Query 011160
Match_columns 492
No_of_seqs 720 out of 3039
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 22:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 3.4E-51 1.2E-55 401.2 35.4 381 3-418 64-569 (611)
2 1nr0_A Actin interacting prote 100.0 5.4E-50 1.8E-54 392.7 36.6 333 3-415 152-610 (611)
3 1vyh_C Platelet-activating fac 100.0 1.4E-49 4.7E-54 370.6 35.6 289 53-414 100-409 (410)
4 1got_B GT-beta; complex (GTP-b 100.0 1.6E-48 5.4E-53 354.6 39.3 294 50-413 44-340 (340)
5 3ow8_A WD repeat-containing pr 100.0 1.4E-48 4.7E-53 351.2 36.6 290 53-414 24-319 (321)
6 2ynn_A Coatomer subunit beta'; 100.0 3.9E-48 1.3E-52 346.2 36.4 296 50-417 2-303 (304)
7 3iz6_a 40S ribosomal protein R 100.0 5E-49 1.7E-53 363.4 31.1 307 51-418 56-377 (380)
8 2pbi_B Guanine nucleotide-bind 100.0 1.5E-47 5.1E-52 349.6 38.2 294 52-413 55-354 (354)
9 4g56_B MGC81050 protein; prote 100.0 5.2E-48 1.8E-52 352.8 34.0 292 57-417 38-344 (357)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 5E-47 1.7E-51 345.2 37.4 321 50-420 4-339 (345)
11 4gqb_B Methylosome protein 50; 100.0 8.1E-48 2.8E-52 348.4 31.1 297 2-420 34-335 (344)
12 2ymu_A WD-40 repeat protein; u 100.0 4.4E-47 1.5E-51 371.6 38.7 310 3-413 267-577 (577)
13 4ery_A WD repeat-containing pr 100.0 2E-46 6.9E-51 337.1 39.1 296 51-415 13-311 (312)
14 2ymu_A WD-40 repeat protein; u 100.0 6.9E-47 2.4E-51 370.2 38.0 336 3-447 226-562 (577)
15 2pm9_A Protein WEB1, protein t 100.0 1.5E-47 5.1E-52 359.4 30.4 335 2-417 16-415 (416)
16 1vyh_C Platelet-activating fac 100.0 7.7E-47 2.6E-51 352.1 32.4 277 3-372 113-409 (410)
17 3frx_A Guanine nucleotide-bind 100.0 8.5E-46 2.9E-50 333.2 36.6 293 50-417 6-318 (319)
18 1erj_A Transcriptional repress 100.0 1.9E-45 6.5E-50 341.1 37.8 304 59-417 62-390 (393)
19 1r5m_A SIR4-interacting protei 100.0 8.5E-46 2.9E-50 348.5 35.6 326 3-415 50-424 (425)
20 3ow8_A WD repeat-containing pr 100.0 2.1E-45 7.2E-50 330.4 33.9 273 9-373 47-320 (321)
21 2xzm_R RACK1; ribosome, transl 100.0 6.1E-45 2.1E-49 331.5 36.8 298 49-418 9-342 (343)
22 1gxr_A ESG1, transducin-like e 100.0 1.3E-44 4.5E-49 329.4 35.3 317 3-414 14-335 (337)
23 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-45 1.1E-49 389.2 36.0 397 4-446 621-1190(1249)
24 1got_B GT-beta; complex (GTP-b 100.0 7.3E-45 2.5E-49 330.4 33.3 277 3-371 60-340 (340)
25 3vl1_A 26S proteasome regulato 100.0 1.3E-44 4.6E-49 339.7 34.9 331 3-416 61-419 (420)
26 4g56_B MGC81050 protein; prote 100.0 3E-45 1E-49 334.6 29.5 288 2-376 46-345 (357)
27 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-44 1E-48 326.9 34.6 316 3-381 21-342 (345)
28 2hes_X YDR267CP; beta-propelle 100.0 4.5E-44 1.5E-48 323.6 35.2 303 51-416 4-328 (330)
29 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-44 6.3E-49 365.6 35.2 208 3-239 22-246 (902)
30 3frx_A Guanine nucleotide-bind 100.0 2.9E-44 1E-48 323.2 32.0 290 4-375 23-318 (319)
31 2ynn_A Coatomer subunit beta'; 100.0 4.5E-44 1.5E-48 319.8 32.5 281 3-374 18-302 (304)
32 4aow_A Guanine nucleotide-bind 100.0 4.3E-43 1.5E-47 319.8 38.6 296 50-418 27-339 (340)
33 1pgu_A Actin interacting prote 100.0 8.8E-44 3E-48 351.1 34.6 379 3-447 23-597 (615)
34 2xzm_R RACK1; ribosome, transl 100.0 3.6E-43 1.2E-47 319.8 35.9 296 7-376 36-342 (343)
35 2pbi_B Guanine nucleotide-bind 100.0 1.5E-43 5.2E-48 323.1 32.4 278 3-371 69-354 (354)
36 2j04_B YDR362CP, TAU91; beta p 100.0 3.7E-44 1.3E-48 340.1 27.4 322 7-417 170-518 (524)
37 3iz6_a 40S ribosomal protein R 100.0 4.5E-44 1.5E-48 330.3 26.1 295 3-376 71-377 (380)
38 1sq9_A Antiviral protein SKI8; 100.0 1.2E-42 4E-47 324.0 34.5 299 51-418 6-397 (397)
39 1pgu_A Actin interacting prote 100.0 1.1E-42 3.7E-47 343.3 34.9 377 3-416 69-614 (615)
40 3sfz_A APAF-1, apoptotic pepti 100.0 9.4E-43 3.2E-47 370.2 36.8 391 3-422 662-1213(1249)
41 3zwl_B Eukaryotic translation 100.0 1.1E-41 3.9E-46 314.0 37.5 303 52-419 23-349 (369)
42 2oaj_A Protein SNI1; WD40 repe 100.0 2E-42 7E-47 350.7 34.9 384 3-419 63-667 (902)
43 3dm0_A Maltose-binding peripla 100.0 6E-42 2E-46 341.4 36.9 294 51-415 372-692 (694)
44 4e54_B DNA damage-binding prot 100.0 2E-42 6.7E-47 325.5 31.5 319 52-420 110-434 (435)
45 4a11_B DNA excision repair pro 100.0 1.4E-41 4.6E-46 318.0 35.8 333 18-421 21-370 (408)
46 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-41 5.5E-46 320.8 36.1 306 6-417 125-443 (445)
47 4ery_A WD repeat-containing pr 100.0 1.6E-41 5.6E-46 305.1 34.2 278 3-373 28-311 (312)
48 3ei3_B DNA damage-binding prot 100.0 1.8E-41 6.2E-46 314.2 34.8 314 50-416 62-382 (383)
49 1erj_A Transcriptional repress 100.0 1E-41 3.5E-46 316.0 33.1 313 3-374 69-389 (393)
50 3i2n_A WD repeat-containing pr 100.0 1E-41 3.4E-46 312.9 32.7 295 55-418 12-355 (357)
51 2pm9_A Protein WEB1, protein t 100.0 4.2E-42 1.4E-46 322.3 30.5 302 60-421 11-342 (416)
52 3gre_A Serine/threonine-protei 100.0 2.3E-42 7.9E-47 326.0 27.6 337 5-413 34-437 (437)
53 3odt_A Protein DOA1; ubiquitin 100.0 5.9E-41 2E-45 301.9 34.9 295 50-422 7-302 (313)
54 2hes_X YDR267CP; beta-propelle 100.0 3.1E-41 1.1E-45 305.0 31.3 290 5-374 21-328 (330)
55 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-41 5.8E-46 313.3 30.1 309 57-418 4-363 (372)
56 3v7d_B Cell division control p 100.0 5.5E-41 1.9E-45 319.2 33.5 310 7-414 129-461 (464)
57 1r5m_A SIR4-interacting protei 100.0 4.7E-41 1.6E-45 316.1 31.9 296 58-418 42-363 (425)
58 4aow_A Guanine nucleotide-bind 100.0 1E-40 3.4E-45 304.1 32.0 295 3-376 43-339 (340)
59 4gga_A P55CDC, cell division c 100.0 3.8E-40 1.3E-44 308.6 36.7 282 5-418 112-397 (420)
60 3k26_A Polycomb protein EED; W 100.0 4.3E-41 1.5E-45 309.8 29.2 319 56-416 13-366 (366)
61 4gqb_B Methylosome protein 50; 100.0 5.6E-41 1.9E-45 303.6 29.1 244 3-293 87-333 (344)
62 3dwl_C Actin-related protein 2 100.0 9.2E-42 3.2E-46 315.5 24.1 250 2-291 15-281 (377)
63 3mkq_A Coatomer beta'-subunit; 100.0 2E-40 6.8E-45 337.7 34.6 320 3-416 18-386 (814)
64 3dm0_A Maltose-binding peripla 100.0 5.9E-40 2E-44 327.1 35.6 302 4-373 388-692 (694)
65 2pm7_B Protein transport prote 100.0 7.2E-40 2.5E-44 291.6 32.2 270 55-416 3-285 (297)
66 4h5i_A Guanine nucleotide-exch 100.0 1.3E-40 4.4E-45 304.7 27.9 289 61-417 14-344 (365)
67 1k8k_C P40, ARP2/3 complex 41 100.0 5.2E-40 1.8E-44 303.3 30.6 318 2-376 12-363 (372)
68 4ggc_A P55CDC, cell division c 100.0 6.6E-39 2.3E-43 289.2 36.5 282 4-417 31-316 (318)
69 3dw8_B Serine/threonine-protei 100.0 3.3E-39 1.1E-43 305.6 35.9 297 59-414 26-444 (447)
70 3mkq_A Coatomer beta'-subunit; 100.0 2.6E-39 8.9E-44 329.5 35.0 298 50-418 2-304 (814)
71 4e54_B DNA damage-binding prot 100.0 4.5E-40 1.5E-44 309.5 26.6 301 4-378 125-434 (435)
72 3mmy_A MRNA export factor; mRN 100.0 4.7E-39 1.6E-43 296.4 32.9 298 50-416 28-346 (368)
73 1yfq_A Cell cycle arrest prote 100.0 5.7E-39 2E-43 292.7 32.2 290 55-414 5-322 (342)
74 1gxr_A ESG1, transducin-like e 100.0 1.5E-38 5.2E-43 289.3 34.9 277 3-372 56-335 (337)
75 4aez_A CDC20, WD repeat-contai 100.0 5.2E-39 1.8E-43 299.1 32.0 288 57-421 87-385 (401)
76 3bg1_A Protein SEC13 homolog; 100.0 1E-39 3.5E-44 293.2 26.1 275 55-416 7-293 (316)
77 4aez_A CDC20, WD repeat-contai 100.0 7.5E-39 2.6E-43 298.0 32.6 281 9-382 102-388 (401)
78 4a11_B DNA excision repair pro 100.0 2.1E-38 7.2E-43 296.4 34.2 342 3-415 48-404 (408)
79 3zwl_B Eukaryotic translation 100.0 1.5E-38 5.1E-43 293.2 32.6 283 3-379 37-351 (369)
80 3ei3_B DNA damage-binding prot 100.0 1E-38 3.6E-43 295.6 31.2 294 3-374 78-382 (383)
81 1sq9_A Antiviral protein SKI8; 100.0 2.8E-39 9.6E-44 301.1 27.2 300 4-376 22-397 (397)
82 3vl1_A 26S proteasome regulato 100.0 4E-39 1.4E-43 302.4 27.9 298 63-419 58-368 (420)
83 3i2n_A WD repeat-containing pr 100.0 1E-38 3.4E-43 293.0 29.7 305 3-377 23-356 (357)
84 3v7d_B Cell division control p 100.0 1.1E-37 3.6E-42 296.5 33.8 295 53-421 113-426 (464)
85 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-37 4.9E-42 284.3 31.3 310 55-420 5-341 (351)
86 2pm7_B Protein transport prote 100.0 1.4E-37 4.8E-42 276.8 28.3 247 3-291 14-285 (297)
87 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.9E-37 2E-41 289.6 33.5 307 52-447 109-420 (445)
88 1p22_A F-BOX/WD-repeat protein 100.0 4.1E-37 1.4E-41 289.5 31.3 282 55-420 127-418 (435)
89 3k26_A Polycomb protein EED; W 100.0 8.5E-38 2.9E-42 287.8 26.1 310 4-373 24-365 (366)
90 3jrp_A Fusion protein of prote 100.0 3.4E-37 1.1E-41 285.2 29.8 261 54-417 4-288 (379)
91 4h5i_A Guanine nucleotide-exch 100.0 8.2E-38 2.8E-42 286.1 23.9 292 3-375 19-344 (365)
92 3odt_A Protein DOA1; ubiquitin 100.0 4.8E-37 1.6E-41 276.3 28.3 276 4-381 24-303 (313)
93 2j04_A TAU60, YPL007P, hypothe 100.0 3E-37 1E-41 284.7 25.2 296 2-405 19-350 (588)
94 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-37 1E-41 287.5 25.3 286 6-421 42-347 (402)
