KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ---------------eEEeeccccc--eeEEEEEE-ccCCceEEEEEccCeeehhhh
Confidence 2222222222 24889998 999999999999999999987
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=211.78 Aligned_cols=290 Identities=15% Similarity=0.206 Sum_probs=220.0
Q ss_pred EEEEEcCCCC-EEEEe----------cCCCeEEEEECCCC--c----eeeeeccCcCcceEEEEecCCCCCc----eEEe
Q 011160 65 NTVSFNTDGD-ILISG----------SDDRRVILWDWKTE--R----VKLSFHSGHNDNVFQAKIMPFTDDR----SIVT 123 (492)
Q Consensus 65 ~~~~~s~~~~-~l~s~----------~~d~~i~iwd~~~~--~----~~~~~~~~~~~~v~~~~~~~~~~~~----~l~~ 123 (492)
-.++|+|++. ++|+| +.+.++-||.+... . .+..+ .-...-+.++|.+ .+. .|+.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~--~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGS--YGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecc--cCCCccceeec
Confidence 3578999886 55554 33456667655422 2 12222 2345778999998 444 4888
Q ss_pred ecCCCcEEEEecccC---C-eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCc
Q 011160 124 CAADGQVRHAQILER---G-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~---~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (492)
|..||.|.+|+...- . .........|.+.|..+.|++..+++|++|+.+|.|.|||+...+........
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~------- 158 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ------- 158 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC-------
Confidence 899999999998652 1 12223367899999999999999889999999999999999986554443211
Q ss_pred ceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEe
Q 011160 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVS 278 (492)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~ 278 (492)
.....|.+++|+..-.++|++++.+|.+.|||++..+.+-.+. .......+..++|+|+. ..|++
T Consensus 159 -~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-------------~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 159 -APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-------------DTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred -CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-------------cCCCccceeeeeeCCCCceeeee
Confidence 1345799999998777899999999999999999875332211 11122568899999986 34555
Q ss_pred ec-CC---cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC
Q 011160 279 YN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (492)
Q Consensus 279 ~~-~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 354 (492)
++ ++ .|.+||++.. ...++++++|... |.++.|...|
T Consensus 225 As~dd~~PviqlWDlR~a-------------------------------------ssP~k~~~~H~~G--ilslsWc~~D 265 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFA-------------------------------------SSPLKILEGHQRG--ILSLSWCPQD 265 (1049)
T ss_pred ecCCCCCceeEeeccccc-------------------------------------CCchhhhcccccc--eeeeccCCCC
Confidence 55 44 4999999864 4567888999988 9999993344
Q ss_pred CcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCC-eEEEeeCCCCEEEeccCCCC
Q 011160 355 CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 355 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 418 (492)
..+|++++.|+.|.+|+.++++.+..+....+.+..+.|+|... .++.++.||.|-|+.+.+..
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 48999999999999999999999999998888999999999887 78888999999999998764
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.2e-23 Score=168.39 Aligned_cols=293 Identities=15% Similarity=0.210 Sum_probs=200.2
Q ss_pred cCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
.+|..-|+++.|.+-|+.+|||+.|++|+|||..... +.... +.|.+.|..+.|.+..-|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4799999999999999999999999999999965433 23333 789999999999887779999999999999999
Q ss_pred eccc-------CCeeeeEEeecCCCceEEEEEcCCC-CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCC---CCccee
Q 011160 134 QILE-------RGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMT 202 (492)
Q Consensus 134 ~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~ 202 (492)
.=.. .+.+....+......|+++.|.|.. ...+++++.||.++||+......+.......... .+.-.+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 1234455577778899999999952 1568999999999999876543332211100000 000013
Q ss_pred ecceEEEEEcCCC--CceEEEecCC-----CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-C-
Q 011160 203 VVNLNAIAIDPRN--ANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S- 273 (492)
Q Consensus 203 ~~~v~~~~~~p~~--~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~- 273 (492)
..+..|+.|+|.. ..+|+.|+.+ +.++||........ ......+..|..+|+.++|.|+ |
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----------w~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----------WLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----------eeeehhcCCCCCcceeeeeccccCC
Confidence 4467889998752 3478887765 47888877543210 0112233468899999999997 3
Q ss_pred --CeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee
Q 011160 274 --ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (492)
Q Consensus 274 --~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (492)
.+||+++.+.|+||.+........-.. +.............+..+.+|... |..+.|
T Consensus 238 ~y~~lAvA~kDgv~I~~v~~~~s~i~~ee------------------~~~~~~~~~l~v~~vs~~~~H~~~--VWrv~w- 296 (361)
T KOG2445|consen 238 SYHLLAVATKDGVRIFKVKVARSAIEEEE------------------VLAPDLMTDLPVEKVSELDDHNGE--VWRVRW- 296 (361)
T ss_pred ceeeEEEeecCcEEEEEEeeccchhhhhc------------------ccCCCCccccceEEeeeccCCCCc--eEEEEE-
Confidence 468888855599999985321110000 000000000113445567788876 899999
Q ss_pred cCCCcEEEEeeccCeEEEEecCC---CeeeEEEec
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKKG---GELIRVIEA 383 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~~---~~~~~~~~~ 383 (492)
.-.|..|++.+.||+|++|...- .++...++.
T Consensus 297 NmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred eeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 89999999999999999998632 344455543
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.93 E-value=7.9e-24 Score=177.32 Aligned_cols=314 Identities=15% Similarity=0.203 Sum_probs=210.4
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
..+++||+.|..|+||.++.++--. ....+.....|..|...|+++.|+|+|.+||+|+.+|.|.+|.
T Consensus 26 ~~~laT~G~D~~iriW~v~r~~~~~------------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 26 LNKLATAGGDKDIRIWKVNRSEPGG------------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred ccceecccCccceeeeeeeecCCCC------------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3399999999999999998654331 1256677788999999999999999999999999999999998
Q ss_pred CC--------C-----C--ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceE
Q 011160 90 WK--------T-----E--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (492)
Q Consensus 90 ~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~ 154 (492)
.. + . -.+...+.+|...|+.++|+| ++.++++++.|..+++||+..+..... +..|...+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~--~~dh~~yvq 169 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAI--LDDHEHYVQ 169 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEee--ccccccccc
Confidence 65 2 1 123444578999999999999 999999999999999999999887766 889999999
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCC---CCCCcc----------eeecceEEEEEcCCCCceEEE
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI---DDRRNY----------MTVVNLNAIAIDPRNANLFAV 221 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~----------~~~~~v~~~~~~p~~~~~l~~ 221 (492)
.++|.|-+ +++++-+.|...+.+.+.....+........ ....++ .-..-...++|+|+ |.++++
T Consensus 170 gvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd-G~llvt 247 (434)
T KOG1009|consen 170 GVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD-GSLLVT 247 (434)
T ss_pred eeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC-CcEEEc
Confidence 99999998 5788888888777777665544433220000 000000 01123456678887 566666
Q ss_pred ecC----CCeE-----EEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCC
Q 011160 222 AGS----DEYT-----RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (492)
Q Consensus 222 ~~~----dg~v-----~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (492)
.+. .+.+ ++|+-...+ .|.........+...+.|+| ..|.++.
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~--------------rP~~~lp~~~k~~lavr~~p-------------Vy~elrp- 299 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLK--------------RPAARLPSPKKPALAVRFSP-------------VYYELRP- 299 (434)
T ss_pred ccceeeeCCceeeceeEeecccccc--------------CceeecCCCCcceEEEEeee-------------eEEEecc-
Confidence 432 1111 111111000 01111111122233333332 1122111
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
......... -|-+-.+|.++ ...|+|||.
T Consensus 300 ----------------------------------------------~~~~~~~~~----lpyrlvfaiAt-~~svyvydt 328 (434)
T KOG1009|consen 300 ----------------------------------------------LSSEKFLFV----LPYRLVFAIAT-KNSVYVYDT 328 (434)
T ss_pred ----------------------------------------------ccccccccc----cccceEEEEee-cceEEEecc
Confidence 000000111 23344455555 567999999
Q ss_pred CCCeeeEEEe-cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 373 KGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 373 ~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
++.+++.... -|-..|+.++|++||..|+..+.||-.-+-.++..++-
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 9988887654 47789999999999999999999998888777776655
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=179.26 Aligned_cols=262 Identities=19% Similarity=0.241 Sum_probs=188.3
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC-CCEEEEecCCCeEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVI 86 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~ 86 (492)
++..+.++-+..|.|+||++.. .+....... ..-.....+++.++.+|.+.=+.|+|||- ...|+||.--+.|+
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~---~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~ 237 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAP--HLNALSEPG---LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIH 237 (440)
T ss_pred CCcceeeeecccCcEEEEEchh--hhhhhcCcc---ccccccccCceEEecccCccceeeecccccccccccCccccceE
Confidence 3566788888999999999862 111100000 01111345778899999999999999993 23588888888999
Q ss_pred EEECCCCcee---eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 87 LWDWKTERVK---LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 87 iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
+|...++.-. ..+ .+|+..|-.++|+|. ....|++|+.||+|+|||++.+..........|...|+.|.|+..-+
T Consensus 238 lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSpt-E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 238 LWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPT-EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP 315 (440)
T ss_pred eeeeccCceeecCccc-cccccchhhhccCCc-cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence 9998887542 223 579999999999993 56789999999999999999985555555688999999999999986
Q ss_pred cEEEEEcCCCcEEEEeCCCCCc---cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
+|++|+.||+++|||++.-+. +..|+. |..+|+++.|+|.....|++++.|.+|.+||+....-..
T Consensus 316 -lLasG~DdGt~~iwDLR~~~~~~pVA~fk~----------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 316 -LLASGGDDGTLSIWDLRQFKSGQPVATFKY----------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred -eeeecCCCceEEEEEhhhccCCCcceeEEe----------ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 899999999999999987543 444443 777999999999878899999999999999996543210
Q ss_pred C---CCCCCCccccCCCCcC-CCcccceEEEEEcCCC-CeeEeecCCcEEEEe
Q 011160 241 S---TDFGQPADYFCPPNLI-GDEQVGITGLAFSDQS-ELLVSYNDEFIYLFT 288 (492)
Q Consensus 241 ~---~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~-~~l~~~~~~~i~~~d 288 (492)
. ...+. .....++.++ ...+..+..+.|+++- .+|++.+-+.+.||-
T Consensus 385 e~~~~a~~~-L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 385 EIDQEAAEG-LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hhccccccc-hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 0 00000 0011111111 1135678889999964 466666655555553
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=3.4e-24 Score=177.71 Aligned_cols=269 Identities=20% Similarity=0.292 Sum_probs=194.9
Q ss_pred EeecCccceEEEEEEcCCC--CEEEEecCCCeEEEEECCC----------------CceeeeeccCcCcceEEEEecCCC
Q 011160 55 AKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKT----------------ERVKLSFHSGHNDNVFQAKIMPFT 116 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~ 116 (492)
....+|.+.++-+..++-+ .+.|+=+..|.|+||++.. .+++.++ .+|...=++++|||.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~- 222 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPI- 222 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecccc-
Confidence 4445788889888888754 5666667889999999853 2345666 789999999999995
Q ss_pred CCceEEeecCCCcEEEEecccCCee-eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCC
Q 011160 117 DDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (492)
....|++|.--+.|++|...++... -...+.+|+..|..++|+|....+|++|+-||+|+|||++.+.....+...
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k--- 299 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK--- 299 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee---
Confidence 3445888888889999999887653 234577899999999999998889999999999999999998544333221
Q ss_pred CCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC--
Q 011160 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-- 273 (492)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-- 273 (492)
.|.+.|+.|.|+..- .+|++|+.||+++|||+|+.+.. .+...+..|..+|+++.|+|..
T Consensus 300 -----Ah~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~------------~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 300 -----AHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG------------QPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred -----ccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC------------CcceeEEeccCCeeEEEeccccCc
Confidence 166789999999874 49999999999999999986532 2445666789999999999954
Q ss_pred CeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC
Q 011160 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (492)
Q Consensus 274 ~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 353 (492)
.+.+++.|+.|.+||+............. .......+.+.+.-|.....+..+.| ++
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a----------------------~~~L~dlPpQLLFVHqGQke~KevhW-H~ 418 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEA----------------------AEGLQDLPPQLLFVHQGQKEVKEVHW-HR 418 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhcccc----------------------ccchhcCCceeEEEecchhHhhhhee-cc
Confidence 34455558899999997643321111000 00000223445556666556888888 65
Q ss_pred CC-cEEEEeeccCeEEEE
Q 011160 354 KC-EYVVSGSDCGRIFIW 370 (492)
Q Consensus 354 ~g-~~l~sg~~dg~i~iw 370 (492)
.- .+|++.+.||. .||
T Consensus 419 QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 419 QIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred CCCCeEEEecccce-eEE
Confidence 43 47777777873 344
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.5e-24 Score=182.32 Aligned_cols=254 Identities=17% Similarity=0.239 Sum_probs=187.3
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeee----eeeEeecCccceEEEEEEcCC-CCEEEEecCC
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL----GIYAKLDKHRGCVNTVSFNTD-GDILISGSDD 82 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d 82 (492)
..|+++|.|..|..|.|||+.--..+.. ...-++. ..... +.-....+|+..|.+++|+.. ...||+||.|
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P---~~~LGs~-~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLP---CVTLGSK-ASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CCcceEEEeccCceeEEecccccccccc---ceeechh-hhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 3467999999999999999873221110 0000000 00000 111223479999999999875 4789999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
.+|++||+.++++...+ ..|.+.|.++.|+|. ....|++|+.|++|.+.|.+....... .-...+.|-.++|.|..
T Consensus 266 ~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~--~wk~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGK--EWKFDGEVEKVAWDPHS 341 (463)
T ss_pred ceEEEEEcCCCCcceeh-hhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCc--eEEeccceEEEEecCCC
Confidence 99999999999998777 689999999999995 688999999999999999986433222 22345789999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCC-CccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
++.+++++.||+|+-+|+|.. +++..++. |..+|.++++++..+.++++++.++.|++|++........
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~~vwt~~A----------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGKPVWTLKA----------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCCceeEEEe----------ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 999999999999999999987 66666654 6779999999998889999999999999999875431100
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec-CCcEEEEecCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~ 292 (492)
....-.-+...|.++.|+-. +++.|+ .+.+++||+.+.
T Consensus 412 -------------~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 412 -------------KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred -------------ccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 00000123467778888764 455555 446999999875
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=4.3e-24 Score=168.72 Aligned_cols=302 Identities=14% Similarity=0.115 Sum_probs=205.1
Q ss_pred eEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+......+.-.|...|+.+.-.| + ..|.+-+.|+.+.+|
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceEEEE
Confidence 456779999999999987765 899999999999999998887777336788999999988 5 778999999999999
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC-cEEEEeCCC---------CCccceeecCCCCCCCcceee
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHFDLRT---------GAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~ 203 (492)
++.....+.. |+-.++++-|.+.. +...+... ....++-+. +...+.. ..... .....
T Consensus 83 ~ia~s~~i~i-----~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~-i~dd~---~~~Kl 150 (323)
T KOG0322|consen 83 TIAYSAFISI-----HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ-IADDS---ERSKL 150 (323)
T ss_pred EccCcceEEE-----eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeE-ccCch---hcccc
Confidence 9987655443 33445556555432 22222111 111222111 1111111 11100 00123
Q ss_pred cceEEEEEcCCC--CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-
Q 011160 204 VNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN- 280 (492)
Q Consensus 204 ~~v~~~~~~p~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 280 (492)
+.+.+..+.-.. .-++++|.++|.+.+||+.++...-.+.. ..........|..+|.++.+.+.-..=++++
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----~~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----SSKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-----ccccccchhhccCcceeeeechhhcCCcCCCc
Confidence 345555543221 23567888999999999998743221111 0111222345788999999998654445555
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee-ccccceeeeeEEeecCCCcEEE
Q 011160 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVV 359 (492)
Q Consensus 281 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~g~~l~ 359 (492)
++.+..|.++......+ ...... .|.+ |..+.. -||++.+|
T Consensus 226 ~dkl~~~Sl~~s~gslq----------------------------------~~~e~~lknpG---v~gvrI-RpD~KIlA 267 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQ----------------------------------IRKEITLKNPG---VSGVRI-RPDGKILA 267 (323)
T ss_pred cccceeeeeccccCccc----------------------------------ccceEEecCCC---ccceEE-ccCCcEEe
Confidence 66899998875321111 111111 1222 677777 99999999
Q ss_pred EeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 360 SGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 360 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
+++.|+.||||+.++++++..++.|.+.|++++|+|+..++|+++.|++|-+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999999999999999999999986
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=9e-24 Score=179.59 Aligned_cols=297 Identities=17% Similarity=0.172 Sum_probs=202.1
Q ss_pred CCCCCC--ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC-CCEEEEecC
Q 011160 5 SNNNNN--KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSD 81 (492)
Q Consensus 5 ~~~~~~--~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~ 81 (492)
.|.|.. +++|+|..-|.|-+||+.+.+.. ..-...+..|.++|.+|.|+|. -..+++.|.
T Consensus 193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-----------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred EecccCcceEEEEccCCCcEEEEecCCCCCc-----------------cCceEEeccCCccccceEecCCChhheeeecc
Confidence 455554 57999999999999999632222 1123557789999999999995 478899999
Q ss_pred CCeEEEEECCCCceeeeeccC--cCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 82 DRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
||+|++-|++.+... .++.- -...+..+.|+. +...++.+..=|...+||.++++.... .+.-|...|++|+++
T Consensus 256 DGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~f~~iD~R~~~s~~~-~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGNFNVIDLRTDGSEYE-NLRLHKKKITSVALN 331 (498)
T ss_pred CceeeeeeecchhhH-HHhhcCccceeeeeccccC--CCccEEEeecccceEEEEeecCCccch-hhhhhhcccceeecC
Confidence 999999999876532 22122 344567788887 777788888778999999998765321 256688899999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
|-.+.+|++++.|++++|||++.-.....- -.....|...|.+..|+|.++. |++.+.|..|+|||..-....
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp------~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASP------FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCc------ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccccc
Confidence 999999999999999999999875443320 0011126678999999999765 999999999999998411000
Q ss_pred CCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
+ .+.... +.....+.--......|.|+..+++++. -..|-+||-..++
T Consensus 405 ----~-~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q------------------------- 453 (498)
T KOG4328|consen 405 ----D-EPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ------------------------- 453 (498)
T ss_pred ----C-Ccccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE-------------------------
Confidence 0 000000 0000110111234568999999999988 5579999977642
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEeeccCeEEEEecCC
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~~dg~i~iwd~~~ 374 (492)
.+..+..... .+|.++.-++|-+. +++.|+..|.|+||--+.
T Consensus 454 -------------~v~el~~P~~-~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 454 -------------MVCELHDPES-STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred -------------EeeeccCccc-cccccceeecccccceeccCCccceEEEEecCC
Confidence 1222222111 12555544599888 455556678999986543
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.4e-24 Score=183.29 Aligned_cols=253 Identities=17% Similarity=0.226 Sum_probs=196.1
Q ss_pred EeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 011160 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT 92 (492)
Q Consensus 13 l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 92 (492)
++..+.|..|++|.-. |+.. ..+....+.+. .-.|++......++++|+..+.|+|||++
T Consensus 50 vas~~gdk~~~~~~K~-g~~~----------------~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~- 109 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKD-GKTP----------------EVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR- 109 (673)
T ss_pred EeecCCceeEEEeccc-CCCC----------------ccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH-
Confidence 3445678899999755 4422 12223334433 23344444445899999999999999998
Q ss_pred CceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecC-CCceEEEEEcCCCCcEEEEEcC
Q 011160 93 ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-QGRAHKLAIEPGSPHVFYTCGE 171 (492)
Q Consensus 93 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~ 171 (492)
.+.+..++++|...|+++.|+- ...+||+++..|.|.|..+.++..... +... ...|.-+.|+|....+|.+++.
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt~--f~~~sgqsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTTT--FTIDSGQSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred HHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEEecccCccccc--eecCCCCeEEEeecccccceeeEeecc
Confidence 5556777799999999999998 899999999999999999988765443 4323 3556789999998888999999
Q ss_pred CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCcccc
Q 011160 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (492)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 251 (492)
+|.|.+||.....++..+... |..+...++|+|.+..+|++.+.|..|.+||.+..+....+.
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~---------HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-------- 248 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEA---------HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-------- 248 (673)
T ss_pred CCeEEEEeccCCCcccchhhh---------ccCCcCcceecCCccceEEEecccceEEEeecccccccceee--------
Confidence 999999999888776554322 677889999999988999999999999999999765433222
Q ss_pred CCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccc
Q 011160 252 CPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (492)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (492)
...+...++|+++|.+|++|+ .|.|+.||++.. .
T Consensus 249 --------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-------------------------------------k 283 (673)
T KOG4378|consen 249 --------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-------------------------------------K 283 (673)
T ss_pred --------ecCCcceeeecCCceEEEeecCCceEEEEecccC-------------------------------------C
Confidence 245788999999999999998 779999999975 4
Q ss_pred cCCceeeccccceeeeeEEeecCC
Q 011160 331 IAPQVYKGHRNCVTVKGVNFFGPK 354 (492)
Q Consensus 331 ~~~~~~~~~~~~~~v~~~~~~s~~ 354 (492)
.++..+..|... |++++| -|.
T Consensus 284 ~Pv~v~sah~~s--Vt~vaf-q~s 304 (673)
T KOG4378|consen 284 APVAVRSAHDAS--VTRVAF-QPS 304 (673)
T ss_pred CCceEeeecccc--eeEEEe-eec
Confidence 566777788877 888888 444
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3e-23 Score=170.04 Aligned_cols=290 Identities=13% Similarity=0.173 Sum_probs=201.1
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC-Cc
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GR 152 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~ 152 (492)
..+|++-..|.|++||..+++.+..+ +++...++.++|..-.....+.+|+.||+|++||++............++ .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 56888888999999999999988888 89999999999986324577899999999999999998887776666666 56
Q ss_pred eEEEEEcCCCCcEEEEEc----CCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCe
Q 011160 153 AHKLAIEPGSPHVFYTCG----EDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (492)
..+++..-.+ +++++|+ .+-.|.+||++..+. +..+.. .|...|+++.|+|.++++|++|+.||.
T Consensus 120 f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e---------SH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 120 FICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNE---------SHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred ceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhh---------hccCcceeEEecCCCCCeEEeecccce
Confidence 6777776555 5667664 356799999998776 333321 167789999999999999999999999
Q ss_pred EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC--CeeEeecCCcEEEEecCCCCCCCCCCCCCCCc
Q 011160 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (492)
Q Consensus 228 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 305 (492)
|.+||+....... ...... .+...|.++.|..++ ++.+....++..+|++..+.....+.....
T Consensus 190 vnlfD~~~d~EeD-----------aL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~-- 255 (376)
T KOG1188|consen 190 VNLFDTKKDNEED-----------ALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV-- 255 (376)
T ss_pred EEeeecCCCcchh-----------hHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc--
Confidence 9999997653111 011111 245679999999988 655555588999999988653222110000
Q ss_pred cccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec-cCeEEEEecC---CC---eee
Q 011160 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK---GG---ELI 378 (492)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-dg~i~iwd~~---~~---~~~ 378 (492)
.........+...+..... ..++...+.++. -++..++-+. ++ +.+
T Consensus 256 --------------------------~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~ 308 (376)
T KOG1188|consen 256 --------------------------SADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP 308 (376)
T ss_pred --------------------------hhhhHHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecccccccCcc
Confidence 0000000001111222221 334445554443 4555555432 33 344
Q ss_pred EEEec-CCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 379 RVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 379 ~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
..+.+ |...|.++.|...+.++.|||.||.+.+|..+
T Consensus 309 a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 309 AILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 55666 66678999999889999999999999999963
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.1e-22 Score=165.89 Aligned_cols=271 Identities=14% Similarity=0.167 Sum_probs=192.5
Q ss_pred CccceEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 59 KHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 59 ~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
.|......++|+-+ ..+||.||.-|.|+|.|+.+++....+ .+|...|+.+.+.|. +.+++++++.|..|++|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~-~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCC-CCcEEEEecCCceEEEEe
Confidence 47788888999754 458999999999999999999987777 899999999999992 567899999999999999
Q ss_pred cccCCeeeeE-EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecC----CC----------CCC--
Q 011160 135 ILERGGVETK-LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR----PI----------DDR-- 197 (492)
Q Consensus 135 ~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~----------~~~-- 197 (492)
+++..++... -+.+|.+.|.++.|++++. .|++++.|.+|++|++...+....+... +. ...
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 9998887652 2457999999999999995 8999999999999999855432222111 00 000
Q ss_pred --CcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceE--EEEEcCCC
Q 011160 198 --RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT--GLAFSDQS 273 (492)
Q Consensus 198 --~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~~ 273 (492)
....|...|.|+.|- +.++++-+-++.|..|.....+..-. ...++...........-....|. ..+|.|-+
T Consensus 244 fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~-~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIH-NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred ccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhh-ccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 111244556666665 46889988899999998843221100 00001100011111111223344 45566778
Q ss_pred CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeec
Q 011160 274 ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (492)
Q Consensus 274 ~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 352 (492)
+.||.+. .+++++||++..... ...++..+....+|...+| +
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~------------------------------------~~ttl~~s~~~~tVRQ~sf-S 362 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPP------------------------------------KCTTLTHSKSGSTVRQTSF-S 362 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCc------------------------------------cCceEEeccccceeeeeee-c
Confidence 8999998 668999999875321 2344555555556899998 9
Q ss_pred CCCcEEEEeeccCeEEEEecC
Q 011160 353 PKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 353 ~~g~~l~sg~~dg~i~iwd~~ 373 (492)
.||.+|+..++|++|.-||.-
T Consensus 363 ~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 363 RDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999999863
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=180.89 Aligned_cols=279 Identities=12% Similarity=0.177 Sum_probs=213.2
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
.|+.++|-|||..|+.+.. ..+.+||...|..+.++ ++|...|++++|+. +|+.+++|+.|..|.+|.-.-....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtL-KgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccccc-ccccceEEEEEEcc--CCceeccCCCceeEEEeccccccee-
Confidence 8999999999988877654 46999999999998887 89999999999999 9999999999999999986543322
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
-..|.+.|.||.|+|-. +.|++++-. ..-+|........+. + ....+.+.+|..| |.+++.|
T Consensus 89 ---kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K~-k-----------ss~R~~~CsWtnD-GqylalG 150 (1081)
T KOG1538|consen 89 ---KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSKH-K-----------SSSRIICCSWTND-GQYLALG 150 (1081)
T ss_pred ---eeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHhh-h-----------hheeEEEeeecCC-CcEEEEe
Confidence 34699999999999988 567877653 567888765543321 1 4457899999998 7999999
Q ss_pred cCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-----CeeEeecCC-cEEEEecCCCCCCC
Q 011160 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-----ELLVSYNDE-FIYLFTQDMGLGPN 296 (492)
Q Consensus 223 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-----~~l~~~~~~-~i~~~d~~~~~~~~ 296 (492)
-.+|+|.+-+-..... ......++.+.+|.+++|+|.. ..+++...+ ++.+|.+.......
T Consensus 151 ~~nGTIsiRNk~gEek-------------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 151 MFNGTISIRNKNGEEK-------------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred ccCceEEeecCCCCcc-------------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence 9999999874322111 1123345568899999999964 356666633 56777665421100
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
.....|. -.++.+ -++|.|+..|+.|+.+++|-. .|-
T Consensus 218 ----------------------------------~r~L~Fd-------P~CisY-f~NGEy~LiGGsdk~L~~fTR-~Gv 254 (1081)
T KOG1538|consen 218 ----------------------------------DRALNFD-------PCCISY-FTNGEYILLGGSDKQLSLFTR-DGV 254 (1081)
T ss_pred ----------------------------------cccCCCC-------chhhee-ccCCcEEEEccCCCceEEEee-cCe
Confidence 0000111 356777 799999999999999999975 777
Q ss_pred eeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 377 LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 377 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
.+.++......|+.++..|++++++.|+.||+|-.|++......
T Consensus 255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH 298 (1081)
T KOG1538|consen 255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVH 298 (1081)
T ss_pred EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhh
Confidence 77888777789999999999999999999999999999765443
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-22 Score=172.26 Aligned_cols=287 Identities=12% Similarity=0.137 Sum_probs=203.4
Q ss_pred EEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCcC----cceEEEEecCC-----CCCceEEeecCCCcEEEE
Q 011160 66 TVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHN----DNVFQAKIMPF-----TDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~-----~~~~~l~~~~~dg~v~iw 133 (492)
.+..-|..++|+++-.. ..+.+|=.+..+. .++..|. ....|++|... ..|+++|.|+.+..|.||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~--nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE--NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCc--ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 45566766667666432 2344443333331 1112232 23346666532 247899999999999999
Q ss_pred ecccCCeeee-------------------EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCC
Q 011160 134 QILERGGVET-------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (492)
Q Consensus 134 ~~~~~~~~~~-------------------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (492)
|+.-...+.. ..-.+|++.|..++|+..-.++|++|+.|.+|++||+.++++...+..
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~--- 284 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH--- 284 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh---
Confidence 9864332111 012368899999999988888999999999999999999999888874
Q ss_pred CCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC
Q 011160 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (492)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (492)
+...|.++.|+|..+..|++|+.|++|.+.|.|..... ...-...+.|-.++|.|...
T Consensus 285 -------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---------------~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 285 -------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---------------GKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred -------cCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---------------CceEEeccceEEEEecCCCc
Confidence 56689999999998999999999999999999953211 11112357899999999764
Q ss_pred e-eEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeec
Q 011160 275 L-LVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (492)
Q Consensus 275 ~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 352 (492)
. +++++ +|.++-+|++.. .+++.+++.|... |.++++..
T Consensus 343 ~~f~~~tddG~v~~~D~R~~-------------------------------------~~~vwt~~AHd~~--ISgl~~n~ 383 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNP-------------------------------------GKPVWTLKAHDDE--ISGLSVNI 383 (463)
T ss_pred eeEEEecCCceEEeeecCCC-------------------------------------CCceeEEEeccCC--cceEEecC
Confidence 3 33333 778999999874 4678899999997 89999833
Q ss_pred CCCcEEEEeeccCeEEEEecCCCeeeEEEecC---CceeEEEeecCCCC-eEEEeeCCCCEEEeccCCCCC
Q 011160 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD---RHVVNCIEPHPHST-VLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 353 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 419 (492)
..-.++++++.|+.|++|++..-.... ...| -+...|+++.|+-. +||.||..+.++|||+.+...
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~~-v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPKS-VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCcc-cccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 344689999999999999986443321 1122 23466777778765 577777778899999987543
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.9e-21 Score=176.27 Aligned_cols=369 Identities=16% Similarity=0.210 Sum_probs=245.5
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCC---CEEEEec
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGS 80 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~ 80 (492)
+.|++|++.++... +..|.||...||+++ ..+.+|..+++.+.+.|.. .++.+++
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i---------------------~~l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECI---------------------TSLEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhh---------------------hhcccccCccceeeecCCCccceEEEEEe
Confidence 46899999988887 458999999999988 6799999999999998754 4778999
Q ss_pred CCCeEEEEECCCCceeeee-------------------------------------------------------------
Q 011160 81 DDRRVILWDWKTERVKLSF------------------------------------------------------------- 99 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~------------------------------------------------------------- 99 (492)
.+|.|++||...+..+.++
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 9999999998764322110
Q ss_pred -----------------------------------------ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc-
Q 011160 100 -----------------------------------------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE- 137 (492)
Q Consensus 100 -----------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~- 137 (492)
...|.-.+++.+++| +++++++|..||.|.+|.--.
T Consensus 160 ~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 160 HQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred hcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEecccc
Confidence 012344568899999 999999999999999997443
Q ss_pred -CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 138 -RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 138 -~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
........+.-|...|++++|+++|. +|++|+..+.+.+|.+.+++....-+ -.++|..+.++|+ +
T Consensus 238 ~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~kqfLPR-----------Lgs~I~~i~vS~d-s 304 (792)
T KOG1963|consen 238 SDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGKKQFLPR-----------LGSPILHIVVSPD-S 304 (792)
T ss_pred ccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCCcccccc-----------cCCeeEEEEEcCC-C
Confidence 33333345777889999999999995 78999999999999999998432222 4457999999998 6
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeecCCcEEEEecCCCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDEFIYLFTQDMGLGP 295 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~i~~~d~~~~~~~ 295 (492)
.+.+....|..|.+....+........--.+ +..........-.+.+.++|.. ..+..+..+.|++||+-+....
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~----~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKP----PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred CeEEEEecCceEEEEeccchhhhhhccCccC----CCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 7888888899999988765543222111000 0011122234556788899944 4445555789999999887655
Q ss_pred CCCCCCCC-----C----ccccccccCCCCCCCCCCCCC-------------------CCccc--cCCceeeccccceee
Q 011160 296 NPPPSSPV-----S----TRSEASEMGSDHTSAASPSTA-------------------NTDVR--IAPQVYKGHRNCVTV 345 (492)
Q Consensus 296 ~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~--~~~~~~~~~~~~~~v 345 (492)
..+..... . ....+...+..+.-++..... +..+. -.......|....
T Consensus 381 ~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~-- 458 (792)
T KOG1963|consen 381 YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF-- 458 (792)
T ss_pred eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee--
Confidence 44331111 0 000111111112211111110 00000 0112223555553
Q ss_pred eeEEeecCCCc-EEEEeeccCeEEEEecCCC----------eeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 346 KGVNFFGPKCE-YVVSGSDCGRIFIWKKKGG----------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 346 ~~~~~~s~~g~-~l~sg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
...++.++... ..++++.||.++||-+... .+...=.-|..++++++|+.||..| +.+.|++|.+||.
T Consensus 459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDY 537 (792)
T ss_pred EEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecC
Confidence 33333344444 8899999999999988322 2222212367789999999999655 4667999999999
Q ss_pred CC
Q 011160 415 NA 416 (492)
Q Consensus 415 ~~ 416 (492)
.+
T Consensus 538 ~~ 539 (792)
T KOG1963|consen 538 DT 539 (792)
T ss_pred CC
Confidence 88
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.8e-23 Score=181.31 Aligned_cols=306 Identities=15% Similarity=0.219 Sum_probs=210.8
Q ss_pred ceEeeccCcceEEEE--eeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 11 KRARTSVDKALVDVW--LRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
+..++...+...++| ++. +..+...+..+...-.....++.+..++..|...|+.++|.|....|++++.||+|++|
T Consensus 243 ~~~~g~d~~l~~~l~~~tla-~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W 321 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLA-GLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW 321 (577)
T ss_pred CccccCchHHHHhhcccchh-cccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence 346677778888888 544 22221111111111111344456666888999999999999999999999999999999
Q ss_pred ECCC--------CceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC--------eeeeEEeecCCCc
Q 011160 89 DWKT--------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG--------GVETKLLGKHQGR 152 (492)
Q Consensus 89 d~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--------~~~~~~~~~~~~~ 152 (492)
+++. -+++.+| .+|.++|.|+++.+ ++..+++|+.||+|+.|++.... .+....+.+|.+.
T Consensus 322 nLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~--n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda 398 (577)
T KOG0642|consen 322 NLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPS--NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA 398 (577)
T ss_pred hhcccCCccccceeeeEEE-ecccCceEEEEecC--CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc
Confidence 9932 2346666 79999999999999 99999999999999999775221 1233457899999
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
|+.+++++.. ..|++++.||++++|+...... ..+.... .......+.+-.....+.++ +.....++
T Consensus 399 vw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~--------e~g~Plsvd~~ss~~a~~~~---s~~~~~~~ 465 (577)
T KOG0642|consen 399 VWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPK--------EHGYPLSVDRTSSRPAHSLA---SFRFGYTS 465 (577)
T ss_pred eeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCcc--------ccCCcceEeeccchhHhhhh---hccccccc
Confidence 9999999987 5689999999999999876655 2222211 11223445554331122222 22333333
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCcccccccc
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (492)
+...+... .+ .++.-..
T Consensus 466 ~~~~ev~s-------------------------~~-----------------~~~~s~~--------------------- 482 (577)
T KOG0642|consen 466 IDDMEVVS-------------------------DL-----------------LIFESSA--------------------- 482 (577)
T ss_pred chhhhhhh-------------------------he-----------------eeccccC---------------------
Confidence 33222110 01 1111000
Q ss_pred CCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEe
Q 011160 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE 392 (492)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 392 (492)
..+......+..+.. .|.+.+.+++..|+.|+++|..+++++.....|...+++++
T Consensus 483 -----------------------~~~~~~~~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 483 -----------------------SPGPRRYPQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA 538 (577)
T ss_pred -----------------------CCcccccCccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceeccee
Confidence 000000011455665 88999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 393 PHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 393 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+.|+|.+|++++.|+.+++|++....+.
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecCCCceEEeecCCceeehhhccchhee
Confidence 9999999999999999999999776543
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.8e-21 Score=156.05 Aligned_cols=286 Identities=13% Similarity=0.123 Sum_probs=200.6
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-CccceEEEEEEc-------CCC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFN-------TDG 73 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s-------~~~ 73 (492)
....++|||.-|++-+.|..+++|++-..-.. ...+....++....++ .....|...+|- |+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys---------~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYS---------KKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcc---------cCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 34678999999999999999999998621111 1111222222222222 124567777774 677
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecc-CcCc---ceEEEEecCCCCCceEEeecCCCcEEEEeccc-CCeeeeEEe--
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHS-GHND---NVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLL-- 146 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~---~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~-- 146 (492)
.++|+.+.+.-|++||.-+|+....+.. .|.. ...+++|+| ||.+|++|- ...|+++|+.. +..-.....
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 8999999999999999999998777621 2333 456899999 999998765 57899999943 332211111
Q ss_pred ---ecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 147 ---GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 147 ---~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
.+..+.|.+++|+|..+.+++.++....+-||.-..+.++..+.. +.+.|+.++|+++ |+.|++|+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----------h~gGvThL~~~ed-Gn~lfsGa 269 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----------HGGGVTHLQWCED-GNKLFSGA 269 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----------cCCCeeeEEeccC-cCeecccc
Confidence 133677899999999878999999999999998888887777653 6778999999999 56777766
Q ss_pred -CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcc---cceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCC
Q 011160 224 -SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ---VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (492)
Q Consensus 224 -~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 298 (492)
.+..|..||+|..+.. ...+..|. ..-.-....|++++|++|+ +|.|++||++..
T Consensus 270 Rk~dkIl~WDiR~~~~p--------------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~------ 329 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDP--------------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL------ 329 (406)
T ss_pred cCCCeEEEEeehhccch--------------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC------
Confidence 5789999999976421 11111111 1222345568899999996 889999999873
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc
Q 011160 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (492)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d 364 (492)
...+..+..+... ++.+++ +|--.++|+++..
T Consensus 330 -------------------------------gn~~sv~~~~sd~--vNgvsl-nP~mpilatssGq 361 (406)
T KOG2919|consen 330 -------------------------------GNEVSVTGNYSDT--VNGVSL-NPIMPILATSSGQ 361 (406)
T ss_pred -------------------------------CCccccccccccc--ccceec-CcccceeeeccCc
Confidence 2233444555554 888888 8988888887654
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.2e-23 Score=193.83 Aligned_cols=251 Identities=21% Similarity=0.289 Sum_probs=194.9
Q ss_pred cceEEEEEEcCCCCE----EEEecCCCeEEEEECCC---Cc---eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 61 RGCVNTVSFNTDGDI----LISGSDDRRVILWDWKT---ER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~----l~s~~~d~~i~iwd~~~---~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
..+.+.|+|.+.|.. ||.|..||.|.+||... +. .+.+. ..|.+.|..+.|+++ .+++|++|+.+|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~-q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPF-QGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeecccc-CCceeeccCCCCcE
Confidence 456789999987654 89999999999999765 22 22333 679999999999994 45699999999999
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
.|||+...+......-......|.+++|+..-.++|++++.+|.+.|||++..+.+-.+.... ....+..++
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~--------~~~~~S~l~ 213 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP--------GRMHCSVLA 213 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC--------Cccceeeee
Confidence 999998765443321223457899999999877899999999999999999987776655332 223578999
Q ss_pred EcCCCCceEEEecCCC---eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeec-CCcEE
Q 011160 211 IDPRNANLFAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIY 285 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~i~ 285 (492)
|+|++...+++++.|. .|.+||+|.-. .+.....+|...|.++.|++.+ .+|++++ |+.|.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~as--------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFAS--------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccC--------------CchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 9999888888887664 58999998754 2455667899999999999976 7777777 77899
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEeecc
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDC 364 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~~d 364 (492)
+|+.++++. +..+....+. +..+.| .|..- .+++++.|
T Consensus 280 ~wN~~tgEv--------------------------------------l~~~p~~~nW--~fdv~w-~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 280 CWNPNTGEV--------------------------------------LGELPAQGNW--CFDVQW-CPRNPSVMAAASFD 318 (1049)
T ss_pred EecCCCceE--------------------------------------eeecCCCCcc--eeeeee-cCCCcchhhhheec
Confidence 999998533 3334443343 788888 77655 88899999
Q ss_pred CeEEEEecCCCe
Q 011160 365 GRIFIWKKKGGE 376 (492)
Q Consensus 365 g~i~iwd~~~~~ 376 (492)
|.|.|+.+..+.
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999986654
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=3.4e-21 Score=170.73 Aligned_cols=167 Identities=15% Similarity=0.198 Sum_probs=129.4
Q ss_pred ecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-CCeeEeec-
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN- 280 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~- 280 (492)
...|+.+.|.|-+...|++++.||.|++|.+..+.+. .....+...+..|...|+++.|+|- ...|++++
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------cccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 4568888999987889999999999999999877542 2233455667778899999999994 45777777
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE
Q 011160 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (492)
Q Consensus 281 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s 360 (492)
+-+|++||+.+ ......+.+|... |.+++| ||+|+.+|+
T Consensus 699 d~Ti~lWDl~~--------------------------------------~~~~~~l~gHtdq--If~~AW-SpdGr~~At 737 (1012)
T KOG1445|consen 699 DSTIELWDLAN--------------------------------------AKLYSRLVGHTDQ--IFGIAW-SPDGRRIAT 737 (1012)
T ss_pred cceeeeeehhh--------------------------------------hhhhheeccCcCc--eeEEEE-CCCCcceee
Confidence 55899999988 4566778999998 999999 999999999
Q ss_pred eeccCeEEEEecCCCee-eEEEecCCc-eeEEEeecCCCCeEEEeeCCC----CEEEeccCCCC
Q 011160 361 GSDCGRIFIWKKKGGEL-IRVIEADRH-VVNCIEPHPHSTVLASSGIES----DIKILTPNAAD 418 (492)
Q Consensus 361 g~~dg~i~iwd~~~~~~-~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg----~i~iw~~~~~~ 418 (492)
.+.||+|++|+-.+++. +++-++..+ .-..+.|.-||++++..|.|+ .|.+|+..+-.
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 99999999999877643 333222221 234566777999998888764 57778776543
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.7e-21 Score=160.17 Aligned_cols=321 Identities=15% Similarity=0.156 Sum_probs=216.1
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeee-eeeEeec-CccceEEEEEEcCCCCEEEEe
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKLD-KHRGCVNTVSFNTDGDILISG 79 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~h~~~v~~~~~s~~~~~l~s~ 79 (492)
+-+.|+++++.||+|+.|..++||+++.-... +. ++++... .|...|.|++|....++|.+|
T Consensus 60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred ceeeeccCCeEEeecCCcceeeeechHHHHhh----------------cCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 44678899999999999999999999832211 11 2223222 356899999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC-eeeeEEeecCCCceEEEE
Q 011160 80 SDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~i~ 157 (492)
+.+++|.+.|+++.+.+..+. ....+.|+.+..+| ..+.|++.+.+|.|.+||++... ......+.........+.
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 999999999999988776662 11234899999999 78899999999999999998765 333333444556788999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCCccc-eeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
|+|..+.+|++.+..+-+-+||++...... ......... . ....-..+.|+|. |+.|++--....-.+||+-..
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~--~--~~~~~M~~~~~~~-G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP--Q--ENTEWMGSLWSPS-GNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred ecCCCceeEEeccccCCCCceeeccccchHHhhhccccCc--c--cchhhhheeeCCC-CCeehhhhccCCCEEeeeecc
Confidence 999999999999999999999998765321 111100000 0 1223456789997 667766655555667887664
Q ss_pred cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCCCCCCCCCCCCccccccccCCC
Q 011160 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (492)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (492)
++-- +.+......+ .....+.+++|..+-. +++|++. .|++|.+.......-+..-.. +
T Consensus 277 R~~V-~k~D~N~~GY-------~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~-----------~ 336 (609)
T KOG4227|consen 277 RCFV-LKSDHNPNGY-------CNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGH-----------D 336 (609)
T ss_pred ccee-EeccCCCCcc-------eeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCc-----------c
Confidence 3210 0000000000 0124567777766544 8888877 799999865322111110000 0
Q ss_pred CCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
.. -.............++||... ++.+.| +|...+|++.+-...++||.-
T Consensus 337 ~~----~~~~~~~i~~~~~VLrGHRSv--~NQVRF-~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 337 EE----EMPSEIFIEKELTVLRGHRSV--PNQVRF-SQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hh----hCchhheecceeEEEeccccc--ccceee-cCCcceEeccchhhheecccc
Confidence 00 000011224556788999987 889998 999999999999999999974
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.2e-21 Score=170.60 Aligned_cols=253 Identities=12% Similarity=0.132 Sum_probs=194.5
Q ss_pred eccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEE
Q 011160 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (492)
Q Consensus 99 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iw 178 (492)
++.+|++.|.++...| .|.+|++|+.||+|+||.+.++.++....+. ..|.||+|+|.+...++++.....+.|.
T Consensus 395 vyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3589999999999999 9999999999999999999999999875544 5899999999887666666666667777
Q ss_pred eCCCCCccce------eecC---CC-------------CCCC-----cceeecceEEEEEcCCCCceEEEecC---CCeE
Q 011160 179 DLRTGAATEL------FTCR---PI-------------DDRR-----NYMTVVNLNAIAIDPRNANLFAVAGS---DEYT 228 (492)
Q Consensus 179 d~~~~~~~~~------~~~~---~~-------------~~~~-----~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~v 228 (492)
+..-|..+.. +... .. .... ...+...|..+.|+.. |.+|++... ...|
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSV 548 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceE
Confidence 6554422111 0000 00 0000 0125567899999998 788888664 3568
Q ss_pred EEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
.|+++...+.. ..+....+.|.++.|+|...+|++++...|++||+..+
T Consensus 549 liHQLSK~~sQ---------------~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---------------- 597 (733)
T KOG0650|consen 549 LIHQLSKRKSQ---------------SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---------------- 597 (733)
T ss_pred EEEeccccccc---------------CchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH----------------
Confidence 89998776522 11222356799999999999999999999999999762
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC-eeeEEEecCCce
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHV 387 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~ 387 (492)
..++.+..... .|.+++. +|.|.-|+.|+.|+.+..+|+.-. ++.++++.|...
T Consensus 598 ----------------------elvKkL~tg~k--wiS~msi-hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a 652 (733)
T KOG0650|consen 598 ----------------------ELVKKLLTGSK--WISSMSI-HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA 652 (733)
T ss_pred ----------------------HHHHHHhcCCe--eeeeeee-cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh
Confidence 33444433333 3788888 999999999999999999999754 577889999999
Q ss_pred eEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 388 VNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 388 v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
+++++|++.-.++++|+.||++.|+-
T Consensus 653 vr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 653 VRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred hhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999999999999999999873
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=6.9e-19 Score=167.04 Aligned_cols=316 Identities=26% Similarity=0.430 Sum_probs=234.8
Q ss_pred CCCCc-eEeecc-CcceEEEEeecc-CcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC-C
Q 011160 7 NNNNK-RARTSV-DKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-D 82 (492)
Q Consensus 7 ~~~~~-~l~t~~-~dg~v~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d 82 (492)
.+++. .++..+ .|+.+++|+... +... ..+..|...|..++|+|++.++++++. +
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 177 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLI---------------------RTLEGHSESVTSLAFSPDGKLLASGSSLD 177 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEE---------------------EEEecCcccEEEEEECCCCCEEEecCCCC
Confidence 45565 555544 499999999986 3333 678899999999999999999999885 9
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCc-eEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
+.+++|++..+..+..+ .+|...|.+++|+| ++. .+++++.|+.|++|+...+..... .+..|.... ...|+|+
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPD 252 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCC
Confidence 99999999987776666 67999999999998 887 555558999999998875544441 377777765 4489999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
+ .++++++.++.+++|+++.... ...+. + +...+.++.|+|+ +..+++++.|+.+.+|+..+.....
T Consensus 253 ~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------~--~~~~v~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 253 G-SLLASGSSDGTIRLWDLRSSSSLLRTLS--------G--HSSSVLSVAFSPD-GKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred C-CEEEEecCCCcEEEeeecCCCcEEEEEe--------c--CCccEEEEEECCC-CCEEEEeeCCCcEEEEEcCCCceEE
Confidence 8 6788999999999999987765 22221 1 3557899999996 5677778888889999887765322
Q ss_pred CCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee-c-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
... ...|...+..+.|.+++..++.+ . ++.+.+|+.....
T Consensus 321 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------------- 362 (466)
T COG2319 321 SLT-------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK------------------------- 362 (466)
T ss_pred Eee-------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-------------------------
Confidence 110 12344578889984332455555 3 5578889987641
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE-eeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCC
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 397 (492)
.......... +..+.+ .+ ...++. +..++.+.+|+............+...+....+++++
T Consensus 363 -------------~~~~~~~~~~---~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (466)
T COG2319 363 -------------PLKTLEGHSN---VLSVSF-SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424 (466)
T ss_pred -------------eeEEecCCce---EEEEEE-CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCC
Confidence 1111111111 567777 66 444444 7889999999999888877776554679999999999
Q ss_pred CeEEEeeCCCCEEEeccCC
Q 011160 398 TVLASSGIESDIKILTPNA 416 (492)
Q Consensus 398 ~~l~s~~~dg~i~iw~~~~ 416 (492)
..+++++.++.+++|++..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999988
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=5e-19 Score=168.03 Aligned_cols=324 Identities=23% Similarity=0.385 Sum_probs=235.4
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCc-chhhhhhhcccccccceeeeeeeEeecCcc-ceEEEEEE-cCCCC-EEEEe
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQ-LSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSF-NTDGD-ILISG 79 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-s~~~~-~l~s~ 79 (492)
+.+.+.+..++.++.|+.+.+|+...+. .. ..+.++. ..+..+.+ ++++. +++..
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLI---------------------KSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCceeE---------------------EEEeccCCCceeeEEEECCCcceEEecc
Confidence 4567888889999999999999998664 22 3444433 36777777 88887 55554
Q ss_pred cC-CCeEEEEECCC-CceeeeeccCcCcceEEEEecCCCCCceEEeecC-CCcEEEEecccCCeeeeEEeecCCCceEEE
Q 011160 80 SD-DRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 80 ~~-d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i 156 (492)
+. |+.+.+|+... ......+ ..|...|..++|+| ++..+++++. ++.+++|++........ +.+|...|.++
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~ 204 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLST--LAGHTDPVSSL 204 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEe--eccCCCceEEE
Confidence 44 99999999987 5555555 78999999999999 8888888885 99999999987555544 66799999999
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCCccc-eeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
+|+|+++.++++++.|+.|++||...+.... .+.. +.... ...|+|+ +.++++++.++.+++|+++.
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~----------~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG----------HSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC----------CCcce-eEeECCC-CCEEEEecCCCcEEEeeecC
Confidence 9999985355555999999999888666555 2322 22222 2289998 47888999999999999987
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
.... .... ..|...+.++.|+|++..+++++ ++.+.+|+..+...
T Consensus 273 ~~~~-------------~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------------- 318 (466)
T COG2319 273 SSSL-------------LRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-------------------- 318 (466)
T ss_pred CCcE-------------EEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce--------------------
Confidence 5420 0111 34578899999999888777766 55699998776321
Q ss_pred CCCCCCCCCCCCCccccCCce--eeccccceeeeeEEeecCCCcEEEEe-eccCeEEEEecCCCeeeEEEecCCceeEEE
Q 011160 315 DHTSAASPSTANTDVRIAPQV--YKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCI 391 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~s~~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 391 (492)
... ...|... +..+.+ .+++..++.+ ..|+.+++|++...........+. .+..+
T Consensus 319 ------------------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 376 (466)
T COG2319 319 ------------------LSSLTLKGHEGP--VSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV 376 (466)
T ss_pred ------------------EEEeeecccCCc--eEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence 111 2355543 778887 6664555555 678999999998877333333332 28899
Q ss_pred eecCCCCeEEE-eeCCCCEEEeccCCCCCCcc
Q 011160 392 EPHPHSTVLAS-SGIESDIKILTPNAADRATL 422 (492)
Q Consensus 392 ~~s~~~~~l~s-~~~dg~i~iw~~~~~~~~~~ 422 (492)
.+++ ...++. +..++.+.+|+.........
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRN 407 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEecccCeeeee
Confidence 9998 544444 68899999999988766543
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=184.04 Aligned_cols=292 Identities=20% Similarity=0.289 Sum_probs=219.3
Q ss_pred eeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 48 VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 48 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
+.+.+.++.|.+|...|+|+.|...|.++++|+.|..++||..+++.++... .||.+.|+.++.+. +..++++++.|
T Consensus 177 vqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~--~n~~iaaaS~D 253 (1113)
T KOG0644|consen 177 VQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSS--NNTMIAAASND 253 (1113)
T ss_pred HHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccch--hhhhhhhcccC
Confidence 3344666788899999999999999999999999999999999999998888 89999999999998 88899999999
Q ss_pred CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
..|++|.+..+..+.. +.+|++.|++|+|+|- .+.+.||++++||.+-...+.. ..+. ......-+.
T Consensus 254 ~vIrvWrl~~~~pvsv--LrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~--prp~----~~~~~~~~~ 320 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSV--LRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYV--PRPL----KFTEKDLVD 320 (1113)
T ss_pred ceEEEEecCCCchHHH--HhccccceeeeccCcc-----ccCCCCCceEeccccccccccC--CCCC----Cccccccee
Confidence 9999999999888776 8999999999999994 3778999999999882111111 0000 000223456
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec-CCcEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIY 285 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~ 285 (492)
++.|... +..+++++.++.-..|.+..... +...+.-+.++.+.. +.+++- +-.+.
T Consensus 321 s~~~~~~-~~~f~Tgs~d~ea~n~e~~~l~~---------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 321 SILFENN-GDRFLTGSRDGEARNHEFEQLAW---------------------RSNLLIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred eeecccc-ccccccccCCcccccchhhHhhh---------------------hccceEEEeccccccccceeeeeeeEee
Confidence 6667665 67899999999988887754321 122222233333322 333333 33688
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEeecc
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDC 364 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~~d 364 (492)
+|++.++ .....+.+|... +..+.+ +|-.. ...+++.|
T Consensus 379 vwnl~~g--------------------------------------~l~H~l~ghsd~--~yvLd~-Hpfn~ri~msag~d 417 (1113)
T KOG0644|consen 379 VWNLYTG--------------------------------------QLLHNLMGHSDE--VYVLDV-HPFNPRIAMSAGYD 417 (1113)
T ss_pred eeecccc--------------------------------------hhhhhhcccccc--eeeeee-cCCCcHhhhhccCC
Confidence 9998874 456677788877 555666 77554 44578999
Q ss_pred CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
|.+.|||+..|.+++.+.-..+.+..-.||+||..++....-|.++|.....++
T Consensus 418 gst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 418 GSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 999999999998886654334567778999999999988888999998776543
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.5e-21 Score=170.57 Aligned_cols=266 Identities=18% Similarity=0.236 Sum_probs=177.6
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
...|+|-...|++++.||++++|+++. .. ......++++.+|.+|.++|.|+++.+.+..+++|+.|
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk-~~------------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQK-AK------------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhcc-cC------------CccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 346788899999999999999999953 11 11233567789999999999999999999999999999
Q ss_pred CeEEEEECCCC---------ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCce
Q 011160 83 RRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (492)
Q Consensus 83 ~~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v 153 (492)
|+|+.|++... ..+...+.||+..|+.+++++ ....|++++.||++++|+...... .........+..
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 99999966421 123333479999999999999 888899999999999999876554 221111122334
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEec
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~ 233 (492)
.++.+....+...++...-+.-.+++++.......+... ...+......++.+.++|. ..+.+++..|+.|+++|.
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~---~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS---ASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFDN 518 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeecccc---CCCcccccCccceEEecCC-CCeeEecccCCceecccc
Confidence 556665443223333333333334444433333332221 1111112234566666665 456666666666666666
Q ss_pred ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccC
Q 011160 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (492)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (492)
.+++.
T Consensus 519 ~~~~~--------------------------------------------------------------------------- 523 (577)
T KOG0642|consen 519 KTGKI--------------------------------------------------------------------------- 523 (577)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 55432
Q ss_pred CCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCC
Q 011160 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (492)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 385 (492)
+.....|... ++++++ .|+|-+|++|+.|+.+++|.+....++.....|.
T Consensus 524 -------------------l~s~~a~~~s--vtslai-~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 524 -------------------LHSMVAHKDS--VTSLAI-DPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred -------------------chheeeccce--ecceee-cCCCceEEeecCCceeehhhccchheeecccccc
Confidence 2223333333 788888 9999999999999999999988777776666554
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.4e-20 Score=172.91 Aligned_cols=298 Identities=20% Similarity=0.256 Sum_probs=210.8
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccC--cCcceEEEEecCCCCCceEEeecCCCcEEEEecccC
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 138 (492)
.++-..+.|+|-...++++...-.|+|||.+.++....|..+ ....|+.+.+....|..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 345667889998888999987789999999999987777332 234788998876446678999999999999975433
Q ss_pred C--ee-eeEEe---ec----CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 139 G--GV-ETKLL---GK----HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 139 ~--~~-~~~~~---~~----~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
. .. ....+ .+ ..+.-.-+.|..... .|+++|.-..|+|||.........+... ....+++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~---------s~t~vTa 1213 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYG---------SSTLVTA 1213 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccC---------CCcccee
Confidence 2 11 11111 11 111113456776664 4566666789999999988776655432 3345777
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccc--eEEEEEcCCCCe-eEeec-CCcE
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG--ITGLAFSDQSEL-LVSYN-DEFI 284 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~-l~~~~-~~~i 284 (492)
+.-+-.+++.+++|..||.|++||.|..... +.......|+.. |..+.+.++|-- |++++ +|.|
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPD------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCcc------------ccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 7766666789999999999999999875421 233344455555 999999997743 77777 8899
Q ss_pred EEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccce-eeeeEEeecCCCcEEEEeec
Q 011160 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSGSD 363 (492)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~s~~g~~l~sg~~ 363 (492)
++||++..... .......|.... ..+++.. +++...+|+|+.
T Consensus 1282 ~~~DlR~~~~e------------------------------------~~~~iv~~~~yGs~lTal~V-H~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1282 QLLDLRMSSKE------------------------------------TFLTIVAHWEYGSALTALTV-HEHAPIIASGSA 1324 (1387)
T ss_pred EEEecccCccc------------------------------------ccceeeeccccCccceeeee-ccCCCeeeecCc
Confidence 99999874111 111222222111 2677777 999999999998
Q ss_pred cCeEEEEecCCCeeeEEEecCC-------ceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 364 CGRIFIWKKKGGELIRVIEADR-------HVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
+.|+||++ .|+.+..++.+. +.+.+++|+|-.-+||.|+.|.+|.||..+.+..
T Consensus 1325 -q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1325 -QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred -ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 99999998 666665554332 4689999999999999999999999999877543
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=1.2e-18 Score=157.44 Aligned_cols=288 Identities=11% Similarity=0.152 Sum_probs=176.7
Q ss_pred eEeeccCcceEEEEeecc-CcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec-CCCeEEEEE
Q 011160 12 RARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS-DDRRVILWD 89 (492)
Q Consensus 12 ~l~t~~~dg~v~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd 89 (492)
.+++...++.|++|++.+ |++. ..+.+. +.+....++++|++++|++++ .++.|.+|+
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~-------------------~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~ 63 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALT-------------------LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYR 63 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCcee-------------------eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEE
Confidence 355557799999999964 3322 224443 335567889999999887654 578899999
Q ss_pred CC-CCce--eeeeccCcCcceEEEEecCCCCCceEEeecC-CCcEEEEecccCCeee-eEEeecCCCceEEEEEcCCCCc
Q 011160 90 WK-TERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 90 ~~-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
+. ++.. .... ........++|+| ++++|++++. ++.|.+|++.+..... ......+.....+++++|++..
T Consensus 64 ~~~~g~l~~~~~~--~~~~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 64 IADDGALTFAAES--PLPGSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT 139 (330)
T ss_pred ECCCCceEEeeee--cCCCCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE
Confidence 86 3332 1222 2333567899999 9998887764 7899999996432211 1111122244677899999965
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC-CCeEEEEecccc--cccCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKY--KWDGS 241 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~i~d~~~~--~~~~~ 241 (492)
++++...++.|.+||+.+...+........... .......++|+|+ +++++++.. ++.|.+|++... +....
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~----~g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV----EGAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecC----CCCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 556677789999999987432211000000000 1123567899998 567666654 899999999742 21100
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
..+. . .+... .+......+.++|++++|+++. ++.|.+|++......
T Consensus 215 ~~~~----~-~p~~~--~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~------------------------ 263 (330)
T PRK11028 215 QTLD----M-MPADF--SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV------------------------ 263 (330)
T ss_pred EEEe----c-CCCcC--CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe------------------------
Confidence 0000 0 00000 0112345689999999998876 457999998652100
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec-cCeEEEEecC
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK 373 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-dg~i~iwd~~ 373 (492)
........... ....+.+ +|+|++|+++.. +++|.+|++.
T Consensus 264 ----------~~~~~~~~~~~---~p~~~~~-~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 264 ----------LSFEGHQPTET---QPRGFNI-DHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ----------EEEeEEEeccc---cCCceEE-CCCCCEEEEEEccCCcEEEEEEc
Confidence 01111111111 1356777 999999998765 8899999874
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=6.8e-19 Score=159.01 Aligned_cols=281 Identities=12% Similarity=0.151 Sum_probs=173.3
Q ss_pred EEecCCCeEEEEECCC-Cc--eeeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEEEecccCCee-eeEEeecCCC
Q 011160 77 ISGSDDRRVILWDWKT-ER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGV-ETKLLGKHQG 151 (492)
Q Consensus 77 ~s~~~d~~i~iwd~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~-~~~~~~~~~~ 151 (492)
++...++.|.+|++.+ ++ .+..+ .+.+....++++| ++++|++++ .++.|.+|++...... ..... ....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~ 80 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPG 80 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCC
Confidence 4446789999999964 33 23333 2345678899999 999887664 5788999999732222 11111 1234
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc-ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i 230 (492)
....++++|+++.++++...++.|.+|++.+.... ....... .......++++|++..++++...++.|.+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------GLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------CCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 56789999999644444445899999999743221 1111100 11235678899985444456667799999
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
||+.+........ .. ..... .......++|+|+|+++++++ ++.|.+|+++.....
T Consensus 153 ~d~~~~g~l~~~~---~~----~~~~~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~------------- 210 (330)
T PRK11028 153 FTLSDDGHLVAQE---PA----EVTTV--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE------------- 210 (330)
T ss_pred EEECCCCcccccC---CC----ceecC--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-------------
Confidence 9997633211000 00 00001 123456799999999988776 568999999742100
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeecc----ccceeeeeEEeecCCCcEEEEeec-cCeEEEEecCCCe----eeE
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGH----RNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGGE----LIR 379 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~s~~g~~l~sg~~-dg~i~iwd~~~~~----~~~ 379 (492)
......+... ........+.+ +|+|++++++.. ++.|.+|++.... .+.
T Consensus 211 ---------------------~~~~~~~~~~p~~~~~~~~~~~i~~-~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 211 ---------------------IECVQTLDMMPADFSDTRWAADIHI-TPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred ---------------------EEEEEEEecCCCcCCCCccceeEEE-CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 0001111100 00001345777 999999998854 6899999986433 222
Q ss_pred EEecCCceeEEEeecCCCCeEEEeeC-CCCEEEeccC
Q 011160 380 VIEADRHVVNCIEPHPHSTVLASSGI-ESDIKILTPN 415 (492)
Q Consensus 380 ~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 415 (492)
.+... .....++++|+|++|++++. +++|.+|+++
T Consensus 269 ~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 269 HQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 22221 24568999999999887765 8999999875
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.6e-19 Score=145.13 Aligned_cols=291 Identities=14% Similarity=0.183 Sum_probs=203.1
Q ss_pred eEeecCccceEEEEEEcC--C-CCEEEEecC----CCeEEEEEC--CCCceeeeeccCcCcceEEEEecCCCC---CceE
Q 011160 54 YAKLDKHRGCVNTVSFNT--D-GDILISGSD----DRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTD---DRSI 121 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~--~-~~~l~s~~~----d~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l 121 (492)
+..+.. .-++.++.|+. + ..+||.|+. .+.|.|-.+ .+++.+..-...|.-+++.+.|.|... .++|
T Consensus 38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 344443 34678899983 2 457888874 456666554 345544433347889999999999321 1356
Q ss_pred EeecCCCcEEEEecccCCe--eeeEEe-----ecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc--c-ceeec
Q 011160 122 VTCAADGQVRHAQILERGG--VETKLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--T-ELFTC 191 (492)
Q Consensus 122 ~~~~~dg~v~iw~~~~~~~--~~~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~-~~~~~ 191 (492)
|+++ ..+|+|.+...+. .....+ ..+..++++..|+.-.++++.+++-|-+..|||++++.. + ..+-.
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 6554 3799999974221 111111 235678999999998889999999999999999999733 1 11111
Q ss_pred CCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC
Q 011160 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (492)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 271 (492)
|...|..++|...+...|++.+.||.||+||+|..+.... .++ ......+...++|++
T Consensus 195 ----------HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE-----------~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 195 ----------HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYE-----------DPSPSTPLLRLSWNK 252 (364)
T ss_pred ----------cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-Eec-----------CCCCCCcceeeccCc
Confidence 6778999999987678999999999999999998653211 010 111246788899998
Q ss_pred CC-CeeEeecCC--cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeE
Q 011160 272 QS-ELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348 (492)
Q Consensus 272 ~~-~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 348 (492)
+. +++|+...+ .|.+.|++.. ...+..+++|... |+++
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P-------------------------------------~tpva~L~~H~a~--VNgI 293 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVP-------------------------------------CTPVARLRNHQAS--VNGI 293 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCC-------------------------------------CcceehhhcCccc--ccce
Confidence 64 677776633 6999999864 4567889999998 9999
Q ss_pred EeecCC-CcEEEEeeccCeEEEEecCCCee------eEEEecCCceeEEEeecCC-CCeEEEeeCCCCEEE
Q 011160 349 NFFGPK-CEYVVSGSDCGRIFIWKKKGGEL------IRVIEADRHVVNCIEPHPH-STVLASSGIESDIKI 411 (492)
Q Consensus 349 ~~~s~~-g~~l~sg~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~i 411 (492)
+| .|. ...|+++++|..+-|||+...-. +..+. -.+.|+.+.|++. ..+++.+. ++++.+
T Consensus 294 aW-aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 294 AW-APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred Ee-cCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99 665 56899999999999999965422 22222 3467999999965 44666654 455544
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.9e-19 Score=144.55 Aligned_cols=280 Identities=16% Similarity=0.173 Sum_probs=190.9
Q ss_pred EeecCccceEEEEEEcCC-CCEEEEecCC-------CeEEEEECCCCc---------eeeeeccCcCcceEEEEecCCCC
Q 011160 55 AKLDKHRGCVNTVSFNTD-GDILISGSDD-------RRVILWDWKTER---------VKLSFHSGHNDNVFQAKIMPFTD 117 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d-------~~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~ 117 (492)
..|..|.+.|..|+-+|- .++|+|+..+ -.+.||.+.... ++..+...+-+.|.|+.|.| +
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P--n 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP--N 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC--C
Confidence 566778999999999994 5666666442 246799886432 23333335667999999999 9
Q ss_pred CceEEeecCCCcEEEEecccCCeee-e---EEeecCCCceEEEEEcC--CCCcEEEEEcCCCcEEEEeCCCCCccceeec
Q 011160 118 DRSIVTCAADGQVRHAQILERGGVE-T---KLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (492)
Q Consensus 118 ~~~l~~~~~dg~v~iw~~~~~~~~~-~---~~~~~~~~~v~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (492)
+..+++-. |..|.+|++.....+. . ..-..+....++-+|+| ++ +. +....|+++..||+++.+....+..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-nq-v~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-NQ-VATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-ce-EEEeCCCcEEEEEccchhhhcchhh
Confidence 99988876 7889999998876532 1 11123566788889999 34 44 4455689999999999887766643
Q ss_pred CCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC
Q 011160 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (492)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 271 (492)
. |...+..+.|+|....+|++++.||.|++||.|+.+. +.....+|...|.++.|+|
T Consensus 212 A---------Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--------------pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 212 A---------HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--------------PVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred h---------hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--------------cccccCCCceEEEEEEecC
Confidence 2 5557899999998778899999999999999998652 4556677899999999999
Q ss_pred C-CCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEE
Q 011160 272 Q-SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349 (492)
Q Consensus 272 ~-~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 349 (492)
. .++|.+++ |..+.+|....-.....+........ .++. .+-...+......+.++..|... |.+++
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese------~e~~---dseer~kpL~dg~l~tydehEDS--VY~~a 337 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE------SEDE---DSEERVKPLQDGQLETYDEHEDS--VYALA 337 (370)
T ss_pred ccceEEEecCCCceeEEEecccccccccccccccccc------Ccch---hhHHhcccccccccccccccccc--eEEEe
Confidence 5 46677776 55788887765332222110000000 0000 00000011113355688889887 99999
Q ss_pred eecCCCcEEEEeeccCeEEEEecC
Q 011160 350 FFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 350 ~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
|-+.+-=.+|+-+.||.+.|=.+.
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCC
Confidence 944444567788999999886653
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=3.6e-19 Score=163.76 Aligned_cols=286 Identities=13% Similarity=0.118 Sum_probs=203.1
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee----EEeecCCCceEEEEE
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET----KLLGKHQGRAHKLAI 158 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~----~~~~~~~~~v~~i~~ 158 (492)
+.+.||++......... -.-...|.++.|+|+ +..+++.|..+|+|.+||++.+..... .....|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47899999876332222 245678999999996 788899999999999999988765211 123468889999999
Q ss_pred cCCCC-cEEEEEcCCCcEEEEeCCCCCccceeecCCCCC--CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 159 EPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 159 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
..+-. .-|++++.||.|..|+++.-............. .........+++++|.|.+...|+.|+..|.|.--....
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76432 347899999999999887654422211111111 001113457899999998889999999999988744433
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
.+.... ..+........|.++|+++.++|=+ +++.+++|.++++|.....
T Consensus 380 ~~~~~~-------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~---------------------- 430 (555)
T KOG1587|consen 380 YTPAPE-------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI---------------------- 430 (555)
T ss_pred Cccccc-------ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----------------------
Confidence 321110 1122333455678999999999965 5666666889999987631
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEEeeccCeEEEEecCC--CeeeEEEecCCceeEEE
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKG--GELIRVIEADRHVVNCI 391 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~ 391 (492)
..++..+..+... +++++| ||-. ..++++..+|.|.|||+.. ..++...+.+....+.+
T Consensus 431 ---------------~~Pl~~~~~~~~~--v~~vaW-SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~ 492 (555)
T KOG1587|consen 431 ---------------ASPLLSLDSSPDY--VTDVAW-SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV 492 (555)
T ss_pred ---------------CCcchhhhhccce--eeeeEE-cCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence 2334444444444 899999 9876 4677888899999999854 34555555566677889
Q ss_pred eecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 392 EPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 392 ~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
.|++.|+.|+.|...|++.+|++...
T Consensus 493 ~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ecCCCCcEEEEecCCCcEEEEEcCch
Confidence 99999999999999999999999764
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=2.2e-19 Score=144.34 Aligned_cols=210 Identities=22% Similarity=0.262 Sum_probs=163.0
Q ss_pred CccceEEEEEEcCCC-----CEEEEecCCCeEEEEECCCCcee---eee-----ccCcCcceEEEEecCCCCCceEEeec
Q 011160 59 KHRGCVNTVSFNTDG-----DILISGSDDRRVILWDWKTERVK---LSF-----HSGHNDNVFQAKIMPFTDDRSIVTCA 125 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~-----~~l~s~~~d~~i~iwd~~~~~~~---~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~ 125 (492)
.|.-+++.+.|.|+. .+|||.+. .+|+|.+...+.. ... ...+..++++..|+.. +.++|.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence 588899999999976 46777653 6999998742211 111 1345678999999873 778999999
Q ss_pred CCCcEEEEecccCCe-eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeec
Q 011160 126 ADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (492)
Q Consensus 126 ~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
-|-+..|||+.++.. .....+-.|...|..|+|...+..+|++.+.||.+++||++..+-...+...+. ...
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-------~~~ 243 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-------PST 243 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-------CCC
Confidence 999999999998732 223447789999999999998888999999999999999998776555443222 244
Q ss_pred ceEEEEEcCCCCceEEEecCC-CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeecCC
Q 011160 205 NLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE 282 (492)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~ 282 (492)
+...++|++++.+++|+-..| ..|.|.|+|... .+...+.+|.+.|+.++|.|.. ..|++++|+
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------------TPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------------cceehhhcCcccccceEecCCCCceeeecCCc
Confidence 688999999888888876544 569999998754 2455677899999999999964 678888877
Q ss_pred -cEEEEecCCC
Q 011160 283 -FIYLFTQDMG 292 (492)
Q Consensus 283 -~i~~~d~~~~ 292 (492)
...+||+...
T Consensus 310 ~qaliWDl~q~ 320 (364)
T KOG0290|consen 310 CQALIWDLQQM 320 (364)
T ss_pred ceEEEEecccc
Confidence 6999999864
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.5e-19 Score=163.50 Aligned_cols=350 Identities=14% Similarity=0.134 Sum_probs=228.7
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.++|+++.+|+|..||.|.+|.-....-. . ...+.+.-|...|.+++|+++|.+|++||..|
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~--------------~---~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDD--------------S---ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccc--------------c---ccceEEEecccccceeEEecCCceEeecccce
Confidence 467899999999999999999965420110 0 01256778999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeE-Ee--------ecCCCceE
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LL--------GKHQGRAH 154 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~--------~~~~~~v~ 154 (492)
.+.+|.+.+++ ++++..-.++|..+.++| ++++.+....|..|.+....+....... -+ .+..+-.+
T Consensus 274 VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~--ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 274 VLVLWQLETGK--KQFLPRLGSPILHIVVSP--DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred EEEEEeecCCC--cccccccCCeeEEEEEcC--CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 99999999988 667778889999999999 9999999999999999987543322110 00 11234467
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcc-eeecceEEEEEcCCCCceEEEec--------CC
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNANLFAVAG--------SD 225 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~--------~d 225 (492)
.++++|.- +.++-.+..|.|.+||+-+...+..+..-......+. .....+++++.+-. +.+++|+- .|
T Consensus 350 ~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 350 GVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-GSWMATLEARIDKFNFFD 427 (792)
T ss_pred eEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-ceEEEEeeeeehhhhccC
Confidence 78899954 4678889999999999999888877665444433333 35567888888887 78888753 22
Q ss_pred --CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC-CCC-eeEeec-CCcEEEEecCCCCCCCCCCC
Q 011160 226 --EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSE-LLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 226 --g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~ 300 (492)
-.+++|-.........+ ...+..+|...+...++.+ ... ..++++ ++.+++|-+..........
T Consensus 428 ~e~~LKFW~~n~~~kt~~L----------~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~- 496 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFIL----------NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS- 496 (792)
T ss_pred ceEEEEEEEEcCCcceeEE----------EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc-
Confidence 34677876543211100 0112334555454444444 222 566665 7789999986543222210
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeec--cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC-Cee
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GEL 377 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~-~~~ 377 (492)
..-.....+ |..+ +++++| +.||..|+.+ .+++|.+||..+ .++
T Consensus 497 -----------------------------s~W~c~~i~sy~k~~--i~a~~f-s~dGslla~s-~~~~Itiwd~~~~~~l 543 (792)
T KOG1963|consen 497 -----------------------------SNWTCKAIGSYHKTP--ITALCF-SQDGSLLAVS-FDDTITIWDYDTKNEL 543 (792)
T ss_pred -----------------------------cceEEeeeeccccCc--ccchhh-cCCCcEEEEe-cCCEEEEecCCChhhh
Confidence 000111111 3333 788888 9999777665 588999999988 444
Q ss_pred eEEEecCCceeEEEeecCCCC--eEEEeeCCCCEEEeccCCCCCC
Q 011160 378 IRVIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 378 ~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
......-..++..+.+..... ..+.......+.+|++-+..+.