95 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-37 6.2E-42 294.4 23.3 283 10-373 225-516 (524)
96 3dw8_B Serine/threonine-protei 100.0 1.4E-36 4.7E-41 287.6 29.1 330 3-372 33-444 (447)
97 3bg1_A Protein SEC13 homolog; 100.0 4.6E-37 1.6E-41 275.9 23.5 203 3-235 18-247 (316)
98 3gre_A Serine/threonine-protei 100.0 4.7E-37 1.6E-41 289.7 24.3 330 3-371 68-437 (437)
99 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-36 1.2E-40 283.2 28.5 293 6-394 139-433 (435)
100 1l0q_A Surface layer protein; 100.0 1.2E-34 3.9E-39 269.3 38.5 313 10-420 2-346 (391)
101 3dwl_C Actin-related protein 2 100.0 1.3E-36 4.6E-41 280.9 20.9 265 57-416 7-281 (377)
102 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-35 4.1E-40 271.5 26.9 295 3-381 16-344 (351)
103 3vu4_A KMHSV2; beta-propeller 100.0 6E-35 2.1E-39 266.4 30.9 294 55-418 13-338 (355)
104 3bws_A Protein LP49; two-domai 100.0 1.6E-34 5.3E-39 272.3 34.7 286 55-416 117-432 (433)
105 2xyi_A Probable histone-bindin 100.0 8.6E-35 3E-39 272.9 31.8 260 101-418 125-412 (430)
106 3jro_A Fusion protein of prote 100.0 1.2E-35 4E-40 297.5 26.4 259 55-418 3-287 (753)
107 3lrv_A PRE-mRNA-splicing facto 100.0 7.5E-35 2.6E-39 265.1 29.2 276 68-416 43-333 (343)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.8E-34 1.3E-38 270.4 33.4 310 61-416 4-391 (450)
109 1yfq_A Cell cycle arrest prote 100.0 8.2E-35 2.8E-39 265.2 27.3 282 3-371 16-321 (342)
110 2j04_A TAU60, YPL007P, hypothe 100.0 2.2E-35 7.4E-40 272.4 23.4 280 60-415 14-296 (588)
111 4gq1_A NUP37; propeller, trans 100.0 7.4E-35 2.5E-39 269.7 25.6 276 59-415 87-388 (393)
112 3jrp_A Fusion protein of prote 100.0 2.9E-34 9.8E-39 265.5 27.0 250 3-291 16-287 (379)
113 3mmy_A MRNA export factor; mRN 100.0 3.3E-34 1.1E-38 264.0 25.9 289 3-373 44-345 (368)
114 3jro_A Fusion protein of prote 100.0 5.8E-34 2E-38 285.2 26.5 252 3-293 14-287 (753)
115 4gga_A P55CDC, cell division c 100.0 4.3E-33 1.5E-37 260.7 29.1 257 3-393 152-414 (420)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.2E-33 1.4E-37 263.3 29.1 317 3-373 9-390 (450)
117 2xyi_A Probable histone-bindin 100.0 3.5E-33 1.2E-37 262.0 27.9 266 56-375 123-411 (430)
118 1nir_A Nitrite reductase; hemo 100.0 4.3E-32 1.5E-36 259.8 34.9 338 6-422 145-520 (543)
119 1l0q_A Surface layer protein; 100.0 8E-32 2.7E-36 250.2 34.8 270 74-420 3-279 (391)
120 4gq1_A NUP37; propeller, trans 100.0 9.3E-34 3.2E-38 262.3 21.5 253 4-291 95-389 (393)
121 2w18_A PALB2, fancn, partner a 100.0 1.7E-32 5.8E-37 237.6 26.9 279 12-414 56-355 (356)
122 3bws_A Protein LP49; two-domai 100.0 5E-32 1.7E-36 255.2 32.2 280 3-374 127-432 (433)
123 3vu4_A KMHSV2; beta-propeller 100.0 7.1E-31 2.4E-35 239.4 30.8 263 87-418 3-273 (355)
124 2aq5_A Coronin-1A; WD40 repeat 100.0 5.8E-32 2E-36 251.8 23.4 248 3-292 86-343 (402)
125 3lrv_A PRE-mRNA-splicing facto 100.0 3.7E-32 1.3E-36 247.3 21.6 228 117-418 47-294 (343)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.9E-30 6.7E-35 241.3 29.1 290 11-398 76-410 (415)
127 4ggc_A P55CDC, cell division c 100.0 3E-30 1E-34 232.4 28.9 198 3-237 72-275 (318)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.5E-30 2.6E-34 237.3 24.9 290 60-425 61-396 (415)
129 1nir_A Nitrite reductase; hemo 100.0 2.1E-28 7.1E-33 234.3 29.8 320 68-452 144-496 (543)
130 2ecf_A Dipeptidyl peptidase IV 100.0 4.1E-29 1.4E-33 251.4 25.1 340 3-418 41-461 (741)
131 1k32_A Tricorn protease; prote 100.0 9E-28 3.1E-32 249.5 30.1 331 3-425 57-470 (1045)
132 1xfd_A DIP, dipeptidyl aminope 100.0 1.3E-27 4.3E-32 240.0 25.1 315 3-404 21-428 (723)
133 2w18_A PALB2, fancn, partner a 100.0 1.3E-27 4.6E-32 207.1 20.5 207 3-233 116-355 (356)
134 3u4y_A Uncharacterized protein 100.0 1.6E-25 5.4E-30 202.8 33.0 288 4-420 3-308 (331)
135 2z3z_A Dipeptidyl aminopeptida 100.0 1.7E-26 5.8E-31 231.1 27.9 331 10-418 35-437 (706)
136 1ri6_A Putative isomerase YBHE 100.0 1.4E-25 4.9E-30 204.1 30.4 311 11-398 6-335 (343)
137 2ecf_A Dipeptidyl peptidase IV 100.0 2.5E-26 8.6E-31 231.2 27.1 293 61-416 36-413 (741)
138 2ojh_A Uncharacterized protein 99.9 6.9E-26 2.3E-30 201.6 26.1 257 15-407 17-293 (297)
139 1k32_A Tricorn protease; prote 99.9 5.5E-26 1.9E-30 236.1 29.0 332 3-416 111-502 (1045)
140 1ri6_A Putative isomerase YBHE 99.9 4.9E-26 1.7E-30 207.2 25.0 283 75-415 7-307 (343)
141 1pby_B Quinohemoprotein amine 99.9 1.6E-25 5.3E-30 203.3 22.5 279 11-386 2-322 (337)
142 1pby_B Quinohemoprotein amine 99.9 3.1E-25 1.1E-29 201.3 24.5 271 74-420 2-314 (337)
143 3vgz_A Uncharacterized protein 99.9 5E-24 1.7E-28 194.7 31.5 278 60-407 39-335 (353)
144 3o4h_A Acylamino-acid-releasin 99.9 8.8E-25 3E-29 213.4 24.3 272 60-416 20-315 (582)
145 1xfd_A DIP, dipeptidyl aminope 99.9 2.5E-25 8.6E-30 223.3 20.7 299 63-416 18-393 (723)
146 1jmx_B Amine dehydrogenase; ox 99.9 7E-24 2.4E-28 193.4 28.4 287 4-384 5-335 (349)
147 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-24 5.9E-29 216.5 26.3 315 3-413 86-473 (706)
148 3hfq_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 191.1 29.9 290 81-422 14-325 (347)
149 1z68_A Fibroblast activation p 99.9 1.6E-24 5.5E-29 217.2 24.9 332 3-420 20-447 (719)
150 3hfq_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 185.2 28.6 263 59-378 37-323 (347)
151 3vgz_A Uncharacterized protein 99.9 4.9E-23 1.7E-27 188.1 26.3 270 4-365 46-335 (353)
152 1jmx_B Amine dehydrogenase; ox 99.9 9.3E-23 3.2E-27 186.0 27.3 297 66-420 4-329 (349)
153 3pe7_A Oligogalacturonate lyas 99.9 8.7E-23 3E-27 189.0 24.9 290 55-415 24-381 (388)
154 3scy_A Hypothetical bacterial 99.9 2.4E-21 8.4E-26 177.3 31.8 301 74-422 14-345 (361)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 4.9E-22 1.7E-26 185.2 27.2 217 4-237 42-280 (434)
156 3scy_A Hypothetical bacterial 99.9 1.9E-21 6.6E-26 178.0 29.7 301 10-394 13-360 (361)
157 3u4y_A Uncharacterized protein 99.9 7.3E-22 2.5E-26 178.6 25.4 246 4-292 45-305 (331)
158 2oiz_A Aromatic amine dehydrog 99.9 1.3E-21 4.4E-26 178.1 25.9 310 8-398 13-360 (361)
159 2ojh_A Uncharacterized protein 99.9 6.7E-22 2.3E-26 175.7 23.1 248 123-447 17-284 (297)
160 3o4h_A Acylamino-acid-releasin 99.9 1.2E-22 4.3E-27 198.2 19.9 263 3-374 26-315 (582)
161 1z68_A Fibroblast activation p 99.9 4.2E-22 1.4E-26 199.6 21.5 291 66-416 20-391 (719)
162 4a5s_A Dipeptidyl peptidase 4 99.9 5.4E-21 1.8E-25 191.5 27.5 330 3-419 21-452 (740)
163 2oit_A Nucleoporin 214KDA; NH2 99.9 7.4E-20 2.5E-24 170.5 28.9 166 3-184 97-280 (434)
164 1jof_A Carboxy-CIS,CIS-muconat 99.9 9.2E-20 3.2E-24 166.8 29.0 262 60-417 38-342 (365)
165 3pe7_A Oligogalacturonate lyas 99.9 5.4E-20 1.9E-24 170.2 25.5 238 4-292 41-330 (388)
166 3c5m_A Oligogalacturonate lyas 99.9 1.7E-20 5.9E-25 174.1 20.4 279 64-420 38-388 (396)
167 1qks_A Cytochrome CD1 nitrite 99.9 2.3E-18 7.8E-23 164.3 35.2 334 8-421 165-543 (567)
168 4a5s_A Dipeptidyl peptidase 4 99.8 6.6E-20 2.3E-24 183.6 20.3 298 63-425 18-362 (740)
169 3fvz_A Peptidyl-glycine alpha- 99.8 3.9E-18 1.3E-22 153.5 29.5 262 61-417 23-323 (329)
170 2oiz_A Aromatic amine dehydrog 99.8 2.4E-18 8.2E-23 156.5 26.7 269 81-417 29-335 (361)
171 2dg1_A DRP35, lactonase; beta 99.8 4.3E-17 1.5E-21 147.3 34.0 277 1-406 8-300 (333)
172 3azo_A Aminopeptidase; POP fam 99.8 1.1E-18 3.6E-23 173.3 24.8 322 5-413 30-408 (662)
173 3azo_A Aminopeptidase; POP fam 99.8 6.9E-19 2.4E-23 174.6 22.1 296 56-422 18-375 (662)
174 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.4E-19 2.2E-23 161.2 19.0 248 4-291 45-341 (365)
175 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-16 4.6E-21 140.6 32.3 246 58-417 26-281 (286)
176 3c5m_A Oligogalacturonate lyas 99.8 2.3E-18 8E-23 159.7 21.6 233 3-292 40-330 (396)
177 2gop_A Trilobed protease; beta 99.8 3E-17 1E-21 149.2 26.9 266 62-425 15-339 (347)
178 2z2n_A Virginiamycin B lyase; 99.8 4E-15 1.4E-19 132.1 37.1 285 58-418 11-297 (299)
179 2xdw_A Prolyl endopeptidase; a 99.8 2.3E-16 7.8E-21 157.4 30.3 251 59-418 122-416 (710)
180 3dsm_A Uncharacterized protein 99.8 5.6E-16 1.9E-20 139.1 29.4 287 17-393 14-319 (328)
181 1q7f_A NHL, brain tumor CG1071 99.8 3.2E-16 1.1E-20 138.2 27.4 243 4-291 35-280 (286)
182 1qks_A Cytochrome CD1 nitrite 99.8 7.6E-16 2.6E-20 146.9 31.8 283 71-417 165-478 (567)
183 2bkl_A Prolyl endopeptidase; m 99.8 1.1E-16 3.7E-21 159.2 26.5 252 59-422 118-403 (695)
184 3fvz_A Peptidyl-glycine alpha- 99.8 4.5E-16 1.6E-20 139.9 25.7 244 4-291 29-322 (329)
185 2mad_H Methylamine dehydrogena 99.8 5.8E-15 2E-19 134.1 32.6 292 6-422 28-356 (373)
186 3sjl_D Methylamine dehydrogena 99.8 1.5E-15 5.3E-20 135.6 28.0 304 5-396 39-384 (386)
187 2gop_A Trilobed protease; beta 99.7 5.5E-16 1.9E-20 140.9 25.3 260 9-386 23-341 (347)
188 3no2_A Uncharacterized protein 99.7 1E-15 3.5E-20 133.1 24.2 224 8-281 3-232 (276)
189 3dsm_A Uncharacterized protein 99.7 9.7E-16 3.3E-20 137.5 24.1 268 80-420 14-305 (328)
190 3e5z_A Putative gluconolactona 99.7 4.9E-15 1.7E-19 131.3 27.9 246 56-419 22-289 (296)
191 3sjl_D Methylamine dehydrogena 99.7 6.7E-15 2.3E-19 131.5 26.2 286 67-421 38-368 (386)
192 2qc5_A Streptogramin B lactona 99.7 3.2E-13 1.1E-17 119.8 36.4 281 59-415 17-299 (300)
193 1rwi_B Serine/threonine-protei 99.7 8.7E-15 3E-19 127.8 25.5 242 106-420 25-268 (270)
194 1rwi_B Serine/threonine-protei 99.7 2.3E-14 8E-19 125.0 26.5 240 63-376 25-266 (270)
195 2z2n_A Virginiamycin B lyase; 99.7 2.6E-13 9E-18 120.3 33.1 233 4-290 20-254 (299)
196 3c75_H MADH, methylamine dehyd 99.7 1.6E-14 5.4E-19 131.6 24.9 292 7-381 81-409 (426)
197 3e5z_A Putative gluconolactona 99.7 7.1E-15 2.4E-19 130.2 22.3 229 4-292 33-287 (296)
198 3no2_A Uncharacterized protein 99.7 1.9E-13 6.5E-18 118.8 29.1 219 72-404 4-231 (276)
199 2dg1_A DRP35, lactonase; beta 99.7 5.3E-14 1.8E-18 126.9 25.4 237 4-280 50-298 (333)
200 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-14 6.4E-19 143.6 23.6 240 4-293 130-416 (710)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 3.4E-13 1.2E-17 120.5 29.2 248 61-417 17-300 (314)
202 1yr2_A Prolyl oligopeptidase; 99.6 3.9E-14 1.3E-18 141.9 25.2 249 59-421 160-446 (741)
203 2bkl_A Prolyl endopeptidase; m 99.6 1.5E-14 5.2E-19 143.8 22.0 193 4-234 126-348 (695)
204 2qc5_A Streptogramin B lactona 99.6 1.7E-12 5.8E-17 115.1 32.4 234 4-290 25-259 (300)
205 2qe8_A Uncharacterized protein 99.6 2.3E-13 7.7E-18 123.0 22.0 277 62-413 17-318 (343)
206 3c75_H MADH, methylamine dehyd 99.6 9E-13 3.1E-17 120.1 25.3 291 71-421 82-407 (426)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.4E-12 4.8E-17 116.5 24.3 240 4-291 23-299 (314)
208 3hrp_A Uncharacterized protein 99.6 7.2E-12 2.5E-16 115.5 29.3 259 62-415 131-409 (409)
209 1mda_H Methylamine dehydrogena 99.5 5.3E-13 1.8E-17 119.7 20.4 291 11-395 33-366 (368)
210 3g4e_A Regucalcin; six bladed 99.5 2.6E-11 8.7E-16 107.1 30.9 234 60-404 11-260 (297)
211 1xip_A Nucleoporin NUP159; bet 99.5 2.3E-13 7.7E-18 122.3 14.5 181 63-280 39-232 (388)
212 3iuj_A Prolyl endopeptidase; h 99.5 4.5E-12 1.5E-16 125.7 25.3 250 58-421 125-410 (693)
213 1yiq_A Quinohemoprotein alcoho 99.5 4.8E-12 1.6E-16 124.5 23.3 362 10-401 70-533 (689)
214 3g4e_A Regucalcin; six bladed 99.5 1.5E-11 5.2E-16 108.6 23.7 220 9-280 24-260 (297)
215 2ghs_A AGR_C_1268P; regucalcin 99.5 2.4E-10 8.1E-15 102.3 31.4 229 63-405 50-291 (326)
216 1yr2_A Prolyl oligopeptidase; 99.5 2E-12 7E-17 129.4 19.8 238 4-293 168-443 (741)
217 1kb0_A Quinohemoprotein alcoho 99.5 1.4E-11 4.8E-16 121.0 24.6 378 10-416 77-567 (677)
218 2mad_H Methylamine dehydrogena 99.5 6.9E-11 2.4E-15 107.3 27.2 250 4-294 71-353 (373)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.1E-10 7.3E-15 105.1 30.0 316 10-413 53-375 (376)
220 1mda_H Methylamine dehydrogena 99.4 1.1E-11 3.7E-16 111.2 20.5 268 84-421 47-351 (368)
221 3hxj_A Pyrrolo-quinoline quino 99.4 1E-11 3.4E-16 111.8 20.2 296 11-418 31-326 (330)
222 3dr2_A Exported gluconolactona 99.4 9E-11 3.1E-15 104.1 25.7 234 103-410 43-301 (305)
223 3hrp_A Uncharacterized protein 99.4 6E-11 2.1E-15 109.3 24.1 256 5-289 137-408 (409)
224 1xip_A Nucleoporin NUP159; bet 99.4 3.6E-12 1.2E-16 114.5 15.4 184 5-221 44-230 (388)
225 3dr2_A Exported gluconolactona 99.4 1.3E-10 4.5E-15 103.0 23.8 235 57-367 40-300 (305)
226 3iuj_A Prolyl endopeptidase; h 99.4 1.5E-11 5.1E-16 122.0 19.1 236 3-292 133-406 (693)
227 2ghs_A AGR_C_1268P; regucalcin 99.4 4E-10 1.4E-14 100.8 24.6 221 6-280 56-290 (326)
228 1yiq_A Quinohemoprotein alcoho 99.3 9.4E-10 3.2E-14 108.3 24.2 330 73-420 70-509 (689)
229 2hz6_A Endoplasmic reticulum t 99.3 8.6E-13 2.9E-17 120.1 2.0 186 9-240 8-197 (369)
230 2ece_A 462AA long hypothetical 99.3 6.5E-09 2.2E-13 93.6 26.5 241 117-404 94-399 (462)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.2E-08 3.9E-13 93.5 29.0 279 73-420 53-341 (376)
232 2qe8_A Uncharacterized protein 99.3 9.3E-11 3.2E-15 105.8 14.6 237 105-419 17-281 (343)
233 1npe_A Nidogen, entactin; glyc 99.2 1.5E-08 5.2E-13 87.7 28.0 252 74-398 2-263 (267)
234 1fwx_A Nitrous oxide reductase 99.2 2E-09 7E-14 100.4 23.4 257 117-420 100-435 (595)
235 1kb0_A Quinohemoprotein alcoho 99.2 2.4E-09 8.3E-14 105.2 23.7 324 73-420 77-511 (677)
236 4a2l_A BT_4663, two-component 99.2 7.8E-08 2.7E-12 97.2 34.8 299 64-420 175-484 (795)
237 2ece_A 462AA long hypothetical 99.2 4.9E-09 1.7E-13 94.4 22.8 251 8-280 93-399 (462)
238 1kv9_A Type II quinohemoprotei 99.2 6.7E-09 2.3E-13 102.0 24.7 213 10-240 66-338 (668)
239 2hz6_A Endoplasmic reticulum t 99.2 5.6E-11 1.9E-15 108.1 9.0 142 72-237 8-151 (369)
240 2iwa_A Glutamine cyclotransfer 99.1 3E-08 1E-12 83.9 22.7 204 5-236 27-238 (266)
241 4a2l_A BT_4663, two-component 99.1 1.3E-06 4.3E-11 88.4 38.6 297 61-420 262-575 (795)
242 3hxj_A Pyrrolo-quinoline quino 99.1 3E-09 1E-13 95.5 16.2 260 66-415 24-283 (330)
243 1w6s_A Methanol dehydrogenase 99.1 7.7E-08 2.6E-12 92.3 25.6 215 11-242 63-349 (599)
244 1fwx_A Nitrous oxide reductase 99.1 3.1E-09 1E-13 99.2 15.4 249 8-293 99-433 (595)
245 2iwa_A Glutamine cyclotransfer 99.0 2.2E-07 7.5E-12 78.6 24.9 224 50-291 8-237 (266)
246 2ad6_A Methanol dehydrogenase 99.0 3E-08 1E-12 95.3 21.9 164 73-243 115-343 (571)
247 3nol_A Glutamine cyclotransfer 99.0 3.1E-07 1E-11 76.6 23.7 219 49-289 29-252 (262)
248 2fp8_A Strictosidine synthase; 99.0 5.7E-07 2E-11 80.1 27.2 101 64-168 21-143 (322)
249 1flg_A Protein (quinoprotein e 99.0 2.4E-07 8.3E-12 89.1 25.8 169 73-243 117-363 (582)
250 3v9f_A Two-component system se 99.0 2.2E-06 7.4E-11 86.5 33.7 293 61-421 257-573 (781)
251 1npe_A Nidogen, entactin; glyc 99.0 1.7E-06 5.7E-11 74.8 28.3 199 62-292 36-239 (267)
252 3nol_A Glutamine cyclotransfer 99.0 3.6E-08 1.2E-12 82.2 16.3 184 9-222 52-243 (262)
253 3nok_A Glutaminyl cyclase; bet 98.9 4.4E-08 1.5E-12 81.6 16.2 185 9-223 64-254 (268)
254 2p4o_A Hypothetical protein; p 98.9 1.1E-05 3.7E-10 71.2 31.5 123 53-183 24-148 (306)
255 1kv9_A Type II quinohemoprotei 98.9 2.3E-07 8E-12 91.1 22.3 328 73-420 66-492 (668)
256 3v9f_A Two-component system se 98.9 3.1E-05 1.1E-09 78.1 37.6 294 62-420 211-528 (781)
257 3nok_A Glutaminyl cyclase; bet 98.8 8E-07 2.7E-11 74.1 20.0 210 52-282 44-255 (268)
258 3qqz_A Putative uncharacterize 98.8 3.9E-06 1.3E-10 70.6 24.4 221 55-289 20-251 (255)
259 3mbr_X Glutamine cyclotransfer 98.8 1.2E-06 4E-11 72.5 20.0 185 10-223 31-223 (243)
260 3v64_C Agrin; beta propeller, 98.8 2.4E-05 8.4E-10 70.1 30.5 254 64-392 36-293 (349)
261 3mbr_X Glutamine cyclotransfer 98.8 3.6E-06 1.2E-10 69.6 22.8 219 51-289 9-231 (243)
262 2ad6_A Methanol dehydrogenase 98.8 1.2E-06 4.1E-11 84.2 22.6 331 73-420 62-498 (571)
263 1w6s_A Methanol dehydrogenase 98.8 1.4E-06 4.9E-11 83.6 22.8 213 73-297 62-348 (599)
264 3v65_B Low-density lipoprotein 98.8 1.4E-05 4.9E-10 72.8 28.1 253 66-393 81-337 (386)
265 1ijq_A LDL receptor, low-densi 98.8 3.3E-05 1.1E-09 68.3 29.4 237 75-383 3-247 (316)
266 1k3i_A Galactose oxidase precu 98.7 6.7E-07 2.3E-11 88.0 20.0 245 9-292 197-498 (656)
267 2p4o_A Hypothetical protein; p 98.7 8.9E-06 3.1E-10 71.7 24.1 223 5-280 38-276 (306)
268 3p5b_L Low density lipoprotein 98.7 8.8E-05 3E-09 67.8 30.7 247 75-392 85-338 (400)
269 1k3i_A Galactose oxidase precu 98.6 5.7E-06 1.9E-10 81.4 23.3 117 66-186 190-327 (656)
270 3v65_B Low-density lipoprotein 98.6 4.6E-05 1.6E-09 69.5 27.2 200 62-292 116-319 (386)
271 2xe4_A Oligopeptidase B; hydro 98.6 5.3E-06 1.8E-10 82.8 22.7 192 4-232 179-395 (751)
272 1flg_A Protein (quinoprotein e 98.6 1.4E-05 4.9E-10 76.8 24.8 333 74-420 69-520 (582)
273 3v64_C Agrin; beta propeller, 98.6 0.00012 4.2E-09 65.6 28.6 221 128-418 53-277 (349)
274 3s94_A LRP-6, low-density lipo 98.6 0.00067 2.3E-08 65.7 34.3 160 62-238 84-246 (619)
275 3sov_A LRP-6, low-density lipo 98.5 0.00012 4E-09 64.6 26.5 238 75-384 6-248 (318)
276 3qqz_A Putative uncharacterize 98.5 8.4E-05 2.9E-09 62.5 23.6 221 144-414 20-251 (255)
277 2xe4_A Oligopeptidase B; hydro 98.5 4E-05 1.4E-09 76.6 24.7 116 106-236 175-305 (751)
278 3sov_A LRP-6, low-density lipo 98.5 0.00026 9E-09 62.4 27.0 203 62-293 35-240 (318)
279 2xbg_A YCF48-like protein; pho 98.5 0.00061 2.1E-08 60.5 30.1 274 61-414 35-320 (327)
280 3m0c_C LDL receptor, low-densi 98.5 0.00027 9.4E-09 70.1 29.2 187 75-291 397-589 (791)
281 1ijq_A LDL receptor, low-densi 98.4 0.00043 1.5E-08 61.1 27.8 204 62-293 30-240 (316)
282 3tc9_A Hypothetical hydrolase; 98.4 0.00026 9E-09 65.4 27.3 157 63-234 138-300 (430)
283 4hw6_A Hypothetical protein, I 98.4 0.00017 6E-09 66.6 26.0 157 63-234 140-303 (433)
284 2fp8_A Strictosidine synthase; 98.4 5.9E-05 2E-09 67.0 22.2 253 4-291 24-313 (322)
285 1n7d_A LDL receptor, low-densi 98.4 3.4E-06 1.2E-10 83.1 15.0 241 82-394 385-634 (699)