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~ 588 (792)
T KOG1963|consen 544 LCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLI 588 (792)
T ss_pred hccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhee
Confidence 333332233344444432211 1222333567888888765543
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=7.5e-18 Score=140.25 Aligned_cols=281 Identities=13% Similarity=0.197 Sum_probs=196.4
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC--CcEEEEecccC
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--GQVRHAQILER 138 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--g~v~iw~~~~~ 138 (492)
...+..+.|+.+...|..|+.|| .++|..+........ ......|.-+-|+ ..++|..+.+ ..+++.+++..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeecc----cceeEEEecCCCceEEEEEcccC
Confidence 44677788999999999999998 788888765542222 1223356666775 3566655544 45899998877
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
..++... ....|.++.++.+ .|+++-.+ .|+|||+++.+.+..+...+. +...+.++++++. +.+
T Consensus 79 ~~ICe~~---fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~-------n~~gl~AlS~n~~-n~y 143 (391)
T KOG2110|consen 79 TTICEIF---FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPP-------NPKGLCALSPNNA-NCY 143 (391)
T ss_pred ceEEEEe---cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCC-------CccceEeeccCCC-Cce
Confidence 7666543 3478999999874 35555544 499999999999888765432 3334666666665 446
Q ss_pred EEEe--cCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-c-EEEEecCCCCC
Q 011160 219 FAVA--GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-F-IYLFTQDMGLG 294 (492)
Q Consensus 219 l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~-i~~~d~~~~~~ 294 (492)
++.- ...|.|.+||..+.+ +...+..|.+.+.+++|+++|.+||++++. + |+||.+.++.
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~---------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~- 207 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQ---------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ- 207 (391)
T ss_pred EEecCCCCCceEEEEEcccce---------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc-
Confidence 6542 356899999998865 344566799999999999999999999954 4 9999998853
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
.+..|+-...+..|.+++| +|++++|++.+..++|+||.+..
T Consensus 208 -------------------------------------kl~eFRRG~~~~~IySL~F-s~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 208 -------------------------------------KLYEFRRGTYPVSIYSLSF-SPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -------------------------------------EeeeeeCCceeeEEEEEEE-CCCCCeEEEecCCCeEEEEEecc
Confidence 3444444444667999999 99999999999999999999843
Q ss_pred Cee-------------------------------------eEEEecCCc---eeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 375 GEL-------------------------------------IRVIEADRH---VVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 375 ~~~-------------------------------------~~~~~~h~~---~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
-.. ....+...+ .+..+.-.+..+.+..++.||.++.|.+
T Consensus 250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 110 000111111 1222222346678888999999999988
Q ss_pred CC
Q 011160 415 NA 416 (492)
Q Consensus 415 ~~ 416 (492)
..
T Consensus 330 ~~ 331 (391)
T KOG2110|consen 330 PP 331 (391)
T ss_pred CC
Confidence 65
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=7.7e-19 Score=141.11 Aligned_cols=272 Identities=18% Similarity=0.236 Sum_probs=193.3
Q ss_pred CCeEEEEECCCC--ceeeeeccCcCcceEEEEecCCCCCceEEeecCC-------CcEEEEecccCCeee-------eEE
Q 011160 82 DRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------GQVRHAQILERGGVE-------TKL 145 (492)
Q Consensus 82 d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g~v~iw~~~~~~~~~-------~~~ 145 (492)
|+.|.+.+++.+ ......+..|.+.|..++-+|+ +...|+++..+ -.+.||.+....... ...
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 677877766543 3334444678899999999994 66677766542 246799986543220 001
Q ss_pred ee-cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecceEEEEEcC-CCCceEEEe
Q 011160 146 LG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVA 222 (492)
Q Consensus 146 ~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~ 222 (492)
+. .+-+.|.|+.|.|++. .+++-. |..|.+|++..+.. ...+....... +....++-+|+| .+++.+++.
T Consensus 118 Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-----~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-----MRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred CCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeeccccccc-----ccceecccccCCCCccceEEEe
Confidence 22 3446899999999985 445444 88999999998776 33332222111 233567888999 346666654
Q ss_pred cCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCe-eEeecC-CcEEEEecCCCCCCCCCCC
Q 011160 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYND-EFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 223 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~-~~i~~~d~~~~~~~~~~~~ 300 (492)
.|+++..||+|+.+. ...+...|...|..+.|+|+.++ |++++| +.|++||.+..
T Consensus 191 -~d~tl~~~D~RT~~~--------------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------- 247 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKK--------------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------- 247 (370)
T ss_pred -CCCcEEEEEccchhh--------------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------
Confidence 589999999998653 33455667788999999999764 667774 57999999874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC-CCcEEEEeeccCeEEEEecCCC----
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGG---- 375 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~g~~l~sg~~dg~i~iwd~~~~---- 375 (492)
..++..+.+|... |.++.| .| ..++|.+|+.|..|.+|...+-
T Consensus 248 -----------------------------k~pv~el~~HsHW--vW~VRf-n~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 248 -----------------------------KFPVQELPGHSHW--VWAVRF-NPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred -----------------------------CccccccCCCceE--EEEEEe-cCccceEEEecCCCceeEEEecccccccc
Confidence 4567888899887 899999 66 4578889999999999976321
Q ss_pred -------------------------eeeEEEecCCceeEEEeecCCCCe-EEEeeCCCCEEEeccCC
Q 011160 376 -------------------------ELIRVIEADRHVVNCIEPHPHSTV-LASSGIESDIKILTPNA 416 (492)
Q Consensus 376 -------------------------~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~ 416 (492)
..+.++..|...|++++||.-..+ +|+-+.||.+.|=++..
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 122356778999999999987775 78889999999877654
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=1e-18 Score=160.87 Aligned_cols=257 Identities=16% Similarity=0.185 Sum_probs=176.7
Q ss_pred ccceEEEEEEcC-CCCEEEEecCCCeEEEEECCCCcee-----eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 60 HRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 60 h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
-...|+|+.|+| +..+||.|..+|+|.+||+..+... ......|..+++.+.|.....+.-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 367899999999 5678899999999999999876652 1122468899999999873334559999999999999
Q ss_pred ecccCCeee-eEEee---------cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccc--eeecCCCCCCCcce
Q 011160 134 QILERGGVE-TKLLG---------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE--LFTCRPIDDRRNYM 201 (492)
Q Consensus 134 ~~~~~~~~~-~~~~~---------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~ 201 (492)
+++.-.... ...+. .....+++++|.+..++.|+.|+..|.|..-+........ .++.+.. .-.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~----~~~ 396 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST----FIT 396 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc----ccc
Confidence 886543311 10010 1234689999999999999999999999874433322221 1111110 011
Q ss_pred eecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec
Q 011160 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN 280 (492)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~ 280 (492)
|.+.|+++.++|-...+|++++ |.+++||...... .+......+...+++++|||-.- .++++.
T Consensus 397 h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~--------------~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 397 HIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA--------------SPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cCcceEeeecCCCccceeeeec-cceeEeccccCCC--------------CcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 6678999999998666666666 9999999986321 12233334456699999999764 455555
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEE
Q 011160 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (492)
Q Consensus 281 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~ 359 (492)
+|.|.+||+..... .+..+..-+.. ..+.+.+ ++.|+.|+
T Consensus 462 ~~G~l~iWDLl~~~~------------------------------------~Pv~s~~~~~~--~l~~~~~-s~~g~~la 502 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDE------------------------------------EPVLSQKVCSP--ALTRVRW-SPNGKLLA 502 (555)
T ss_pred CCCceehhhhhcccc------------------------------------CCccccccccc--ccceeec-CCCCcEEE
Confidence 77899999976432 12222222211 1344444 99999999
Q ss_pred EeeccCeEEEEecCC
Q 011160 360 SGSDCGRIFIWKKKG 374 (492)
Q Consensus 360 sg~~dg~i~iwd~~~ 374 (492)
+|...|++++|++..
T Consensus 503 vGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 503 VGDANGTTHILKLSE 517 (555)
T ss_pred EecCCCcEEEEEcCc
Confidence 999999999999853
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.7e-18 Score=134.58 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=191.8
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCC---------CceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEE
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKT---------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 132 (492)
..|.+-+++|.+++|+.|..+|.|.+..+.+ ++....-..+|.++|+.++|. ..+|++|+ ||.|+=
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeecc-CceEEE
Confidence 4566778999999999999999999998753 222222237899999999996 45677776 499999
Q ss_pred EecccCCe-e-----eeEEeecCC-----CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcce
Q 011160 133 AQILERGG-V-----ETKLLGKHQ-----GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (492)
Q Consensus 133 w~~~~~~~-~-----~~~~~~~~~-----~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (492)
|..+.... . .......|. -.|++|...|..+. ++.++.|+.++-||+++++....++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rG---------- 154 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRG---------- 154 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcC----------
Confidence 98765332 1 111122222 36889999998754 45556899999999999999888875
Q ss_pred eecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCC-CcccceEEEEEcCCCCeeEeec
Q 011160 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
|...+.+++--.. ...+++|++||++|+||.++++....+.. +....... .-...|.+++. +..+|++|+
T Consensus 155 HtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~------yk~~~~lRp~~g~wigala~--~edWlvCGg 225 (325)
T KOG0649|consen 155 HTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEP------YKNPNLLRPDWGKWIGALAV--NEDWLVCGG 225 (325)
T ss_pred Ccceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEecc------ccChhhcCcccCceeEEEec--cCceEEecC
Confidence 4556778877444 35789999999999999999886554322 11111222 22345667665 456899998
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE
Q 011160 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (492)
Q Consensus 281 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s 360 (492)
...+.+|.++..... .+..+.+| +..+.| ....+++
T Consensus 226 Gp~lslwhLrsse~t------------------------------------~vfpipa~-----v~~v~F---~~d~vl~ 261 (325)
T KOG0649|consen 226 GPKLSLWHLRSSEST------------------------------------CVFPIPAR-----VHLVDF---VDDCVLI 261 (325)
T ss_pred CCceeEEeccCCCce------------------------------------EEEecccc-----eeEeee---ecceEEE
Confidence 889999999874321 22223333 556666 3457788
Q ss_pred eeccCeEEEEecCCCeeeEEEecCCceeEEEeecCC-CCeEEEeeCCCCEEEe
Q 011160 361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKIL 412 (492)
Q Consensus 361 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw 412 (492)
++....|.-|.+ +|.+...+.......++..|+.. -++|-.++....+.|+
T Consensus 262 ~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 262 GGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 888889999987 66666666554445666666533 2355556666666664
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=6.3e-19 Score=167.82 Aligned_cols=315 Identities=18% Similarity=0.188 Sum_probs=204.0
Q ss_pred eeeeeEeecCccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCc-------eeeeeccCcCcceEEEEecCCCCCceE
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPFTDDRSI 121 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l 121 (492)
+-.++..+..|...|..++.++.. .+++|||.||+|++|+...-. ...++ ......+.++.+.+ .++.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~--~~~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCG--NGDQF 1113 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEecc--CCCeE
Confidence 334557888999999999998754 999999999999999986421 12222 23466888999988 89999
Q ss_pred EeecCCCcEEEEecccCCee-----eeEEeecC-CCceE-EEEEcCCCC-cEEEEEcCCCcEEEEeCCCCCccceeecCC
Q 011160 122 VTCAADGQVRHAQILERGGV-----ETKLLGKH-QGRAH-KLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRP 193 (492)
Q Consensus 122 ~~~~~dg~v~iw~~~~~~~~-----~~~~~~~~-~~~v~-~i~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 193 (492)
|.++.||.|++.++...... ..+....+ .+.+. .-+|..... ..++.+..-+.|..||++.......++...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998762111 11111111 22333 334443322 378888889999999999988777665443
Q ss_pred CCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC--
Q 011160 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-- 271 (492)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-- 271 (492)
..+.|++++.+|. ++++++|+..|.+.+||+|-+...... ..++..+++.+..+|
T Consensus 1194 --------~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw--------------~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1194 --------RHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSW--------------EHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred --------cccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecc--------------cCcccCCcceEEeeccC
Confidence 4457999999997 789999999999999999976543321 122345667776665
Q ss_pred -CCCeeEeecC---CcEEEEecCCCCCCCCCCCC-CCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeee
Q 011160 272 -QSELLVSYND---EFIYLFTQDMGLGPNPPPSS-PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (492)
Q Consensus 272 -~~~~l~~~~~---~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 346 (492)
.....++++. +.+.+|++.++.....+..+ +...-.... .+.. ... .+.-. ..
T Consensus 1251 ~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~-----------Ps~~----~~k-----p~~~~--~~ 1308 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYAL-----------PSND----ARK-----PDSLA--GI 1308 (1431)
T ss_pred CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhc-----------cccc----CCC-----CCccc--ce
Confidence 3345555543 36999999998655443322 000000000 0000 000 11111 22
Q ss_pred eEEeecCCCcEEEEeeccCeEEEEecCCCeee------------------------------------------------
Q 011160 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI------------------------------------------------ 378 (492)
Q Consensus 347 ~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~------------------------------------------------ 378 (492)
...+ ...+.++.+|+.|..|+.||....+..
T Consensus 1309 ~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~ 1387 (1431)
T KOG1240|consen 1309 SCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALREN 1387 (1431)
T ss_pred eeec-ccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccc
Confidence 2233 344568899999999999997321110
Q ss_pred EEE--------ecCCceeEEEeecCCC-CeEEEeeCCCCEEEec
Q 011160 379 RVI--------EADRHVVNCIEPHPHS-TVLASSGIESDIKILT 413 (492)
Q Consensus 379 ~~~--------~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~ 413 (492)
..+ ..|..+|++|++.... .+|++++.||.|+||.
T Consensus 1388 ~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1388 QKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1355678888876544 5899999999999994
No 192
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=9.6e-20 Score=152.46 Aligned_cols=209 Identities=15% Similarity=0.177 Sum_probs=158.0
Q ss_pred eecCccceEEEEEEcC-CCCEEEEecCCCeEEEEECCCCcee------eeeccCcCcceEEEEecCCCCCceEEeecCCC
Q 011160 56 KLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVK------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 128 (492)
.+.||+++|..++|+| +...||+||.|.+|.||.+..+... ...+.+|...|.-++|+|. -.+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-A~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-APNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc-chhhHhhccCCc
Confidence 4568999999999999 5678999999999999998765432 2234799999999999993 567889999999
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
+|.+|++.+++.... +. |.+.|.++.|+.+| .+|++.+.|..|+|||.++++.+..-..+. .. .-..
T Consensus 155 ~v~iWnv~tgeali~--l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~he--------G~-k~~R 221 (472)
T KOG0303|consen 155 TVSIWNVGTGEALIT--LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHE--------GA-KPAR 221 (472)
T ss_pred eEEEEeccCCceeee--cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeeccccc--------CC-Ccce
Confidence 999999999987765 55 99999999999999 589999999999999999999876654332 11 2234
Q ss_pred EEEcCCCCceEEEec---CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCc
Q 011160 209 IAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEF 283 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~ 283 (492)
+.|-.+ +.++.+|- .++.+.+||..+.+.- . ..........|.---|.++.+++..++ |+.
T Consensus 222 aifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP--------~-----~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 222 AIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEP--------I-----ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred eEEecc-CceeeeccccccccceeccCcccccCc--------c-----eeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence 556665 55555443 5778999998765421 0 000111234566666788888777666 558
Q ss_pred EEEEecCCC
Q 011160 284 IYLFTQDMG 292 (492)
Q Consensus 284 i~~~d~~~~ 292 (492)
|+.|.+...
T Consensus 288 IRYyEit~d 296 (472)
T KOG0303|consen 288 IRYFEITNE 296 (472)
T ss_pred eEEEEecCC
Confidence 999998764
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=5.3e-18 Score=138.90 Aligned_cols=320 Identities=15% Similarity=0.178 Sum_probs=214.0
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE-ecCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-GSDD 82 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d 82 (492)
++|+|+|+++|+.+.- .+-|-|.++-++++- +. --..|.-+.|..|..+++. ...+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql---------------------f~-cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQL---------------------FL-CLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHH---------------------HH-HHHHhhheeeeccceeeeeeeecc
Confidence 5799999999999965 788999987776621 11 2356778889888876655 4678
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCce-EEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
+.|.+|++...+-...+ .....++.+++|+| +|+. |.+...+-.|.+|.+.+..... +......+..++|+|+
T Consensus 71 ~~vqvwsl~Qpew~ckI-deg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~---~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYCKI-DEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL---LPHPKTNVKGYAFHPD 144 (447)
T ss_pred ceEEEEEeecceeEEEe-ccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE---ecccccCceeEEECCC
Confidence 89999999988877777 55667899999999 9955 5566778899999998876654 3333455688999999
Q ss_pred CCcEEEEEcC------------------------------------CCcEEEEeCCCCCccceeecCCCCCCCcceeecc
Q 011160 162 SPHVFYTCGE------------------------------------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (492)
Q Consensus 162 ~~~~l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (492)
|. +.+.+++ +..+.+||---...+..+ .....
T Consensus 145 g~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-----------e~~lG 212 (447)
T KOG4497|consen 145 GQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-----------ERGLG 212 (447)
T ss_pred Cc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-----------eeccc
Confidence 94 4444432 122334432111111111 13346
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC-----------------------------CCCC----------
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST-----------------------------DFGQ---------- 246 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-----------------------------~~~~---------- 246 (492)
+..++|+|. +++++.|+.|+.+|+.+--+-+....+ .+..
T Consensus 213 ~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 213 LKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE 291 (447)
T ss_pred eeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence 889999997 689999999999987543222111100 0000
Q ss_pred ----------C--ccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC---cEEEEecCCCCCCCCCCCCCCCccccccc
Q 011160 247 ----------P--ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE---FIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (492)
Q Consensus 247 ----------~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (492)
+ .....+..-.......+.-++|++|..++++-.+. .+.+||++..+.
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l----------------- 354 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL----------------- 354 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh-----------------
Confidence 0 00111111122234567889999999999998876 499999986321
Q ss_pred cCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEE
Q 011160 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCI 391 (492)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 391 (492)
...+ .... .|....| +|....|+.+.....+++|...-...+.. ....-.|..+
T Consensus 355 ---------------------~avL-iQk~--piraf~W-dP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l 408 (447)
T KOG4497|consen 355 ---------------------HAVL-IQKH--PIRAFEW-DPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKL 408 (447)
T ss_pred ---------------------hhhh-hhcc--ceeEEEe-CCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeE
Confidence 1111 1112 2788888 99988888887788899999855444433 2233569999
Q ss_pred eecCCCCeEEEeeCCCC
Q 011160 392 EPHPHSTVLASSGIESD 408 (492)
Q Consensus 392 ~~s~~~~~l~s~~~dg~ 408 (492)
+|..+|..++-.+.|.-
T Consensus 409 ~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 409 QWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EecCCCcEEEEEcCCce
Confidence 99999999999998863
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=3.3e-18 Score=139.61 Aligned_cols=222 Identities=14% Similarity=0.093 Sum_probs=165.5
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec-
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI- 135 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~- 135 (492)
-..+|+|.+|++|+..+|.+-....|.||...... ...++ ..|...|+.+.|+| ..+.|++|+.|..-++|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap--~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAP--KSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecC--CCCceeEccCCCCccccccC
Confidence 35799999999999999999999999999977655 33444 78999999999999 9999999999999999998
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
..+...+...+..+...++++.|+|.+ +.|++|+....|.+|-++....-..-+.... .....|+++.|+|.
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikk------PirStv~sldWhpn- 157 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKK------PIRSTVTSLDWHPN- 157 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCC------ccccceeeeeccCC-
Confidence 455556666688899999999999999 5789999999999998876543211110000 04457999999997
Q ss_pred CceEEEecCCCeEEEEecccccccCCC---CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGST---DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (492)
+-++++|+.|+..++|..--....... ..+..+..-+.........+.+..+.|+|+|..|+-.+ +..+.+-|...
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 689999999999999986543322211 11111111111111223467899999999999887666 77888887665
Q ss_pred C
Q 011160 292 G 292 (492)
Q Consensus 292 ~ 292 (492)
.
T Consensus 238 p 238 (361)
T KOG1523|consen 238 P 238 (361)
T ss_pred C
Confidence 3
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=9.3e-19 Score=164.20 Aligned_cols=297 Identities=14% Similarity=0.163 Sum_probs=200.5
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecC---ccceEEEEEEcC--CCCEEEE
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HRGCVNTVSFNT--DGDILIS 78 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~s~--~~~~l~s 78 (492)
+.|+|-...++++...-.|+|||.+.++.. ..|.. -...|+.+.+-. |..++++
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l---------------------~~F~n~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLL---------------------NGFDNGAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCcee---------------------ccccCCCCCCCccceeeeecccchhheee
Confidence 456777888999997789999999988765 23332 246788998865 4578999
Q ss_pred ecCCCeEEEEECC-C----Cceeeee------ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEee
Q 011160 79 GSDDRRVILWDWK-T----ERVKLSF------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG 147 (492)
Q Consensus 79 ~~~d~~i~iwd~~-~----~~~~~~~------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 147 (492)
|+.||.||||+-. . .+.+..+ ..+..+.-.-+.|.. ...+|++++.-..|+|||........... .
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-~ 1205 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGHLLVTGDVRSIRIWDAHKEQVVADIP-Y 1205 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh--hCCeEEecCCeeEEEEEecccceeEeecc-c
Confidence 9999999999632 2 2222222 011111113456766 55566666667899999997765554432 3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCe
Q 011160 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (492)
Q Consensus 148 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (492)
+....|+++.-.....+++++|..||.|++||.+........... +.|....+|..+.+.+.|-..|++|+.+|.
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-----R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-----REHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-----cccCCcccceeEEeecCCCcceeeeccCCe
Confidence 355677887766555579999999999999999876543222111 111122248899999875456999999999
Q ss_pred EEEEecccccccCCCCCCCCccccCCCCcCCCc--ccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCc
Q 011160 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (492)
Q Consensus 228 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 305 (492)
|++||+|........ ....+- .+..+++..++....+|+|+...|+||++...+.....
T Consensus 1281 I~~~DlR~~~~e~~~------------~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k------- 1341 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFL------------TIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK------- 1341 (1387)
T ss_pred EEEEecccCcccccc------------eeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc-------
Confidence 999999985222111 111111 22589999999999999999989999998764322210
Q ss_pred cccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
.-..|.+.... .+.+++| +|..-++|+|+.|.+|.||......
T Consensus 1342 --------------------------~n~~F~~q~~g-s~scL~F-HP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1342 --------------------------YNPGFMGQRIG-SVSCLAF-HPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred --------------------------cCcccccCcCC-Ccceeee-cchhHhhhhccCCceEEEeecCCcC
Confidence 01111121111 2688998 9999999999999999999876543
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=2.5e-19 Score=149.96 Aligned_cols=211 Identities=21% Similarity=0.263 Sum_probs=161.2
Q ss_pred ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee-----eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCc
Q 011160 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-----ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (492)
Q Consensus 100 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~ 174 (492)
..+|+++|..++|+|+ +...||+|+.|.+|.||.+..+... ....+.+|...|--++|+|...++|++++.|.+
T Consensus 77 v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred ccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3789999999999997 7788999999999999999765432 234588999999999999998899999999999
Q ss_pred EEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCC
Q 011160 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (492)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (492)
|.+|++.+++....+. |...|.++.|+.+ |.+|++++.|..|+|||.++++.+...
T Consensus 156 v~iWnv~tgeali~l~-----------hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e~------------ 211 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-----------HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSEG------------ 211 (472)
T ss_pred EEEEeccCCceeeecC-----------CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeeec------------
Confidence 9999999999877765 5668999999998 789999999999999999998865431
Q ss_pred CcCCCcccceEEEEEcCCCCeeEeecC----CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccc
Q 011160 255 NLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (492)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (492)
..+....-..+.|..+|.++.+|-. ..+-+||......+
T Consensus 212 --~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP----------------------------------- 254 (472)
T KOG0303|consen 212 --VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP----------------------------------- 254 (472)
T ss_pred --ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-----------------------------------
Confidence 1112234456778888986666543 25999997763211
Q ss_pred cCCceeeccccceeeeeEEeecCCCcEEE-EeeccCeEEEEecCCCe
Q 011160 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 331 ~~~~~~~~~~~~~~v~~~~~~s~~g~~l~-sg~~dg~i~iwd~~~~~ 376 (492)
.....+....+ |. +-|+++|.++|+ +|-.|+.|+.|.+..-.
T Consensus 255 ~~~~elDtSnG---vl-~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 255 IALQELDTSNG---VL-LPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeEEeccCCc---eE-EeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 11222322222 22 334689888776 56679999999986554
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.84 E-value=5.8e-18 Score=151.92 Aligned_cols=323 Identities=15% Similarity=0.141 Sum_probs=197.8
Q ss_pred Cce-EeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 10 NKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 10 ~~~-l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
+++ +++-..+|.|.+.|..+.+.+ .++......-..+.|+|||+++++++.||.|.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~---------------------~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVV---------------------ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVI 63 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEE---------------------EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEE---------------------EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence 344 456667899999999988776 5565444444457899999999999999999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEEEecccCCeeeeEEeec-----CCCceEEEEEcCCC
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGK-----HQGRAHKLAIEPGS 162 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~-----~~~~v~~i~~~~~~ 162 (492)
|+.+++.+.++..+ ....++++++ +|++++++. ..+.+.++|..+.+.+......+ ....+..|..+|..
T Consensus 64 D~~~~~~v~~i~~G--~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 64 DLATGKVVATIKVG--GNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp ETTSSSEEEEEE-S--SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred ECCcccEEEEEecC--CCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC
Confidence 99999998888433 3568899999 999998776 58999999999887766533322 23467888888888
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
+.++++.-..+.|.+.|....+.+..-... .........|+|++..+++.......|.++|..++++....
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~---------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIK---------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred CEEEEEEccCCeEEEEEeccccccceeeec---------ccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 645555555688888898776544221111 22245678999984334455567789999999887754432
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCC-CCeeEeec----------CCcEEEEecCCCCCCCCCCCCCCCccccccc
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN----------DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (492)
..+. ..|..++..+- +|. |...++.. .+.+.+|+...
T Consensus 211 ~~g~-----------~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~-------------------- 258 (369)
T PF02239_consen 211 DTGK-----------KPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA-------------------- 258 (369)
T ss_dssp E-SS-----------SBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB--------------------
T ss_pred eccc-----------ccccccccccc-CCCcceEEeeccccceecccccCCccccchhhc--------------------
Confidence 2211 11233333321 222 12222222 22233333332
Q ss_pred cCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe----eccCeEEEEecCCCeeeEEEecCC-c
Q 011160 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG----SDCGRIFIWKKKGGELIRVIEADR-H 386 (492)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg----~~dg~i~iwd~~~~~~~~~~~~h~-~ 386 (492)
.+.++++...... ..+.. +|+++++.+. ...+.|.++|..+.+.+..+.... .
T Consensus 259 ------------------wkvv~~I~~~G~g---lFi~t-hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~ 316 (369)
T PF02239_consen 259 ------------------WKVVKTIPTQGGG---LFIKT-HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK 316 (369)
T ss_dssp ------------------TSEEEEEE-SSSS-----EE---TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-
T ss_pred ------------------CeEEEEEECCCCc---ceeec-CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC
Confidence 3455566654443 34454 9999999987 556899999999998888775332 3
Q ss_pred eeEEEeecCCCCeEEEeeCC--CCEEEeccCCCCCC
Q 011160 387 VVNCIEPHPHSTVLASSGIE--SDIKILTPNAADRA 420 (492)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~d--g~i~iw~~~~~~~~ 420 (492)
.+..+.|+++|+.+..+..+ +.|.|||..+.+..
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 58999999999976555443 36999999987654
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5e-18 Score=133.12 Aligned_cols=246 Identities=15% Similarity=0.151 Sum_probs=169.3
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCe
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (492)
+.+|.+++|++|..+|.|-+..+.+- . +++....-+. ..-..++|.++|+.++|. ..+|++|+. |.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl--~--------s~sa~~~gk~-~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~ 82 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSL--D--------SGSAEPPGKL-KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GL 82 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhh--h--------ccccCCCCCc-ceeeccccCCCeeeeeee--hhheeeccC-ce
Confidence 35788999999999999999988731 1 1111111111 223458999999999998 456777764 99
Q ss_pred EEEEECCCCce------eeee-ccCcC-----cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 85 VILWDWKTERV------KLSF-HSGHN-----DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 85 i~iwd~~~~~~------~~~~-~~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
|+=|....... +... ...|. ..|++|...| ..+.+++++.|+.++-||+++++.... +.+|++.
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP--~enSi~~AgGD~~~y~~dlE~G~i~r~--~rGHtDY 158 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP--SENSILFAGGDGVIYQVDLEDGRIQRE--YRGHTDY 158 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc--CCCcEEEecCCeEEEEEEecCCEEEEE--EcCCcce
Confidence 99998764332 0111 11222 3688999998 667777777899999999999876655 9999999
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
|.++.--...+ .+++|+.||++++||+++++.+..+................|.+++-+.+ ++++|+ ...+.+|.
T Consensus 159 vH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwh 233 (325)
T KOG0649|consen 159 VHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWH 233 (325)
T ss_pred eeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEe
Confidence 99998854443 57999999999999999999988776543322211112335677777653 787765 46799999
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCC
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (492)
++..+....+. -...+..+.|.. ..+++++ .+.+.-|.+..
T Consensus 234 Lrsse~t~vfp----------------ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 234 LRSSESTCVFP----------------IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ccCCCceEEEe----------------cccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 99865332211 134566677744 3555566 45788888764
No 199
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=2.2e-20 Score=170.67 Aligned_cols=272 Identities=15% Similarity=0.195 Sum_probs=201.7
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
|.|..+|.+++||+.|..|+||.++++.+. ..+.||.+.|+.++.+....++++++.|.
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~~~l---------------------As~rGhs~ditdlavs~~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETARCL---------------------ASCRGHSGDITDLAVSSNNTMIAAASNDK 254 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccchhhh---------------------ccCCCCccccchhccchhhhhhhhcccCc
Confidence 457889999999999999999999999888 67899999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC-CeeeeEEee-cCCCceEEEEEcCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLG-KHQGRAHKLAIEPG 161 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~-~~~~~v~~i~~~~~ 161 (492)
.|++|.+.++.++..+ .+|++.|++++|+| ..+.+.||++++||.+-. .......+. ....-+.++.|...
T Consensus 255 vIrvWrl~~~~pvsvL-rghtgavtaiafsP------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVL-RGHTGAVTAIAFSP------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred eEEEEecCCCchHHHH-hccccceeeeccCc------cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence 9999999999987666 89999999999999 237788999999998721 111101111 12245667777777
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
+ .-+++++.|+.-..|.+..-..... .+.-+.++.+-..+.+++-.+-.+.+|++.++.+
T Consensus 328 ~-~~f~Tgs~d~ea~n~e~~~l~~~~~----------------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l--- 387 (1113)
T KOG0644|consen 328 G-DRFLTGSRDGEARNHEFEQLAWRSN----------------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL--- 387 (1113)
T ss_pred c-cccccccCCcccccchhhHhhhhcc----------------ceEEEeccccccccceeeeeeeEeeeeecccchh---
Confidence 7 4689999999988887654322111 1122222223235667777788899999988863
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCee-Eeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
.+...+|...+..+.++|-+..+ .+++ ++++.|||+..+..
T Consensus 388 ------------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p------------------------- 430 (1113)
T KOG0644|consen 388 ------------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP------------------------- 430 (1113)
T ss_pred ------------hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc-------------------------
Confidence 34566688899999999966544 3444 88999999987532
Q ss_pred CCCCCCCCccccCCcee-eccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCee
Q 011160 320 ASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~ 377 (492)
++.+ .+|.. +....| |++|..++....-|.++|.....++.
T Consensus 431 -------------ik~y~~gh~k---l~d~kF-Sqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 431 -------------IKHYFIGHGK---LVDGKF-SQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred -------------ceeeecccce---eecccc-CCCCceEecCCCCCceEEeccCCCcc
Confidence 2222 34433 556666 99999999888889999988755443
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=2.3e-17 Score=137.36 Aligned_cols=239 Identities=11% Similarity=0.122 Sum_probs=176.8
Q ss_pred CcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC--CcEEEEeCC
Q 011160 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLR 181 (492)
Q Consensus 104 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--g~i~iwd~~ 181 (492)
...+..+.|+. +...|..|+.||. +++.......... .......|--+-|+.. +++..+.+ +.+++++++
T Consensus 5 ~~ti~~~~~Nq--d~~~lsvGs~~Gy-k~~~~~~~~k~~~--~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQ--DSTLLSVGSKDGY-KIFSCSPFEKCFS--KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred Ccceeeeeecc--ceeEEEccCCCce-eEEecCchHHhhc--ccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcc
Confidence 34567777888 8888888988875 7787655433111 1122234555666653 45555444 348999998
Q ss_pred CCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcc
Q 011160 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (492)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
.+..+-.+. ....|.++.++.+ .|++.-.+ .|+|||++..+++.++.. ...+.
T Consensus 77 k~~~ICe~~-----------fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t------------~~~n~ 129 (391)
T KOG2110|consen 77 KKTTICEIF-----------FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIET------------TPPNP 129 (391)
T ss_pred cCceEEEEe-----------cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhc------------cCCCc
Confidence 887776655 3447899999864 44444433 499999999887655322 22244
Q ss_pred cceEEEEEcCCCCeeEeec---CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec
Q 011160 262 VGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (492)
Q Consensus 262 ~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (492)
..+..+++++.+.+|+.-+ .|.|++||..+ .+....+..
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--------------------------------------l~~v~~I~a 171 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--------------------------------------LQPVNTINA 171 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEccc--------------------------------------ceeeeEEEe
Confidence 5677777777777888644 45799999987 567788889
Q ss_pred cccceeeeeEEeecCCCcEEEEeeccCe-EEEEecCCCeeeEEEecCC--ceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEADR--HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 339 ~~~~~~v~~~~~~s~~g~~l~sg~~dg~-i~iwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
|.+. +.+++| +++|.+||++++.|+ |||+.+.+|+.+.+|+--. ..|.+++|+|++++|++.|..++|.|+.++
T Consensus 172 H~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 172 HKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred cCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 9987 889998 999999999999997 8999999999999986433 358999999999999999999999999998
Q ss_pred CCC
Q 011160 416 AAD 418 (492)
Q Consensus 416 ~~~ 418 (492)
...
T Consensus 249 ~~~ 251 (391)
T KOG2110|consen 249 KVS 251 (391)
T ss_pred ccc
Confidence 765
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-17 Score=159.38 Aligned_cols=343 Identities=13% Similarity=0.062 Sum_probs=200.1
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
+.+..++.+.+++||+.||+|++||...-... ....+...++.-..+++.++...+.+..+|.++.
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------------~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------------GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcC--------------cceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 44567788899999999999999998731111 0122223334335678999999999999999999
Q ss_pred CCeEEEEECCCC--cee----eeeccC-cCcceEEE-EecCCCCCc-eEEeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 82 DRRVILWDWKTE--RVK----LSFHSG-HNDNVFQA-KIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 82 d~~i~iwd~~~~--~~~----~~~~~~-~~~~v~~~-~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
||.|++.+++.- ... ...... ..+.+.+| +|.. ..+. .|+.+...+.|..||++...........-..+.
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~-~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA-IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccc-cccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 999999998752 111 111111 22334443 3433 1344 788888889999999988765554334445578
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC--ceEEE-ec-CCCeE
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAV-AG-SDEYT 228 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~-~~-~dg~v 228 (492)
|++++.+|.+ ++++.|+..|.+.+||++-+.++.....+ +..++..+..+|--+ ...++ ++ ..+.|
T Consensus 1198 vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P---------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1198 VTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHP---------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred eeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCc---------ccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 9999999999 59999999999999999988877665432 334566666665422 34444 44 57889
Q ss_pred EEEecccccccCCCCCC---CCccccCCCC--cCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCC-CCCCCC
Q 011160 229 RLYDIRKYKWDGSTDFG---QPADYFCPPN--LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN-PPPSSP 302 (492)
Q Consensus 229 ~i~d~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~-~~~~~~ 302 (492)
.+|++.++.....+-.. .......+.. ........+.+..-.+++-.+.++++..|+.||........ .++...
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s 1347 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPS 1347 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcc
Confidence 99999887432221111 0111111111 00111223333333444444555558899999988754431 111110
Q ss_pred CCcccc----ccccCCCCCCCCC-----CCC--------CCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 303 VSTRSE----ASEMGSDHTSAAS-----PST--------ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 303 ~~~~~~----~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
...... .....++.+.+.. ... ...........-..|... |++++++-.+..+|++++.||
T Consensus 1348 ~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~--Itdma~~~~~q~llvs~s~dG 1425 (1431)
T KOG1240|consen 1348 TSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP--ITDMATLKSEQPLLVSSSRDG 1425 (1431)
T ss_pred ccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccch--hhhhhhhccCccEEEEecCCC
Confidence 000000 0000011110000 000 000111111222345555 788877444566999999999
Q ss_pred eEEEEe
Q 011160 366 RIFIWK 371 (492)
Q Consensus 366 ~i~iwd 371 (492)
.|+||.
T Consensus 1426 ~IkiWk 1431 (1431)
T KOG1240|consen 1426 VIKIWK 1431 (1431)
T ss_pred eeeecC
Confidence 999994
No 202
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=5.2e-19 Score=148.71 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=135.9
Q ss_pred cceEEEEEEcCCCC-EEEEecCCCeEEEEECCCCce--------eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERV--------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 61 ~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
..+|.++.|.++.. .|+||+.|..|++|.+..+.. ....+..|...|+++.|+| +|..|++|+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeeeecCCCceEE
Confidence 56899999998765 999999999999998865432 1223478999999999999 999999999999999
Q ss_pred EEecc--------c------CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC
Q 011160 132 HAQIL--------E------RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (492)
Q Consensus 132 iw~~~--------~------~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (492)
+|... + ...+..+.+.+|...|..++|+|++ .++++++.|..+++||+..+.....+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~d------ 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDD------ 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccc------
Confidence 99876 2 2234456678899999999999999 6899999999999999999998877654
Q ss_pred CcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
|...+..++|.|- .+++++-+.|...+.+.+...+
T Consensus 164 ----h~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 164 ----HEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ----cccccceeecchh-hhhhhhhccCcccceeeeeeee
Confidence 5557899999998 6899999999877777776543
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.5e-18 Score=137.59 Aligned_cols=288 Identities=17% Similarity=0.181 Sum_probs=189.7
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-CccceEEEEEEcCCCCEEEEecCCC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
.|..+ .+|.+|..-|.|++|.+++.+-. ..++ .|...|+.+.-.|+ ..|.+-+.|+
T Consensus 21 ~fqa~-~rL~sg~~~G~V~~w~lqt~r~~---------------------~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 21 LFQAN-ERLMSGLSVGIVKMWVLQTERDL---------------------PLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred hhccc-hhhhcccccceEEEEEeecCccc---------------------hhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 34333 45899999999999999976655 3355 46789999999887 5688899999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCC---CC----ceEEeecCC-CcEEEEecccCCeeeeE--EeecCCCce
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT---DD----RSIVTCAAD-GQVRHAQILERGGVETK--LLGKHQGRA 153 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~----~~l~~~~~d-g~v~iw~~~~~~~~~~~--~~~~~~~~v 153 (492)
.+.+|++..+..+ ..|.-.++++.|.+++ .+ ..++.-+.. -.+.+-|......+... .-.+..+.+
T Consensus 78 ~L~lw~ia~s~~i----~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 78 LLILWTIAYSAFI----SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred eEEEEEccCcceE----EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 9999999865432 2344455666665421 11 112211110 01222222111111110 011233556
Q ss_pred EEEEEcCC-C-CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 154 HKLAIEPG-S-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 154 ~~i~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
.|..+... + ..++++|..+|.+.+||+.++..+..+............+..++.++.|.+. -..=++|+.+..+..|
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceee
Confidence 66664322 2 2356778899999999999985443333222222223336778999999875 4555778888889999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
.+......- .......-.+..|..+..-||++.+|+++ |+.|++|..++
T Consensus 233 Sl~~s~gsl-----------q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt------------------- 282 (323)
T KOG0322|consen 233 SLNHSTGSL-----------QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT------------------- 282 (323)
T ss_pred eeccccCcc-----------cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-------------------
Confidence 886542110 01111222345788899999999999999 77899999988
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
..++..++-|... |++++| +|+..++|+++.|+.|.+|++
T Consensus 283 -------------------l~pLAVLkyHsag--vn~vAf-spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 -------------------LNPLAVLKYHSAG--VNAVAF-SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -------------------CCchhhhhhhhcc--eeEEEe-CCCCchhhhccCCceEEeeec
Confidence 5677888889876 999999 999999999999999999986
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=2.6e-18 Score=159.76 Aligned_cols=237 Identities=12% Similarity=0.139 Sum_probs=160.4
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC---CcEEEEecccCCeeeeEEeecCCCceEEEEE
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 158 (492)
+..|.+||..... ...+ ..|...+.+++|+| +|+.|+.++.+ ..|++||+.++.......+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 5789999987554 3444 56778899999999 99999887643 4699999987654433223333 346899
Q ss_pred cCCCCcEEEEEcCCCcEEEE--eCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 159 EPGSPHVFYTCGEDGLVQHF--DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
+|+|..++++.+.+|.+.|| |+.++.... +.. +...+....|+|++..+++++..+|...||++...
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~----------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS----------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc----------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99996444445567865555 666554322 221 22346789999994434445556788888887543
Q ss_pred cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCC
Q 011160 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (492)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (492)
.... ... .+.. ....|+|+|++|+..+.+.+.+||+.++...
T Consensus 325 ~~~~--------------~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~--------------------- 366 (429)
T PRK01742 325 GGGA--------------SLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTE--------------------- 366 (429)
T ss_pred CCCe--------------EEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeE---------------------
Confidence 2100 011 1111 3578999999998887777888998764211
Q ss_pred CCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec--CCCeeeEEEecCCceeEEEeec
Q 011160 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELIRVIEADRHVVNCIEPH 394 (492)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~s 394 (492)
.+..... ..++.| +|+|++|++++.++.+.+|.+ .+|+.++.+..|.+.+..++|+
T Consensus 367 ------------------~lt~~~~---~~~~~~-sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 367 ------------------VLSSTFL---DESPSI-SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred ------------------EecCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 1111111 234566 999999999999998888875 3688889998888889999999
Q ss_pred CC
Q 011160 395 PH 396 (492)
Q Consensus 395 ~~ 396 (492)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 205
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.5e-17 Score=146.14 Aligned_cols=328 Identities=16% Similarity=0.204 Sum_probs=223.6
Q ss_pred ceEEEEeeccCcchhhhhhh----cccccccceeeeeeeEeecCccceEEEEEEcCCCCEE-EEecCCCeEEEEECCCCc
Q 011160 20 ALVDVWLRELGQLSTRNFAL----RRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTER 94 (492)
Q Consensus 20 g~v~~w~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~ 94 (492)
..|+||++..|+-++...+. ......+...++++++.|. |...-+.|..+|||+|+ |||..--.|++||+..-.
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS 85 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS 85 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence 45999999988877653332 3333444455666777664 78888999999999976 567778899999998655
Q ss_pred eeeeeccCcCcc-eEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC
Q 011160 95 VKLSFHSGHNDN-VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173 (492)
Q Consensus 95 ~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg 173 (492)
.... ...... |.-.-.+- |-..++.-..|..|.+-... +.. ....++ ..-.+|+++.-... |++++...
T Consensus 86 LKFE--RhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~-G~h-y~~RIP---~~GRDm~y~~~scD-ly~~gsg~ 155 (703)
T KOG2321|consen 86 LKFE--RHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKY-GRH-YRTRIP---KFGRDMKYHKPSCD-LYLVGSGS 155 (703)
T ss_pred eeee--ecccccceeEEEecc--chhhheEeecCceeeehhhc-Cee-eeeecC---cCCccccccCCCcc-EEEeecCc
Confidence 4332 222333 33333443 55556666667666554321 111 111111 22345666544423 45555667
Q ss_pred cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCC
Q 011160 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (492)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (492)
.|+-++++.|..+..+.. ....++++..++- ..+|++|+.+|.|..||.+.......+.....+.
T Consensus 156 evYRlNLEqGrfL~P~~~----------~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~---- 220 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFET----------DSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN---- 220 (703)
T ss_pred ceEEEEcccccccccccc----------ccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccC----
Confidence 899999999998887764 4457999999998 5699999999999999999988766654433211
Q ss_pred CCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccC
Q 011160 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (492)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (492)
..........|+++.|+.+|-.+++|+ .|.+.|||+++. .
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~---------------------------------------~ 261 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS---------------------------------------K 261 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC---------------------------------------C
Confidence 111122234699999999999999988 789999999974 2
Q ss_pred CceeeccccceeeeeEEeecCCC-cEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEE
Q 011160 333 PQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411 (492)
Q Consensus 333 ~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 411 (492)
......|.....|..+.|...++ ..|++ .+...++|||-.+|+....+..-. .++.+|+-|++.++.++-.++.+..
T Consensus 262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 262 PLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCccee
Confidence 23345566666688888833333 34444 456789999999999998887544 4999999999999999988877666
Q ss_pred ecc
Q 011160 412 LTP 414 (492)
Q Consensus 412 w~~ 414 (492)
|=+
T Consensus 340 yyi 342 (703)
T KOG2321|consen 340 YYI 342 (703)
T ss_pred EEc
Confidence 533
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.8e-19 Score=148.11 Aligned_cols=199 Identities=16% Similarity=0.148 Sum_probs=152.5
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.++|+.+|..++||+.||++|||++..-..+ .....|.+.|.++.|+|||++|++-+.|
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------------l~e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------------LEEIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhh---------------------hhhHhhcCccccceeCCCCcEEEEecCC
Confidence 3678999999999999999999997655544 4567899999999999999999999999
Q ss_pred CeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCC---ceE--EeecCCCcEEEEecccCCee---eeEEeecCCCce
Q 011160 83 RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDD---RSI--VTCAADGQVRHAQILERGGV---ETKLLGKHQGRA 153 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~---~~l--~~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v 153 (492)
..+||+++++..+.... .........++|+. ++ .++ +....-+.|+.|++.....- ...........|
T Consensus 208 -~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI 284 (398)
T ss_pred -ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence 89999999997665552 23334566788887 55 222 23344567777776543331 111112233579
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEec
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~ 233 (492)
++++.+++| ++++.|+.||.|.|++..+.+..+..+.. |...|+.+.|+|+ .+.+++.+.+....+..+
T Consensus 285 Ssl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~~vk~a---------H~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 285 SSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQYVKEA---------HLGFVTGLTFSPD-SRYLASVSSDNEAAVTKL 353 (398)
T ss_pred eeEEEcCCC-cEEEEeccCCcEEEEEeceeeeeEeehhh---------heeeeeeEEEcCC-cCcccccccCCceeEEEE
Confidence 999999999 68999999999999999888877665422 6778999999998 788999999999998887
Q ss_pred ccc
Q 011160 234 RKY 236 (492)
Q Consensus 234 ~~~ 236 (492)
...
T Consensus 354 ~vd 356 (398)
T KOG0771|consen 354 AVD 356 (398)
T ss_pred eec
Confidence 653
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=5.1e-17 Score=132.73 Aligned_cols=265 Identities=12% Similarity=0.130 Sum_probs=187.3
Q ss_pred cCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC-eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeC-
Q 011160 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL- 180 (492)
Q Consensus 103 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~- 180 (492)
...+|+|.+|++ +...++++.....|.||...... ......+..|...|+.|.|.|..+ .|++|+.|..-++|..
T Consensus 9 ~~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecC--CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccccC
Confidence 356899999999 99999999999999999998777 566677999999999999999994 6899999999999998
Q ss_pred CCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCc
Q 011160 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (492)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (492)
..++....+.... .....+++.|+|. .+.|++|+.-..|.+|-++... .-..-+++...+
T Consensus 86 ~~~~WkptlvLlR--------iNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~EN-----------dWWVsKhikkPi 145 (361)
T KOG1523|consen 86 SGGTWKPTLVLLR--------INRAATCVKWSPK-ENKFAVGSGARLISVCYYEQEN-----------DWWVSKHIKKPI 145 (361)
T ss_pred CCCeeccceeEEE--------eccceeeEeecCc-CceEEeccCccEEEEEEEeccc-----------ceehhhhhCCcc
Confidence 4454444333221 5557899999997 7899999999999999887542 111223344556
Q ss_pred ccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc
Q 011160 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (492)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (492)
...|.++.|+|++-+|++|+ |++.++|..--..........|-+.. ..-...+..+.
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk--------------------~PFG~lm~E~~-- 203 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSK--------------------MPFGQLMSEAS-- 203 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccC--------------------CcHHHHHHhhc--
Confidence 78899999999999999998 77888886532211111010010000 00012223332
Q ss_pred ccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe-eeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 340 ~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
.....+..+.| +|+|..|+-.+.|+++.+-|..... .+..+....-+..++.|-.+. .++.++.|..=.++..
T Consensus 204 ~~ggwvh~v~f-s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 204 SSGGWVHGVLF-SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDCGPVLFVT 277 (361)
T ss_pred cCCCceeeeEe-CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCCCceEEEe
Confidence 22334899998 9999999999999999999986664 344443333567777776554 4555666654444443
No 208
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.4e-18 Score=145.54 Aligned_cols=306 Identities=17% Similarity=0.214 Sum_probs=214.9
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC--CCEEEEe
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISG 79 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~ 79 (492)
..|.|+..|..|++|+.|..|.+||+..++... .-..||...|....|-|. .+.|+++
T Consensus 146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l--------------------~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL--------------------SFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred ceeeecccCceeeccCccceEEeehhhccCccc--------------------ccccccccchhhhhccCCCCCcCceec
Confidence 457789999999999999999999999877652 334589999999999884 4789999
Q ss_pred cCCCeEEEEECCC-Ccee-eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEee-cCCC---ce
Q 011160 80 SDDRRVILWDWKT-ERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQG---RA 153 (492)
Q Consensus 80 ~~d~~i~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~~---~v 153 (492)
+.||.|++=.+.. +... ...+..|.++|..++.-|. ....|.+++.|+.+.-+|++........... .+.. ..
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred cccCceeeeeeccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence 9999999876543 3322 1223679999999999994 4567899999999999999877654332222 2223 46
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc------ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCe
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT------ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (492)
..++..|..++.+++++.|..+++||.+.-... ..+..+.... .....|++++|+.+++ -+++...|-.
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~----d~~v~ITgl~Ysh~~s-ElLaSYnDe~ 359 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE----DDPVNITGLVYSHDGS-ELLASYNDED 359 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc----cCcccceeEEecCCcc-ceeeeecccc
Confidence 789999999889999999999999998754332 2221111111 2456799999998754 4555567778
Q ss_pred EEEEecccccccCCCCCCCCccccCCCCcCCCcc--cceEEEEEc-CCCCeeEeecC-CcEEEEecCCCCCCCCCCCCCC
Q 011160 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ--VGITGLAFS-DQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPV 303 (492)
Q Consensus 228 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s-~~~~~l~~~~~-~~i~~~d~~~~~~~~~~~~~~~ 303 (492)
|+++.-..+.-.... ...+... ..+....+|. ..|.++-|- |...|+++|+| |.|.+|+-.++
T Consensus 360 IYLF~~~~~~G~~p~-~~s~~~~-~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~----------- 426 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPD-PSSPREQ-YVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG----------- 426 (559)
T ss_pred eEEeccccccCCCCC-CCcchhh-ccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-----------
Confidence 999944333211110 0011111 1222233332 346777654 78899999996 58999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
+.++.+.+-..- |+|+.- +|.-..||+.+-|..|+||--.+.+
T Consensus 427 ---------------------------eii~~MegDr~V--VNCLEp-HP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 427 ---------------------------EIIRFMEGDRHV--VNCLEP-HPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ---------------------------HHHHHhhcccce--EeccCC-CCCCchhhccCCccceeeecCCccc
Confidence 455556665553 899987 9999999999999999999864443
No 209
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=4.5e-17 Score=133.52 Aligned_cols=332 Identities=14% Similarity=0.203 Sum_probs=202.1
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeeeeE
Q 011160 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETK 144 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~ 144 (492)
-++|||+|+++|+++.- .+.|-|.++-+..+-+. --..|..+.|.. +..+++ ....++.|.+|++...+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~ck- 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYCK- 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeec--cceeeeeeeeccceEEEEEeecceeEEE-
Confidence 46899999999999876 78888888777654442 245678889987 766655 456788999999988877665
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (492)
+......+.+++|+|+|.++|.+...+-.|.+|.+.+.+....-- ....+..++|+|+ +++.+..+.
T Consensus 87 -Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-----------pK~~~kg~~f~~d-g~f~ai~sR 153 (447)
T KOG4497|consen 87 -IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-----------PKTNVKGYAFHPD-GQFCAILSR 153 (447)
T ss_pred -eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-----------cccCceeEEECCC-Cceeeeeec
Confidence 667778899999999998889999999999999999877543321 2224577888887 566665543
Q ss_pred CCe---EEE-----------EecccccccCCCCCC----------CCccccCCCCcCCCcccceEEEEEcCCCCeeEeec
Q 011160 225 DEY---TRL-----------YDIRKYKWDGSTDFG----------QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 225 dg~---v~i-----------~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
-.. +.| +++.+..+.+. ... .+.+. ....-+..-.+..++|+|.+++|+.|+
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~Dltgi-eWsPdg~~laVwd~~Ley---kv~aYe~~lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGI-EWSPDGNWLAVWDNVLEY---KVYAYERGLGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCc-eECCCCcEEEEecchhhh---eeeeeeeccceeEEEeccccceEEeec
Confidence 211 111 11111110000 000 00000 000111235688899999999999999
Q ss_pred -CCcEEEEecCCCCCCCCCCC-----CCC------------CccccccccCCCCCCCCC-CCC------C----CCcccc
Q 011160 281 -DEFIYLFTQDMGLGPNPPPS-----SPV------------STRSEASEMGSDHTSAAS-PST------A----NTDVRI 331 (492)
Q Consensus 281 -~~~i~~~d~~~~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~-~~~------~----~~~~~~ 331 (492)
|+.+++.+--+-+....+-. .|. ........+.|....... ... . .....+
T Consensus 230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 55677655433221111110 000 000000111111000000 000 0 000011
Q ss_pred CCceeeccccceeeeeEEeecCCCcEEEEeecc--CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCE
Q 011160 332 APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC--GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (492)
Q Consensus 332 ~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 409 (492)
+...+... ...+--++| ++|..|+|+-.+. ..+.+||+...++...+. ...+|....|.|....|+.+.....+
T Consensus 310 p~tD~pnP--k~g~g~laf-s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srL 385 (447)
T KOG4497|consen 310 PPTDFPNP--KCGAGKLAF-SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRL 385 (447)
T ss_pred CCCCCCCc--ccccceeee-cCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceE
Confidence 11111111 122667888 9999999987644 689999998887766664 34579999999999988888777889
Q ss_pred EEeccCCCCCCcccC
Q 011160 410 KILTPNAADRATLPT 424 (492)
Q Consensus 410 ~iw~~~~~~~~~~~~ 424 (492)
++|.+........+.
T Consensus 386 Y~W~psg~~~V~vP~ 400 (447)
T KOG4497|consen 386 YFWAPSGPRVVGVPK 400 (447)
T ss_pred EEEcCCCceEEecCC
Confidence 999998865554433
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.3e-17 Score=138.37 Aligned_cols=259 Identities=18% Similarity=0.261 Sum_probs=179.4
Q ss_pred ccceEEEEEEcCCC--CEEEEecCCCeEEEEECCCCceeeee-----ccCcCcceEEEEecCCCCCceEEeecCCCcEEE
Q 011160 60 HRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERVKLSF-----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (492)
Q Consensus 60 h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 132 (492)
-...|+.++|.-++ +.|...+.+..+..+.+......... ......+|..++.. ...|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~----dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA----DGTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc----CCEEEEEecCCcEEE
Confidence 34678888887654 45555557777877777766554332 23455677777764 346788888999999
Q ss_pred EecccCC--eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC--CcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 133 AQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 133 w~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
|....+. ......+..+ ..+..|.-++..++++++|+.. ..+.+||+++.+.+..-+..+.... +..-...++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L-~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL-GLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc-cceeeeeecc
Confidence 9987443 1111113323 5677788888888888889998 8899999998855544332221111 1112334455
Q ss_pred EEEcCC-CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEE
Q 011160 209 IAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (492)
Q Consensus 209 ~~~~p~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~ 287 (492)
+.|-|. ....|++++.-+.+++||.+.++ .+|.++.|
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR------------------------RPV~~fd~------------------ 245 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQR------------------------RPVAQFDF------------------ 245 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccC------------------------cceeEecc------------------
Confidence 566542 13456666666666666665432 23333333
Q ss_pred ecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeE
Q 011160 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (492)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i 367 (492)
..+. ++++.. .|+|++|++|..-|.+
T Consensus 246 ---------------------------------------------------~E~~--is~~~l-~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 246 ---------------------------------------------------LENP--ISSTGL-TPSGNFIYTGNTKGQL 271 (412)
T ss_pred ---------------------------------------------------ccCc--ceeeee-cCCCcEEEEecccchh
Confidence 2222 677777 8999999999999999
Q ss_pred EEEecCCCeeeEE-EecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 368 FIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 368 ~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
..||+..+++... +.+-.+.|+++..+|..++||++|.|..|||+|+.+.++.
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999999998876 8889999999999999999999999999999999996554
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=2.4e-17 Score=143.75 Aligned_cols=208 Identities=16% Similarity=0.239 Sum_probs=157.8
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCce
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v 153 (492)
..|+.++.||.+.|-+ ..++....+ ..|.+.+.+-+|+| +|.-|++++.||.|++|.-. +-. ...+.....+|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSrs-GML--RStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSRS-GML--RSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCC--CCceeeeecCCceEEEEecc-chH--HHHHhhcCcee
Confidence 5678888999999887 456655555 78999999999999 99999999999999999843 222 22255667899
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEec
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~ 233 (492)
.|++|.|++.+++++.+ +.+.|=-+.....+-..+. |.+-|.++.|+|. .+++++|++|-..++||-
T Consensus 149 ~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkA----------HDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRA----------HDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDA 215 (737)
T ss_pred EEEEECCCCCceEEecC--CeEEEeecccccceeEEec----------cCcEEEEeecCcc-ccceeecCCceeEEeecc
Confidence 99999999977777665 4555555544433333332 6678999999998 789999999999999997
Q ss_pred ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccC
Q 011160 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (492)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (492)
.... ......|+.+|++++|+|+ +.++.++-+++++=..+.
T Consensus 216 ~G~~----------------Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~---------------------- 256 (737)
T KOG1524|consen 216 QGAN----------------LFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV---------------------- 256 (737)
T ss_pred cCcc----------------cccCChhccceeeeeeccc-cceeeeeeeeeeecCCCc----------------------
Confidence 6532 2234457889999999999 777777766665322221
Q ss_pred CCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
+ .|..++| |+||..+++|...|.+.+=
T Consensus 257 ---------------------------G--SifnlsW-S~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 257 ---------------------------G--SIFNLSW-SADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------------------------c--ceEEEEE-cCCCceeeccccCceEEEe
Confidence 1 2889998 9999999999999987654
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=145.15 Aligned_cols=203 Identities=13% Similarity=0.237 Sum_probs=153.5
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~ 90 (492)
..++.++.||.+.|-+-. |++. +...+|.+.|.+-.|+|||.-|+|++.||.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE---------------------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS- 132 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVE---------------------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS- 132 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhh---------------------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-
Confidence 447888889999988865 6555 56789999999999999999999999999999999
Q ss_pred CCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc
Q 011160 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
.+|-...++ .....+|+|++|.| +.+.++.+.. +.+.|=.+.....+.. ...|.+-|.++.|++.+ .++++|+
T Consensus 133 rsGMLRStl-~Q~~~~v~c~~W~p--~S~~vl~c~g-~h~~IKpL~~n~k~i~--WkAHDGiiL~~~W~~~s-~lI~sgG 205 (737)
T KOG1524|consen 133 RSGMLRSTV-VQNEESIRCARWAP--NSNSIVFCQG-GHISIKPLAANSKIIR--WRAHDGLVLSLSWSTQS-NIIASGG 205 (737)
T ss_pred ccchHHHHH-hhcCceeEEEEECC--CCCceEEecC-CeEEEeecccccceeE--EeccCcEEEEeecCccc-cceeecC
Confidence 455543333 56677999999999 7666665543 4566655555444443 88999999999999998 6999999
Q ss_pred CCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccc
Q 011160 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (492)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 250 (492)
.|-..++||-.... +..-.. +..+|++++|.|+ ..++.++. .++++=.
T Consensus 206 ED~kfKvWD~~G~~-Lf~S~~----------~ey~ITSva~npd--~~~~v~S~-nt~R~~~------------------ 253 (737)
T KOG1524|consen 206 EDFRFKIWDAQGAN-LFTSAA----------EEYAITSVAFNPE--KDYLLWSY-NTARFSS------------------ 253 (737)
T ss_pred CceeEEeecccCcc-cccCCh----------hccceeeeeeccc--cceeeeee-eeeeecC------------------
Confidence 99999999965433 222111 5668999999997 46666654 3344211
Q ss_pred cCCCCcCCCcccceEEEEEcCCCCeeEeec-CCc
Q 011160 251 FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (492)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~ 283 (492)
...+.|..++||+||..+++|+ .|.
T Consensus 254 --------p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 254 --------PRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred --------CCccceEEEEEcCCCceeeccccCce
Confidence 1346799999999999998887 454
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=4.1e-18 Score=145.84 Aligned_cols=271 Identities=15% Similarity=0.206 Sum_probs=207.2
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCe
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (492)
-|+.+|+.++.|+..|.|-.+|+.++++. ..+. -...|.++.|-.+.+++|++-. ..
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y 192 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------FEIN-VMETVRDVTFLHNEQFFAVAQK-KY 192 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceee---------------------eeee-hhhhhhhhhhhcchHHHHhhhh-ce
Confidence 46789999999999999999999998876 3332 2567889999988899998865 67
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCc
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
+.||| ..|..+.++ ..| ..|..+.|.| .--+|++++..|.++.-|+.+++.+.. +....+.+..|+-+|-+ -
T Consensus 193 ~yvYD-~~GtElHCl-k~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~~G~~~vm~qNP~N-a 264 (545)
T KOG1272|consen 193 VYVYD-NNGTELHCL-KRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVAS--IRTGAGRTDVMKQNPYN-A 264 (545)
T ss_pred EEEec-CCCcEEeeh-hhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHH--HHccCCccchhhcCCcc-c
Confidence 99999 557777877 444 5799999999 777888999999999999999988766 66667788889999988 4
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
++-+|...|+|.+|.....+++..+.+ |.++|.++++.+. |.+++|.+.|..++|||+++.....+.
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLc----------H~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~-- 331 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILC----------HRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTY-- 331 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHh----------cCCCcceEEECCC-CcEEeecccccceeEeeecccccccee--
Confidence 888999999999999999988877766 6779999999997 899999999999999999987532221
Q ss_pred CCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
.. ..+...+++|..| +||.+..+.+.+|.-.....
T Consensus 332 ------------~t--p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s------------------------------ 366 (545)
T KOG1272|consen 332 ------------RT--PHPASNLSLSQKG-LLALSYGDHVQIWKDALKGS------------------------------ 366 (545)
T ss_pred ------------ec--CCCcccccccccc-ceeeecCCeeeeehhhhcCC------------------------------
Confidence 11 2345667777665 56666677899995322100
Q ss_pred CCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
......+..|.....|..+.| .|-...|-.|-..|.-.|.
T Consensus 367 -----~~~~~pYm~H~~~~~V~~l~F-cP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 367 -----GHGETPYMNHRCGGPVEDLRF-CPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred -----CCCCcchhhhccCccccccee-ccHHHeeeccccCCceeEe
Confidence 011233444554445888888 8877777776665543333
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.5e-17 Score=140.92 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=150.2
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeE
Q 011160 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (492)
Q Consensus 65 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 144 (492)
.+++|+++|..|++|+.||++|||++.....+... ..|...|.++.|+| |++.|++.+.| ..+||+..++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCC--CCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999998877776665 67889999999999 99999999999 8999999998666543
Q ss_pred EeecCCCceEEEEEcCCC---CcEEEE-EcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 145 LLGKHQGRAHKLAIEPGS---PHVFYT-CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~---~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
.-.........+.|+.++ ..++++ ...-+.|+.|++.....-..++...... ....|.+++.+++ |++++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-----~~~siSsl~VS~d-Gkf~A 297 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-----RFKSISSLAVSDD-GKFLA 297 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-----ccCcceeEEEcCC-CcEEE
Confidence 323334455677777665 222222 3344567776665433211111111100 2336899999998 89999
Q ss_pred EecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCC
Q 011160 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 221 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (492)
.|+.+|.|.|++..+.+. .......|...|+.+.|+|+.+++++.+ +..+.+..+..
T Consensus 298 lGT~dGsVai~~~~~lq~--------------~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQR--------------LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceeee--------------eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999987663 3445566888999999999999998877 44666666544
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=8e-17 Score=149.89 Aligned_cols=211 Identities=11% Similarity=0.094 Sum_probs=139.5
Q ss_pred cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC---CeEEEEECCCCce
Q 011160 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERV 95 (492)
Q Consensus 19 dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~ 95 (492)
+..|++||.. |... +.+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++.
T Consensus 183 ~~~i~i~d~d-g~~~---------------------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~ 240 (429)
T PRK01742 183 PYEVRVADYD-GFNQ---------------------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR 240 (429)
T ss_pred eEEEEEECCC-CCCc---------------------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce
Confidence 4789999987 3323 4566788899999999999999987653 4799999988764
Q ss_pred eeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEEE--ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC
Q 011160 96 KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHA--QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (492)
Q Consensus 96 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw--~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 172 (492)
.. + ....+....++|+| +|+.|+.++ .+|.+.|| |+.++.. . .+..+...+....|+|+|..+++++..+
T Consensus 241 ~~-l-~~~~g~~~~~~wSP--DG~~La~~~~~~g~~~Iy~~d~~~~~~-~--~lt~~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 241 KV-V-ASFRGHNGAPAFSP--DGSRLAFASSKDGVLNIYVMGANGGTP-S--QLTSGAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred EE-E-ecCCCccCceeECC--CCCEEEEEEecCCcEEEEEEECCCCCe-E--eeccCCCCcCCEEECCCCCEEEEEECCC
Confidence 22 1 11222344689999 999888764 67876666 4444432 2 2555667788999999996555566677
Q ss_pred CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccC
Q 011160 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (492)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 252 (492)
|...||++........... +.. ....|+|+ ++.|+..+.++ +.+||+.+++....
T Consensus 314 g~~~I~~~~~~~~~~~~l~----------~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~l----------- 368 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVG----------GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVL----------- 368 (429)
T ss_pred CCceEEEEECCCCCeEEec----------CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEe-----------
Confidence 8888887754322111110 111 34689998 66777766654 56699987642110
Q ss_pred CCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec
Q 011160 253 PPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (492)
Q Consensus 253 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (492)
... .....+.|+|+|++|+.++ ++.+.+|.+
T Consensus 369 ----t~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 369 ----SST--FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ----cCC--CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 000 1124578999999998877 566666665
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.3e-15 Score=126.78 Aligned_cols=307 Identities=11% Similarity=0.063 Sum_probs=192.6
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
.-.+..++|++.-..+|++..|-.|++|+-.. .....+.......|++++|-|. .++.|+.|+.. -|.+|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl-saselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL-SASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC-Ccceeeeeecc-eeEEEEcCcccc
Confidence 45678899999777789999999999999665 4444554456678999999995 45677788765 478997653211
Q ss_pred e------------eeEEeecCCCceEEEEEcCCCCcEEEEEc-CCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 141 V------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 141 ~------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
. ......+| .+|++|.|.+||. .+++++ .+..|.|||..++..+..... ..+.+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~----------glgg~s 242 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPK----------GLGGFS 242 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccccc----------CCCcee
Confidence 1 11112344 6899999999995 566665 457899999999987765522 344688
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~ 287 (492)
-+.|+|+ +.+|++++-|+..++|...+.... ..-. -..+.|....|+|+|++|.....+.-++|
T Consensus 243 lLkwSPd-gd~lfaAt~davfrlw~e~q~wt~-------------erw~--lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 243 LLKWSPD-GDVLFAATCDAVFRLWQENQSWTK-------------ERWI--LGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred eEEEcCC-CCEEEEecccceeeeehhccccee-------------ccee--ccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 8999999 688889999999999965543211 1111 12448999999999999888777776677
Q ss_pred ecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccc-cceeeeeEEeecCCCcEEEEeecc--
Q 011160 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-NCVTVKGVNFFGPKCEYVVSGSDC-- 364 (492)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~s~~g~~l~sg~~d-- 364 (492)
.+.-......+.. +...+... ... .........+.. -...+.+++| +|.|.+||+.-..
T Consensus 307 sl~f~~~~~~~~~-~~~~k~~l------------lia----DL~e~ti~ag~~l~cgeaq~law-DpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 307 SLTFDGEDSVFLR-PQSIKRVL------------LIA----DLQEVTICAGQRLCCGEAQCLAW-DPSGEYLAVIFKGQS 368 (445)
T ss_pred EEeecCCCccccC-cccceeee------------eec----cchhhhhhcCcccccCccceeeE-CCCCCEEEEEEcCCc
Confidence 6654322222111 00000000 000 011111111110 0123678998 9999999986543
Q ss_pred ------CeEEEEecCCCeeeEEE-ecC--CceeEEEeecC---CCCeEEEeeCCCCEEEeccCC
Q 011160 365 ------GRIFIWKKKGGELIRVI-EAD--RHVVNCIEPHP---HSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 365 ------g~i~iwd~~~~~~~~~~-~~h--~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+.|.+||....-.+.-. -+. ......++|+| ++.+|..+=..|.+.-|.+.-
T Consensus 369 ~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred hhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 34777877544333221 111 11245566665 455666665567777776643
No 217
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.5e-15 Score=133.59 Aligned_cols=316 Identities=11% Similarity=0.125 Sum_probs=205.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEe---
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG--- 79 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--- 79 (492)
.++++++|+++|.+. +..|+|++..++..+ .+.. ...++++.|+|.|.+|.|=
T Consensus 39 v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---------------------lt~~--~~~~~~L~fSP~g~yL~T~e~~ 94 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---------------------LCVE--LKKTYDLLFSPKGNYLLTWEPW 94 (566)
T ss_pred eEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---------------------EEec--cceeeeeeeccccccccccccc
Confidence 567888888888877 568999998876533 1111 1278899999999998752
Q ss_pred --cC-----CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 80 --SD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 80 --~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
.. ...+++|+++++.....+....... +++.|++ |..+.+ =-..+.+.+|++.....+. -.-|...
T Consensus 95 ~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~--dEsl~a-rlv~nev~f~~~~~f~~~~---~kl~~~~ 167 (566)
T KOG2315|consen 95 AIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI--DESLAA-RLVSNEVQFYDLGSFKTIQ---HKLSVSG 167 (566)
T ss_pred ccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc--chhhhh-hhhcceEEEEecCCcccee---eeeeccc
Confidence 11 2457899999965544443223332 6889987 655433 2335689999987744433 2335678
Q ss_pred eEEEEEcCCC-CcEEEE-----EcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC--
Q 011160 153 AHKLAIEPGS-PHVFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-- 224 (492)
Q Consensus 153 v~~i~~~~~~-~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-- 224 (492)
|+.+.++|.. +..+++ .|.-+.|+||..........+..... ....-..+.|++.+..+|+.++.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-------Fkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-------FKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-------cccceeEEEeccCCceEEEEEEEee
Confidence 9999999983 333332 34556799998763332222211111 11223467788765445544332
Q ss_pred ---------CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec---CCcEEEEecCCC
Q 011160 225 ---------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMG 292 (492)
Q Consensus 225 ---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~ 292 (492)
..+++++++..... .+.....++|.++.|+|+++-++++. --++.+||++..
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~----------------~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESV----------------SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred cCCCccccccceEEEEEecCceE----------------EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 23566666662211 11222468999999999997665544 237999998752
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc---CeEEE
Q 011160 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFI 369 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d---g~i~i 369 (492)
.+..+.. ++ -+.+-| +|.|++|+.++.+ |.+-|
T Consensus 305 ---------------------------------------~v~df~e--gp--RN~~~f-np~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 305 ---------------------------------------PVFDFPE--GP--RNTAFF-NPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred ---------------------------------------EeEeCCC--CC--ccceEE-CCCCCEEEEeecCCCCCceEE
Confidence 2222211 11 244555 9999999877654 89999
Q ss_pred EecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeC------CCCEEEeccCCCC
Q 011160 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAAD 418 (492)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~ 418 (492)
||+.+.+++..+.... -+-+.|+|||++|+|+.. |+.++||+.....
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 9999999998887654 356899999999998865 6899999997653
No 218
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-16 Score=130.77 Aligned_cols=271 Identities=16% Similarity=0.255 Sum_probs=180.1
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce----eeeeccCc------------CcceEEEEecCCCCCceEEee
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGH------------NDNVFQAKIMPFTDDRSIVTC 124 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~ 124 (492)
..-|.++.|...|.+||||..+|.|.++.-..... ..+....| ...|..++|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46788999999999999999999999996442221 12222233 246889999985555677788
Q ss_pred cCCCcEEEEecccCCeee----------------------------------eEEeecCCCceEEEEEcCCCCcEEEEEc
Q 011160 125 AADGQVRHAQILERGGVE----------------------------------TKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 125 ~~dg~v~iw~~~~~~~~~----------------------------------~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
+.|.+|++|.+....... ...-..|+..|++|+++.|+. .+++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lS-A 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLS-A 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEee-c
Confidence 889999999986532211 001135888899999999984 5454 4
Q ss_pred CCCcEEEEeCCCCCcccee-ecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC--CCCCC
Q 011160 171 EDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST--DFGQP 247 (492)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~--~~~~~ 247 (492)
.|=.|.+|+++-......+ ...+... +. -..-|++..|+|..-++|+-.+..|+|++.|+|...+.... .+..|
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nm-Ee--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANM-EE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCH-HH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 6778999998754332222 1111100 00 12357889999987788999999999999999965432110 11111
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (492)
... .....+..--..|..+.|+++|+++++-.--++++||+...
T Consensus 260 edp-~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme----------------------------------- 303 (433)
T KOG1354|consen 260 EDP-SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME----------------------------------- 303 (433)
T ss_pred cCC-cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc-----------------------------------
Confidence 111 11222233346788999999999999988889999999754
Q ss_pred ccccCCceeeccccc-------------eeeeeEEeecCCCcEEEEeeccCeEEEEecCCC
Q 011160 328 DVRIAPQVYKGHRNC-------------VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 328 ~~~~~~~~~~~~~~~-------------~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~ 375 (492)
.+++.+++-|... -.-..++| +-++.++++|+....++++++..|
T Consensus 304 --~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~-sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 304 --AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW-SGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred --CCcceEEeehHhHHHHHHHHhhccchhheeEEEE-cCCcceEecccccceEEEecCCCC
Confidence 2333344433210 01245666 888899999999999999996544
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-15 Score=125.88 Aligned_cols=237 Identities=11% Similarity=0.032 Sum_probs=152.1
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-CccceEEEEEEcCC-CCEEEEecCCC
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTD-GDILISGSDDR 83 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~-~~~l~s~~~d~ 83 (492)
+++---.+|++..|-+||+|+-.. ... ..++ .-+..|+|++|-|- +.-|+.|+..|
T Consensus 106 WhqH~~~fava~nddvVriy~kss-t~p---------------------t~Lks~sQrnvtclawRPlsaselavgCr~g 163 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRIYDKSS-TCP---------------------TKLKSVSQRNVTCLAWRPLSASELAVGCRAG 163 (445)
T ss_pred echhhhhhhhhccCcEEEEeccCC-CCC---------------------ceecchhhcceeEEEeccCCcceeeeeecce
Confidence 334333467788888999998774 333 2232 23568999999995 46788888765
Q ss_pred eEEEEECCCCceee-----------ee--ccCcCcceEEEEecCCCCCceEEeecC-CCcEEEEecccCCeeeeEEeecC
Q 011160 84 RVILWDWKTERVKL-----------SF--HSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKH 149 (492)
Q Consensus 84 ~i~iwd~~~~~~~~-----------~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~ 149 (492)
|.+|......... ++ ..+| .+|++|+|.+ ||..+++++. +..|.|||..++..+... ...
T Consensus 164 -IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~~g 237 (445)
T KOG2139|consen 164 -ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTGQKIPLI--PKG 237 (445)
T ss_pred -eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeecccCcceEEEEcCCCCCccccc--ccC
Confidence 9999865321100 01 1344 6899999999 9999999875 678999999998887653 334
Q ss_pred CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEE
Q 011160 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (492)
Q Consensus 150 ~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 229 (492)
.+.++-+.|+||+ .+|++++-|+..++|............. ..+.|...+|+|.|..+|++.+..-.++
T Consensus 238 lgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~l----------gsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 238 LGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWIL----------GSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceec----------cCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 5678899999999 5788999999999996544332222211 3347899999999666666666555444
Q ss_pred EEecccccccCCCCCCCCcccc--------CCCCcCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 230 LYDIRKYKWDGSTDFGQPADYF--------CPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
-...........- .+...... ....-..--.+.+.+++|.|.|.+||+.-.+
T Consensus 307 sl~f~~~~~~~~~-~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 307 SLTFDGEDSVFLR-PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred EEeecCCCccccC-cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 3332221111000 00000000 0000011124678999999999999987644
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=8.5e-15 Score=119.90 Aligned_cols=277 Identities=12% Similarity=0.149 Sum_probs=177.8
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcC--cceEEEEecCCCCCceEE-eecCC------CcEEEEe
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIV-TCAAD------GQVRHAQ 134 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~-~~~~d------g~v~iw~ 134 (492)
..+++|+.|..-++.|..+| .+||+++.-+....- ..+. -.+..|-| ..++|+ +|+.+ ..|.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLf----R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhh----hhceEEEecCCCCCCCCCceEEEEe
Confidence 44599999999999998877 899998753321111 1111 23333444 334544 34332 5799999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC-CCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
=....++.. + ....+|.++.+.++. +++. ..+.|++|... +.+.+..+.... .+..+.+++-+.