286 3kya_A Putative phosphatase; s 98.4 0.00032 1.1E-08 65.0 26.9 276 106-420 140-479 (496)
287 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0024 8.2E-08 61.9 31.3 233 75-381 8-244 (628)
288 4hw6_A Hypothetical protein, I 98.3 0.00085 2.9E-08 62.0 27.0 225 60-290 180-432 (433)
289 3p5b_L Low density lipoprotein 98.3 0.0025 8.7E-08 58.2 31.1 206 60-292 110-321 (400)
290 3ei3_A DNA damage-binding prot 98.2 0.0048 1.6E-07 64.2 33.3 192 61-280 553-755 (1158)
291 3kya_A Putative phosphatase; s 98.1 0.0025 8.4E-08 59.1 26.0 160 63-234 140-340 (496)
292 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0034 1.1E-07 60.9 27.8 229 120-419 8-240 (628)
293 3m0c_C LDL receptor, low-densi 98.1 0.0039 1.4E-07 61.9 28.4 162 61-236 423-590 (791)
294 2xzh_A Clathrin heavy chain 1; 98.1 0.0036 1.2E-07 53.7 28.2 271 81-419 47-335 (365)
295 2xbg_A YCF48-like protein; pho 98.0 0.0057 2E-07 54.1 30.0 196 61-291 79-278 (327)
296 3s94_A LRP-6, low-density lipo 98.0 0.014 4.7E-07 56.6 33.8 201 151-418 349-553 (619)
297 1n7d_A LDL receptor, low-densi 98.0 7.9E-05 2.7E-09 73.4 13.9 221 128-419 386-617 (699)
298 2p9w_A MAL S 1 allergenic prot 97.9 0.001 3.4E-08 57.6 17.8 162 65-235 16-215 (334)
299 3amr_A 3-phytase; beta-propell 97.9 0.0027 9.1E-08 55.5 20.0 188 72-290 39-262 (355)
300 3amr_A 3-phytase; beta-propell 97.9 0.0036 1.2E-07 54.8 20.3 191 8-234 38-262 (355)
301 2p9w_A MAL S 1 allergenic prot 97.8 0.0014 4.7E-08 56.8 16.3 163 206-416 15-215 (334)
302 3sre_A PON1, serum paraoxonase 97.8 0.0075 2.6E-07 53.5 21.4 141 126-291 81-252 (355)
303 2ism_A Putative oxidoreductase 97.7 0.021 7.1E-07 51.1 24.3 108 105-222 31-152 (352)
304 1bpo_A Protein (clathrin); cla 97.7 0.027 9.2E-07 50.5 30.5 271 81-419 46-334 (494)
305 3tc9_A Hypothetical hydrolase; 97.7 0.0017 5.7E-08 60.0 16.5 154 205-416 138-301 (430)
306 2xzh_A Clathrin heavy chain 1; 97.6 0.028 9.4E-07 48.4 21.5 206 2-239 70-294 (365)
307 2g8s_A Glucose/sorbosone dehyd 97.5 0.044 1.5E-06 49.0 25.3 68 345-414 273-350 (353)
308 3a9g_A Putative uncharacterize 97.5 0.014 4.8E-07 52.2 19.4 239 5-280 35-330 (354)
309 2g8s_A Glucose/sorbosone dehyd 97.5 0.05 1.7E-06 48.6 25.3 115 63-182 19-173 (353)
310 2vpj_A Kelch-like protein 12; 97.5 0.022 7.6E-07 49.6 20.4 150 72-238 62-234 (301)
311 3ei3_A DNA damage-binding prot 97.5 0.15 5E-06 53.3 33.2 177 175-416 809-999 (1158)
312 2xn4_A Kelch-like protein 2; s 97.4 0.058 2E-06 47.0 23.0 108 73-186 16-137 (302)
313 1bpo_A Protein (clathrin); cla 97.3 0.066 2.2E-06 48.1 20.9 206 2-239 69-293 (494)
314 2ism_A Putative oxidoreductase 97.3 0.086 3E-06 47.0 28.7 102 63-170 32-153 (352)
315 3sre_A PON1, serum paraoxonase 97.3 0.044 1.5E-06 48.6 19.4 144 18-182 81-252 (355)
316 1zgk_A Kelch-like ECH-associat 97.2 0.048 1.6E-06 47.7 19.4 150 72-239 70-244 (308)
317 4asc_A Kelch repeat and BTB do 97.2 0.081 2.8E-06 46.3 20.8 104 120-238 7-129 (315)
318 3ii7_A Kelch-like protein 7; p 97.1 0.11 3.8E-06 45.2 22.8 147 74-238 13-181 (306)
319 3ii7_A Kelch-like protein 7; p 97.1 0.053 1.8E-06 47.3 18.8 149 72-237 101-274 (306)
320 2vpj_A Kelch-like protein 12; 97.1 0.069 2.4E-06 46.4 19.5 149 72-237 112-280 (301)
321 1xi4_A Clathrin heavy chain; a 97.1 0.1 3.6E-06 54.3 22.2 270 81-418 46-333 (1630)
322 2xn4_A Kelch-like protein 2; s 97.1 0.048 1.6E-06 47.5 17.9 150 72-238 108-279 (302)
323 3pbp_A Nucleoporin NUP82; beta 97.1 0.11 3.9E-06 46.5 19.7 157 70-232 29-209 (452)
324 3das_A Putative oxidoreductase 97.1 0.14 4.9E-06 45.1 30.1 107 61-170 31-158 (347)
325 1tl2_A L10, protein (tachylect 97.1 0.044 1.5E-06 44.2 15.4 151 117-286 3-158 (236)
326 1tl2_A L10, protein (tachylect 97.0 0.046 1.6E-06 44.1 15.2 158 205-414 42-206 (236)
327 3pbp_A Nucleoporin NUP82; beta 97.0 0.047 1.6E-06 48.9 16.2 114 63-179 67-209 (452)
328 4asc_A Kelch repeat and BTB do 96.9 0.21 7.1E-06 43.7 21.6 146 75-238 7-177 (315)
329 3das_A Putative oxidoreductase 96.7 0.28 9.5E-06 43.3 23.7 245 4-280 37-326 (347)
330 1zgk_A Kelch-like ECH-associat 96.7 0.14 4.8E-06 44.7 17.4 149 72-237 121-289 (308)
331 3a9g_A Putative uncharacterize 96.6 0.35 1.2E-05 43.1 29.6 104 62-170 29-153 (354)
332 2woz_A Kelch repeat and BTB do 96.6 0.34 1.2E-05 42.4 21.3 146 75-238 18-187 (318)
333 1xi4_A Clathrin heavy chain; a 96.5 0.22 7.4E-06 52.1 19.5 208 2-240 69-294 (1630)
334 2woz_A Kelch repeat and BTB do 96.5 0.37 1.3E-05 42.2 19.9 104 120-238 18-139 (318)
335 1cru_A Protein (soluble quinop 96.2 0.81 2.8E-05 42.3 31.9 105 63-170 28-162 (454)
336 2zwa_A Leucine carboxyl methyl 96.0 0.71 2.4E-05 45.5 20.0 111 72-184 451-579 (695)
337 2be1_A Serine/threonine-protei 96.0 0.12 4.2E-06 45.3 12.9 200 10-238 10-234 (339)
338 1cru_A Protein (soluble quinop 96.0 0.96 3.3E-05 41.8 30.5 110 105-223 27-162 (454)
339 2uvk_A YJHT; unknown function, 96.0 0.29 1E-05 43.7 15.9 140 83-238 168-345 (357)
340 3sbq_A Nitrous-oxide reductase 95.9 1.1 3.7E-05 41.9 22.4 113 263-405 324-454 (638)
341 2be1_A Serine/threonine-protei 95.8 0.31 1E-05 42.8 14.3 116 74-191 11-139 (339)
342 2zwa_A Leucine carboxyl methyl 95.7 1.6 5.6E-05 42.9 20.8 155 117-292 397-578 (695)
343 3s25_A Hypothetical 7-bladed b 95.5 1.1 3.8E-05 38.7 22.8 172 71-291 23-216 (302)
344 2uvk_A YJHT; unknown function, 95.5 1.3 4.4E-05 39.4 19.7 95 72-172 19-128 (357)
345 3ott_A Two-component system se 95.2 2.8 9.7E-05 41.8 36.0 285 63-420 104-405 (758)
346 3q6k_A 43.2 kDa salivary prote 95.1 1.7 6E-05 38.7 17.6 189 174-403 124-341 (381)
347 3ott_A Two-component system se 94.8 3.6 0.00012 41.0 37.8 301 61-421 231-550 (758)
348 3s25_A Hypothetical 7-bladed b 90.2 8.4 0.00029 33.2 21.7 178 67-291 58-255 (302)
349 3qhy_B Beta-lactamase inhibito 88.5 11 0.00037 32.1 26.1 229 105-422 24-252 (282)
350 3sbq_A Nitrous-oxide reductase 88.0 0.34 1.2E-05 45.1 3.5 78 151-236 323-409 (638)
351 2wg3_C Hedgehog-interacting pr 87.7 17 0.00057 33.6 14.6 28 263-290 15-44 (463)
352 3b7f_A Glycosyl hydrolase, BNR 86.1 19 0.00063 32.3 30.1 160 61-226 54-254 (394)
353 4gq2_M Nucleoporin NUP120; bet 86.0 7.9 0.00027 39.6 12.6 38 62-99 236-273 (950)
354 4hvt_A Ritya.17583.B, post-pro 84.3 33 0.0011 33.7 19.9 29 6-34 137-170 (711)
355 4gq2_M Nucleoporin NUP120; bet 83.1 21 0.00074 36.5 14.2 39 152-191 237-275 (950)
356 3qhy_B Beta-lactamase inhibito 82.2 22 0.00076 30.1 24.8 183 63-291 25-207 (282)
357 2wg3_C Hedgehog-interacting pr 82.0 31 0.0011 31.7 28.6 106 63-171 15-158 (463)
358 4hvt_A Ritya.17583.B, post-pro 75.1 66 0.0023 31.6 24.6 207 63-292 130-382 (711)
359 3zwu_A Alkaline phosphatase PH 71.0 18 0.00062 34.5 8.9 57 346-403 479-548 (592)
360 3uc1_A DNA gyrase subunit A; D 70.8 52 0.0018 28.5 19.0 155 9-181 108-278 (327)
361 4fhn_B Nucleoporin NUP120; pro 69.9 5.8 0.0002 41.7 5.9 37 63-99 239-275 (1139)
362 3b7f_A Glycosyl hydrolase, BNR 68.6 64 0.0022 28.7 28.6 209 74-288 23-259 (394)
363 4a9v_A PHOX; hydrolase, beta-p 65.5 32 0.0011 32.5 9.1 58 345-403 478-548 (592)
364 3mvd_K Regulator of chromosome 61.5 93 0.0032 28.1 29.8 171 106-291 76-271 (423)
365 1sqj_A OXG-RCBH, oligoxylogluc 61.0 1.4E+02 0.0047 29.9 17.7 158 61-225 14-190 (789)
366 3zwu_A Alkaline phosphatase PH 60.5 35 0.0012 32.6 8.6 58 64-124 478-548 (592)
367 3kci_A Probable E3 ubiquitin-p 55.2 1.1E+02 0.0039 27.1 27.9 213 63-291 106-345 (389)
368 4fhn_B Nucleoporin NUP120; pro 54.7 13 0.00045 39.1 5.2 37 345-382 240-276 (1139)
369 3f7f_A Nucleoporin NUP120; nuc 54.6 22 0.00075 34.6 6.2 36 62-99 222-257 (729)
370 3q6k_A 43.2 kDa salivary prote 54.5 1.2E+02 0.004 27.0 21.6 168 62-235 87-306 (381)
371 4a9v_A PHOX; hydrolase, beta-p 52.7 74 0.0025 30.1 9.2 60 62-124 476-548 (592)
372 3f7f_A Nucleoporin NUP120; nuc 46.9 2.2E+02 0.0075 27.9 18.4 36 345-383 224-259 (729)
373 3uc1_A DNA gyrase subunit A; D 39.2 1.9E+02 0.0065 25.0 28.9 255 9-291 2-279 (327)
374 2cn3_A Xyloglucanase, beta-1,4 33.4 3.6E+02 0.012 26.5 25.5 112 106-224 24-152 (737)
375 3kci_A Probable E3 ubiquitin-p 31.6 2.7E+02 0.0093 24.6 31.0 212 64-291 55-293 (389)
376 2cn3_A Xyloglucanase, beta-1,4 30.3 4.1E+02 0.014 26.2 20.1 109 62-172 23-153 (737)
377 1sqj_A OXG-RCBH, oligoxylogluc 29.5 4.3E+02 0.015 26.3 24.3 117 104-226 14-143 (789)
378 3al9_A Plexin-A2; beta-propell 24.7 1.7E+02 0.0059 27.5 7.0 70 107-177 402-476 (539)
379 3no0_A DNA gyrase subunit A; D 24.2 3.1E+02 0.011 22.9 20.4 77 150-235 67-146 (276)
380 3a0f_A Xyloglucanase; beta-pro 24.1 5.3E+02 0.018 25.5 20.0 161 59-226 18-203 (763)
381 1zi0_A DNA gyrase subunit A; b 20.5 4E+02 0.014 22.7 26.6 242 8-290 1-276 (307)
382 1q47_A Semaphorin 3A; beta pro 20.3 2.5E+02 0.0085 26.1 7.0 55 357-411 423-487 (495)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-51 Score=401.22 Aligned_cols=381 Identities=15% Similarity=0.212 Sum_probs=288.3
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|+|++||+|+.||+|+|||+.+++.. ....+.+|.++|.+++|+|++++|++++.+
T Consensus 64 ~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-------------------~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~ 124 (611)
T 1nr0_A 64 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------LKTTIPVFSGPVKDISWDSESKRIAAVGEG 124 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------EEEEEECSSSCEEEEEECTTSCEEEEEECC
T ss_pred EEEECCCCcEEEEEeCCCCEEEeECCCCcce-------------------eeEeecccCCceEEEEECCCCCEEEEEECC
Confidence 4678999999999999999999999765433 225678999999999999999999998865
Q ss_pred ----CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCc-eEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEE
Q 011160 83 ----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 83 ----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~ 157 (492)
+.|++|| .+.....+ .+|...|++++|+| ++. .|++++.|++|++||....+... .+.+|...|++++
T Consensus 125 ~~~~~~v~~wd--~~~~~~~l-~gh~~~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~--~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 125 RERFGHVFLFD--TGTSNGNL-TGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKS--TFGEHTKFVHSVR 197 (611)
T ss_dssp SSCSEEEEETT--TCCBCBCC-CCCSSCEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEE--EECCCSSCEEEEE
T ss_pred CCceeEEEEee--CCCCccee-cCCCCCceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEee--eeccccCceEEEE
Confidence 3677777 45555555 79999999999999 876 59999999999999987765544 3889999999999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
|+|++ .+|++++.|++|++||+.+++....+..... ....|...|.+++|+|+ +.+|++++.|++|++||+++++
T Consensus 198 fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~---~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 198 YNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSL---KNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp ECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTS---SSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE
T ss_pred ECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccc---cccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCc
Confidence 99999 5899999999999999999887665531100 00116668999999998 7899999999999999999876
Q ss_pred ccCCCCCCCCccc----------------------------cCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEe
Q 011160 238 WDGSTDFGQPADY----------------------------FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (492)
Q Consensus 238 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d 288 (492)
.......+..... ........+|...|.+++|+|++++|++++ ++.|++||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352 (611)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 5433221110000 001123346888999999999999999998 66899999
Q ss_pred cCCCCCCCCCC-CCCCC---------------------------------------------------------------
Q 011160 289 QDMGLGPNPPP-SSPVS--------------------------------------------------------------- 304 (492)
Q Consensus 289 ~~~~~~~~~~~-~~~~~--------------------------------------------------------------- 304 (492)
+.++.....+. .+...
T Consensus 353 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~ 432 (611)
T 1nr0_A 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 432 (611)
T ss_dssp TTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS
T ss_pred CCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc
Confidence 98764322110 00000
Q ss_pred ----------------ccccccccCCCCCCCCCCCCCCCcccc--------CCceeeccccceeeeeEEeecCCCcEEEE
Q 011160 305 ----------------TRSEASEMGSDHTSAASPSTANTDVRI--------APQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (492)
Q Consensus 305 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~s~~g~~l~s 360 (492)
.......++|+++.+++...+...... .... .+|... |.+++| +|+|++|++
T Consensus 433 ~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~--v~~v~f-spdg~~las 508 (611)
T 1nr0_A 433 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE--ITSVAF-SNNGAFLVA 508 (611)
T ss_dssp EEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC--EEEEEE-CTTSSEEEE
T ss_pred eEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc--eEEEEE-CCCCCEEEE
Confidence 001122345566655555544332211 1122 456665 899998 999999999
Q ss_pred eeccCeEEEEecCC-CeeeEE--EecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 361 GSDCGRIFIWKKKG-GELIRV--IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 361 g~~dg~i~iwd~~~-~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
++.|++|++|++.+ ++++.. +.+|...|++++|+|++++||+++.|++|++|++..++
T Consensus 509 ~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 509 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred EcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 99999999999987 666554 34599999999999999999999999999999998765
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.4e-50 Score=392.72 Aligned_cols=333 Identities=18% Similarity=0.272 Sum_probs=269.1
Q ss_pred CCCCCCCCc-eEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 3 DASNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 3 ~~~~~~~~~-~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
.+.|+|+++ +|++|+.|++|++||..++++. ..+.+|.+.|++++|+|++++|++|+.
T Consensus 152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~---------------------~~l~~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK---------------------STFGEHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTTBEEE---------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCeEe---------------------eeeccccCceEEEEECCCCCEEEEEEC
Confidence 456888887 5999999999999998866655 678999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeecc------CcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee------------
Q 011160 82 DRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET------------ 143 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~------------ 143 (492)
|++|++||+.+++....+.. +|...|.+++|+| ++++|++++.|++|++||+.+++....
T Consensus 211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 99999999999988776633 7999999999999 999999999999999999987654321
Q ss_pred -----------------------------EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeec-CC
Q 011160 144 -----------------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC-RP 193 (492)
Q Consensus 144 -----------------------------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~ 193 (492)
..+.+|...|++++|+|++ .+|++++.|+.|++||+.++.....+.. +.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 2345799999999999999 5899999999999999988764332200 00
Q ss_pred C--------------------------------C-------C-----------CCc---------------------cee
Q 011160 194 I--------------------------------D-------D-----------RRN---------------------YMT 202 (492)
Q Consensus 194 ~--------------------------------~-------~-----------~~~---------------------~~~ 202 (492)
. . . ..+ ..+
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 0 0 0 000 001
Q ss_pred ecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D 281 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 281 (492)
...+.+++|+|+ +.+|++|+.|+.|++||+..+.... ... ..|...|.+++|+|+|++|++++ +
T Consensus 448 ~~~v~~va~spd-g~~lasgs~D~~v~lwd~~~~~~~~-------------~~~-~~h~~~v~~v~fspdg~~las~s~d 512 (611)
T 1nr0_A 448 SYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSE-------------VKT-IVHPAEITSVAFSNNGAFLVATDQS 512 (611)
T ss_dssp SSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEE-------------EEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEeCC-CCEEEEeCCCCeEEEEEccCCceee-------------eec-cCCCCceEEEEECCCCCEEEEEcCC
Confidence 234789999998 7899999999999999997653210 011 34678899999999999999998 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCc--eeeccccceeeeeEEeecCCCcEEE
Q 011160 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNFFGPKCEYVV 359 (492)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~s~~g~~l~ 359 (492)
+.|++|++.+.. .... .+.+|... |.+++| +|+|++||
T Consensus 513 ~~v~~w~~~~~~-------------------------------------~~~~~~~~~~H~~~--V~~v~f-spdg~~la 552 (611)
T 1nr0_A 513 RKVIPYSVANNF-------------------------------------ELAHTNSWTFHTAK--VACVSW-SPDNVRLA 552 (611)
T ss_dssp SCEEEEEGGGTT-------------------------------------EESCCCCCCCCSSC--EEEEEE-CTTSSEEE
T ss_pred CCEEEEEcCCCC-------------------------------------ceeeeeeeeecccc--eeEEEE-CCCCCEEE
Confidence 689999987521 1111 23347766 999999 99999999
Q ss_pred EeeccCeEEEEecCCCe-ee-EEEecC-CceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 360 SGSDCGRIFIWKKKGGE-LI-RVIEAD-RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 360 sg~~dg~i~iwd~~~~~-~~-~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
+|+.|++|+||++.++. .+ ..+.+| ...|++++|+|+++ |++++.|++|++|++.