T Consensus 82 D~k~~~i~e--l-~f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~--------NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 82 DLKERCIIE--L-SFNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRS--------NPKGLCSLCPTS 146 (346)
T ss_pred cccCcEEEE--E-EeccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeeccc--------CCCceEeecCCC
Confidence 544455544 2 245789999999863 4444 35789999987 445554443221 112233333332
Q ss_pred CCCceEEE-ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCc-EEEEecC
Q 011160 214 RNANLFAV-AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYLFTQD 290 (492)
Q Consensus 214 ~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~-i~~~d~~ 290 (492)
. ..+|+. |-.-|.|+|-|+...+.. +......|...|.|++.+.+|.++|+++ .|+ |+|||..
T Consensus 147 ~-k~~LafPg~k~GqvQi~dL~~~~~~-------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 147 N-KSLLAFPGFKTGQVQIVDLASTKPN-------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred C-ceEEEcCCCccceEEEEEhhhcCcC-------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 2 334443 456799999999876521 2356677999999999999999999999 565 9999998
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
++. .+..++.......|.+++| ||++.+||++|+.|+|+||
T Consensus 213 ~g~--------------------------------------~l~E~RRG~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 213 DGT--------------------------------------LLQELRRGVDRADIYCIAF-SPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred CCc--------------------------------------EeeeeecCCchheEEEEEe-CCCccEEEEEcCCCeEEEE
Confidence 853 3444444444445999999 9999999999999999999
Q ss_pred ecCCCeeeE------------------------EEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 371 KKKGGELIR------------------------VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 371 d~~~~~~~~------------------------~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
.+.....-. .+.-..+...-++|..+.+.++..+.||+.+=+.+
T Consensus 254 ~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 254 SLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred EeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 886422111 11112334455666666555666666776554433
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.6e-15 Score=138.47 Aligned_cols=235 Identities=12% Similarity=0.100 Sum_probs=153.2
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec---CCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA---ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
..|.+||...... ..+ ..+...+...+|+| +|+.|+..+ .+..|.+|++.+++.... ......+...+|+
T Consensus 179 ~~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~l---~~~~~~~~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQV---ASFPRHNGAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCC-EEe-ecCCCceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEEc---cCCCCCcCCeEEC
Confidence 4799999875554 334 34667899999999 999888654 245799999987654432 2233345568999
Q ss_pred CCCCcEEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-CCCeEEEE--ecc
Q 011160 160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLY--DIR 234 (492)
Q Consensus 160 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~i~--d~~ 234 (492)
|+|..++++.+.+| .|++||+.+++...... ....+....|+|+ ++.|+..+ .++...+| ++.
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-----------~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-----------CCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECC
Confidence 99965555555555 48899998876543322 1224577899998 55565544 44444444 555
Q ss_pred cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C-C--cEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
+++.. .+ ...........|+|+|++|+..+ + + .|++||+.++..
T Consensus 320 ~g~~~---------------~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~---------------- 367 (429)
T PRK03629 320 GGAPQ---------------RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------- 367 (429)
T ss_pred CCCeE---------------Ee-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe----------------
Confidence 44311 01 01122345688999999887765 2 2 488889876421
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCe---EEEEecCCCeeeEEEecCCce
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR---IFIWKKKGGELIRVIEADRHV 387 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~---i~iwd~~~~~~~~~~~~h~~~ 387 (492)
..+..... .....| +|||++|+.++.++. ++++++ +|.....+.+|.+.
T Consensus 368 -----------------------~~Lt~~~~---~~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~ 419 (429)
T PRK03629 368 -----------------------QVLTDTFL---DETPSI-APNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ 419 (429)
T ss_pred -----------------------EEeCCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC
Confidence 11111111 234566 999999999887764 777777 67777788888888
Q ss_pred eEEEeecCC
Q 011160 388 VNCIEPHPH 396 (492)
Q Consensus 388 v~~~~~s~~ 396 (492)
+...+|+|-
T Consensus 420 ~~~p~Wsp~ 428 (429)
T PRK03629 420 VKFPAWSPY 428 (429)
T ss_pred cCCcccCCC
Confidence 999999983
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.1e-15 Score=142.53 Aligned_cols=234 Identities=10% Similarity=0.040 Sum_probs=151.5
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC---CCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
..|.+||..... ...+ ..+...+.+.+|+| +++.|+..+. ...|.+|++.++.... +........+.+|+
T Consensus 184 ~~l~i~D~~g~~-~~~l-t~~~~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYN-PQTI-LRSAEPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCC-ceEe-ecCCCccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceEC
Confidence 468999986444 3444 45667899999999 9999887763 3469999998766543 33334455678999
Q ss_pred CCCCcEEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-CCCe--EEEEecc
Q 011160 160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEY--TRLYDIR 234 (492)
Q Consensus 160 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--v~i~d~~ 234 (492)
|+|..++++.+.+| .|++||+.+++...... +.......+|+|+ ++.|+..+ .+|. |+++++.
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-----------~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-----------HFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-----------CCCCccceEECCC-CCEEEEEECCCCCceEEEEECC
Confidence 99976656666665 59999998876433221 1122456899998 55555544 4554 6666665
Q ss_pred cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC---cEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
+++... +. .........+|+|+|++|+..+ ++ .|.+|++.++..
T Consensus 325 ~g~~~~---------------lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---------------- 372 (433)
T PRK04922 325 GGSAER---------------LT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---------------- 372 (433)
T ss_pred CCCeEE---------------ee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe----------------
Confidence 543210 00 0112344689999999988754 22 499999876421
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc---CeEEEEecCCCeeeEEEecCCce
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHV 387 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~ 387 (492)
..+..... .....| +|||++|+..+.+ +.|+++++ ++.....+..+.+.
T Consensus 373 -----------------------~~Lt~~~~---~~~p~~-spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~~g~ 424 (433)
T PRK04922 373 -----------------------RTLTPGSL---DESPSF-APNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSADGE 424 (433)
T ss_pred -----------------------EECCCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccCCCC
Confidence 11111111 234566 9999988876653 46888888 45556667666677
Q ss_pred eEEEeecC
Q 011160 388 VNCIEPHP 395 (492)
Q Consensus 388 v~~~~~s~ 395 (492)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 88888987
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=1e-15 Score=133.82 Aligned_cols=254 Identities=15% Similarity=0.161 Sum_probs=168.5
Q ss_pred CCceEEeecCCCcEEEEecccCCe----eeeEEeecCCCceEEEEE-----cCCCCcEEEEEcCCCcEEEEeCCCCCccc
Q 011160 117 DDRSIVTCAADGQVRHAQILERGG----VETKLLGKHQGRAHKLAI-----EPGSPHVFYTCGEDGLVQHFDLRTGAATE 187 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~----~~~~~~~~~~~~v~~i~~-----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 187 (492)
.|++|+..-. ..+.+|+.+.... +....+.+. ..+|-.| .|.+ .-++.|-.-|.|.+.|....+...
T Consensus 134 ~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 134 KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred CCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCC-cceEEeeccCceEEecchhhHHHH
Confidence 5666654432 3578888764222 222222221 1222233 3444 346778888999999887744333
Q ss_pred eeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCC---C----------ccccCCC
Q 011160 188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ---P----------ADYFCPP 254 (492)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~----------~~~~~~~ 254 (492)
.+.. ..+..+..++++.|-|-+...++.+-.+|.+++||....--.....+.. + .....+.
T Consensus 210 lfne------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 210 LFNE------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhhh------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 3322 2222556899999999777888889999999999874321111100000 0 0000111
Q ss_pred CcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCC
Q 011160 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (492)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (492)
....-....|...+|+|||++||+.+ |+.++||+..+. ..+
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------------------------------------eLl 325 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------------------------------------ELL 325 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH--------------------------------------HHH
Confidence 11222345889999999999999999 778999999873 333
Q ss_pred ceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCC-----------------
Q 011160 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH----------------- 396 (492)
Q Consensus 334 ~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~----------------- 396 (492)
..++..-.. ..|++| ||||+||++|++|-.|.||.+...+.+..=++|...|+.++|.|-
T Consensus 326 g~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~ 402 (636)
T KOG2394|consen 326 GVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTF 402 (636)
T ss_pred HHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccc
Confidence 333333333 789999 999999999999999999999999999999999999999999830
Q ss_pred ------------------C-------------CeEEEeeCCCCEEEeccCCCCCCc
Q 011160 397 ------------------S-------------TVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 397 ------------------~-------------~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
+ -.|.++|.|..+.+||+....+..
T Consensus 403 ~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 403 SDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 0 146788999999999998755443
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=9e-17 Score=137.77 Aligned_cols=274 Identities=14% Similarity=0.177 Sum_probs=198.5
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 143 (492)
-+.+.++.+|++|+.|+..|.|-.+|+.++.....+ .-...|.++.|.. +.+++|++- ...+.|||-.. ..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LH--neq~~AVAQ-K~y~yvYD~~G-tEl-- 203 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLH--NEQFFAVAQ-KKYVYVYDNNG-TEL-- 203 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhc--chHHHHhhh-hceEEEecCCC-cEE--
Confidence 357889999999999999999999999999987777 3445789999987 777777665 56789998533 222
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
..+..| ..|..+.|.|.. .+|++++..|.++.-|+.+|+.+..+.. ..+.+..++-+|- ...+-+|.
T Consensus 204 HClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t----------~~G~~~vm~qNP~-NaVih~Gh 270 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRT----------GAGRTDVMKQNPY-NAVIHLGH 270 (545)
T ss_pred eehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHc----------cCCccchhhcCCc-cceEEEcC
Confidence 235444 578899999988 7899999999999999999999887764 3446778888997 46888999
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (492)
..|+|.+|.....+. ...+..|.++|.++++.++|+|+++.+ |..++|||+++-.
T Consensus 271 snGtVSlWSP~skeP---------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--------- 326 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEP---------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--------- 326 (545)
T ss_pred CCceEEecCCCCcch---------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---------
Confidence 999999999987652 233445889999999999999999988 6689999998742
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe-cCC--CeeeE
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK-KKG--GELIR 379 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd-~~~--~~~~~ 379 (492)
.+.++.. +.....+++ |..| +|| .+....|.||. .-. +..-.
T Consensus 327 -----------------------------ql~t~~t---p~~a~~ls~-Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~ 371 (545)
T KOG1272|consen 327 -----------------------------QLHTYRT---PHPASNLSL-SQKG-LLA-LSYGDHVQIWKDALKGSGHGET 371 (545)
T ss_pred -----------------------------ccceeec---CCCcccccc-cccc-cee-eecCCeeeeehhhhcCCCCCCc
Confidence 2222222 111456666 6554 344 34456799995 222 12222
Q ss_pred EEecC--CceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 380 VIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 380 ~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
.+..| .+.|..+.|.|-...|-.|-.-|.-.+-=+..|
T Consensus 372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred chhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 22233 357999999998776666655554444333333
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.2e-14 Score=119.06 Aligned_cols=241 Identities=14% Similarity=0.155 Sum_probs=163.5
Q ss_pred ceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC------CcEEEEe
Q 011160 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFD 179 (492)
Q Consensus 106 ~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~iwd 179 (492)
...+++|+. |...+++|..+| .+||+...-+......+....-.+.-|-|-.+ .+.++|+.+ ..|.|||
T Consensus 7 ~~lsvs~NQ--D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQ--DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEcc--CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEEEEe
Confidence 345589998 888888887766 69999865333222112111122333333322 344455443 4799999
Q ss_pred CCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCC
Q 011160 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIG 258 (492)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
=....++..+. ...+|.++.+.++ .|++. ..+.|++|.... .+..... ....
T Consensus 82 D~k~~~i~el~-----------f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~------------et~~ 134 (346)
T KOG2111|consen 82 DLKERCIIELS-----------FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVI------------ETRS 134 (346)
T ss_pred cccCcEEEEEE-----------eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeee------------eccc
Confidence 66666666665 4557999999975 44443 357899999873 3322110 0111
Q ss_pred CcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCcee
Q 011160 259 DEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (492)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (492)
....+.++.-..+..+||.-+ -|.|++-|+...+ ......+
T Consensus 135 -NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~------------------------------------~~~p~~I 177 (346)
T KOG2111|consen 135 -NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK------------------------------------PNAPSII 177 (346)
T ss_pred -CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC------------------------------------cCCceEE
Confidence 122344444334455666655 4679999987632 1245778
Q ss_pred eccccceeeeeEEeecCCCcEEEEeeccCe-EEEEecCCCeeeEEEecC--CceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 337 ~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
.+|.+. |.+++. ..+|.+||++|..|+ |||||..+|+++.+++-- ...|.+|+|||++.+||.+|.-|+|.|+.
T Consensus 178 ~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 178 NAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 899987 889998 999999999999997 899999999999998632 24699999999999999999999999999
Q ss_pred cCCCC
Q 011160 414 PNAAD 418 (492)
Q Consensus 414 ~~~~~ 418 (492)
+....
T Consensus 255 l~~~~ 259 (346)
T KOG2111|consen 255 LRDTE 259 (346)
T ss_pred eecCC
Confidence 97643
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.1e-15 Score=134.04 Aligned_cols=242 Identities=17% Similarity=0.239 Sum_probs=159.3
Q ss_pred cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC-CCcEEEEEcCCCcEEEEe
Q 011160 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYTCGEDGLVQHFD 179 (492)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~~~~dg~i~iwd 179 (492)
.||++.|+++.|+. +|.+|++|+.|-.+.|||.-..+... ..-.+|...|.++.|-|. +..++++|..|..|+++|
T Consensus 47 ~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllh-sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLH-SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceecceeecC--CCCEEeecCCcceEEeecchhcceee-eeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 79999999999999 99999999999999999997554443 346789999999999985 335788999999999999
Q ss_pred CCCCC----------ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCcc
Q 011160 180 LRTGA----------ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (492)
Q Consensus 180 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 249 (492)
+...+ ....+.+ |...|..++-.|.+++.+.++++||+++-+|++........
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~c----------ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~------- 186 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSC----------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD------- 186 (758)
T ss_pred cccccccccccCccchhhhhhh----------hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc-------
Confidence 98522 1222222 55678889999987899999999999999999974322110
Q ss_pred ccCCCCcC--CCcccceEEEEEcCCC-CeeEeecCC-cEEEEecCCCCCCCCC----CCCCCCccccccccCCCCCCCCC
Q 011160 250 YFCPPNLI--GDEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDMGLGPNPP----PSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 250 ~~~~~~~~--~~~~~~i~~~~~s~~~-~~l~~~~~~-~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
..++..+. ...--...++..+|.. .+|++|+.+ -.++||.+.......- ...|.........++|++-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---- 262 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---- 262 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----
Confidence 00111111 1112456889999965 567777755 7999996543221111 1111111111222222221
Q ss_pred CCCCCCccccCCceeecccc-c-eeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeE
Q 011160 322 PSTANTDVRIAPQVYKGHRN-C-VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~ 379 (492)
+..++... . ..++-+.| +|+|.-|...-..-.|+++|+..++...
T Consensus 263 ------------kn~~gn~~~~~~~~t~vtf-npNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 263 ------------KNSQGNLDRYITCCTYVTF-NPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ------------cCcccccccceeeeEEEEE-CCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 11111000 0 01455666 9999877666556689999998776543
No 227
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.70 E-value=2.4e-15 Score=124.27 Aligned_cols=253 Identities=15% Similarity=0.172 Sum_probs=182.0
Q ss_pred eeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE-CCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD-WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 128 (492)
+..+++.++||...|+....-|-..-+++.+.|.+++||- .+.++.-..+...-..+++++.+.+ +...|+.|-.+|
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ng 90 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNG 90 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecc
Confidence 4456688999999999999999888899999999999994 4455554555444566899999998 899999999999
Q ss_pred cEEEEecccC--CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 129 QVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 129 ~v~iw~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
++.-+.+... +....+....|...+..+-|+-.. ..+++.+.|..+.---.+.+..+..+.. ....
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----------~~~~ 158 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF-----------ETPA 158 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe-----------eccC
Confidence 9988876542 222233466799999999998766 5788888887776555555554433321 1111
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIY 285 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~ 285 (492)
+++.+.- . +...|...|.|.+..+..... .+.....+|...+.+++|.|..++|.++..+ .+.
T Consensus 159 t~~~~d~--~-~~fvGd~~gqvt~lr~~~~~~-------------~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 159 SALQFDA--L-YAFVGDHSGQITMLKLEQNGC-------------QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred CCCceee--E-EEEecccccceEEEEEeecCC-------------ceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 2222221 1 455566667776666543321 1334456788999999999999999999855 799
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
+||+... ......+.+|... |..+.+ -+--+.+.+++.||
T Consensus 223 ~wdigg~-------------------------------------~g~~~el~gh~~k--V~~l~~-~~~t~~l~S~~edg 262 (404)
T KOG1409|consen 223 MWDIGGR-------------------------------------KGTAYELQGHNDK--VQALSY-AQHTRQLISCGEDG 262 (404)
T ss_pred EEeccCC-------------------------------------cceeeeeccchhh--hhhhhh-hhhheeeeeccCCC
Confidence 9999764 2334566777776 777777 67778899999999
Q ss_pred eEEEEec
Q 011160 366 RIFIWKK 372 (492)
Q Consensus 366 ~i~iwd~ 372 (492)
.|.+|++
T Consensus 263 ~i~~w~m 269 (404)
T KOG1409|consen 263 GIVVWNM 269 (404)
T ss_pred eEEEEec
Confidence 9999997
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.3e-14 Score=132.29 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=147.9
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC---CcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
..|.+||.. +.....+ ..+...+.+.+|+| +++.|+..+.. ..|.+||+.++.... +......+...+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEEC
Confidence 467777864 4443444 45677899999999 99998876642 459999998776543 33334556789999
Q ss_pred CCCCcEEEEEcCCCcEEEEe--CCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE-EecCCCeEEEEecc--
Q 011160 160 PGSPHVFYTCGEDGLVQHFD--LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEYTRLYDIR-- 234 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~v~i~d~~-- 234 (492)
|+|..++++.+.+|...+|. +.++.. ..+.. +........|+|+ ++.|+ ++..+|...+|.+.
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~----------~~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ----------SSGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCc-EECCC----------CCCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEECC
Confidence 99976556777888766665 444432 22221 1123456789999 55555 44445666666653
Q ss_pred cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC---cEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
.++.. .+.. ........+|+|+|++|+..+ .+ .|++|++.++..
T Consensus 317 ~g~~~---------------~lt~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---------------- 364 (427)
T PRK02889 317 GGAAQ---------------RVTF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---------------- 364 (427)
T ss_pred CCceE---------------EEec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----------------
Confidence 32210 0000 112234578999999988765 32 599999876421
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC---eEEEEecCCCeeeEEEecCCce
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRHV 387 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~h~~~ 387 (492)
+.+..... .....| +|||++|+..+.++ .+++.++ ++.....+..+.+.
T Consensus 365 -----------------------~~lt~~~~---~~~p~~-spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~ 416 (427)
T PRK02889 365 -----------------------TALTDTTR---DESPSF-APNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGD 416 (427)
T ss_pred -----------------------EEccCCCC---ccCceE-CCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCC
Confidence 11111111 245677 99999998877554 4666666 56667777777778
Q ss_pred eEEEeecCC
Q 011160 388 VNCIEPHPH 396 (492)
Q Consensus 388 v~~~~~s~~ 396 (492)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 888999884
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=8.4e-14 Score=125.22 Aligned_cols=292 Identities=13% Similarity=0.071 Sum_probs=171.7
Q ss_pred EEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEE
Q 011160 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~ 155 (492)
+++-..++.|.+.|..+.+.+..+..++ ..-..+.|+| |++++++++.||.|.++|+.+.+.+.. +.. .....+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~--i~~-G~~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVAT--IKV-GGNPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEE--EE--SSEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEE--Eec-CCCcce
Confidence 3456678999999999999988884333 3345578999 999999999999999999999887665 332 345688
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 156 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
++++++|..++++....+.+.++|.++.+.+..+......... ....+.++..+|....++++.-..+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999755556668899999999999988877543221100 2335677888887444666666668888888766
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccC
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (492)
.+.... .............|+|++++++++. .+.|-++|..+++....+..
T Consensus 160 ~~~~~~--------------~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~------------- 212 (369)
T PF02239_consen 160 PKNLKV--------------TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT------------- 212 (369)
T ss_dssp SSCEEE--------------EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------------
T ss_pred ccccce--------------eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec-------------
Confidence 431110 0001123566789999999876654 55799999877422111000
Q ss_pred CCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEee
Q 011160 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (492)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (492)
........... ..|.....+... ...+...++.-....+.+|+..+.+.++++....+. .-+..
T Consensus 213 -----------g~~p~~~~~~~-~php~~g~vw~~---~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 213 -----------GKKPHPGPGAN-FPHPGFGPVWAT---SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp -----------SSSBEETTEEE-EEETTTEEEEEE---EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred -----------ccccccccccc-ccCCCcceEEee---ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 00000000000 012222122221 122333323333345668999999999999987666 77888
Q ss_pred cCCCCeEEEe----eCCCCEEEeccCCCCC
Q 011160 394 HPHSTVLASS----GIESDIKILTPNAADR 419 (492)
Q Consensus 394 s~~~~~l~s~----~~dg~i~iw~~~~~~~ 419 (492)
+|+++++... ...+.|.++|.++.+.
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 9999999887 4458999999988643
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=6.4e-14 Score=130.15 Aligned_cols=222 Identities=14% Similarity=0.127 Sum_probs=140.0
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc--CCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
.|.+||........ +..+...+.+.+|+|+|..++++.. .+..|.+|++.+++....... ....
T Consensus 180 ~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-----------~~~~ 245 (429)
T PRK03629 180 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----------PRHN 245 (429)
T ss_pred eEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-----------CCCc
Confidence 68888876544332 4446678999999999964433332 235799999988764433221 1123
Q ss_pred EEEEEcCCCCceEEEecCCC--eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--C
Q 011160 207 NAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~ 282 (492)
..+.|+|++..++++.+.+| .|++||+.+++... +. .+...+....|+|+|+.|+..++ +
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~---------------lt-~~~~~~~~~~wSPDG~~I~f~s~~~g 309 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ---------------VT-DGRSNNTEPTWFPDSQNLAYTSDQAG 309 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------cc-CCCCCcCceEECCCCCEEEEEeCCCC
Confidence 46899999443444445455 58889998764321 11 12335678899999998877663 2
Q ss_pred c--EEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE
Q 011160 283 F--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (492)
Q Consensus 283 ~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s 360 (492)
. |+++++.++. ...+..+... .....| +|||++|+.
T Consensus 310 ~~~Iy~~d~~~g~---------------------------------------~~~lt~~~~~--~~~~~~-SpDG~~Ia~ 347 (429)
T PRK03629 310 RPQVYKVNINGGA---------------------------------------PQRITWEGSQ--NQDADV-SSDGKFMVM 347 (429)
T ss_pred CceEEEEECCCCC---------------------------------------eEEeecCCCC--ccCEEE-CCCCCEEEE
Confidence 3 5555655431 1122222111 345666 999999987
Q ss_pred eecc---CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCC---EEEeccCCCCCCcccC
Q 011160 361 GSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD---IKILTPNAADRATLPT 424 (492)
Q Consensus 361 g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~---i~iw~~~~~~~~~~~~ 424 (492)
.+.+ ..|++||+.+++.. .+... .......|+|||++|+.++.++. +.+++++.+....+..
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred EEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 6543 36889999888643 34322 22456889999999999888764 7778887666655544
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=6.3e-14 Score=131.12 Aligned_cols=234 Identities=12% Similarity=0.132 Sum_probs=151.6
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC---CCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
..|.+||...... ..+ ..|...+.+.+|+| +|+.|+..+. +..|.+|++.++.... +..+...+...+|+
T Consensus 182 ~~l~~~d~dg~~~-~~l-t~~~~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANV-RYL-TDGSSLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCc-EEE-ecCCCCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEEC
Confidence 4788999764443 444 46778899999999 9998887653 4689999998775433 44556677889999
Q ss_pred CCCCcEEEEEcCCCc--EEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-CCC--eEEEEecc
Q 011160 160 PGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE--YTRLYDIR 234 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~v~i~d~~ 234 (492)
|+|..++++.+.++. |++||+.++....... +........|+|+ ++.|+..+ .+| .|+++|+.
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-----------~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-----------SPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceEEccC-----------CCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECC
Confidence 999766667666665 7777988776533221 1223456899998 56665544 333 57788876
Q ss_pred cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--C--cEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
.++.. .+. .....+....|+|+|++|+.... + .|.+|++.++.
T Consensus 323 g~~~~---------------~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----------------- 369 (435)
T PRK05137 323 GSNPR---------------RIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----------------- 369 (435)
T ss_pred CCCeE---------------Eee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-----------------
Confidence 54321 111 11234566889999999887652 2 47888875431
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc------CeEEEEecCCCeeeEEEecC
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC------GRIFIWKKKGGELIRVIEAD 384 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d------g~i~iwd~~~~~~~~~~~~h 384 (492)
.+.+... . .+....| +|||++|+..+.+ ..++++++..+.. ..+. .
T Consensus 370 ----------------------~~~lt~~-~--~~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~ 421 (435)
T PRK05137 370 ----------------------ERILTSG-F--LVEGPTW-APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-T 421 (435)
T ss_pred ----------------------eEeccCC-C--CCCCCeE-CCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-C
Confidence 1111111 1 1456777 9999998775543 3688888865544 4454 3
Q ss_pred CceeEEEeecCC
Q 011160 385 RHVVNCIEPHPH 396 (492)
Q Consensus 385 ~~~v~~~~~s~~ 396 (492)
.+.+...+|+|-
T Consensus 422 ~~~~~~p~Wsp~ 433 (435)
T PRK05137 422 PGDASDPAWSPL 433 (435)
T ss_pred CCCccCcccCCC
Confidence 445777888873
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=3e-15 Score=130.91 Aligned_cols=198 Identities=13% Similarity=0.156 Sum_probs=132.8
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC--CeeEeecCCcEEEEecCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGL 293 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~i~~~d~~~~~ 293 (492)
+.-++.|-.-|.|.+.|....+....+... ..-....++++.|-|.+ .+|++-.++.+++||.....
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~-----------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~ 253 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEE-----------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC 253 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhc-----------ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc
Confidence 556777888899999988764322111110 01124689999999954 56666779999999874321
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
.... ......+++...+...........++..+.--.. .|...+| +|||++||+.+.||.++|||..
T Consensus 254 ~~t~----------p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fd 320 (636)
T KOG2394|consen 254 GATA----------PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFD 320 (636)
T ss_pred cCCC----------CcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeecc
Confidence 1110 0111111122222111111111233333333333 3889998 9999999999999999999999
Q ss_pred CCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcccCcccccccccccccccccCch
Q 011160 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQFKPKATRWMHHVLSPE 444 (492)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (492)
+.+++..++..-+...+++|||||++|++||.|--|.||.+..++...--.. |..|+..|+|.+
T Consensus 321 t~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-------HkSWVs~VaFDp 384 (636)
T KOG2394|consen 321 TQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-------HKSWVSVVAFDP 384 (636)
T ss_pred HHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc-------cccceeeEeecc
Confidence 9999888887778899999999999999999999999999988765432111 678998888875
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=3.1e-14 Score=132.96 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=130.6
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecC---CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCC--
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADG-- 128 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg-- 128 (492)
+.+..|...+.+.+|+|||+.|+..+. ...|.+|++.+++... + ....+...+++|+| +|+.|+ +.+.+|
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~Sp--DG~~l~~~~s~~g~~ 272 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSP--DGRRLALTLSRDGNP 272 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECC--CCCEEEEEEeCCCCc
Confidence 345567788999999999999998764 3469999998877532 2 23444556789999 998775 445555
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCc--EEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
.|++|++.++.... +..+.......+|+|++..++++...+|. |+++++.+++.... .. .....
T Consensus 273 ~Iy~~d~~~g~~~~---lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~----------~g~~~ 338 (433)
T PRK04922 273 EIYVMDLGSRQLTR---LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TF----------QGNYN 338 (433)
T ss_pred eEEEEECCCCCeEE---CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ec----------CCCCc
Confidence 59999987765432 44555556778999999644444445555 66677766653322 11 11123
Q ss_pred EEEEEcCCCCceEEEecCC-C--eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--
Q 011160 207 NAIAIDPRNANLFAVAGSD-E--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-- 281 (492)
...+|+|+ ++.|+..+.+ + .|.+||+.+++... +.. ........|+|+|++|+..++
T Consensus 339 ~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~~---------------Lt~--~~~~~~p~~spdG~~i~~~s~~~ 400 (433)
T PRK04922 339 ARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVRT---------------LTP--GSLDESPSFAPNGSMVLYATREG 400 (433)
T ss_pred cCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeEE---------------CCC--CCCCCCceECCCCCEEEEEEecC
Confidence 46899998 5666654433 2 68999987764221 111 112345689999998776653
Q ss_pred C--cEEEEecCC
Q 011160 282 E--FIYLFTQDM 291 (492)
Q Consensus 282 ~--~i~~~d~~~ 291 (492)
+ .|++++...
T Consensus 401 g~~~L~~~~~~g 412 (433)
T PRK04922 401 GRGVLAAVSTDG 412 (433)
T ss_pred CceEEEEEECCC
Confidence 2 477777754
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=4.1e-12 Score=114.80 Aligned_cols=298 Identities=14% Similarity=0.150 Sum_probs=178.6
Q ss_pred ceEEEEee--ccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC----CCeEEEEECCCC
Q 011160 20 ALVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----DRRVILWDWKTE 93 (492)
Q Consensus 20 g~v~~w~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~ 93 (492)
+.|.+|++ ++|++. ...... -......++++|++++|.+... .+.|..|.+...
T Consensus 13 ~gI~~~~~d~~~g~l~-------------------~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~ 72 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLT-------------------LVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD 72 (345)
T ss_dssp TEEEEEEEETTTTEEE-------------------EEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT
T ss_pred CcEEEEEEcCCCCCce-------------------Eeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC
Confidence 78999988 444433 222221 2334567889999999988866 578999988764
Q ss_pred --ce--eeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEEEecccCCeeeeE-Eee-----------cCCCceEEE
Q 011160 94 --RV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETK-LLG-----------KHQGRAHKL 156 (492)
Q Consensus 94 --~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~-~~~-----------~~~~~v~~i 156 (492)
.. +.+. .........++++| ++++|+++. .+|.|.++++.....+... ... .......++
T Consensus 73 ~g~L~~~~~~-~~~g~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 73 TGTLTLLNSV-PSGGSSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp TTEEEEEEEE-EESSSCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred cceeEEeeee-ccCCCCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 32 2222 11334567899999 999998886 4899999999875433221 111 123456899
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCC--ccc--eeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATE--LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
.++|++..++++.-....|.+|++.... ... .+... .......++|+|++...+++.-.++.|.+|+
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~---------~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP---------PGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS---------TTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc---------cCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 9999996555555455689999998765 222 11111 2335688999998555556666788999999
Q ss_pred cc--cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 233 IR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 233 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
+. .+.+...... ...............++++|+|++|.++. .+.|.+|+++....
T Consensus 221 ~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-------------- 279 (345)
T PF10282_consen 221 YDPSDGSLTEIQTI-------STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-------------- 279 (345)
T ss_dssp EETTTTEEEEEEEE-------ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT--------------
T ss_pred ecccCCceeEEEEe-------eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC--------------
Confidence 88 3321110000 00000011123678899999999988877 45799999853100
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee-ccCeEEEEec--CCCeeeEEEe-cC
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGGELIRVIE-AD 384 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~-~dg~i~iwd~--~~~~~~~~~~-~h 384 (492)
....+..+..... .-+.+.+ +|+|++|+++. .++.|.+|++ .+|.+...-. ..
T Consensus 280 --------------------~l~~~~~~~~~G~--~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~ 336 (345)
T PF10282_consen 280 --------------------TLTLVQTVPTGGK--FPRHFAF-SPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP 336 (345)
T ss_dssp --------------------TEEEEEEEEESSS--SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE
T ss_pred --------------------ceEEEEEEeCCCC--CccEEEE-eCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc
Confidence 0112222222111 1578888 99999999876 5578999876 5776554332 12
Q ss_pred CceeEEEee
Q 011160 385 RHVVNCIEP 393 (492)
Q Consensus 385 ~~~v~~~~~ 393 (492)
-....|+.|
T Consensus 337 ~~~p~ci~f 345 (345)
T PF10282_consen 337 IPSPVCIVF 345 (345)
T ss_dssp SSSEEEEEE
T ss_pred CCCCEEEeC
Confidence 234566665
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.6e-13 Score=128.44 Aligned_cols=202 Identities=13% Similarity=0.153 Sum_probs=132.6
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecC---CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCc-
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQ- 129 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~- 129 (492)
+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+ ..+.+.+...+|+| +|+.|+ +.+.++.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SP--DG~~la~~~~~~g~~ 270 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSP--DGRKVVMSLSQGGNT 270 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECC--CCCEEEEEEecCCCc
Confidence 456678889999999999999887753 468999999888753 33 35566778899999 998775 5555555
Q ss_pred -EEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 130 -VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 130 -v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
|.+||+.++.... +..+........|+|+|..++++...+| .|+++|+.++....... ....+
T Consensus 271 ~Iy~~d~~~~~~~~---Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-----------~~~~~ 336 (435)
T PRK05137 271 DIYTMDLRSGTTTR---LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF-----------GGGRY 336 (435)
T ss_pred eEEEEECCCCceEE---ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec-----------CCCcc
Confidence 6677876654322 5556666778999999964444443444 58888887665433221 12235
Q ss_pred EEEEEcCCCCceEEEecC-C--CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--
Q 011160 207 NAIAIDPRNANLFAVAGS-D--EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-- 281 (492)
....|+|+ ++.|+..+. . ..|.+||+..+... .+.. ...+....|+|+|+.|+..+.
T Consensus 337 ~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~~---------------~lt~--~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 337 STPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGER---------------ILTS--GFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred cCeEECCC-CCEEEEEEcCCCceEEEEEECCCCceE---------------eccC--CCCCCCCeECCCCCEEEEEEccC
Confidence 56789998 566655443 2 35778887543211 0111 123567899999998876542
Q ss_pred -----CcEEEEecCCC
Q 011160 282 -----EFIYLFTQDMG 292 (492)
Q Consensus 282 -----~~i~~~d~~~~ 292 (492)
..++++++..+
T Consensus 399 ~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 399 GSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCCcceEEEEECCCC
Confidence 24777777553
No 236
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.62 E-value=1.3e-12 Score=114.14 Aligned_cols=314 Identities=13% Similarity=0.148 Sum_probs=204.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.++++|.|++|+.....| |.+|....+..+ .++. ...|..+.|+|.+++|.|=+..
T Consensus 37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l---------------------~~~~--~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 37 YVSESPLGTYLFSEHAAG-VECWGGPSKAKL---------------------VRFR--HPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred heeecCcchheehhhccc-eEEccccchhhe---------------------eeee--cCCceecccCcccceeeeeccC
Confidence 578999999999988664 999988765533 2232 3568899999999999986543
Q ss_pred ---------------CeEEEEECCCCceeeeeccCcCcc--eE-EEEecCCCCCceEEeecCCCcEEEEecccCCeeeeE
Q 011160 83 ---------------RRVILWDWKTERVKLSFHSGHNDN--VF-QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (492)
Q Consensus 83 ---------------~~i~iwd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 144 (492)
+.+.+||+.+|..+..+ .+...+ .+ -+.|+- +..++|-. ....++|+++ +......
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~--~D~y~ARv-v~~sl~i~e~-t~n~~~~- 166 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSI--DDKYVARV-VGSSLYIHEI-TDNIEEH- 166 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeee--cchhhhhh-ccCeEEEEec-CCccccC-
Confidence 35999999999998888 444443 44 677887 77776644 2346899997 3332211
Q ss_pred Eeec-CCCceEEEEEcCCCCc-EEEE-----EcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 145 LLGK-HQGRAHKLAIEPGSPH-VFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 145 ~~~~-~~~~v~~i~~~~~~~~-~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
.+.. ....|...+|+|.+.+ .|+. .+..+.+++|.+..+..+...... ...-..+.|++. +.
T Consensus 167 p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf----------k~~~~qLkW~~~-g~ 235 (561)
T COG5354 167 PFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF----------KVSGVQLKWQVL-GK 235 (561)
T ss_pred chhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE----------eecccEEEEecC-Cc
Confidence 1111 1356788889997432 2332 356788999998866655443321 122346778887 44
Q ss_pred eEEEec-----------CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec---CCc
Q 011160 218 LFAVAG-----------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEF 283 (492)
Q Consensus 218 ~l~~~~-----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~~~ 283 (492)
++++-- ...++++++++.... +. .....++|...+|.|.++.+++.+ .-.
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i--------------~V--~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI--------------PV--EKDLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccccc--------------ce--eccccccceeeeecccCCceeEEecccccc
Confidence 443211 224577787764321 11 113367899999999987766554 336
Q ss_pred EEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec
Q 011160 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (492)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~ 363 (492)
+.+++++... . +...... -+.+.| +|.+++++.++-
T Consensus 300 ~s~~~lr~Nl----------------------------------------~-~~~Pe~~--rNT~~f-sp~~r~il~agF 335 (561)
T COG5354 300 VSVFDLRGNL----------------------------------------R-FYFPEQK--RNTIFF-SPHERYILFAGF 335 (561)
T ss_pred eeecccccce----------------------------------------E-EecCCcc--cccccc-cCcccEEEEecC
Confidence 8899987631 1 1111111 234455 999999998776
Q ss_pred c---CeEEEEecCCCeeeE-EEecCCceeEEEeecCCCCeEEEeeC------CCCEEEeccCCCCC
Q 011160 364 C---GRIFIWKKKGGELIR-VIEADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAADR 419 (492)
Q Consensus 364 d---g~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~~ 419 (492)
+ |.|-+|+......+. .+.+.. ..-+.|+||++++.+... |..|+||++...+.
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 5 789999987655443 666543 456789999998776532 78899999987543
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.5e-13 Score=127.97 Aligned_cols=202 Identities=16% Similarity=0.186 Sum_probs=127.9
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQV 130 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v 130 (492)
+.+..+...+.+.+|+|||+.|+..+.. ..|.+||+.+++... + ....+.+...+|+| +++.|+ +.+.+|..
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SP--DG~~la~~~~~~g~~ 264 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSP--DGRTLAVALSRDGNS 264 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECC--CCCEEEEEEccCCCc
Confidence 3455677889999999999999877643 469999999887533 2 23344567899999 998876 56778877
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeC--CCCCccceeecCCCCCCCcceeecceEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL--RTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
.||.+....... ..+..+........|+|+|..+++++..+|...+|.+ .++... .+.. .......
T Consensus 265 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~----------~g~~~~~ 332 (427)
T PRK02889 265 QIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF----------TGSYNTS 332 (427)
T ss_pred eEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec----------CCCCcCc
Confidence 777664322111 2244455556778999999655445444566666654 444322 2211 1112335
Q ss_pred EEEcCCCCceEEEecCCC---eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-C--
Q 011160 209 IAIDPRNANLFAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E-- 282 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~-- 282 (492)
.+|+|+ +++|+..+.++ .|.+||+.+++... +.. ........|+|+|+.|+..++ +
T Consensus 333 ~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~~---------------lt~--~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 333 PRISPD-GKLLAYISRVGGAFKLYVQDLATGQVTA---------------LTD--TTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred eEECCC-CCEEEEEEccCCcEEEEEEECCCCCeEE---------------ccC--CCCccCceECCCCCEEEEEEecCCC
Confidence 789998 56776655443 69999998764211 111 112356799999998887763 2
Q ss_pred -cEEEEecC
Q 011160 283 -FIYLFTQD 290 (492)
Q Consensus 283 -~i~~~d~~ 290 (492)
.+++.++.
T Consensus 395 ~~l~~~~~~ 403 (427)
T PRK02889 395 SVLAAVSSD 403 (427)
T ss_pred EEEEEEECC
Confidence 25555553
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.8e-13 Score=120.92 Aligned_cols=282 Identities=13% Similarity=0.118 Sum_probs=190.6
Q ss_pred CCCCCCCce-EeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCc--cceEEEEEEcCCCCEEEEec
Q 011160 4 ASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH--RGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 4 ~~~~~~~~~-l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~ 80 (492)
+.-+|||++ +|||--.-.|++||+..-.+ .+.-| ...|.-.-++.|-..++.-.
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------KFERhlDae~V~feiLsDD~SK~v~L~ 113 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------KFERHLDAEVVDFEILSDDYSKSVFLQ 113 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEccccee-----------------------eeeecccccceeEEEeccchhhheEee
Confidence 445799999 77788888999999983222 23334 23455555566655666666
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.|.+|.+..- .|.- ..+ .-...-..|+++. -..-|+.++....|+-+++..+..... +......++++..++
T Consensus 114 ~DR~IefHak-~G~h-y~~--RIP~~GRDm~y~~--~scDly~~gsg~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 114 NDRTIEFHAK-YGRH-YRT--RIPKFGRDMKYHK--PSCDLYLVGSGSEVYRLNLEQGRFLNP--FETDSGELNVVSINE 185 (703)
T ss_pred cCceeeehhh-cCee-eee--ecCcCCccccccC--CCccEEEeecCcceEEEEccccccccc--cccccccceeeeecC
Confidence 7777776542 2221 111 1112335566665 233344445556788888888776654 666668999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCC-CCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
-. .+|++|+.+|.|..||.++......+..... ..+.+-.....|+++.|+.+ |-.+++|+..|.+.|||++..+..
T Consensus 186 ~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 186 EH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred cc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCce
Confidence 87 5889999999999999999888777665433 11222223446999999987 889999999999999999987632
Q ss_pred CCCCCCCCccccCCCCcCCCcccceEEEEEcCC--CCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCC
Q 011160 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
. ..-.....+|..+.|.+. ...+++.....++|||-.+++..
T Consensus 264 ~--------------~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~---------------------- 307 (703)
T KOG2321|consen 264 L--------------VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM---------------------- 307 (703)
T ss_pred e--------------ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce----------------------
Confidence 1 111223567889999886 45677766678999999886432
Q ss_pred CCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
..+.... .++.+|+ -|++-+++++.+++.+..|=+..
T Consensus 308 ----------------asiEpt~---~lND~C~-~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 308 ----------------ASIEPTS---DLNDFCF-VPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ----------------eeccccC---CcCceee-ecCCceEEEecCCCcceeEEccc
Confidence 2222222 2778888 68888999999888887776543
No 239
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.5e-13 Score=118.72 Aligned_cols=319 Identities=13% Similarity=0.154 Sum_probs=197.7
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC--
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-- 81 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 81 (492)
+-+||.|++|+|--..| |.+|--++-..+ +++. |. .|.-+.|||..+||+|-+.
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~---------------------~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p 271 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRI---------------------QRFY-HP-GVQFIDFSPNEKYLVTYSPEP 271 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHH---------------------Hhcc-CC-CceeeecCCccceEEEecCCc
Confidence 55899999999998776 889976644433 2332 43 4788999999999998653
Q ss_pred ---------CCeEEEEECCCCceeeeeccC-cCcce-EEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC
Q 011160 82 ---------DRRVILWDWKTERVKLSFHSG-HNDNV-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 82 ---------d~~i~iwd~~~~~~~~~~~~~-~~~~v-~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
...++|||+.+|.....|... ....+ .-..||. |++++|--.. ..|.|++...-.....+.+ .-
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki 346 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTG-NSISIYETPSFMLLDKKSL--KI 346 (698)
T ss_pred cccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEecc-ceEEEEecCceeeeccccc--CC
Confidence 257999999999998887431 11122 2457888 9999987666 4688998765333322212 23
Q ss_pred CceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe---
Q 011160 151 GRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA--- 222 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--- 222 (492)
..|....|+|.+ ++|+-=... ..+.+..+.++..+..... +...=..+-|-.. |.+|+.-
T Consensus 347 ~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nl----------fnVsDckLhWQk~-gdyLcvkvdR 414 (698)
T KOG2314|consen 347 SGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNL----------FNVSDCKLHWQKS-GDYLCVKVDR 414 (698)
T ss_pred ccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccc----------eeeeccEEEeccC-CcEEEEEEEe
Confidence 567888999987 455532211 2345555555444433222 1111123344443 4455431
Q ss_pred -------cCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC----CcEEEEecCC
Q 011160 223 -------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDM 291 (492)
Q Consensus 223 -------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----~~i~~~d~~~ 291 (492)
+.-..+.|+.++.... +.. .-.-...|...+|-|.|..+++-+. .++.+|-+.+
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdI--------------pve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDI--------------PVE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred eccccccceEeeEEEEEeeccCC--------------Cce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 1222355666665432 111 1112457889999999987665442 2588998875
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe---eccCeEE
Q 011160 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG---SDCGRIF 368 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg---~~dg~i~ 368 (492)
.... ...+..+... ..+.+.| +|.|++++.+ |..|.+.
T Consensus 480 ~~~~----------------------------------~~lVk~~dk~----~~N~vfw-sPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 480 NIKK----------------------------------PSLVKELDKK----FANTVFW-SPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred CCCc----------------------------------hhhhhhhccc----ccceEEE-cCCCcEEEEEEecccccceE
Confidence 2111 2233344331 2567777 9999999875 4578999
Q ss_pred EEecCCCeeeEEE-ecCCceeEEEeecCCCCeEEEeeC------CCCEEEeccCCCC
Q 011160 369 IWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAAD 418 (492)
Q Consensus 369 iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~ 418 (492)
++|+....+...- ..|. .-+.+.|.|.|+|+++++. |..-++|++.+..
T Consensus 521 F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 521 FYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred EEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 9998643332221 2243 4688999999999999876 4567888887653
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=2.1e-12 Score=116.74 Aligned_cols=299 Identities=13% Similarity=0.164 Sum_probs=175.2
Q ss_pred EEEecCC----CeEEEEEC--CCCceeeeeccCcCcceEEEEecCCCCCceEEeecC----CCcEEEEecccC--Ceeee
Q 011160 76 LISGSDD----RRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILER--GGVET 143 (492)
Q Consensus 76 l~s~~~d----~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~v~iw~~~~~--~~~~~ 143 (492)
++.|+.. +.|.+|++ .+++....-..........++++| ++++|++... .|.|..|.+... .....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 3445544 68888887 444432211112334567789999 9999988765 578999998875 22222
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-CccceeecC---CCCCCCcceeecceEEEEEcCCCCceE
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCR---PIDDRRNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (492)
............++++|++..++++...+|.|.++++... ......... ...............++.|+|++..++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 2233244566789999999655555567999999999874 332221110 000000000223467899999854444
Q ss_pred EEecCCCeEEEEeccccc--ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGP 295 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~ 295 (492)
++.-....|.+|++.... +... ..+........+.++|+|+++++.+.. ++.|.+|++......
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~------------~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPV------------DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEE------------EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEecCCCEEEEEEEeCCCceEEEe------------eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 445556689999997654 1110 001112345678999999999887766 557999988731100
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee-ccccceeeeeEEeecCCCcEEEEee-ccCeEEEEecC
Q 011160 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK 373 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~g~~l~sg~-~dg~i~iwd~~ 373 (492)
.. ....+..+. +.........+.+ +|||++|+++. ..+.|.+|++.
T Consensus 228 ~~-------------------------------~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 228 LT-------------------------------EIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EE-------------------------------EEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEEC
T ss_pred ee-------------------------------EEEEeeeccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEe
Confidence 00 000011110 0000012567787 99999987754 56789999993
Q ss_pred --CCe--eeEEEecCCceeEEEeecCCCCeEEEee-CCCCEEEeccC--CCCCC
Q 011160 374 --GGE--LIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN--AADRA 420 (492)
Q Consensus 374 --~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~--~~~~~ 420 (492)
+++ .+..+.........++++|+|++|+++. .++.|.+|+++ ++.+.
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 343 3444544445589999999999988876 46789999774 55444
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=9.9e-14 Score=113.17 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=86.9
Q ss_pred ccceEEEEEcCCCCeeEeec---CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee
Q 011160 261 QVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (492)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (492)
.++|..++|+|+|+.+++.. ...|.+||++. ..+..+.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------------------------------------~~i~~~~ 99 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------------------------------------KKIFSFG 99 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------------------------------------cEeEeec
Confidence 45699999999998776543 34799999863 2233333
Q ss_pred ccccceeeeeEEeecCCCcEEEEeec---cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeC------CCC
Q 011160 338 GHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESD 408 (492)
Q Consensus 338 ~~~~~~~v~~~~~~s~~g~~l~sg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~ 408 (492)
. .. ++.+.| +|+|++|++|+. .|.|.+||+.+.+.+.... |. .++.++|+|+|++|+++.. |..
T Consensus 100 ~--~~--~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng 172 (194)
T PF08662_consen 100 T--QP--RNTISW-SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNG 172 (194)
T ss_pred C--CC--ceEEEE-CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence 2 22 567888 999999999864 4779999999998887775 33 3789999999999998864 789
Q ss_pred EEEeccCCCCC
Q 011160 409 IKILTPNAADR 419 (492)
Q Consensus 409 i~iw~~~~~~~ 419 (492)
++||+.....+
T Consensus 173 ~~Iw~~~G~~l 183 (194)
T PF08662_consen 173 FKIWSFQGRLL 183 (194)
T ss_pred EEEEEecCeEe
Confidence 99999976543
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.1e-12 Score=106.48 Aligned_cols=206 Identities=16% Similarity=0.221 Sum_probs=148.1
Q ss_pred cceEEEEEEcC---CCC-EEEEecCCCeEEEEECCCCceeeeeccCcCc------ceEEEEecCCCCCceEEeecCCCcE
Q 011160 61 RGCVNTVSFNT---DGD-ILISGSDDRRVILWDWKTERVKLSFHSGHND------NVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 61 ~~~v~~~~~s~---~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
+..+..+.|.. +|. .|+-+...|.|.++..........+ .+-.. ...++.|++ .+..++++..+|.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSI 145 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeec--cCceEEEEcCCCcE
Confidence 45567777753 454 5667778899999987654443333 22211 245678888 88889999999999
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
.+-+.........+.++.|..++....|+...++++++|+.|+.+..||++-.+ ...+... ..|...|.+|.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~-------kvH~~GV~SI~ 217 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNS-------KVHTSGVVSIY 217 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecc-------eeeecceEEEe
Confidence 866655554444446889999999999999988999999999999999999433 1222111 11677899999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC--CCeeEeecCCcEEEEe
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFT 288 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~i~~~d 288 (492)
-+|..+.++++|+.|-.|++||.|+... |. ....-.+.|..+.++|. +++|+++.-+..++-+
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl-------~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGK--------PL-------FKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccC--------cc-------ccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 9987788999999999999999996431 11 11122478999999995 4567777777777777
Q ss_pred cCCC
Q 011160 289 QDMG 292 (492)
Q Consensus 289 ~~~~ 292 (492)
...+
T Consensus 283 ~~~~ 286 (339)
T KOG0280|consen 283 SSDK 286 (339)
T ss_pred eccc
Confidence 7654
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=1.2e-13 Score=114.39 Aligned_cols=261 Identities=12% Similarity=0.194 Sum_probs=167.7
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCc------------cceEEEEEEcC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH------------RGCVNTVSFNT 71 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~s~ 71 (492)
|-|..+|.+||||..+|.|-++..+...-. .+..+..++.| ...|..+.|.+
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~----------------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKG----------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred EEeecccceEeecCCCCeEEEeeccccccc----------------ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 457889999999999999999976522110 11122333333 35788999988
Q ss_pred CC--CEEEEecCCCeEEEEECCCCce-----------------------------------eeeeccCcCcceEEEEecC
Q 011160 72 DG--DILISGSDDRRVILWDWKTERV-----------------------------------KLSFHSGHNDNVFQAKIMP 114 (492)
Q Consensus 72 ~~--~~l~s~~~d~~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~~ 114 (492)
++ ..++..+.|.+|++|.+..... .+.+..+|+.-|+++.++.
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 65 4566677899999998753211 1222356888899999998
Q ss_pred CCCCceEEeecCCCcEEEEecccCCeee-eEEeec-----CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc--
Q 011160 115 FTDDRSIVTCAADGQVRHAQILERGGVE-TKLLGK-----HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-- 186 (492)
Q Consensus 115 ~~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-- 186 (492)
|+..++++. |=.|.+|++.-..... ..-+.. -+..|++..|+|...++|+..+..|+|++-|++....-
T Consensus 175 --D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 175 --DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred --ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 888888765 6689999986543211 111222 23568999999988889999999999999999954432
Q ss_pred --ceeecCCCCCCCcc--eeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCC----
Q 011160 187 --ELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG---- 258 (492)
Q Consensus 187 --~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---- 258 (492)
..+..+.......+ .--..|..+.|++. |+++++-.. -+|++||+..... |...+.......
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~--------pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAK--------PVETYPVHEYLRSKLC 321 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCC--------cceEEeehHhHHHHHH
Confidence 12211111111110 02246889999997 778876432 6899999954321 111111111000
Q ss_pred -----CcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 259 -----DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 259 -----~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
..-..-..++|+.++.++++|+ .+-+++|+...+.
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 0011224578999999999999 6679999966543
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.5e-13 Score=113.66 Aligned_cols=199 Identities=18% Similarity=0.220 Sum_probs=147.9
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCC-CEEEEecCC--CeEEE
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDD--RRVIL 87 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d--~~i~i 87 (492)
..|++|-.+|.+.+|..+.+-.... ....+..+ ..+..+.-++.. .++|+||.. ..++|
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss-----------------~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSS-----------------KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccc-----------------cceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 4577888899999999986554321 11222222 445566666644 456679988 78999
Q ss_pred EECCCCceeeeeccCc--------CcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 88 WDWKTERVKLSFHSGH--------NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
||++..+.+.+-.... .-.++++.|.+......|++++.-+.|++||.+.++... ..+..-..+++++...
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV-~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV-AQFDFLENPISSTGLT 256 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce-eEeccccCcceeeeec
Confidence 9999875544431111 124668899983237899999999999999998765432 2355567899999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccce-eecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
|++ +++++|...|.+..||+++++.... +.. ..+.+.++..+|. ..++++++-|++|||+|+.+.++
T Consensus 257 p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg----------~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 257 PSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKG----------ITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CCC-cEEEEecccchhheecccCceeeccccCC----------ccCCcceEEEcCC-CceEEeeccceeEEEeecccchh
Confidence 999 6899999999999999999987765 322 4557999999997 68999999999999999999765
Q ss_pred cC
Q 011160 239 DG 240 (492)
Q Consensus 239 ~~ 240 (492)
+.
T Consensus 325 l~ 326 (412)
T KOG3881|consen 325 LH 326 (412)
T ss_pred hh
Confidence 43
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=1.1e-12 Score=124.12 Aligned_cols=150 Identities=22% Similarity=0.324 Sum_probs=124.1
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeE
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (492)
++++.-++++|+.-+.|.+|+...-... ..+.||.+.|..+.|+.||+++++.|.|.++
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsi 199 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKP---------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSI 199 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCc---------------------ceecccCCceEEEEEccCCcEEEEEecCcce
Confidence 4566677999999999999998832222 3688999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC-CceEEEEEcCCCCc
Q 011160 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPH 164 (492)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~ 164 (492)
|+|++++.+......-+|+..|+.++|.| + .+++++.|.+.++|+..... .. .+..|. ..|..++..++. .
T Consensus 200 RlW~i~s~~~~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctcrvW~~~~~~-l~--~y~~h~g~~iw~~~~~~~~-~ 271 (967)
T KOG0974|consen 200 RLWPIDSREVLGCTGFGHSARVWACCFLP--N--RIITVGEDCTCRVWGVNGTQ-LE--VYDEHSGKGIWKIAVPIGV-I 271 (967)
T ss_pred eeeecccccccCcccccccceeEEEEecc--c--eeEEeccceEEEEEecccce-eh--hhhhhhhcceeEEEEcCCc-e
Confidence 99999998877644458999999999998 5 99999999999999764322 22 355564 578999999888 5
Q ss_pred EEEEEcCCCcEEEEeCCCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~ 184 (492)
.+++++.|+.+++|++....
T Consensus 272 ~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEeeccCcchhhhhhhccc
Confidence 88999999999999986543
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=2.2e-12 Score=121.13 Aligned_cols=234 Identities=11% Similarity=0.086 Sum_probs=144.6
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC---CcEEEEecccCCeeeeEEeecCCCceEEEEE
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 158 (492)
...|.++|...... ..+ ..+...+...+|+| ++++|+.+... ..|++|++.++.... +..+...+.+++|
T Consensus 169 ~~~l~~~d~~g~~~-~~l-~~~~~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~ 241 (417)
T TIGR02800 169 RYELQVADYDGANP-QTI-TRSREPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAF 241 (417)
T ss_pred cceEEEEcCCCCCC-EEe-ecCCCceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEE
Confidence 34688888764443 444 35666789999999 99999876643 479999998765433 3334556677899
Q ss_pred cCCCCcEEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe-cCCC--eEEEEec
Q 011160 159 EPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDE--YTRLYDI 233 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg--~v~i~d~ 233 (492)
+|++..++++.+.++ .|++|++.++....... +........|+|+ +..|+.. ...+ .|+++++
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-----------GPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEECCC-----------CCCCCCCEEECCC-CCEEEEEECCCCCceEEEEEC
Confidence 999965555665554 58889988775433221 1112345689998 5555544 3343 5777777
Q ss_pred ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-C---cEEEEecCCCCCCCCCCCCCCCccccc
Q 011160 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E---FIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (492)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~---~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (492)
.+++... ...+........|+|+|++|+.++. + .|.+|++.++..
T Consensus 310 ~~~~~~~----------------l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--------------- 358 (417)
T TIGR02800 310 DGGEVRR----------------LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--------------- 358 (417)
T ss_pred CCCCEEE----------------eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---------------
Confidence 6543210 1112334567899999998887763 3 588888765311
Q ss_pred cccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC---eEEEEecCCCeeeEEEecCCc
Q 011160 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRH 386 (492)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~h~~ 386 (492)
..+..... .....| +|+|++|+..+.++ .+++.+. +++....+..+.+
T Consensus 359 ------------------------~~l~~~~~---~~~p~~-spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g 409 (417)
T TIGR02800 359 ------------------------RVLTDTGL---DESPSF-APNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNG 409 (417)
T ss_pred ------------------------EEccCCCC---CCCceE-CCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCC
Confidence 11111111 234456 99999988877654 4556554 4555555655555
Q ss_pred eeEEEeec
Q 011160 387 VVNCIEPH 394 (492)
Q Consensus 387 ~v~~~~~s 394 (492)
.+..++|+
T Consensus 410 ~~~~~~ws 417 (417)
T TIGR02800 410 DVREPAWS 417 (417)
T ss_pred CcCCCCCC
Confidence 56665553
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.3e-10 Score=97.87 Aligned_cols=301 Identities=14% Similarity=0.145 Sum_probs=184.8
Q ss_pred cceEEEEeecc--CcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC---CCeEEEEECCC-
Q 011160 19 KALVDVWLREL--GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKT- 92 (492)
Q Consensus 19 dg~v~~w~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~- 92 (492)
+.-|++|++.+ |++-. ..+-.+.+..+-|+|+|++++|.++-. .|.|..|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~--------------------~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~ 74 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL--------------------LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD 74 (346)
T ss_pred CCceEEEEEeCcccccch--------------------hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC
Confidence 56799999873 33221 123346778899999999999988855 47788887764
Q ss_pred -Cceeeeec-cCcCcceEEEEecCCCCCceEEeecC-CCcEEEEecccCCe-eeeEEeecCCCc----------eEEEEE
Q 011160 93 -ERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGG-VETKLLGKHQGR----------AHKLAI 158 (492)
Q Consensus 93 -~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~-~~~~~~~~~~~~----------v~~i~~ 158 (492)
|+....-. .....+-+.+++++ ++++|+++.. .|.|.++.++.... ........|... +....+
T Consensus 75 ~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~ 152 (346)
T COG2706 75 DGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF 152 (346)
T ss_pred CCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence 44321110 11223448899999 9999998875 58999999976432 222223345544 788999
Q ss_pred cCCCCcEEEEEc-CCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe-cCCCeEEEEecccc
Q 011160 159 EPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDEYTRLYDIRKY 236 (492)
Q Consensus 159 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~i~d~~~~ 236 (492)
.|++. ++++.. .--.|.+|++..++....-...-. .......|.|+|+ +++.++. --+++|.+|.....
T Consensus 153 tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-------~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 153 TPDGR-YLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-------PGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCCCC-EEEEeecCCceEEEEEcccCccccccccccC-------CCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCC
Confidence 99995 555543 334699999997765433222111 3345688999998 5665544 46899999998773
Q ss_pred --cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC--cEEEEecCCCCCCCCCCCCCCCcccccccc
Q 011160 237 --KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (492)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (492)
++..... ..+...-. ........+..+|+|++|.++..+ .|.+|.+......
T Consensus 224 ~g~~~~lQ~------i~tlP~dF-~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~----------------- 279 (346)
T COG2706 224 VGKFEELQT------IDTLPEDF-TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK----------------- 279 (346)
T ss_pred CceEEEeee------eccCcccc-CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------------
Confidence 2111000 00011111 124567889999999999999854 6888887642100
Q ss_pred CCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc-CeEEEEec--CCCeeeEEEe-cCCcee
Q 011160 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKK--KGGELIRVIE-ADRHVV 388 (492)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d-g~i~iwd~--~~~~~~~~~~-~h~~~v 388 (492)
.........+.. .-+...+ +|.|++|+++..+ ..|.+|.+ .+|++-.... ......
T Consensus 280 -----------------L~~~~~~~teg~--~PR~F~i-~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~P 339 (346)
T COG2706 280 -----------------LELVGITPTEGQ--FPRDFNI-NPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEP 339 (346)
T ss_pred -----------------EEEEEEeccCCc--CCcccee-CCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCc
Confidence 011111111111 1356776 9999999988766 46888765 4565543332 233345
Q ss_pred EEEeec
Q 011160 389 NCIEPH 394 (492)
Q Consensus 389 ~~~~~s 394 (492)
.||.|.
T Consensus 340 vcv~f~ 345 (346)
T COG2706 340 VCVKFL 345 (346)
T ss_pred EEEEEc
Confidence 666653
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.54 E-value=1.2e-10 Score=102.24 Aligned_cols=275 Identities=12% Similarity=0.074 Sum_probs=167.6
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC----------CCcEEEEecccCCeeeeEEeecC---
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGKH--- 149 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~~~--- 149 (492)
++|.+.|..+++.+..+..+.... .+ ++| +++.|+++.. +..|.+||..+.+.+....+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 789999999999888885454333 24 999 9988887665 78999999999888766444221
Q ss_pred --CCceEEEEEcCCCCcEEEEEc-C-CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC
Q 011160 150 --QGRAHKLAIEPGSPHVFYTCG-E-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 150 --~~~v~~i~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
......++++|+|+ +|+... . +..|.+.|+.+++.+..+..... ..-...++. ..+ +-+.|
T Consensus 102 ~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-----------~~vy~t~e~-~~~--~~~~D 166 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-----------YHIFPTAND-TFF--MHCRD 166 (352)
T ss_pred hccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-----------cEEEEecCC-ccE--EEeec
Confidence 22334789999995 555444 3 78999999999998887764221 111112221 111 22233
Q ss_pred CeEEEEecccccccCCCCCCCCccccCC-CCcCCCcccceEEEEEcC-CCCeeEeecCCcEEEEecCCCCCCCCCCCCCC
Q 011160 226 EYTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPV 303 (492)
Q Consensus 226 g~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 303 (492)
|......+........... + .+.. .... ...+ .|.+ +|+++.....++|++.|+........
T Consensus 167 g~~~~v~~d~~g~~~~~~~--~--vf~~~~~~v--~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~------ 230 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPT--E--VFHPEDEYL--INHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFL------ 230 (352)
T ss_pred CceEEEEecCCCceEEeee--e--eecCCcccc--ccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceec------
Confidence 4333332222111000000 0 0000 0000 0111 3455 88888888889999999755321110
Q ss_pred CccccccccCCCCCCCCCCCCCCCccccCCceeecc-----ccceeeeeEEeecCCCcEEEEee----------ccCeEE
Q 011160 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-----RNCVTVKGVNFFGPKCEYVVSGS----------DCGRIF 368 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~s~~g~~l~sg~----------~dg~i~ 368 (492)
.....+... -.+.....+++ +|+++.++... ..+.|.
T Consensus 231 ---------------------------~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 231 ---------------------------PAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred ---------------------------ceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCCEEE
Confidence 001111000 00111334777 99999888743 125799
Q ss_pred EEecCCCeeeEEEecCCceeEEEeecCCCC-eEEEee-CCCCEEEeccCCCCCCcc
Q 011160 369 IWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRATL 422 (492)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~ 422 (492)
++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+++....
T Consensus 283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 999999999998874 34689999999999 777665 578899999998866543
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=6.6e-13 Score=125.68 Aligned_cols=282 Identities=14% Similarity=0.096 Sum_probs=190.4
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCC----CCCceEEeecCCCcEEEEec
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF----TDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~~~~~dg~v~iw~~ 135 (492)
|-+++++.++-. .+|+.|.. -.|.+||+..+..+..+..-+-..+. .+. -.+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecch
Confidence 345556666543 56666554 56999999988765444221211111 110 02345555555444433222
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
.... .......|....+.-+. ..++.++.+..+.+||...+.....+...... .-....-+.++++
T Consensus 79 ~~~~------~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------~l~~~~~~g~s~~- 144 (967)
T KOG0974|consen 79 SNQI------IERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------TLYSSLIIGDSAE- 144 (967)
T ss_pred hhhh------hhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceE------EEEeEEEEeccCc-
Confidence 1111 11223344444455555 46788888899999999888766655432211 1111223345565
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLG 294 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~ 294 (492)
.-++++|+.-+.|.+|+....+ ......+|.+.|-++.|+.+|+++++.+++ .+++|++++.+.
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn---------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDN---------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred EEEEEeccccccEEEEeccccC---------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc
Confidence 6789999999999999987322 122467799999999999999999999976 799999998532
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
...+.-+|... +..++| .|+ .+++++.|.+.++|+. .
T Consensus 210 -------------------------------------~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~-~ 246 (967)
T KOG0974|consen 210 -------------------------------------LGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGV-N 246 (967)
T ss_pred -------------------------------------cCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEec-c
Confidence 22356678776 888998 787 9999999999999976 5
Q ss_pred CeeeEEEecCCc-eeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 375 GELIRVIEADRH-VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 375 ~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
++.+..+..|.+ .|..++..++...++|++.|+.+++|++......
T Consensus 247 ~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 247 GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 555668888875 5999999999999999999999999999775443
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.6e-12 Score=119.00 Aligned_cols=235 Identities=14% Similarity=0.112 Sum_probs=143.4
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC-C--CcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-D--GQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d--g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.|.++|...... ..+ ..+...+.+..|+| +|+.|+..+. + ..|.+||+.+++.... ..........+|+|
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~l---t~~~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREKV---TSFPGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEEe---cCCCCCcCCeeECC
Confidence 677778765443 333 35667889999999 9998887643 3 3588888877654332 22223345789999
Q ss_pred CCCcEEEEEcCCCc--EEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC--eEEEEecccc
Q 011160 161 GSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKY 236 (492)
Q Consensus 161 ~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~i~d~~~~ 236 (492)
+|..++++.+.+|. |+++|+.+++...... +.......+|+|++..++++...++ .|+++|+.++
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-----------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALTRITR-----------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-----------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99766566666775 7788888776433221 1123466789998544444444444 4666676655
Q ss_pred cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--C--cEEEEecCCCCCCCCCCCCCCCcccccccc
Q 011160 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (492)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (492)
+... +.. ........+|+|+|++|+..+. + .|.++|+.++..
T Consensus 341 ~~~~---------------Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------------------ 386 (448)
T PRK04792 341 KVSR---------------LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------------------ 386 (448)
T ss_pred CEEE---------------Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe------------------
Confidence 4211 000 1112234689999998877652 3 366677665321
Q ss_pred CCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc-C--eEEEEecCCCeeeEEEecCCceeE
Q 011160 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-G--RIFIWKKKGGELIRVIEADRHVVN 389 (492)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~ 389 (492)
..+..... .....| +|+|++|+..+.+ | .+++++. +|.....+..+.+.+.
T Consensus 387 ---------------------~~lt~~~~---d~~ps~-spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~ 440 (448)
T PRK04792 387 ---------------------QVLTSTRL---DESPSV-APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVK 440 (448)
T ss_pred ---------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 11111111 123356 9999988775543 3 4777887 6777777776667788
Q ss_pred EEeecCC
Q 011160 390 CIEPHPH 396 (492)
Q Consensus 390 ~~~~s~~ 396 (492)
..+|+|-
T Consensus 441 ~p~Wsp~ 447 (448)
T PRK04792 441 SPAWSPF 447 (448)
T ss_pred CCccCCC
Confidence 8899873
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.1e-12 Score=107.11 Aligned_cols=150 Identities=11% Similarity=0.203 Sum_probs=104.1
Q ss_pred EEEEEcCCCCEEEEecC----------CCeEEEEECCC-CceeeeeccCcCcceEEEEecCCCCCceEEee--cCCCcEE
Q 011160 65 NTVSFNTDGDILISGSD----------DRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC--AADGQVR 131 (492)
Q Consensus 65 ~~~~~s~~~~~l~s~~~----------d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~v~ 131 (492)
..+.|+|+|++|+.-.. -+...||.++. +.....+.....++|.+++|+| +++.|++. ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP--~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP--NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc--CCCEEEEEEccCCcccE
Confidence 36789999987765332 23455665532 2333333223455799999999 88887654 4567999
Q ss_pred EEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC---CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
+||++ ...+.. + +...++.|.|+|+|. +|++++. .|.|.+||.++.+.+.... + ..+..
T Consensus 87 lyd~~-~~~i~~--~--~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----------~-~~~t~ 148 (194)
T PF08662_consen 87 LYDVK-GKKIFS--F--GTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFE-----------H-SDATD 148 (194)
T ss_pred EEcCc-ccEeEe--e--cCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEEeeccc-----------c-CcEEE
Confidence 99996 333322 3 356788999999995 6676654 4679999999877766553 2 24689
Q ss_pred EEEcCCCCceEEEecC------CCeEEEEeccc
Q 011160 209 IAIDPRNANLFAVAGS------DEYTRLYDIRK 235 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~------dg~v~i~d~~~ 235 (492)
++|+|+ |++|+++.. |..++||+...
T Consensus 149 ~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 149 VEWSPD-GRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEcCC-CCEEEEEEeccceeccccEEEEEecC
Confidence 999999 678777653 78899999854
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=1.6e-10 Score=101.60 Aligned_cols=281 Identities=12% Similarity=0.123 Sum_probs=162.4
Q ss_pred ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC----------CCeEEEEE
Q 011160 20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----------DRRVILWD 89 (492)
Q Consensus 20 g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~i~iwd 89 (492)
++|.+.|..+++++ .++..-..+- .+ ++||++.|+.+.. +..|.+||
T Consensus 27 ~~v~ViD~~~~~v~---------------------g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 27 TQVYTIDGEAGRVL---------------------GMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred ceEEEEECCCCEEE---------------------EEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 89999999988776 3333222222 24 9999998877655 68899999
Q ss_pred CCCCceeeeeccCc------CcceEEEEecCCCCCceEEeec-C-CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 90 WKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCA-A-DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 90 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~-~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
..+.+.+..+..+- ......++++| +|++|++.. . +..|.+.|+.+++.+...... +...-...++.
T Consensus 84 ~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp---~~~~vy~t~e~ 158 (352)
T TIGR02658 84 PQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP---DCYHIFPTAND 158 (352)
T ss_pred CccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC---CCcEEEEecCC
Confidence 99999988874321 12334788999 999998776 3 689999999988776653332 11111222222
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
. +.+-+.||......+.+..........-...........+ .|.+.++.++..... |+|.+.|+........
T Consensus 159 ~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 159 T---FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred c---cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceec
Confidence 1 1222344444443332221111100000000000000111 345523566666555 9999999755432211
Q ss_pred CCCCCCccccCCCCc-CCCcccceEEEEEcCCCCeeEeec-----------CCcEEEEecCCCCCCCCCCCCCCCccccc
Q 011160 242 TDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (492)
..+ ........ ..-....+.-++++|+++.++... .+.|.++|..+.
T Consensus 231 ~~~----~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----------------- 289 (352)
T TIGR02658 231 PAI----EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----------------- 289 (352)
T ss_pred cee----eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-----------------
Confidence 100 00000000 011233445599999998877632 136889998774
Q ss_pred cccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEee-ccCeEEEEecCCCeeeEEEe
Q 011160 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIFIWKKKGGELIRVIE 382 (492)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~~ 382 (492)
+.+..+..-. .+..+++ +||++ +|++.+ .++.|.++|..+++.++.+.
T Consensus 290 ---------------------kvi~~i~vG~---~~~~iav-S~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 290 ---------------------KRLRKIELGH---EIDSINV-SQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred ---------------------eEEEEEeCCC---ceeeEEE-CCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 3333333222 2678998 99999 777665 57889999999999998883
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=8.3e-12 Score=117.22 Aligned_cols=235 Identities=9% Similarity=0.083 Sum_probs=145.5
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC---CcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.|.++|.+.+.. ..+ ..+...+...+|+| +|+.|+..+.+ ..|.+|++.++.... +......+...+|+|
T Consensus 180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTL-LQSREPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEE-ecCCCceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECC
Confidence 577888775543 444 35667889999999 99998776533 368899998775543 333334455789999
Q ss_pred CCCcEEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC--eEEEEecccc
Q 011160 161 GSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKY 236 (492)
Q Consensus 161 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~i~d~~~~ 236 (492)
+|..++++...+| .|++||+.+++...... .........|+|++..++++...+| .|+++++.++
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN-----------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEccc-----------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9965555666555 58888998876543221 1123456789998544444444444 5667777665
Q ss_pred cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--C--cEEEEecCCCCCCCCCCCCCCCcccccccc
Q 011160 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (492)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (492)
+.... ... ........|+|+|++|+..+. + .|.+||+.++..
T Consensus 322 ~~~~l--------------t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------------ 367 (430)
T PRK00178 322 RAERV--------------TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------------ 367 (430)
T ss_pred CEEEe--------------ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------------
Confidence 42110 000 112335689999999877652 2 488888876421
Q ss_pred CCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc---CeEEEEecCCCeeeEEEecCCceeE
Q 011160 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVN 389 (492)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~ 389 (492)
+.+..... .....| +|+|++++..+.+ ..|+++++ .+.....+..+.+.+.
T Consensus 368 ---------------------~~lt~~~~---~~~p~~-spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 368 ---------------------RILTDTSL---DESPSV-APNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQGEVR 421 (430)
T ss_pred ---------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 11111001 123456 9999999876654 35777787 4555556665666778
Q ss_pred EEeecCC
Q 011160 390 CIEPHPH 396 (492)
Q Consensus 390 ~~~~s~~ 396 (492)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 8888874
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.8e-11 Score=115.02 Aligned_cols=201 Identities=11% Similarity=0.114 Sum_probs=126.9
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCC--
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADG-- 128 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg-- 128 (492)
+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.+++... + ....+.+...+|+| +|+.|+ +...+|
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~Sp--DG~~la~~~~~~g~~ 267 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSP--DGSKLAFVLSKDGNP 267 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECC--CCCEEEEEEccCCCc
Confidence 3455567789999999999999876543 368999998887533 2 23334456789999 998887 444455
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
.|.+||+.++.... +..+........|+|++..++++...+| .|+++++.+++..... .. ....
T Consensus 268 ~Iy~~d~~~~~~~~---lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~----------~~~~ 333 (430)
T PRK00178 268 EIYVMDLASRQLSR---VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FV----------GNYN 333 (430)
T ss_pred eEEEEECCCCCeEE---cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cC----------CCCc
Confidence 57888887765432 4445555677899999965555554444 5777788777643222 11 1122
Q ss_pred EEEEEcCCCCceEEEec-CCC--eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--
Q 011160 207 NAIAIDPRNANLFAVAG-SDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~-~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-- 281 (492)
....|+|+ ++.++..+ .++ .|.+||+.+++... +... .......|+|+|+.|+..+.
T Consensus 334 ~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~~---------------lt~~--~~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 334 ARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVRI---------------LTDT--SLDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred cceEECCC-CCEEEEEEccCCceEEEEEECCCCCEEE---------------ccCC--CCCCCceECCCCCEEEEEEecC
Confidence 35689998 45665544 333 57888887764211 0000 11124589999998877652
Q ss_pred C--cEEEEecCC
Q 011160 282 E--FIYLFTQDM 291 (492)
Q Consensus 282 ~--~i~~~d~~~ 291 (492)
+ .++++++..