T Consensus 553 sgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 553 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 99999999999998865 33 667789 78999999999998 9999999999999973
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-49 Score=370.60 Aligned_cols=289 Identities=18% Similarity=0.343 Sum_probs=259.2
Q ss_pred eeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEE
Q 011160 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (492)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 132 (492)
....+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+ .+|...|.+++|+| ++.+|++|+.|++|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~--~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDH--SGKLLASCSADMTIKL 176 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCCCE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence 35678899999999999999999999999999999999999988777 79999999999999 9999999999999999
Q ss_pred EecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc
Q 011160 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (492)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (492)
||+.+...+.. +.+|...|.+++|+|++ .+|++|+.|++|++||++++..+..+.. +...|.++.|+
T Consensus 177 wd~~~~~~~~~--~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------h~~~v~~~~~~ 243 (410)
T 1vyh_C 177 WDFQGFECIRT--MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTG----------HREWVRMVRPN 243 (410)
T ss_dssp EETTSSCEEEC--CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEEC
T ss_pred EeCCCCceeEE--EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeC----------CCccEEEEEEC
Confidence 99988776655 88999999999999999 5889999999999999999988877754 45579999999
Q ss_pred CCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC--------------------
Q 011160 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-------------------- 272 (492)
Q Consensus 213 p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-------------------- 272 (492)
|+ +.+|++++.|+.|++||+++++.. .....|...|.+++|+|+
T Consensus 244 ~~-g~~l~s~s~D~~v~vwd~~~~~~~---------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 244 QD-GTLIASCSNDQTVRVWVVATKECK---------------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp TT-SSEEEEEETTSCEEEEETTTCCEE---------------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred CC-CCEEEEEcCCCeEEEEECCCCcee---------------eEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 98 789999999999999999876532 123457788999999996
Q ss_pred CCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee
Q 011160 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (492)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (492)
+.+|++++ ++.|++||+.+ ...+..+.+|... |.+++|
T Consensus 308 g~~l~sgs~D~~i~iwd~~~--------------------------------------~~~~~~~~~h~~~--v~~v~~- 346 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVST--------------------------------------GMCLMTLVGHDNW--VRGVLF- 346 (410)
T ss_dssp CCEEEEEETTSEEEEEETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-
T ss_pred CCEEEEEeCCCeEEEEECCC--------------------------------------CceEEEEECCCCc--EEEEEE-
Confidence 56788888 66899999987 3556778889886 899998
Q ss_pred cCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
+|+|++|++|+.||+|++||+.+++++..+.+|...|++++|+|++++|++|+.||+|++|++
T Consensus 347 ~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-48 Score=354.56 Aligned_cols=294 Identities=18% Similarity=0.275 Sum_probs=254.6
Q ss_pred eeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
.++...++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+ ..|...|.+++|+| ++++|++++.|+.
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~s~~~d~~ 120 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAP--SGNYVACGGLDNI 120 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECT--TSSEEEEEETTCE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECC--CCCEEEEEeCCCe
Confidence 34667889999999999999999999999999999999999999988777 68999999999999 9999999999999
Q ss_pred EEEEecccCCe--eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 130 VRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 130 v~iw~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
|++|++.+... .....+.+|...|.++.|++++ .+++++.|+.|++||+++++....+.. |...|.
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~----------h~~~v~ 188 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTG----------HTGDVM 188 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcC----------CCCceE
Confidence 99999987542 2334578899999999999987 479999999999999999987776653 556799
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (492)
+++|+|+ +.+|++|+.|+.|++||+++++.. .....|...|.+++|+|++++|++++ ++.|++
T Consensus 189 ~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~---------------~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~i 252 (340)
T 1got_B 189 SLSLAPD-TRLFVSGACDASAKLWDVREGMCR---------------QTFTGHESDINAICFFPNGNAFATGSDDATCRL 252 (340)
T ss_dssp EEEECTT-SSEEEEEETTSCEEEEETTTCSEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEECCC-CCEEEEEeCCCcEEEEECCCCeeE---------------EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 9999998 789999999999999999876532 22345788999999999999999998 668999
Q ss_pred EecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCe
Q 011160 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (492)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~ 366 (492)
||+.++ ..+..+..+.....|.+++| +|+|++|++|+.||.
T Consensus 253 wd~~~~--------------------------------------~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 253 FDLRAD--------------------------------------QELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFN 293 (340)
T ss_dssp EETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTSE
T ss_pred EECCCC--------------------------------------cEEEEEccCCcccceEEEEE-CCCCCEEEEECCCCe
Confidence 999763 22222322222223889998 999999999999999
Q ss_pred EEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|++|+||+
T Consensus 294 i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999999999997
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=351.18 Aligned_cols=290 Identities=21% Similarity=0.315 Sum_probs=253.4
Q ss_pred eeEeecCccceEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceeee-eccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 53 IYAKLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
+.+.+++|.+.|++++|+|+ +.+|+||+.|++|+||++..+..... .+.+|...|.+++|+| ++.++++++.|
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~--~~~~l~s~s~D 101 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLD 101 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS--SSSEEEEEETT
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC--CCCEEEEEeCC
Confidence 34667899999999999985 67999999999999999987764322 2379999999999999 99999999999
Q ss_pred CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
+.|++||+.+++.+.. +..|...+.+++|+|++ .+|++++.+|.|++|++++++....+.. +...+.
T Consensus 102 ~~i~lWd~~~~~~~~~--~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~----------~~~~v~ 168 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKS--IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDT----------RGKFIL 168 (321)
T ss_dssp SEEEEEETTTTEEEEE--EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEEC----------SSSCEE
T ss_pred CcEEEEECCCCCEEEE--EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecC----------CCceEE
Confidence 9999999988876654 77788899999999999 5899999999999999999987766653 344689
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (492)
+++|+|+ +++|++|+.||.|++||+++++... ....|...|.+++|+|++++|++++ ++.|++
T Consensus 169 ~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~~---------------~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~i 232 (321)
T 3ow8_A 169 SIAYSPD-GKYLASGAIDGIINIFDIATGKLLH---------------TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232 (321)
T ss_dssp EEEECTT-SSEEEEEETTSCEEEEETTTTEEEE---------------EECCCSSCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEEECCC-CCEEEEEcCCCeEEEEECCCCcEEE---------------EEcccCCceeEEEEcCCCCEEEEEcCCCeEEE
Confidence 9999998 7899999999999999999876432 2345778899999999999999998 668999
Q ss_pred EecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCe
Q 011160 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (492)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~ 366 (492)
||+.++ .....+.+|... |.+++| +|++++|++|+.|++
T Consensus 233 wd~~~~--------------------------------------~~~~~~~~h~~~--v~~~~~-sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 233 YDVQHA--------------------------------------NLAGTLSGHASW--VLNVAF-CPDDTHFVSSSSDKS 271 (321)
T ss_dssp EETTTC--------------------------------------CEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSC
T ss_pred EECCCc--------------------------------------ceeEEEcCCCCc--eEEEEE-CCCCCEEEEEeCCCc
Confidence 999763 445678888876 899998 999999999999999
Q ss_pred EEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
|++||+.+++++..+.+|...|++++|+|++++|++++.||+|++||+
T Consensus 272 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 272 VKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999999999999999999999999996
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.9e-48 Score=346.17 Aligned_cols=296 Identities=17% Similarity=0.270 Sum_probs=253.8
Q ss_pred eeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
++++.++|.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+ ..|..+|.+++|+| ++++|++|+.|+.
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFR 78 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeC--CCCEEEEECCCCE
Confidence 34567889999999999999999999999999999999999999888777 78999999999999 9999999999999
Q ss_pred EEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc-ceeecCCCCCCCcceeecceEE
Q 011160 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
|++||+.+++.+.. +.+|...|++++|+|++ .+|++|+.|++|++||++++... ..+.. |...|.+
T Consensus 79 i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~----------h~~~v~~ 145 (304)
T 2ynn_A 79 IRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMC 145 (304)
T ss_dssp EEEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECC----------CCSCEEE
T ss_pred EEEEECCCCcEEEE--EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcc----------cCCcEEE
Confidence 99999998877655 88999999999999999 58999999999999999887433 33322 5567999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC--CCCeeEeec-CCcEE
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIY 285 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~-~~~i~ 285 (492)
++|+|.++.+|++|+.|+.|++||+++.... .....++...+..+.|+| ++.+|++++ ++.|+
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCS--------------EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCcc--------------ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 9999965789999999999999999765421 122334567889999987 678899888 66899
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
+||+.+ ...+..+.+|... |.+++| +|++++|++|+.||
T Consensus 212 iWd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~s~Dg 250 (304)
T 2ynn_A 212 IWDYQT--------------------------------------KSCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDG 250 (304)
T ss_dssp EEETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTS
T ss_pred EEeCCC--------------------------------------CccceeeCCCCCC--EEEEEE-CCCCCEEEEEcCCC
Confidence 999987 3567788899887 889998 99999999999999
Q ss_pred eEEEEecCCCeeeEEEecCCceeEEEeecCCCC--eEEEeeCCCCEEEeccCCC
Q 011160 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNAA 417 (492)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~ 417 (492)
+|++||+.+++++..+..|...+.+++|+|++. ++++|+ +..+.+|++...
T Consensus 251 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~~ 303 (304)
T 2ynn_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGND 303 (304)
T ss_dssp CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC--
T ss_pred eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEeccC
Confidence 999999999999999999999999999999886 467665 556888887653
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5e-49 Score=363.41 Aligned_cols=307 Identities=19% Similarity=0.303 Sum_probs=257.0
Q ss_pred eeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
+.+.++|.+|.+.|++++|+|++++|+||+.|++|+|||+.+++....+ ..|...|.+++|+| ++++|++|+.|+.|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~--~g~~las~~~d~~v 132 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAP--NGQSVACGGLDSAC 132 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECT--TSSEEEECCSSSCC
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCcE
Confidence 4566889999999999999999999999999999999999999988777 78999999999999 99999999999999
Q ss_pred EEEecccCC-----eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecc
Q 011160 131 RHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (492)
Q Consensus 131 ~iw~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (492)
++|++.... ......+.+|...|.++.|.|+++..|++|+.|++|++||+++++.+..+..... .+ |...
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~---~~--h~~~ 207 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP---SG--HTAD 207 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS---SS--CCSC
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC---CC--CccC
Confidence 999986532 1122347789999999999998767799999999999999999988766532211 11 5568
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcE
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i 284 (492)
+.+++|+|.++.+|++|+.|+.|++||++.... ......+|...|.+++|+|++++|++++ |+.|
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSR--------------AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--------------CCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--------------ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 999999885578999999999999999975321 2234456888999999999999999999 6689
Q ss_pred EEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccc-----ceeeeeEEeecCCCcEEE
Q 011160 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-----CVTVKGVNFFGPKCEYVV 359 (492)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~s~~g~~l~ 359 (492)
++||+.++... ..+..+.. ...|.+++| +|+|++|+
T Consensus 274 ~lwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~ 314 (380)
T 3iz6_a 274 RLFDMRTGHQL--------------------------------------QVYNREPDRNDNELPIVTSVAF-SISGRLLF 314 (380)
T ss_dssp EEEETTTTEEE--------------------------------------EEECCCCSSSCCSSCSCSEEEE-CSSSSEEE
T ss_pred EEEECCCCcEE--------------------------------------EEecccccccccccCceEEEEE-CCCCCEEE
Confidence 99999875321 11111110 112788998 99999999
Q ss_pred EeeccCeEEEEecCCCeeeEEE----ecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 360 SGSDCGRIFIWKKKGGELIRVI----EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 360 sg~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++++|++|+.|++|++|++...+
T Consensus 315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999988887 6899999999999999999999999999999998754
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-47 Score=349.61 Aligned_cols=294 Identities=15% Similarity=0.242 Sum_probs=252.7
Q ss_pred eeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
....++.+|.+.|++++|+|++++|+||+.||+|+|||..+++....+ ..|...|.+++|+| ++.+|++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp--~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAP--SGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECT--TSSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCCEE
Confidence 566889999999999999999999999999999999999998887777 67888999999999 999999999999999
Q ss_pred EEecccCC----eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 132 HAQILERG----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 132 iw~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
+|++.... ......+..|...|.+++|+|++ ..|++++.|++|++||+++++.+..+.. |...|.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~----------h~~~v~ 200 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHG----------HGADVL 200 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEE
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcC----------CCCCeE
Confidence 99986432 12223467899999999999998 5789999999999999999988877764 455789
Q ss_pred EEEEcCC-CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEE
Q 011160 208 AIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (492)
Q Consensus 208 ~~~~~p~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (492)
+++|+|. ++.+|++|+.||.|++||+++++.. .....|...|.+++|+|++.+|++++ ++.|+
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~---------------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV---------------QAFETHESDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE---------------EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 9999885 2579999999999999999987532 22345788999999999999999998 66899
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
+||++.. ..+..+..+.....+.+++| +|+|++|++|+.|+
T Consensus 266 lwd~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 266 LYDLRAD--------------------------------------REVAIYSKESIIFGASSVDF-SLSGRLLFAGYNDY 306 (354)
T ss_dssp EEETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTS
T ss_pred EEECCCC--------------------------------------cEEEEEcCCCcccceeEEEE-eCCCCEEEEEECCC
Confidence 9999763 12222332222223788998 99999999999999
Q ss_pred eEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|++|++|+
T Consensus 307 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 307 TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999999999999999996
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.2e-48 Score=352.83 Aligned_cols=292 Identities=15% Similarity=0.184 Sum_probs=234.5
Q ss_pred ecCccceEEEEEEcCCCCEEEEecC------CCeEEEEECCCCceeeee---ccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 57 LDKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
..+|...|++++|+|||++||+|+. |+.|++|+..++.....+ ..+|...|.+++|+| ++. +++++.|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--d~~-~l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS--EKG-ILVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET--TTE-EEEEETT
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC--CCC-EEEEECC
Confidence 3479999999999999999999997 788999998877643322 246888999999999 775 5567789
Q ss_pred CcEEEEecccCCeeee--EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecc
Q 011160 128 GQVRHAQILERGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (492)
|+|+|||+.+++.... ....+|...|++++|+|++ .+|++++.|+.|++||+++++.+..+.. +...
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~----------h~~~ 183 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNA----------HSSE 183 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSC
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCC
Confidence 9999999988765432 2345799999999999999 5899999999999999999988877754 5568
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeec-CCc
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEF 283 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~ 283 (492)
|++++|+|++..++++++.|+.|++||+++++..... ....+...+.+++|+|++ .+|++++ ++.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~ 250 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-------------DFCASDTIPTSVTWHPEKDDTFACGDETGN 250 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-------------CCTTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeee-------------eeccccccccchhhhhcccceEEEeecccc
Confidence 9999999986678999999999999999887643221 123356789999999975 6777777 668
Q ss_pred EEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEEee
Q 011160 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGS 362 (492)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~ 362 (492)
|++||+.+ ...+..+.+|... |.+++| +|++ ++||+|+
T Consensus 251 i~~wd~~~--------------------------------------~~~~~~~~~~~~~--v~~l~~-sp~~~~~lasgs 289 (357)
T 4g56_B 251 VSLVNIKN--------------------------------------PDSAQTSAVHSQN--ITGLAY-SYHSSPFLASIS 289 (357)
T ss_dssp EEEEESSC--------------------------------------GGGCEEECCCSSC--EEEEEE-CSSSSCCEEEEE
T ss_pred eeEEECCC--------------------------------------CcEeEEEecccee--EEEEEE-cCCCCCEEEEEe
Confidence 99999987 4566778888876 899998 9987 5899999
Q ss_pred ccCeEEEEecCCCeeeEEEecCCceeEEEeecC-CCCeEEEeeCCCCEEEeccCCC
Q 011160 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
.||+|+|||+.+++++..+ +|.+.|++++|+| ++++|+|++.||+|++|++...
T Consensus 290 ~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 290 EDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999887665 7999999999998 7899999999999999999654
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-47 Score=345.19 Aligned_cols=321 Identities=16% Similarity=0.241 Sum_probs=249.8
Q ss_pred eeeeeEeecCccc-eEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee--eeeccCcCcceEEEEecCCCCCceEEeecC
Q 011160 50 RLGIYAKLDKHRG-CVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 50 ~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
.+.+..++.+|.+ .|.+++|+|+|++||+|+.|++|+||++.++... ..+..+|...|.+++|+| ++++|++|+.
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEET
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEEC
Confidence 3456788999988 9999999999999999999999999999887643 233468999999999999 9999999999
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
|+.|++|++..+.......+.+|...|.+++|+|++ .+|++++.|+.|++||++++.....+.... + +...|
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-----~--h~~~v 153 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLN-----S--HTQDV 153 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEEC-----C--CCSCE
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEec-----C--cCCCe
Confidence 999999999877655555688999999999999999 689999999999999998775433222111 1 55679
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (492)
.+++|+|+ +.+|++++.|+.|++||.+.++.. ......+|...|.+++|+|++++|++++ |+.|+
T Consensus 154 ~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-------------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~ 219 (345)
T 3fm0_A 154 KHVVWHPS-QELLASASYDDTVKLYREEEDDWV-------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219 (345)
T ss_dssp EEEEECSS-SSCEEEEETTSCEEEEEEETTEEE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-------------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEE
Confidence 99999998 789999999999999999875421 1123446788999999999999999998 66899
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec-cccceeeeeEEeecCCCcEEEEeecc
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDC 364 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~g~~l~sg~~d 364 (492)
+|+.........+... ........+..+.+ |... |.+++| +|++.+|++++.|
T Consensus 220 iW~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~h~~~--v~~v~~-~~~~~~l~s~~~d 273 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACS-----------------------GSDPSWKCICTLSGFHSRT--IYDIAW-CQLTGALATACGD 273 (345)
T ss_dssp EEEEECTTCTTCCCCC--------------------------CEEEEEEEECSSCSSC--EEEEEE-CTTTCCEEEEETT
T ss_pred EeccccCCCCccceee-----------------------ccCCccceeEEecCCCCCc--EEEEEE-ecCCCEEEEEeCC
Confidence 9997543221111000 00000122334444 5544 899999 9999999999999
Q ss_pred CeEEEEecCCCe--------e-eEEEecCCceeEEEeecCCCC-eEEEeeCCCCEEEeccCCCCCC
Q 011160 365 GRIFIWKKKGGE--------L-IRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 365 g~i~iwd~~~~~--------~-~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+.|++|+...+. . .....+|...|++++|+|++. +|||++.||+|++|++.+++..
T Consensus 274 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 999999986542 1 122357999999999999985 9999999999999999887654
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.1e-48 Score=348.41 Aligned_cols=297 Identities=16% Similarity=0.232 Sum_probs=234.1
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
..+.|+|+|++|++++ |+++|+||.......... .... .........|...|.+++|+|++ .|++|+.
T Consensus 34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~ 101 (344)
T 4gqb_B 34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----AAPN-----EGFCSAGVQTEAGVADLTWVGER-GILVASD 101 (344)
T ss_dssp EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----GTTC-----GGGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred EEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----ccCC-----cceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence 3567999999999887 789999985532211000 0000 00011122367789999999985 6889999
Q ss_pred CCeEEEEECCCCceeeee---ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEE
Q 011160 82 DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 158 (492)
||+|+|||+.+++.+... ..+|...|++++|+| ++++|++|+.||+|++||+.+++.+.. +.+|...|++++|
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSS--YRAHAAQVTCVAA 177 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEE
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCcCCceEEEEe
Confidence 999999999988754432 358999999999999 999999999999999999998876655 8899999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
+|++..+|++++.|++|++||+++++....+.... +...+.+++|+|+++.+|++|+.||.|++||+++++
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~- 248 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS- 248 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred cCCCCCceeeeccccccccccccccceeeeeecce--------eeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-
Confidence 99987789999999999999999998776654321 344688999999777889999999999999987643
Q ss_pred cCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
T Consensus 249 -------------------------------------------------------------------------------- 248 (344)
T 4gqb_B 249 -------------------------------------------------------------------------------- 248 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCC
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 397 (492)
.+..+.+|... |.+++| +|++ ++||+|+.|++|+|||+.+++++ .+.+|.+.|++++|+|++
T Consensus 249 -------------~~~~~~~h~~~--v~~v~f-sp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~ 311 (344)
T 4gqb_B 249 -------------CVLSSAVHSQC--VTGLVF-SPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLN 311 (344)
T ss_dssp -------------CCEEEECCSSC--EEEEEE-CSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSS
T ss_pred -------------EEEEEcCCCCC--EEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCC
Confidence 23445666665 889998 9998 58999999999999999988765 578999999999999998
Q ss_pred C-eEEEeeCCCCEEEeccCCCCCC
Q 011160 398 T-VLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 398 ~-~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+ +|+|+|.|++|++|++.++...
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC----
T ss_pred CeEEEEEcCCCeEEEEECCCCCCC
Confidence 7 5679999999999999876443
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.4e-47 Score=371.60 Aligned_cols=310 Identities=23% Similarity=0.411 Sum_probs=267.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|+++++++++.|+.|++|+.. ++.. ..+.+|...|.+++|+|++++|++++.|
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~t~~~d 324 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRN-GQLL---------------------QTLTGHSSSVWGVAFSPDGQTIASASDD 324 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT-SCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCC-CcEE---------------------EEEecCCCCeEEEEECCCCCEEEEEeCC
Confidence 45688999999999999999999975 5444 6788999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
+.|++|+..... +..+ .+|...|.+++|+| ++++|++++.||.|++|+. +++.... +.+|...|++++|+|++
T Consensus 325 ~~i~~w~~~~~~-~~~~-~~~~~~v~~~~~s~--~g~~l~~~~~dg~v~~~~~-~~~~~~~--~~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 325 KTVKLWNRNGQH-LQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQT--LTGHSSSVRGVAFSPDG 397 (577)
T ss_dssp SCEEEEETTSCE-EEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEEEEEET-TCCEEEE--EECCSSCEEEEEECTTS
T ss_pred CeEEEEeCCCCe-eEEE-eCCCCCEEEEEECC--CCCEEEEEeCCCEEEEEcC-CCCEEEE--ecCCCCCeEEEEECCCC
Confidence 999999976544 4555 68999999999999 9999999999999999996 3444433 78899999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
.+|++++.|+.|++||. +++....+.. +...|.+++|+|+ +.+|++++.|+.|++||.....
T Consensus 398 -~~l~~~~~d~~v~~~~~-~~~~~~~~~~----------~~~~v~~~~~s~d-~~~l~~~~~d~~v~~w~~~~~~----- 459 (577)
T 2ymu_A 398 -QTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVWGVAFSPD-DQTIASASDDKTVKLWNRNGQL----- 459 (577)
T ss_dssp -SCEEEEETTSEEEEECT-TCCEEEEEEC----------CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTSCE-----
T ss_pred -CEEEEEeCCCEEEEEeC-CCCEEEEecC----------CCCCeEEEEECCC-CCEEEEEcCCCEEEEEECCCCE-----
Confidence 57899999999999995 4455544443 5567999999998 7899999999999999974322
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
......|...|.+++|+|++++|++++ ++.|++|+..