T Consensus 396 g~~~l~~~~~~g 407 (430)
T PRK00178 396 GRGVLMLVSING 407 (430)
T ss_pred CceEEEEEECCC
Confidence 2 366777643
No 255
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=5.2e-14 Score=130.61 Aligned_cols=201 Identities=12% Similarity=0.150 Sum_probs=139.6
Q ss_pred eeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC-
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG- 128 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg- 128 (492)
||+..+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.....+ .+|..+|+.+.-+. +|..+++.+.-.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~--dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSV--DGSTQLTSSSSSS 1166 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccC--CcceeeeeccccC
Confidence 45777888899999999999999999999999999999999999987777 89999999998887 888877655432
Q ss_pred -cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 129 -QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 129 -~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
-..+|++.+-... ...+ ..-.++.|+.... .-+.|+......+||++++.....+-..... ....-+
T Consensus 1167 PlsaLW~~~s~~~~-~Hsf----~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~------~~y~~n 1234 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGP-RHSF----DEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVT------SSYSNN 1234 (1516)
T ss_pred chHHHhccccccCc-cccc----cccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchh------hhhhcc
Confidence 4679998652221 1112 2345788887653 3355555567899999999887764322111 111237
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~ 287 (492)
+..|+|. ..+++ .|| .+||++..+.+..+. ... .-..=.|+|+|.-++..+ .||
T Consensus 1235 ~a~FsP~-D~LIl---ndG--vLWDvR~~~aIh~FD---------------~ft-~~~~G~FHP~g~eVIINS----EIw 1288 (1516)
T KOG1832|consen 1235 LAHFSPC-DTLIL---NDG--VLWDVRIPEAIHRFD---------------QFT-DYGGGGFHPSGNEVIINS----EIW 1288 (1516)
T ss_pred ccccCCC-cceEe---eCc--eeeeeccHHHHhhhh---------------hhe-ecccccccCCCceEEeec----hhh
Confidence 7899998 45555 345 689999875433211 000 112235888887666544 578
Q ss_pred ecCC
Q 011160 288 TQDM 291 (492)
Q Consensus 288 d~~~ 291 (492)
|+++
T Consensus 1289 D~RT 1292 (1516)
T KOG1832|consen 1289 DMRT 1292 (1516)
T ss_pred hhHH
Confidence 8887
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=1.3e-11 Score=116.00 Aligned_cols=200 Identities=14% Similarity=0.136 Sum_probs=128.9
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEe-ecCCC--
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADG-- 128 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg-- 128 (492)
+.+..+...+...+|+|||++|+.++.. ..|++|++.++..... ..+...+.+++|+| +++.|+. .+.++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSP--DGSKLAVSLSKDGNP 258 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3455567778999999999999887643 4799999998865332 24555677899999 9987764 44444
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
.|.+|++.++.... +..+........|+|++..++++....+ .|+++++.+++...... .....
T Consensus 259 ~i~~~d~~~~~~~~---l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-----------~~~~~ 324 (417)
T TIGR02800 259 DIYVMDLDGKQLTR---LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF-----------RGGYN 324 (417)
T ss_pred cEEEEECCCCCEEE---CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-----------CCCCc
Confidence 58888887654332 3444445567789999965444444444 57888887765432211 12245
Q ss_pred EEEEEcCCCCceEEEecCCC---eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC
Q 011160 207 NAIAIDPRNANLFAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~ 282 (492)
..+.|+|+ +.+++.++.++ .|.+||+.++.... +.. ........|+|+|++|+..+ ++
T Consensus 325 ~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~~---------------l~~--~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 325 ASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGERV---------------LTD--TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeEE---------------ccC--CCCCCCceECCCCCEEEEEEeCC
Confidence 67889998 56777666655 78888887643210 000 11223457999999887766 33
Q ss_pred ---cEEEEecC
Q 011160 283 ---FIYLFTQD 290 (492)
Q Consensus 283 ---~i~~~d~~ 290 (492)
.+++.+..
T Consensus 387 ~~~~l~~~~~~ 397 (417)
T TIGR02800 387 GRGVLGLVSTD 397 (417)
T ss_pred CcEEEEEEECC
Confidence 25565544
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.48 E-value=5.6e-11 Score=109.69 Aligned_cols=306 Identities=15% Similarity=0.106 Sum_probs=177.5
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
+.++++++.+|.|..+|..+|+++-+ ..+.+ ........ ++..++.++.++.+..+|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~-------------------~~~~~--~~~~~p~v--~~~~v~v~~~~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWR-------------------VDLDE--RLSGGVGA--DGGLVFVGTEKGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeee-------------------ecCCC--CcccceEE--cCCEEEEEcCCCEEEEEE
Confidence 55678888889999999999987622 11111 11111222 466788888899999999
Q ss_pred CCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc---eEEEEEcCCCCcEE
Q 011160 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPHVF 166 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~---v~~i~~~~~~~~~l 166 (492)
..+|+.+.+... ...+.+ +|.-.+..++.++.+|.|..||..+++.+........... ..+.... ++ .+
T Consensus 122 ~~tG~~~W~~~~--~~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v 193 (377)
T TIGR03300 122 AEDGKELWRAKL--SSEVLS---PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--GV 193 (377)
T ss_pred CCCCcEeeeecc--Cceeec---CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--EE
Confidence 999998776522 222222 1211345677778899999999988876654222211000 0111111 22 56
Q ss_pred EEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce-EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCC
Q 011160 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (492)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 245 (492)
+.+..+|.+..+|+++++.+...................+ ....+. +..+++++.+|.++.||..+++.......
T Consensus 194 ~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~- 269 (377)
T TIGR03300 194 LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDA- 269 (377)
T ss_pred EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence 7788889999999999987654332110000000000000 111121 24677788899999999988764332110
Q ss_pred CCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
....... ..+..++.++ ++.++.+|..+++......
T Consensus 270 ----------------~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~------------------------- 306 (377)
T TIGR03300 270 ----------------SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKND------------------------- 306 (377)
T ss_pred ----------------CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccc-------------------------
Confidence 0011111 1334444444 7789999998764322210
Q ss_pred CCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeE-EEeecCCCCeEEEe
Q 011160 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVLASS 403 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~ 403 (492)
.+.+.. ..+... .+..|++++.+|.|+++|..+|+.+..++.+...+. +..+. ++ .|+.+
T Consensus 307 ----------~~~~~~----~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~ 367 (377)
T TIGR03300 307 ----------ELKYRQ----LTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQ 367 (377)
T ss_pred ----------cccCCc----cccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEE
Confidence 011110 111111 356888899999999999999999998886664332 22332 33 47788
Q ss_pred eCCCCEEEe
Q 011160 404 GIESDIKIL 412 (492)
Q Consensus 404 ~~dg~i~iw 412 (492)
+.||.|+.+
T Consensus 368 ~~dG~l~~~ 376 (377)
T TIGR03300 368 TRDGDLYAF 376 (377)
T ss_pred eCCceEEEe
Confidence 889998876
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.3e-11 Score=109.29 Aligned_cols=291 Identities=11% Similarity=0.085 Sum_probs=180.7
Q ss_pred CCCCCCCceEeec-----cC-----cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecC-ccceEEEEEEcCC
Q 011160 4 ASNNNNNKRARTS-----VD-----KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTD 72 (492)
Q Consensus 4 ~~~~~~~~~l~t~-----~~-----dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~ 72 (492)
+-|+|.+.+|.|- .. .-.+++|+++++.... .++. .+.. +++.|++|
T Consensus 79 L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s---------------------~~q~k~Q~~-W~~qfs~d 136 (566)
T KOG2315|consen 79 LLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRS---------------------QIQKKMQNG-WVPQFSID 136 (566)
T ss_pred eeecccccccccccccccccCCCCCCCceeeeeeccceehh---------------------heehhhhcC-cccccccc
Confidence 4467777776651 11 2346699999855542 1221 2222 68999998
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEe-----ecCCCcEEEEecccCCe---eeeE
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-----CAADGQVRHAQILERGG---VETK 144 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~v~iw~~~~~~~---~~~~ 144 (492)
..+.|-- ..+.+.+|+......+.. .-|...|+.+.++|......+++ .+.-..|+||....... +..+
T Consensus 137 Esl~arl-v~nev~f~~~~~f~~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k 213 (566)
T KOG2315|consen 137 ESLAARL-VSNEVQFYDLGSFKTIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK 213 (566)
T ss_pred hhhhhhh-hcceEEEEecCCccceee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc
Confidence 7654432 236799999887544333 34678899999999323344443 34556899998863222 1111
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCC-----------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGED-----------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
.+. ...=-.+.|++.|..+|+.++.| .++++.+++.....-.+. ..++|.++.|+|
T Consensus 214 sFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-----------k~GPVhdv~W~~ 280 (566)
T KOG2315|consen 214 SFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-----------KEGPVHDVTWSP 280 (566)
T ss_pred ccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-----------CCCCceEEEECC
Confidence 111 12223578888886666665432 467777777433333322 456899999999
Q ss_pred CCCceE-EEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C---CcEEEEe
Q 011160 214 RNANLF-AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D---EFIYLFT 288 (492)
Q Consensus 214 ~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~---~~i~~~d 288 (492)
++..+. +.|-.-..+.|||++..-. ..-..++-+++-|+|.|++|+.++ + |.+-+||
T Consensus 281 s~~EF~VvyGfMPAkvtifnlr~~~v------------------~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 281 SGREFAVVYGFMPAKVTIFNLRGKPV------------------FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCEEEEEEecccceEEEEcCCCCEe------------------EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 843333 3355667899999976421 111346678899999999988777 3 4699999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec-----
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD----- 363 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~----- 363 (492)
+.+. +.+..+.... .+-+.| +|||++++|+..
T Consensus 343 v~n~--------------------------------------K~i~~~~a~~----tt~~eW-~PdGe~flTATTaPRlr 379 (566)
T KOG2315|consen 343 VPNR--------------------------------------KLIAKFKAAN----TTVFEW-SPDGEYFLTATTAPRLR 379 (566)
T ss_pred ccch--------------------------------------hhccccccCC----ceEEEE-cCCCcEEEEEeccccEE
Confidence 9873 3344444332 234566 999999998863
Q ss_pred -cCeEEEEecCCCeeeEEEecCCceeEEEeecC
Q 011160 364 -CGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (492)
Q Consensus 364 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (492)
|+.++||+. +|.++..-.-.. ....+.|-|
T Consensus 380 vdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 380 VDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred ecCCeEEEEe-cCceeehhhhhH-hHhheeeee
Confidence 678999998 676654332211 466667765
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=6.3e-10 Score=93.90 Aligned_cols=294 Identities=12% Similarity=0.201 Sum_probs=179.2
Q ss_pred CCeEEEEECCCC--ceeeeeccCcCcceEEEEecCCCCCceEEeecC---CCcEEEEecccC--CeeeeEEeecCCCceE
Q 011160 82 DRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILER--GGVETKLLGKHQGRAH 154 (492)
Q Consensus 82 d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~--~~~~~~~~~~~~~~v~ 154 (492)
+.-|.+|++.+. +......-.+...++-|+|+| +++.|+++.. +|.|.-|.+... .....-.......+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 456999998743 322222235677899999999 9989988765 477888887653 3222111111223448
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcce--eecceEEEEEcCCCCceEEEec-CCCeEEE
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYM--TVVNLNAIAIDPRNANLFAVAG-SDEYTRL 230 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~-~dg~v~i 230 (492)
.+++++++..++.+....|.|.++-++. |................|. ....+-...+.|+ +++|++.. .--.|.+
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEE
Confidence 8999999965555555678999999876 4332221111100000000 1122667889998 55666544 4457999
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCC-CCCCCCCCCCCccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGL-GPNPPPSSPVSTRS 307 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~-~~~~~~~~~~~~~~ 307 (492)
|++..+++.... +..+ .....-+.|.|+|++++....+ +++|.+|..+... ....+..
T Consensus 172 y~~~dg~L~~~~----------~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~------- 232 (346)
T COG2706 172 YDLDDGKLTPAD----------PAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT------- 232 (346)
T ss_pred EEcccCcccccc----------cccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee-------
Confidence 999977643321 1111 2345678899999999887766 6789999987631 1111000
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec-cCeEEEEecCC--Cee--eEEEe
Q 011160 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG--GEL--IRVIE 382 (492)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-dg~i~iwd~~~--~~~--~~~~~ 382 (492)
.......|.+... ...|.. +|||++|.++.. ...|.+|.+.. +++ +....
T Consensus 233 ---------------------i~tlP~dF~g~~~---~aaIhi-s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 233 ---------------------IDTLPEDFTGTNW---AAAIHI-SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred ---------------------eccCccccCCCCc---eeEEEE-CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec
Confidence 0112223444433 466776 999999987643 24688887643 332 22333
Q ss_pred cCCceeEEEeecCCCCeEEEeeCC-CCEEEeccC--CCCCCcc
Q 011160 383 ADRHVVNCIEPHPHSTVLASSGIE-SDIKILTPN--AADRATL 422 (492)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~--~~~~~~~ 422 (492)
.+......+.|+|.+++|+.++.+ ..|.+|..+ ++++..+
T Consensus 288 teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 288 TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 455558899999999999988875 468888764 4555443
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3e-11 Score=111.93 Aligned_cols=228 Identities=13% Similarity=0.084 Sum_probs=132.1
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCc--EEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeec
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH--VFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
.|.+.|........ +......+.+-+|+|||.. ++++...+| .|.+.++.+++....... ..
T Consensus 166 ~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-----------~g 231 (428)
T PRK01029 166 ELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-----------QG 231 (428)
T ss_pred eEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-----------CC
Confidence 56666665443322 4444556677899999965 223454444 588888888765433321 12
Q ss_pred ceEEEEEcCCCCceEEEecCCC----eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec
Q 011160 205 NLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
.....+|+||+..++++...+| .+.+|++..+... .+..+...........+|+|||+.|+..+
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s 299 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG------------KPRRLLNEAFGTQGNPSFSPDGTRLVFVS 299 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC------------cceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence 3346799999444444443333 3444666543100 01111111122345679999999887665
Q ss_pred --CCc--EEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc
Q 011160 281 --DEF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (492)
Q Consensus 281 --~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~ 356 (492)
++. |+++++... ......+..+... +....| +|||+
T Consensus 300 ~~~g~~~ly~~~~~~~-------------------------------------g~~~~~lt~~~~~--~~~p~w-SPDG~ 339 (428)
T PRK01029 300 NKDGRPRIYIMQIDPE-------------------------------------GQSPRLLTKKYRN--SSCPAW-SPDGK 339 (428)
T ss_pred CCCCCceEEEEECccc-------------------------------------ccceEEeccCCCC--ccceeE-CCCCC
Confidence 343 444444321 0111222222222 456677 99999
Q ss_pred EEEEeecc---CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeC---CCCEEEeccCCCCCCccc
Q 011160 357 YVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---ESDIKILTPNAADRATLP 423 (492)
Q Consensus 357 ~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~ 423 (492)
+|+..+.+ ..|++||+.+++... +......+....|+|||++|+.... ...|.+|++.+++...+.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 98876543 479999998887643 3333345778999999998775433 356888999887766554
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.6e-11 Score=111.89 Aligned_cols=290 Identities=11% Similarity=0.113 Sum_probs=190.6
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--------------eeeeccCcCcceEEEEecCCCCCceEEeec
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--------------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 125 (492)
......|++|+....+||.||.||.++|-.+.+... ..+.+.||...|.-+.|+. +.+.|-+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--~~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--NNQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--ccccccccC
Confidence 456788999999999999999999999998765321 1223479999999999998 888899999
Q ss_pred CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecc
Q 011160 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (492)
Q Consensus 126 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (492)
.+|.|.+|-+-.+.......-......|.+|+|+.+|. .+.....||.|.+=.++....-.. .. ....
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgK-eL----------kg~~ 158 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGK-EL----------KGQL 158 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecch-hc----------chhe
Confidence 99999999998877655433445567889999999995 678889999988776654432111 00 1123
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCc---CCCcccceEEEEEc--------CCCC
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL---IGDEQVGITGLAFS--------DQSE 274 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~s--------~~~~ 274 (492)
...+.|++| ...++.+-.+|.+.+||....- ... ....|.... .......|..+.|. |+..
T Consensus 159 l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF-~~K------l~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP 230 (1189)
T KOG2041|consen 159 LAHVLWSED-LEQALFKKANGETHLYDNQGNF-ERK------LEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP 230 (1189)
T ss_pred ccceeeccc-HHHHHhhhcCCcEEEecccccH-HHh------hhhceEEeeeeeecCCCccccceeeccCccccCCCCCC
Confidence 457889998 5677778888999999975431 111 001111000 00111123334333 3555
Q ss_pred eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC
Q 011160 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (492)
Q Consensus 275 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 353 (492)
.|+.+. +|.+.+..-.+.. ....+... ..+....| ++
T Consensus 231 ~lavcy~nGr~QiMR~eND~--------------------------------------~Pvv~dtg---m~~vgakW-nh 268 (1189)
T KOG2041|consen 231 RLAVCYANGRMQIMRSENDP--------------------------------------EPVVVDTG---MKIVGAKW-NH 268 (1189)
T ss_pred EEEEEEcCceehhhhhcCCC--------------------------------------CCeEEecc---cEeeccee-cC
Confidence 666655 4556554433211 11111111 12778888 99
Q ss_pred CCcEEEEeecc---------CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 354 KCEYVVSGSDC---------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 354 ~g~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
+|..||.++.+ +.|.+|.. -|+.+.+++.....|++++|-..|-.+|.+ .|+.|++=++.
T Consensus 269 ~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 269 NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 99999988754 25666664 678888998888889999997766555544 34555544443
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=4e-12 Score=113.29 Aligned_cols=210 Identities=16% Similarity=0.157 Sum_probs=151.5
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeee-eeeEeecCccceEEEEEE----cCCCCEEEEec
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKLDKHRGCVNTVSF----NTDGDILISGS 80 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~----s~~~~~l~s~~ 80 (492)
+||...++|....||.+|+|+..++++.. -|.+.+..+.-++..- .+.. ..-.-...++.+ +.+...|+-|.
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~-e~~p~~~~s~t~~~~~w~L~~--~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQ-EFAPIASLSGTCTYTKWGLSA--DYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeee-eeccchhccCcceeEEEEEEe--ccchHHHHhHHHHhhccCCceEEEeec
Confidence 46778899999999999999999887652 2333322222221110 0000 000001111111 12345788888
Q ss_pred CCCeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 81 DDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
..|.|.+|++..|+....+. ..|.+.|.++.++. +-..|.+++.|+.+..|+......++. +......+.+++++
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~--~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRI--WKEQKPLVSSLCIS 153 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeee--eccCCCccceEEEc
Confidence 99999999999999887775 46999999999998 889999999999999999988776655 77777889999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC-----CCceEEEecCCCeEEEEecc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR-----NANLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~~~~~dg~v~i~d~~ 234 (492)
||+ ..+++++ +.|++||+++++.+..|.. |.++|++++|-.. |..+|.+...+..+.+|-+.
T Consensus 154 ~D~-~~l~~as--~~ik~~~~~~kevv~~ftg----------h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 154 PDG-KILLTAS--RQIKVLDIETKEVVITFTG----------HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCC-CEEEecc--ceEEEEEccCceEEEEecC----------CCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 998 5778776 5899999999999999876 6668899988654 33344455566677888776
Q ss_pred c
Q 011160 235 K 235 (492)
Q Consensus 235 ~ 235 (492)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.9e-11 Score=111.45 Aligned_cols=199 Identities=13% Similarity=0.144 Sum_probs=121.0
Q ss_pred eecCccceEEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEe-ecCCCc--
Q 011160 56 KLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADGQ-- 129 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~-- 129 (492)
.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... + ..........+|+| +++.|+. .+.+|.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSP--DG~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSP--DGKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECC--CCCEEEEEEeCCCCeE
Confidence 344567788899999999998876542 368889998876532 2 12223345789999 9998765 455664
Q ss_pred EEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC--cEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
|.++|+.++.... +..+.......+|+|++..++++...++ .|+++|+.+++.... ... .....
T Consensus 288 Iy~~dl~tg~~~~---lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~----------g~~~~ 353 (448)
T PRK04792 288 IYVVDIATKALTR---ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE----------GEQNL 353 (448)
T ss_pred EEEEECCCCCeEE---CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC----------CCCCc
Confidence 7777776654322 4445556678899999965555554444 466677777664332 111 11123
Q ss_pred EEEEcCCCCceEEEe-cCCC--eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C-C
Q 011160 208 AIAIDPRNANLFAVA-GSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-E 282 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~-~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-~ 282 (492)
..+|+|++ +.|+.. ..++ .|.++|+.+++... +... .......|+|+|+.|+..+ . +
T Consensus 354 ~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~~---------------lt~~--~~d~~ps~spdG~~I~~~~~~~g 415 (448)
T PRK04792 354 GGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQV---------------LTST--RLDESPSVAPNGTMVIYSTTYQG 415 (448)
T ss_pred CeeECCCC-CEEEEEEecCCceEEEEEECCCCCeEE---------------ccCC--CCCCCceECCCCCEEEEEEecCC
Confidence 46899984 555544 3344 45556776654211 0000 0112347999999877655 2 3
Q ss_pred --cEEEEecC
Q 011160 283 --FIYLFTQD 290 (492)
Q Consensus 283 --~i~~~d~~ 290 (492)
.+++++..
T Consensus 416 ~~~l~~~~~~ 425 (448)
T PRK04792 416 KQVLAAVSID 425 (448)
T ss_pred ceEEEEEECC
Confidence 36777764
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=8.5e-13 Score=131.41 Aligned_cols=187 Identities=18% Similarity=0.225 Sum_probs=148.5
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEE
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (492)
.|.-.+.+||+.||.|++|....++.+.. .+..|. ..|+.+.|+.+|+.+..+..||.+.
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~-------------------~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVC-------------------FRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEE-------------------eeccCc-chhhhhhhcccCCceeeeccCCcee
Confidence 46678899999999999999988776621 122233 8899999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec---CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA---ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
+|.+. .+..... +.|.......+|. +..+++++ .++.+.+||..-....... -..|.+.++++++.|..
T Consensus 2277 l~q~~-pk~~~s~-qchnk~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~- 2348 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSW-QCHNKALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKH- 2348 (2439)
T ss_pred ecccC-Ccceecc-ccCCccccceeee----ehhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcc-
Confidence 99977 4444444 6798899999995 36777765 4689999997544332211 37899999999999998
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
++|++|+.+|.|++||++..+....++. ++ . ..+|++|+..|.++||++....++...
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~-------------------~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA-------------------LD-T-REYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh-------------------hh-h-hheeeccCcccceEEEEccccchhhcC
Confidence 6999999999999999999888776641 33 2 579999999999999999987766553
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.44 E-value=6.1e-12 Score=103.11 Aligned_cols=229 Identities=14% Similarity=0.217 Sum_probs=147.5
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeee---ccCcC------------cceEEEEecCCCCCceEEe
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSF---HSGHN------------DNVFQAKIMPFTDDRSIVT 123 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~------------~~v~~~~~~~~~~~~~l~~ 123 (492)
....|+++.|...|.||++|...|.|.+|.-+... +...+ +.+|. ..|..+.|...+....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999754322 11111 13332 3578888876333455677
Q ss_pred ecCCCcEEEEecccCCee----------------------------------------eeE-EeecCCCceEEEEEcCCC
Q 011160 124 CAADGQVRHAQILERGGV----------------------------------------ETK-LLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~~~~----------------------------------------~~~-~~~~~~~~v~~i~~~~~~ 162 (492)
.+.|.+|++|.+...... +.+ ....|...|+++.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999998644110 000 113577788999999887
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
. .++ ...|-.|.+|+++-......+.-.. ++....-..-|++..|+|...+.+...+..|.|++-|+|+..+....
T Consensus 185 e-t~l-SaDdLrINLWnl~i~D~sFnIVDiK--P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 185 E-TLL-SADDLRINLWNLEIIDGSFNIVDIK--PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred h-eee-eccceeeeeccccccCCceEEEecc--CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 3 444 4567789999987544322221111 11100022357889999987778888889999999999965432110
Q ss_pred C--CCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCC
Q 011160 243 D--FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (492)
Q Consensus 243 ~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~ 293 (492)
. +...... .-.....+-...|..+.|+++|++|++-.--++++||++..+
T Consensus 261 ~klfe~~~D~-v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 261 KKLFELTIDG-VDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhccCc-ccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 0 0000000 011122233467889999999999999988899999998753
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.4e-10 Score=102.68 Aligned_cols=276 Identities=12% Similarity=0.111 Sum_probs=176.0
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC-----------CCcEEE
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----------DGQVRH 132 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------dg~v~i 132 (492)
=+-+.|||-|.||+|--.-| |.+|--.+...++.| .|. .|.-+.||| ..++|+|-+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp-~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHP-GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCC-CceeeecCC--ccceEEEecCCccccCcccCCCceEEE
Confidence 45689999999999998876 899987777777777 454 588999999 9999998663 157999
Q ss_pred EecccCCeeeeEEeecCCCceE-EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEE
Q 011160 133 AQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
||+.+|..............+. -..|+.|+ ++++.-.. .+|.||+...-.++..-.. .-..|..+.|
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Ksl----------ki~gIr~Fsw 354 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSL----------KISGIRDFSW 354 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccccc----------CCccccCccc
Confidence 9999998765533322222332 35799998 46665554 5799998766433322111 2336888999
Q ss_pred cCCCCceEEEecC-----CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC----
Q 011160 212 DPRNANLFAVAGS-----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE---- 282 (492)
Q Consensus 212 ~p~~~~~l~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---- 282 (492)
+|. +++||.=.. -..+.+..+.+++.+.... -++-.=..+-|-.+|.+|+.--+.
T Consensus 355 sP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~n---------------lfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 355 SPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTKN---------------LFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred CCC-cceEEEEcccccCCcceEEEEecCccceeeecc---------------ceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 997 566663221 1234555555444322211 112222346677888888764321
Q ss_pred -------cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC
Q 011160 283 -------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (492)
Q Consensus 283 -------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g 355 (492)
++.|+.++... .++..+.-.. .|...+| .|.|
T Consensus 419 ~~~g~f~n~eIfrireKd-------------------------------------Ipve~velke---~vi~FaW-EP~g 457 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKD-------------------------------------IPVEVVELKE---SVIAFAW-EPHG 457 (698)
T ss_pred cccceEeeEEEEEeeccC-------------------------------------CCceeeecch---heeeeee-ccCC
Confidence 24555554421 1122222111 2778888 9999
Q ss_pred cEEEEeec---cCeEEEEecCC-C---eeeEEEecCCceeEEEeecCCCCeEEEe---eCCCCEEEeccCC
Q 011160 356 EYVVSGSD---CGRIFIWKKKG-G---ELIRVIEADRHVVNCIEPHPHSTVLASS---GIESDIKILTPNA 416 (492)
Q Consensus 356 ~~l~sg~~---dg~i~iwd~~~-~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~---~~dg~i~iw~~~~ 416 (492)
..+++-+. ..++.+|.+++ . +++..+.. ...+.+.|+|.|++++.+ |..|.+.++|..-
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 88776543 35788998763 2 33444433 347889999999988766 4468999999984
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=9.3e-12 Score=103.44 Aligned_cols=252 Identities=17% Similarity=0.228 Sum_probs=173.0
Q ss_pred ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEe
Q 011160 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (492)
Q Consensus 100 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd 179 (492)
..||...++....-| ...-+++.+.|.+++||--+...............+++++.+.++. ..|++|-..|++.-+.
T Consensus 20 ~eG~~d~vn~~~l~~--~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIP--KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFA 96 (404)
T ss_pred hcCchhhhhhheecc--CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEE
Confidence 478999999988888 7788999999999999976554332222233345788999999988 6789999999998887
Q ss_pred CCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCC
Q 011160 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (492)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (492)
+...-....+.. ....|...+..+-|+-. ..++++.+.|..+.---.+.+..++...+..+.
T Consensus 97 ~sedfnkm~~~r------~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~----------- 158 (404)
T KOG1409|consen 97 LSEDFNKMTFLK------DYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA----------- 158 (404)
T ss_pred hhhhhhhcchhh------hhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEeeccC-----------
Confidence 653221111100 11116668889999876 678999998887766555555544332221100
Q ss_pred cccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec
Q 011160 260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (492)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (492)
+++.+.-. +...|. .+.|.+..+... ....+.++.+
T Consensus 159 -----t~~~~d~~--~~fvGd~~gqvt~lr~~~~------------------------------------~~~~i~~~~~ 195 (404)
T KOG1409|consen 159 -----SALQFDAL--YAFVGDHSGQITMLKLEQN------------------------------------GCQLITTFNG 195 (404)
T ss_pred -----CCCceeeE--EEEecccccceEEEEEeec------------------------------------CCceEEEEcC
Confidence 00000000 111222 223333222211 1456778889
Q ss_pred cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCee-eEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL-IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 339 ~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
|... +.++.| .|..++|.+|..|..|.+||+.-.+- ..++.+|...|..++.-+--+.|++++.||.|.+|+.+..
T Consensus 196 h~~~--~~~l~W-d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 196 HTGE--VTCLKW-DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred cccc--eEEEEE-cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 9987 889998 99999999999999999999965543 3677899999999999888899999999999999999765
Q ss_pred C
Q 011160 418 D 418 (492)
Q Consensus 418 ~ 418 (492)
.
T Consensus 273 r 273 (404)
T KOG1409|consen 273 R 273 (404)
T ss_pred e
Confidence 3
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=2.7e-10 Score=99.89 Aligned_cols=285 Identities=16% Similarity=0.144 Sum_probs=182.6
Q ss_pred ecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC--------
Q 011160 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG-------- 128 (492)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-------- 128 (492)
+..-.-++..++|||.|.+|++....| |.+|.-.....+..+ .| ..|..+.|+| .+++|.+-+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~-~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF--RH-PDVKYLDFSP--NEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeee--ec-CCceecccCc--ccceeeeeccCCccChhhcc
Confidence 333566889999999999999987765 999998877766665 23 4699999999 999999877543
Q ss_pred -------cEEEEecccCCeeeeEEeecCCCceE-EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcc
Q 011160 129 -------QVRHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (492)
Q Consensus 129 -------~v~iw~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (492)
.+.+||+.++..+............. -+.|+-+.. +++-. ....++|+++ ++... .......
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~-~~p~~~l------ 171 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK-YVARV-VGSSLYIHEI-TDNIE-EHPFKNL------ 171 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch-hhhhh-ccCeEEEEec-CCccc-cCchhhc------
Confidence 49999999988776633322222244 567777763 33322 3356999997 43322 1111111
Q ss_pred eeecceEEEEEcCCC-CceEEE-----ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC
Q 011160 201 MTVVNLNAIAIDPRN-ANLFAV-----AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (492)
Q Consensus 201 ~~~~~v~~~~~~p~~-~~~l~~-----~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (492)
....+....|+|.+ +..|+. ....+.+++|.+..+..+....+ ....-..+.|.+.|+
T Consensus 172 -r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---------------fk~~~~qLkW~~~g~ 235 (561)
T COG5354 172 -RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---------------FKVSGVQLKWQVLGK 235 (561)
T ss_pred -cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---------------EeecccEEEEecCCc
Confidence 23468888999962 233342 45778899999876543322111 122234678899998
Q ss_pred eeEeec------------CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccc
Q 011160 275 LLVSYN------------DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342 (492)
Q Consensus 275 ~l~~~~------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (492)
+|++-. ..+++++++... .+.....-.++
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---------------------------------------~i~V~~~~~~p 276 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITER---------------------------------------SIPVEKDLKDP 276 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccc---------------------------------------ccceecccccc
Confidence 775421 134777777631 11111122333
Q ss_pred eeeeeEEeecCCCcEEEE--eeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCC---CCEEEeccCCC
Q 011160 343 VTVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAA 417 (492)
Q Consensus 343 ~~v~~~~~~s~~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 417 (492)
|...+| .|.++.+++ |-.+..+.++|+... +...+ ....=+.+.|+|.+++++.++-| |.|-+|+..+.
T Consensus 277 --Vhdf~W-~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 277 --VHDFTW-EPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred --ceeeee-cccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 888998 999887665 457788999998554 33333 33445667788888888887665 57888887664
Q ss_pred C
Q 011160 418 D 418 (492)
Q Consensus 418 ~ 418 (492)
.
T Consensus 351 f 351 (561)
T COG5354 351 F 351 (561)
T ss_pred e
Confidence 3
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.41 E-value=4.7e-11 Score=97.20 Aligned_cols=207 Identities=13% Similarity=0.035 Sum_probs=143.6
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceee-eeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
..++.|++.+..++++..+|.+.+-+........ +..++|.-+++-..|+.. +.+.+++|+.|+.+..||++.++.-.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCccee
Confidence 4578889989889999999999855544333322 244889999999999873 56788999999999999999554333
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE
Q 011160 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (492)
-.....|...|.+|.-+|..+.++++|+.|-.|++||.++ ++++..-. ..+.|..+.++|.....++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-----------v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-----------VGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-----------cccceEEEEecchhhhHHHH
Confidence 2335568889999999998888999999999999999995 44443322 34679999999974444455
Q ss_pred ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEE-EEecCCC
Q 011160 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIY-LFTQDMG 292 (492)
Q Consensus 222 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~-~~d~~~~ 292 (492)
++.-.-.+|.+......... ........|.+-...-.|.....+|++++ +..++ +|-.-++
T Consensus 272 ~CMh~G~ki~~~~~~~~e~~----------~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDKVLEFQ----------IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHhcCceEEEecccccchh----------eeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 55555577777765542210 11223334555566666655556788876 55544 7765543
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.8e-10 Score=104.62 Aligned_cols=241 Identities=11% Similarity=0.111 Sum_probs=138.4
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCce--E-EeecCCC--cEEEEecccCCeeeeEEeecCCCceEEEE
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS--I-VTCAADG--QVRHAQILERGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~v~~i~ 157 (492)
..|.+.|...+.. ..+ ......+..-+|+| ||+. + ++...+| .|.+.++..++.... ..........+
T Consensus 165 ~~l~~~d~dG~~~-~~l-t~~~~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l---t~~~g~~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNL-RPL-TQEHSLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI---LALQGNQLMPT 237 (428)
T ss_pred ceEEEEcCCCCCc-eEc-ccCCCCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceEe---ecCCCCccceE
Confidence 4677778765544 334 33455677889999 9875 2 2444443 577778776654433 33344455689
Q ss_pred EcCCCCcEEEEEcCCC----cEEEEeCCCCC--ccceeecCCCCCCCcceeecceEEEEEcCCCCceEE-EecCCCeEEE
Q 011160 158 IEPGSPHVFYTCGEDG----LVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEYTRL 230 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~v~i 230 (492)
|+|||.+++++...+| .+.+|++..+. ....+... ........+|+|+ ++.|+ +...+|...+
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~---------~~~~~~~p~wSPD-G~~Laf~s~~~g~~~l 307 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE---------AFGTQGNPSFSPD-GTRLVFVSNKDGRPRI 307 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC---------CCCCcCCeEECCC-CCEEEEEECCCCCceE
Confidence 9999975555554333 34446766532 11111110 1112356799999 55554 4445665555
Q ss_pred Eec--ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--C--cEEEEecCCCCCCCCCCCCCCC
Q 011160 231 YDI--RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVS 304 (492)
Q Consensus 231 ~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~ 304 (492)
|.+ ..... ...........+....|+|+|+.|+..+. + .|++||+.++..
T Consensus 308 y~~~~~~~g~--------------~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---------- 363 (428)
T PRK01029 308 YIMQIDPEGQ--------------SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---------- 363 (428)
T ss_pred EEEECccccc--------------ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------
Confidence 543 21110 00111112345677899999998876652 2 599999877521
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec---cCeEEEEecCCCeeeEEE
Q 011160 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~---dg~i~iwd~~~~~~~~~~ 381 (492)
..+..... .+....| +|||++|+..+. ...|+++++..++.....
T Consensus 364 -----------------------------~~Lt~~~~--~~~~p~w-SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 364 -----------------------------YQLTTSPE--NKESPSW-AIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred -----------------------------EEccCCCC--CccceEE-CCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 11211111 1456777 999998875432 357999999877654443
Q ss_pred ecCCceeEEEeecCCC
Q 011160 382 EADRHVVNCIEPHPHS 397 (492)
Q Consensus 382 ~~h~~~v~~~~~s~~~ 397 (492)
...+.+...+|+|-.
T Consensus 412 -~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 -IGSGEKRFPSWGAFP 426 (428)
T ss_pred -cCCCcccCceecCCC
Confidence 344557788888753
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=8.3e-10 Score=96.12 Aligned_cols=191 Identities=15% Similarity=0.132 Sum_probs=124.1
Q ss_pred cCCCcEEEEeCCCCCccceeecCCCCCCCc-ceeecceEEEE-EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCC
Q 011160 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRN-YMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 247 (492)
+..|.|.+||..+......--..+...... .....+..-+. |++-+|.+++..+. |...+.+...+-
T Consensus 284 q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~---------- 352 (668)
T COG4946 284 QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY---------- 352 (668)
T ss_pred ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe----------
Confidence 345779999988765433211111110000 00001111111 44445778887765 556565543321
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC-cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (492)
.+.-++...|.-..+.-+++-++.+. ++ .+-+|+..++.
T Consensus 353 -------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-------------------------------- 393 (668)
T COG4946 353 -------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-------------------------------- 393 (668)
T ss_pred -------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--------------------------------
Confidence 12223456677777777776666666 44 79999998752
Q ss_pred CCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeC
Q 011160 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
.+.+...-+. |.++.. +|+|++++.+.....|.+.|+.+|+....-+...+-|+.+.|||+++++|-+--
T Consensus 394 -------~kr~e~~lg~--I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP 463 (668)
T COG4946 394 -------VKRIEKDLGN--IEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP 463 (668)
T ss_pred -------EEEeeCCccc--eEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecC
Confidence 2333333333 788888 999999999999999999999999876555666678999999999999997765
Q ss_pred CC----CEEEeccCCCCCC
Q 011160 406 ES----DIKILTPNAADRA 420 (492)
Q Consensus 406 dg----~i~iw~~~~~~~~ 420 (492)
+| .|+++|+.+++.-
T Consensus 464 ~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 464 EGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred cceeeeeEEEEecCCCeEE
Confidence 54 7999999987653
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=8.1e-11 Score=107.41 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=164.4
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.++....++|.|+.||.+++-.+.+...-.. ..++ .....+..-++|.||.+.|.-+.|+.+.+.|-|...+|
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~-~~gl-----aa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLN-KSGL-----AAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCccc-cccc-----ccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 56677888999999999999998875432211 1111 12334556689999999999999999999999999999
Q ss_pred eEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 84 RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
.|.||-+-.|.-..... ....+-|.+|+|+. +|..++..-.||.|.+=.+... .+.-+.+.+ .....+.|++|.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGN-RIWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccc-eecchhcch--heccceeecccH
Confidence 99999998876543332 33556789999999 9999999999999888776543 332222332 223468899998
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccce-eec----CCCCCCCcceeecceEEEEEc--------CCCCceEEEecCCCeEE
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATEL-FTC----RPIDDRRNYMTVVNLNAIAID--------PRNANLFAVAGSDEYTR 229 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~~~~~~~~~~~v~~~~~~--------p~~~~~l~~~~~dg~v~ 229 (492)
..++.+-..|.+.+||.+..-..+. ..+ ..... . ....+..+.|. |+ .-.|+++..+|.+.
T Consensus 169 -~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s--~--~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 169 -EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS--N--FPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQ 242 (1189)
T ss_pred -HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec--C--CCccccceeeccCccccCCCC-CCEEEEEEcCceeh
Confidence 4667777889999999764322111 000 00000 0 11124444443 34 34788888888887
Q ss_pred EEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
|..-.+... |..+ .....+....|+++|..|+.++.+
T Consensus 243 iMR~eND~~--------------Pvv~--dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDPE--------------PVVV--DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCCC--------------CeEE--ecccEeecceecCCCcEEEEccCc
Confidence 765444321 1111 113568889999999999988743
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=4.5e-11 Score=106.73 Aligned_cols=190 Identities=11% Similarity=0.132 Sum_probs=142.5
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEE------cCC-------------CCceEEEecC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI------DPR-------------NANLFAVAGS 224 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~-------------~~~~l~~~~~ 224 (492)
.+++....||.+++|+...++....|..... ..+...+..| +|. +...++-|..
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-------LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchh-------ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 5789999999999999999887766543221 1112222222 221 2347888999
Q ss_pred CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCC
Q 011160 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV 303 (492)
Q Consensus 225 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 303 (492)
.|.|.+|++..++.... .....|.+.|.++.++.+-..|.+++ +..+..|+....
T Consensus 79 ~g~v~~ys~~~g~it~~-------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----------- 134 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAK-------------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----------- 134 (541)
T ss_pred CccEEEEEecCCeEEEE-------------EecCCCCCcceeeecccccCceEecCCceeEEEEecccc-----------
Confidence 99999999998875332 12356889999999999988999888 458999998773
Q ss_pred CccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEec
Q 011160 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 383 (492)
...+.+.+.... +.++++ +|||+.+++++ +.|++||+++++.+..|.+
T Consensus 135 ---------------------------~~~~~~~~~~~~--~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftg 182 (541)
T KOG4547|consen 135 ---------------------------VIIRIWKEQKPL--VSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTG 182 (541)
T ss_pred ---------------------------eeeeeeccCCCc--cceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecC
Confidence 344555554443 788998 99999999886 6799999999999999999
Q ss_pred CCceeEEEeecCC-----CCe-EEEeeCCCCEEEeccCC
Q 011160 384 DRHVVNCIEPHPH-----STV-LASSGIESDIKILTPNA 416 (492)
Q Consensus 384 h~~~v~~~~~s~~-----~~~-l~s~~~dg~i~iw~~~~ 416 (492)
|.++|++++|.-+ |.+ |.+...+.-+.+|-++.
T Consensus 183 h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 183 HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999999877 555 44555677788887765
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5.3e-12 Score=111.58 Aligned_cols=177 Identities=20% Similarity=0.287 Sum_probs=127.7
Q ss_pred eeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCC-------ceeeeeccCcCcceEEEEecCCCCCceEEeec
Q 011160 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (492)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 125 (492)
.++.+.||+..|..++--.+.+-+++++.|++|++|.++.. .+..++ ..|+.+|.++.|.. +-++++++
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~--~lr~i~Sc- 802 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLA--DLRSIASC- 802 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeee--ccceeeec-
Confidence 34678899999999988777888999999999999998632 233444 78999999999987 77777765
Q ss_pred CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC-CCcEEEE-EcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYT-CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 126 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
||.|.+||.--+............+.+..+..-++ ...++++ ++...+|+++|.+..+....++.-.... ..
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~-----Pn 876 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG-----PN 876 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC-----Cc
Confidence 68899999866654332111122233344444343 2234444 4778899999999988776665432111 33
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
.-+.+++..|. |+.++.+-.+|.|.+.|.++++.+.
T Consensus 877 a~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 877 ALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred hheeEEEeccC-cchhhHHhcCCcEEEEecCCCceec
Confidence 46789999997 7899999999999999999998554
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=1.9e-11 Score=111.70 Aligned_cols=290 Identities=14% Similarity=0.154 Sum_probs=188.0
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcC--cceEEEEecCCCCCceEEeecCCCcEEEEecccC
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 138 (492)
.+++.++..+|.|+-+|.++.-| +.+-|+...-....++ .|. -.|..+.|+|...-.+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 46788899999999999999877 5566776543333332 232 3577888988544445455444555678998654
Q ss_pred Ce-eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccc-eeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 139 GG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 139 ~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
.. .....+.+|...|+.+.|+|..+.++++++-|-.+..||+++..... .+.. -......+.|+-.++
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~----------w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS----------WRSAASQVKWNYKDP 171 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec----------ccccCceeeecccCc
Confidence 32 22345778999999999999999999999999999999999875432 2211 122456788987766
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC--CCeeEeecCCcEEEEecCCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLG 294 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~i~~~d~~~~~~ 294 (492)
+.+++ +....|.+||++.+.. +.....+|...|+.+.|..- +..+-+..+++++.|+......
T Consensus 172 ~vlas-shg~~i~vwd~r~gs~--------------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 172 NVLAS-SHGNDIFVWDLRKGST--------------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred chhhh-ccCCceEEEeccCCCc--------------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 66654 5667899999998752 33344457778888888763 4455555588999999876422
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE----e-------ec
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS----G-------SD 363 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s----g-------~~ 363 (492)
... .+.. ... .|..-+| -|-|+-.+. | .-
T Consensus 237 e~~------------------------------------~~vt-t~~--piw~~r~-~Pfg~g~~~mp~~G~n~v~~~~c 276 (1081)
T KOG0309|consen 237 ESK------------------------------------RTVT-TNF--PIWRGRY-LPFGEGYCIMPMVGGNMVPQLRC 276 (1081)
T ss_pred ccc------------------------------------eecc-ccC--cceeccc-cccCceeEeccccCCeeeeeccc
Confidence 111 0000 000 0222222 333321111 1 11
Q ss_pred cCeEEEEecCCC-eeeEEEecCCceeEEEeecCCCC----------eEEEeeCCCCEEEeccCCC
Q 011160 364 CGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHST----------VLASSGIESDIKILTPNAA 417 (492)
Q Consensus 364 dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~----------~l~s~~~dg~i~iw~~~~~ 417 (492)
+.....|+..++ +++..+.||...|....|-..+. .|+|-+.|..+++|-+...
T Consensus 277 ~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 277 ENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 222334444433 67889999999887777754322 6999999999999999764
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.3e-09 Score=100.58 Aligned_cols=401 Identities=15% Similarity=0.097 Sum_probs=215.5
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC------------CCEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD------------GDILI 77 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------------~~~l~ 77 (492)
+.++|-|+ ...|-+-|..+-|++ +.+.-|+..|+.+.|.|. .-+||
T Consensus 26 ~GLiAygs-hslV~VVDs~s~q~i---------------------qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 26 SGLIAYGS-HSLVSVVDSRSLQLI---------------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred cceEEEec-CceEEEEehhhhhhh---------------------hccccCccceeEEEeccCCCchhccCccccceeEE
Confidence 45666666 447888887766655 778889999999999873 12678
Q ss_pred EecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCC--ceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEE
Q 011160 78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD--RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (492)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~ 155 (492)
++...|.|.+||...+..+..+ ..|..++..++|-|..+. ..|++-.....+.+|+..+|+.... .........|
T Consensus 84 saD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~ 160 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSC 160 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--cccCCcceee
Confidence 8888999999999988876666 788899999999885433 4566666678999999999887654 2222344556
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCC----ccceeecCCC------------------------------------C
Q 011160 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGA----ATELFTCRPI------------------------------------D 195 (492)
Q Consensus 156 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~------------------------------------~ 195 (492)
+.+.|-.++.+..-+..|.+.+-+.-..+ ..+.++.... .
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 77777544444444444555444321100 0000000000 0
Q ss_pred CCCcc------------------------eeecceEEEEEcCCC-CceEEEecCCCeEEEEecccccccCCC-------C
Q 011160 196 DRRNY------------------------MTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGST-------D 243 (492)
Q Consensus 196 ~~~~~------------------------~~~~~v~~~~~~p~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~-------~ 243 (492)
..+.+ ...+.+.-+.+-|+. ...|++...+|.+.+|-.+......+. .
T Consensus 241 ~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~d 320 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMD 320 (1062)
T ss_pred hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccc
Confidence 00000 011122233444542 357888999999999976653211111 0
Q ss_pred CCCCccccCCCCcCCCcccceEEEEEcCCC-Cee-EeecCCcEEEEecCCCCCCCCCCCCCC-C---ccccccccCCCCC
Q 011160 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELL-VSYNDEFIYLFTQDMGLGPNPPPSSPV-S---TRSEASEMGSDHT 317 (492)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l-~~~~~~~i~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~ 317 (492)
++......|+. .+..+......|.. ..+ +..+++...+|.+.+++.......... - .........-...
T Consensus 321 l~~Q~~~vr~m-----~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~ 395 (1062)
T KOG1912|consen 321 LGEQVHVVRPM-----EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKT 395 (1062)
T ss_pred cccceEEEeec-----hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhc
Confidence 00011111111 11122223334432 222 234567788899886543322111000 0 0000000000111
Q ss_pred CCCCCCCCC-CccccCCceeeccccceeeeeEEeecCCC-------cEEEEeeccCeEEEEecCCCeeeEEEecCCceeE
Q 011160 318 SAASPSTAN-TDVRIAPQVYKGHRNCVTVKGVNFFGPKC-------EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN 389 (492)
Q Consensus 318 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-------~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 389 (492)
.+...+.++ ...+........-.. ..-... .|.| .++|.|...|+|.++|+.++...+.+..|.+.|.
T Consensus 396 ~l~~LS~dg~h~sGs~~~~~~p~p~---~t~~~~-~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vk 471 (1062)
T KOG1912|consen 396 SLISLSDDGSHSSGSTCVRMRPMPE---LTKVEN-DPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVK 471 (1062)
T ss_pred cccchhhcCCCCCCceeeecccCcc---cceeec-CCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhccccccee
Confidence 111111111 000000000000000 011111 2333 3788999999999999999999999999999999
Q ss_pred EEeecCCCCeEE---------EeeCCCCEEEeccCCCCCCccc-------CcccccccccccccccccCch
Q 011160 390 CIEPHPHSTVLA---------SSGIESDIKILTPNAADRATLP-------TNIEQFKPKATRWMHHVLSPE 444 (492)
Q Consensus 390 ~~~~s~~~~~l~---------s~~~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 444 (492)
++.|--..+++- +++.-+.+.+-++.+|....+- ..++.++..+.++...+.|..
T Consensus 472 gleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~ 542 (1062)
T KOG1912|consen 472 GLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRR 542 (1062)
T ss_pred eeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecc
Confidence 999976655432 2222346778888887554442 223334444677776666654
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=2.2e-11 Score=121.64 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=149.7
Q ss_pred cCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc
Q 011160 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (492)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 137 (492)
+.|-..|.++.-+|...+.+||+.||.|++|....+..+..+.......|+.+.|+. .|+.+..+..||.+.+|.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH--QGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc--cCCceeeeccCCceeecccC-
Confidence 345567888888898999999999999999999999988888666668999999998 99999999999999999986
Q ss_pred CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc---CCCcEEEEeCCCCCcccee-ecCCCCCCCcceeecceEEEEEcC
Q 011160 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
.+.. ...+.|.....++.|-.. ++++++ .++.+.+||..-......+ .+ |...++++++-|
T Consensus 2282 pk~~--~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~----------H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2282 PKPY--TSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC----------HDGGATVLAYAP 2346 (2439)
T ss_pred Ccce--eccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeee----------cCCCceEEEEcC
Confidence 3333 236788888888888762 456654 4688999996543322222 22 666899999999
Q ss_pred CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
. ..+|++|+.+|.|++||++..++.... +. +. ...++++++ .|.|+||++..-
T Consensus 2347 ~-~qllisggr~G~v~l~D~rqrql~h~~--------------------~~----~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2347 K-HQLLISGGRKGEVCLFDIRQRQLRHTF--------------------QA----LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred c-ceEEEecCCcCcEEEeehHHHHHHHHh--------------------hh----hh-hhheeeccCcccceEEEEcccc
Confidence 8 789999999999999999988754321 11 33 445777777 789999999874
Q ss_pred C
Q 011160 293 L 293 (492)
Q Consensus 293 ~ 293 (492)
.
T Consensus 2401 ~ 2401 (2439)
T KOG1064|consen 2401 G 2401 (2439)
T ss_pred c
Confidence 3
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.33 E-value=4.3e-09 Score=105.65 Aligned_cols=336 Identities=14% Similarity=0.060 Sum_probs=198.6
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhh-----------------------hhhhccccc-----ccceeeeeee
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTR-----------------------NFALRRRAS-----EDLVLRLGIY 54 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~-----------------------~~~~~~~~~-----~~~~~~~~~~ 54 (492)
.++++||..+|+....+|+|-+-..+ ...+.. +|.+..... .+....-...
T Consensus 125 a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~ 203 (928)
T PF04762_consen 125 AASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDE 203 (928)
T ss_pred EEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcccc
Confidence 36789999999988888888876533 222211 111110000 0000000001
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecC------CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC--
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-- 126 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-- 126 (492)
..+. +...-..|+|-.||.++|+.+. -+.+|||+-+ |...... ..-.+--.+++|.| .|++||+...
T Consensus 204 ~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrP--sG~lIA~~q~~~ 278 (928)
T PF04762_consen 204 GKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRP--SGNLIASSQRLP 278 (928)
T ss_pred Cccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCC--CCCEEEEEEEcC
Confidence 1222 4445568999999999998764 2579999955 6643333 33334456789999 9999998764
Q ss_pred -CCcEEEEecccCCeeeeEEee--cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 127 -DGQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 127 -dg~v~iw~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
...|.+|.-. |-.-....+. .....|..+.|++++ .+|+....|. |.+|-..+..........-. ..
T Consensus 279 ~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-------~~ 348 (928)
T PF04762_consen 279 DRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-------SS 348 (928)
T ss_pred CCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-------CC
Confidence 3456666532 2222222222 345689999999999 5777766554 99999887764332222110 22
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeecCC
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE 282 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~ 282 (492)
..+..+.|+|..+..|...+.+|.+..+++.-.... +-..+|+. ..+++....
T Consensus 349 ~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~--------------------------s~~~~~~D~g~vaVIDG~ 402 (928)
T PF04762_consen 349 ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR--------------------------SPGSSPNDNGTVAVIDGN 402 (928)
T ss_pred CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe--------------------------cCCCCccCceEEEEEeCC
Confidence 234559999987888888888788877766421100 00011222 233444444
Q ss_pred cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee
Q 011160 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
++.+-.++....+.++ ....+.-. ..|..++| ++++..+|+-.
T Consensus 403 ~lllTpf~~a~VPPPM---------------------------------s~~~l~~~---~~v~~vaf-~~~~~~~avl~ 445 (928)
T PF04762_consen 403 KLLLTPFRRAVVPPPM---------------------------------SSYELELP---SPVNDVAF-SPSNSRFAVLT 445 (928)
T ss_pred eEEEecccccCCCchH---------------------------------hceEEcCC---CCcEEEEE-eCCCCeEEEEE
Confidence 6888777764333221 11222221 23889998 99988899999
Q ss_pred ccCeEEEEecCCCee--------eEEEe----------cCCceeEEEeecCCCCeEEEeeCC---CCEEEeccCCC
Q 011160 363 DCGRIFIWKKKGGEL--------IRVIE----------ADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAA 417 (492)
Q Consensus 363 ~dg~i~iwd~~~~~~--------~~~~~----------~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 417 (492)
.||.|.+|....... ...+. .....+..++|..+..+++....+ ..+.++++...
T Consensus 446 ~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 446 SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred CCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 999999998543211 11111 122457889998888776666554 57888887443
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.31 E-value=5.8e-11 Score=94.96 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=106.7
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce-eeeeccCcCcceEEEEecCCCCCceEEeec-----CCC
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-----ADG 128 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----~dg 128 (492)
+.+..|+++-.+-+.+--++.++++..||.+.+++.+.-.. ..++...|.+ -.+.++.. .++.+.++. .-+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~--~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICR--HGNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceee--cccEEecCCcceEeecc
Confidence 44444555444444444567899999999999999765211 1111111211 11122222 344444432 123
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
..+.|+++..+.... .......|++++-+|...+++++|+.||.+.+||.+.......+-. .|+.+++.
T Consensus 160 ~~~a~~~~p~~t~~~--~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~---------ahk~~i~e 228 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIP--SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK---------AHKAEIWE 228 (319)
T ss_pred ceeeecccccccccc--cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH---------Hhhhhhhh
Confidence 456666654332221 1112245999999998888999999999999999998854433211 16778999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
+-|+|.++..|++++.||.+.-||..+
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999999999999864
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.30 E-value=9.8e-10 Score=88.51 Aligned_cols=247 Identities=11% Similarity=-0.038 Sum_probs=162.9
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEc-CCCCEEEEecCCCeEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN-TDGDILISGSDDRRVILW 88 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~d~~i~iw 88 (492)
-..||.|+.-|...+|...+.+... +....|...|+-+.=. -..--+..++.|.++++.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~--------------------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHL--------------------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM 143 (344)
T ss_pred ccEEEeccccceeeeecccCcccce--------------------eeecccccchhhhhhhcccccceeeccCCcceeEE
Confidence 3568889899999999998766541 2222333333222111 112345667888999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee-EEeecCCCceEEEEEcCCCCcEEE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
+++.+.......... -.+.++++++ +++++++.+....|-.|.+........ ......++.-.+..|+... ..|+
T Consensus 144 ~~~~~s~~~~~h~~~-~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FA 219 (344)
T KOG4532|consen 144 VVSGDSNKFAVHNQN-LTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFA 219 (344)
T ss_pred EEecCcccceeeccc-cceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEE
Confidence 887665544432111 2388999999 999999999999999999976544332 2344455666788999887 5789
Q ss_pred EEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC-ceEEEecCCCeEEEEecccccccCCCCCCC
Q 011160 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (492)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 246 (492)
++..||++.|||++............... |.+.+..+.|++-|. .+|+..-.-+.+.+.|+++++..+......
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~-----hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTRPH-----HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccCCC-----CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 99999999999999876554443322221 667899999998543 345555566789999999987544322211
Q ss_pred CccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCC
Q 011160 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (492)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (492)
.....+....|..-.|+.++.-+.+.+...+.-|++...
T Consensus 295 -------d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 295 -------DVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred -------cccccccccccccccccCCCcccccccchhhheeecccc
Confidence 111122223477778888777777777777777777653
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=2.9e-09 Score=98.33 Aligned_cols=277 Identities=10% Similarity=0.011 Sum_probs=161.5
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
+..+++++.++.|..+|..+|+.+..+. -.......+.. ++..++.++.+|.+..+|..+++......+. ..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~ 136 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---SE 136 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---ce
Confidence 6678888889999999999999877652 22211112222 5677888888999999999888776543222 22
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
+.+.-...++ .++.++.+|.++.||.++++.+..+........ .. ...+.... +..++.+..++.+..+|
T Consensus 137 ~~~~p~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----~~-~~~sp~~~---~~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 137 VLSPPLVANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALT----LR-GSASPVIA---DGGVLVGFAGGKLVALD 206 (377)
T ss_pred eecCCEEECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCcee----ec-CCCCCEEE---CCEEEEECCCCEEEEEE
Confidence 2211111123 567778899999999999988766543211000 00 00111121 13677788889999999
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccce-EEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccc
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (492)
.++++.........+......... ..+ ....+ .++.++++..++.++.||..+++....
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~-----~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~-------------- 266 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERL-----VDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWK-------------- 266 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhh-----hccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEe--------------
Confidence 988875433221111000000000 000 00111 134444444577899999987643221
Q ss_pred cCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCc-eeEE
Q 011160 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH-VVNC 390 (492)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~ 390 (492)
... .. .... ...+..++.++.+|.|+.+|..+|+.+........ ...+
T Consensus 267 ------------------------~~~-~~---~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 267 ------------------------RDA-SS---YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred ------------------------ecc-CC---ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc
Confidence 110 00 1111 12456777788899999999999987755432111 1222
Q ss_pred EeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 391 IEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 391 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
... .+..|++++.+|.|++++..+++..
T Consensus 316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 316 PAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 222 3668888999999999999888664
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.29 E-value=2.8e-09 Score=92.91 Aligned_cols=173 Identities=15% Similarity=0.117 Sum_probs=128.1
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC-eEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR-RVI 86 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~-~i~ 86 (492)
-+|.+++..+ -|.+-|.+...|..+ --+|.+.|.-..+..+++-++.|..|| .+-
T Consensus 330 ~~Gd~ia~VS-RGkaFi~~~~~~~~i-----------------------qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~ 385 (668)
T COG4946 330 VNGDYIALVS-RGKAFIMRPWDGYSI-----------------------QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLG 385 (668)
T ss_pred CCCcEEEEEe-cCcEEEECCCCCeeE-----------------------EcCCCCceEEEEEccCCcceEEeccCCceEE
Confidence 4567766666 355666655544433 236888899999988888899999999 899
Q ss_pred EEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEE
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 166 (492)
|+|..+++.. .+ ...-+.|.++..+| +|++++++.....+.+.|+.++..... -....+-|+.+.|+|++ .++
T Consensus 386 iyd~~~~e~k-r~-e~~lg~I~av~vs~--dGK~~vvaNdr~el~vididngnv~~i--dkS~~~lItdf~~~~ns-r~i 458 (668)
T COG4946 386 IYDKDGGEVK-RI-EKDLGNIEAVKVSP--DGKKVVVANDRFELWVIDIDNGNVRLI--DKSEYGLITDFDWHPNS-RWI 458 (668)
T ss_pred EEecCCceEE-Ee-eCCccceEEEEEcC--CCcEEEEEcCceEEEEEEecCCCeeEe--cccccceeEEEEEcCCc-eeE
Confidence 9999887753 44 45667899999999 999999999999999999998876543 34455789999999999 577
Q ss_pred EEEcCCC----cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 167 YTCGEDG----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 167 ~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
+-+--+| .|+++|+.+++...... ..+.=.+-+|.|+ +++|..-+
T Consensus 459 AYafP~gy~tq~Iklydm~~~Kiy~vTT-----------~ta~DfsPaFD~d-~ryLYfLs 507 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGKIYDVTT-----------PTAYDFSPAFDPD-GRYLYFLS 507 (668)
T ss_pred EEecCcceeeeeEEEEecCCCeEEEecC-----------CcccccCcccCCC-CcEEEEEe
Confidence 8776554 68999999887654432 1112345678888 56665443
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=6.6e-09 Score=106.42 Aligned_cols=286 Identities=11% Similarity=0.062 Sum_probs=161.3
Q ss_pred EEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec--------------CCCceEEEEEcCCCCcEEEEEcCCC
Q 011160 108 FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK--------------HQGRAHKLAIEPGSPHVFYTCGEDG 173 (492)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~~l~~~~~dg 173 (492)
..+++.+. ++..+++-..++.|++||... ..+.. +.. .-.....+++.+++..++++-...+
T Consensus 571 ~gvavd~~-~g~lyVaDs~n~rI~v~d~~G-~~i~~--ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 571 GKLAIDLL-NNRLFISDSNHNRIVVTDLDG-NFIVQ--IGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred ceEEEECC-CCeEEEEECCCCeEEEEeCCC-CEEEE--EccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 35777661 355666667788999999753 33221 111 1123578999998743444445567
Q ss_pred cEEEEeCCCCCccceeecCCCCC--CCc-----ceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCC
Q 011160 174 LVQHFDLRTGAATELFTCRPIDD--RRN-----YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (492)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~--~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 246 (492)
.|+++|+.++... .+....... ..+ ...-.....++++|+++.++++.+.++.|++||..++.......-+.
T Consensus 647 ~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 647 ALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred eEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 8999998776432 221110000 000 00012346799999657788888889999999987764321000000
Q ss_pred CccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
...... .......-.....++++|+++.|+++. ++.|++||+.++.........+. .+. .+.....
T Consensus 726 ~~~~~g-~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~---------~~~--~l~~fG~ 793 (1057)
T PLN02919 726 ERNLNG-SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT---------FSD--NLFKFGD 793 (1057)
T ss_pred cccCCC-CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc---------cCc--ccccccC
Confidence 000000 000001123467799999998555444 45899999876431100000000 000 0000000
Q ss_pred CCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe-------------cCCceeEEE
Q 011160 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-------------ADRHVVNCI 391 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~~ 391 (492)
.+. ......+ .+ -.++++ +++|+++++-..++.|++||..++....... +.-.....+
T Consensus 794 ~dG--~g~~~~l-~~-----P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 794 HDG--VGSEVLL-QH-----PLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred CCC--chhhhhc-cC-----CceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 000 0000001 11 356777 9999999998999999999998776553221 111257889
Q ss_pred eecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 392 EPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 392 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
+++++|+++++-+.+++|++|++.+++.
T Consensus 865 avd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 865 ALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999988888899999999988764
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=4.5e-09 Score=97.18 Aligned_cols=345 Identities=14% Similarity=0.127 Sum_probs=201.0
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC---CC-CEEEEecCCCeE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT---DG-DILISGSDDRRV 85 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~-~~l~s~~~d~~i 85 (492)
--+||++...|.|.|||...+..+ ..+..|..+|..++|-+ +. ..|+.-....+|
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~---------------------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVI---------------------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhh---------------------hhhcCCCcchhheeeeeccCcchheeEEecCCcEE
Confidence 345888889999999999988776 66888999999999976 33 456666666899
Q ss_pred EEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe-------eeeEE-------------
Q 011160 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-------VETKL------------- 145 (492)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-------~~~~~------------- 145 (492)
.+|+..+|+..... ........|+.+.|+ +.+.+..-+..|.|.+-+.-.... .....
T Consensus 138 vLwntdtG~k~Wk~-~ys~~iLs~f~~DPf-d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKY-DYSHEILSCFRVDPF-DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred EEEEccCCceeecc-ccCCcceeeeeeCCC-CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence 99999999987776 333445677888887 444444444445554444321100 00000
Q ss_pred ----------------------------------------------------eecCCCceEEEEEcCCCC-cEEEEEcCC
Q 011160 146 ----------------------------------------------------LGKHQGRAHKLAIEPGSP-HVFYTCGED 172 (492)
Q Consensus 146 ----------------------------------------------------~~~~~~~v~~i~~~~~~~-~~l~~~~~d 172 (492)
..-..+.+.-+.+.|+.. ..|++.-.|
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n 295 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN 295 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence 000111222334445432 246777788
Q ss_pred CcEEEEeCCCCCccceeecCCCC-CCC--cc----eeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCC--
Q 011160 173 GLVQHFDLRTGAATELFTCRPID-DRR--NY----MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD-- 243 (492)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~-~~~--~~----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-- 243 (492)
|.+.+|-.+.............. ... -| .....+......|.+...++.--.+|.+.+|.+++++......
T Consensus 296 G~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~ 375 (1062)
T KOG1912|consen 296 GRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS 375 (1062)
T ss_pred CeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc
Confidence 88888865432111111000000 000 00 0111223334455545566666678899999998765432211
Q ss_pred ---CCCCccc-----------cCCCCcCCCcccceEEEEEcC-----------CCC-------eeEeec-CCcEEEEecC
Q 011160 244 ---FGQPADY-----------FCPPNLIGDEQVGITGLAFSD-----------QSE-------LLVSYN-DEFIYLFTQD 290 (492)
Q Consensus 244 ---~~~~~~~-----------~~~~~~~~~~~~~i~~~~~s~-----------~~~-------~l~~~~-~~~i~~~d~~ 290 (492)
+..++.. +......++|.....+....| .++ ++|.|+ .|+|.++|+.
T Consensus 376 ~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvs 455 (1062)
T KOG1912|consen 376 SIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVS 455 (1062)
T ss_pred cccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEec
Confidence 1111110 001111233444444444333 222 556676 6789999998
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEE---------Ee
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV---------SG 361 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~---------sg 361 (492)
++ ...+.+..|... |.++.| -....++- +|
T Consensus 456 t~--------------------------------------~v~~~fsvht~~--VkgleW-~g~sslvSfsys~~n~~sg 494 (1062)
T KOG1912|consen 456 TN--------------------------------------AVAASFSVHTSL--VKGLEW-LGNSSLVSFSYSHVNSASG 494 (1062)
T ss_pred ch--------------------------------------hhhhhhcccccc--eeeeee-ccceeEEEeeecccccccc
Confidence 74 344556666665 777777 44433332 33
Q ss_pred eccCeEEEEecCCCeee--EEEe-cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 362 SDCGRIFIWKKKGGELI--RVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 362 ~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+.-+.+.+-|+.+|... +.++ ....+|..+..|..++||+..-.+.-+.+|++.+..
T Consensus 495 ~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 495 GVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred ceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccch
Confidence 34456888899988543 2233 244689999999999999999999999999997653
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.24 E-value=2.5e-10 Score=97.28 Aligned_cols=167 Identities=12% Similarity=0.124 Sum_probs=118.4
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
..+.+++.++++|.+..+....++++...... .++.....+......|+.+..+......-..+.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---------------~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG---------------AKLLDVSCVPKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCc---------------ceeeeEeecccCcceeeeeeccceEEEEeecCC
Confidence 35678899999999988888777777632210 111111222222334444444433333334455
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
...+.+|....+..... -||-..++.++|+| |++.|+++..|..|++-.......+.. ...+|+.-|..+++-++
T Consensus 131 ~~~~di~s~~~~~~~~~--lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~f~Ies-fclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPI--LGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPATFVIES-FCLGHKEFVSTISLTDN 205 (390)
T ss_pred ceeeeeecccccCcchh--hhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcccchhh-hccccHhheeeeeeccC
Confidence 66777777766555443 49999999999999 999999999999999988766554443 35579999999999987
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceee
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFT 190 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 190 (492)
. .|++++.|++|++||+++++.+..+.
T Consensus 206 ~--~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 206 Y--LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c--eeeecCCCCcEEEEecccCCcccccc
Confidence 5 58999999999999999999886554
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=6.3e-08 Score=97.47 Aligned_cols=261 Identities=15% Similarity=0.167 Sum_probs=160.9
Q ss_pred CCCCCCCceEeeccC------cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEE
Q 011160 4 ASNNNNNKRARTSVD------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~------dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 77 (492)
+++-.||.++|+.+- -..+|||+.+ |++.. +-+.-.+--.+++|-|.|++||
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s---------------------tSE~v~gLe~~l~WrPsG~lIA 272 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS---------------------TSEPVDGLEGALSWRPSGNLIA 272 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe---------------------ccccCCCccCCccCCCCCCEEE
Confidence 456789999888764 2689999998 76652 2222233345789999999999
Q ss_pred EecC---CCeEEEEECCCCceeeeec---cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecC-C
Q 011160 78 SGSD---DRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-Q 150 (492)
Q Consensus 78 s~~~---d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~ 150 (492)
+... ...|.+|. ++|.....|. ......|..++|++ ++..||....|. |.+|-..+.....++.+... .
T Consensus 273 ~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~--ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~ 348 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS--DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS 348 (928)
T ss_pred EEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC--CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC
Confidence 8764 34577776 3444433331 23456899999999 999999877655 99999988776655555432 2
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCC----CCC--------cccee----------e---cCCCCCCCcceeecc
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR----TGA--------ATELF----------T---CRPIDDRRNYMTVVN 205 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~----~~~--------~~~~~----------~---~~~~~~~~~~~~~~~ 205 (492)
..+..+.|+|..+..|...+.+|.+..+++. .+. .+..+ . .++...........+
T Consensus 349 ~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~ 428 (928)
T PF04762_consen 349 ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSP 428 (928)
T ss_pred CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCC
Confidence 3455699999988888888877777655432 111 01110 0 111111111224567
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccC--CCCCCCCccc-cCCCCcCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG--STDFGQPADY-FCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
|.+++|+++ +..+++-..||.+.+|......... ...+...... .............+..++|..+..+++....+
T Consensus 429 v~~vaf~~~-~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 429 VNDVAFSPS-NSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred cEEEEEeCC-CCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 999999998 5568888899999999865543211 0000000000 00000111234568889998888776665532
Q ss_pred ----cEEEEecCC
Q 011160 283 ----FIYLFTQDM 291 (492)
Q Consensus 283 ----~i~~~d~~~ 291 (492)
.+.++++..
T Consensus 508 ~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 508 SNQSKIVLVDIDD 520 (928)
T ss_pred cccceEEEEEecc
Confidence 578887743
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.5e-10 Score=97.66 Aligned_cols=215 Identities=11% Similarity=0.029 Sum_probs=144.4
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC-CCe
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-DRR 84 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~ 84 (492)
++...+++.+++-||.++.|.-.--.- ......+..|-+.|.+++.+-++.++.|.+. |..
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~isG------------------vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs 77 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSRISG------------------VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS 77 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCCccc------------------eeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence 345567899999999999997652011 1233567789999999999999999999877 999
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCC-ceEE-eecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
++++|+++-..+.-+....-..-.+...+|. +. ..|+ +...+|.+.++|-....+.....-.-|..+|.++.+.|.+
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skG-d~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKG-DKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEecCCC-CeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 9999998765542221111111112222331 11 1233 3345789999997766554444456789999999999998
Q ss_pred CcEEEEEcCCCcEEEEeCCC------CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 163 PHVFYTCGEDGLVQHFDLRT------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
..+++....|.|.-|..+. .+....++... ....-........++.|+|+ +..+.+-+.|..|++++++++
T Consensus 157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET-DLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred -cceeeccccceeEeecCCCcccCccccccccccccc-hhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccc
Confidence 4778888899999999873 11111111000 00000113456789999998 788999899999999999999
Q ss_pred cccCCC
Q 011160 237 KWDGST 242 (492)
Q Consensus 237 ~~~~~~ 242 (492)
++.+.+
T Consensus 234 klvqei 239 (558)
T KOG0882|consen 234 KLVQEI 239 (558)
T ss_pred hhhhhh
Confidence 876543
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2e-08 Score=92.60 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=122.2
Q ss_pred ceEEEEEcCCCCcEEEEEcC---CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC--C
Q 011160 152 RAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--E 226 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g 226 (492)
.+....|+|+|..+++..+. ...|+++|+.+++...... .........|+|++..++++.+.+ .
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-----------~~g~~~~~~~SPDG~~la~~~~~~g~~ 257 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-----------SQGMLVVSDVSKDGSKLLLTMAPKGQP 257 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-----------CCCcEEeeEECCCCCEEEEEEccCCCc
Confidence 67789999999643443332 3569999998887655433 122345678999955555555544 4
Q ss_pred eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC----cEEEEecCCCCCCCCCCCCC
Q 011160 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 227 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~----~i~~~d~~~~~~~~~~~~~~ 302 (492)
.|.++++..++... +. .+........|+|||+.|+..++. .|+++++.++....
T Consensus 258 ~Iy~~dl~~g~~~~---------------LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r------ 315 (419)
T PRK04043 258 DIYLYDTNTKTLTQ---------------IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ------ 315 (419)
T ss_pred EEEEEECCCCcEEE---------------cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe------
Confidence 67777876654221 11 111122345799999988777643 58888887642110
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc---------CeEEEEecC
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---------GRIFIWKKK 373 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d---------g~i~iwd~~ 373 (492)
.++.+.. ...| +|+|++|+..+.. ..|++.|+.
T Consensus 316 -------------------------------lt~~g~~------~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 316 -------------------------------VVFHGKN------NSSV-STYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred -------------------------------CccCCCc------CceE-CCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 1111111 1255 9999988866543 378888988
Q ss_pred CCeeeEEEecCCceeEEEeecCCCCeEEEeeCC-C--CEEEeccCCCCCCcccC
Q 011160 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-S--DIKILTPNAADRATLPT 424 (492)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g--~i~iw~~~~~~~~~~~~ 424 (492)
+++. ..+... +......|+|||+.|+....+ + .+.+.+++......++.
T Consensus 358 ~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 358 SDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 8765 344333 233468999999987765543 2 46677777765555543
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=3.7e-08 Score=101.05 Aligned_cols=277 Identities=12% Similarity=0.135 Sum_probs=160.2
Q ss_pred EEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeecc-Cc------------CcceEEEEecCCCCCceEEeec-CCCc
Q 011160 65 NTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHS-GH------------NDNVFQAKIMPFTDDRSIVTCA-ADGQ 129 (492)
Q Consensus 65 ~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~------------~~~v~~~~~~~~~~~~~l~~~~-~dg~ 129 (492)
..+++++. +.++++-+.++.|++||.. +..+..+-. +. -.....+++.+ +++.|+++. .++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence 35788774 6677777788999999975 444433311 11 12357889988 777666554 4577
Q ss_pred EEEEecccCCeeeeEEeecC-----------------CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecC
Q 011160 130 VRHAQILERGGVETKLLGKH-----------------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~-----------------~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 192 (492)
|+++|..++. +.. +.+. -.....++++|++..++++.+.++.|++||..++.... +...
T Consensus 648 Ir~id~~~~~-V~t--lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~ 723 (1057)
T PLN02919 648 LREIDFVNET-VRT--LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGD 723 (1057)
T ss_pred EEEEecCCCE-EEE--EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecC
Confidence 9999886643 221 1110 12346899999554677888888999999988765421 1110
Q ss_pred CC-CCCCc----ceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcC-------CCc
Q 011160 193 PI-DDRRN----YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-------GDE 260 (492)
Q Consensus 193 ~~-~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 260 (492)
.. ....+ .........++++|+++.++++-+.++.|++||+.++...... -+.+.......... ...
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-GGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-ecccccCcccccccCCCCchhhhh
Confidence 00 00000 0012345779999985556777778899999999865421000 00000000000000 001
Q ss_pred ccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc
Q 011160 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (492)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (492)
-....+++++++|.++++-. ++.|++||..++....... .+. . ...+ . ....+.
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG---------------~G~--~-G~~d----G---~~~~a~ 857 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG---------------TGK--A-GFKD----G---KALKAQ 857 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec---------------cCC--c-CCCC----C---cccccc
Confidence 12346899999998777666 5589999987653211100 000 0 0000 0 001111
Q ss_pred ccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCee
Q 011160 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (492)
Q Consensus 340 ~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~ 377 (492)
-.. ...+++ +++|+++++-+.++.|++||+.+++.
T Consensus 858 l~~--P~GIav-d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSE--PAGLAL-GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCC--ceEEEE-eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 111 467887 99999999989999999999988765
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=7.9e-10 Score=98.14 Aligned_cols=201 Identities=13% Similarity=0.136 Sum_probs=137.9
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
.+.+-++++++|.+|++|.+... .|.+.+-.+..+++.|+.+|.++.|-.+.++++++ ||.|.+
T Consensus 745 dNENSFiSASkDKTVKLWSik~E--------------gD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPE--------------GDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccccceeeccCCceEEEEEeccc--------------cCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 34566889999999999998731 12223334667889999999999999999988876 678999
Q ss_pred EECCCCceeeeecc-CcCcceEEEEecCCCCCceEEee-cCCCcEEEEecccCCeeeeEEe---ecCCCceEEEEEcCCC
Q 011160 88 WDWKTERVKLSFHS-GHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPGS 162 (492)
Q Consensus 88 wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~ 162 (492)
||.--++.+.+... ...+.+..+...|.-+...++.+ +...+|+++|.+..+....... .+...-+.+++..+.|
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 99887776654421 22233333443341134445444 6788999999998876554322 2344668899999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEE-Eeccccc
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL-YDIRKYK 237 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i-~d~~~~~ 237 (492)
+.++++-.+|.|.+.|.++|+.+...+... .....++- |. ...++....|..+.+ |..-.+.
T Consensus 889 -N~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqlaa-ps-dq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 889 -NKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLAA-PS-DQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred -chhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhcC-ch-hHHHHhhcccceeEeeehhcCCe
Confidence 578999999999999999999876654221 12222322 32 356777777888887 7665543
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.12 E-value=1.1e-07 Score=88.28 Aligned_cols=316 Identities=12% Similarity=0.101 Sum_probs=174.2
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEee-cCc-cceEE-EEEEcCCCCEEEEecCCCeEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKH-RGCVN-TVSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~-~~~~s~~~~~l~s~~~d~~i~ 86 (492)
+.++.+++.+|.|.-+|..+|+.+-+. .+.....+ ... ...+. .+.. ++..++.++.+|.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~-------------~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ 133 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSV-------------DLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVY 133 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEE-------------cCCCcccccccccccccccccEE--ECCEEEEEcCCCEEE
Confidence 556777778899999999999877320 00000000 000 00110 1111 355677788899999
Q ss_pred EEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc---eEEEEEcCCCC
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSP 163 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~---v~~i~~~~~~~ 163 (492)
.+|.++|+.+.+.. .. ..+.+ +|.-.+..++.+..+|.|.-+|..+++............. ..+-... ++
T Consensus 134 ald~~tG~~~W~~~-~~-~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~- 206 (394)
T PRK11138 134 ALNAEDGEVAWQTK-VA-GEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG- 206 (394)
T ss_pred EEECCCCCCccccc-CC-Cceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-
Confidence 99999999877762 22 22222 1111344566777889999999999887655322211000 0011111 22
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC--CCCceEEEecCCCeEEEEecccccccCC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
.++.++.+|.+..+|..+++.............. .......+..+| . +..++.++.+|.+..+|..+++..-.
T Consensus 207 -~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~---~~~~~~~~~~sP~v~-~~~vy~~~~~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 207 -GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT---EIDRLVDVDTTPVVV-GGVVYALAYNGNLVALDLRSGQIVWK 281 (394)
T ss_pred -EEEEEcCCCEEEEEEccCChhhheeccccCCCcc---chhcccccCCCcEEE-CCEEEEEEcCCeEEEEECCCCCEEEe
Confidence 4667788899999999999876654321110000 000000111111 1 23566677889999999998875432
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
..++ ....+.. .++.+++...++.++.+|..++.......
T Consensus 282 ~~~~-----------------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~---------------------- 321 (394)
T PRK11138 282 REYG-----------------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQS---------------------- 321 (394)
T ss_pred ecCC-----------------CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEccc----------------------
Confidence 1110 0011111 13344444447789999988764322100
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEE-EeecCCCCeE
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC-IEPHPHSTVL 400 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l 400 (492)
.+.. .. ..+... .+.+|+.++.+|.|++.|..+|+.+...+.....+.+ ..+ .+..|
T Consensus 322 -------------~~~~-~~---~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l 379 (394)
T PRK11138 322 -------------DLLH-RL---LTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKL 379 (394)
T ss_pred -------------ccCC-Cc---ccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEE
Confidence 0000 00 111111 2457788899999999999999988777644332322 222 24467
Q ss_pred EEeeCCCCEEEecc
Q 011160 401 ASSGIESDIKILTP 414 (492)
Q Consensus 401 ~s~~~dg~i~iw~~ 414 (492)
+.++.||.|+.+++
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 77889999888764
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.2e-09 Score=90.02 Aligned_cols=265 Identities=14% Similarity=0.181 Sum_probs=157.0
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCc------------cceEEEEEEc
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH------------RGCVNTVSFN 70 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~s 70 (492)
.|-|-..|.+|+||...|.|.++..+...-.. .+....+++| ...|..+.|.
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ce----------------ykf~teFQshe~EFDYLkSleieEKin~I~w~ 94 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCE----------------YKFFTEFQSHELEFDYLKSLEIEEKINAIEWF 94 (460)
T ss_pred EEEeccccceEeecCCCceEEEeecccccccc----------------hhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence 35577889999999999999999877433110 1111223333 3568888887
Q ss_pred CCC--CEEEEecCCCeEEEEECCCCce------------------------------------------eeeeccCcCcc
Q 011160 71 TDG--DILISGSDDRRVILWDWKTERV------------------------------------------KLSFHSGHNDN 106 (492)
Q Consensus 71 ~~~--~~l~s~~~d~~i~iwd~~~~~~------------------------------------------~~~~~~~~~~~ 106 (492)
.++ ..++..+.|++|++|.+..... .+.+...|...
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 654 4566667899999998753200 00112457777
Q ss_pred eEEEEecCCCCCceEEeecCCCcEEEEecccCCee-eeEEeecC-----CCceEEEEEcCCCCcEEEEEcCCCcEEEEeC
Q 011160 107 VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKH-----QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (492)
Q Consensus 107 v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~-----~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~ 180 (492)
|.++.|+. +...++++. |=.|.+|++.-.... ...-+..| ...|++..|+|...++|...+..|.|++-|+
T Consensus 175 iNSiS~Ns--D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 175 INSISFNS--DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eeeeeecC--chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 88999987 777777654 678999998654321 11122333 3568899999987778888899999999999
Q ss_pred CCCCccc----ee--ecCCCCCCCcc-eeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC-CCCCC-Ccccc
Q 011160 181 RTGAATE----LF--TCRPIDDRRNY-MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS-TDFGQ-PADYF 251 (492)
Q Consensus 181 ~~~~~~~----~~--~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~-~~~~~ 251 (492)
+...... .+ ...+. ..... .-...|..+.|++. ++++++-. --+|++||++..+..-. ..+.. .....
T Consensus 252 Rq~alcdn~~klfe~~~D~v-~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGV-DVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhhccCchhhhhhccCcc-cchhHHHHhhhhcceEEcCC-CcEEEEec-cceEEEEecccccCCceeechHHHHHHHH
Confidence 8543211 11 11100 00000 02346888999997 67777644 46899999987653111 00000 00000
Q ss_pred CCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecC
Q 011160 252 CPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (492)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (492)
+-. .....-..-..+.|+.+.+.+.+|+ .+..-+|-..
T Consensus 329 ~d~-YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 329 NDV-YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred Hhh-hhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 000 0000001123577888888888888 4566666543
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=3.8e-09 Score=90.21 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=111.6
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec--cCcCcceEEEEecCCCCCceEEee---cCCCcEEEEecccC
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTC---AADGQVRHAQILER 138 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~---~~dg~v~iw~~~~~ 138 (492)
...+..++.+++||.+..+....++++........+. ..-...-+++.|.. +......+ +....+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~--~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR--EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee--ccceEEEEeecCCceeeeeeccccc
Confidence 4455667888999998888887777765443211111 11122334444444 44444443 44455566665543
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
... ...+|-..++.++++||+ ..++++..|..|++-.......+..+.. | |..-|..++.-++ ..
T Consensus 143 ~~~---~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesfcl-------G--H~eFVS~isl~~~--~~ 207 (390)
T KOG3914|consen 143 RCE---PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCL-------G--HKEFVSTISLTDN--YL 207 (390)
T ss_pred Ccc---hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhcc-------c--cHhheeeeeeccC--ce
Confidence 332 367899999999999999 6899999999999988776666655543 2 5557889999875 57
Q ss_pred EEEecCCCeEEEEecccccccCCCCC
Q 011160 219 FAVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
|++++.|+++++||+++++......+
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccch
Confidence 99999999999999999987755433
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=8.6e-08 Score=88.44 Aligned_cols=230 Identities=8% Similarity=0.010 Sum_probs=130.3
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCce-EEeecC---CCcEEEEecccCCeeeeEEeecCCCceEEEEE
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 158 (492)
..|.+=|.+... ...+..+ ..+....|+| +++. ++..+. ...|.++|+.+++.... ....+......|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---t~~~g~~~~~~~ 240 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---ASSQGMLVVSDV 240 (419)
T ss_pred ceEEEECCCCCc-eeEEccC--CCeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEEE---ecCCCcEEeeEE
Confidence 455555554333 3434233 3778899999 9985 554333 35688889877665443 234455667889
Q ss_pred cCCCCcEEEEEcCC--CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC--eEEEEecc
Q 011160 159 EPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIR 234 (492)
Q Consensus 159 ~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~i~d~~ 234 (492)
+|||.+++++.+.+ ..|.++++.++........ ........|+|++..++++....+ .|+++|+.
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~-----------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNY-----------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccC-----------CCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99997666666555 4577888877764332211 111234579999544555544444 57777777
Q ss_pred cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C-------C--cEEEEecCCCCCCCCCCCCCCC
Q 011160 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-------E--FIYLFTQDMGLGPNPPPSSPVS 304 (492)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~-------~--~i~~~d~~~~~~~~~~~~~~~~ 304 (492)
+++.... ...+. ....|+|+|++|+... . + .|.+.++.++.
T Consensus 310 ~g~~~rl--------------t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------- 360 (419)
T PRK04043 310 SGSVEQV--------------VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------- 360 (419)
T ss_pred CCCeEeC--------------ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----------
Confidence 6542110 01111 1248999999887655 2 2 46777776542
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc---CeEEEEecCCCeeeEEE
Q 011160 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVI 381 (492)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d---g~i~iwd~~~~~~~~~~ 381 (492)
.+.+..... .....| +|||+.|+..+.. ..+.+.++ +|.....+
T Consensus 361 ----------------------------~~~LT~~~~---~~~p~~-SPDG~~I~f~~~~~~~~~L~~~~l-~g~~~~~l 407 (419)
T PRK04043 361 ----------------------------IRRLTANGV---NQFPRF-SSDGGSIMFIKYLGNQSALGIIRL-NYNKSFLF 407 (419)
T ss_pred ----------------------------eEECCCCCC---cCCeEE-CCCCCEEEEEEccCCcEEEEEEec-CCCeeEEe
Confidence 111221111 224566 9999988765543 24667777 44444445
Q ss_pred ecCCceeEEEee
Q 011160 382 EADRHVVNCIEP 393 (492)
Q Consensus 382 ~~h~~~v~~~~~ 393 (492)
....+.+...+|
T Consensus 408 ~~~~g~~~~p~W 419 (419)
T PRK04043 408 PLKVGKIQSIDW 419 (419)
T ss_pred ecCCCccCCCCC
Confidence 444444544433
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.11 E-value=5.1e-07 Score=77.89 Aligned_cols=225 Identities=16% Similarity=0.148 Sum_probs=133.2
Q ss_pred EEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEec-CCCCCceEEeecCCCcEEEEecccCCeeee
Q 011160 66 TVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIM-PFTDDRSIVTCAADGQVRHAQILERGGVET 143 (492)
Q Consensus 66 ~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 143 (492)
+++|.+ ++.++++--..+.|..|+..++...... .. ....+++. + ++. |+.+... .+.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~--~~--~~~G~~~~~~--~g~-l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID--LP--GPNGMAFDRP--DGR-LYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE--SS--SEEEEEEECT--TSE-EEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe--cC--CCceEEEEcc--CCE-EEEEEcC-ceEEEecCCCcEEEE
Confidence 568888 7777778778899999999887653322 11 16777777 5 555 4444444 455668877754433
Q ss_pred EEee--c-CCCceEEEEEcCCCCcEEEEEcCC--------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc
Q 011160 144 KLLG--K-HQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (492)
Q Consensus 144 ~~~~--~-~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (492)
.... . .....+.+++.|+| ++.++.... |.|..++.. ++...... .-...+.|+|+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----------~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----------GLGFPNGIAFS 142 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------EESSEEEEEEE
T ss_pred eeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEec-----------CcccccceEEC
Confidence 2231 1 34567899999999 455554332 446666655 33322222 22245677777
Q ss_pred CCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCC
Q 011160 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (492)
Q Consensus 213 p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (492)
|++..++++-+..+.|..|++..... .+... -.++++..
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~------------------------~~~~~----------------~~~~~~~~- 181 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGG------------------------ELSNR----------------RVFIDFPG- 181 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTC------------------------CEEEE----------------EEEEE-SS-
T ss_pred CcchheeecccccceeEEEecccccc------------------------ceeee----------------eeEEEcCC-
Confidence 77433444556666666666643210 00000 00011111
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
... ..-.+++ +.+|++.++....+.|.+++.
T Consensus 182 ----------------------------------------------~~g--~pDG~~v-D~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 182 ----------------------------------------------GPG--YPDGLAV-DSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ----------------------------------------------SSC--EEEEEEE-BTTS-EEEEEETTTEEEEEET
T ss_pred ----------------------------------------------CCc--CCCcceE-cCCCCEEEEEcCCCEEEEECC
Confidence 001 1456777 999998888888999999998
Q ss_pred CCCeeeEEEecCCceeEEEee-cCCCCeEEE
Q 011160 373 KGGELIRVIEADRHVVNCIEP-HPHSTVLAS 402 (492)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s 402 (492)
. |+++..+......+++++| .++.+.|..
T Consensus 213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp T-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred C-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 6 9998888766568999999 466555443
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.09 E-value=8.6e-08 Score=77.59 Aligned_cols=204 Identities=14% Similarity=0.047 Sum_probs=133.1
Q ss_pred EEEEcC-----CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 66 TVSFNT-----DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 66 ~~~~s~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
.+.|-| .-.+||.||..|...+|...+.+....+...|...|+-+.=.- .....+..++.|.++++.++..+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c-d~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC-DLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhc-ccccceeeccCCcceeEEEEecCcc
Confidence 455655 2358999999999999999876654444344544333221111 0223466778888888888865443
Q ss_pred eeeEEeecCCC--ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 141 VETKLLGKHQG--RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 141 ~~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
... .|.. .+.++++++++ .++++.+....|..|.+..... +..+...+ ....-.+..|+.. ..
T Consensus 151 ~~~----~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~--------t~D~gF~~S~s~~-~~ 216 (344)
T KOG4532|consen 151 KFA----VHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAP--------TSDHGFYNSFSEN-DL 216 (344)
T ss_pred cce----eeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecc--------cCCCceeeeeccC-cc
Confidence 222 2222 37899999999 5889999999999998875432 22222222 1223356788886 67
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC---eeEeecCCcEEEEecCCCCC
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---LLVSYNDEFIYLFTQDMGLG 294 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~~~i~~~d~~~~~~ 294 (492)
.+|++..||++.|||++..... ... .......|.+.++.+.|++.|. ++++-.-+.+.+.|+++...
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tp--------m~~--~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATP--------MAE--ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eEEEEecCCcEEEEEecccccc--------hhh--hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 9999999999999999975421 111 1223345889999999998764 23333355799999988644
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.08 E-value=1.2e-07 Score=78.05 Aligned_cols=148 Identities=14% Similarity=0.161 Sum_probs=91.3
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee
Q 011160 66 TVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 141 (492)
.++.+.+|++||..- |..|.|-..++.- ....+.+.....-..++|+| |+..||.+...|+|+++|+......
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccceeE
Confidence 356788999888764 5677776654321 12233333444567899999 9999999999999999998653322
Q ss_pred eeEE----eecCCCceEEEEEcCCC-----CcEEEEEcCCCcEEEEeCCCCC-----ccceeecCCCCCCCcceeecceE
Q 011160 142 ETKL----LGKHQGRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRTGA-----ATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 142 ~~~~----~~~~~~~v~~i~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
.... ...-...|..|.|.+-. ...|++-..+|.++-|-+..+. ....+..... ....|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~-------yp~Gi~ 151 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH-------YPHGIN 151 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-------CCCcee
Confidence 1100 11123567777775532 2356777778888777653321 1122222111 234799
Q ss_pred EEEEcCCCCceEEEecC
Q 011160 208 AIAIDPRNANLFAVAGS 224 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~ 224 (492)
++.++|. .++|++|+.
T Consensus 152 ~~vy~p~-h~LLlVgG~ 167 (282)
T PF15492_consen 152 SAVYHPK-HRLLLVGGC 167 (282)
T ss_pred EEEEcCC-CCEEEEecc
Confidence 9999997 566666654
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=5.5e-07 Score=76.58 Aligned_cols=240 Identities=18% Similarity=0.159 Sum_probs=152.0
Q ss_pred CCCC-CCceEeeccCcce-EEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec--
Q 011160 5 SNNN-NNKRARTSVDKAL-VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS-- 80 (492)
Q Consensus 5 ~~~~-~~~~l~t~~~dg~-v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-- 80 (492)
...| .+..++.+-.-|+ ..+||..+|+.... ..-..-+.|.||. +||+||++|++.-
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-------------~~a~~gRHFyGHg------~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-------------LWAPPGRHFYGHG------VFSPDGRLLYTTEND 71 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-------------EcCCCCCEEecCE------EEcCCCCEEEEeccc
Confidence 3445 5566777776665 55899999987721 1113335566664 8999999999863
Q ss_pred ---CCCeEEEEECC-CCceeeeeccCcCcceEEEEecCCCCCceEEeecC------------------CCcEEEEecccC
Q 011160 81 ---DDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA------------------DGQVRHAQILER 138 (492)
Q Consensus 81 ---~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------------------dg~v~iw~~~~~ 138 (492)
..|.|-|||.. +-..+.++ ..|.-.-..+.+.| +++.|+++.. +-.+.+.|..++
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~p--DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMP--DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcC--CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 35889999998 44555666 56666677888999 9977776532 134555666677
Q ss_pred CeeeeEEe--ecCCCceEEEEEcCCCCcEEEEEcCCCc-------EEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 139 GGVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGEDGL-------VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 139 ~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
+.+....+ ..|...|..+++.++| ..++..-..|. |.+++ .+.....+...... ...-...+-+|
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~---~~~l~~Y~gSI 222 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQ---WRRLNGYIGSI 222 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHH---HHhhCCceEEE
Confidence 66666556 4577889999999998 34444332221 33333 22222222221110 00133468899
Q ss_pred EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEec
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~ 289 (492)
++++++..+.+++=..+.+.+||..++++..... -..+..++..+++ ++++.+.+.+.....
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----------------l~D~cGva~~~~~-f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----------------LPDACGVAPTDDG-FLVSSGQGQLIRLSP 284 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----------------cCceeeeeecCCc-eEEeCCCccEEEccC
Confidence 9999844444556678889999999988655422 2356777777777 777777776555443
Q ss_pred C
Q 011160 290 D 290 (492)
Q Consensus 290 ~ 290 (492)
.
T Consensus 285 ~ 285 (305)
T PF07433_consen 285 D 285 (305)
T ss_pred c
Confidence 3
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=6.1e-07 Score=73.92 Aligned_cols=236 Identities=11% Similarity=0.047 Sum_probs=130.0
Q ss_pred EEecCCCCCceEEeecCCCcEEEEecccCCe--eeeEEee-cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc
Q 011160 110 AKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (492)
Q Consensus 110 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 186 (492)
++.+. +|+.||..- |..|.|-..+..-. +.+..+. ...-.=..++|+||+ .+|+.+...|+|+++|+.....
T Consensus 3 ~~~~~--~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l- 77 (282)
T PF15492_consen 3 LALSS--DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL- 77 (282)
T ss_pred eeecC--CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee-
Confidence 44555 777666654 55565555443211 1111121 112234679999999 5899999999999999886433
Q ss_pred ceeecCCCCCCCcceeecceEEEEEcCCC-----CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcc
Q 011160 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (492)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
..+.... ...+ .-...|..+.|.+-. ...|++-...|.++-|-+..+....- .......+.....
T Consensus 78 f~I~p~~--~~~~-d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y-------~e~hsfsf~~~yp 147 (282)
T PF15492_consen 78 FVIPPAM--SFPG-DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY-------QENHSFSFSSHYP 147 (282)
T ss_pred EEcCccc--ccCC-ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc-------eeeEEEEecccCC
Confidence 2222111 1111 123356666665431 22456666778888777643211000 0000111223346
Q ss_pred cceEEEEEcCCCCeeEeecCC-c-----------EEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcc
Q 011160 262 VGITGLAFSDQSELLVSYNDE-F-----------IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (492)
Q Consensus 262 ~~i~~~~~s~~~~~l~~~~~~-~-----------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (492)
..|.++.++|..++|++++.. . +..|.+-.
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-------------------------------------- 189 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-------------------------------------- 189 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC--------------------------------------
Confidence 689999999998888776622 1 11221111
Q ss_pred ccCCceeeccccceeeeeEEeecCCCcEEEEeeccC------eEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEe
Q 011160 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (492)
-+|..+.+. ...|+ +-.+|.+.+.+...........|..|..||||..||+.
T Consensus 190 ---------------------~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i 247 (282)
T PF15492_consen 190 ---------------------DSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI 247 (282)
T ss_pred ---------------------CCCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence 022222222 11111 12344444333332223345679999999999999999
Q ss_pred eCCCCEEEeccCCCCCC
Q 011160 404 GIESDIKILTPNAADRA 420 (492)
Q Consensus 404 ~~dg~i~iw~~~~~~~~ 420 (492)
..+|.|.+|++.+-.+.
T Consensus 248 h~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 248 HFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred EcCCeEEEEecCcchhh
Confidence 99999999999875544
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.7e-09 Score=89.60 Aligned_cols=272 Identities=11% Similarity=0.059 Sum_probs=177.5
Q ss_pred CcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc-CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC-CCcEEEEe
Q 011160 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFD 179 (492)
Q Consensus 102 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg~i~iwd 179 (492)
-|...|+.+... ..+++.+++.||.++.|.-.. ........+..|...|.+++.+-++ .++.+.+. |..++++|
T Consensus 7 mhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEE
Confidence 477788887665 578999999999999998644 2222223356788889999999998 67788777 99999999
Q ss_pred CCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC--ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcC
Q 011160 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (492)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (492)
+++-..+..++..... ...++..+|... .+.++.-.++.+.++|-..... ......
T Consensus 83 vEn~DminmiKL~~lP---------g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------------q~~~fk 140 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLP---------GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------------QDGYFK 140 (558)
T ss_pred eeccchhhhcccccCC---------CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------------ccceec
Confidence 9987766554432211 111222233111 2333445788999999765431 122334
Q ss_pred CCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCC--CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCc
Q 011160 258 GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP--PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (492)
Q Consensus 258 ~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (492)
.-|..+|..+.++|-+..+++.. .|.|.-|......+... +.... ....-+.
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~-------------------------K~eTdLy 195 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL-------------------------KHETDLY 195 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc-------------------------cccchhh
Confidence 45788999999999999888887 66899998774111000 00000 0000011
Q ss_pred eeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe--------------------------------
Q 011160 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-------------------------------- 382 (492)
Q Consensus 335 ~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~-------------------------------- 382 (492)
.+. .......++.| +|+|..+.+-+.|..|++++..+|++++.+.
T Consensus 196 ~f~--K~Kt~pts~Ef-sp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 196 GFP--KAKTEPTSFEF-SPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred ccc--ccccCccceEE-ccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 111 11112578888 9999999999999999999999887765432
Q ss_pred cCCc-eeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcccCcccc
Q 011160 383 ADRH-VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQ 428 (492)
Q Consensus 383 ~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 428 (492)
.|.. .-+.+.|...+++|+-++.= -|++.++.++...++.+..+.
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~gk~e~ 318 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILGKDEA 318 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEeccchh
Confidence 1111 23556788888888877654 489999998887776555443
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.98 E-value=8.5e-09 Score=82.87 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=98.5
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-CccceEEEEEEcCCCCEEEEecC-----C
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSD-----D 82 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~-----d 82 (492)
.++.++++..||.+-+.+.+.-..+ .++.. -|.+ -.+.++...+++|.+++- -
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~--------------------~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLAL--------------------MSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhh--------------------hhhccccccc-ccccceeecccEEecCCcceEeec
Confidence 4678999999999999998741111 01111 1111 112233334555555432 1
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
+..+.|+++.......- ......|.+++-+|. ....+++|+.||.+-+||++.... ....+..|..+|+.+-|+|..
T Consensus 159 d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPS-KKALDAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeeccccccccccc-ccccccchhhhCCcc-cccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCC
Confidence 23556665533322111 112234999999992 456677888999999999988743 334478899999999999998
Q ss_pred CcEEEEEcCCCcEEEEeCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRT 182 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~ 182 (492)
+.-|++++.||.+..||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 88899999999999999774
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=2.5e-09 Score=62.03 Aligned_cols=37 Identities=30% Similarity=0.680 Sum_probs=35.2
Q ss_pred eeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
+++++++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4588999999999999999999999999999999997
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=2.6e-09 Score=89.25 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=115.6
Q ss_pred EEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCC
Q 011160 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (492)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 246 (492)
++.+.+..|.+-+++++...... ..+.|.++.|... +.++..|+.+|.|..+|++.+..-..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~------------sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~----- 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ------------SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNG----- 289 (425)
T ss_pred ecccccceeEEEEeecccccccc------------cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCC-----
Confidence 55566677888899888644322 4457888999876 67999999999999999998631110
Q ss_pred CccccCCCCcCCCcccceEEEEEcC-CCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 247 PADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
.+ ...--|...|+++.... ++++|.+.+ +++|++||.+..+.
T Consensus 290 ----~~--a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------------------------------ 333 (425)
T KOG2695|consen 290 ----WC--AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------------------------------ 333 (425)
T ss_pred ----cc--eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------------------------------
Confidence 01 11122577888888776 566665555 88999999986422
Q ss_pred CCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCC
Q 011160 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 385 (492)
...+..+.||.+...-.-+-. .+....++++++|...+||.+.+|.++.+++...
T Consensus 334 -----~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 334 -----KKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred -----ccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 234788999987654444444 7778899999999999999999999999887543
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=2.2e-09 Score=62.25 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=37.1
Q ss_pred CeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
|+++.++.+|.+.|++|+|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.2e-08 Score=93.94 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=97.9
Q ss_pred EeecCccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 55 AKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
..+.||...|+.+-|+|+. ..|++++.|-.+..||+.+.....-....-......++|+- ....+.+.+....|.+|
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny--k~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY--KDPNVLASSHGNDIFVW 185 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc--cCcchhhhccCCceEEE
Confidence 5678999999999999965 68899999999999999876543322233445667889987 44444445556789999
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA 185 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 185 (492)
|.+.+..... .+.+|...|+.+.|..---..+.+++.||+|+.||......
T Consensus 186 d~r~gs~pl~-s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 186 DLRKGSTPLC-SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred eccCCCcceE-EecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 9988765543 47779899999999875445689999999999999876543
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.90 E-value=3.9e-06 Score=71.55 Aligned_cols=208 Identities=13% Similarity=0.092 Sum_probs=129.3
Q ss_pred EEEEEEcC-CCCEEEEecCCCe-EEEEECCCCceeeeeccCcCcce--EEEEecCCCCCceEEeecC-----CCcEEEEe
Q 011160 64 VNTVSFNT-DGDILISGSDDRR-VILWDWKTERVKLSFHSGHNDNV--FQAKIMPFTDDRSIVTCAA-----DGQVRHAQ 134 (492)
Q Consensus 64 v~~~~~s~-~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~~~-----dg~v~iw~ 134 (492)
...++.+| ....++.+-.-|+ ..+||..+++....+. ...+.- -.-.|++ +|++|++.-. .|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEE
Confidence 34678888 5566777766554 6789999998877663 222221 2468999 9999998643 48999999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEE------------------cCCCcEEEEeCCCCCccceeecCCCCC
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC------------------GEDGLVQHFDLRTGAATELFTCRPIDD 196 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (492)
... .....-.+..|.-....+.+.|+++ .|+++ +.+.++.+.|..+++.+......+..
T Consensus 84 ~~~-~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~- 160 (305)
T PF07433_consen 84 AAR-GYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL- 160 (305)
T ss_pred CcC-CcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc-
Confidence 982 3333344776766677889999995 44544 12345666677777776664432211
Q ss_pred CCcceeecceEEEEEcCCCCceEEEecCCCe-------EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEE
Q 011160 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-------TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (492)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-------v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (492)
+...+..+++.++ +..++..-..|. |.+++.... ...+. .+......-...+-+|++
T Consensus 161 -----~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~--------~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 161 -----HQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLP--------APEEQWRRLNGYIGSIAA 224 (305)
T ss_pred -----cccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcCCCc--ceecc--------CChHHHHhhCCceEEEEE
Confidence 4557889999987 433332222221 223322211 10000 011111223568999999
Q ss_pred cCCCCeeEeec--CCcEEEEecCCCC
Q 011160 270 SDQSELLVSYN--DEFIYLFTQDMGL 293 (492)
Q Consensus 270 s~~~~~l~~~~--~~~i~~~d~~~~~ 293 (492)
++++.++++.+ .+.+.+||..++.
T Consensus 225 ~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 225 DRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred eCCCCEEEEECCCCCEEEEEECCCCC
Confidence 99999988888 4579999998863
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1e-08 Score=85.88 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=115.9
Q ss_pred EEcC--CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC---eee
Q 011160 68 SFNT--DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG---GVE 142 (492)
Q Consensus 68 ~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~ 142 (492)
+|+- .|-. ++.+.+-.|-+-++++|-. ..| ...+.|.++.|.. .+++++.|+.+|.|..+|++... .-.
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-ccc--ccchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 5542 2334 4455566788889888764 344 3667899999997 78999999999999999998752 112
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc---cceeecCCCCCCCcceeecceEEEEEcCCCCceE
Q 011160 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (492)
.. ...|...|+++....-....|++.+.+|.|++||++.-++ +..+. +|.......-+-.++. ...+
T Consensus 292 a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--------GHvN~~a~l~~~v~~e-eg~I 361 (425)
T KOG2695|consen 292 AQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--------GHVNLSAYLPAHVKEE-EGSI 361 (425)
T ss_pred eE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--------cccccccccccccccc-cceE
Confidence 22 3348899999988773336789999999999999997776 44443 3333333444555666 4577
Q ss_pred EEecCCCeEEEEecccccccCCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
++++.|...+||.++.+.+..+..+
T Consensus 362 ~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEccCeeEEEEEecccCceeeccCC
Confidence 7899999999999999887765443
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=1.6e-09 Score=101.66 Aligned_cols=216 Identities=12% Similarity=0.141 Sum_probs=128.7
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC
Q 011160 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 146 ~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
+..|....+|++|+-+. +.|+.|+..|.|++++..+|.......+ |...++-+.-+.++...|.+++..
T Consensus 1097 frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~nc----------H~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNC----------HQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred hhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccc----------cccccccccccCCcceeeeecccc
Confidence 55677889999999987 5789999999999999999998877776 666889998888854444444433
Q ss_pred C-eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCC--
Q 011160 226 E-YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSS-- 301 (492)
Q Consensus 226 g-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~-- 301 (492)
. -..+|++..-- .+.+. -..-.++.|+...+.-+.|+ .+...+||+.++.....+-..
T Consensus 1166 ~PlsaLW~~~s~~--------------~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG--------------GPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred CchHHHhcccccc--------------Ccccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch
Confidence 3 46789986521 01111 12345678887655544455 568999999998655442211
Q ss_pred CCCccccccccCCCCCCCCC-CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEE
Q 011160 302 PVSTRSEASEMGSDHTSAAS-PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV 380 (492)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 380 (492)
..........++|..+.+.. ...++......+..|..-.. ...-. |+|+|.-++..+ -|||+.+.+++..
T Consensus 1228 ~~~y~~n~a~FsP~D~LIlndGvLWDvR~~~aIh~FD~ft~---~~~G~-FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILNDGVLWDVRIPEAIHRFDQFTD---YGGGG-FHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred hhhhhccccccCCCcceEeeCceeeeeccHHHHhhhhhhee---ccccc-ccCCCceEEeec-----hhhhhHHHHHHhc
Confidence 11111122333333332211 11122222222333332221 11222 377777777655 3788877777665
Q ss_pred EecCCceeEEEeecCCCCeEE
Q 011160 381 IEADRHVVNCIEPHPHSTVLA 401 (492)
Q Consensus 381 ~~~h~~~v~~~~~s~~~~~l~ 401 (492)
...-. -..+.|+..|..+.
T Consensus 1299 VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1299 VPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred Ccccc--ceEEEeccCccchh
Confidence 54332 35677888887554
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.82 E-value=2.8e-06 Score=78.93 Aligned_cols=227 Identities=14% Similarity=0.118 Sum_probs=127.4
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEE-EEEcCCCCEEEEecCCCeEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNT-VSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~d~~i~iw 88 (492)
+.+++.++.+|.+..+|.++|+++-+ .... +.+.+ ... .+..++.+..++.|.-+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~---------------------~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~al 175 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQ---------------------TKVA-GEALSRPVV--SDGLVLVHTSNGMLQAL 175 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCccc---------------------ccCC-CceecCCEE--ECCEEEEECCCCEEEEE
Confidence 45677788899999999999998733 1111 11111 111 13456677788999999
Q ss_pred ECCCCceeeeeccCcCcceEEE--EecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC-----ceEEEEEcC-
Q 011160 89 DWKTERVKLSFHSGHNDNVFQA--KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-----RAHKLAIEP- 160 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~-----~v~~i~~~~- 160 (492)
|..+|+.+..+.... +...+ .-+|.-.+..++.++.+|.+..++..+++......+..... ....+..+|
T Consensus 176 d~~tG~~~W~~~~~~--~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 176 NESDGAVKWTVNLDV--PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred EccCCCEeeeecCCC--CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 999999887763221 11000 01221123356667778899888888876544322211100 011111122
Q ss_pred -CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 161 -GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 161 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
.+ ..++.++.+|.+..+|+.+++.+...... ....+... +..++.++.+|.+..+|..+++..
T Consensus 254 v~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~~------------~~~~~~~~---~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 254 VVG-GVVYALAYNGNLVALDLRSGQIVWKREYG------------SVNDFAVD---GGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred EEC-CEEEEEEcCCeEEEEECCCCCEEEeecCC------------CccCcEEE---CCEEEEEcCCCeEEEEECCCCcEE
Confidence 13 24667778899999999999876543211 01112222 346777788999999999887643
Q ss_pred CCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCC
Q 011160 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~ 293 (492)
-.... .. .....+... -++.+++...++.++.+|..+++
T Consensus 318 W~~~~------------~~--~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 318 WSQSD------------LL--HRLLTAPVL-YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred Ecccc------------cC--CCcccCCEE-ECCEEEEEeCCCEEEEEECCCCC
Confidence 22100 00 001111111 14444444447789999988753
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=7.3e-07 Score=83.49 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=126.1
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
.+.++-|.-+|.|++.+.+ |... +...|+.. ..+|.+++||+.||+|.|-.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~~----------------------~~~~~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNPK----------------------TNFDHSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred cceeeeccccceEEEEecC-Cccc----------------------cccccccc------ccCCceEEEecCCCcEEEee
Confidence 4667888888888888776 3221 11223333 55799999999999999999
Q ss_pred CCCCceeeeeccCcCcceEEEEecCCCC-----CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCc
Q 011160 90 WKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
+.+.+...++ ....++.+++++| + .+.+++|+..| +.++.-.--+......+....++|.++.|.. +
T Consensus 100 l~~~~~~~~~--df~rpiksial~P--d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~ 171 (846)
T KOG2066|consen 100 LFTDDEITQY--DFKRPIKSIALHP--DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---N 171 (846)
T ss_pred ccCCccceeE--ecCCcceeEEecc--chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---c
Confidence 9888876665 4567899999999 5 57799999988 7776543222222223556678999999974 4
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
+++-++.+| |++||+.+++.+..+........ ...-...+.|.+. ..|+.|= ..+|+|..++.+
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~~--~~LVIGW-~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQDE--DRLVIGW-GDSVKICSIKKR 235 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecCC--CeEEEec-CCeEEEEEEecc
Confidence 677777665 99999999988776654432111 2223456788875 4666654 457999998843
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=9.2e-07 Score=76.03 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=75.6
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCCc-eEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
+++.+..+.+... ++.+|...|..++|+| ..+ ++..++.+..|+|.|+.+...+.. +..+ ..+++++|.-+..
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp--~~~GLl~~asl~nkiki~dlet~~~vss--y~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSP--FNEGLLGLASLGNKIKIMDLETSCVVSS--YIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCc--cccceeeeeccCceEEEEecccceeeeh--eecc-CCceeeeeccCCc
Confidence 4444444444333 5567888999999999 444 788899999999999998776655 5555 7899999999988
Q ss_pred cEEEEEcCCCcEEEEeCCCCCcc
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAAT 186 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~ 186 (492)
+++++|-..|.|.+||++..+..
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred ceeEEeccCceEEEEEccCCCch
Confidence 99999999999999999976543
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.78 E-value=3.1e-06 Score=72.80 Aligned_cols=233 Identities=17% Similarity=0.133 Sum_probs=132.1
Q ss_pred CCeEEEEECCCCceeeeeccCc-CcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 82 DRRVILWDWKTERVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
+|+|..||..+|+.+.+...+. .....+... + ++..+++++.++.|..||..+++......+....... . ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P--DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--P-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E--ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--E-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E--eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--e-eec
Confidence 6899999999999888773211 112221122 2 5667777788999999999999877665443221111 1 222
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCcccee-ecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
++ .+++++.++.++.+|..+++.+... .... .... ........+. +..++.+..++.|..+|+++++..
T Consensus 76 ~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~----~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 76 GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAG----VRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCS----TB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEE
T ss_pred cc--ccccccceeeeEecccCCcceeeeeccccc-cccc----cccccCceEe---cCEEEEEeccCcEEEEecCCCcEE
Confidence 33 4566667889999999999988774 3221 1100 0011222332 457777777999999999998865
Q ss_pred CCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
.......+.... . . .....+..-....++..+++..++.+..+|+.++..
T Consensus 146 w~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~------------------------- 195 (238)
T PF13360_consen 146 WKYPVGEPRGSS---P-I-SSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK------------------------- 195 (238)
T ss_dssp EEEESSTT-SS------E-EEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE-------------------------
T ss_pred EEeecCCCCCCc---c-e-eeecccccceEEECCEEEEEcCCCeEEEEECCCCCE-------------------------
Confidence 443221110000 0 0 001112222233345444444466544448877521
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeE
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~ 379 (492)
. ....... +..+ . ..++..|+.++.++.|..||+.+|+.+-
T Consensus 196 -------------~--w~~~~~~--~~~~-~-~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 196 -------------L--WSKPISG--IYSL-P-SVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -------------E--EEECSS---ECEC-E-ECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -------------E--EEecCCC--ccCC-c-eeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 1 1111111 2221 1 4567788888799999999999998763
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.78 E-value=1.6e-05 Score=68.56 Aligned_cols=214 Identities=18% Similarity=0.222 Sum_probs=132.0
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEc-CCCCEEEEecCCCeEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN-TDGDILISGSDDRRVIL 87 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~d~~i~i 87 (492)
++.++++....+.|..|+..+++.. .+.. .+ ...+++. +++.++++ ...+ +.+
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~----------------------~~~~-~~-~~G~~~~~~~g~l~v~-~~~~-~~~ 64 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE----------------------VIDL-PG-PNGMAFDRPDGRLYVA-DSGG-IAV 64 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE----------------------EEES-SS-EEEEEEECTTSEEEEE-ETTC-EEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE----------------------EEec-CC-CceEEEEccCCEEEEE-EcCc-eEE
Confidence 7788888888899999999876543 1111 11 5677777 67655555 4444 566
Q ss_pred EECCCCceeeeecc---C-cCcceEEEEecCCCCCceEEeecCC--------CcEEEEecccCCeeeeEEeecCCCceEE
Q 011160 88 WDWKTERVKLSFHS---G-HNDNVFQAKIMPFTDDRSIVTCAAD--------GQVRHAQILERGGVETKLLGKHQGRAHK 155 (492)
Q Consensus 88 wd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~l~~~~~d--------g~v~iw~~~~~~~~~~~~~~~~~~~v~~ 155 (492)
+|..+++....... . .....+.+++.| +|++.++.... |.|..++.. ..+.. +...-...+.
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~--~~~~~~~pNG 138 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTV--VADGLGFPNG 138 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEE--EEEEESSEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEE--EecCcccccc
Confidence 69888865333311 1 345788999999 99977765533 445555554 22222 2223456789
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-c---ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-T---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 156 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
|+|+|++..++++-+..+.|..+++..... + ..+..... .....-.+++.++ +++.++....+.|.++
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~g~pDG~~vD~~-G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-------GPGYPDGLAVDSD-GNLWVADWGGGRIVVF 210 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-------SSCEEEEEEEBTT-S-EEEEEETTTEEEEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-------CCcCCCcceEcCC-CCEEEEEcCCCEEEEE
Confidence 999999965666778889999999874432 1 11111100 1123678999997 6777777788999999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc-CCCCeeEe
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVS 278 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~ 278 (492)
+.. +++.....+ ....+++++|. ++.+.|+.
T Consensus 211 ~p~-G~~~~~i~~---------------p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 211 DPD-GKLLREIEL---------------PVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp ETT-SCEEEEEE----------------SSSSEEEEEEESTTSSEEEE
T ss_pred CCC-ccEEEEEcC---------------CCCCEEEEEEECCCCCEEEE
Confidence 987 554332211 12368899994 56554443
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=6.2e-07 Score=84.40 Aligned_cols=186 Identities=12% Similarity=0.101 Sum_probs=118.6
Q ss_pred CCCCCCceEeecc----CcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 5 SNNNNNKRARTSV----DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 5 ~~~~~~~~l~t~~----~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
++.|..+++|+++ +.|+|.||- ++|+.-.. -+. .-.+++++|+|..-.|+.|-
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-------------------Vt~---P~hatSLCWHpe~~vLa~gw 78 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-------------------VTY---PVHATSLCWHPEEFVLAQGW 78 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-------------------ccc---ceehhhhccChHHHHHhhcc
Confidence 5678889988875 558899984 44653210 111 12356799999998999999
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC--Cce--EEE
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ--GRA--HKL 156 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~--~~v--~~i 156 (492)
.-|.+.+|...+.+. .+....|..+|..+.||| +|..++++..-|.|.+|.......+....+..|. ..+ .|.
T Consensus 79 e~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cf 155 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCF 155 (1416)
T ss_pred ccceeEEEecCCcee-eeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEE
Confidence 999999999776554 566578999999999999 9999999999999999998754444433333343 223 344
Q ss_pred EEcCCCCc-----EEEEEcCCCcEE-EEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEE
Q 011160 157 AIEPGSPH-----VFYTCGEDGLVQ-HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (492)
Q Consensus 157 ~~~~~~~~-----~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i 230 (492)
.+++++.. -.++.+.+..+- .++.+........ .. .-.|+ +..|+.++.+|+|+.
T Consensus 156 RL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-----------------~k-sgv~~-g~~F~~~~~~GtVyy 216 (1416)
T KOG3617|consen 156 RLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-----------------EK-SGVPK-GTEFLFAGKSGTVYY 216 (1416)
T ss_pred ecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-----------------cc-cCCCC-CcEEEEEcCCceEEE
Confidence 45555321 122333333222 2222211110000 00 11355 678888889999988
Q ss_pred Eeccc
Q 011160 231 YDIRK 235 (492)
Q Consensus 231 ~d~~~ 235 (492)
.|-..
T Consensus 217 vdq~g 221 (1416)
T KOG3617|consen 217 VDQNG 221 (1416)
T ss_pred EcCCC
Confidence 88543
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=2.6e-07 Score=87.51 Aligned_cols=184 Identities=13% Similarity=0.140 Sum_probs=134.0
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
++..++.|+-...+..+|+.+++.. +...-..+.|+-++. +++++.+|...|+|.+-
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---------------------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET---------------------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLR 202 (1118)
T ss_pred CCcceeecchhhheeeeecccceee---------------------eeeeccCCceEEEEe--cCcEEEeecccceEEee
Confidence 3445666666666777777765544 223222334666665 47899999999999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC---------CCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
|..+.+.+.++ ..|++.|..+.. .|+.|++++. |..|+|||++..+.+.. +.-+.++ .-+.|+
T Consensus 203 D~~s~~~iht~-~aHs~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~P-~flrf~ 274 (1118)
T KOG1275|consen 203 DPNSFETIHTF-DAHSGSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYGP-QFLRFH 274 (1118)
T ss_pred cCCcCceeeee-eccccceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccCc-hhhhhc
Confidence 99999999999 899999988777 6889998875 45689999988766544 3333333 557889
Q ss_pred CCCCcEEEEEcCCCcEEEEeC---CCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEec
Q 011160 160 PGSPHVFYTCGEDGLVQHFDL---RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~ 233 (492)
|.-...+++++..|...+-|. .+.. ...+...+ ....+..+.+++. +..++.|..+|.|.+|.-
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p--------~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNP--------NGSGISAFDISSN-GDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCc-cceeEEcc--------CCCcceeEEecCC-CceEEEecccCcEeeecC
Confidence 987778899999999999983 3331 11221211 3335899999997 789999999999999973
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=3.6e-06 Score=72.45 Aligned_cols=228 Identities=16% Similarity=0.111 Sum_probs=129.5
Q ss_pred cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 011160 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL 97 (492)
Q Consensus 19 dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 97 (492)
+|+|..||..+|+.+-+ ..+. ...+.+ +.. .+++..+++++.++.|..||..+|+.+.
T Consensus 2 ~g~l~~~d~~tG~~~W~-------------------~~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W 60 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-------------------YDLGPGIGGPV-ATA-VPDGGRVYVASGDGNLYALDAKTGKVLW 60 (238)
T ss_dssp TSEEEEEETTTTEEEEE-------------------EECSSSCSSEE-ETE-EEETTEEEEEETTSEEEEEETTTSEEEE
T ss_pred CCEEEEEECCCCCEEEE-------------------EECCCCCCCcc-ceE-EEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 68999999998988732 1121 122222 112 2346677777889999999999999887
Q ss_pred eeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec-CC-CceEEEEEcCCCCcEEEEEcCCCcE
Q 011160 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-HQ-GRAHKLAIEPGSPHVFYTCGEDGLV 175 (492)
Q Consensus 98 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~-~~v~~i~~~~~~~~~l~~~~~dg~i 175 (492)
++.. ...+...... .+..++.++.++.|+.+|..+++......... .. ...........+ ..++++..++.|
T Consensus 61 ~~~~--~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l 134 (238)
T PF13360_consen 61 RFDL--PGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKL 134 (238)
T ss_dssp EEEC--SSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEE
T ss_pred Eeec--cccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcE
Confidence 7732 2221111111 45566666678899999998888766521211 11 111122222224 467778879999
Q ss_pred EEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCC
Q 011160 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (492)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (492)
..+|+++|+.+...................+..-....+ + .++.++.++.+..+|+.+++.....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~~g~~~~~d~~tg~~~w~~------------- 199 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD-G-RVYVSSGDGRVVAVDLATGEKLWSK------------- 199 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT-T-EEEEECCTSSEEEEETTTTEEEEEE-------------
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC-C-EEEEEcCCCeEEEEECCCCCEEEEe-------------
Confidence 999999999887776532111100000111222222223 4 6666666675444499887632110
Q ss_pred cCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
....+..+ ....+..|+.++ ++.+..||+.+++
T Consensus 200 ----~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 200 ----PISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ----CSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ----cCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 00112221 345666666665 7899999999864
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.72 E-value=3e-05 Score=73.85 Aligned_cols=213 Identities=14% Similarity=0.109 Sum_probs=112.8
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEE--EEEEcCCCCEEEEecCCCeEEEE
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN--TVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
.++.+++.++.|.-.|..+|+++-+..... ....+...+. .++.. ++..++.++.++.|.-+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~---------------~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~Al 125 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKL---------------PADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVAL 125 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCC---------------CccccccccccCCcEEc-cCCeEEEecCCCeEEEE
Confidence 445666778888888988888773210000 0000000000 11111 22577788889999999
Q ss_pred ECCCCceeeeeccCcCc-ceEEEEecCCCCCceEEeec---------CCCcEEEEecccCCeeeeEEeecCC--------
Q 011160 89 DWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCA---------ADGQVRHAQILERGGVETKLLGKHQ-------- 150 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~-------- 150 (492)
|.++|+.+.++...... .-..+.-+|.-.+..++.++ .+|.|.-+|..+++..-........
T Consensus 126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred ECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCC
Confidence 99999988776322110 00111112211234454443 3678888898888776553332110
Q ss_pred ----------Cce-EEEEEcCCCCcEEEEEcCCC------------------cEEEEeCCCCCccceeecCCCCCC--Cc
Q 011160 151 ----------GRA-HKLAIEPGSPHVFYTCGEDG------------------LVQHFDLRTGAATELFTCRPIDDR--RN 199 (492)
Q Consensus 151 ----------~~v-~~i~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~--~~ 199 (492)
..+ ...++.+.+ .+++.++.++ .|.-+|.++++....++....... ..
T Consensus 206 ~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 206 PDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccccc
Confidence 001 123444444 3566676554 799999999998877653221100 00
Q ss_pred ceeecceEEEE-EcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 200 YMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 200 ~~~~~~v~~~~-~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
. ....+..+. ..-.....++.++.+|.+..+|.++++..-.
T Consensus 285 ~-s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 285 P-NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred C-CCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 0 000111111 1110012678888999999999999886543
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.7e-06 Score=74.38 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=71.7
Q ss_pred eeeEeecCccceEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
+..+.+.+|...|..++|||..+ +|..++.+..|+|.|+++...+..+ ..+ ..+++++|.-. +..+|+.|..+|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDld-e~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLD-ERHVIYAGLQNGMV 260 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccC-CcceeEEeccCceE
Confidence 33456778889999999999876 7888999999999999998887777 455 78999999872 45678888899999
Q ss_pred EEEecccCCe
Q 011160 131 RHAQILERGG 140 (492)
Q Consensus 131 ~iw~~~~~~~ 140 (492)
.+||++..+.
T Consensus 261 lvyD~R~~~~ 270 (463)
T KOG1645|consen 261 LVYDMRQPEG 270 (463)
T ss_pred EEEEccCCCc
Confidence 9999987654
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=5.7e-07 Score=85.31 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=104.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
+..++.|+....+..+|+.+.+..... .-..+.|.-|+. +++.+.+|...|+|.+-|..+.+.+.. +..|++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht--~~aHs~s 219 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHT--FDAHSGS 219 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeee-eccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeee--eeccccc
Confidence 455677777777888898887765554 333334777776 678999999999999999988777765 8999999
Q ss_pred eEEEEEcCCCCcEEEEEcC---------CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 153 AHKLAIEPGSPHVFYTCGE---------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
|.++... | ++|++||. |.-|++||++..+.+..+..+. ...-+.|+|.-...+++++
T Consensus 220 iSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-----------~P~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 220 ISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-----------GPQFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCccccc-----------CchhhhhcccccceEEEEe
Confidence 9887664 5 57788764 5568999999888776665432 1244677776566788888
Q ss_pred CCCeEEEEecc
Q 011160 224 SDEYTRLYDIR 234 (492)
Q Consensus 224 ~dg~v~i~d~~ 234 (492)
..|...+.|..
T Consensus 286 ~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 286 QSGQFQFVDTA 296 (1118)
T ss_pred cccceeecccc
Confidence 88888887743
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=2.4e-05 Score=77.22 Aligned_cols=245 Identities=13% Similarity=0.106 Sum_probs=139.8
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
.+.|.++.|..+...++.+...|.|.+-|.++...... ..-...|.+++|+| |+..++..+..+++.+-. .+-..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~--Dee~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSP--DEELLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecC--CCcEEEEEeCCcEEEEEe-ccccc
Confidence 36899999999999899999999999998877654221 33566899999999 999999888877765543 22222
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
+..+.+. ..-.+.+ -++.++....=.-+.-..++....-................=+.++|--| |.+++
T Consensus 143 i~E~~L~--------~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fA 211 (1265)
T KOG1920|consen 143 IAEKPLD--------ADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFA 211 (1265)
T ss_pred hhccccc--------ccccccc--ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEE
Confidence 2222121 1111222 12333332211111111111100000000000000001112356889887 67887
Q ss_pred E-----ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec----CCcEEEEecCC
Q 011160 221 V-----AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDM 291 (492)
Q Consensus 221 ~-----~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~~~i~~~d~~~ 291 (492)
+ ....+.|++||.. +.+.. ......+.-.+++|-|.|.++++.. ++.|.+|.-+.
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns---------------~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNS---------------TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhc---------------ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 7 3333899999987 43221 1112234456899999999998754 44699998765
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE---eeccCeEE
Q 011160 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS---GSDCGRIF 368 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s---g~~dg~i~ 368 (492)
-... .....+..... .|..++| ..++..||+ ......|+
T Consensus 276 L~hg-----------------------------------~f~l~~p~de~--~ve~L~W-ns~sdiLAv~~~~~e~~~v~ 317 (1265)
T KOG1920|consen 276 LRHG-----------------------------------EFVLPFPLDEK--EVEELAW-NSNSDILAVVTSNLENSLVQ 317 (1265)
T ss_pred cccc-----------------------------------ccccCCccccc--chheeee-cCCCCceeeeecccccceEE
Confidence 3211 11111111111 2788998 999999987 55566699
Q ss_pred EEecCCC
Q 011160 369 IWKKKGG 375 (492)
Q Consensus 369 iwd~~~~ 375 (492)
+|-+.+.
T Consensus 318 lwt~~Ny 324 (1265)
T KOG1920|consen 318 LWTTGNY 324 (1265)
T ss_pred EEEecCe
Confidence 9988664
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=8e-07 Score=83.23 Aligned_cols=191 Identities=13% Similarity=0.154 Sum_probs=130.0
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
...++|++++ +++|+-|+.+|.|++.+.. +.. .+. ..|... .. +|.++++|+.||.|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~-~~~s~~------~~--~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTN-FDHSSS------IL--EGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccc-cccccc------cc--CCceEEEecCCCcEEEeeccCCcc
Confidence 4567788886 7899999999999999976 443 222 245443 33 899999999999999999888776
Q ss_pred eeeEEeecCCCceEEEEEcCC----CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 141 VETKLLGKHQGRAHKLAIEPG----SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
.... ....++.+|+++|+ ..+.+++|+..| +.++.-+--...... ..+...++|.++.|. +
T Consensus 106 ~~~~---df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--------~l~~~eG~I~~i~W~---g 170 (846)
T KOG2066|consen 106 ITQY---DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--------VLSEGEGPIHSIKWR---G 170 (846)
T ss_pred ceeE---ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--------eeecCccceEEEEec---C
Confidence 5542 24478999999998 225689999988 777643211111111 122256789999997 5
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
+++|-++.+| |++||+.+.+.+....... ...........+.|.++.+ |+.|=.++|++..++
T Consensus 171 ~lIAWand~G-v~vyd~~~~~~l~~i~~p~---------~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQRLTNIPPPS---------QSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred cEEEEecCCC-cEEEeccccceeeccCCCC---------CCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 7999888776 9999999987665543321 0111122334577877654 455556678888777
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.2e-06 Score=77.33 Aligned_cols=220 Identities=14% Similarity=0.131 Sum_probs=132.6
Q ss_pred EecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc-eEEEEEcCCCCcEEEEEcCCC-----cEEEEeCCCCC
Q 011160 111 KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR-AHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGA 184 (492)
Q Consensus 111 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 184 (492)
+|++ .+..++.|+.+|.|.+.+-. - .....+..+... |..+ +.-++..+|++.+.|+ .+++|+++...
T Consensus 30 c~~s--~~~~vvigt~~G~V~~Ln~s--~-~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSS--STGSVVIGTADGRVVILNSS--F-QLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcC--CCceEEEeeccccEEEeccc--c-eeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 3566 78889999999988777632 1 221235566655 4444 4444445777777664 48999987542
Q ss_pred cc---ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcc
Q 011160 185 AT---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (492)
Q Consensus 185 ~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
.. ..+..+............++.+++.+.+ -+.+++|-.+|.|..+.-.-.+-.+. .........
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgs-----------r~~~~~~~~ 171 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGS-----------RQDYSHRGK 171 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcccc-----------ceeeeccCC
Confidence 21 1111111111111113557888999987 68999999999999885322110000 111222346
Q ss_pred cceEEEEEcCCCCe-eEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccc
Q 011160 262 VGITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (492)
Q Consensus 262 ~~i~~~~~s~~~~~-l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (492)
.+|+++++..+++. +.+++...|.+|.+... ......+..|.
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr-------------------------------------~p~~~~ld~~G 214 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGR-------------------------------------TPSLKVLDNNG 214 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCC-------------------------------------CcceeeeccCC
Confidence 78999999999876 66677888999998742 11223344444
Q ss_pred cceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe-cCCceeE
Q 011160 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVN 389 (492)
Q Consensus 341 ~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~ 389 (492)
.. +.|..+ ++....+++++ +..|.+|+.....+...+. +|.....
T Consensus 215 ~~--lnCss~-~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 215 IS--LNCSSF-SDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred cc--ceeeec-CCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 43 677777 55444244443 4569999987766666776 6664433
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.65 E-value=0.00014 Score=59.44 Aligned_cols=146 Identities=18% Similarity=0.095 Sum_probs=93.7
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
..++++.|+-.+.+.--|..+|.+... ..+ ..+|-+-+.- -|++++.|...|.+.+-
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We-------------------~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWE-------------------AIL---GVRIECSAIV-VGDFVVLGCYSGGLYFL 78 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEee-------------------hhh---CceeeeeeEE-ECCEEEEEEccCcEEEE
Confidence 356788888889999999998887632 111 2233332222 47789999999999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 168 (492)
+.++|.....+....+-.+. ....+ ++..+..++.|++.+..|..+..++......+ ....+-++.|.. .-|+.
T Consensus 79 ~~~tGs~~w~f~~~~~vk~~-a~~d~--~~glIycgshd~~~yalD~~~~~cVykskcgG--~~f~sP~i~~g~-~sly~ 152 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETVKVR-AQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG--GTFVSPVIAPGD-GSLYA 152 (354)
T ss_pred Eecchhheeeeeehhhhccc-eEEcC--CCceEEEecCCCcEEEecccccceEEecccCC--ceeccceecCCC-ceEEE
Confidence 99999877776322222222 23344 88999999999999999999988876632222 222233444522 23555
Q ss_pred EcCCCcEEEEeCCCC
Q 011160 169 CGEDGLVQHFDLRTG 183 (492)
Q Consensus 169 ~~~dg~i~iwd~~~~ 183 (492)
+...|.+.--..++.
T Consensus 153 a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 153 AITAGAVLAVTKNPY 167 (354)
T ss_pred EeccceEEEEccCCC
Confidence 556666655554444
No 324
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.64 E-value=3.4e-05 Score=64.98 Aligned_cols=221 Identities=14% Similarity=0.199 Sum_probs=119.3
Q ss_pred eEeecCccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEE
Q 011160 54 YAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 132 (492)
.+.+.+-...+..|+|+|+. .++++....+.|...+. +|+.+..+.-.-.+..-.+++.. ++.++++--.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG--NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence 35566666779999999975 46677777888888886 47777776333345678899987 7777777767899999
Q ss_pred EecccCCe-e-----eeEEee---cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC---CCccceeecCCCCCCCcc
Q 011160 133 AQILERGG-V-----ETKLLG---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNY 200 (492)
Q Consensus 133 w~~~~~~~-~-----~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~ 200 (492)
+++..... + ....+. .+...+-.++|.|.+. .|+.+-......+|.++. .............. ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 167 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD--DK 167 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---HT
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeecccccccc--cc
Confidence 98843221 1 111111 2445689999999885 455566666666776654 21111111000000 00
Q ss_pred eeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec
Q 011160 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
.....+.+++++|..+++++.......|..+| .+++......+.... .-....-...-.|+|.++|++.++.-
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~------~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF------HGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG------GG-SS---SEEEEEE-TT--EEEEET
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc------cCcccccCCccEEEECCCCCEEEEcC
Confidence 02335789999999888888888999999999 455443332221100 00001124578899999998777776
Q ss_pred CCcEEEE
Q 011160 281 DEFIYLF 287 (492)
Q Consensus 281 ~~~i~~~ 287 (492)
-+-.++|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555554
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.63 E-value=5.7e-08 Score=88.31 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=133.4
Q ss_pred cceEEEEEEcCC--CCEEEEecCCCeEEEEECCCCcee-eeeccCcCcceEEEEecCCCCCceEEeec----CCCcEEEE
Q 011160 61 RGCVNTVSFNTD--GDILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCA----ADGQVRHA 133 (492)
Q Consensus 61 ~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~dg~v~iw 133 (492)
...+.|+++.-+ ..+++.|..+|.|-+-.+....-- ..+..+|....++++|++. |.+.||+|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc-cHHHHHhhhhhhcccCCccce
Confidence 345778877653 458899999999999887654332 4455788899999999984 566777764 25679999
Q ss_pred ecccC--CeeeeEEeec-CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecceEEE
Q 011160 134 QILER--GGVETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 134 ~~~~~--~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
|+.+. .+.....+.+ ......+++|..+. +++++|.....+.++|++.... ...+ ....+..+
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~sv------------nTk~vqG~ 201 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSV------------NTKYVQGI 201 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhh------------hhhhcccc
Confidence 99876 2222222322 33456688888776 5788888888999999984322 2221 12245667
Q ss_pred EEcCCCCceEEEecCCCeEEEEe-cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeecC--CcEE
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYND--EFIY 285 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~--~~i~ 285 (492)
..+|-.++++++-. ||.|.+|| .++-+. +... ...........+..++|+|.. .++++.+. ++|+
T Consensus 202 tVdp~~~nY~cs~~-dg~iAiwD~~rnien--------pl~~--i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--------PLQI--ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred eecCCCCCceeccc-cCceeeccchhhhcc--------HHHH--HhhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 77885566777655 99999999 443221 1000 001111122368899999954 35666663 3699
Q ss_pred EEecCC
Q 011160 286 LFTQDM 291 (492)
Q Consensus 286 ~~d~~~ 291 (492)
+|++..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 998865
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.58 E-value=4.4e-05 Score=71.02 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=90.9
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 139 (492)
|...|.--+++..+++|+.|+.-|.+.+|+-..+.....-..+..+.+.....++ +..++|.|+..|.|.++.+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhccC
Confidence 4556666677778999999999999999997766654333233445566677887 78888889999999999887643
Q ss_pred eeee----EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC
Q 011160 140 GVET----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (492)
Q Consensus 140 ~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (492)
.... ..-..|...|++++|++++ ..+++|...|.|.+-.+..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 3211 1122478899999999999 5789999999999988877
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.57 E-value=9.5e-06 Score=70.10 Aligned_cols=278 Identities=10% Similarity=0.053 Sum_probs=155.6
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec----------CCCcEEEEecccCCeeeeEEeecC-C-
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQILERGGVETKLLGKH-Q- 150 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~-~- 150 (492)
+++.|+|.++++.+..+..+. .-.+..+| +++.+++++ ..-.|.+||..+-.......+..- .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 479999999998877774443 33466789 999888754 234689999988766554444431 1
Q ss_pred ---CceEEEEEcCCCCcEEEEE--cCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC
Q 011160 151 ---GRAHKLAIEPGSPHVFYTC--GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 151 ---~~v~~i~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
.....++++.+++ +++.. +--.+|.|.|+..++.+..+..+. |.-.-|.++.-|.+.|.|
T Consensus 92 ~~~~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--------------C~~iyP~~~~~F~~lC~D 156 (342)
T PF06433_consen 92 QVVPYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--------------CWLIYPSGNRGFSMLCGD 156 (342)
T ss_dssp -BS--GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEGTS--------------EEEEEEEETTEEEEEETT
T ss_pred eecccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecCCC--------------EEEEEecCCCceEEEecC
Confidence 1224567888885 44443 445678999999988877765421 122223334567888899
Q ss_pred CeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-CCeeEeecCCcEEEEecCCCCCCCCCCCCCC
Q 011160 226 EYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGPNPPPSSPV 303 (492)
Q Consensus 226 g~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 303 (492)
|.+....+.. ++..... ...+....+..+..-++... +.++.....|.|+-.++.........+
T Consensus 157 Gsl~~v~Ld~~Gk~~~~~----------t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~---- 222 (342)
T PF06433_consen 157 GSLLTVTLDADGKEAQKS----------TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP---- 222 (342)
T ss_dssp SCEEEEEETSTSSEEEEE----------EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE----
T ss_pred CceEEEEECCCCCEeEee----------ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc----
Confidence 9999888873 3321110 00011111112223334433 455556667888887776532100000
Q ss_pred CccccccccCCCCCCCCCCCCCCCccccCCceeeccccc--eeeeeEEeecCCCcEEEEeec---c-------CeEEEEe
Q 011160 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC--VTVKGVNFFGPKCEYVVSGSD---C-------GRIFIWK 371 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~s~~g~~l~sg~~---d-------g~i~iwd 371 (492)
......-...... .-..-+++ ++..+.|+..-. + ..|.++|
T Consensus 223 --------------------------~~~~t~~e~~~~WrPGG~Q~~A~-~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 223 --------------------------WSLLTDAEKADGWRPGGWQLIAY-HAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp --------------------------EESS-HHHHHTTEEE-SSS-EEE-ETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred --------------------------ccccCccccccCcCCcceeeeee-ccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 0000000000000 00223444 554444443221 1 1589999
Q ss_pred cCCCeeeEEEecCCceeEEEeecCCCC-eEEEe-eCCCCEEEeccCCCCCCcc
Q 011160 372 KKGGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRATL 422 (492)
Q Consensus 372 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~~~~ 422 (492)
+.+++.+.++.. ..++.+|+.+.+.+ +|++. ..++.|.+||..+++....
T Consensus 276 ~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 276 LKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp TTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 999999999874 34688999998776 66554 4578999999999877654
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.7e-05 Score=75.25 Aligned_cols=196 Identities=13% Similarity=0.200 Sum_probs=125.2
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcc-eEEEEecCCCCCceEEeecCCC-----cEEEEecccCC--
Q 011160 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-VFQAKIMPFTDDRSIVTCAADG-----QVRHAQILERG-- 139 (492)
Q Consensus 68 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg-----~v~iw~~~~~~-- 139 (492)
+|++.+..++.|+.+|.|.+.+- .......+ ..+... |..+.... ...+|++.+.|+ .|+||++..-.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCC
Confidence 45678889999999998888773 23333555 455555 44443332 346788776654 48999986431
Q ss_pred ----eeeeEEeec-----CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC--CCCccceeecCCCCCCCcceeecceEE
Q 011160 140 ----GVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 140 ----~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
+.....+.. ...++.+++++.+- +.+++|-.+|.|..+.-. ...-.... ..+....+|+.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~--------~~~~~~~pITg 176 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQD--------YSHRGKEPITG 176 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcccccee--------eeccCCCCcee
Confidence 221111222 35678899999986 688999999999988421 11111110 11225568999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEe
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (492)
+++..++...+.+ ..-..|.+|.+.... . .......+...+.|.++++....+++++...+.+|+
T Consensus 177 L~~~~d~~s~lFv-~Tt~~V~~y~l~gr~-p-------------~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 177 LALRSDGKSVLFV-ATTEQVMLYSLSGRT-P-------------SLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred eEEecCCceeEEE-EecceeEEEEecCCC-c-------------ceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 9998874442232 234578999887432 0 122344567788999998877768888888999999
Q ss_pred cCC
Q 011160 289 QDM 291 (492)
Q Consensus 289 ~~~ 291 (492)
.+.
T Consensus 242 sd~ 244 (933)
T KOG2114|consen 242 SDG 244 (933)
T ss_pred CCC
Confidence 875
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.54 E-value=5.8e-05 Score=70.28 Aligned_cols=153 Identities=10% Similarity=0.109 Sum_probs=106.7
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeE
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (492)
+..++++++.|++-|.|++|+..+|+... ....+-.+.+..+..+++..++|.|+..|.|
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~--------------------~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V 100 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRK--------------------LKNEGATGITCVRSVSSVEYLVAAGTASGRV 100 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhc--------------------ccccCccceEEEEEecchhHhhhhhcCCceE
Confidence 45678999999999999999999777652 2333456677788889999999999999999
Q ss_pred EEEECCCCcee-----eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe--eeeEEeecCCCceEEEEE
Q 011160 86 ILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 86 ~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~i~~ 158 (492)
.++.+..+... ......|...|++++|++ ++..+++|...|.|.+-.+.+... ...+.+......|-.+.+
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence 99988764331 112234788999999999 999999999999999888876211 111123334566767766
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCC
Q 011160 159 EPGSPHVFYTCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (492)
... .+|++... .-.+++.+.+.
T Consensus 179 ~q~--~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 179 LQS--YLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred ccc--eehHhhhh--hhheeecchhH
Confidence 542 34444333 23455555444
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.53 E-value=2.7e-05 Score=67.38 Aligned_cols=282 Identities=14% Similarity=0.102 Sum_probs=147.3
Q ss_pred ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC----------CCeEEEEE
Q 011160 20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----------DRRVILWD 89 (492)
Q Consensus 20 g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~i~iwd 89 (492)
+.|.|.|.++++++. .+. .+-.-.+..+|+++.+++++. .-.|.+||
T Consensus 17 ~rv~viD~d~~k~lG---------------------mi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D 73 (342)
T PF06433_consen 17 SRVYVIDADSGKLLG---------------------MID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWD 73 (342)
T ss_dssp EEEEEEETTTTEEEE---------------------EEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ceEEEEECCCCcEEE---------------------Eee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEe
Confidence 478899988877662 222 122234678999998887532 33689999
Q ss_pred CCCCceeeeeccCc--Cc----ceEEEEecCCCCCceEEeec--CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 90 WKTERVKLSFHSGH--ND----NVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 90 ~~~~~~~~~~~~~~--~~----~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
..+-.....+.-.. .. ....++++. ++++++... -...|.|.|+..++.+......+ |....|.
T Consensus 74 ~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~ 145 (342)
T PF06433_consen 74 TQTLSPTGEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPS 145 (342)
T ss_dssp TTTTEEEEEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEE
T ss_pred cCcCcccceEecCCcchheecccccceEEcc--CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEec
Confidence 99887766542221 11 223346666 777766543 23567777777665554422221 3333455
Q ss_pred CCcEEEEEcCCCcEEEEeCC-CCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 162 SPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
++.-|.+-|.||.+.-..+. .|+...... ...... ...-+..-++... +..++..+.+|.|+-.|+.......
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~----~dp~f~~~~~~~~-~~~~~F~Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPD----DDPLFEHPAYSRD-GGRLYFVSYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTT----TS-B-S--EEETT-TTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeec-cccCCC----CcccccccceECC-CCeEEEEecCCEEEEEeccCCcccc
Confidence 54568888899999998887 444432211 000000 0001122233333 3355556788999888887653211
Q ss_pred CCCCCCCccccCCC-CcCCCcccceEEEEEcCCCCeeEeec----CC-------cEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 241 STDFGQPADYFCPP-NLIGDEQVGITGLAFSDQSELLVSYN----DE-------FIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 241 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~----~~-------~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
.. +....... .-..-..+.-.-+++++....|.+.. .+ .|.+||+.++
T Consensus 220 ~~----~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------------- 279 (342)
T PF06433_consen 220 GK----PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------------- 279 (342)
T ss_dssp EE----EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----------------
T ss_pred cC----cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----------------
Confidence 00 00000000 00000123344567776554444321 11 2666676663
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEe-eccCeEEEEecCCCeeeEEEecC
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSG-SDCGRIFIWKKKGGELIRVIEAD 384 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg-~~dg~i~iwd~~~~~~~~~~~~h 384 (492)
+.+..+.... .+.+|.. +.+.+ +|++. ..++.|.+||..+|++++.+..-
T Consensus 280 ----------------------krv~Ri~l~~---~~~Si~V-sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 280 ----------------------KRVARIPLEH---PIDSIAV-SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp ----------------------EEEEEEEEEE---EESEEEE-ESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred ----------------------eEEEEEeCCC---ccceEEE-ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 3444444221 2667777 77766 55544 45799999999999999988743
No 331
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.53 E-value=1.2e-07 Score=86.33 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=128.3
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC-CCCEEEEec---
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS--- 80 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~--- 80 (492)
+|..+...+++|..+|.|-+-......-- -.....+|....++++|++ |.++||.|-
T Consensus 65 ~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 65 FYGNDRCILAVGSATGNISLLSVRHPHDS-------------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred hcCCchhhhhhccccCceEEeecCCcccc-------------------cceecccccccccccccccccHHHHHhhhhhh
Confidence 45566677899999998888766521110 0123456788999999998 567777763
Q ss_pred -CCCeEEEEECCCCc--e--eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEE
Q 011160 81 -DDRRVILWDWKTER--V--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (492)
Q Consensus 81 -~d~~i~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~ 155 (492)
.|..+.|||+.++- + ...+..+......+++|.. +.+++.+|.....+.++|++...... ..-.+..+..
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr--d~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vqG 200 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR--DTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQG 200 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCcccccccc--Ccchhhcccccchhhhhhhhhhhhhh---hhhhhhhccc
Confidence 35679999998762 1 1222222334566888886 88889999999999999997432111 1112345667
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEe-CCCCCc-cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-CCCeEEEEe
Q 011160 156 LAIEPGSPHVFYTCGEDGLVQHFD-LRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYD 232 (492)
Q Consensus 156 i~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~i~d 232 (492)
+.+.|-.+.++ +...||.|.+|| .+.-+. +..+. +.... ....+..++|+|.....+++.. ..++|++||
T Consensus 201 ~tVdp~~~nY~-cs~~dg~iAiwD~~rnienpl~~i~-~~~N~-----~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 201 ITVDPFSPNYF-CSNSDGDIAIWDTYRNIENPLQIIL-RNENK-----KPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ceecCCCCCce-eccccCceeeccchhhhccHHHHHh-hCCCC-----cccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 78888444564 455599999999 333322 22221 11111 1225889999998555666655 457899999
Q ss_pred cccc
Q 011160 233 IRKY 236 (492)
Q Consensus 233 ~~~~ 236 (492)
+..-
T Consensus 274 i~~v 277 (783)
T KOG1008|consen 274 ICVV 277 (783)
T ss_pred cccc
Confidence 8753
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.47 E-value=4.1e-05 Score=69.69 Aligned_cols=253 Identities=13% Similarity=0.094 Sum_probs=134.7
Q ss_pred ceEEEEecCCCCCceEEeecCCCcEEEEecccCCee-----------------------------------------eeE
Q 011160 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-----------------------------------------ETK 144 (492)
Q Consensus 106 ~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-----------------------------------------~~~ 144 (492)
.|+.+.|++ +..-|+++...|.|.||.+...+.. ...
T Consensus 3 ~v~~vs~a~--~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSFAP--ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEEET--TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEecC--CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 478888888 7788888888899988877533111 111
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc-----CCC--Cc
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-----PRN--AN 217 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~--~~ 217 (492)
.+....++|++++.+.-| +++.|..+|.+.|.|+|....+..-..... .........++++.|. .|+ .-
T Consensus 81 l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~--~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES--FLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred heeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc--ccccccccCeeEEEEEEEecCCCcccce
Confidence 122346889999998766 789999999999999998887766443330 0111134456777775 221 24
Q ss_pred eEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEE-EcCC---------------------CC
Q 011160 218 LFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA-FSDQ---------------------SE 274 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~---------------------~~ 274 (492)
.+++|+..|.+.+|.+-- ..-.....+ ......+...|..+. ++.+ ..
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~---------~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQF---------AGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEE---------EEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEE---------eeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 688899999999998742 110000000 000011223333333 2211 12
Q ss_pred eeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee---
Q 011160 275 LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF--- 351 (492)
Q Consensus 275 ~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 351 (492)
+++++++..++++...+.+ ...+.+. ....+..+++.
T Consensus 228 ~vVvvSe~~irv~~~~~~k-------------------------------------~~~K~~~---~~~~~~~~~vv~~~ 267 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSK-------------------------------------GAHKSFD---DPFLCSSASVVPTI 267 (395)
T ss_dssp EEEEE-SSEEEEE-TT----------------------------------------EEEEE-S---S-EEEEEEEEEEEE
T ss_pred EEEEEcccceEEEeCCCCc-------------------------------------ccceeec---cccccceEEEEeec
Confidence 6677777788888776531 1112221 11112233331
Q ss_pred -cCCCcEEEEeeccCeEEEEecCCCeeeEEEecCC----ceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 352 -GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR----HVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 352 -s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
...+..|++-..+|.|++|.+..-+.+..+.-+. ..+...+++++|..++-.+. ..+.++.+
T Consensus 268 ~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 268 SRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp -EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred ccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 2356678888899999999999999888776543 34667788999997766643 34444433
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.46 E-value=4.2e-05 Score=71.80 Aligned_cols=324 Identities=8% Similarity=-0.004 Sum_probs=160.4
Q ss_pred EeeccCcceEEEEeeccCcchhh--hhhhcccccccce-eeeeee------EeecCccceEEE--EEE---cCCCCEEEE
Q 011160 13 ARTSVDKALVDVWLRELGQLSTR--NFALRRRASEDLV-LRLGIY------AKLDKHRGCVNT--VSF---NTDGDILIS 78 (492)
Q Consensus 13 l~t~~~dg~v~~w~~~~g~~~~~--~~~~~~~~~~~~~-~~~~~~------~~~~~h~~~v~~--~~~---s~~~~~l~s 78 (492)
+.+|+-.|.|+|+-+-+++.+.. .|.+-...+.... .+.+.+ ..+. .+.... +.+ ..||++|..
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~--~gD~HHp~~s~t~g~ydGr~~fi 146 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYL--NGDTHHPHMSFTDGTYDGRYLFI 146 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCccc--CCCcCCCcccccCCccceeEEEE
Confidence 78899999999999988877643 1211111100000 000000 0000 011111 222 136888887
Q ss_pred ecC-CCeEEEEECCCCceeeeeccCcCcceEEEEec--C--------------C-CCCceEEe-ecCCCcEEEEecccCC
Q 011160 79 GSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIM--P--------------F-TDDRSIVT-CAADGQVRHAQILERG 139 (492)
Q Consensus 79 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~--------------~-~~~~~l~~-~~~dg~v~iw~~~~~~ 139 (492)
-.. +.+|-.-++...++...+.......+..++|- | . .+|+.+.. .-..+.+.+.|..+.+
T Consensus 147 ndk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 147 NDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred ecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 764 45566666665444322222223333333332 2 0 04443322 2223556666666544
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
........ .....+.++|++. ++++.+.+ .++...+.........+... .+ -++.++
T Consensus 227 V~~qV~Vd---gnpd~v~~spdGk-~afvTsyNsE~G~tl~em~a~e~d~~vvfni~------------~i--ea~vkd- 287 (635)
T PRK02888 227 VAWQVMVD---GNLDNVDTDYDGK-YAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA------------RI--EEAVKA- 287 (635)
T ss_pred EEEEEEeC---CCcccceECCCCC-EEEEeccCcccCcceeeeccccCceEEEEchH------------HH--HHhhhC-
Confidence 43332222 2345678888885 44544421 22333332222211111100 00 022344
Q ss_pred CceEEEecCCCeEEEEeccc-----ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEe
Q 011160 216 ANLFAVAGSDEYTRLYDIRK-----YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFT 288 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d 288 (492)
+++... .++.|.+.|.++ .+....+ . -......+.++|||+++++++ ++++.++|
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yI--------------P--VGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYV--------------P--VPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEE--------------E--CCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 445444 357899999887 2211111 0 134567899999999998887 56899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
+.+.+....-...+. ........--.. -...+| +++|....+-.-|..|.
T Consensus 350 v~k~k~~~~~~~~~~--------------------------~~vvaevevGlG---PLHTaF-Dg~G~aytslf~dsqv~ 399 (635)
T PRK02888 350 VRKLDDLFDGKIKPR--------------------------DAVVAEPELGLG---PLHTAF-DGRGNAYTTLFLDSQIV 399 (635)
T ss_pred ChhhhhhhhccCCcc--------------------------ceEEEeeccCCC---cceEEE-CCCCCEEEeEeecceeE
Confidence 987432110000000 001111111111 234566 99998888888999999
Q ss_pred EEecCC----------CeeeEEEecCCcee-----EEEeecCCCCeEEEeeC
Q 011160 369 IWKKKG----------GELIRVIEADRHVV-----NCIEPHPHSTVLASSGI 405 (492)
Q Consensus 369 iwd~~~----------~~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~~~ 405 (492)
.|++.. ...+..+..|-++- ..=.-.|||++|++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 999875 23445555444321 11223688999988754
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.43 E-value=3.9e-05 Score=69.82 Aligned_cols=265 Identities=13% Similarity=0.102 Sum_probs=139.3
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchh-h----h----hhh-------------cccccccceeeeeeeEeecCc
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLST-R----N----FAL-------------RRRASEDLVLRLGIYAKLDKH 60 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~-~----~----~~~-------------~~~~~~~~~~~~~~~~~~~~h 60 (492)
.+++.++..-|++|...|.|-||.+...+.-. . . +.+ ..........-|.+..-++..
T Consensus 6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~ 85 (395)
T PF08596_consen 6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK 85 (395)
T ss_dssp EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence 46777888889999999999999987654442 0 0 000 111112222335666666777
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-c------CcCcceEEEEecCC---CCC---ceEEeecCC
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-S------GHNDNVFQAKIMPF---TDD---RSIVTCAAD 127 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~------~~~~~v~~~~~~~~---~~~---~~l~~~~~d 127 (492)
.++|++++.| |-.++|.|..+|.+.|.|++....+..-. . .....++++.|... .|+ -.|++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 9999999998 45599999999999999998776655421 1 13346788888631 122 467888899
Q ss_pred CcEEEEeccc-CCe--e-ee-EEeecCCCceEEEE-EcCC-C-------------------CcEEEEEcCCCcEEEEeCC
Q 011160 128 GQVRHAQILE-RGG--V-ET-KLLGKHQGRAHKLA-IEPG-S-------------------PHVFYTCGEDGLVQHFDLR 181 (492)
Q Consensus 128 g~v~iw~~~~-~~~--~-~~-~~~~~~~~~v~~i~-~~~~-~-------------------~~~l~~~~~dg~i~iwd~~ 181 (492)
|.+.+|.+.- ... . .. .....+.++|..|. +..+ | +.+++ ...+..++++.+.
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV-vvSe~~irv~~~~ 243 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV-VVSESDIRVFKPP 243 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE-EE-SSEEEEE-TT
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE-EEcccceEEEeCC
Confidence 9999998862 211 1 11 11123556665554 3221 1 12333 3445789999988
Q ss_pred CCCccceeecCCCCCCCcceeecceEEEEEc----CCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcC
Q 011160 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAID----PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (492)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (492)
+.+....... .......+.+- ..++..|++-..+|.+++|.+...+.+....+. .
T Consensus 244 ~~k~~~K~~~----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~-----------~ 302 (395)
T PF08596_consen 244 KSKGAHKSFD----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP-----------P 302 (395)
T ss_dssp ---EEEEE-S----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S-----------S
T ss_pred CCcccceeec----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC-----------C
Confidence 7766544321 11112223331 112567888899999999999887655443221 1
Q ss_pred CCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 258 ~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
......+....++++|..++-.+...+.++.+-
T Consensus 303 ~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 303 PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp ---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred ccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 112233455677999998887776665555543
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.42 E-value=0.00014 Score=66.42 Aligned_cols=305 Identities=13% Similarity=0.090 Sum_probs=152.3
Q ss_pred CCCCceEeec---------cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEE
Q 011160 7 NNNNKRARTS---------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (492)
Q Consensus 7 ~~~~~~l~t~---------~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 77 (492)
|||+++++.. +..+...|||+++++.. .+......+....|||+|+.||
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~----------------------~l~~~~~~~~~~~~sP~g~~~~ 58 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT----------------------PLTPPPPKLQDAKWSPDGKYIA 58 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE----------------------ESS-EETTBSEEEE-SSSTEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE----------------------ECcCCccccccceeecCCCeeE
Confidence 5788887772 23567889999887654 1222256788899999999999
Q ss_pred EecCCCeEEEEECCCCceeeeeccCc----------------CcceEEEEecCCCCCceEEeecCC-CcEEEEecccCCe
Q 011160 78 SGSDDRRVILWDWKTERVKLSFHSGH----------------NDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGG 140 (492)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~ 140 (492)
... ++.|.+++..++...+-...+- -+.-..+.||| ++++|+....| ..|..+.+.....
T Consensus 59 ~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 59 FVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp EEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred EEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEEEECCcCCceEEeeccCC
Confidence 886 4789999987775543322220 11235688999 99998876543 4444444321100
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCc-eE
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN-LF 219 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l 219 (492)
... ..-.+..+.+-.-|... . .-.+.++|+.+++....-..... ......+..+.|.++ +. ++
T Consensus 136 ~~~-----~yp~~~~~~YPk~G~~n-p----~v~l~v~~~~~~~~~~~~~~~~~-----~~~~~yl~~v~W~~d-~~~l~ 199 (353)
T PF00930_consen 136 PDS-----QYPEVESIRYPKAGDPN-P----RVSLFVVDLASGKTTELDPPNSL-----NPQDYYLTRVGWSPD-GKRLW 199 (353)
T ss_dssp STE-----SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHH-----HTSSEEEEEEEEEET-TEEEE
T ss_pred ccc-----cCCcccccccCCCCCcC-C----ceEEEEEECCCCcEEEeeecccc-----CCCccCcccceecCC-CcEEE
Confidence 000 00123344432222111 1 11467788888775421111000 002336889999998 45 33
Q ss_pred E-EecCCC---eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc-CCCCe-eEeec-CC--cEEEEecC
Q 011160 220 A-VAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSEL-LVSYN-DE--FIYLFTQD 290 (492)
Q Consensus 220 ~-~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~-l~~~~-~~--~i~~~d~~ 290 (492)
+ ....+. .+.++|..++...... .. ...... .......|. +++.. |.... +| .|++++..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~------~e-~~~~Wv----~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVL------EE-TSDGWV----DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEE------EE-ESSSSS----SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEE------Ee-cCCcce----eeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3 223322 3556677654321100 00 000000 111234443 65544 33333 45 47777776
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEE-Eeecc----C
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDC----G 365 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~-sg~~d----g 365 (492)
.+. .+.+....- .|..+..++++++.|+ ++..+ .
T Consensus 269 ~~~---------------------------------------~~~lT~G~~--~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 269 GGK---------------------------------------PRQLTSGDW--EVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp SSE---------------------------------------EEESS-SSS---EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred ccc---------------------------------------eeccccCce--eecccceEcCCCCEEEEEecCCCCCce
Confidence 531 122222222 2555444488877554 44432 3
Q ss_pred eEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEee
Q 011160 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG 404 (492)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 404 (492)
.|+.-++..+..+..|....+.-..+.|||++++++-..
T Consensus 308 ~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 308 HLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 566666762344455654443336899999999877543
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.41 E-value=0.0021 Score=61.63 Aligned_cols=215 Identities=15% Similarity=0.097 Sum_probs=113.5
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
+.++.+++.++.|.-.|..+|+++-+...... .. . .....+...-..+++. +..++.++.|+.|.-.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~----~~---~---~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP----DD---V---IPVMCCDVVNRGVALY--DGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC----cc---c---ccccccccccccceEE--CCEEEEEcCCCEEEEEE
Confidence 34566667788899999999987732100000 00 0 0000000000012222 34577778899999999
Q ss_pred CCCCceeeeeccCcCcceEEEEecCC-CCCceEEeec------CCCcEEEEecccCCeeeeEEeecC-------------
Q 011160 90 WKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTCA------ADGQVRHAQILERGGVETKLLGKH------------- 149 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~------~dg~v~iw~~~~~~~~~~~~~~~~------------- 149 (492)
..+|+.+..........-..+.-+|. .++. ++++. .+|.|.-+|..+++.+-.......
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~ 215 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVG 215 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccc
Confidence 99999877663211110011111121 0343 44433 267898889888876543211100
Q ss_pred ----------------CCceE-EEEEcCCCCcEEEEEcC-----CC-----------cEEEEeCCCCCccceeecCCCCC
Q 011160 150 ----------------QGRAH-KLAIEPGSPHVFYTCGE-----DG-----------LVQHFDLRTGAATELFTCRPIDD 196 (492)
Q Consensus 150 ----------------~~~v~-~i~~~~~~~~~l~~~~~-----dg-----------~i~iwd~~~~~~~~~~~~~~~~~ 196 (492)
...+. .+++.|.. .+++.+.. .+ +|.-.|+++++..-.++......
T Consensus 216 ~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~ 294 (527)
T TIGR03075 216 GEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDE 294 (527)
T ss_pred cccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCC
Confidence 01111 34566655 34555441 12 67788999999887776543322
Q ss_pred CCcceeecceEEEEEcCCCC--ceEEEecCCCeEEEEeccccccc
Q 011160 197 RRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
.... ......-+.+..++. ..++.+.++|.+++.|.++++.+
T Consensus 295 wD~d-~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 295 WDYD-GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccc-CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2111 111122233323422 37889999999999999999875
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.37 E-value=0.0015 Score=58.01 Aligned_cols=274 Identities=16% Similarity=0.168 Sum_probs=128.1
Q ss_pred EEcCCCCEEEEecC-C--CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeE
Q 011160 68 SFNTDGDILISGSD-D--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (492)
Q Consensus 68 ~~s~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 144 (492)
+|.+||+.|+.++. + ..+.+-|+.+++..+-. .+-........++| +++.++-......|+-.|+.+.+....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~--~~~~~~Yv~~~~~l~~vdL~T~e~~~v- 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSP--DDRALYYVKNGRSLRRVDLDTLEERVV- 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-T--TSSEEEEEETTTEEEEEETTT--EEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEec--CCCeEEEEECCCeEEEEECCcCcEEEE-
Confidence 56788976665544 4 45667788888865443 33223344566778 777776555556888888888765443
Q ss_pred EeecCCCceEEEEEc--CCCCcEEEEEc-----------------------CCCcEEEEeCCCCCccceeecCCCCCCCc
Q 011160 145 LLGKHQGRAHKLAIE--PGSPHVFYTCG-----------------------EDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~--~~~~~~l~~~~-----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (492)
+......+-...|. .++ .. +++. ....|.-.|+.+++....+.
T Consensus 118 -y~~p~~~~g~gt~v~n~d~-t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--------- 185 (386)
T PF14583_consen 118 -YEVPDDWKGYGTWVANSDC-TK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--------- 185 (386)
T ss_dssp -EE--TTEEEEEEEEE-TTS-SE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---------
T ss_pred -EECCcccccccceeeCCCc-cE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---------
Confidence 33344444444453 344 23 3321 12345666777777655554
Q ss_pred ceeecceEEEEEcCCCCceEEEecC---CCe-EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCe
Q 011160 200 YMTVVNLNAIAIDPRNANLFAVAGS---DEY-TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (492)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~---dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (492)
...-+.-+.|+|.++.+|+.+-+ +.. -|||-+++...... +.... .....+..=-|.|+|..
T Consensus 186 --~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~-----------~v~~~-~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 186 --DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK-----------KVHRR-MEGESVGHEFWVPDGST 251 (386)
T ss_dssp --ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E-----------ESS----TTEEEEEEEE-TTSS-
T ss_pred --cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce-----------eeecC-CCCcccccccccCCCCE
Confidence 34457788999987777766542 221 36676654321100 00000 11234555568899876
Q ss_pred eEeec--C-C---cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEE
Q 011160 276 LVSYN--D-E---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349 (492)
Q Consensus 276 l~~~~--~-~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 349 (492)
|.--+ . + .|.-++..++. .. ..... .. ..-+.
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~------------------------------------~~--~~~~~-p~---~~H~~ 289 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGE------------------------------------RR--RLMEM-PW---CSHFM 289 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--------------------------------------EE--EEEEE--S---EEEEE
T ss_pred EEEEeecCCCCceEEEeeCCCCCC------------------------------------ce--EEEeC-Cc---eeeeE
Confidence 54322 2 2 25556665531 01 11111 01 12333
Q ss_pred eecCCCcEEEEeecc----------------CeEEEEecCCCeeeEEEecCC----------c-eeEEEeecCCCCeEE-
Q 011160 350 FFGPKCEYVVSGSDC----------------GRIFIWKKKGGELIRVIEADR----------H-VVNCIEPHPHSTVLA- 401 (492)
Q Consensus 350 ~~s~~g~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~~h~----------~-~v~~~~~s~~~~~l~- 401 (492)
. ++||++++-=+.| -.|++++++.++... +..|. . .=-...|+||+++++
T Consensus 290 s-s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF 367 (386)
T PF14583_consen 290 S-SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLF 367 (386)
T ss_dssp E--TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEE
T ss_pred E-cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEE
Confidence 3 7899988753332 257778887766532 21121 1 124578999999755
Q ss_pred EeeCCCCEEEeccC
Q 011160 402 SSGIESDIKILTPN 415 (492)
Q Consensus 402 s~~~dg~i~iw~~~ 415 (492)
++...|...||-++
T Consensus 368 ~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 368 RSDMEGPPAVYLVE 381 (386)
T ss_dssp EE-TTSS-EEEEEE
T ss_pred ECCCCCCccEEEEe
Confidence 55567877777554
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.37 E-value=6.1e-05 Score=74.51 Aligned_cols=211 Identities=12% Similarity=0.109 Sum_probs=127.3
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEE
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i 230 (492)
..|.++.|..+. +-++.+...|.|.+-|.++......-. -...|.+++|+|+ ..+++..+..+++.+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~-----------vd~GI~aaswS~D-ee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGN-----------VDNGISAASWSPD-EELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeee-----------ccCceEEEeecCC-CcEEEEEeCCcEEEE
Confidence 578889998887 467788888999998888765433222 3447999999998 678888887777766
Q ss_pred Eec----cccccc----------CCCCCCCCccccC---C----C------CcCC--CcccceEEEEEcCCCCeeEee--
Q 011160 231 YDI----RKYKWD----------GSTDFGQPADYFC---P----P------NLIG--DEQVGITGLAFSDQSELLVSY-- 279 (492)
Q Consensus 231 ~d~----~~~~~~----------~~~~~~~~~~~~~---~----~------~~~~--~~~~~i~~~~~s~~~~~l~~~-- 279 (492)
-+- -..+.. ....++.....+. - . .... .....=.++.|--||+++|+.
T Consensus 136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 432 111111 0001111000000 0 0 0000 011223468999999999883
Q ss_pred ---cC-CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC
Q 011160 280 ---ND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (492)
Q Consensus 280 ---~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g 355 (492)
.+ .+|++||.... .... ...... .-.+++| -|.|
T Consensus 216 ~~~~~~RkirV~drEg~-Lns~---------------------------------se~~~~-------l~~~LsW-kPsg 253 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDREGA-LNST---------------------------------SEPVEG-------LQHSLSW-KPSG 253 (1265)
T ss_pred eccCCceeEEEecccch-hhcc---------------------------------cCcccc-------cccceee-cCCC
Confidence 33 47999997721 1110 000111 1246777 8999
Q ss_pred cEEEEe---eccCeEEEEecC---CCeeeEEEecCCceeEEEeecCCCCeEEE---eeCCCCEEEeccCC
Q 011160 356 EYVVSG---SDCGRIFIWKKK---GGELIRVIEADRHVVNCIEPHPHSTVLAS---SGIESDIKILTPNA 416 (492)
Q Consensus 356 ~~l~sg---~~dg~i~iwd~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s---~~~dg~i~iw~~~~ 416 (492)
.++|+- ..|+.|.+|.-+ .|+..-.+.....+|..++|+.++..||. ......|++|-+.+
T Consensus 254 s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 254 SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 999875 345679999853 22222233333445999999999999887 44444599998876
No 339
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.34 E-value=0.0032 Score=60.48 Aligned_cols=209 Identities=15% Similarity=0.078 Sum_probs=111.9
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceE----------EEEecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF----------QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
+..|+.++.++.|.-.|..+|+.+.++...-...+. .+++ .+..++.++.++.|.-.|..+++.+-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 456777777888999999999988776322111111 1222 23567778889999999999988776
Q ss_pred eEEeecCCC--ceEEEEEcCCCCcEEEEEc------CCCcEEEEeCCCCCccceeecCCCCCC------------C----
Q 011160 143 TKLLGKHQG--RAHKLAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDR------------R---- 198 (492)
Q Consensus 143 ~~~~~~~~~--~v~~i~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~------------~---- 198 (492)
......+.. .+++--.--++ . ++++. .+|.|..+|.++++.+-.+...+.... .
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g-~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKG-K-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred ecccccccccccccCCcEEECC-E-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 533322211 11111001133 3 44443 268999999999998766544322100 0
Q ss_pred ------cceeecceEEEEEcCCCCceEEEecCC-----C-----------eEEEEecccccccCCCCCCCCccccCCCCc
Q 011160 199 ------NYMTVVNLNAIAIDPRNANLFAVAGSD-----E-----------YTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (492)
Q Consensus 199 ------~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g-----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (492)
.+.....=..+++.|. ..+++.+..+ + .|.-.|+++++..-.++... ...
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~-~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-------~D~ 294 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPE-TNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-------HDE 294 (527)
T ss_pred CCCCccccCCCCccCceeEcCC-CCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC-------CCC
Confidence 0001111124577776 3455555422 2 46666777776543322200 000
Q ss_pred CCC-cccceEEEEEcCCCC---eeEeec-CCcEEEEecCCCCCC
Q 011160 257 IGD-EQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGP 295 (492)
Q Consensus 257 ~~~-~~~~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~ 295 (492)
..- ......-+.+..+|+ .++.+. ++.++++|..+++..
T Consensus 295 wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 295 WDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 000 001112223334665 566666 668999999998764
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.32 E-value=8.1e-05 Score=69.93 Aligned_cols=196 Identities=12% Similarity=0.030 Sum_probs=110.6
Q ss_pred CCCCCceEee-ccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC-
Q 011160 6 NNNNNKRART-SVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR- 83 (492)
Q Consensus 6 ~~~~~~~l~t-~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~- 83 (492)
.+|+|+.+.. .-..+.+.+.|.++.++. .++.- .+.-..++++|+|+++++.+.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~---------------------~qV~V-dgnpd~v~~spdGk~afvTsyNsE 257 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVA---------------------WQVMV-DGNLDNVDTDYDGKYAFSTCYNSE 257 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEE---------------------EEEEe-CCCcccceECCCCCEEEEeccCcc
Confidence 4667765433 334466777777754443 12111 22345678999999998876422
Q ss_pred ---eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc----CCeeeeEEeecCCCceEEE
Q 011160 84 ---RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE----RGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 84 ---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~~~v~~i 156 (492)
++..-+..+...+..+ ....+ -++.+ +|++...+ ++.|.+.|..+ +..+.. .-.-......+
T Consensus 258 ~G~tl~em~a~e~d~~vvf---ni~~i--ea~vk--dGK~~~V~--gn~V~VID~~t~~~~~~~v~~--yIPVGKsPHGV 326 (635)
T PRK02888 258 EGVTLAEMMAAERDWVVVF---NIARI--EEAVK--AGKFKTIG--GSKVPVVDGRKAANAGSALTR--YVPVPKNPHGV 326 (635)
T ss_pred cCcceeeeccccCceEEEE---chHHH--HHhhh--CCCEEEEC--CCEEEEEECCccccCCcceEE--EEECCCCccce
Confidence 2222222221111111 00000 02334 67666653 56899999887 222222 22234567889
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCC-cceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR-NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
.++|||.++++++..+.+|.+.|+.+.+....-+........ .-.-.......+|.++ ++...+...|..|..|++..
T Consensus 327 ~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 327 NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 999999877777788999999999886532100000000000 0001123456789988 67888888999999999976
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.31 E-value=0.00039 Score=64.37 Aligned_cols=232 Identities=13% Similarity=0.165 Sum_probs=114.7
Q ss_pred cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEE-eCCCC
Q 011160 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF-DLRTG 183 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iw-d~~~~ 183 (492)
-....+.++| +++.++++ .+|.-.|+......... .+.-...+|.+.+ .+++-...+.|.++ ++. .
T Consensus 33 ~~p~~ls~np--ngr~v~V~-g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~-~ 99 (443)
T PF04053_consen 33 IYPQSLSHNP--NGRFVLVC-GDGEYEIYTALAWRNKA-------FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFK-N 99 (443)
T ss_dssp S--SEEEE-T--TSSEEEEE-ETTEEEEEETTTTEEEE-------EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTE-E
T ss_pred cCCeeEEECC--CCCEEEEE-cCCEEEEEEccCCcccc-------cCceeEEEEecCc--cEEEEECCCeEEEEEcCc-c
Confidence 3578899999 99988885 46777777733222111 1344578898855 46777778889996 332 2
Q ss_pred CccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccc
Q 011160 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (492)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (492)
.....+.. ...+..+-. |.+|...+. +.|.+||..+++.+..... ..
T Consensus 100 ~~~k~i~~-----------~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-----------------~~ 146 (443)
T PF04053_consen 100 EVVKSIKL-----------PFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRRIDV-----------------SA 146 (443)
T ss_dssp -TT----------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS------------------E
T ss_pred ccceEEcC-----------CcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeEEec-----------------CC
Confidence 22223321 112333322 456665544 4899999999876554221 24
Q ss_pred eEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccce
Q 011160 264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (492)
Q Consensus 264 i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (492)
|..+.|+++|.+++..+++.+++++.+....... ..+ ........+.. -..
T Consensus 147 vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~--------------------------~~~-g~e~~f~~~~E--~~~ 197 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAI--------------------------PEE-GVEDAFELIHE--ISE 197 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHB--------------------------TTT-B-GGGEEEEEE--E-S
T ss_pred CcEEEEECCCCEEEEEeCCeEEEEEecchhcccc--------------------------ccc-CchhceEEEEE--ecc
Confidence 8899999999999999999988887653100000 000 00001122222 122
Q ss_pred eeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 344 ~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
.|.+.+| ..+ -++.+ +.. .|+. +-.|+. ..+..-..++.-+...|..+.+.....|+.|..+.+...+
T Consensus 198 ~IkSg~W-~~d-~fiYt-T~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 198 RIKSGCW-VED-CFIYT-TSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp --SEEEE-ETT-EEEEE--TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred eeEEEEE-EcC-EEEEE-cCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 3778887 444 33333 333 6665 334432 2222224567777788877888888899999999887643
No 342
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.28 E-value=0.0013 Score=57.98 Aligned_cols=244 Identities=14% Similarity=0.107 Sum_probs=130.8
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEE-----
Q 011160 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL----- 145 (492)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~----- 145 (492)
..++.|+.|..+| +.++++........+ .+...|..+...| +-+.|++-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899999988 899998433333333 2334499999998 766666655 4999999987654333110
Q ss_pred -------eecCCCceEEEE--EcCCCCcEEEEEcCCCcEEEEeCCCCC-----ccceeecCCCCCCCcceeecceEEEEE
Q 011160 146 -------LGKHQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTGA-----ATELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 146 -------~~~~~~~v~~i~--~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
.......+...+ -...+. ..++......|.+|...... ....+. -...+..++|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-----------lp~~~~~i~~ 146 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-----------LPDPPSSIAF 146 (275)
T ss_pred ccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEE-----------cCCCcEEEEE
Confidence 011122344443 122332 33444455688888877642 223333 2346788999
Q ss_pred cCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCC
Q 011160 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 212 ~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
.+ +.++.|..+ ...+.|+.++....-....... ...........++..+.. +++.+|++. ++.-.+.+...
T Consensus 147 ~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~~g~fv~~~G 217 (275)
T PF00780_consen 147 LG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSS---SSFKSRNSSSKPLGIFQL-SDNEFLLCY-DNIGVFVNKNG 217 (275)
T ss_pred eC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCc---chhhhcccCCCceEEEEe-CCceEEEEe-cceEEEEcCCC
Confidence 84 366666544 4788898866532211111000 000000111223333333 345666654 33333333332
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
. . .....+..... ..++.+. ..||+.-.. +.|.||+
T Consensus 218 ~-~------------------------------------~r~~~i~W~~~---p~~~~~~---~pyli~~~~-~~iEV~~ 253 (275)
T PF00780_consen 218 E-P------------------------------------SRKSTIQWSSA---PQSVAYS---SPYLIAFSS-NSIEVRS 253 (275)
T ss_pred C-c------------------------------------CcccEEEcCCc---hhEEEEE---CCEEEEECC-CEEEEEE
Confidence 1 0 00123333332 3556552 347776665 5599999
Q ss_pred cCCCeeeEEEecCC
Q 011160 372 KKGGELIRVIEADR 385 (492)
Q Consensus 372 ~~~~~~~~~~~~h~ 385 (492)
+.++++++.+....
T Consensus 254 ~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 254 LETGELVQTIPLPN 267 (275)
T ss_pred CcCCcEEEEEECCC
Confidence 99999999887553
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.26 E-value=0.0035 Score=57.88 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=60.1
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+.++++ +|+...++.|+.||.|.+||...+... +....-.++.++|+|+|.++++|+.-|.+.+||+.-..
T Consensus 262 v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCAR-SPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEec-CcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 788888 999999999999999999998766332 22334458999999999999999999999999997653
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=5.5e-05 Score=69.26 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=63.7
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 138 (492)
...+.|.|++++|+...|+.|+.||.|++||...+..... ...-..+.++|+| +|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp--~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHP--DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcC--CCcEEEEEcCCceEEEEEeecC
Confidence 4678899999999999999999999999999876643322 3445678999999 9999999999999999998643
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.23 E-value=0.0019 Score=53.08 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=81.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
..+++.|+..+.+.--|..+|....+. .-...|.+-+.- -|++++.|+..|.+++.+..++......... +.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeeh---hh
Confidence 467888899999999999999876654 233455544443 4678999999999999999998766542222 22
Q ss_pred eE-EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeec
Q 011160 153 AH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (492)
Q Consensus 153 v~-~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (492)
|. .....+++ .++..++.|++.+..|.++..++...++
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEecccccceEEeccc
Confidence 22 23455667 5899999999999999999998877665
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.23 E-value=0.0024 Score=61.04 Aligned_cols=212 Identities=13% Similarity=0.065 Sum_probs=112.7
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcC-----cceE--EEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEE
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHN-----DNVF--QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~--~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 145 (492)
+..++.++.++.|.-.|..+|+.+.++..... ..+. .+... ++..++.++.+|.|.-+|..+++.+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 44566777789999999999998776632221 0010 11111 22678888889999999999988776543
Q ss_pred eecCC---CceE-EEEEcCCCCcEEEEEc---------CCCcEEEEeCCCCCccceeecCCCCC--CCcce--------e
Q 011160 146 LGKHQ---GRAH-KLAIEPGSPHVFYTCG---------EDGLVQHFDLRTGAATELFTCRPIDD--RRNYM--------T 202 (492)
Q Consensus 146 ~~~~~---~~v~-~i~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~--------~ 202 (492)
...+. ..+. ...+. ++ +++.++ .+|.+..+|..+++.+..+....... .+... .
T Consensus 138 ~~~~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred CCCCcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 33221 0011 11222 12 344443 46789999999999887765421110 00000 0
Q ss_pred ecce-EEEEEcCCCCceEEEecCCC------------------eEEEEecccccccCCCCCCCCccccCCCCcCCCccc-
Q 011160 203 VVNL-NAIAIDPRNANLFAVAGSDE------------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV- 262 (492)
Q Consensus 203 ~~~v-~~~~~~p~~~~~l~~~~~dg------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 262 (492)
...+ ...++.+. +..++.++.++ .|.-+|..+++..-......+... .......
T Consensus 215 g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~-----~~~~~s~p 288 (488)
T cd00216 215 GGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW-----DYDGPNQP 288 (488)
T ss_pred CCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc-----ccccCCCC
Confidence 0001 13455554 35677776655 688889988876544322111000 0000000
Q ss_pred ceEEEEEcCCCC---eeEeec-CCcEEEEecCCCCCCCC
Q 011160 263 GITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNP 297 (492)
Q Consensus 263 ~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~~~ 297 (492)
.+..+. .-++. .++.++ ++.++.+|..+++....
T Consensus 289 ~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 289 SLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred eEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 111111 11232 445554 67899999988765543
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=5e-05 Score=72.10 Aligned_cols=111 Identities=11% Similarity=0.060 Sum_probs=85.3
Q ss_pred EEEEEcCCCCEEEEecC----CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 65 NTVSFNTDGDILISGSD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 65 ~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
+-..|+|...++|.++. .|.|.||- ++|++.... ...-.+++++|+| ..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHP--EEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccCh--HHHHHhhccccceeEEEecCCcee
Confidence 44679999999888754 57898885 667754333 1223467799999 777788888889999999766543
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (492)
-. ....|+.+|..+.|+++| ..++++..-|.+.+|.....
T Consensus 94 ht--v~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 94 HT--VVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred ee--eccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeeec
Confidence 32 356799999999999999 58999999999999987643
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.0002 Score=66.06 Aligned_cols=190 Identities=18% Similarity=0.131 Sum_probs=114.4
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEcCC---CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 146 LGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 146 ~~~~~~~v~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
+......+..-+|+|++..+.+..-.. ..+.++++.+++........ ..-...+|+|++..++++.
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-----------g~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-----------GNNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-----------CccCCccCCCCCCEEEEEE
Confidence 333445667778999986544443222 35999999998877666522 2335568999976777777
Q ss_pred cCCCe--EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC----cEEEEecCCCCCCC
Q 011160 223 GSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPN 296 (492)
Q Consensus 223 ~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~----~i~~~d~~~~~~~~ 296 (492)
..||. |+++|+..++... +....+.-..=.|+|+|+.|+..++. .|.+++.+....
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~----------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-- 318 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPR----------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-- 318 (425)
T ss_pred CCCCCccEEEEcCCCCccee----------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--
Confidence 77776 4555666654211 11112222356799999999888743 377777765321
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc-Ce--EEEEecC
Q 011160 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GR--IFIWKKK 373 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d-g~--i~iwd~~ 373 (492)
..+...... -..-.+ +|||++|+..+.. |. |.+.++.
T Consensus 319 -------------------------------------~riT~~~~~--~~~p~~-SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 319 -------------------------------------TRLTFSGGG--NSNPVW-SPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred -------------------------------------eEeeccCCC--CcCccC-CCCCCEEEEEeccCCceeeEEeccC
Confidence 112211111 012333 9999999876643 44 7777776
Q ss_pred CCeeeEEEecCCceeEEEeecCCCCeEEEeeC
Q 011160 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
++..++.+. +........|.|+++.+...+.
T Consensus 359 ~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 359 SGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 666544443 3334556778888887765543
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00034 Score=64.49 Aligned_cols=159 Identities=11% Similarity=0.120 Sum_probs=96.7
Q ss_pred CcCcceEEEEecCCCCCceEEeec---CC-CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCc--E
Q 011160 102 GHNDNVFQAKIMPFTDDRSIVTCA---AD-GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL--V 175 (492)
Q Consensus 102 ~~~~~v~~~~~~~~~~~~~l~~~~---~d-g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i 175 (492)
.-...+..-+|+| ++..++... .. ..+.++++.++.......+.++. ..-+|+|+|.+++++...||. |
T Consensus 190 ~~~~~~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 190 DSGSLILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ccCcceeccccCc--CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccE
Confidence 3344677788998 887766442 22 46899999888766554444443 456899999888888888886 5
Q ss_pred EEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE--ecccccccCCCCCCCCccccCC
Q 011160 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY--DIRKYKWDGSTDFGQPADYFCP 253 (492)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~~~~~~ 253 (492)
+++|+.++.... +.. ..+.-..-.|+|+|..++++.+..|.-.|| +.......
T Consensus 265 y~~dl~~~~~~~-Lt~----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-------------- 319 (425)
T COG0823 265 YLMDLDGKNLPR-LTN----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-------------- 319 (425)
T ss_pred EEEcCCCCccee-ccc----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee--------------
Confidence 666777766333 221 111122567999966666666667765554 44443211
Q ss_pred CCcCCCcccceEEEEEcCCCCeeEeec--CCc--EEEEecCCC
Q 011160 254 PNLIGDEQVGITGLAFSDQSELLVSYN--DEF--IYLFTQDMG 292 (492)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~--i~~~d~~~~ 292 (492)
.+.. ....-..-.|+|+|++|+..+ .+. |.+.++.++
T Consensus 320 -riT~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 320 -RLTF-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred -Eeec-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 0000 111112667999999988777 443 666666543
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.13 E-value=0.00089 Score=56.60 Aligned_cols=222 Identities=13% Similarity=0.118 Sum_probs=112.1
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
+.+.+-...+..++|.|+...++++....+.|..++.+ ++.+..+.... ....-.+++..+ +.++++.-
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---------~~D~EgI~y~g~-~~~vl~~E 83 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---------FGDYEGITYLGN-GRYVLSEE 83 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------SSEEEEEE-ST-TEEEEEET
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---------CCCceeEEEECC-CEEEEEEc
Confidence 44666667799999999876788888888999888874 67776665432 224567778764 56666655
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (492)
.++.+.++++.......... ....+ .......++..+-.++|+|.++.|+.+. ..-..+|.+........+.
T Consensus 84 r~~~L~~~~~~~~~~~~~~~---~~~~~-~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~--- 156 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRA---DVQKI-SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF--- 156 (248)
T ss_dssp TTTEEEEEEE----TT--EE---EEEEE-E---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E---
T ss_pred CCCcEEEEEEeccccccchh---hceEE-ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee---
Confidence 68999999985432110000 00000 0111223566799999999876665555 4446666665411000000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC-CcEEEEeeccCeEEEEecCCCeeeEEE
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~-g~~l~sg~~dg~i~iwd~~~~~~~~~~ 381 (492)
. .............. .+.++.+ +|. +.+++-...+..|.++| .+|+.+..+
T Consensus 157 ----~--------------------~~~~~~~~~~~~~~--d~S~l~~-~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 157 ----V--------------------SDDQDLDDDKLFVR--DLSGLSY-DPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp ----E--------------------EE-HHHH-HT--SS-----EEEE-ETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred ----e--------------------ccccccccccceec--cccceEE-cCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 0 00000000000111 1567777 664 56777777888999999 588877655
Q ss_pred ecCC---------ceeEEEeecCCCCeEEEeeCCCCEEEe
Q 011160 382 EADR---------HVVNCIEPHPHSTVLASSGIESDIKIL 412 (492)
Q Consensus 382 ~~h~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (492)
.-.. ...-.|+|.++|++.+++ .-+..+++
T Consensus 209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp E-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 3222 236789999999766554 44544443
No 351
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=98.06 E-value=0.0093 Score=54.61 Aligned_cols=295 Identities=13% Similarity=0.166 Sum_probs=150.8
Q ss_pred CCCEEEEecCCCeEEEEECCCCcee---eeeccCcCcceEEEEecCC---CCCceEEeecCCCcEEEEecccCC------
Q 011160 72 DGDILISGSDDRRVILWDWKTERVK---LSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERG------ 139 (492)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~------ 139 (492)
....|++|+..|.++||+....... .-+...-..+|..+..-.+ .+...||+ -.-..+.||.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3468999999999999998544311 1111234568888876543 12233444 445678888873321
Q ss_pred -eeeeEEeecCC--CceEEEEEcC----CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc
Q 011160 140 -GVETKLLGKHQ--GRAHKLAIEP----GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (492)
Q Consensus 140 -~~~~~~~~~~~--~~v~~i~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (492)
.........|. .....+++-| .+..++.+-+.||.+.+|+-+.-.....+.. ..-...++|.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-----------~llPgPl~Y~ 183 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-----------FLLPGPLCYC 183 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-----------CCCCcCeEEe
Confidence 11212233333 2233444433 2245788889999999998665443222221 1112456777
Q ss_pred CCCCceEEEecCCCeEEEEecccccccCCCCC---------CCCccccCCCC-cCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF---------GQPADYFCPPN-LIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 213 p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
|. ...|++++.+..+..|............. ........... ..+..--.|..+.++.....+++-+..
T Consensus 184 ~~-tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger 262 (418)
T PF14727_consen 184 PR-TDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGER 262 (418)
T ss_pred ec-CCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecc
Confidence 76 57888888888999887643221110000 00000000000 111111223334444444455555566
Q ss_pred cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEe-ecCC-CcEEEE
Q 011160 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPK-CEYVVS 360 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~s~~-g~~l~s 360 (492)
++...+.... ....+.+...........+.. ..|+ +..++.
T Consensus 263 ~Lf~l~~~G~-------------------------------------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV 305 (418)
T PF14727_consen 263 SLFCLKDNGS-------------------------------------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV 305 (418)
T ss_pred eEEEEcCCCe-------------------------------------EEEEEecCCceeeEEEEEeecccCCCCceEEEE
Confidence 6666654321 122233333222211222211 0222 125788
Q ss_pred eeccCeEEEEecCCCeeeEEEecCCce--eEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 361 GSDCGRIFIWKKKGGELIRVIEADRHV--VNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 361 g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
++.++++.||.= .+++-.-+....+ |.-..|..-...|++-+.+|.+.+-=+.+..
T Consensus 306 ~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 306 GTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 889999999963 3333222222222 3333344445689999999999998776653
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.05 E-value=0.00037 Score=49.53 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=69.5
Q ss_pred EEEEEEcC---CC-CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC
Q 011160 64 VNTVSFNT---DG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 64 v~~~~~s~---~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 139 (492)
|++|++.. || +.|+.|+.|..||+|+- .+.+..+ .-...|++++-.. +..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei--~e~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEI--TETDKVTSLCSLG---GGRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEE--ecccceEEEEEcC---CCEEEEEecCCEEEEEeCccee
Confidence 56666654 33 68999999999999983 4666666 3456788888875 4779999999999999853322
Q ss_pred eeeeEEeecCCCceEEEEEcC---CCCcEEEEEcCCCcEEE
Q 011160 140 GVETKLLGKHQGRAHKLAIEP---GSPHVFYTCGEDGLVQH 177 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~---~~~~~l~~~~~dg~i~i 177 (492)
.. .. ....++++.+.. +|-.-|++|-.+|.|-+
T Consensus 75 --WR--iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 --WR--IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --ee--ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 11 22 223456665543 44456889988887743
No 353
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=0.0015 Score=54.50 Aligned_cols=205 Identities=16% Similarity=0.195 Sum_probs=115.8
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecC-----CCeEEEEECCCCc-eeeeeccCcCcceEEEEecCCCCCceEEeecCC-
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSD-----DRRVILWDWKTER-VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD- 127 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d- 127 (492)
+.+.||. .|||||.+|...-. -|.|-|||...+- .+.++ ..|.-.-..+.+.+ ||+.++.+...
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~--DGrtlvvanGGI 183 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMA--DGRTLVVANGGI 183 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEec--CCcEEEEeCCce
Confidence 4455564 79999999986543 3789999987543 23444 66777778899999 99998876531
Q ss_pred -----------------CcEEEEecccCCeeeeEEee--cCCCceEEEEEcCCCCcEEEEEcCCC-----cEEEEeCCCC
Q 011160 128 -----------------GQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTG 183 (492)
Q Consensus 128 -----------------g~v~iw~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 183 (492)
-.+.+.|..+++.+.+..+. .+.-.|..++.-++|. +.+.+-..| --.+=-...+
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g 262 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKG 262 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCC
Confidence 12334444455544444444 4455678888888883 434332222 1112122233
Q ss_pred CccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccc
Q 011160 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (492)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (492)
+.+..+...+. ........|-+++.+.+.+...++.-..+...+||..++.......+ ..
T Consensus 263 ~~l~~~~~pee---~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-----------------~d 322 (366)
T COG3490 263 EPLEFLDLPEE---QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-----------------PD 322 (366)
T ss_pred CcCcccCCCHH---HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-----------------cc
Confidence 33333222111 00002235677888876454445555566678999999875433211 11
Q ss_pred eEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 264 ITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 264 i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
...++-. .+-+.++.+.+.+.++.-.
T Consensus 323 aaGva~~-~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 323 AAGVAAA-KGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred cccceec-cCceEEecCCceEEecccc
Confidence 1222222 2346777778888887543
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.03 E-value=0.0016 Score=63.98 Aligned_cols=204 Identities=12% Similarity=0.106 Sum_probs=117.5
Q ss_pred CCEEEEe-cCCCeEEEEECCCCceeeeeccCcC-cceEEEEecCC---CCCceEEeecCCCcEEEEecccCCe-eeeEE-
Q 011160 73 GDILISG-SDDRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGG-VETKL- 145 (492)
Q Consensus 73 ~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~- 145 (492)
.++|+.- .....|.-.|++.|+.+..+ ..|. .+|..++-... -.....+.|-.+..+..||.+-... +....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW-~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEW-KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEe-ecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 3444443 34577888899999999888 4444 33555433210 0134456677788899999986542 11100
Q ss_pred -eecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC
Q 011160 146 -LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 146 -~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (492)
........+|++-+.+| .||+|+.+|.|++||- .++...+.- ++ -..+|..|..+.+ |+++++.+
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~l-------p~--lG~pI~~iDvt~D-GkwilaTc- 637 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTAL-------PG--LGDPIIGIDVTAD-GKWILATC- 637 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcC-------CC--CCCCeeEEEecCC-CcEEEEee-
Confidence 11234567888888887 5899999999999994 332211110 11 3458999999998 56666544
Q ss_pred CCeEEEEecc--cccccCCCCCCCCcc---ccCCCC--cCC----------CcccceEEEEEcC----CCCeeEeecCCc
Q 011160 225 DEYTRLYDIR--KYKWDGSTDFGQPAD---YFCPPN--LIG----------DEQVGITGLAFSD----QSELLVSYNDEF 283 (492)
Q Consensus 225 dg~v~i~d~~--~~~~~~~~~~~~~~~---~~~~~~--~~~----------~~~~~i~~~~~s~----~~~~l~~~~~~~ 283 (492)
+..+.+++.. .++..+...+...+. ...|.. +.. +..-..+...|+- ..+.|++++..-
T Consensus 638 ~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f 717 (794)
T PF08553_consen 638 KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPF 717 (794)
T ss_pred cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCE
Confidence 4678888864 222222222222111 001111 111 1112233445542 345778777888
Q ss_pred EEEEecCC
Q 011160 284 IYLFTQDM 291 (492)
Q Consensus 284 i~~~d~~~ 291 (492)
+.+|++..
T Consensus 718 ~v~Wnf~k 725 (794)
T PF08553_consen 718 VVTWNFKK 725 (794)
T ss_pred EEEEEHHH
Confidence 99999875
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.02 E-value=0.0096 Score=58.47 Aligned_cols=68 Identities=7% Similarity=0.033 Sum_probs=52.1
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+.++.. -+|++||.- +..|++|++.+.+.++.-..|..++..+...-.+..++.|..-+.|.+-....
T Consensus 832 v~aL~~--fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 832 VYALVE--FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred eeehhh--hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 555554 378888754 56899999988877766667778899999988999999998888777655443
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.015 Score=53.69 Aligned_cols=267 Identities=12% Similarity=0.144 Sum_probs=160.7
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
+.+++..+......+. -+ .....+.+.| ++..++... ....+...+.. ....... ...-......+++++.+.
T Consensus 13 ~~v~~~~~~~~~~~~~-~~-~~~~~v~~~~--~g~~~~v~~~~~~~~~~~~~~-~n~~~~~-~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAIS-LG-RGPGGVAVNP--DGTQVYVANSGSNDVSVIDAT-SNTVTQS-LSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEee-cC-CCCceeEEcC--ccCEEEEEeecCceeeecccc-cceeeee-ccCCCccccceeeCCCCC
Confidence 6666665555444441 11 1456677777 664444433 22245555544 2222111 111113446788999987
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec--CCCeEEEEecccccccCC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~i~d~~~~~~~~~ 241 (492)
+.++....+..|.+.|..+.......... .....++++|+++...++-. .++.+.+.|..+.+....
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG-----------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVG-----------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeec-----------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 77777777899999998877766655432 14577899998555555544 378899999888765433
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
... ...+ ..++++|+|..++.+. ++.+.+++.........
T Consensus 156 ~~v---------------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~---------------------- 197 (381)
T COG3391 156 IPV---------------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRG---------------------- 197 (381)
T ss_pred Eec---------------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecc----------------------
Confidence 111 1122 7899999999776666 66899999665321100
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc---CeEEEEecCCCeeeEE-EecCCceeEEEeecC
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRV-IEADRHVVNCIEPHP 395 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d---g~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~ 395 (492)
.......-... -..+.+ +|+|+++...... +.+...|..++..... +..-......+..+|
T Consensus 198 -----------~~~~~~~~~~~---P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 198 -----------SVGSLVGVGTG---PAGIAV-DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred -----------ccccccccCCC---CceEEE-CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 00001111111 134555 9999976655443 5999999988877765 222111466789999
Q ss_pred CCCeEEEeeC-CCCEEEeccCCCCCCc
Q 011160 396 HSTVLASSGI-ESDIKILTPNAADRAT 421 (492)
Q Consensus 396 ~~~~l~s~~~-dg~i~iw~~~~~~~~~ 421 (492)
+|..+..... .+.+.+-|..+.....
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceee
Confidence 9998877744 4778888877755443
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.93 E-value=0.01 Score=53.59 Aligned_cols=135 Identities=15% Similarity=0.097 Sum_probs=76.1
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCC-----CceEEeecC----------CCcEEEEecccC----Ceeee
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAA----------DGQVRHAQILER----GGVET 143 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~----------dg~v~iw~~~~~----~~~~~ 143 (492)
..|++.|..+.+.+..+.-.....+.+++...+.+ ..+|++|.. .|.|.++++... .....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888877776655333334455554433222 467776653 288999999884 22222
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC-ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
..-....++|++++-. .+ +++++. .+.|.+|++...+ ....-... ....+.++... ++++++|
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~~l~~~~~~~---------~~~~i~sl~~~---~~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSKTLLKKAFYD---------SPFYITSLSVF---KNYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTSSEEEEEEE----------BSSSEEEEEEE---TTEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcccchhhheec---------ceEEEEEEecc---ccEEEEE
Confidence 2223456889998877 33 433333 4789999998887 33222211 11234555444 3477777
Q ss_pred cCCCeEEEEec
Q 011160 223 GSDEYTRLYDI 233 (492)
Q Consensus 223 ~~dg~v~i~d~ 233 (492)
.....+.++..
T Consensus 146 D~~~sv~~~~~ 156 (321)
T PF03178_consen 146 DAMKSVSLLRY 156 (321)
T ss_dssp ESSSSEEEEEE
T ss_pred EcccCEEEEEE
Confidence 66666666543
No 358
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.92 E-value=0.009 Score=50.33 Aligned_cols=218 Identities=13% Similarity=0.030 Sum_probs=121.2
Q ss_pred eeeeeeEeecCc-cceEEEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec
Q 011160 49 LRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (492)
Q Consensus 49 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 125 (492)
..+++++++... ..-...+.|..+|.++-+.+.-| .|+.+|+.+++......-...----.++.. ++......=
T Consensus 31 ~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTW 107 (264)
T PF05096_consen 31 YSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEES
T ss_pred eeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEe
Confidence 345566665522 34556788877888888887766 799999999987655422222222334443 344444445
Q ss_pred CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecc
Q 011160 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (492)
Q Consensus 126 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (492)
.++...+||..+-+.+....+. ..=..++ .++.. |+.......++++|..+.+....+...... ..-..
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~-Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g-----~pv~~ 176 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKR-LIMSDGSSRLYFLDPETFKEVRTIQVTDNG-----RPVSN 176 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S---SS--EEE--ECSSC-EEEE-SSSEEEEE-TTT-SEEEEEE-EETT-----EE---
T ss_pred cCCeEEEEccccceEEEEEecC---CcceEEE--cCCCE-EEEECCccceEEECCcccceEEEEEEEECC-----EECCC
Confidence 6788999999887776654443 3445666 35544 455555678999999888777666543211 02235
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
++-+.+-. +.+.|-.-....|...|..+++......+..-...............-.+.+|+.|....|...+..
T Consensus 177 LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 177 LNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 66777762 5666666667778888888877655433321111000000011124568999999987665555543
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0097 Score=52.39 Aligned_cols=227 Identities=16% Similarity=0.098 Sum_probs=118.9
Q ss_pred EecCCCCCce-EEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcccee
Q 011160 111 KIMPFTDDRS-IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELF 189 (492)
Q Consensus 111 ~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 189 (492)
.|.+ +... +.+--..+.|.-|+..++.... +. +...+.++.....+ ..|+++.. .+.+++.+++.....+
T Consensus 31 ~w~~--~~~~L~w~DI~~~~i~r~~~~~g~~~~---~~-~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDP--DRGALLWVDILGGRIHRLDPETGKKRV---FP-SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcC--CCCEEEEEeCCCCeEEEecCCcCceEE---EE-CCCCcccceeecCC-CeEEEEcc--ccEEEeccCCceeEEe
Confidence 4555 5553 3444456778888876553322 22 22333444443333 24454433 3667777666553222
Q ss_pred ecCCCCCCCcceeecceEEEEEcCCCCceEEEecC-----------CCeEEEEecccccccCCCCCCCCccccCCCCcCC
Q 011160 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-----------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (492)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
...... . .....+.....|+ +.+.++... -|.++.+|. .+. ...+..
T Consensus 102 ~~~~~~-~----~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~---------------~~~l~~ 159 (307)
T COG3386 102 AEPEDG-L----PLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG---------------VVRLLD 159 (307)
T ss_pred ccccCC-C----CcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcC-CCC---------------EEEeec
Confidence 211110 0 2235677888898 444443222 122333332 111 111222
Q ss_pred CcccceEEEEEcCCCCeeEeecC--CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCcee
Q 011160 259 DEQVGITGLAFSDQSELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (492)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (492)
.+-..-+.|+|||+++.|..+.. +.|+.|++........ .......
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~--------------------------------~~~~~~~ 207 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG--------------------------------GRRGFVD 207 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC--------------------------------CcceEEE
Confidence 23445678999999988777764 4677777653000000 0110111
Q ss_pred eccccceeeeeEEeecCCCcEEEEeeccC-eEEEEecCCCeeeEEEecCCceeEEEeec-CCCCeEEEe
Q 011160 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASS 403 (492)
Q Consensus 337 ~~~~~~~~v~~~~~~s~~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~ 403 (492)
... .....-.++. ..+|.+-+++-.+| .|.+|+.. |+++..+..+...+++++|- |+.+.|...
T Consensus 208 ~~~-~~G~PDG~~v-DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 208 FDE-EPGLPDGMAV-DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred ccC-CCCCCCceEE-eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 111 1111344555 78888876555554 99999987 99999988776778889985 444544433
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.90 E-value=4.2e-05 Score=43.64 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=34.8
Q ss_pred CeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
++++..+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788889999999999999999999999999996
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.021 Score=53.09 Aligned_cols=53 Identities=9% Similarity=0.198 Sum_probs=40.8
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecC-CceeEEEeecCCCC
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHST 398 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~ 398 (492)
+..++. ||+|++||.-..+|.+.+....-.+.+..+... .....+|.|.-+..
T Consensus 219 i~~iav-Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 219 IIKIAV-SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred eEEEEE-CCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 788998 999999999999999999987666666666544 34567777766543
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.88 E-value=0.0035 Score=57.26 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=98.4
Q ss_pred cCCCCEEEEe---------cCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 70 NTDGDILISG---------SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 70 s~~~~~l~s~---------~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
|||+++++.. +..+.+.|||+.+++..... .....+....|+| +|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~--~~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT--PPPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc--CCccccccceeec--CCCeeEEEe-cCceEEEECCCCCe
Confidence 5788777763 22467899999987764333 2256789999999 999988876 57899998876643
Q ss_pred eeeEEeec-------C---------CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeec
Q 011160 141 VETKLLGK-------H---------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (492)
Q Consensus 141 ~~~~~~~~-------~---------~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
... ...+ - -+.-..+-|+||+.++++.--.+..|..+.+-....... ...
T Consensus 76 ~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------------~yp 141 (353)
T PF00930_consen 76 TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------------QYP 141 (353)
T ss_dssp EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------------SS-
T ss_pred EEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------------cCC
Confidence 322 1112 0 112356889999965544444555555444321111000 000
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec-CC
Q 011160 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DE 282 (492)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~ 282 (492)
.+..+.+-.- |.-.. .-.+.++|+.+++.... .+..........+..+.|.++++ +++.-. ..
T Consensus 142 ~~~~~~YPk~-G~~np----~v~l~v~~~~~~~~~~~----------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 142 EVESIRYPKA-GDPNP----RVSLFVVDLASGKTTEL----------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp EEEEEE--BT-TS-------EEEEEEEESSSTCCCEE-------------HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred cccccccCCC-CCcCC----ceEEEEEECCCCcEEEe----------eeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence 2333333211 11111 11356678876653210 00100112356789999999998 444433 22
Q ss_pred ----cEEEEecCCC
Q 011160 283 ----FIYLFTQDMG 292 (492)
Q Consensus 283 ----~i~~~d~~~~ 292 (492)
.+.++|..++
T Consensus 207 q~~~~l~~~d~~tg 220 (353)
T PF00930_consen 207 QNRLDLVLCDASTG 220 (353)
T ss_dssp STEEEEEEEEECTT
T ss_pred CCEEEEEEEECCCC
Confidence 2666777653
No 363
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.87 E-value=0.021 Score=52.26 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=58.5
Q ss_pred EEEEcCCCCEEEEecCCCeEEE---EECC-CC----ceeeeec--cCcC--cceEEEEecCC---------CCCceEEee
Q 011160 66 TVSFNTDGDILISGSDDRRVIL---WDWK-TE----RVKLSFH--SGHN--DNVFQAKIMPF---------TDDRSIVTC 124 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~i---wd~~-~~----~~~~~~~--~~~~--~~v~~~~~~~~---------~~~~~l~~~ 124 (492)
.++.+|++.+||.+..+..+.+ |+.. .+ ....... -.+. ..|+++.+.|. .|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5688999999999988776665 6431 11 1111111 1122 57888888775 256789999
Q ss_pred cCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 125 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
..+|.|++|.- ++..+.. -.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~--Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLS--QLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHH--HhcCccceEEEEec
Confidence 99999999986 3443332 23366777777664
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.85 E-value=0.027 Score=52.98 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=71.1
Q ss_pred ceEEEEEEcCCCCEEEEe-cC----CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC---------
Q 011160 62 GCVNTVSFNTDGDILISG-SD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------- 127 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~-~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------- 127 (492)
-.+..++++|+|++||.+ +. ...|+++|+.+++.+...... .....+.|.+ +++.|+....+
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~--d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD--DGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT--TSSEEEEEECSTTTSS-CCG
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC--CCCEEEEEEeCcccccccCC
Confidence 345568899999998854 22 246999999999776543221 1223499999 87776654422
Q ss_pred --CcEEEEecccCCeeeeEEeecCCCc--eEEEEEcCCCCcEEEEEcCCC---cEEEEeCCCC
Q 011160 128 --GQVRHAQILERGGVETKLLGKHQGR--AHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTG 183 (492)
Q Consensus 128 --g~v~iw~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~~~~~dg---~i~iwd~~~~ 183 (492)
..|+.|.+.+........+...... ...+..++++..+++...... .+.+.++..+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 2477888776544322334443333 567888999965555444333 4677777664
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.83 E-value=5.3e-05 Score=43.19 Aligned_cols=36 Identities=44% Similarity=0.755 Sum_probs=32.6
Q ss_pred eEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
...+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456678999999999999999999999999999996
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.83 E-value=0.00058 Score=63.26 Aligned_cols=141 Identities=17% Similarity=0.173 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcE
Q 011160 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI 284 (492)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i 284 (492)
.+..+.++|. ++++++ +.+|...+|.....+. ...+.-..++|.+.+++.+.-...+|
T Consensus 34 ~p~~ls~npn-gr~v~V-~g~geY~iyt~~~~r~--------------------k~~G~g~~~vw~~~n~yAv~~~~~~I 91 (443)
T PF04053_consen 34 YPQSLSHNPN-GRFVLV-CGDGEYEIYTALAWRN--------------------KAFGSGLSFVWSSRNRYAVLESSSTI 91 (443)
T ss_dssp --SEEEE-TT-SSEEEE-EETTEEEEEETTTTEE--------------------EEEEE-SEEEE-TSSEEEEE-TTS-E
T ss_pred CCeeEEECCC-CCEEEE-EcCCEEEEEEccCCcc--------------------cccCceeEEEEecCccEEEEECCCeE
Confidence 4678999997 666666 5677888887432210 12345567889997776665557788
Q ss_pred EEE-ecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec
Q 011160 285 YLF-TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (492)
Q Consensus 285 ~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~ 363 (492)
.++ ++.. ...+.++.... +..+ |. |.+|+..+.
T Consensus 92 ~I~kn~~~---------------------------------------~~~k~i~~~~~---~~~I--f~--G~LL~~~~~ 125 (443)
T PF04053_consen 92 KIYKNFKN---------------------------------------EVVKSIKLPFS---VEKI--FG--GNLLGVKSS 125 (443)
T ss_dssp EEEETTEE----------------------------------------TT-----SS----EEEE--E---SSSEEEEET
T ss_pred EEEEcCcc---------------------------------------ccceEEcCCcc---cceE--Ec--CcEEEEECC
Confidence 886 3322 11122222111 3333 23 777777764
Q ss_pred cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
+ .|.+||+.+++.++.+... +|..+.|++++.+++-.+.+ .+.|++....
T Consensus 126 ~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 126 D-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp T-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred C-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 4 8999999999999999744 48999999999999988754 6777655443
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.74 E-value=0.0031 Score=44.91 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=67.9
Q ss_pred eEEEEecCCCC--CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC
Q 011160 107 VFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 107 v~~~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (492)
|++|++..+.. .+.|++|+.|..|++|+-. ..+.. +. -...|++++-...+ .|+.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--IT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--Ee-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcce-
Confidence 67788776532 2689999999999999843 23322 22 34677888777664 5899999999999975322
Q ss_pred ccceeecCCCCCCCcceeecceEEEEEcC---CCCceEEEecCCCeEEE
Q 011160 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDP---RNANLFAVAGSDEYTRL 230 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~v~i 230 (492)
+...+ .+..+.++++.. ++-.-|++|-.+|.|-+
T Consensus 74 -lWRiK-----------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 -LWRIK-----------SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -eeeec-----------cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22222 222355555543 33357889988888753
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.73 E-value=0.018 Score=50.73 Aligned_cols=250 Identities=11% Similarity=0.069 Sum_probs=127.4
Q ss_pred CCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeec-C-CC
Q 011160 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC-R-PI 194 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~~ 194 (492)
.++.|+.|..+| +.++++........ . .+...|..+...|+-+ .|++-+ |+.++++++..-........ . ..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~--i-~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTR--I-LKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcccee--E-eecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccc
Confidence 678899998888 89999832222211 1 1223499999999874 444443 49999999887655442110 0 00
Q ss_pred C--CCCcceeecceEEEE-EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC
Q 011160 195 D--DRRNYMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (492)
Q Consensus 195 ~--~~~~~~~~~~v~~~~-~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 271 (492)
. ..........+..++ -....+...++......|.+|.......... ... ..+ .-...+..++|.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~----~~~-----ke~--~lp~~~~~i~~~- 147 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS----KLL-----KEI--SLPDPPSSIAFL- 147 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc----cee-----EEE--EcCCCcEEEEEe-
Confidence 0 000000122344444 1122233444444555899888876321100 000 000 113567888888
Q ss_pred CCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee
Q 011160 272 QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (492)
Q Consensus 272 ~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (492)
+..|+.+..+...+.|+.++.....+..... .............+..+.
T Consensus 148 -~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~----------------------------~~~~~~~~~~~~~~~~~~-- 196 (275)
T PF00780_consen 148 -GNKICVGTSKGFYLIDLNTGSPSELLDPSDS----------------------------SSSFKSRNSSSKPLGIFQ-- 196 (275)
T ss_pred -CCEEEEEeCCceEEEecCCCCceEEeCccCC----------------------------cchhhhcccCCCceEEEE--
Confidence 5678888888899999986533221110000 000000000110122222
Q ss_pred cCCCcEEEEeeccCeEEEEecCCCeeeE--EEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcc
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 422 (492)
-+++.+|++- +..-.+.|. .|+..+ .+.-.. .+.++++ ...+|+..+. +.|.||++.++++.+.
T Consensus 197 ~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~-~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 197 LSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS-APQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred eCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC-chhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence 2445677653 333333343 554443 333322 4556666 3457777765 5599999999976543
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.72 E-value=0.0058 Score=60.23 Aligned_cols=148 Identities=9% Similarity=0.138 Sum_probs=90.2
Q ss_pred CceEEEe-cCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC------CCCeeEeecCCcEEEEe
Q 011160 216 ANLFAVA-GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD------QSELLVSYNDEFIYLFT 288 (492)
Q Consensus 216 ~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~~~i~~~d 288 (492)
.++|+.. .....|+-.|+..++.+..-.+. ...+|..++-.. +.+.++..+++.+..||
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~--------------~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVH--------------DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecC--------------CCcceeEecccccccccCCCceEEEECCCceEEec
Confidence 3444443 35678889999988865543221 122233333221 23456667788899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
.+....... ....+.+.... ...|++- +.+| +||+|+.+|.||
T Consensus 559 pR~~~~k~v--------------------------------~~~~k~Y~~~~---~Fs~~aT-t~~G-~iavgs~~G~IR 601 (794)
T PF08553_consen 559 PRLSGNKLV--------------------------------DSQSKQYSSKN---NFSCFAT-TEDG-YIAVGSNKGDIR 601 (794)
T ss_pred cCCCCCcee--------------------------------eccccccccCC---CceEEEe-cCCc-eEEEEeCCCcEE
Confidence 875310000 00111221111 2566665 5555 889999999999
Q ss_pred EEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
+||--..+....|.+-..+|..|..+.||++|+..+ +..|.+++..
T Consensus 602 Lyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 602 LYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred eecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 999533333344667778999999999999988776 5677777763
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.72 E-value=0.0097 Score=53.69 Aligned_cols=145 Identities=9% Similarity=0.065 Sum_probs=90.1
Q ss_pred CCEEEEecC----------CCeEEEEECCCC-----ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc
Q 011160 73 GDILISGSD----------DRRVILWDWKTE-----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (492)
Q Consensus 73 ~~~l~s~~~----------d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 137 (492)
..+|+.|.. .|.|.++++... +..........++|++++-. ++. |+++. .+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~---~~~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF---NGR-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE---TTE-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh---CCE-EEEee-cCEEEEEEccC
Confidence 467777643 288999999884 22222223457889998876 455 44333 37899999988
Q ss_pred CC-eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 138 RG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 138 ~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
.+ ..... .......+.++... + .+++.|.....+.++..+.... ...+.. .. ....++++.|-+++
T Consensus 117 ~~~l~~~~-~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~-------~~~~v~~~~~l~d~ 184 (321)
T PF03178_consen 117 SKTLLKKA-FYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVAR-DY-------QPRWVTAAEFLVDE 184 (321)
T ss_dssp TSSEEEEE-EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEE-ES-------S-BEEEEEEEE-SS
T ss_pred cccchhhh-eecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEe-cC-------CCccEEEEEEecCC
Confidence 87 33332 22233466676665 3 3788888888888875554221 222211 10 23458888888764
Q ss_pred CceEEEecCCCeEEEEeccc
Q 011160 216 ANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~ 235 (492)
..++.+..+|.+.++....
T Consensus 185 -~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 185 -DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SEEEEEETTSEEEEEEE-S
T ss_pred -cEEEEEcCCCeEEEEEECC
Confidence 5899999999999998863
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.04 Score=50.90 Aligned_cols=267 Identities=14% Similarity=0.128 Sum_probs=157.7
Q ss_pred eEEEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceE-EeecCCCcEEEEecccCCe
Q 011160 63 CVNTVSFNTDGDILISG-SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGG 140 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~ 140 (492)
....+...+++..+... .....+..-+.. ..........-...-..++.++ .+..+ +....++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~--~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNP--AGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCC--CCCeEEEecCCCCeEEEEcCcccce
Confidence 44567788888444333 222345555544 2222221111113345677777 77644 4455568999999766655
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEc--CCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
....... .....++++|+++.+.++-. .++.+.+.|..+.+........ ..+ ..++++|++...
T Consensus 109 ~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG----------~~P-~~~a~~p~g~~v 174 (381)
T COG3391 109 LGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG----------NTP-TGVAVDPDGNKV 174 (381)
T ss_pred eeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC----------CCc-ceEEECCCCCeE
Confidence 5442222 25678999999965555555 3688999999888877664321 112 789999995545
Q ss_pred EEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC----CcEEEEecCCCCC
Q 011160 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGLG 294 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----~~i~~~d~~~~~~ 294 (492)
+++-..++.|.+.|........ ... . ........-..+.++|+|.++....+ +.+...|..++..
T Consensus 175 yv~~~~~~~v~vi~~~~~~v~~-~~~---------~-~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGNSVVR-GSV---------G-SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEEecCCCeEEEEeCCCcceec-ccc---------c-cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 6666688999999977654331 000 0 00111234467889999986665552 3677777765321
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec-cCeEEEEecC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-dg~i~iwd~~ 373 (492)
... .+..... ....+.. +|+|+++.+... .+.+.+.|..
T Consensus 244 ~~~-------------------------------------~~~~~~~--~~~~v~~-~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 244 TAT-------------------------------------DLPVGSG--APRGVAV-DPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEe-------------------------------------ccccccC--CCCceeE-CCCCCEEEEEecCCCeEEEEeCC
Confidence 110 0111110 0244565 999999888744 4889999998
Q ss_pred CCeeeEEEecCC---ceeEEEeecCCC
Q 011160 374 GGELIRVIEADR---HVVNCIEPHPHS 397 (492)
Q Consensus 374 ~~~~~~~~~~h~---~~v~~~~~s~~~ 397 (492)
+......+.... ..+..+++.+..
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 284 TDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred CCceeeeecccccccccceeccceeec
Confidence 888777655433 235666665543
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.042 Score=51.10 Aligned_cols=195 Identities=11% Similarity=0.043 Sum_probs=96.4
Q ss_pred EEEcCCCCEEEEecCC----------C-eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 67 VSFNTDGDILISGSDD----------R-RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 67 ~~~s~~~~~l~s~~~d----------~-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
++.+|.|..||....+ . .|+||+.. |+.+.++.-.+ +.|.++.|.. ...|+....||.++++|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~---~e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS-GRIVGMGWTD---DEELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC-CCEEEEEECC---CCeEEEEEcCCEEEEEeC
Confidence 3445555555554332 2 59999955 66666653233 7999999985 455667778999999998
Q ss_pred ccCCeeeeE-----EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC-ccceeecCCCCCCCcceeecceEEE
Q 011160 136 LERGGVETK-----LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 136 ~~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
.... .... ...-....+....+..+| + +.-..++.+.+..--... ....+...+......+.........
T Consensus 109 ~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--i-vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 109 FGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--I-VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred CCce-eechhhhccccCcccccccccccCCCC--E-EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccce
Confidence 6332 1100 000111122223333344 2 333344555444322211 1111110000000000010000012
Q ss_pred EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEe
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d 288 (492)
.++.+ ....+....++.+.+.+-...+. . ...+++..++.||++++||... ++.+.+..
T Consensus 185 ~l~~~-~~~~i~~~~g~~i~~i~~~~~~~------------------i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 185 LLSSD-RVVEILLANGETIYIIDENSFKQ------------------I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred EeecC-cceEEEEecCCEEEEEEcccccc------------------c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 34443 33444445556666444332110 0 1245799999999999999888 46777776
Q ss_pred cC
Q 011160 289 QD 290 (492)
Q Consensus 289 ~~ 290 (492)
.+
T Consensus 245 sD 246 (410)
T PF04841_consen 245 SD 246 (410)
T ss_pred Cc
Confidence 54
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.023 Score=48.04 Aligned_cols=177 Identities=11% Similarity=0.109 Sum_probs=116.4
Q ss_pred ecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc
Q 011160 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (492)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 136 (492)
+.|-...|.++.|+|+.+.|.+......-.||=...|+.+.++.-..-...-.+.|.. ++.+.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--CCEEEEEehhcceEEEEEEc
Confidence 3455566999999999999988888888888877788888887433334456678876 77777777788888888876
Q ss_pred cCCeeee-----EEee--cC-CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 137 ERGGVET-----KLLG--KH-QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 137 ~~~~~~~-----~~~~--~~-~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
....... ..+. .+ ......++|.|.. +.|+.+-...-+.||........................-..+..
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 6532211 1121 12 4567789999988 467777777777777766433111111110000000012346788
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
+.|++..+++++-+.+++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 9999887788888888888887776543
No 374
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.69 E-value=0.013 Score=52.38 Aligned_cols=244 Identities=11% Similarity=0.103 Sum_probs=104.5
Q ss_pred ECCCCceeeeeccCcCcce-----EEEEecCCCCCceEEe-ecCCC--cEEEEecccCCeeeeEEeecCC-CceEEEEEc
Q 011160 89 DWKTERVKLSFHSGHNDNV-----FQAKIMPFTDDRSIVT-CAADG--QVRHAQILERGGVETKLLGKHQ-GRAHKLAIE 159 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~~-~~~dg--~v~iw~~~~~~~~~~~~~~~~~-~~v~~i~~~ 159 (492)
|..+|..+.++ ....... +.=+|.+ +|+.|+. +..+| .+.+.|+.+++..+ +.... .......++
T Consensus 16 D~~TG~~VtrL-T~~~~~~h~~YF~~~~ft~--dG~kllF~s~~dg~~nly~lDL~t~~i~Q---LTdg~g~~~~g~~~s 89 (386)
T PF14583_consen 16 DPDTGHRVTRL-TPPDGHSHRLYFYQNCFTD--DGRKLLFASDFDGNRNLYLLDLATGEITQ---LTDGPGDNTFGGFLS 89 (386)
T ss_dssp -TTT--EEEE--S-TTS-EE---TTS--B-T--TS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-
T ss_pred CCCCCceEEEe-cCCCCcccceeecCCCcCC--CCCEEEEEeccCCCcceEEEEcccCEEEE---CccCCCCCccceEEe
Confidence 55666666655 2222211 2235666 7866654 44455 45666766665444 33222 223346677
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEE--cCCCCceEEEec---C----------
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNANLFAVAG---S---------- 224 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~---~---------- 224 (492)
|++. .++-......|.-.|+++.+....+..+.. -+....| +.+ +..++-.- .
T Consensus 90 ~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~----------~~g~gt~v~n~d-~t~~~g~e~~~~d~~~l~~~~~ 157 (386)
T PF14583_consen 90 PDDR-ALYYVKNGRSLRRVDLDTLEERVVYEVPDD----------WKGYGTWVANSD-CTKLVGIEISREDWKPLTKWKG 157 (386)
T ss_dssp TTSS-EEEEEETTTEEEEEETTT--EEEEEE--TT----------EEEEEEEEE-TT-SSEEEEEEEEGGG-----SHHH
T ss_pred cCCC-eEEEEECCCeEEEEECCcCcEEEEEECCcc----------cccccceeeCCC-ccEEEEEEEeehhccCccccHH
Confidence 8874 444444556889999999886655554321 1112233 223 33332110 0
Q ss_pred ---------CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeecCC---c--EEEEec
Q 011160 225 ---------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE---F--IYLFTQ 289 (492)
Q Consensus 225 ---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~---~--i~~~d~ 289 (492)
...|...|+.+++. ...-.....+..+.|+|.. .+|+-|..| . -+||-+
T Consensus 158 f~e~~~a~p~~~i~~idl~tG~~----------------~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i 221 (386)
T PF14583_consen 158 FREFYEARPHCRIFTIDLKTGER----------------KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI 221 (386)
T ss_dssp HHHHHHC---EEEEEEETTT--E----------------EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE
T ss_pred HHHHHhhCCCceEEEEECCCCce----------------eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEE
Confidence 01122333333321 1111234567889999964 455555554 2 377877
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe-----ecc
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-----SDC 364 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg-----~~d 364 (492)
++. ....+.+..+... .+..=.||.|||..|..- +.+
T Consensus 222 ~~d-------------------------------------g~~~~~v~~~~~~-e~~gHEfw~~DG~~i~y~~~~~~~~~ 263 (386)
T PF14583_consen 222 NTD-------------------------------------GSNVKKVHRRMEG-ESVGHEFWVPDGSTIWYDSYTPGGQD 263 (386)
T ss_dssp ETT-------------------------------------S---EESS---TT-EEEEEEEE-TTSS-EEEEEEETTT--
T ss_pred EcC-------------------------------------CCcceeeecCCCC-cccccccccCCCCEEEEEeecCCCCc
Confidence 653 1122222223222 234445579999877642 335
Q ss_pred CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCC
Q 011160 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (492)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 406 (492)
..|.-+++.+++....... .....+.-++||++++-=|.|
T Consensus 264 ~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 264 FWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred eEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 5688888888865433222 234566778999987754444
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00014 Score=66.95 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=71.1
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEE-EEEEcCCCCEEEEecCCC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN-TVSFNTDGDILISGSDDR 83 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~ 83 (492)
-++|...++|++..+|.|-+..+. -+.+ .++.-|...++ +++|.|||++||.|-.||
T Consensus 27 ewnP~~dLiA~~t~~gelli~R~n-~qRl---------------------wtip~p~~~v~~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 27 EWNPKMDLIATRTEKGELLIHRLN-WQRL---------------------WTIPIPGENVTASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred EEcCccchhheeccCCcEEEEEec-ccee---------------------EeccCCCCccceeeeecCCCCEEEEEecCC
Confidence 467888899999999988887776 3333 45555666677 999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMP 114 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 114 (492)
+|++.|++++..+..+...-...|.++-|.+
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999988775445566788888865
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.61 E-value=0.018 Score=48.60 Aligned_cols=187 Identities=11% Similarity=0.075 Sum_probs=109.5
Q ss_pred CCCceEeeccCcc--eEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeE
Q 011160 8 NNNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (492)
Q Consensus 8 ~~~~~l~t~~~dg--~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (492)
.++.++-+.+.-| .|+.+|+.+|+.... ..+...- -=-.++... +++..-.-.++..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-------------------~~l~~~~-FgEGit~~~-d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-------------------VPLPPRY-FGEGITILG-DKLYQLTWKEGTG 112 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEE-------------------EE-TTT---EEEEEEET-TEEEEEESSSSEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-------------------EECCccc-cceeEEEEC-CEEEEEEecCCeE
Confidence 4566666655444 889999999887632 2222110 011223322 2333344567899
Q ss_pred EEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC---ceEEEEEcCCC
Q 011160 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGS 162 (492)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~ 162 (492)
.+||..+.+.+.++. ..+.=+.++. +++.|+.......+..+|..+-+............ .++-+.|. +|
T Consensus 113 f~yd~~tl~~~~~~~--y~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFP--YPGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp EEEETTTTEEEEEEE---SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred EEEccccceEEEEEe--cCCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 999999988888773 3345577774 77888888778899999987766655444443333 45566776 45
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC-----CcceeecceEEEEEcCCCCceEEEec
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
.+.+=.-....|...|..+|+....+........ ..+....-.+.|+++|..+.+++||=
T Consensus 186 -~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 186 -KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred -EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4656666677888899999988766543322110 01112345889999998777777763
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00041 Score=64.01 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=77.6
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceE-EEEecCCCCCceEEeecCCCcEEEEecccCC
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF-QAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 139 (492)
.-.|.-+.|+|.-.+||++..+|.|.+..+. .+.+.++ .-|...++ +++|.| ||+.|+.|-.||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRP--DGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecC--CCCEEEEEecCCeEEEEEccCCC
Confidence 3467789999999999999999999999988 6667777 44666666 999999 99999999999999999999887
Q ss_pred eeeeEEeecCCCceEEEEEcC
Q 011160 140 GVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.+... .......|.++-|.+
T Consensus 96 ~l~~~-~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSF-LFSVETDISKGIWDR 115 (665)
T ss_pred ceecc-ccccccchheeeccc
Confidence 76543 223456778888864
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0065 Score=55.33 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=98.2
Q ss_pred CCceEE-eecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCc------EEEEEcCCCcEEEEeCCCCCcccee
Q 011160 117 DDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH------VFYTCGEDGLVQHFDLRTGAATELF 189 (492)
Q Consensus 117 ~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~l~~~~~dg~i~iwd~~~~~~~~~~ 189 (492)
+.++|+ ++.....++-.|+..++.+.. +.-+.. |+-+.+.|+... .-+.|-.+..|.-||++-.... .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeE--Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEE--WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeE--eeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-ee
Confidence 444444 455556788888888887766 444444 777777776421 1245667888999998843321 11
Q ss_pred ecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEE
Q 011160 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (492)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (492)
...+. ..+.......|++-..+ .++++|+.+|.|++||- .+... ...+++-..+|..+..
T Consensus 420 ~~~q~---kqy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdr-i~~~A--------------KTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 420 AVVQS---KQYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDR-IGRRA--------------KTALPGLGDAIKHVDV 479 (644)
T ss_pred eeeec---cccccccccceeeecCC--ceEEEeecCCcEEeehh-hhhhh--------------hhcccccCCceeeEEe
Confidence 11111 11123445667776654 48999999999999997 43322 2233445678999999
Q ss_pred cCCCCeeEeecCCcEEEEecCC
Q 011160 270 SDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 270 s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
+.+|++|++.++..+.+.++.-
T Consensus 480 tadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 480 TADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred eccCcEEEEecccEEEEEEEec
Confidence 9999999999999888887653
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.051 Score=47.93 Aligned_cols=194 Identities=15% Similarity=0.176 Sum_probs=103.9
Q ss_pred EEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEE
Q 011160 67 VSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (492)
Q Consensus 67 ~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 145 (492)
-.|.++.. ++.+--..+.|.-|+..+++. ..+ .+...+.++.... .+..|+++.. -+.+++...+..+....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~--~~p~~~~~~~~~d--~~g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVF--PSPGGFSSGALID--AGGRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEE--ECCCCcccceeec--CCCeEEEEcc--ccEEEeccCCceeEEec
Confidence 35667666 455555678899999876654 223 2233344444433 4555665543 35667765554422111
Q ss_pred --eec-CCCceEEEEEcCCCCcEEEEEcCC------------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 146 --LGK-HQGRAHKLAIEPGSPHVFYTCGED------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 146 --~~~-~~~~v~~i~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
..+ .....+.+...|+|. +..+... |.|+.++. .+.....+.. +-..-+.|+
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~----------~~~~~NGla 169 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD----------DLTIPNGLA 169 (307)
T ss_pred cccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC----------cEEecCceE
Confidence 111 124567888999985 3444333 33444443 3333333221 123457899
Q ss_pred EcCCCCceEEEecCCCeEEEEeccc--ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC-cEEE
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYL 286 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~-~i~~ 286 (492)
|||++..++++=+..+.|.-|++.. +..... ..........+..-.++...+|.+.+++. .+ .|.+
T Consensus 170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----------~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----------RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVR 239 (307)
T ss_pred ECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----------ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEE
Confidence 9999545555555668888887763 111100 00111112334455677777887775544 33 7999
Q ss_pred EecC
Q 011160 287 FTQD 290 (492)
Q Consensus 287 ~d~~ 290 (492)
|+.+
T Consensus 240 ~~pd 243 (307)
T COG3386 240 FNPD 243 (307)
T ss_pred ECCC
Confidence 9877
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.043 Score=46.14 Aligned_cols=213 Identities=12% Similarity=0.100 Sum_probs=112.6
Q ss_pred EEEEEcCCC-CEEEEecCCCe-EEEEECCCCceeeeeccCcCc-ceEEEEecCCCCCceEEeecCC-----CcEEEEecc
Q 011160 65 NTVSFNTDG-DILISGSDDRR-VILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQIL 136 (492)
Q Consensus 65 ~~~~~s~~~-~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~ 136 (492)
..|+|+|.. .-++.+-.-|+ ..++|......+..+...... ---.-.|+| +|.+|+..-.| |.|-|||.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~--dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP--DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC--CCcEEEeecCCCCCCCceEEEEecc
Confidence 367788854 44555555554 567888877765554211111 112346899 99999876443 789999987
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC------------------CCcEEEEeCCCCCccceeecCCCCCCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE------------------DGLVQHFDLRTGAATELFTCRPIDDRR 198 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 198 (492)
.+ ....-.+..|.-....+.+.+||. .++.+.. .-++.+.|..++..+.....+...
T Consensus 149 ~~-fqrvgE~~t~GiGpHev~lm~DGr-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l--- 223 (366)
T COG3490 149 EG-FQRVGEFSTHGIGPHEVTLMADGR-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL--- 223 (366)
T ss_pred cc-cceecccccCCcCcceeEEecCCc-EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh---
Confidence 43 233334667777778899999995 5554421 123445555555555443322111
Q ss_pred cceeecceEEEEEcCCCCceEEEecC-CCeEEEEecccccccCCCCCCCCccccCC-CCcCCCcccceEEEEEcCCCCee
Q 011160 199 NYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSDQSELL 276 (492)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l 276 (492)
+...+..++..++ +. +..|+. .|.-. |. .-++....-+.+.+.... ......-...|-+++.+.+..++
T Consensus 224 ---~~lSiRHld~g~d-gt-vwfgcQy~G~~~--d~--ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 224 ---RQLSIRHLDIGRD-GT-VWFGCQYRGPRN--DL--PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred ---hhcceeeeeeCCC-Cc-EEEEEEeeCCCc--cC--CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 3345677777776 32 333321 11000 00 000000000111111100 00111123567788888777777
Q ss_pred Eeec-CC-cEEEEecCCCC
Q 011160 277 VSYN-DE-FIYLFTQDMGL 293 (492)
Q Consensus 277 ~~~~-~~-~i~~~d~~~~~ 293 (492)
+..+ .+ ...+||..++.
T Consensus 295 ~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred EEecCCCCeEEEEEcCCCc
Confidence 7666 44 68999999874
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.49 E-value=0.039 Score=51.96 Aligned_cols=237 Identities=17% Similarity=0.199 Sum_probs=121.9
Q ss_pred CCCCCCCceEeec-----cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE
Q 011160 4 ASNNNNNKRARTS-----VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (492)
Q Consensus 4 ~~~~~~~~~l~t~-----~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (492)
..++|+++++|.+ +....++++|+++|+.+. ..+..- .-..+.|.++++.|+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--------------------d~i~~~--~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--------------------DGIENP--KFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--------------------EEEEEE--ESEEEEECTTSSEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--------------------Cccccc--ccceEEEeCCCCEEEE
Confidence 4578999997753 334669999999997662 112211 1123899999887765
Q ss_pred ecCC-----------CeEEEEECCCCcee--eeeccCcCc-c-eEEEEecCCCCCceEEeecC---C-CcEEEEecccC-
Q 011160 79 GSDD-----------RRVILWDWKTERVK--LSFHSGHND-N-VFQAKIMPFTDDRSIVTCAA---D-GQVRHAQILER- 138 (492)
Q Consensus 79 ~~~d-----------~~i~iwd~~~~~~~--~~~~~~~~~-~-v~~~~~~~~~~~~~l~~~~~---d-g~v~iw~~~~~- 138 (492)
...+ ..|+.|.+.+.... ..+ ..... . ...+..++ ++++|+.... + ..+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf-e~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF-EEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE-C-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEE-eecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccC
Confidence 5332 34788888766542 223 33222 2 56788888 9988775332 2 45777777664
Q ss_pred --CeeeeEEeecCCCce-EEEEEcCCCCcEEEEEc---CCCcEEEEeCCCCCccc---eeecCCCCCCCcceeecceEEE
Q 011160 139 --GGVETKLLGKHQGRA-HKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATE---LFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 139 --~~~~~~~~~~~~~~v-~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
..... .+......+ ..+... .+ .+++... ..+.|...++....... .+... . ....+..+
T Consensus 264 ~~~~~~~-~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~-------~~~~l~~~ 332 (414)
T PF02897_consen 264 SPDAKPK-LLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-D-------EDVSLEDV 332 (414)
T ss_dssp TSS-SEE-EEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---S-------SSEEEEEE
T ss_pred CCcCCcE-EEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCC-C-------CceeEEEE
Confidence 11222 233333333 334333 33 3444332 23567777777766411 11110 0 11235555
Q ss_pred EEcCCCCceEEEecCCC--eEEEEecc-cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCee-Eeec-C---
Q 011160 210 AIDPRNANLFAVAGSDE--YTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-D--- 281 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg--~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~-~--- 281 (492)
.... ..+++....++ .|+++++. ..... . ......+.|..+...+++..+ +..+ -
T Consensus 333 ~~~~--~~Lvl~~~~~~~~~l~v~~~~~~~~~~-~--------------~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P 395 (414)
T PF02897_consen 333 SLFK--DYLVLSYRENGSSRLRVYDLDDGKESR-E--------------IPLPEAGSVSGVSGDFDSDELRFSYSSFTTP 395 (414)
T ss_dssp EEET--TEEEEEEEETTEEEEEEEETT-TEEEE-E--------------EESSSSSEEEEEES-TT-SEEEEEEEETTEE
T ss_pred EEEC--CEEEEEEEECCccEEEEEECCCCcEEe-e--------------ecCCcceEEeccCCCCCCCEEEEEEeCCCCC
Confidence 5543 45666655555 47788887 33211 1 111113345566655655433 2222 2
Q ss_pred CcEEEEecCCCC
Q 011160 282 EFIYLFTQDMGL 293 (492)
Q Consensus 282 ~~i~~~d~~~~~ 293 (492)
..++.||+.+++
T Consensus 396 ~~~y~~d~~t~~ 407 (414)
T PF02897_consen 396 PTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEETTTTC
T ss_pred CEEEEEECCCCC
Confidence 258888888753
No 382
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.33 E-value=0.11 Score=47.64 Aligned_cols=76 Identities=11% Similarity=0.206 Sum_probs=53.8
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCce----eEEEeecCC--------------CC-eEEEeeC
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV----VNCIEPHPH--------------ST-VLASSGI 405 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~~~~s~~--------------~~-~l~s~~~ 405 (492)
+.+++. +|++++.|+...=|.|.++|+.++..++.++|.... +....-... .. +++-+-.
T Consensus 310 ~~~i~~-sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 310 GESICL-SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEEEE-CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 678887 999999998877799999999999999888876542 111111111 01 2334556
Q ss_pred CCCEEEeccCCCCCCc
Q 011160 406 ESDIKILTPNAADRAT 421 (492)
Q Consensus 406 dg~i~iw~~~~~~~~~ 421 (492)
-|.|.||.+..+....
T Consensus 389 Rg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVA 404 (415)
T ss_pred CCeEEEEecCCCCEEE
Confidence 7899999998876554
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.28 E-value=0.14 Score=46.56 Aligned_cols=251 Identities=15% Similarity=0.090 Sum_probs=105.3
Q ss_pred CCceEee-ccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecC---cc----ceEEEEEEcCCCCEEEEec
Q 011160 9 NNKRART-SVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HR----GCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 9 ~~~~l~t-~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~~~~s~~~~~l~s~~ 80 (492)
..++|+. |-..+.|.|.|+.+.-..+ + +.++++. +. ..-..+.--|+|++++|+-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P---------------~--l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~l 148 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP---------------R--LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISAL 148 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS----------------E--EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC---------------c--eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEec
Confidence 4555555 4478899999988533221 1 1122221 11 2222333446888887752
Q ss_pred ------CCCeEEEEECCCCceeeeeccCc--CcceEEEEecCCCCCceEEeecC--------------------CCcEEE
Q 011160 81 ------DDRRVILWDWKTERVKLSFHSGH--NDNVFQAKIMPFTDDRSIVTCAA--------------------DGQVRH 132 (492)
Q Consensus 81 ------~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~--------------------dg~v~i 132 (492)
.-|-+.+.|-++.+....+.... ..--+...|.| ..+.++|... ..++.+
T Consensus 149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~v 226 (461)
T PF05694_consen 149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHV 226 (461)
T ss_dssp EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEE
T ss_pred cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEE
Confidence 23568888888777766663322 23456677777 6666666542 357999
Q ss_pred EecccCCeeeeEEeecCCCceEEEEEc--CCCCcEEEEEcCCCcEEEEeC-CCCCcc--ceeecCCCCCCCcc-------
Q 011160 133 AQILERGGVETKLLGKHQGRAHKLAIE--PGSPHVFYTCGEDGLVQHFDL-RTGAAT--ELFTCRPIDDRRNY------- 200 (492)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~l~~~~~dg~i~iwd~-~~~~~~--~~~~~~~~~~~~~~------- 200 (492)
||+.+.+.++...+......+..|.|. |+...-|+.+.-..+|..|-- +.++.. ..+....... ++.
T Consensus 227 WD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v-~~~~lp~ml~ 305 (461)
T PF05694_consen 227 WDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV-EGWILPEMLK 305 (461)
T ss_dssp EETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE---SS---GGGG
T ss_pred EECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc-Cccccccccc
Confidence 999998887775554333345567664 445444555555555655543 444321 1222211100 000
Q ss_pred ---eeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc---ccCCCCCCCCccccCCCCc-CCCcccceEEEEEcCCC
Q 011160 201 ---MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK---WDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQS 273 (492)
Q Consensus 201 ---~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~ 273 (492)
....-|+.|..|.|+..+.++.-..|.|+.||+.... +..+..++..+........ -..-.+...-+..|.||
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DG 385 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDG 385 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTS
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCC
Confidence 0133578999999855455566689999999997542 2222222211111100000 00112345667888888
Q ss_pred CeeEee
Q 011160 274 ELLVSY 279 (492)
Q Consensus 274 ~~l~~~ 279 (492)
+.|...
T Consensus 386 kRlYvT 391 (461)
T PF05694_consen 386 KRLYVT 391 (461)
T ss_dssp SEEEEE
T ss_pred eEEEEE
Confidence 877654
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0087 Score=54.56 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=89.0
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC--------CeeEeecCCcEEEEec
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--------ELLVSYNDEFIYLFTQ 289 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~~~~~~~i~~~d~ 289 (492)
++..+.....++-.|+..++.+..-.+ + ..|+-+.+.|+. +.|+.-++..|.-||.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~---------------~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKF---------------E-DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeec---------------c-CCcceeeccCCcchhcccccccEEeecCCceEEecc
Confidence 445566667788889988876544322 1 125556666654 3456666778999998
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccc--eeeeeEEeecCCCcEEEEeeccCeE
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC--VTVKGVNFFGPKCEYVVSGSDCGRI 367 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~s~~g~~l~sg~~dg~i 367 (492)
+-... ..+...++|.-. ....|.+- ..+ -+||+||.+|.|
T Consensus 412 Rv~~~------------------------------------~kl~~~q~kqy~~k~nFsc~aT-T~s-G~IvvgS~~GdI 453 (644)
T KOG2395|consen 412 RVQGK------------------------------------NKLAVVQSKQYSTKNNFSCFAT-TES-GYIVVGSLKGDI 453 (644)
T ss_pred cccCc------------------------------------ceeeeeeccccccccccceeee-cCC-ceEEEeecCCcE
Confidence 74211 011112222211 01344444 444 489999999999
Q ss_pred EEEecCCCeee-EEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 368 FIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 368 ~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
++||- .+... ..+++-..+|..+..+.+|++|+..+ +..+.+-++
T Consensus 454 RLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 454 RLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred Eeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 99998 44433 45677888999999999999988666 455555554
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.26 E-value=0.082 Score=51.44 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=86.5
Q ss_pred CCCCEEEEecCCC------eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC------CcEEEEecccC
Q 011160 71 TDGDILISGSDDR------RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILER 138 (492)
Q Consensus 71 ~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iw~~~~~ 138 (492)
..+.+++.||.++ .+..+|..++.............-.+++.. ++...++|+.+ ..+..||....
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE---CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3466778887773 677888887754322212233344555655 57888889888 35778888777
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC-----cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
.......+........ ++.. +| .+.++||.|| ++..||..+.+....-.... .........+
T Consensus 360 ~W~~~a~M~~~R~~~~-v~~l-~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--------~r~~~gv~~~-- 426 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFG-VAVL-DG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--------RRSGHGVAVL-- 426 (571)
T ss_pred ceeccCCccCccccce-eEEE-CC-EEEEEeccccccccccEEEecCCCCcccccCCCCc--------ceeeeEEEEE--
Confidence 6544322222211111 1111 34 5788898886 47788888776543321110 1111222333
Q ss_pred CCCceEEEecCCC------eEEEEeccccccc
Q 011160 214 RNANLFAVAGSDE------YTRLYDIRKYKWD 239 (492)
Q Consensus 214 ~~~~~l~~~~~dg------~v~i~d~~~~~~~ 239 (492)
++.+.++|+.++ .+..||..+.+..
T Consensus 427 -~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 427 -GGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred -CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 367888887554 4678888877643
No 386
>PHA02713 hypothetical protein; Provisional
Probab=97.21 E-value=0.058 Score=52.54 Aligned_cols=97 Identities=14% Similarity=0.222 Sum_probs=49.2
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC------CcEEEEecccCCeeeeEEeecCCCceEEEE
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~ 157 (492)
.+..||..+++....-.......-.+++.. ++..++.|+.+ ..+..||..+........+....... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV---DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE---CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 467788776653211100111111223332 67777777753 34777887776543322222111111 222
Q ss_pred EcCCCCcEEEEEcCCC-----cEEEEeCCCCCcc
Q 011160 158 IEPGSPHVFYTCGEDG-----LVQHFDLRTGAAT 186 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 186 (492)
.. ++ ++.+.||.++ .+..||..+.+..
T Consensus 349 ~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 349 VI-DD-TIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred EE-CC-EEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 22 34 5777787654 4788998877544
No 387
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.14 E-value=0.1 Score=50.80 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=127.4
Q ss_pred CCceEEeecCC------CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC------CcEEEEeCCCCC
Q 011160 117 DDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGA 184 (492)
Q Consensus 117 ~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~iwd~~~~~ 184 (492)
.+..++.|+.. ..+..+|..++.......+. ....-.++++..+ .+.++||.+ .++..||.++.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCc
Confidence 45666777766 35778888877655443333 2223345555543 588899988 357788988887
Q ss_pred ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCe-----EEEEecccccccCCCCCCCCccccCCCCcCCC
Q 011160 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-----TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (492)
....-... ..+ . ......+ ++.+.++|+.||. +..||..+.+.... .....
T Consensus 361 W~~~a~M~---~~R---~--~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-------------a~m~~ 416 (571)
T KOG4441|consen 361 WTPVAPMN---TKR---S--DFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-------------APMLT 416 (571)
T ss_pred eeccCCcc---Ccc---c--cceeEEE---CCEEEEEeccccccccccEEEecCCCCccccc-------------CCCCc
Confidence 54422111 100 1 1111222 3678889998865 66777776653211 11111
Q ss_pred cccceEEEEEcCCCCeeEeec-CC------cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccC
Q 011160 260 EQVGITGLAFSDQSELLVSYN-DE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (492)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~-~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (492)
.......+ .-+|++.++|+ ++ .+..||..++.....
T Consensus 417 ~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~----------------------------------- 459 (571)
T KOG4441|consen 417 RRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI----------------------------------- 459 (571)
T ss_pred ceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeec-----------------------------------
Confidence 11111112 22566666665 32 378888776532221
Q ss_pred CceeeccccceeeeeEEeecCCCcEEEEeeccC-----eEEEEecCCCeee--EEEecCCceeEEEeecCCCCeEEEeeC
Q 011160 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-----RIFIWKKKGGELI--RVIEADRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 333 ~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg-----~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
..+...... ..++ .-++.+.+.|+.|+ +|..||..+.+-. ..+......+..+.+ ++...+.||.
T Consensus 460 -~~M~~~R~~---~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~ 531 (571)
T KOG4441|consen 460 -APMNTRRSG---FGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGF 531 (571)
T ss_pred -CCccccccc---ceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecc
Confidence 111111111 1232 23678888888776 3777887665433 222222222222222 5677888888
Q ss_pred CC-----CEEEeccCCCCCCcccC
Q 011160 406 ES-----DIKILTPNAADRATLPT 424 (492)
Q Consensus 406 dg-----~i~iw~~~~~~~~~~~~ 424 (492)
|| +|..||+.+.+......
T Consensus 532 ~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 532 DGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cCccccceeEEcCCCCCceeeCCC
Confidence 76 68889888877665443
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.13 Score=43.71 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=86.6
Q ss_pred EEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
..+|...-.-.+..+.+.+-...+.++.|+|+. +.|++......-.++=...|+.+..+...... ..-.+
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~---------DpE~I 134 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS---------DPETI 134 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccC---------ChhHe
Confidence 444544333333333355556669999999999 46677777777777777778887776654321 23445
Q ss_pred EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-CcEEEEe
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFT 288 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~i~~~d 288 (492)
.+... +.++++--.++.+.++.+........... ...+.......+.....++|+|....|..+-+ +-+.||.
T Consensus 135 eyig~-n~fvi~dER~~~l~~~~vd~~t~~~~~~~-----~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~ 208 (316)
T COG3204 135 EYIGG-NQFVIVDERDRALYLFTVDADTTVISAKV-----QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFE 208 (316)
T ss_pred EEecC-CEEEEEehhcceEEEEEEcCCccEEeccc-----eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEE
Confidence 66654 56666666788888887765432111000 00011112223677899999998877777764 4466665
Q ss_pred cC
Q 011160 289 QD 290 (492)
Q Consensus 289 ~~ 290 (492)
+.
T Consensus 209 ~~ 210 (316)
T COG3204 209 VT 210 (316)
T ss_pred Ee
Confidence 54
No 389
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.12 E-value=0.19 Score=45.34 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCceeeccccceeeeeEEeec------CCCcEEEEeeccCeEEEEecCCCeeeE---E-EecCCceeEEEeecCCCCeEE
Q 011160 332 APQVYKGHRNCVTVKGVNFFG------PKCEYVVSGSDCGRIFIWKKKGGELIR---V-IEADRHVVNCIEPHPHSTVLA 401 (492)
Q Consensus 332 ~~~~~~~~~~~~~v~~~~~~s------~~g~~l~sg~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~~~~s~~~~~l~ 401 (492)
+...+..|.. +..+.|+. -.|.++++.-..+.|....+..+..+. . +......+..+++.|||.+++
T Consensus 245 P~~~~~~~~a---p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 245 PVFAYPPHSA---PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp -SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred cceeecCccc---cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence 3445555544 56666631 156677777667788888887553332 2 223444799999999999999
Q ss_pred EeeCCCCEE
Q 011160 402 SSGIESDIK 410 (492)
Q Consensus 402 s~~~dg~i~ 410 (492)
+.+.+|.|.
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 888888874
No 390
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.08 E-value=0.27 Score=46.18 Aligned_cols=158 Identities=10% Similarity=0.091 Sum_probs=85.6
Q ss_pred cceEEEEEEcCCCCEE-EEec--CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCC--CCceEEeecCCCcEEEEec
Q 011160 61 RGCVNTVSFNTDGDIL-ISGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT--DDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l-~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~v~iw~~ 135 (492)
-.+|..++|. ||+.+ +|.- .+|.+++= ....+ |.-..|..+.|.|.. +...|++......|.||.+
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSKVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccC---CccEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 3578899997 55544 4431 12222221 11222 333458999999942 2334555566789999998
Q ss_pred ccCC-----eeeeEEee-cCCCc--eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 136 LERG-----GVETKLLG-KHQGR--AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 136 ~~~~-----~~~~~~~~-~~~~~--v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
.... ....+... +..-+ ...+.|+|... +|++-.....-.+++++.....-..... ..+.|.
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~---------~~G~Ih 159 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIK---------TSGLIH 159 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEecc---------CCceEE
Confidence 6321 11111100 01111 24577999885 5444443333344555544332222211 455799
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
|.+|.+||.+++++.+..=.-++||-....
T Consensus 160 CACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred EEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 999999966666555555567899876553
No 391
>PHA02713 hypothetical protein; Provisional
Probab=97.03 E-value=0.036 Score=53.93 Aligned_cols=149 Identities=9% Similarity=0.117 Sum_probs=77.8
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC------------------
Q 011160 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG------------------ 128 (492)
Q Consensus 72 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------------------ 128 (492)
+|++.+.||.++ .+..||..+.+-...-...+...-.+++.. ++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccc
Confidence 577778888754 478899876543211100111111122221 677777777542
Q ss_pred -----cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC------CcEEEEeCCC-CCccceeecCCCCC
Q 011160 129 -----QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRT-GAATELFTCRPIDD 196 (492)
Q Consensus 129 -----~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~ 196 (492)
.+..||..+........+...... .+++.. ++ ++.+.|+.+ ..+..||.++ .+.........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--- 501 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--- 501 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccccc-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc---
Confidence 467788777655433222111111 122222 34 566777654 2467899887 55442221111
Q ss_pred CCcceeecceEEEEEcCCCCceEEEecCCC--eEEEEeccccc
Q 011160 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYK 237 (492)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~i~d~~~~~ 237 (492)
.......+++ ++.+.++|+.++ .+..||..+.+
T Consensus 502 -----~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 502 -----RLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred -----ccccceeEEE---CCEEEEEeeecceeehhhcCccccc
Confidence 1112223333 367888998888 67778887765
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.0033 Score=50.79 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=62.4
Q ss_pred CCceEeeccCcceEEEEeecc-CcchhhhhhhcccccccceeeeeeeEeecCccceEEE-EEEcCCCCEEEEecCCCeEE
Q 011160 9 NNKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNT-VSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~d~~i~ 86 (492)
.+..++.|..+|.|.+|+... |+... ....-...|-+ +.--.++.+..+++.||.|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d---------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir 127 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSD---------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIR 127 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHH---------------------hhhcccccceeccccccccceeEEeccCCcee
Confidence 345688899999999998872 12110 01111122222 33334566889999999999
Q ss_pred EEECCCCceeeeeccCcC-cceEEEEecCCCCCceEEee--cCCCcEEEEeccc
Q 011160 87 LWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTC--AADGQVRHAQILE 137 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~--~~dg~v~iw~~~~ 137 (492)
.|++.-.+.+... ..|+ .++.....+. .+..++.+ +.|..++.|++..
T Consensus 128 ~~n~~p~k~~g~~-g~h~~~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 128 ACNIKPNKVLGYV-GQHNFESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccCceeeee-ccccCCCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence 9999877765554 4565 3444444443 44555555 5555666666543
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.02 E-value=0.0027 Score=37.61 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=29.9
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV 95 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 95 (492)
...|.+++|+|...+||.|..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4543
No 394
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.00 E-value=0.19 Score=48.97 Aligned_cols=166 Identities=9% Similarity=0.017 Sum_probs=81.8
Q ss_pred cceEEEEecCCCCCceEEeec------CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-CcEEE
Q 011160 105 DNVFQAKIMPFTDDRSIVTCA------ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQH 177 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~i 177 (492)
..+.+.+++| +++.++... .|..-.||-...+..... ...+ ...+.-.|+|+|. .+++.... ..+++
T Consensus 350 ~~vsspaiSp--dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~-lt~g--~~~t~PsWspDG~-~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSR--SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ-VLEG--HSLTRPSWSLDAD-AVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECC--CCCEEEEEEeecCCCCCcceEEEEEeCCCccee-eecC--CCCCCceECCCCC-ceEEEecCcceEEE
Confidence 4678899999 998887654 244444554433322221 1222 2377889999984 44554322 22223
Q ss_pred EeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE---ecccccccCCCCCCCCccccCCC
Q 011160 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY---DIRKYKWDGSTDFGQPADYFCPP 254 (492)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~---d~~~~~~~~~~~~~~~~~~~~~~ 254 (492)
.+-.....+..+......... .....|..+.|+|| +..++... ++.|++- ....+.. .+. .+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpD-G~RiA~i~-~g~v~Va~Vvr~~~G~~----~l~------~~~ 489 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRD-GVRAAMII-GGKVYLAVVEQTEDGQY----ALT------NPR 489 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCC-CCEEEEEE-CCEEEEEEEEeCCCCce----eec------ccE
Confidence 222111111111111000000 02346999999999 55555544 4677763 3222220 000 011
Q ss_pred CcCCCcccceEEEEEcCCCCeeEeecCCc--EEEEecC
Q 011160 255 NLIGDEQVGITGLAFSDQSELLVSYNDEF--IYLFTQD 290 (492)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--i~~~d~~ 290 (492)
.+...-...+..+.|.+++.+++...+.. +...+++
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred EeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence 11222223457899999999765544443 4444444
No 395
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.98 E-value=0.12 Score=50.37 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCEEEEecCC------------CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 64 VNTVSFNTDGDILISGSDD------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
.+.-.|+|+|+.|++.... +.+.+.++..++... .....|..++|+| ||..++... +|.|.
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp--DG~RiA~i~-~g~v~ 471 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSR--DGVRAAMII-GGKVY 471 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECC--CCCEEEEEE-CCEEE
Confidence 7788999999888777532 222222333333211 2245799999999 999988765 47777
Q ss_pred E---EecccCCeee--eEEee-cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeC
Q 011160 132 H---AQILERGGVE--TKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (492)
Q Consensus 132 i---w~~~~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~ 180 (492)
+ -....+.... ...+. .-...+.++.|.+++. + +++..++...+|.+
T Consensus 472 Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L-~V~~~~~~~~v~~v 524 (591)
T PRK13616 472 LAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-L-VVGRSDPEHPVWYV 524 (591)
T ss_pred EEEEEeCCCCceeecccEEeecccCCccccceEecCCE-E-EEEecCCCCceEEE
Confidence 6 3322332111 01122 2333468899999984 4 45554444444443
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.93 E-value=0.076 Score=51.22 Aligned_cols=127 Identities=11% Similarity=0.090 Sum_probs=81.6
Q ss_pred eeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
+....++...-....-+.-|.-++.-++-+....+.|||...+.....-.-...+.|.++.|....+++.+++.+....|
T Consensus 19 w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 19 WLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred EEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEE
Confidence 33334444434445555555555555555555689999998877544432245778999999876689999999999999
Q ss_pred EEEecc-----cC----CeeeeEEeecCC-CceEEEEEcCCCCcEEEEEcCCCcEEEEeC
Q 011160 131 RHAQIL-----ER----GGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (492)
Q Consensus 131 ~iw~~~-----~~----~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~ 180 (492)
.++--. .. ..+....+..|+ .+|.+..|.++| .+ ++|+ ...+.|+|-
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~L-vV~s-GNqlfv~dk 155 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TL-VVGS-GNQLFVFDK 155 (631)
T ss_pred EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eE-EEEe-CCEEEEECC
Confidence 888531 11 122333344555 789999999999 34 4433 346888764
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.77 E-value=0.0052 Score=36.39 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=29.3
Q ss_pred CceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
...|..++|+|...+||.+..+|.|.++++...
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 356999999999999999999999999999443
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.0072 Score=48.92 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=47.7
Q ss_pred CCCcEEEEeeccCeEEEEecCCCeeeEEEecCC-ceeEEEeecCCCCeEEEe--eCCCCEEEeccCCC
Q 011160 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTVLASS--GIESDIKILTPNAA 417 (492)
Q Consensus 353 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~ 417 (492)
.++.+.++++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|+++ |.|..++.|+++.-
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 455688899999999999999888887777776 445555555556666666 66677777777553
No 399
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.61 E-value=0.54 Score=46.95 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=75.7
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhccccc-ccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRAS-EDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
+.|+.+. |+.+.+||-....+............ .+...+++.......-.-.|..|.++|+|.+||..|..|.+.+ .
T Consensus 34 rNLl~~~-d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~-~ 111 (717)
T PF10168_consen 34 RNLLACR-DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVL-E 111 (717)
T ss_pred eeeEEEe-CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEE-E
Confidence 3455555 68999999886554322222211111 1111222222222223458999999999999999998774443 3
Q ss_pred CC----------CCce--e-eee-------ccCcCcceEEEEecCCC-CCceEEeecCCCcEEEEecccCC
Q 011160 90 WK----------TERV--K-LSF-------HSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 90 ~~----------~~~~--~-~~~-------~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~ 139 (492)
+. .|.. . .++ ...+...|..+.|+|.. ++..|++-..|+++++||+....
T Consensus 112 LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 112 LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 32 1111 1 111 12345589999999953 36788888899999999997544
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.60 E-value=0.46 Score=41.83 Aligned_cols=277 Identities=12% Similarity=0.069 Sum_probs=120.7
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc-Cc----CcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS-GH----NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
...+..|.|..+..-+++|.. +.| +....+-....... .- .-...++.|.. ...+++| ..+.| +...
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~-g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~---~~g~ivG-~~g~l-l~T~ 87 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAY-GTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG---NEGWIVG-EPGLL-LHTT 87 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETT-TEE--EEESSTTSS-EE-----S-----EEEEEEEET---TEEEEEE-ETTEE-EEES
T ss_pred CCceEEEEEecCCEEEEEecC-CEE--EEECCCCccccccccCCCccceeeEEEEEecC---CceEEEc-CCceE-EEec
Confidence 458899999866666666654 543 33333322111101 11 12466777753 3444444 44432 2222
Q ss_pred ccCCeeeeEEee-cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 136 LERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 136 ~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
..+..-....+. .-......+....++ ..++ ++..|.|+. ....++.=..+... ....+..+..+++
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l-~~~~G~iy~-T~DgG~tW~~~~~~---------~~gs~~~~~r~~d 155 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDG-SAEL-AGDRGAIYR-TTDGGKTWQAVVSE---------TSGSINDITRSSD 155 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETT-EEEE-EETT--EEE-ESSTTSSEEEEE-S-------------EEEEEE-TT
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEE-EcCCCcEEE-eCCCCCCeeEcccC---------CcceeEeEEECCC
Confidence 223222211111 112233344443333 2333 344454432 12223221111111 3346788888887
Q ss_pred CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCC
Q 011160 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~ 294 (492)
+.+++++.......-||.-..... + ........|..+.|.|++.+.+.+..+.|++=+......
T Consensus 156 -G~~vavs~~G~~~~s~~~G~~~w~-------------~--~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 156 -GRYVAVSSRGNFYSSWDPGQTTWQ-------------P--HNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S-EEEEETTSSEEEEE-TT-SS-E-------------E--EE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEE
T ss_pred -CcEEEEECcccEEEEecCCCccce-------------E--EccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcc
Confidence 678888776666667876432110 0 011124689999999999887777677777766211100
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
.. .+.. .........+..++| .+++...|+|+ .|.+ +.....
T Consensus 220 ~w---------------------------------~~~~--~~~~~~~~~~ld~a~-~~~~~~wa~gg-~G~l-~~S~Dg 261 (302)
T PF14870_consen 220 TW---------------------------------SEPI--IPIKTNGYGILDLAY-RPPNEIWAVGG-SGTL-LVSTDG 261 (302)
T ss_dssp EE------------------------------------B---TTSS--S-EEEEEE-SSSS-EEEEES-TT-E-EEESST
T ss_pred cc---------------------------------cccc--CCcccCceeeEEEEe-cCCCCEEEEeC-CccE-EEeCCC
Confidence 00 0000 111111222788998 88877777666 4443 334455
Q ss_pred CeeeEEEec---CCceeEEEeecCCCCeEEEeeCCCCEEEe
Q 011160 375 GELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (492)
Q Consensus 375 ~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (492)
|+.-...+. -....+.+.|.+..+-+|.| .+|.|.-|
T Consensus 262 GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 262 GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 655444432 23457888887665555544 67877655
No 401
>PRK10115 protease 2; Provisional
Probab=96.56 E-value=1 Score=45.35 Aligned_cols=114 Identities=11% Similarity=0.007 Sum_probs=64.2
Q ss_pred ceEEEEEEcCCCCEEEEecC-----CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC------CcE
Q 011160 62 GCVNTVSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQV 130 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v 130 (492)
-.+..+.++|||++|+.+.. ...|++-|+.++..+.....+ . -..++|.+ +++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~--D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWAN--DSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence 45777899999998886532 346888999888644333222 1 15699998 88766654332 357
Q ss_pred EEEecccCCeeeeEEeecCCCceE-EEEEcCCCCcEEEEEc--CCCcEEEEeC
Q 011160 131 RHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCG--EDGLVQHFDL 180 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~--~dg~i~iwd~ 180 (492)
..+++.++.......+........ .+..+.++..+++... .++.+.+++.
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 777777763222222332222222 2333436644443322 2346777774
No 402
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.43 Score=40.69 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=91.8
Q ss_pred cCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC
Q 011160 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (492)
Q Consensus 103 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (492)
..+-+..+.++ +++.+.+..+.-++|.|+.+........+....+--.++..+ | +++..+..+.-+.+.|+.+
T Consensus 85 ~~~l~~Dv~vs----e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVS----EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEec----ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCC
Confidence 34456677774 567777777788999999887654432222222334455554 4 4667777666677889887
Q ss_pred CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCc-c
Q 011160 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-Q 261 (492)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 261 (492)
............ ....-..++.+ |++...+..|+-+.+.|+..... +..+..-. .
T Consensus 158 pssP~lagrya~-------~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~s--------------Pvli~~~n~g 213 (370)
T COG5276 158 PSSPQLAGRYAL-------PGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHS--------------PVLIGSYNTG 213 (370)
T ss_pred CCCceeeeeecc-------CCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCC--------------CeEEEEEecC
Confidence 654433221111 11122345555 56777778899999999976431 11111111 1
Q ss_pred cceEEEEEcCCCCeeEeecCCcEEEEecCCCC
Q 011160 262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (492)
Q Consensus 262 ~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~ 293 (492)
..+.++..+++..+++.... .+.+-|..+..
T Consensus 214 ~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~s 244 (370)
T COG5276 214 PGTYSVSVSDNRAYLVVYDE-GVLIVDVSGPS 244 (370)
T ss_pred CceEEEEecCCeeEEEEccc-ceEEEecCCCC
Confidence 25777777777666655443 35555555543
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.50 E-value=0.9 Score=45.87 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=69.4
Q ss_pred CCceEEeecCCCcEEEEecccCCeeeeEEeecCCC------ceEEEEEcCC---------------CCcEEEEEcCCCcE
Q 011160 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG------RAHKLAIEPG---------------SPHVFYTCGEDGLV 175 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~------~v~~i~~~~~---------------~~~~l~~~~~dg~i 175 (492)
-+..|+.++.++.|.-.|..+++.+-......... ....+++... ....++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 35567777778888888888877665432221110 0122333211 11367788899999
Q ss_pred EEEeCCCCCccceeecCCCCCCC-cce-eecceEEEEEcCC-CCceEEEecC----------CCeEEEEecccccccCCC
Q 011160 176 QHFDLRTGAATELFTCRPIDDRR-NYM-TVVNLNAIAIDPR-NANLFAVAGS----------DEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~p~-~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~ 242 (492)
.-.|.++++....+......... +.. .......+.-.|- -+..+++|+. +|.|+-+|.+++++.-..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999988665421110000 000 0000000111110 0235555542 688999999999877655
Q ss_pred CCC
Q 011160 243 DFG 245 (492)
Q Consensus 243 ~~~ 245 (492)
..+
T Consensus 353 ~~g 355 (764)
T TIGR03074 353 DPG 355 (764)
T ss_pred ecC
Confidence 443
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.43 E-value=1.2 Score=44.92 Aligned_cols=215 Identities=13% Similarity=0.059 Sum_probs=114.3
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEc----------------CCC
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN----------------TDG 73 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------~~~ 73 (492)
+..+.+++.++.|.-.|..+|+.+-+.......... ..| .....+++. .++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~------------~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~ 260 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG------------RQH-QTCRGVSYYDAPAAAAGPAAPAAPADCA 260 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc------------ccc-ccccceEEecCCcccccccccccccccC
Confidence 455677777889999999999877431111000000 000 000111111 134
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCcCcce-------------EEEEecCCCCCceEEeecC----------CCcE
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNV-------------FQAKIMPFTDDRSIVTCAA----------DGQV 130 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~~~~l~~~~~----------dg~v 130 (492)
..|+.++.|+.+.-.|.++|+.+..+- ..+.| ..+.-.|.-.+..+++|+. +|.|
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 578888899999999999999887662 22211 0111112112345555532 5889
Q ss_pred EEEecccCCeeeeEEeec---------------CCCce-EEEEEcCCCCcEEEEEc------------------CCCcEE
Q 011160 131 RHAQILERGGVETKLLGK---------------HQGRA-HKLAIEPGSPHVFYTCG------------------EDGLVQ 176 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~---------------~~~~v-~~i~~~~~~~~~l~~~~------------------~dg~i~ 176 (492)
+-+|..+++..-...... -...+ ..+++.+... +++.+. ..+.|.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEE
Confidence 999999988765422110 00011 2234444432 223211 235677
Q ss_pred EEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC---ceEEEecCCCeEEEEecccccccCC
Q 011160 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
-.|.++++..-.++.......... ......-+.+...++ ..++.++++|.+.++|.++++.+..
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D-~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMD-VPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEeCCCCceEEEecccCCcccccc-ccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 788888888776654221111110 011112222322123 3788999999999999999887654
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.017 Score=57.38 Aligned_cols=70 Identities=16% Similarity=0.288 Sum_probs=55.5
Q ss_pred eeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCcee---EEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV---NCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 344 ~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
.|++++| +.+|++++.|-.+|.|.+||+..++.++.+..|..+. ..+.+..++..+.++..-|. +|.+.-
T Consensus 132 ~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 132 PVTSVAF-NQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred cceeeEe-cCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 4899999 9999999999999999999999999998887666543 34445556667888877775 676643
No 406
>PHA03098 kelch-like protein; Provisional
Probab=96.33 E-value=0.3 Score=47.78 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=74.7
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC------CcEEEEecccCCe
Q 011160 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGG 140 (492)
Q Consensus 72 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iw~~~~~~~ 140 (492)
++.+++.||.+ ..+..||..++.-...-...+...-.+++.. ++..++.|+.. ..+..||..+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV---NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE---CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 57777888765 3467788776543211100111111122222 66777777732 3578888877655
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC--------cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--------LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (492)
.....+...... .+++.. ++ .+++.|+.++ .+.+||..+.+....-.... .......+.+
T Consensus 419 ~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--------~r~~~~~~~~- 486 (534)
T PHA03098 419 SKGSPLPISHYG-GCAIYH-DG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF--------PRINASLCIF- 486 (534)
T ss_pred eecCCCCccccC-ceEEEE-CC-EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc--------ccccceEEEE-
Confidence 432212111111 122222 34 5667776432 38889988876543221110 0001122223
Q ss_pred CCCCceEEEecCC-----CeEEEEecccccc
Q 011160 213 PRNANLFAVAGSD-----EYTRLYDIRKYKW 238 (492)
Q Consensus 213 p~~~~~l~~~~~d-----g~v~i~d~~~~~~ 238 (492)
+ +.+++.|+.+ ..+.+||..+.+.
T Consensus 487 -~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 -N-NKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred -C-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 2 5677777654 4678888877653
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.21 E-value=0.71 Score=39.85 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=85.1
Q ss_pred eEEEEEEcCCCCEEEEec---CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe-cccC
Q 011160 63 CVNTVSFNTDGDILISGS---DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ-ILER 138 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~-~~~~ 138 (492)
.+.+.+++++++.+|... ....+.++. .+........+ ..+....|.+ ++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~--~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDP--DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccC--CCCEEEEEcCCCceEEEEecCCC
Confidence 688999999998877655 333455554 33333333223 3788889999 877666666666666664 2233
Q ss_pred CeeeeE-EeecCCCceEEEEEcCCCCcEEEEE--cCCCcEEEEeCCCCCcc--ceeecCCCCCCCcceeecceEEEEEcC
Q 011160 139 GGVETK-LLGKHQGRAHKLAIEPGSPHVFYTC--GEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 139 ~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
...... ....-...|+.+.++|||.++.+.. ..++.|.+--+.....- ..+... ... .......+..++|.+
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~-~~~--~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP-RRV--APPLLSDVTDVAWSD 175 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc-eEe--cccccCcceeeeecC
Confidence 222211 1111112899999999997655444 23466776654422211 111100 000 000234688999999
Q ss_pred CCCceEEEecCC
Q 011160 214 RNANLFAVAGSD 225 (492)
Q Consensus 214 ~~~~~l~~~~~d 225 (492)
+ ..+++.+...
T Consensus 176 ~-~~L~V~~~~~ 186 (253)
T PF10647_consen 176 D-STLVVLGRSA 186 (253)
T ss_pred C-CEEEEEeCCC
Confidence 8 4555554433
No 408
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.027 Score=56.11 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=70.4
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC
Q 011160 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (492)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 151 (492)
.+..++.|+..|.+-..|+...-.....-..-.++|++++|+. +|..++.|-.+|.|.+||+..+..... +..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k~l~~--i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAKILKV--ITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCcceee--eeecCC
Confidence 4567888888899988887643211111123456999999999 999999999999999999988776655 444444
Q ss_pred ceEEE---EEcCCCCcEEEEEcCCCcEEEEeC
Q 011160 152 RAHKL---AIEPGSPHVFYTCGEDGLVQHFDL 180 (492)
Q Consensus 152 ~v~~i---~~~~~~~~~l~~~~~dg~i~iwd~ 180 (492)
+.+.+ .+..++ ..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 44443 334444 36788877776 4543
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.11 Score=52.43 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=93.5
Q ss_pred ceEEEEecCCCCCceEEee--cCCCcEEEEecccCCeee---eEEeecC------CCceEEEEEcCCCCcEEEEEcCCCc
Q 011160 106 NVFQAKIMPFTDDRSIVTC--AADGQVRHAQILERGGVE---TKLLGKH------QGRAHKLAIEPGSPHVFYTCGEDGL 174 (492)
Q Consensus 106 ~v~~~~~~~~~~~~~l~~~--~~dg~v~iw~~~~~~~~~---~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~dg~ 174 (492)
++..+...+ |+...++. +.+-.|..||+.+-.... ...+..| .....++.|+|.=+...+++..|+.
T Consensus 102 pi~~~v~~~--D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFH--DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cceEEEecc--CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 555566666 76554433 333478899987533211 2222222 2345678899876666788888999
Q ss_pred EEEEeCCCCCcc-ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCC
Q 011160 175 VQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (492)
Q Consensus 175 i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (492)
|++..+...... ..+. .....++++|+|. |+.++.|-..|++.-|-..-.... ...++
T Consensus 180 l~V~~~~~~~~~v~s~p-----------~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~leik~---------~ip~P 238 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-----------VTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLEIKS---------EIPEP 238 (1405)
T ss_pred hhhhhhhhhhhhhcccC-----------cccceeeEEeccc-cceeeEecCCCeEEEeecccceee---------cccCC
Confidence 988776543221 1111 3346899999998 789999999999998876432111 11112
Q ss_pred CCcCCCcccceEEEEEcCCCCeeEeec
Q 011160 254 PNLIGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
... ....|.+|.|-....++++.+
T Consensus 239 p~~---e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 239 PVE---ENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CcC---CCcceeEEEEecceeEEEEec
Confidence 211 257899999999888887765
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.03 E-value=0.45 Score=43.92 Aligned_cols=161 Identities=11% Similarity=0.117 Sum_probs=95.1
Q ss_pred cCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC-----CCCeeEeecCCcEEE
Q 011160 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-----QSELLVSYNDEFIYL 286 (492)
Q Consensus 212 ~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~~~i~~ 286 (492)
++++...+++|+..|.++||+......... ...+...-..+|..+..-+ +...||+-.-.++.+
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-----------~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-----------DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-----------cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 344567899999999999999955432111 0011112234666665442 335777777888888
Q ss_pred EecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC----C-CcEEEEe
Q 011160 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP----K-CEYVVSG 361 (492)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~----~-g~~l~sg 361 (492)
|.+........ ......+..+..|.-......+++ .| . ..+|+.=
T Consensus 102 Y~v~~~~g~~~-----------------------------~g~~~~L~~~yeh~l~~~a~nm~~-G~Fgg~~~~~~IcVQ 151 (418)
T PF14727_consen 102 YSVSLVDGTVE-----------------------------HGNQYQLELIYEHSLQRTAYNMCC-GPFGGVKGRDFICVQ 151 (418)
T ss_pred EEEEecCCCcc-----------------------------cCcEEEEEEEEEEecccceeEEEE-EECCCCCCceEEEEE
Confidence 88843211000 000112233334443323344443 22 2 3578889
Q ss_pred eccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
+.||.+.+|+-+.....+.+.. ---...++|.+....|++++.+..|..|..
T Consensus 152 S~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 152 SMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 9999999999866555455543 223455678888888888888888888765
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=96.03 E-value=0.97 Score=43.39 Aligned_cols=146 Identities=10% Similarity=-0.040 Sum_probs=72.1
Q ss_pred CCCEEEEecCC--CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC---cEEEEecccCCeeeeEEe
Q 011160 72 DGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKLL 146 (492)
Q Consensus 72 ~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~ 146 (492)
++.+.+.||.+ ..+..|+..++.-...-.......-.+++.. ++...+.|+.++ .+..||..+.........
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 57777888754 3577888765533211100111111122222 677778877653 467888876655432222
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC-
Q 011160 147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD- 225 (492)
Q Consensus 147 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d- 225 (492)
....... +++ .-++ .+.+.| |.+.+||.++.+....-.... .......+.+ ++.+.+.|+.+
T Consensus 395 ~~~r~~~-~~~-~~~~-~IYv~G---G~~e~ydp~~~~W~~~~~m~~--------~r~~~~~~v~---~~~IYviGG~~~ 457 (480)
T PHA02790 395 YYPHYKS-CAL-VFGR-RLFLVG---RNAEFYCESSNTWTLIDDPIY--------PRDNPELIIV---DNKLLLIGGFYR 457 (480)
T ss_pred CCccccc-eEE-EECC-EEEEEC---CceEEecCCCCcEeEcCCCCC--------CccccEEEEE---CCEEEEECCcCC
Confidence 2111111 222 2234 455555 357889988776543221110 0111222233 25677777754
Q ss_pred ----CeEEEEeccccc
Q 011160 226 ----EYTRLYDIRKYK 237 (492)
Q Consensus 226 ----g~v~i~d~~~~~ 237 (492)
..+..||..+.+
T Consensus 458 ~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 458 GSYIDTIEVYNNRTYS 473 (480)
T ss_pred CcccceEEEEECCCCe
Confidence 356677776654
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.01 E-value=0.7 Score=38.02 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=40.9
Q ss_pred eEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecC
Q 011160 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (492)
Q Consensus 347 ~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (492)
.++. +.+|.+.++.-..|+|...|..+|+.+.+++-....|+++||--
T Consensus 216 Gm~I-D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTI-DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceE-ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3444 66888888888889999999999999999988888899999963
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.01 E-value=1.4 Score=41.61 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=75.7
Q ss_pred ccceEEEEEEcCC----CCEEEEecCCCeEEEEECCC-----CceeeeeccCc--C--cceEEEEecCCCCCceEEeecC
Q 011160 60 HRGCVNTVSFNTD----GDILISGSDDRRVILWDWKT-----ERVKLSFHSGH--N--DNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 60 h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~--~--~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
.-..|..+.|.|- -..|+.....+.|.||.+.. ++.+....... . ---..+.|+| ....|++-..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~ 132 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTA 132 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEec
Confidence 3456899999984 22444445668999998752 22211110011 1 1124578999 7777776555
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (492)
...-.+.+++.........+ ...+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus 133 ~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 44445667665544333334 456789999999999877777777667789985544
No 414
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.86 E-value=0.85 Score=44.85 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=93.2
Q ss_pred CCEEEEecCCCeEEEEECCCCceee------eec---------------cCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 73 GDILISGSDDRRVILWDWKTERVKL------SFH---------------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~------~~~---------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
..+|+++. .+.|.||+...-.... .+. ......|+.|...-+.+...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66677765 5789999976422211 110 0011246666665555778899999999999
Q ss_pred EEeccc-------C----Ce------eeeEEeecCCCceEEEEEc--CCCCcEEEEEcCCCcEEEEeCCCCCccceeecC
Q 011160 132 HAQILE-------R----GG------VETKLLGKHQGRAHKLAIE--PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (492)
Q Consensus 132 iw~~~~-------~----~~------~~~~~~~~~~~~v~~i~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 192 (492)
+|.+.. . .. +.......-...+++++++ ... ++||+++....|.||-+......... .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~--~ 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTVFAFALVDERFYH--V 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEEEEEecccccccc--c
Confidence 997632 0 00 0001112234578899998 655 68888888888888876543111000 0
Q ss_pred CCCCCCcceeecceEEEEEcCCC----Cc-eEEEecCCCeEEEEec
Q 011160 193 PIDDRRNYMTVVNLNAIAIDPRN----AN-LFAVAGSDEYTRLYDI 233 (492)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~----~~-~l~~~~~dg~v~i~d~ 233 (492)
..+.+...|.+++|-++. |. .+++++-.|.+.+|++
T Consensus 205 -----~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 -----PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -----cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 011144478899997753 22 7888999999999888
No 415
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.85 E-value=0.62 Score=41.02 Aligned_cols=198 Identities=17% Similarity=0.160 Sum_probs=97.5
Q ss_pred cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC-----ceEEEecCCCeEEEEecccccccCCC---CCC
Q 011160 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA-----NLFAVAGSDEYTRLYDIRKYKWDGST---DFG 245 (492)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-----~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~ 245 (492)
.|.+||+.+++.+..+..+..... ..+.++.+.+....+ ...++=+..+.|.++|+.+++.-... ...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~----~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~ 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP----PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-----TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT
T ss_pred EEEEEECCCCcEEEEEECChHHcc----cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce
Confidence 577889999988887776544332 344678888876422 23444455578999999887532211 000
Q ss_pred CCc-cccCCCCcCCCcccceEEEEEcC---CCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 246 QPA-DYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
.|. ..+......-.....+..++.+| +++.|.-..-....+|.+.+......
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~------------------------ 166 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP------------------------ 166 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST------------------------
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc------------------------
Confidence 010 00000000001123477777776 66677666533334444433211100
Q ss_pred CCCCCCc-cccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC---eeeEEEe-cC--CceeEEEeec
Q 011160 322 PSTANTD-VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVIE-AD--RHVVNCIEPH 394 (492)
Q Consensus 322 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~---~~~~~~~-~h--~~~v~~~~~s 394 (492)
...... .....+.+ +.... ....+++ +++|.++++--..+.|..|+.... +....+. .. -..+..+.+.
T Consensus 167 -~~~~~~~~~~~v~~l-G~k~~-~s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~ 242 (287)
T PF03022_consen 167 -SLSDAQALASQVQDL-GDKGS-QSDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID 242 (287)
T ss_dssp -T--HHH-HHHT-EEE-EE----SECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred -cccccccccccceec-cccCC-CCceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence 000000 01111222 22111 1355666 899999999999999999998652 1122222 11 2457888888
Q ss_pred C--CCCeEEEe
Q 011160 395 P--HSTVLASS 403 (492)
Q Consensus 395 ~--~~~~l~s~ 403 (492)
+ +|.+.+.+
T Consensus 243 ~~~~g~L~v~s 253 (287)
T PF03022_consen 243 PEGDGYLWVLS 253 (287)
T ss_dssp T--TS-EEEEE
T ss_pred cccCceEEEEE
Confidence 8 66655544
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.66 E-value=1.8 Score=39.97 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=54.4
Q ss_pred eEEEEEEcCCCCEEEEec-----------CCC-eEEEEECCC--Cce--eeeeccCcCcceEEEEecCCCCCceEEeecC
Q 011160 63 CVNTVSFNTDGDILISGS-----------DDR-RVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~-----------~d~-~i~iwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
....|+|.++|+++++-. ..+ .|.+++-.+ |.. ...+ .........+++.+ ++ |+++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~--~G--lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAV--GG--VYVATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEec--CC--EEEeCC
Confidence 456889999999877642 223 677776433 221 2233 22334568899988 77 444444
Q ss_pred CCcEEEEecccC-----C-eeeeEEeec----CCCceEEEEEcCCCCcEEEEEc
Q 011160 127 DGQVRHAQILER-----G-GVETKLLGK----HQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 127 dg~v~iw~~~~~-----~-~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
....++.+.... + .+....+.. +......++|.|+|. +.++.+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 433333344321 1 111111221 234577899999994 544433
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.25 Score=49.96 Aligned_cols=152 Identities=10% Similarity=0.001 Sum_probs=88.9
Q ss_pred ceEEEEEcCCCCceEEE--ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC--CeeEeec
Q 011160 205 NLNAIAIDPRNANLFAV--AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYN 280 (492)
Q Consensus 205 ~v~~~~~~p~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~ 280 (492)
.+..+...+| ....++ .+.+-.|..||+++........ ...+|...+.........++.|+|.- ..+++..
T Consensus 102 pi~~~v~~~D-~t~s~v~~tsng~~v~~fD~~~fs~s~~~~----~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~ 176 (1405)
T KOG3630|consen 102 PIVIFVCFHD-ATDSVVVSTSNGEAVYSFDLEEFSESRYET----TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS 176 (1405)
T ss_pred cceEEEeccC-CceEEEEEecCCceEEEEehHhhhhhhhhh----ccccccccchhccccccccccccCCccchhhhhcc
Confidence 4556666666 333333 3344478899998754322110 11112222222334556778888863 3444555
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE
Q 011160 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (492)
Q Consensus 281 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s 360 (492)
+..|++..+.... .....+.-.. .+++++| +|.|+.++.
T Consensus 177 dlsl~V~~~~~~~-------------------------------------~~v~s~p~t~---~~Tav~W-SprGKQl~i 215 (1405)
T KOG3630|consen 177 DLSLRVKSTKQLA-------------------------------------QNVTSFPVTN---SQTAVLW-SPRGKQLFI 215 (1405)
T ss_pred ccchhhhhhhhhh-------------------------------------hhhcccCccc---ceeeEEe-ccccceeeE
Confidence 6777777654321 1111111111 2789998 999999999
Q ss_pred eeccCeEEEEecCCCeeeEEEecC----CceeEEEeecCCCCeEEEe
Q 011160 361 GSDCGRIFIWKKKGGELIRVIEAD----RHVVNCIEPHPHSTVLASS 403 (492)
Q Consensus 361 g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~ 403 (492)
|...|++.-|.. +++....+.+. ...|.+|+|-....+|++-
T Consensus 216 G~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 216 GRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 999999998875 45544444332 3569999998877777654
No 418
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.58 Score=37.71 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=75.7
Q ss_pred cCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCce---EEE
Q 011160 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA---HKL 156 (492)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v---~~i 156 (492)
-.+|.-..+|..+.+++.++ ...+.=+.++. ++..|+.+....+++.-|..+-.............+| +-+
T Consensus 108 w~egvaf~~d~~t~~~lg~~--~y~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNEL 181 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRF--SYEGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNEL 181 (262)
T ss_pred eccceeEEEChHHhhhhccc--ccCCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccce
Confidence 34677788888888777666 23444556655 6666777766667777776654433332222222222 333
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcc--eeecceEEEEEcCCCCceEEEe
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
.|- +| .+.+-.-.+..|...+.++|+....+........... .+..-.+.+++.|++++++++|
T Consensus 182 E~V-dG-~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 182 EWV-DG-ELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eee-cc-EEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 443 33 2444444455566667777776655544332211111 1233578899999866677765
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.59 E-value=0.53 Score=45.69 Aligned_cols=126 Identities=10% Similarity=0.109 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc--CCCCceEEEecCCCeE
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID--PRNANLFAVAGSDEYT 228 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~v 228 (492)
..++-+.-+.-+ +..++-+....+.|||.+.+........ .....|..+.|. |+ ++.+++.+..+.|
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f---------~~~~~I~dLDWtst~d-~qsiLaVGf~~~v 98 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF---------SEDDPIRDLDWTSTPD-GQSILAVGFPHHV 98 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee---------cCCCceeeceeeecCC-CCEEEEEEcCcEE
Confidence 344455555545 3444444556799999998874433322 134568888885 55 5667777778889
Q ss_pred EEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCC
Q 011160 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
.+|.-..........--.+++.. .+......+|....|.++|.+ ++++++.+.+++-.-
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i---~i~~~T~h~Igds~Wl~~G~L-vV~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKI---DISSHTPHPIGDSIWLKDGTL-VVGSGNQLFVFDKWL 157 (631)
T ss_pred EEEEccchhhhcCCcccceeEEE---EeecCCCCCccceeEecCCeE-EEEeCCEEEEECCCc
Confidence 88865432221110000011111 111122357888999999854 455567788887543
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.53 E-value=1.1 Score=36.86 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=92.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCC--ceEEeecCCCcEEEEecccCCeeeeEEee---
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD--RSIVTCAADGQVRHAQILERGGVETKLLG--- 147 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~~~~~~~--- 147 (492)
+.++..-=..|.|.-||..+......-..+. +..++.+ |..++ .+.+.++..-.|--||......+....+.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 3445444455667779887655433322221 1233333 21122 23334444334445664332222211111
Q ss_pred --cCCCceEEEEEcCCCCcEEEEEcC----------CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 148 --KHQGRAHKLAIEPGSPHVFYTCGE----------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 148 --~~~~~v~~i~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
....+.+.-..+|+|. + +.|.. .|.++.|-... .+..+.. .-.--+.++|+.+.
T Consensus 104 ~d~kknR~NDgkvdP~Gr-y-y~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~----------~v~IsNgl~Wd~d~ 169 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGR-Y-YGGTMADFGDDLEPIGGELYSWLAGH--QVELIWN----------CVGISNGLAWDSDA 169 (310)
T ss_pred chHHhcccccCccCCCCc-e-eeeeeccccccccccccEEEEeccCC--Cceeeeh----------hccCCccccccccC
Confidence 1134556777889994 4 44432 24444443321 1111110 11123678898875
Q ss_pred CceEEEecCCCeEEEEe--cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 216 ANLFAVAGSDEYTRLYD--IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
..+.++-+.+-.|.-|| ..++.......+ +.............-.++..-+|.+.+++- .++|+.+|..++
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i------~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI------FDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG 243 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCccee------EEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC
Confidence 55666677777887777 666654332111 000000000111112344455676655544 568999999886
Q ss_pred C
Q 011160 293 L 293 (492)
Q Consensus 293 ~ 293 (492)
+
T Consensus 244 K 244 (310)
T KOG4499|consen 244 K 244 (310)
T ss_pred c
Confidence 4
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.44 E-value=1.5 Score=37.82 Aligned_cols=113 Identities=14% Similarity=0.030 Sum_probs=63.8
Q ss_pred ceEEEEEcCCCCcEEEEEcCC--CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 229 (492)
.+.+.++++++..+.+....+ ..++++. .+....... ....+....|+++ +...+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-----------~g~~l~~PS~d~~-g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-----------TGGSLTRPSWDPD-GWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-----------cCCccccccccCC-CCEEEEEcCCCceE
Confidence 678999999996444444223 3455544 333322221 1125677899998 56666656566666
Q ss_pred EEe-cccccccCCCCCCCCccccCCCCcCCCcc-cceEEEEEcCCCCeeEeec----CCcEEEEecCC
Q 011160 230 LYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQ-VGITGLAFSDQSELLVSYN----DEFIYLFTQDM 291 (492)
Q Consensus 230 i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~----~~~i~~~d~~~ 291 (492)
++. ...++... ........ ..|..+.+||||..++... .+.|++--+..
T Consensus 91 ~~~~~~~g~~~~-------------~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 91 VVRDSASGTGEP-------------VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred EEEecCCCccee-------------EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 663 22322110 00011111 1899999999999877655 45677766543
No 422
>PHA03098 kelch-like protein; Provisional
Probab=95.29 E-value=1.6 Score=42.86 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=73.7
Q ss_pred CCCEEEEecCCC------eEEEEECCCCceeeeeccCc-CcceEEEEecCCCCCceEEeecCC-----CcEEEEecccCC
Q 011160 72 DGDILISGSDDR------RVILWDWKTERVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERG 139 (492)
Q Consensus 72 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~ 139 (492)
++.+++.||.++ .+..||..+.+.. ....-. ...-.+++. - ++..++.||.+ ..+..||..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~-~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV-F--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE-E--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 456677776542 4677887766542 211111 111112222 2 67777788765 347778877665
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
......+...... .+++. -++ ++++.||.. ..+..||+.+.+....-..+. ... .. +++..
T Consensus 370 W~~~~~lp~~r~~-~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~------~~-~~~~~- 436 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI--SHY------GG-CAIYH- 436 (534)
T ss_pred eeeCCCcCcCCcc-ceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc--ccc------Cc-eEEEE-
Confidence 4432212211111 12222 234 566777632 358889988776543221110 000 11 22222
Q ss_pred CCCceEEEecCC--------CeEEEEecccccc
Q 011160 214 RNANLFAVAGSD--------EYTRLYDIRKYKW 238 (492)
Q Consensus 214 ~~~~~l~~~~~d--------g~v~i~d~~~~~~ 238 (492)
++.+++.|+.. ..+.+||..+.+.
T Consensus 437 -~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 437 -DGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred -CCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 24667777643 2388889887654
No 423
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.21 E-value=2.5 Score=38.83 Aligned_cols=123 Identities=13% Similarity=0.234 Sum_probs=63.6
Q ss_pred EEEEEEcCCCCEEEEec--------------------CCCeEEEEECCCCceeeeeccCcCc-ceEEEEecCCCCCce-E
Q 011160 64 VNTVSFNTDGDILISGS--------------------DDRRVILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRS-I 121 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~-l 121 (492)
-+.+-|.|..+.++|.. ...++.+||+.+.+.++++--+..+ ....++|....+..+ +
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 44566677666666653 2467999999999998888544333 456778765223343 3
Q ss_pred EeecCCCcEEEEec-ccCCeeeeEEee--c-----------------CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC
Q 011160 122 VTCAADGQVRHAQI-LERGGVETKLLG--K-----------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (492)
Q Consensus 122 ~~~~~dg~v~iw~~-~~~~~~~~~~~~--~-----------------~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 181 (492)
+.+....+|..|-- ..+.......+. . -..-|+.|.+|.|...+.+++-.+|.|+.||+.
T Consensus 263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 33334455555543 333322111111 0 124579999999997666777889999999998
Q ss_pred CCCcc
Q 011160 182 TGAAT 186 (492)
Q Consensus 182 ~~~~~ 186 (492)
.....
T Consensus 343 DP~~P 347 (461)
T PF05694_consen 343 DPFNP 347 (461)
T ss_dssp STTS-
T ss_pred CCCCC
Confidence 75543
No 424
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.10 E-value=2.2 Score=37.66 Aligned_cols=192 Identities=13% Similarity=0.159 Sum_probs=88.7
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec--cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
...++.|..+ ..+++| ..+ +.+...+.|+.-..+. ..-......+.... ++..+++ +..|. ||....+..
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~--~~~~~l~-~~~G~--iy~T~DgG~ 134 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG--DGSAELA-GDRGA--IYRTTDGGK 134 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE--TTEEEEE-ETT----EEEESSTTS
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC--CCcEEEE-cCCCc--EEEeCCCCC
Confidence 4667778643 344444 445 4444444454322221 11223334444443 4444443 34454 455444443
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
.-..........+..+..+++| .+++++.....+.-|+.-.......-+. ....|..|.|.|+ +.+.+
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~----------~~~riq~~gf~~~-~~lw~ 202 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRN----------SSRRIQSMGFSPD-GNLWM 202 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE------------SSS-EEEEEE-TT-S-EEE
T ss_pred CeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccC----------ccceehhceecCC-CCEEE
Confidence 3333344555778899999999 4666665544455676543322222111 3347999999998 44444
Q ss_pred EecCCCeEEEEecc-cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEE
Q 011160 221 VAGSDEYTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (492)
Q Consensus 221 ~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~ 286 (492)
. ...|.|+.=+.. ....-.. +..........+..++|.+++...++++.+.+.+
T Consensus 203 ~-~~Gg~~~~s~~~~~~~~w~~-----------~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 203 L-ARGGQIQFSDDPDDGETWSE-----------PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp E-ETTTEEEEEE-TTEEEEE--------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred E-eCCcEEEEccCCCCcccccc-----------ccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 3 478888887721 1110000 0001111234589999999999999888886544
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.09 E-value=0.13 Score=29.44 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=26.7
Q ss_pred ceEEEEEEcCCC---CEEEEecCCCeEEEEECCCC
Q 011160 62 GCVNTVSFNTDG---DILISGSDDRRVILWDWKTE 93 (492)
Q Consensus 62 ~~v~~~~~s~~~---~~l~s~~~d~~i~iwd~~~~ 93 (492)
+.|.++.|+|.. .+|+.+-.-+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 426
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.04 E-value=4.5 Score=40.96 Aligned_cols=319 Identities=11% Similarity=0.093 Sum_probs=159.9
Q ss_pred CCceEeeccCcceEEEEee--ccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEE
Q 011160 9 NNKRARTSVDKALVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (492)
+..+|.++..||.+.-+.+ .+|++... +.-.--..++.--.|+..++.-+.+..|+-..
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~-------------------Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v 654 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINTGQLSDR-------------------KKVTLGTQPISLRTFSSKSRTAVFALSDRPTV 654 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEcccceEccc-------------------cccccCCCCcEEEEEeeCCceEEEEeCCCCEE
Confidence 4667888888998886654 44444321 11111245565556655443333333455555
Q ss_pred EEECCCCceeeeeccCcCcceEEEE-ecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcE
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAK-IMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 165 (492)
+|.- +++.+..-.. -..+..++ |+...-...|+++. .+.+++..+..-+....+.+.-+ .....+++.+.. .+
T Consensus 655 iY~~-n~kLv~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~s-l~ 728 (1096)
T KOG1897|consen 655 IYSS-NGKLVYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESS-LT 728 (1096)
T ss_pred EEec-CCcEEEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccc-eE
Confidence 6653 3444333211 11222222 32211234455554 35677777665444333333322 344566776633 33
Q ss_pred EEEEcCC--------------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec--------
Q 011160 166 FYTCGED--------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------- 223 (492)
Q Consensus 166 l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------- 223 (492)
+.+.+.. ..++++|-++-+.+...+... ......+.++.|..+.+.++++|.
T Consensus 729 ~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~------~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ 802 (1096)
T KOG1897|consen 729 FGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER------NETALSIISCKFTDDPNTYYVVGTGLVYPDEN 802 (1096)
T ss_pred EEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc------cceeeeeeeeeecCCCceEEEEEEEeeccCCC
Confidence 3333221 135566655544433222211 112334666678877556777765
Q ss_pred --CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCC
Q 011160 224 --SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSS 301 (492)
Q Consensus 224 --~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~ 301 (492)
..|.|.+|.+...+.... .+ ...-.+.+.++.. -+|++|| +=+..|++|+..+.
T Consensus 803 ep~~GRIivfe~~e~~~L~~------------v~-e~~v~Gav~aL~~-fngkllA-~In~~vrLye~t~~--------- 858 (1096)
T KOG1897|consen 803 EPVNGRIIVFEFEELNSLEL------------VA-ETVVKGAVYALVE-FNGKLLA-GINQSVRLYEWTTE--------- 858 (1096)
T ss_pred CcccceEEEEEEecCCceee------------ee-eeeeccceeehhh-hCCeEEE-ecCcEEEEEEcccc---------
Confidence 246677777665221110 00 0000122322221 1455554 44567888887763
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC--CCeeeE
Q 011160 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK--GGELIR 379 (492)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~--~~~~~~ 379 (492)
+.++.-..+... +..+.. .-.|..++.|.--+.|.+.... .|....
T Consensus 859 -----------------------------~eLr~e~~~~~~--~~aL~l-~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 859 -----------------------------RELRIECNISNP--IIALDL-QVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred -----------------------------ceehhhhcccCC--eEEEEE-EecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 233333444454 445554 6678999999888877765543 333433
Q ss_pred EE-ecCCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 380 VI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 380 ~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
.- ..+....+++.+-.+..++ -+..+|.+.+-..+
T Consensus 907 vArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKD 942 (1096)
T ss_pred eehhhCccceeeEEEecCceEE-eecccccEEEEEec
Confidence 22 2356678888876555444 45567777766554
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.00 E-value=0.11 Score=29.84 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCC--ceEEEecCCCeEEEEeccc
Q 011160 205 NLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 205 ~v~~~~~~p~~~--~~l~~~~~dg~v~i~d~~~ 235 (492)
.+.++.|+|..+ .+|+.+-..|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999998755 6888888899999999995
No 428
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.89 E-value=5.2 Score=40.88 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=49.0
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE----ec---------------CCceeEEEeecCCCCeEEEeeC
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI----EA---------------DRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~----~~---------------h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
|.++.. ..-+.+++..-.||+|.++|..+.+.+... .. +...+..++|||.+..++.-..
T Consensus 262 V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 262 VVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred EEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 777776 666789999999999999998877555433 10 0113446889999999999999
Q ss_pred CCCEE
Q 011160 406 ESDIK 410 (492)
Q Consensus 406 dg~i~ 410 (492)
+|.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 99866
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.85 E-value=1.2 Score=43.81 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=75.8
Q ss_pred eEEEEEEcC--CCCEEEEecCCCeEEEEECCC-------C----ce-------eeeeccCcCcceEEEEec--CCCCCce
Q 011160 63 CVNTVSFNT--DGDILISGSDDRRVILWDWKT-------E----RV-------KLSFHSGHNDNVFQAKIM--PFTDDRS 120 (492)
Q Consensus 63 ~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~-------~----~~-------~~~~~~~~~~~v~~~~~~--~~~~~~~ 120 (492)
.|+.|.... ....|+.+..||.|.+|.+++ . .. ...+...-...+++++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~--~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK--KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC--cceE
Confidence 455555443 457899999999999997631 0 00 001111234478999998 6 7788
Q ss_pred EEeecCCCcEEEEecccCC-eeeeEEeecCCCceEEEEEcCCC--Cc---EEEEEcCCCcEEEEeC
Q 011160 121 IVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGS--PH---VFYTCGEDGLVQHFDL 180 (492)
Q Consensus 121 l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~--~~---~l~~~~~dg~i~iwd~ 180 (492)
||+++....|.||-+.... ......-..+...|-+|+|.++. +. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888888765521 11111112366789999998754 22 6778889999999887
No 430
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.81 E-value=3 Score=37.76 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC----CCEEEEe
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GDILISG 79 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~ 79 (492)
+.+.|+++++++- ..|.|++++ ..|.... .+..+. ............++++|+ +.+.++.
T Consensus 7 ~a~~pdG~l~v~e-~~G~i~~~~-~~g~~~~------------~v~~~~--~v~~~~~~gllgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 7 MAFLPDGRLLVAE-RSGRIWVVD-KDGSLKT------------PVADLP--EVFADGERGLLGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp EEEETTSCEEEEE-TTTEEEEEE-TTTEECE------------EEEE-T--TTBTSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred EEEeCCCcEEEEe-CCceEEEEe-CCCcCcc------------eecccc--cccccccCCcccceeccccCCCCEEEEEE
Confidence 3466888776664 499999999 4344310 000000 112334567889999994 3333333
Q ss_pred cCC--------CeEEEEECCCC-------ceeeee-cc--CcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 80 SDD--------RRVILWDWKTE-------RVKLSF-HS--GHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 80 ~~d--------~~i~iwd~~~~-------~~~~~~-~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
+.. ..|.-|.+..+ +.+... .. .....-..|.|.| ++.+.++.+..+.
T Consensus 71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp--DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP--DGKLYVSVGDGGN 136 (331)
T ss_dssp EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T--TSEEEEEEB-TTT
T ss_pred EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC--CCcEEEEeCCCCC
Confidence 311 23444544433 111111 11 1223456799999 9977777665554
No 431
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.66 E-value=2.7 Score=36.48 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=120.5
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-----CccceeecCCCCCCCcceeecceEEEEEcCCC-----------
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRN----------- 215 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----------- 215 (492)
.-+.|+++|.++ +-++....+...+||.... ............ +.......+.+.|+...
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~---~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP---PLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCC---CCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 347899999985 5577777789999998711 111112221110 00022345666666431
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCC-cccceEEEEEcC--CCCeeEeec--CCcEEEEecC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-EQVGITGLAFSD--QSELLVSYN--DEFIYLFTQD 290 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~--~~~~l~~~~--~~~i~~~d~~ 290 (492)
...++.++++|+|.-|...-...... . .....-.. .......+++-. .+.+|..+. .++|.+||-.
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~-------~--~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMT-------R--AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccccc-------c--cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 12467788999999998543221000 0 00000001 122234455553 356776666 6689999865
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
-.+....-.... ......-....++.-.....|+-..- .++++.=+.|..-|.|-+|
T Consensus 171 f~~~~~~g~F~D----------------------P~iPagyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~VdvF 227 (336)
T TIGR03118 171 FRPPPLPGSFID----------------------PALPAGYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNVF 227 (336)
T ss_pred cccccCCCCccC----------------------CCCCCCCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEEE
Confidence 432111000000 00000001111111112222332222 4555555556667899999
Q ss_pred ecCCCeeeEEEe--cCCceeEEEeecC------CCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 371 KKKGGELIRVIE--ADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 371 d~~~~~~~~~~~--~h~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
|+ .|++++++. +.-+..+.|+..| .+.+|+---.||+|..+|..+++..
T Consensus 228 d~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 228 TL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred cC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 98 888888884 2234567777755 3456666566999999999877643
No 432
>PRK13684 Ycf48-like protein; Provisional
Probab=94.62 E-value=3.4 Score=37.49 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=82.9
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEE-EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRL-YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
..+..+.+.|+ +.+++++ ..|.+.. ++-..... ..........++++.+.++++.++++..+
T Consensus 173 g~~~~i~~~~~-g~~v~~g-~~G~i~~s~~~gg~tW---------------~~~~~~~~~~l~~i~~~~~g~~~~vg~~G 235 (334)
T PRK13684 173 GVVRNLRRSPD-GKYVAVS-SRGNFYSTWEPGQTAW---------------TPHQRNSSRRLQSMGFQPDGNLWMLARGG 235 (334)
T ss_pred ceEEEEEECCC-CeEEEEe-CCceEEEEcCCCCCeE---------------EEeeCCCcccceeeeEcCCCCEEEEecCC
Confidence 35788999997 5555554 4454432 22111100 00111234678899999999988887777
Q ss_pred cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee
Q 011160 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
.+++=..+.+..-. .+. .........+..+.+ .|++.++++|
T Consensus 236 ~~~~~s~d~G~sW~-----------------------------------~~~-~~~~~~~~~l~~v~~-~~~~~~~~~G- 277 (334)
T PRK13684 236 QIRFNDPDDLESWS-----------------------------------KPI-IPEITNGYGYLDLAY-RTPGEIWAGG- 277 (334)
T ss_pred EEEEccCCCCCccc-----------------------------------ccc-CCccccccceeeEEE-cCCCCEEEEc-
Confidence 65432233221100 000 000001112667777 8888776655
Q ss_pred ccCeEEEEecCCCeeeEEEec---CCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 363 DCGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
.+|.|. .....|+.-..... -....+.+.|..+++.+++ +..|.|.-|+-.
T Consensus 278 ~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~~ 331 (334)
T PRK13684 278 GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVGS 331 (334)
T ss_pred CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecCC
Confidence 466554 34444544333322 2234777888777766664 467888887654
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.37 E-value=4.4 Score=37.77 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 354 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
...|+|.|+..|.|++||.-.-+....+++-...|..+..+.+|+++++.+. ..+.+-++.-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 3459999999999999997554444556777778999999999998777664 5666666643
No 434
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.23 E-value=4.5 Score=37.33 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=38.6
Q ss_pred cceEEEEecCCCCCceEEeec-----------CCC-cEEEEecccC--CeeeeEEeecCCCceEEEEEcCCCCcEEEEEc
Q 011160 105 DNVFQAKIMPFTDDRSIVTCA-----------ADG-QVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~-----------~dg-~v~iw~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
.....|+|.+ +|+++++-. ..+ .|.+++-..+ .......+...-...+.|++.+++ +++ +.
T Consensus 14 ~~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-AT 88 (367)
T ss_pred CCCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eC
Confidence 3456788888 888766642 123 6666654332 222222343334456889998887 444 44
Q ss_pred CCCcEEEEeCC
Q 011160 171 EDGLVQHFDLR 181 (492)
Q Consensus 171 ~dg~i~iwd~~ 181 (492)
.....++.|..
T Consensus 89 ~~~i~~~~d~~ 99 (367)
T TIGR02604 89 PPDILFLRDKD 99 (367)
T ss_pred CCeEEEEeCCC
Confidence 44333343543
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.06 E-value=0.38 Score=40.30 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=52.0
Q ss_pred CceEEEecCCCeEEEEecccccccCCC-CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGST-DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (492)
++++++.+.+|.+++||+.+++..... .+.+-.... . .........|..+.++.+|.-|++-+++..+.|+.+-+
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~-~-~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSS-P-VSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccc-c-cccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 568999999999999999998764432 110000000 0 00003567899999999999999999999999998763
No 436
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.04 E-value=3.4 Score=35.19 Aligned_cols=240 Identities=14% Similarity=0.108 Sum_probs=139.9
Q ss_pred cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC
Q 011160 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (492)
..-..++-.| +|..-+++...+.|--.|..+++.... --+.......|..-|++... ++-+.. -|.-.|.++.+
T Consensus 62 ~ap~dvapap--dG~VWft~qg~gaiGhLdP~tGev~~y--pLg~Ga~Phgiv~gpdg~~W-itd~~~-aI~R~dpkt~e 135 (353)
T COG4257 62 SAPFDVAPAP--DGAVWFTAQGTGAIGHLDPATGEVETY--PLGSGASPHGIVVGPDGSAW-ITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCccccccCC--CCceEEecCccccceecCCCCCceEEE--ecCCCCCCceEEECCCCCee-EecCcc-eeEEecCcccc
Confidence 3456677778 898888888888888888888765443 22344455678888888543 332222 45556665554
Q ss_pred ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC---------CCeEEEEecccccccCCCCCCCCccccCCCC
Q 011160 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (492)
.. .+..... ..........|.+. +++-+++.. .+.|++|+...+
T Consensus 136 vt-~f~lp~~------~a~~nlet~vfD~~-G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------- 188 (353)
T COG4257 136 VT-RFPLPLE------HADANLETAVFDPW-GNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------- 188 (353)
T ss_pred eE-Eeecccc------cCCCcccceeeCCC-ccEEEeeccccceecCcccCceeeeccCCC-------------------
Confidence 32 2222211 13446788899998 667676642 133555555432
Q ss_pred cCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCc
Q 011160 256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (492)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (492)
..-+.++..|+|...++.- .+.|-..|...+..... .
T Consensus 189 ------~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~------------------------------------p 226 (353)
T COG4257 189 ------GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVV------------------------------------P 226 (353)
T ss_pred ------CCCcceEECCCCcEEEEeccccceEEcccccCCccee------------------------------------c
Confidence 3456788899998766654 55677777665421110 0
Q ss_pred eeec-cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeee-EEEecCCceeEEEeecCCCCeEEEeeCCCCEEEe
Q 011160 335 VYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (492)
Q Consensus 335 ~~~~-~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (492)
.-.. +.. ...+-- +|.|+.-++-...+.++-+|-....-. ..|.+....-.++.....++.-.+--..|.|.-+
T Consensus 227 ~P~~~~~g---sRriws-dpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rf 302 (353)
T COG4257 227 QPNALKAG---SRRIWS-DPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRF 302 (353)
T ss_pred CCCccccc---cccccc-CccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeec
Confidence 0111 111 122322 777888888777788888886544321 2344444445666666666655544445677777
Q ss_pred ccCCCCCCccc
Q 011160 413 TPNAADRATLP 423 (492)
Q Consensus 413 ~~~~~~~~~~~ 423 (492)
|.++.....++
T Consensus 303 dpeta~ftv~p 313 (353)
T COG4257 303 DPETARFTVLP 313 (353)
T ss_pred CcccceEEEec
Confidence 77776554443
No 437
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.98 E-value=8.5 Score=39.58 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=58.1
Q ss_pred ecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCc--CCCcccceEEEEEcCCCCeeEeec
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL--IGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
..+...++|+|.....||+....|+..||++..........+.... ..+ ..+ -.........+.|.++-..|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~-~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR-NIS-GSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeecc-CCC-ccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 3456789999987789999999999999999322211111110000 000 011 011124556889999989999999
Q ss_pred CCcEEEEecCCCC
Q 011160 281 DEFIYLFTQDMGL 293 (492)
Q Consensus 281 ~~~i~~~d~~~~~ 293 (492)
...+.++|+.+..
T Consensus 223 r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 223 RSKLMLIDFESNW 235 (765)
T ss_pred CCceEEEECCCCC
Confidence 9999999998753
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.90 E-value=0.45 Score=39.88 Aligned_cols=70 Identities=10% Similarity=0.255 Sum_probs=53.0
Q ss_pred cCCCcEEEEeeccCeEEEEecCCCeeeEE-------Ee-------cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRV-------IE-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
..++++|++-+.+|.+++||+.+++.+.. +. .....|..+..+.+|.-|++-+ +|..+.|+.+=+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 56788999999999999999998876532 11 2445689999998888777765 578888888765
Q ss_pred CCCcc
Q 011160 418 DRATL 422 (492)
Q Consensus 418 ~~~~~ 422 (492)
.-..+
T Consensus 98 ~W~~v 102 (219)
T PF07569_consen 98 CWIRV 102 (219)
T ss_pred eeEEe
Confidence 44443
No 439
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.79 E-value=10 Score=39.93 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=13.6
Q ss_pred CCceeEEEeecCCCCeEEE
Q 011160 384 DRHVVNCIEPHPHSTVLAS 402 (492)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s 402 (492)
|-+.+.++|.+|||..++.
T Consensus 660 ~lnsp~alaVsPdg~v~IA 678 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIA 678 (1899)
T ss_pred ccCCcceEEECCCCcEEEe
Confidence 4456788888888876554
No 440
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=93.65 E-value=9.5 Score=39.05 Aligned_cols=209 Identities=16% Similarity=0.118 Sum_probs=105.0
Q ss_pred EEEecCCCeEEEEECCCCceeeeec-------cCcCcceEEEEecCCCCCceEEeecC---CCcEEEEeccc--C-----
Q 011160 76 LISGSDDRRVILWDWKTERVKLSFH-------SGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILE--R----- 138 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~--~----- 138 (492)
++.....|.+++|-.+......... ..-...|+..++.+..+|..++.++. .+.|++|.+.- +
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence 4445667999999763322222210 11334566666654336655555444 47888886531 1
Q ss_pred ---CeeeeEEee--------c-------------CCCceEEEEEcC------CCCcEEEEEcC----CCcEEEEeCCCCC
Q 011160 139 ---GGVETKLLG--------K-------------HQGRAHKLAIEP------GSPHVFYTCGE----DGLVQHFDLRTGA 184 (492)
Q Consensus 139 ---~~~~~~~~~--------~-------------~~~~v~~i~~~~------~~~~~l~~~~~----dg~i~iwd~~~~~ 184 (492)
+..+...+. . .-..++.+.|-+ ..+.++++.+. ...|.-|.++...
T Consensus 145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~ 224 (753)
T PF11635_consen 145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ 224 (753)
T ss_pred CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence 000111111 0 112556676655 23344544432 3468999987653
Q ss_pred cc-c-eeecCC---CCC-----------CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC----CC
Q 011160 185 AT-E-LFTCRP---IDD-----------RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST----DF 244 (492)
Q Consensus 185 ~~-~-~~~~~~---~~~-----------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----~~ 244 (492)
.. . .|.... ... .........|.++....- +..++....||+|.++|..+.+..... ..
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~ 303 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEP 303 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence 21 1 010000 000 000112345667766665 568888999999999999888665544 11
Q ss_pred CCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEE
Q 011160 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (492)
........-..+.-.....+..++|||.+..++... ++.+.
T Consensus 304 ~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 304 PNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 110000000000011122566789999988777666 55544
No 441
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=3.5 Score=37.76 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=74.9
Q ss_pred CcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee
Q 011160 259 DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (492)
Q Consensus 259 ~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (492)
...++|.++.||+|.+.||+-. +..|.+++....... .....+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~------------------------------------l~~~~~ 107 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ------------------------------------LEYTQE 107 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh------------------------------------hHHHHH
Confidence 3467999999999999999887 567999887432111 111111
Q ss_pred ccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC-CeeeEEEecCCceeEEEeecCCCCeEE-Eee-CCCCEEEecc
Q 011160 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLA-SSG-IESDIKILTP 414 (492)
Q Consensus 338 ~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~-~dg~i~iw~~ 414 (492)
.......|.+.+| +.+ .-+|..+..| +-+|-... .+.++..+.|...|+-..|.++-+.+. +.+ ..+++.=+-+
T Consensus 108 ck~k~~~IlGF~W-~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 108 CKTKNANILGFCW-TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred hccCcceeEEEEE-ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 1112223778887 544 5566555444 56665533 334556677888899999999887533 222 3444444555
Q ss_pred CCCCCCcc
Q 011160 415 NAADRATL 422 (492)
Q Consensus 415 ~~~~~~~~ 422 (492)
..+-...+
T Consensus 185 ~~~~v~kL 192 (657)
T KOG2377|consen 185 RAGTMSKL 192 (657)
T ss_pred eeceeeec
Confidence 54433333
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.41 E-value=3.8 Score=33.68 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=64.6
Q ss_pred EEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC---C---eEEEE---ecccc
Q 011160 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---E---YTRLY---DIRKY 236 (492)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g---~v~i~---d~~~~ 236 (492)
|+.+.....|.+|++.+.......... .-+.|..+.++.. |+++++--.+ . .+|+| .....
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~-GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEA-GDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccc-cceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 444456678999999844433332222 3457899999997 7888875322 2 55654 22210
Q ss_pred --cccCCCCCCCCccccC-------CCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCC
Q 011160 237 --KWDGSTDFGQPADYFC-------PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (492)
Q Consensus 237 --~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (492)
+.......+.+..... ...+.-+-...+.+++..|-..-|+.|+++++.+|.+...
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 1000000010100000 0001112245678889999766778888999999988753
No 443
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.33 E-value=5 Score=34.89 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=69.0
Q ss_pred ceEEEEecCCCCCceEEeecCCCcEEEEecc------cCCeeeeEEeec-----CCCceEEEEEcCCC-----------C
Q 011160 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQIL------ERGGVETKLLGK-----HQGRAHKLAIEPGS-----------P 163 (492)
Q Consensus 106 ~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~------~~~~~~~~~~~~-----~~~~v~~i~~~~~~-----------~ 163 (492)
.-+.|+++| .+.+-++....+...+||.. ....+. ..+.. .....+.+.|+... +
T Consensus 24 N~WGia~~p--~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~-vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 24 NAWGLSYRP--GGPFWVANTGTGTATLYVGNPDTQPLVQDPLV-VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ccceeEecC--CCCEEEecCCcceEEeecCCcccccCCccceE-EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 457899999 88888887778899999986 121211 12221 22456777777432 1
Q ss_pred cEEEEEcCCCcEEEEeCCCCCc---cceeecCCCCCCCcceeecceEEEEEcCC--CCceEEEecCCCeEEEEecccc
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
..++.+++||+|.-|...-... ...+...... ...-...+++... +..+.++--..++|.+||-.-.
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~------~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ------QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCC------CcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 2367788999999998543332 1111111000 1112234444432 2233444447788999986544
No 444
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.18 E-value=0.44 Score=43.16 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=96.0
Q ss_pred cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC----ceE-EEEEcCCCCcEEEEEcCCCcE
Q 011160 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG----RAH-KLAIEPGSPHVFYTCGEDGLV 175 (492)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~----~v~-~i~~~~~~~~~l~~~~~dg~i 175 (492)
..-...|..+-..| +++.|+.-+. .++.++++.+......+......+ .|+ .+..-..| .-++++..||-|
T Consensus 217 ~~~~~~v~qllL~P--dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~v 292 (733)
T COG4590 217 SVPFSDVSQLLLTP--DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG-FSLLVVHEDGLV 292 (733)
T ss_pred CCCccchHhhEECC--CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc-eeEEEEcCCCce
Confidence 44456778888899 9998887665 678888887654332221221111 222 12222233 567888889988
Q ss_pred EEE-eCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCC
Q 011160 176 QHF-DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (492)
Q Consensus 176 ~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (492)
.-| |.+.+.. ..+........ ...++..+.-.. +.+-+++-+.+|++.++.....+..
T Consensus 293 sQWFdvr~~~~-p~l~h~R~f~l----~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l--------------- 351 (733)
T COG4590 293 SQWFDVRRDGQ-PHLNHIRNFKL----APAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL--------------- 351 (733)
T ss_pred eeeeeeecCCC-Ccceeeecccc----Ccccceeecccc-ccceEEEEcCCCceeeeecccCcce---------------
Confidence 877 5443322 11110000000 111222222222 2456777788888887765443321
Q ss_pred CcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCC
Q 011160 255 NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (492)
Q Consensus 255 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~ 295 (492)
+...--..+.-+++||++.+|++-..++|+++.+++....
T Consensus 352 -L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 352 -LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred -ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCCCC
Confidence 1111123566789999999999999999999999876543
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=3 Score=38.16 Aligned_cols=120 Identities=16% Similarity=0.314 Sum_probs=76.4
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec---cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 136 (492)
-.|+|.++.||+|.+.||.--.++.|.+++....+...... +..+..|....|+. ..-+|.....| +-+|...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEEEEc
Confidence 46799999999999999999999999999985544433221 22344688889985 45566555444 5666654
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc-CCCcEEEEeCCCCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGA 184 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 184 (492)
..... .+....|...|+-..|.++..-.|++.+ ..+++.=+-++++.
T Consensus 141 pekrs-lRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 141 PEKRS-LRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhh-hhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 33221 1225567778888888888743334433 33344444444443
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.98 E-value=8.9 Score=38.70 Aligned_cols=94 Identities=7% Similarity=0.062 Sum_probs=55.9
Q ss_pred ccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCC-CCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc
Q 011160 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP-NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (492)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (492)
...|..+.++|+|++|+..+...|.|..+...... ..+........ +. ....-..+...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~--Cr------------------t~~v~~~~~~~ 143 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEIN--CR------------------TVPVDERFFTS 143 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCccee--EE------------------EEEechhhccC
Confidence 45799999999999999999887777776432100 00000000000 00 00000111112
Q ss_pred ccceeeeeEEeecCC---CcEEEEeeccCeEEEEecCCC
Q 011160 340 RNCVTVKGVNFFGPK---CEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 340 ~~~~~v~~~~~~s~~---g~~l~sg~~dg~i~iwd~~~~ 375 (492)
.....|..+.| +|. +..|+.-..|+++++||+...
T Consensus 144 ~~~~~i~qv~W-hP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRW-HPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEE-cCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 22335889998 876 478999999999999999654
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=10 Score=37.36 Aligned_cols=52 Identities=8% Similarity=0.168 Sum_probs=37.9
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecC-CceeEEEeecCCC
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHS 397 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~ 397 (492)
+..+.. ||+.++||-=...|.|.+-+....+....+... ..+.-.++|.-+.
T Consensus 219 ~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 219 VVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 667777 999999999999999999988877777666521 1233467775443
No 448
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=4.7 Score=42.35 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=57.7
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 141 (492)
.....++|+|...++|.|...|.|+++-...-+..........-.+..+.+-. ..........+..+.+|.......+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~--~~s~~~~l~~~~~~~~~~~~~~~~~ 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV--GISRNLVLSDDDSLHLWSIKIKTGV 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee--cccccceeecccceeeeccccccee
Confidence 35567899999999999999999999986543332221100111222222222 2223333444556666665433222
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (492)
. +...+++... +.+-..+.+ ..+.+++||..-.
T Consensus 114 ~------~~~~~~~~~~--~~~~~~~~g-~~~~~~~~~~~~~ 146 (993)
T KOG1983|consen 114 F------LKQEITSFVT--DPPPDWLIG-ENGLVKVSDVLRH 146 (993)
T ss_pred e------cCCcceeccC--CCCcchhcc-cCceeeEeeechh
Confidence 1 1223333322 222122334 7788888886543
No 449
>PRK10115 protease 2; Provisional
Probab=92.86 E-value=12 Score=37.92 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=94.1
Q ss_pred CCCCCCCceEeec-----cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE
Q 011160 4 ASNNNNNKRARTS-----VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (492)
Q Consensus 4 ~~~~~~~~~l~t~-----~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (492)
+..+|++++|+.+ ++.-.+++-|+.+|..+. ..+.+ . -..++|++|++.|+.
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--------------------~~i~~-~--~~~~~w~~D~~~~~y 188 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--------------------ELLDN-V--EPSFVWANDSWTFYY 188 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--------------------ccccC-c--ceEEEEeeCCCEEEE
Confidence 3467888887763 344567788888776441 11211 1 145899999886665
Q ss_pred ecCC------CeEEEEECCCC--ceeeeeccCcCcceE-EEEecCCCCCceEEeec---CCCcEEEEeccc--CCeeeeE
Q 011160 79 GSDD------RRVILWDWKTE--RVKLSFHSGHNDNVF-QAKIMPFTDDRSIVTCA---ADGQVRHAQILE--RGGVETK 144 (492)
Q Consensus 79 ~~~d------~~i~iwd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~---~dg~v~iw~~~~--~~~~~~~ 144 (492)
...+ ..|..+++.++ +....+ ........ .+..+. ++++++..+ .++.+.+++... +.....
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~-~e~~~~~~~~~~~s~--d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~- 264 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVY-EEKDDTFYVSLHKTT--SKHYVVIHLASATTSEVLLLDAELADAEPFVF- 264 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEE-eeCCCCEEEEEEEcC--CCCEEEEEEECCccccEEEEECcCCCCCceEE-
Confidence 5332 36788888877 322223 22222233 233343 666655433 345788888532 221111
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCC---CcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
+.........+. +..+ .+++....+ ..|...++.. ++....+.. . ....+..+.+.. ..+++
T Consensus 265 -~~~~~~~~~~~~-~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~--------~~~~i~~~~~~~--~~l~~ 330 (686)
T PRK10115 265 -LPRRKDHEYSLD-HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-R--------ENIMLEGFTLFT--DWLVV 330 (686)
T ss_pred -EECCCCCEEEEE-eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECC-C--------CCCEEEEEEEEC--CEEEE
Confidence 222222222222 3233 333333221 2343344442 211111110 0 122567777773 46777
Q ss_pred EecCCCeEEEEecc
Q 011160 221 VAGSDEYTRLYDIR 234 (492)
Q Consensus 221 ~~~~dg~v~i~d~~ 234 (492)
+...+|.-+++-+.
T Consensus 331 ~~~~~g~~~l~~~~ 344 (686)
T PRK10115 331 EERQRGLTSLRQIN 344 (686)
T ss_pred EEEeCCEEEEEEEc
Confidence 77778876666553
No 450
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.72 E-value=3.3 Score=38.53 Aligned_cols=61 Identities=13% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC
Q 011160 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 181 (492)
...++++|+..|-|++||--...... .+++....|..|..+.+|..+|++| ...+.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKt--alP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKT--ALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhh--cCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 56789999999999999964433322 3677788999999999997655555 3467777765
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.68 E-value=0.16 Score=50.04 Aligned_cols=69 Identities=7% Similarity=0.018 Sum_probs=45.4
Q ss_pred ecCCCcEEEEeeccCeEEEEecC-----CCeeeEEEecCCce--eEEEeecCCC---------CeEEEeeC-CCCEEEec
Q 011160 351 FGPKCEYVVSGSDCGRIFIWKKK-----GGELIRVIEADRHV--VNCIEPHPHS---------TVLASSGI-ESDIKILT 413 (492)
Q Consensus 351 ~s~~g~~l~sg~~dg~i~iwd~~-----~~~~~~~~~~h~~~--v~~~~~s~~~---------~~l~s~~~-dg~i~iw~ 413 (492)
.||||..+|.++.||.+++|.+. .-.++..++.|.+. |..+ ++... .++++++. ...+++|.
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEee
Confidence 49999999999999999888763 23455666777632 2222 32221 24555544 45799998
Q ss_pred cCCCCCC
Q 011160 414 PNAADRA 420 (492)
Q Consensus 414 ~~~~~~~ 420 (492)
-..-++.
T Consensus 322 ~a~w~Cl 328 (1283)
T KOG1916|consen 322 EAPWQCL 328 (1283)
T ss_pred ccchhhh
Confidence 8776665
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=4.5 Score=37.82 Aligned_cols=75 Identities=9% Similarity=-0.030 Sum_probs=41.3
Q ss_pred EeeccCcceEEEEeeccCcchhhhhhhccc-ccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 13 ARTSVDKALVDVWLRELGQLSTRNFALRRR-ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 13 l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
++.+..| .+..||.+..-+....+..... ++.-....++.......-.-.|..+..++.|..++-.|.+|.+.++
T Consensus 55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEE
Confidence 4555556 8999998755444222221000 1111111112111112234578888999999999999999865543
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.47 E-value=0.86 Score=26.06 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=28.1
Q ss_pred CCCcEEEEe-eccCeEEEEecCCCeeeEEEecCCceeEEEee
Q 011160 353 PKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (492)
Q Consensus 353 ~~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (492)
|++++|+++ ..++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 567766654 45789999999999988887753 33445554
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=92.43 E-value=8.2 Score=35.03 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=85.7
Q ss_pred CcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC
Q 011160 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (492)
Q Consensus 102 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 181 (492)
.....+.++.+.| ++.+++++. .|.+..- ...+..............++++.+.+++. +++ .+..|.+.+=...
T Consensus 170 ~~~g~~~~i~~~~--~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~-vg~~G~~~~~s~d 243 (334)
T PRK13684 170 DAAGVVRNLRRSP--DGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWM-LARGGQIRFNDPD 243 (334)
T ss_pred CCcceEEEEEECC--CCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCC-EEE-EecCCEEEEccCC
Confidence 3355788999998 776665554 4544321 11222111111223446789999999884 544 4556766532333
Q ss_pred CCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcc
Q 011160 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (492)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
.+..-.....+.. .....+..+.+.|+ +..++ ++.+|.+.. ....++.= ........-.
T Consensus 244 ~G~sW~~~~~~~~------~~~~~l~~v~~~~~-~~~~~-~G~~G~v~~-S~d~G~tW------------~~~~~~~~~~ 302 (334)
T PRK13684 244 DLESWSKPIIPEI------TNGYGYLDLAYRTP-GEIWA-GGGNGTLLV-SKDGGKTW------------EKDPVGEEVP 302 (334)
T ss_pred CCCccccccCCcc------ccccceeeEEEcCC-CCEEE-EcCCCeEEE-eCCCCCCC------------eECCcCCCCC
Confidence 3332221111100 01124678889886 45544 455665543 33322210 0000001112
Q ss_pred cceEEEEEcCCCCeeEeecCCcEEEEec
Q 011160 262 VGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (492)
Q Consensus 262 ~~i~~~~~s~~~~~l~~~~~~~i~~~d~ 289 (492)
.....+.|..+++.++++..+.|..|+-
T Consensus 303 ~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 303 SNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred cceEEEEEeCCCceEEECCCceEEEecC
Confidence 4678888888888999998998887764
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.41 E-value=2.2 Score=34.29 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=24.6
Q ss_pred eeeeEEeecCCC------cEEEEeeccCeEEEEecCC
Q 011160 344 TVKGVNFFGPKC------EYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 344 ~v~~~~~~s~~g------~~l~sg~~dg~i~iwd~~~ 374 (492)
.+.+++| ||-| .+||+...+|.|.||....
T Consensus 87 ~vv~~aW-SP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAW-SPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEE-CCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3888998 8854 4889999999999998653
No 456
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.39 E-value=8.5 Score=36.61 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=32.9
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe--cC---CceeEEEeecCCCCeEE
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--AD---RHVVNCIEPHPHSTVLA 401 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h---~~~v~~~~~s~~~~~l~ 401 (492)
|..+.- .|+++ |..|+.+|.++. +.+.++....+. .| .+.|..+..-|++++-+
T Consensus 421 V~aive-d~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~ 479 (671)
T COG3292 421 VSAIVE-DPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWL 479 (671)
T ss_pred eeeeee-cCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEE
Confidence 556665 88888 677888886653 333433333332 12 23477888999998543
No 457
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.39 E-value=5.4 Score=32.81 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=80.3
Q ss_pred CEEEEecCCCeEEEEECCC--CceeeeeccCcCcceEEEEecCCCCCceEEeecCC---C---cEEEE-ecccC----Ce
Q 011160 74 DILISGSDDRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G---QVRHA-QILER----GG 140 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g---~v~iw-~~~~~----~~ 140 (492)
..|..+...+.|.+|++.. .....+| ..-+.|..+.++. .|++|+|--.+ . .+|+| +++.. ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 3444435557899999883 3344555 3447899999999 99999986432 2 55665 22211 12
Q ss_pred eeeEEeec---------------------CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCCCC-C
Q 011160 141 VETKLLGK---------------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDD-R 197 (492)
Q Consensus 141 ~~~~~~~~---------------------~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~-~ 197 (492)
+..+ +.+ -..++.+++..|-.+++ +.|+ ++.+.+|.+..... ...+....... .
T Consensus 105 v~vR-iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l 181 (215)
T PF14761_consen 105 VRVR-IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSL 181 (215)
T ss_pred EEEE-EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEEEEecccccEEechhhh
Confidence 2111 111 13466788888866554 4444 35788888765543 21111111100 0
Q ss_pred CcceeecceEEEEEcCCCCceEEEecCCCeEEEEec
Q 011160 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~ 233 (492)
-.+.....+..+++.. .++|..+ +-.++++.+
T Consensus 182 ~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 182 IDHIDNFKPTQVAICE---GYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hheecCceEEEEEEEe---eEEEEec-CCEEEEEEE
Confidence 0111222356667763 4666654 456666654
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=92.36 E-value=5.4 Score=38.39 Aligned_cols=104 Identities=9% Similarity=-0.056 Sum_probs=51.6
Q ss_pred CCCEEEEecCCC---eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec
Q 011160 72 DGDILISGSDDR---RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (492)
Q Consensus 72 ~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 148 (492)
+|++.+.||.++ .+..||..++.-...-.......-.+++ .- ++...+.|+ .+.+||..++.......+..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~--~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VF--GRRLFLVGR---NAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EE--CCEEEEECC---ceEEecCCCCcEeEcCCCCC
Confidence 577777777553 4678887765432211011111111222 22 566666664 46788987776654322221
Q ss_pred CCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCC
Q 011160 149 HQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGA 184 (492)
Q Consensus 149 ~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 184 (492)
..... +++.. ++ ++.+.||.+ ..+..||..+.+
T Consensus 436 ~r~~~-~~~v~-~~-~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 436 PRDNP-ELIIV-DN-KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred Ccccc-EEEEE-CC-EEEEECCcCCCcccceEEEEECCCCe
Confidence 11122 23332 34 577777754 245566655543
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.22 E-value=12 Score=38.62 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=76.0
Q ss_pred ceEEEEEEcC-CCCEEEEecCCCeEEEEECCCCc----eeeeeccCcC----------cceEEEEecCCCCCceEEeecC
Q 011160 62 GCVNTVSFNT-DGDILISGSDDRRVILWDWKTER----VKLSFHSGHN----------DNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 62 ~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
.+...++|+| +.+.||.....|.-.||++.... ........+. ..-..+.|.+ +.+.|+.++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~--~~~~lLv~~r 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS--DSNRLLVCNR 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC--CCCEEEEEcC
Confidence 4677899998 45789999999999999992111 1111111111 2334788887 7777888776
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (492)
..+.++|+.+...............|..+.-+|..+..++.-+ ...|...++...
T Consensus 224 -~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 224 -SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred -CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 4688999987655332224445678999999988433333332 256777787764
No 460
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.09 E-value=5.4 Score=34.86 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=49.3
Q ss_pred ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec------CCCeEEEEECCCC
Q 011160 20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------DDRRVILWDWKTE 93 (492)
Q Consensus 20 g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~d~~i~iwd~~~~ 93 (492)
..|++||..+.+.. .--.+-.+.|++|.|..+.++++.|. ....+..||+.+.
T Consensus 16 ~~lC~yd~~~~qW~---------------------~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS---------------------SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEEEEECCCCEee---------------------cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 46999999977765 22233578999999987777777663 3557888998876
Q ss_pred ceeeeecc----CcCcceEEEEecC
Q 011160 94 RVKLSFHS----GHNDNVFQAKIMP 114 (492)
Q Consensus 94 ~~~~~~~~----~~~~~v~~~~~~~ 114 (492)
.. ..+.. .-.++|..+.+..
T Consensus 75 ~w-~~~~~~~s~~ipgpv~a~~~~~ 98 (281)
T PF12768_consen 75 TW-SSLGGGSSNSIPGPVTALTFIS 98 (281)
T ss_pred ee-eecCCcccccCCCcEEEEEeec
Confidence 53 22311 1246788887754
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=4.6 Score=42.33 Aligned_cols=77 Identities=10% Similarity=0.189 Sum_probs=54.0
Q ss_pred eeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec----CCC---e-e----------------eEEEe-cCCceeEE
Q 011160 336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK----KGG---E-L----------------IRVIE-ADRHVVNC 390 (492)
Q Consensus 336 ~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~----~~~---~-~----------------~~~~~-~h~~~v~~ 390 (492)
++-......|+++.+ ..+|+.+.+|.++ .+|.+ ..| + + +-.+. .+..+|..
T Consensus 172 ~~i~~dg~~V~~I~~-t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITY-TENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred eeeecCCceEEEEEe-ccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 333344556899997 8999988877644 45543 111 1 0 01223 45668999
Q ss_pred EeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 391 IEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 391 ~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
++.......|.+-+..|+|.+|++..
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 99988888999999999999999987
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.43 E-value=12 Score=34.80 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=80.1
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCcee-eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe--
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-- 140 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-- 140 (492)
...+..++++.+++.+..-..++-|+ .|... ..........++.+.|.+ ++..++++ ..|.+ +|....+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~--dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRA--DGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcC--CCCEEEEe-CCceE-EEecCCCCccc
Confidence 44556778888777776544334444 23221 112134455789999988 88777665 45554 333333321
Q ss_pred ---eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 141 ---VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 141 ---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
............+.++.|.+++ . ++.++..|.+.... ..++.-........ -...++.+.|.++ ++
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~-------~~~~ly~v~f~~~-~~ 383 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADN-------IAANLYSVKFFDD-KK 383 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCC-------CCcceeEEEEcCC-Cc
Confidence 1111111122358889999887 3 56666778776653 33433222211100 2235788998775 44
Q ss_pred eEEEecCCCeEEEE
Q 011160 218 LFAVAGSDEYTRLY 231 (492)
Q Consensus 218 ~l~~~~~dg~v~i~ 231 (492)
.+++ +.+|.|.-|
T Consensus 384 g~~~-G~~G~il~~ 396 (398)
T PLN00033 384 GFVL-GNDGVLLRY 396 (398)
T ss_pred eEEE-eCCcEEEEe
Confidence 4444 566766544
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.24 E-value=0.022 Score=51.55 Aligned_cols=135 Identities=18% Similarity=0.281 Sum_probs=88.4
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEE-EecCCCeEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI-SGSDDRRVIL 87 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~i~i 87 (492)
.+.-++.++.+..|..||-. |+... .+ .-.+....++|..++..++ .+-..+.+.+
T Consensus 45 e~~nlavaca~tiv~~YD~a-gq~~l---------------------e~-n~tg~aldm~wDkegdvlavlAek~~piyl 101 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKA-GQVIL---------------------EL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYL 101 (615)
T ss_pred CCCceehhhhhhHHHhhhhh-cceec---------------------cc-CCchhHhhhhhccccchhhhhhhcCCCeee
Confidence 33446666667777788765 44331 11 1244556788887776554 4556789999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEE
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
|++.+... .++..+-...-.-+.|++ ....++.+...|.+.|++..+.+.+.. ...|..+++++++.+.+ +.+
T Consensus 102 wd~n~eyt-qqLE~gg~~s~sll~wsK--g~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~RRgtq~av~lEd--~vi 174 (615)
T KOG2247|consen 102 WDVNSEYT-QQLESGGTSSKSLLAWSK--GTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQRRGTQIAVTLED--YVI 174 (615)
T ss_pred chhhhhhH-HHHhccCcchHHHHhhcc--CCccccccccccceEEEeccchhhhhh--hcccccceeEEEecccc--eee
Confidence 99976442 222122222222278998 888889898899999999887666553 55599999999999987 345
Q ss_pred EEcCCC
Q 011160 168 TCGEDG 173 (492)
Q Consensus 168 ~~~~dg 173 (492)
.++.|.
T Consensus 175 l~dcd~ 180 (615)
T KOG2247|consen 175 LCDCDN 180 (615)
T ss_pred ecCcHH
Confidence 555443
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=6.9 Score=41.19 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=42.6
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
+.+..+++++...+ +...+.+-+|+.........+.. ....+++++..++++..||.+.+||...++.
T Consensus 201 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 201 SLQVLYYSPTKILI--GFNRGLVVIKDRASKYVQSAYLP-----NGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cceeeeecCCCcce--eeeeeeeeehhcccccchhhccc-----ccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 44444445543333 33456677777644433333322 2222288899999999999999999999865
No 465
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.87 E-value=15 Score=33.28 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=42.6
Q ss_pred eeeEEeecCCCcEEEEeec-----cC---------eEEE--EecCC-CeeeE----EEec-----CCceeEEEeecCCCC
Q 011160 345 VKGVNFFGPKCEYVVSGSD-----CG---------RIFI--WKKKG-GELIR----VIEA-----DRHVVNCIEPHPHST 398 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~-----dg---------~i~i--wd~~~-~~~~~----~~~~-----h~~~v~~~~~s~~~~ 398 (492)
.-++++ +|+|+.|+++.+ |+ .++| ||..+ ++... .+.. ....|..+.+-++++
T Consensus 149 ~E~la~-~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 149 FEGLAV-SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred eEEEEE-CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 678888 999996665432 22 1444 45444 32222 2222 345689999999999
Q ss_pred eEEEe-----eCCCCEEEeccCCC
Q 011160 399 VLASS-----GIESDIKILTPNAA 417 (492)
Q Consensus 399 ~l~s~-----~~dg~i~iw~~~~~ 417 (492)
+|+-= +....++|+.+.-.
T Consensus 228 lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 228 LLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred EEEEEccCCCCccceEEEEEEEcc
Confidence 77632 23456677766544
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=9.6 Score=31.12 Aligned_cols=106 Identities=9% Similarity=0.091 Sum_probs=62.8
Q ss_pred CCceEEeecCC--CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCC
Q 011160 117 DDRSIVTCAAD--GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (492)
Q Consensus 117 ~~~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (492)
++.++.+.+.- ..|++|++.+++.+....+.. ..+..=-...-+..+....-.+|.-..+|.++-+.+..+...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC--
Confidence 56777776653 469999999888776655541 122111111123234455567888889999888877666532
Q ss_pred CCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
+.-..++.. +..|+.+....+++.-|..+...
T Consensus 131 ---------GeGWgLt~d---~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 131 ---------GEGWGLTSD---DKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred ---------CcceeeecC---CcceEeeCCceEEEecCHHHhhh
Confidence 233455543 33466666666777777666543
No 467
>PLN02193 nitrile-specifier protein
Probab=89.78 E-value=20 Score=34.54 Aligned_cols=109 Identities=10% Similarity=0.069 Sum_probs=55.6
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeecc----CcCcceEEEEecCCCCCceEEeecCC----CcEEEEecccC
Q 011160 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHS----GHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILER 138 (492)
Q Consensus 72 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~ 138 (492)
++++++.|+.++ .+..||+.+.+-...-.. ..... ..++.. +++.++.++.+ ..+.+||+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEEE---CCcEEEEECCCCCccCceEEEECCCC
Confidence 466777777543 466788776543211100 00111 122222 56677776654 45888998876
Q ss_pred CeeeeEEee--cCCCceEEEEEcCCCCcEEEEEcCC--------------CcEEEEeCCCCCcc
Q 011160 139 GGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGED--------------GLVQHFDLRTGAAT 186 (492)
Q Consensus 139 ~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~ 186 (492)
......... .......+++.. ++ ++++.|+.. ..+.+||+.+.+..
T Consensus 354 ~W~~~~~~g~~P~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 354 KWTQVETFGVRPSERSVFASAAV-GK-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EEEEeccCCCCCCCcceeEEEEE-CC-EEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 654332110 011111222222 33 577777753 24788888877654
No 468
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=25 Score=34.94 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=38.1
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 137 (492)
--.|+|++.. |..+..+.-.|. .+-.+.|+ +...|+....+|++++|++..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs---~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHG-ELIGMGWS---DDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCC-Ceeeeccc---CCceEEEEeccceEEEeecch
Confidence 3468899865 666666543444 78889998 566788888999999999854
No 469
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.15 E-value=2.1 Score=41.67 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=64.9
Q ss_pred cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC
Q 011160 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (492)
..++++.-+| .++.++.+..||.|+++++........ -....+-..+.|...| |+++..|..+.-|. +.|.
T Consensus 15 e~~~aiqshp--~~~s~v~~~~d~si~lfn~~~r~qski---~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~-~dgv 85 (1636)
T KOG3616|consen 15 EFTTAIQSHP--GGQSFVLAHQDGSIILFNFIPRRQSKI---CEEAKPKENLVFTNHG---LVTATSDRRALAWK-EDGV 85 (1636)
T ss_pred ceeeeeeecC--CCceEEEEecCCcEEEEeecccchhhh---hhhcCCccceeeeccc---eEEEeccchhheee-ccCc
Confidence 3567788889 999999999999999999865443221 1122344556676655 67888888888886 3343
Q ss_pred ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
..+.|..... ......++...|...+ ++|.--|-|.-+|
T Consensus 86 vqqqfdyndq-------sekefss~~cdptaqn--vvgtlcggv~q~d 124 (1636)
T KOG3616|consen 86 VQQQFDYNDQ-------SEKEFSSILCDPTAQN--VVGTLCGGVEQFD 124 (1636)
T ss_pred chhhccccch-------hhhhccceecCchhhh--hhhhhccceeeeh
Confidence 3333332211 2223455555665222 2344444455555
No 470
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.10 E-value=16 Score=34.51 Aligned_cols=54 Identities=7% Similarity=0.193 Sum_probs=36.7
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--eeee---cc-CcCcceEEEEecC
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSF---HS-GHNDNVFQAKIMP 114 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~---~~-~~~~~v~~~~~~~ 114 (492)
-..-+.|+|.|||++|++--..|.|++++..++.. +..+ .. ........|+++|
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 34567999999998887765569999998654432 1111 11 1356789999998
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.01 E-value=22 Score=34.17 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=72.0
Q ss_pred CEEEEe---cCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC
Q 011160 74 DILISG---SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 74 ~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
-++++. ...+...+.|. .|.....+. ........+...+ +|.+++... ..+..+|+. ++.+....+....
T Consensus 116 l~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~-~~~~~~~~~~~l~--nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLIDN-NGDVRWYLP-LDSGSDNSFKQLP--NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp EEEEEETT--BEEEEEEEET-TS-EEEEE--GGGT--SSEEE-T--TS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred EEEEeCCCCCCCceEEEECC-CccEEEEEc-cCccccceeeEcC--CCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Confidence 345554 23455666674 355544431 1111111155666 888777655 678888874 4444433333311
Q ss_pred -CceEEEEEcCCCCcEEEEEcC-------------CCcEEEEeCCCCCccceeecCCCCCC-----------------Cc
Q 011160 151 -GRAHKLAIEPGSPHVFYTCGE-------------DGLVQHFDLRTGAATELFTCRPIDDR-----------------RN 199 (492)
Q Consensus 151 -~~v~~i~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~ 199 (492)
..=..+...|+| ++|+.+.. .-.|..+| .+|+.+..+........ ..
T Consensus 189 ~~~HHD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~ 266 (477)
T PF05935_consen 189 YDFHHDIDELPNG-NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG 266 (477)
T ss_dssp E-B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred cccccccEECCCC-CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence 111356777888 46665551 11355556 66665544433221100 00
Q ss_pred ceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
...=..++++.+.+.+..+++++-.-..|...|.++++..
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 0111348899999965677777766668888887777654
No 472
>PLN02153 epithiospecifier protein
Probab=88.89 E-value=18 Score=32.97 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=53.4
Q ss_pred CCCEEEEecCC-----------CeEEEEECCCCceeeeeccC---cCcceEEEEecCCCCCceEEeecCC----------
Q 011160 72 DGDILISGSDD-----------RRVILWDWKTERVKLSFHSG---HNDNVFQAKIMPFTDDRSIVTCAAD---------- 127 (492)
Q Consensus 72 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d---------- 127 (492)
++++++.|+.+ ..|.+||..+.+-...-..+ ....-.+++.. ++++++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~gG~~~ 213 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV---QGKIWVVYGFATSILPGGKSD 213 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE---CCeEEEEeccccccccCCccc
Confidence 46667777753 24777888765432111000 01111122222 56666655432
Q ss_pred ---CcEEEEecccCCeeeeEEeec-C-CCceEEEEEcCCCCcEEEEEcCC--------------CcEEEEeCCCCCcc
Q 011160 128 ---GQVRHAQILERGGVETKLLGK-H-QGRAHKLAIEPGSPHVFYTCGED--------------GLVQHFDLRTGAAT 186 (492)
Q Consensus 128 ---g~v~iw~~~~~~~~~~~~~~~-~-~~~v~~i~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~ 186 (492)
..|.+||+.+.+......... . .....+++. .++ ++++.|+.. ..+..+|+.+....
T Consensus 214 ~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 214 YESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGK-YIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred eecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECC-EEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 458888888776554321100 1 111122222 233 677777752 25778888776543
No 473
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.88 E-value=0.88 Score=45.18 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=49.6
Q ss_pred eEEEEEEcC---CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEE-----------ecCCCCCceEEeecCCC
Q 011160 63 CVNTVSFNT---DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAK-----------IMPFTDDRSIVTCAADG 128 (492)
Q Consensus 63 ~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~~l~~~~~dg 128 (492)
.+.-+.|.| ..-++..+-.++.|++-.+.+... .+..+|...+..++ .+| ||+.+++++.||
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~dG 257 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSP--DGTVFAWAISDG 257 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCC--CCcEEEEeecCC
Confidence 334455544 567788888889999877665433 33356776655543 477 999999999999
Q ss_pred cEEEEeccc
Q 011160 129 QVRHAQILE 137 (492)
Q Consensus 129 ~v~iw~~~~ 137 (492)
.++.|.+.-
T Consensus 258 ~v~f~Qiyi 266 (1283)
T KOG1916|consen 258 SVGFYQIYI 266 (1283)
T ss_pred ccceeeeee
Confidence 999988753
No 474
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.50 E-value=0.087 Score=47.98 Aligned_cols=143 Identities=12% Similarity=0.129 Sum_probs=94.7
Q ss_pred eEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc
Q 011160 107 VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (492)
Q Consensus 107 v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 186 (492)
.-...|-| .+.-++.++.+..+..||-.... ... . ..+.....++|.-+++..++.+-..+.+.+||+.+....
T Consensus 37 pi~~~w~~--e~~nlavaca~tiv~~YD~agq~-~le--~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 37 PIIHRWRP--EGHNLAVACANTIVIYYDKAGQV-ILE--L-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred cceeeEec--CCCceehhhhhhHHHhhhhhcce-ecc--c-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 34456777 66668888888889999854322 221 1 233455678888888877778888899999999875433
Q ss_pred ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEE
Q 011160 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (492)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (492)
+. ..... +.. .-+.|++- ...++.+...|.+.|+...+.+.. ...+.|...+.+
T Consensus 111 qL-E~gg~-------~s~--sll~wsKg-~~el~ig~~~gn~viynhgtsR~i---------------iv~Gkh~RRgtq 164 (615)
T KOG2247|consen 111 QL-ESGGT-------SSK--SLLAWSKG-TPELVIGNNAGNIVIYNHGTSRRI---------------IVMGKHQRRGTQ 164 (615)
T ss_pred HH-hccCc-------chH--HHHhhccC-CccccccccccceEEEeccchhhh---------------hhhcccccceeE
Confidence 22 11100 111 12677875 667888888999999998775522 223347788999
Q ss_pred EEEcCCCCeeEeecC
Q 011160 267 LAFSDQSELLVSYND 281 (492)
Q Consensus 267 ~~~s~~~~~l~~~~~ 281 (492)
+++.+.+..+....+
T Consensus 165 ~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 165 IAVTLEDYVILCDCD 179 (615)
T ss_pred EEecccceeeecCcH
Confidence 999998865554433
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=9.8 Score=40.09 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=86.5
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEE--------cCCCCEE
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF--------NTDGDIL 76 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------s~~~~~l 76 (492)
.||.-++.-+|- |..+.+|+.+++.-. ..+.+-...|..+.. -|.=++|
T Consensus 86 iFpeI~RaWiTi--Dn~L~lWny~~~~e~---------------------~~~d~~shtIl~V~LvkPkpgvFv~~Iqhl 142 (1311)
T KOG1900|consen 86 IFPEIGRAWITI--DNNLFLWNYESDNEL---------------------AEYDGLSHTILKVGLVKPKPGVFVPEIQHL 142 (1311)
T ss_pred cchhhcceEEEe--CCeEEEEEcCCCCcc---------------------ccccchhhhheeeeeecCCCCcchhhhhee
Confidence 466666666665 678999999985544 334444445555443 2333444
Q ss_pred EEecCCCeEEEEECCCCcee--eeeccC------cCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC--------e
Q 011160 77 ISGSDDRRVILWDWKTERVK--LSFHSG------HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG--------G 140 (492)
Q Consensus 77 ~s~~~d~~i~iwd~~~~~~~--~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--------~ 140 (492)
+.-..--.|.|+-+.-.+.. ...+.. ....|.++.... +|+.+++| .|| .+|.+.-.. +
T Consensus 143 LvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~--nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc 217 (1311)
T KOG1900|consen 143 LVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE--NGRIFFAG-RDG--NLYELVYQAEDGWFGSRC 217 (1311)
T ss_pred EEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEecc--CCcEEEee-cCC--CEEEEEEeccCchhhccc
Confidence 44444455666654322210 111111 244678888665 67665555 555 455543110 0
Q ss_pred --e-----------e-eEEee-cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC
Q 011160 141 --V-----------E-TKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (492)
Q Consensus 141 --~-----------~-~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (492)
+ + ...+. .+.++|..|++...- .++++-+..|+|.+|++..
T Consensus 218 ~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 218 RKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 0 0 00122 456799999998765 6889999999999999987
No 476
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.96 E-value=1.9 Score=24.53 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceee
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFT 190 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 190 (492)
|++..++++...++.|.++|..+++....+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 4665566666678899999998887666554
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.92 E-value=1.3 Score=43.54 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=28.6
Q ss_pred ceEEEEEEcC----CCCEEEEecCCCeEEEEECCCCceeeee
Q 011160 62 GCVNTVSFNT----DGDILISGSDDRRVILWDWKTERVKLSF 99 (492)
Q Consensus 62 ~~v~~~~~s~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (492)
+.+..+++++ +..+|++.+.|+++|+||+.++.++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4455566655 6789999999999999999999986655
No 478
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.88 E-value=22 Score=32.64 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=100.8
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEc----CCCCE--EEEec-
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN----TDGDI--LISGS- 80 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~--l~s~~- 80 (492)
|...+++...+++-+.+||++ |+.+. .+. .+.++.+..- -.|+. |+.++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq---------------------~~~--~Gr~NNVDvrygf~l~g~~vDlavas~ 121 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQ---------------------SLP--VGRPNNVDVRYGFPLNGKTVDLAVASD 121 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEE---------------------EE---SS-EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEE---------------------eec--CCCcceeeeecceecCCceEEEEEEec
Confidence 556778888888999999999 77662 221 1222322221 12322 33333
Q ss_pred CC---CeEEEEECCC--Cceeeeecc------CcCcceEEEEec--CCCCCc-eEEeecCCCcEEEEecccC-C-ee---
Q 011160 81 DD---RRVILWDWKT--ERVKLSFHS------GHNDNVFQAKIM--PFTDDR-SIVTCAADGQVRHAQILER-G-GV--- 141 (492)
Q Consensus 81 ~d---~~i~iwd~~~--~~~~~~~~~------~~~~~v~~~~~~--~~~~~~-~l~~~~~dg~v~iw~~~~~-~-~~--- 141 (492)
.+ .+|++|.+.. +.. ..+.. .....++.+|+- |. ++. +++....+|.+..|.+... . .+
T Consensus 122 R~~g~n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~-~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~ 199 (381)
T PF02333_consen 122 RSDGRNSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPS-TGALYAFVNGKDGRVEQYELTDDGDGKVSAT 199 (381)
T ss_dssp -CCCT-EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TT-T--EEEEEEETTSEEEEEEEEE-TTSSEEEE
T ss_pred CcCCCCeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCC-CCcEEEEEecCCceEEEEEEEeCCCCcEeeE
Confidence 22 4699997753 332 22211 111246777763 31 343 5667778899998888632 2 11
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc--ceeecCCCCCCCcceeecceEEEEEc--CCC-C
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAID--PRN-A 216 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~-~ 216 (492)
..+.+. -...+..+...... ..|+.+-.+.-|.-|+.+..... ..+...... . ....+-.|++- +++ +
T Consensus 200 lVR~f~-~~sQ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~---~--l~aDvEGlaly~~~~g~g 272 (381)
T PF02333_consen 200 LVREFK-VGSQPEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD---G--LVADVEGLALYYGSDGKG 272 (381)
T ss_dssp EEEEEE--SS-EEEEEEETTT-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS---S--B-S-EEEEEEEE-CCC-E
T ss_pred EEEEec-CCCcceEEEEeccc-CCEEEecCccEEEEEecCCCCCCcceeeeccccc---c--cccCccceEEEecCCCCe
Confidence 122233 23478888888776 47888888887888887633221 112111110 0 12244555553 333 3
Q ss_pred ceEEEecCCCeEEEEeccc
Q 011160 217 NLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~ 235 (492)
.+|++.-.+++..+|+...
T Consensus 273 YLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 273 YLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEEGGGTEEEEEESST
T ss_pred EEEEEcCCCCeEEEEecCC
Confidence 3455555677899999864
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.68 E-value=10 Score=28.57 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=61.0
Q ss_pred EecCCCCCceEEeecCCCcEEEEecccCCeee-----eEEeecCCCceEEEEEcC----CCCcEEEEEcCCCcEEEEeCC
Q 011160 111 KIMPFTDDRSIVTCAADGQVRHAQILERGGVE-----TKLLGKHQGRAHKLAIEP----GSPHVFYTCGEDGLVQHFDLR 181 (492)
Q Consensus 111 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-----~~~~~~~~~~v~~i~~~~----~~~~~l~~~~~dg~i~iwd~~ 181 (492)
.|.. ....|+.++.-|.|.|.+........ ...+-.-...|++++--+ ++...|+.|+. ..+..||+.
T Consensus 5 kfDG--~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDG--VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EeCC--CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 4444 45578888888889998876432111 011222445677775443 23345666654 679999998
Q ss_pred CCCccceeecCCCCCCCcceeecceEEEEEcCCC--CceEEEecCCCeEEEEeccc
Q 011160 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~v~i~d~~~ 235 (492)
....+..... ...++++.+-.-+ ..-++..+.+..|.-||...
T Consensus 82 ~N~d~Fyke~-----------~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKEV-----------PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhhC-----------ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 8765543332 2346666663211 12344444456666666543
No 480
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=18 Score=31.41 Aligned_cols=188 Identities=10% Similarity=0.047 Sum_probs=105.9
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~ 90 (492)
.++..+..+.-++|.|+.+..-.. ++..+. -.+--.++..+ |++...+..|.-+-+.|+
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~sP~------------------~~~~ln-t~gyaygv~vs--Gn~aYVadlddgfLivdv 155 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPDSPT------------------LIGFLN-TDGYAYGVYVS--GNYAYVADLDDGFLIVDV 155 (370)
T ss_pred cEEEEEcCCCceEEEeccCCCCcc------------------eecccc-CCceEEEEEec--CCEEEEeeccCcEEEEEC
Confidence 344455556678888888655431 111121 12444555554 888888885555777888
Q ss_pred CCCce---eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEE
Q 011160 91 KTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 91 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
.+... ..++ ......-..++. .|++-+.+..|+-+.+-|+.................+.++..+++- .++
T Consensus 156 sdpssP~lagry-a~~~~d~~~v~I----SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr--~y~ 228 (370)
T COG5276 156 SDPSSPQLAGRY-ALPGGDTHDVAI----SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR--AYL 228 (370)
T ss_pred CCCCCceeeeee-ccCCCCceeEEE----ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe--eEE
Confidence 76543 2222 223333456666 4677788888999999999876554322122223367788777764 223
Q ss_pred EEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
+.. +.-+.+-|..+.+....+...... ....++.+..+ +++......+.-+.+-|+.+.
T Consensus 229 vvy-~egvlivd~s~~ssp~~~gsyet~------~p~~~s~v~Vs---~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 229 VVY-DEGVLIVDVSGPSSPTVFGSYETS------NPVSISTVPVS---GEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEc-ccceEEEecCCCCCceEeeccccC------Ccccccceecc---cceeeeeccccCceeEeccCC
Confidence 333 345777787777655555432211 11122223333 456666666666777777653
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.61 E-value=10 Score=28.54 Aligned_cols=113 Identities=10% Similarity=0.102 Sum_probs=65.5
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCce-------eeeeccCcCcceEEEEecCC---CCCceEEeecCCCcEEEEec
Q 011160 66 TVSFNTDGDILISGSDDRRVILWDWKTERV-------KLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~v~iw~~ 135 (492)
.-.|......|+.++.-|+|.|++...... ..+++ .-...|++++-.++ .....|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 345655566788888888999998653321 11221 23456777765543 23456666664 57899999
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcC---CCCcEEEEEcCCCcEEEEeCCCCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEP---GSPHVFYTCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~l~~~~~dg~i~iwd~~~~~ 184 (492)
.....+.. +.-.+.|+++.+-. ....+++ .+.+..|.-||.+..+
T Consensus 81 ~~N~d~Fy---ke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNSDLFY---KEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNE 128 (136)
T ss_pred ccCchhhh---hhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcE
Confidence 88766543 33346677776632 1112444 4444566666655443
No 482
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.56 E-value=28 Score=33.55 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=58.3
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-cCc-CcceEEEEecCCCCCceEEeec--------------CCCcE
Q 011160 67 VSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-SGH-NDNVFQAKIMPFTDDRSIVTCA--------------ADGQV 130 (492)
Q Consensus 67 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~l~~~~--------------~dg~v 130 (492)
+...++|.+++..+ ..++.+|+. |+.+..+. .+. ...-..+...| +|++|+.+. .| .|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~--nGn~L~l~~~~~~~~~~~~~~~~~D-~I 226 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP--NGNLLILASETKYVDEDKDVDTVED-VI 226 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T--TS-EEEEEEETTEE-TS-EE---S--EE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC--CCCEEEEEeecccccCCCCccEecC-EE
Confidence 66778898877665 678888875 55444431 110 11124566777 888887766 12 23
Q ss_pred EEEecccCCeeeeEEeecC-------------------------CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc
Q 011160 131 RHAQILERGGVETKLLGKH-------------------------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA 185 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~-------------------------~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 185 (492)
..+| .+++.+....+..| --.++++.+.+....+++++-.-..|...|.++++.
T Consensus 227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 3333 33333222111111 024789999995546666665556888899888887
Q ss_pred cceeec
Q 011160 186 TELFTC 191 (492)
Q Consensus 186 ~~~~~~ 191 (492)
...+..
T Consensus 306 ~Wilg~ 311 (477)
T PF05935_consen 306 KWILGP 311 (477)
T ss_dssp EEEES-
T ss_pred EEEeCC
Confidence 766543
No 483
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.25 E-value=22 Score=32.13 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCc------EEEEeCCCC----CccceeecCCCCCCCcc---eeecceEEEEEcCCCCc
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGL------VQHFDLRTG----AATELFTCRPIDDRRNY---MTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~------i~iwd~~~~----~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ 217 (492)
+.+..|.+.+++. .+++.+.+|. +..+.+... ..+............+. ......-+|++.++ +.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~-g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD-GS 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC-CC
Confidence 4567788886553 5677777777 665655441 11111111111000000 01113457778554 66
Q ss_pred eEEEecCC------CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee
Q 011160 218 LFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (492)
Q Consensus 218 ~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (492)
++++.-.+ ..|+.++.. ++......+................+..+.+++++|+|+.|+++
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 77766566 678888866 55433322211110000000222346789999999999965554
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.12 E-value=24 Score=32.35 Aligned_cols=197 Identities=15% Similarity=0.213 Sum_probs=102.5
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEe--cCCCCCce--EEeec-CC---CcEEEEecccCCeee
Q 011160 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKI--MPFTDDRS--IVTCA-AD---GQVRHAQILERGGVE 142 (492)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~--l~~~~-~d---g~v~iw~~~~~~~~~ 142 (492)
|...+|+.....+-+.+||++ |+.+..+..+.-..| .+.+ .- +++. |+.++ ++ ..|++|.+.......
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-Dvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-DVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-EEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-eeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 345678888888899999987 565566633322222 2221 11 3332 44443 32 469999886432211
Q ss_pred eEE------eecCCCceEEEEEc--C-CCCcEEEEEcCCCcEEEEeCCC---CC----ccceeecCCCCCCCcceeecce
Q 011160 143 TKL------LGKHQGRAHKLAIE--P-GSPHVFYTCGEDGLVQHFDLRT---GA----ATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 143 ~~~------~~~~~~~v~~i~~~--~-~~~~~l~~~~~dg~i~iwd~~~---~~----~~~~~~~~~~~~~~~~~~~~~v 206 (492)
... +......+..+|+. | ++..+++....+|.+.-|-+.. +. .+..|. -...+
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-----------~~sQ~ 210 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-----------VGSQP 210 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE------------SS-E
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-----------CCCcc
Confidence 110 11122346677763 3 3545667788889888887752 22 223333 23367
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC--CC-CeeEeec--C
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QS-ELLVSYN--D 281 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~-~~l~~~~--~ 281 (492)
-.++.... ...|+.+-++.-|.-|+..-..-..... + ....-.+....|..|++-. ++ .||++.+ +
T Consensus 211 EGCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~~~~----v----~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 211 EGCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGNDRTL----V----ASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp EEEEEETT-TTEEEEEETTTEEEEEESSCCC-S--EE----E----EEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred eEEEEecc-cCCEEEecCccEEEEEecCCCCCCccee----e----ecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence 77888876 5688888888878777765322110000 0 0000112234667777653 44 3666666 4
Q ss_pred CcEEEEecCC
Q 011160 282 EFIYLFTQDM 291 (492)
Q Consensus 282 ~~i~~~d~~~ 291 (492)
++..+|+...
T Consensus 282 ~sf~Vy~r~~ 291 (381)
T PF02333_consen 282 NSFAVYDREG 291 (381)
T ss_dssp TEEEEEESST
T ss_pred CeEEEEecCC
Confidence 4799999875
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.99 E-value=28 Score=32.98 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=37.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 149 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
.-...+.|+|.|++ .+|++--..|.|++++..++.............. .....+..|+++|+
T Consensus 28 GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~---~ge~GLlglal~Pd 89 (454)
T TIGR03606 28 GLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVND---AQHNGLLGLALHPD 89 (454)
T ss_pred CCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceecc---CCCCceeeEEECCC
Confidence 33566899999998 5655554469999998665543222111111000 02346889999986
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.79 E-value=16 Score=34.53 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=24.5
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
..|.+++..+. .+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~-r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPS-RRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETT-TTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCC-cCEEEEEeCCCcEEEEEEeC
Confidence 34889999987 58999999999999999974
No 487
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=86.43 E-value=24 Score=31.55 Aligned_cols=60 Identities=10% Similarity=0.164 Sum_probs=39.7
Q ss_pred CCEEEEecCCCeEEEEECCCC-ceeeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEEEeccc
Q 011160 73 GDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILE 137 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~ 137 (492)
+++|+.|..+|. .+-++... .....+ .+..+|+++...+ ..+.|++-+ ....++++++..
T Consensus 13 ~~~lL~GTe~Gl-y~~~~~~~~~~~~kl--~~~~~v~q~~v~~--~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 13 GKWLLVGTEEGL-YVLNISDQPGTLEKL--IGRRSVTQIWVLE--ENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred CcEEEEEeCCce-EEEEcccCCCCeEEe--cCcCceEEEEEEh--hhCEEEEEeCCcceEEEEEHHH
Confidence 368999999994 44455542 222333 3567899999998 666665544 444599999843
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.06 E-value=21 Score=30.52 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=71.1
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC-C--CcEEEEeccc----CCeeeeEEeecCCCceEEEE
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-D--GQVRHAQILE----RGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d--g~v~iw~~~~----~~~~~~~~~~~~~~~v~~i~ 157 (492)
-.+||+.+++... +......-+.+-.+.| +|++|.+|+. + ..+++++... .........-.....--.+.
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~--dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLP--DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCC--CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 4578988876532 2122222334445777 9999999875 2 3577887644 11111100011223333455
Q ss_pred EcCCCCcEEEEEcCCC-cEEEEeCCCC-CccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 158 IEPGSPHVFYTCGEDG-LVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg-~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
..||| ++|+.|+... +..+|.-+.. .....+...... .......-..-+...|+ |++|+.+..+. .|||..+
T Consensus 125 ~L~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~--~~~~~~nlYP~~~llPd-G~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 125 TLPDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQT--SDTLPNNLYPFVHLLPD-GNLFIFANRGS--IIYDYKT 198 (243)
T ss_pred ECCCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhh--hccCccccCceEEEcCC-CCEEEEEcCCc--EEEeCCC
Confidence 66788 4777776653 3445543221 111111100000 00001111224556787 78888887654 5667776
Q ss_pred ccc
Q 011160 236 YKW 238 (492)
Q Consensus 236 ~~~ 238 (492)
.+.
T Consensus 199 n~v 201 (243)
T PF07250_consen 199 NTV 201 (243)
T ss_pred CeE
Confidence 643
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.93 E-value=3.7 Score=22.97 Aligned_cols=32 Identities=6% Similarity=-0.007 Sum_probs=20.3
Q ss_pred EecCCceeEEEeecCCCCeEEEeeC-C--CCEEEe
Q 011160 381 IEADRHVVNCIEPHPHSTVLASSGI-E--SDIKIL 412 (492)
Q Consensus 381 ~~~h~~~v~~~~~s~~~~~l~s~~~-d--g~i~iw 412 (492)
+....+.-....|||||+.|+-++. + |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3334456788899999998775543 4 666665
No 490
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.44 E-value=10 Score=30.50 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=25.7
Q ss_pred CceEEEEEcCCC-----CcEEEEEcCCCcEEEEeCCC
Q 011160 151 GRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRT 182 (492)
Q Consensus 151 ~~v~~i~~~~~~-----~~~l~~~~~dg~i~iwd~~~ 182 (492)
..|..++|+|.| ..+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999943 35788889999999998664
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.93 E-value=31 Score=31.55 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=8.5
Q ss_pred CeEEEEECCCCc
Q 011160 83 RRVILWDWKTER 94 (492)
Q Consensus 83 ~~i~iwd~~~~~ 94 (492)
..+.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 467888877654
No 492
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.69 E-value=30 Score=31.24 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=35.6
Q ss_pred CCCEEEEecC-----CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC----cEEEEecccCCee
Q 011160 72 DGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG----QVRHAQILERGGV 141 (492)
Q Consensus 72 ~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~v~iw~~~~~~~~ 141 (492)
++++.+.|+. ...+..||+.+.+-...-...........+... ++.+.+.|+.++ .+.+||+.+....
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKL--QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEE--CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 4666666664 245788888765532111001111222222223 677777777654 3567888776543
No 493
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.59 E-value=5 Score=39.48 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=44.1
Q ss_pred CCceEEeecCCCcEEEEeccc----CCeeeeEEeec--------------------CCCceEEEEEcC---CCCcEEEEE
Q 011160 117 DDRSIVTCAADGQVRHAQILE----RGGVETKLLGK--------------------HQGRAHKLAIEP---GSPHVFYTC 169 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~--------------------~~~~v~~i~~~~---~~~~~l~~~ 169 (492)
+...++.+..||.+....... +.......+.. ....+..+++++ ++..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566788888888888877654 11111111110 123455566665 233688999
Q ss_pred cCCCcEEEEeCCCCCccceeec
Q 011160 170 GEDGLVQHFDLRTGAATELFTC 191 (492)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~ 191 (492)
+.|+.+++||+.+++++.....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999998665543
No 494
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=84.45 E-value=60 Score=34.46 Aligned_cols=145 Identities=10% Similarity=0.097 Sum_probs=78.3
Q ss_pred CEEEEecC---------CCeEEEEECCC-----Cce------eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 74 DILISGSD---------DRRVILWDWKT-----ERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 74 ~~l~s~~~---------d~~i~iwd~~~-----~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
.+||.|.. -|.+.|+|+-. |++ ...+.....++|..++=- +|.+ +++. ...|.+|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l-~~~~-GqKI~v~ 1121 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHL-LSSQ-GQKIIVR 1121 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEE-EEcc-CcEEEEE
Confidence 57777632 47899998732 211 122224456778777754 4554 4433 2478999
Q ss_pred eccc-CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc
Q 011160 134 QILE-RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (492)
Q Consensus 134 ~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (492)
++.. ...+... +..-.-.+.++..- . ++|+.|.--..|.+.-.........+-.... ..-.+.++.|-
T Consensus 1122 ~l~r~~~ligVa-FiD~~~yv~s~~~v--k-nlIl~gDV~ksisfl~fqeep~rlsL~srd~-------~~l~v~s~EFL 1190 (1366)
T KOG1896|consen 1122 KLDRDSELIGVA-FIDLPLYVHSMKVV--K-NLILAGDVMKSISFLGFQEEPYRLSLLSRDF-------EPLNVYSTEFL 1190 (1366)
T ss_pred EeccCCcceeeE-EeccceeEEehhhh--h-hheehhhhhhceEEEEEccCceEEEEeecCC-------chhhceeeeeE
Confidence 9944 4433332 22222222332222 2 4566666666666655543322222211111 23357788887
Q ss_pred CCCCc-eEEEecCCCeEEEEecc
Q 011160 213 PRNAN-LFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 213 p~~~~-~l~~~~~dg~v~i~d~~ 234 (492)
-+|++ .++++..+++|++|-..
T Consensus 1191 Vdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1191 VDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EcCCeeEEEEEcCCCcEEEEEeC
Confidence 77544 47778889999887653
No 495
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.98 E-value=5.6 Score=22.21 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=21.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEcCC--CcEEEE
Q 011160 149 HQGRAHKLAIEPGSPHVFYTCGED--GLVQHF 178 (492)
Q Consensus 149 ~~~~v~~i~~~~~~~~~l~~~~~d--g~i~iw 178 (492)
....-....|+|||..+++++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999998777777766 666665
No 496
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.90 E-value=37 Score=31.66 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=65.0
Q ss_pred ccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccc
Q 011160 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (492)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (492)
...+..+.+.+++.+++++..+.+..- ...+..... ..........
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~---------------------------------~~f~~~~~~~ 325 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEED---------------------------------FDFEEADIKS 325 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccc---------------------------------cceeecccCC
Confidence 456889999999999888877765443 222210000 0001111111
Q ss_pred cceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe---cCCceeEEEeecCCCCeEEEeeCCCCEEEe
Q 011160 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (492)
Q Consensus 341 ~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (492)
....+..+.| .+++..+++| ..|.+.... ..|+.-.... .-....+.+.|.++++.+++| .+|.|.-|
T Consensus 326 ~~~~l~~v~~-~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 326 RGFGILDVGY-RSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceEEEEE-cCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 1112778888 7777776666 467666553 4444433332 223457899998877766665 57777655
No 497
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.73 E-value=37 Score=31.45 Aligned_cols=197 Identities=11% Similarity=0.002 Sum_probs=95.2
Q ss_pred eEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 011160 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (492)
Q Consensus 12 ~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~ 91 (492)
.+.++..+|.|.-.|.+++..+-. ..+.+....+.+-.+..+|+ |+.++.++.+...|..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~-------------------~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~ 129 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWS-------------------YPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAS 129 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEec-------------------ccCcCcceeccCceEEeCCe-EEEecccceEEEEECC
Confidence 344556677777778777774411 00000112222222223665 7777888888889988
Q ss_pred CCceeeeeccCcCc-ceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec-CCCceEEEEEcCCCCcEEEEE
Q 011160 92 TERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-HQGRAHKLAIEPGSPHVFYTC 169 (492)
Q Consensus 92 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~ 169 (492)
+|+.+... ..... .+...... ....++.++.++.+.-.+..++.......... -...+..-....++ .++.+
T Consensus 130 ~G~~~W~~-~~~~~~~~~~~~v~---~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~vy~~ 203 (370)
T COG1520 130 TGTLVWSR-NVGGSPYYASPPVV---GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG--TVYVG 203 (370)
T ss_pred CCcEEEEE-ecCCCeEEecCcEE---cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc--eEEEe
Confidence 89887776 23321 11111111 22333444466777777776666543321211 01111111112233 34555
Q ss_pred cC--CCcEEEEeCCCCCccceeecCCCCCCCcc--eeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 170 GE--DGLVQHFDLRTGAATELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 170 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
.. ++.+.-.|.+++................. ........+-. +.-+..++.++.+...+..+++.
T Consensus 204 ~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v----~~~~~~~~~~g~~~~l~~~~G~~ 272 (370)
T COG1520 204 SDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV----DGGVYAGSYGGKLLCLDADTGEL 272 (370)
T ss_pred cCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEE----CCcEEEEecCCeEEEEEcCCCce
Confidence 55 56788888888877665432211111000 00000111111 11235566777788888877764
No 498
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.28 E-value=4.3 Score=40.04 Aligned_cols=99 Identities=9% Similarity=0.073 Sum_probs=58.9
Q ss_pred EEEEEcCCCCEEEEecCCC-----eEEEEECC---CCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc
Q 011160 65 NTVSFNTDGDILISGSDDR-----RVILWDWK---TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (492)
Q Consensus 65 ~~~~~s~~~~~l~s~~~d~-----~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 136 (492)
..+.|-|+|..++|-+.|| .|+.+.-. .|+.-. ..+....+..++|+- ....++.+ ..+.|++|-..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l--r~~~dEk~~~~~wn~--~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL--RVGCDEKAFLENWNL--LSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc--cCCchhhhhhhhhhH--HHHHHHHh-hcceEEEEEcc
Confidence 3589999999999987554 34444422 222211 124445677788875 45545444 34679999876
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
+-.......+ .-..+.-+.|+|...+.++..+
T Consensus 325 NyhWYLK~e~--~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 325 NYHWYLKVER--QIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred ceEEEEEEee--cCCCcceeeeccccCcEEEEec
Confidence 6555444222 2345667889997665554443
No 499
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.27 E-value=29 Score=29.91 Aligned_cols=190 Identities=11% Similarity=0.063 Sum_probs=111.2
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 141 (492)
..-..++-.|||..-.++...+.|---|-.+|+... +.-+....-..+..-| ++..-++=+.. -|.-.+-++.+..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~-ypLg~Ga~Phgiv~gp--dg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET-YPLGSGASPHGIVVGP--DGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEE-EecCCCCCCceEEECC--CCCeeEecCcc-eeEEecCcccceE
Confidence 344677888899888888888888777888888643 3345556667788888 87766664433 3444444333322
Q ss_pred eeEEe--ecCCCceEEEEEcCCCCcEEEEEcCC---------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 142 ETKLL--GKHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 142 ~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
...+ ..-........|.+.| ++-+++... +.|++|+...+ ...+.|+
T Consensus 138 -~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaPqG--------------------~gpyGi~ 195 (353)
T COG4257 138 -RFPLPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAPQG--------------------GGPYGIC 195 (353)
T ss_pred -EeecccccCCCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccCCC--------------------CCCcceE
Confidence 1112 2234567788899998 566666421 23444433222 2356788
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (492)
..|+ +..-++.-.+..|...|...+... . + .........-+.+--+|.|+.-++.. .+.+..||.
T Consensus 196 atpd-Gsvwyaslagnaiaridp~~~~ae-v--~----------p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 196 ATPD-GSVWYASLAGNAIARIDPFAGHAE-V--V----------PQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred ECCC-CcEEEEeccccceEEcccccCCcc-e--e----------cCCCcccccccccccCccCcEEEeccCCceeeEeCc
Confidence 8898 566666666677777776655211 0 0 00111122344455567777666544 456777776
Q ss_pred CC
Q 011160 290 DM 291 (492)
Q Consensus 290 ~~ 291 (492)
..
T Consensus 262 s~ 263 (353)
T COG4257 262 SV 263 (353)
T ss_pred cc
Confidence 54
No 500
>PLN02153 epithiospecifier protein
Probab=82.93 E-value=37 Score=30.95 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=53.3
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeee-ccC---cCcc-eEEEEecCCCCCceEEeecCC-----------CcE
Q 011160 72 DGDILISGSDD-----RRVILWDWKTERVKLSF-HSG---HNDN-VFQAKIMPFTDDRSIVTCAAD-----------GQV 130 (492)
Q Consensus 72 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~-~~~---~~~~-v~~~~~~~~~~~~~l~~~~~d-----------g~v 130 (492)
++++++.|+.+ ..+.+||..+.+-...- +.. .... -.+++.. ++++++.|+.+ ..|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD---ENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE---CCEEEEECCccCCCccCCCcccceE
Confidence 46677777753 35778888765432110 000 1111 1222222 56777777753 246
Q ss_pred EEEecccCCeeeeEEeec--CCCceEEEEEcCCCCcEEEEEcCC-------------CcEEEEeCCCCCccc
Q 011160 131 RHAQILERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGED-------------GLVQHFDLRTGAATE 187 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~ 187 (492)
.+||..+........... ....-.+++. -++ ++++.++.+ ..+.+||+.+.+...
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECC-eEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 778887665433211100 0111112222 234 455555432 458889988876553
Done!