T Consensus 460 -----------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~------------------------------- 497 (577)
T 2ymu_A 460 -----------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------------------------- 497 (577)
T ss_dssp -----------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-------------------------------
T ss_pred -----------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-------------------------------
Confidence 122345778999999999999999988 5689999964
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEE
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (492)
...+..+.+|... |++++| +|+|++||+++.||.|++||. +++++..+.+|.+.|++++|+||+++|+
T Consensus 498 --------~~~~~~~~~h~~~--v~~l~~-s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 498 --------GQLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp --------SCEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred --------CCEEEEEeCCCCC--EEEEEE-cCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 2456778899887 899998 999999999999999999996 7889999999999999999999999999
Q ss_pred EeeCCCCEEEec
Q 011160 402 SSGIESDIKILT 413 (492)
Q Consensus 402 s~~~dg~i~iw~ 413 (492)
|++.|++|++||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 999999999997
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-46 Score=337.14 Aligned_cols=296 Identities=21% Similarity=0.345 Sum_probs=255.7
Q ss_pred eeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
+.+..++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+ .+|...|.+++|+| ++++|++++.||.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcC--CCCEEEEECCCCEE
Confidence 4566788999999999999999999999999999999999998887777 78999999999999 99999999999999
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
++||+.+++.+.. +.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+.. +...|.+++
T Consensus 90 ~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~v~~~~ 156 (312)
T 4ery_A 90 KIWDVSSGKCLKT--LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPA----------HSDPVSAVH 156 (312)
T ss_dssp EEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEE
T ss_pred EEEECCCCcEEEE--EcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcEEEEE
Confidence 9999998876655 78899999999999998 5899999999999999999987766653 455799999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (492)
|+|+ +.+|++++.||.|++||+++++... .....+...+..++|+|++++|++++ ++.|++||+
T Consensus 157 ~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 157 FNRD-GSLIVSSSYDGLCRIWDTASGQCLK--------------TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp ECTT-SSEEEEEETTSCEEEEETTTCCEEE--------------EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCceee--------------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9998 7899999999999999998865322 12234566899999999999999888 678999999
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEE
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~i 369 (492)
.++ ..+..+.+|..........+..+++.+|++|+.||.|++
T Consensus 222 ~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 222 SKG--------------------------------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263 (312)
T ss_dssp TTT--------------------------------------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred CCC--------------------------------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 873 345566666654323333443578999999999999999
Q ss_pred EecCCCeeeEEEecCCceeEEEeecCCCCeEEEee--CCCCEEEeccC
Q 011160 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPN 415 (492)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 415 (492)
||+.+++.+..+.+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 264 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999987 69999999875
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.9e-47 Score=370.18 Aligned_cols=336 Identities=22% Similarity=0.388 Sum_probs=281.0
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++++.|+.|++||.. ++.+ ..+.+|...|++++|+|++++|++++.|
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~---------------------~~~~~~~~~v~~v~~~~d~~~l~~~~~d 283 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVKLWNRN-GQLL---------------------QTLTGHSSSVNGVAFRPDGQTIASASDD 283 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTT-SCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCC-CCEE---------------------EEEecCCCCEEEEEEcCCCCEEEEEeCC
Confidence 35688999999999999999999965 5544 6788999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
+.|++|+.. ++....+ .+|...|.+++|+| ++..|++++.||.|++|++... ... .+.+|...|.+++|+|++
T Consensus 284 ~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~~~d~~i~~w~~~~~-~~~--~~~~~~~~v~~~~~s~~g 356 (577)
T 2ymu_A 284 KTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQ-HLQ--TLTGHSSSVWGVAFSPDG 356 (577)
T ss_dssp SCEEEEETT-SCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSC-EEE--EECCCSSCEEEEEECTTS
T ss_pred CEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCC-eeE--EEeCCCCCEEEEEECCCC
Confidence 999999964 5555555 78999999999999 9999999999999999997543 333 377899999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
.+|++++.|+.|++|+. +++.+..+.. +...|.+++|+|+ +.+|++++.|+.|++||... +.
T Consensus 357 -~~l~~~~~dg~v~~~~~-~~~~~~~~~~----------~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~~~~-~~---- 418 (577)
T 2ymu_A 357 -QTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNG-QL---- 418 (577)
T ss_dssp -SEEEEEETTSEEEEEET-TCCEEEEEEC----------CSSCEEEEEECTT-SSCEEEEETTSEEEEECTTC-CE----
T ss_pred -CEEEEEeCCCEEEEEcC-CCCEEEEecC----------CCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCC-CE----
Confidence 58899999999999995 4555554443 4557999999998 78999999999999999643 21
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
......|...|.+++|+|++++|++++ ++.|++|+...
T Consensus 419 -----------~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------------------------------ 457 (577)
T 2ymu_A 419 -----------LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------------------------------ 457 (577)
T ss_dssp -----------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS------------------------------
T ss_pred -----------EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC------------------------------
Confidence 122345778999999999999999988 66899999643
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEE
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (492)
..+..+.+|... |.+++| +|++++|++++.|+.|++|+. +++++..+.+|...|++++|+|++++||
T Consensus 458 ---------~~~~~~~~~~~~--v~~~~~-spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 458 ---------QLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp ---------CEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred ---------CEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEE
Confidence 345677888876 899998 999999999999999999995 7889999999999999999999999999
Q ss_pred EeeCCCCEEEeccCCCCCCcccCcccccccccccccccccCchhhH
Q 011160 402 SSGIESDIKILTPNAADRATLPTNIEQFKPKATRWMHHVLSPEDLM 447 (492)
Q Consensus 402 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (492)
+++.||.|++||........+.. |.+.+..++++++..
T Consensus 525 s~~~dg~v~lwd~~~~~~~~~~~--------h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 525 SASDDKTVKLWNRNGQLLQTLTG--------HSSSVWGVAFSPDGQ 562 (577)
T ss_dssp EEETTSEEEEECTTSCEEEEEEC--------CSSCEEEEEECTTSS
T ss_pred EEECcCEEEEEeCCCCEEEEEcC--------CCCCEEEEEEcCCCC
Confidence 99999999999975433333332 456677777665543
No 15
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-47 Score=359.38 Aligned_cols=335 Identities=14% Similarity=0.159 Sum_probs=273.4
Q ss_pred CCCCCCCCCc-eEeec----------cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEc
Q 011160 2 DDASNNNNNK-RARTS----------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN 70 (492)
Q Consensus 2 ~~~~~~~~~~-~l~t~----------~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 70 (492)
-.+.|+|+++ +|++| +.||.|+|||+.++.... .... ..|...|++++|+
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~------------------~~~~-~~~~~~v~~~~~s 76 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK------------------PIAS-LQVDSKFNDLDWS 76 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS------------------CSCC-CCCSSCEEEEEEC
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc------------------EEEE-EecCCceEEEEEC
Confidence 3578899987 89999 899999999999775320 1122 3588999999999
Q ss_pred CCCCEEEEecCCCeEEEEECCC----CceeeeeccCcCcceEEEEecCCCC-CceEEeecCCCcEEEEecccCC------
Q 011160 71 TDGDILISGSDDRRVILWDWKT----ERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERG------ 139 (492)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~------ 139 (492)
|++++|++|+.||.|++|++.+ ...+..+ .+|...|.+++|+| + +.+|++++.||.|++||+.+..
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNA--KQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECS--SSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcC--CCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 9999999999999999999987 3354555 78999999999999 7 8999999999999999998876
Q ss_pred eeee-EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 140 GVET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 140 ~~~~-~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
.... .....|...|.+++|+|++..+|++++.||.|++||+++++....+...... .+ +...+.+++|+|++..+
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN--SG--IKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS--SC--CCCCEEEEEECSSCTTE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc--cc--cCCceEEEEECCCCCCE
Confidence 2221 2246789999999999995579999999999999999998877766543110 00 25679999999986679
Q ss_pred EEEecCCC---eEEEEecccccccCCCCCCCCccccCCCCcCC-CcccceEEEEEcC-CCCeeEeec-CCcEEEEecCCC
Q 011160 219 FAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 219 l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
+++++.++ .|++||+++.+. +..... .|...|.+++|+| ++++|++++ ++.|++||+.++
T Consensus 230 l~~~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 230 VATATGSDNDPSILIWDLRNANT--------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp EEEEECCSSSCCCCEEETTSTTS--------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred EEEEECCCCCceEEEEeCCCCCC--------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 99999998 999999987531 122333 5788999999999 899999988 678999999873
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEEeeccCeEEEEe
Q 011160 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWK 371 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~~dg~i~iwd 371 (492)
..+..+.+|... |.+++| +|++ .+|++++.||.|++|+
T Consensus 296 --------------------------------------~~~~~~~~~~~~--v~~~~~-s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 296 --------------------------------------EQLSQFPARGNW--CFKTKF-APEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp --------------------------------------CEEEEEECSSSC--CCCEEE-CTTCTTEEEECCSSSEEEEEE
T ss_pred --------------------------------------ccceeecCCCCc--eEEEEE-CCCCCCEEEEEecCCcEEEEE
Confidence 456677788876 899998 9999 8999999999999999
Q ss_pred cCCCeeeEEEe-----------------------------------cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 372 KKGGELIRVIE-----------------------------------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 372 ~~~~~~~~~~~-----------------------------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+.++....... .|...+++++|+|+|++|++++.|+.|+||++.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 335 LQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 98765432211 1566788999999999999999999999999987
Q ss_pred C
Q 011160 417 A 417 (492)
Q Consensus 417 ~ 417 (492)
+
T Consensus 415 ~ 415 (416)
T 2pm9_A 415 S 415 (416)
T ss_dssp C
T ss_pred C
Confidence 5
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-47 Score=352.08 Aligned_cols=277 Identities=19% Similarity=0.319 Sum_probs=246.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++|+.||+|+|||+.+++.. ..+.+|.+.|++++|+|++++|++|+.|
T Consensus 113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------~~l~~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------RTLKGHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp EEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------EEEeccCCcEEEEEEcCCCCEEEEEeCC
Confidence 3568899999999999999999999988877 7889999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
++|+|||+.+++.+..+ .+|...|.+++|+| ++.+|++|+.|+.|++||+.++..+.. +.+|...|.++.++|++
T Consensus 172 ~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTM-HGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDG 246 (410)
T ss_dssp SCCCEEETTSSCEEECC-CCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTS
T ss_pred CeEEEEeCCCCceeEEE-cCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCC
Confidence 99999999998887777 79999999999999 999999999999999999998877655 78999999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC-------------------CceEEEec
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-------------------ANLFAVAG 223 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------------~~~l~~~~ 223 (492)
.+|++|+.|+.|++||+++++....+.. +...|.+++|+|++ +.+|++|+
T Consensus 247 -~~l~s~s~D~~v~vwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 247 -TLIASCSNDQTVRVWVVATKECKAELRE----------HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp -SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred -CEEEEEcCCCeEEEEECCCCceeeEecC----------CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 5899999999999999999887766643 45579999999962 45899999
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (492)
.|+.|++||+++++... ...+|...|.+++|+|++++|++++ ++.|++||+.+
T Consensus 316 ~D~~i~iwd~~~~~~~~---------------~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~----------- 369 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLM---------------TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----------- 369 (410)
T ss_dssp TTSEEEEEETTTTEEEE---------------EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT-----------
T ss_pred CCCeEEEEECCCCceEE---------------EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------
Confidence 99999999999876322 2345788999999999999999988 56899999876
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
...+..+.+|... |.+++| +|++.+|++|+.||+|+||++
T Consensus 370 ---------------------------~~~~~~~~~h~~~--v~~l~~-~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 370 ---------------------------KRCMKTLNAHEHF--VTSLDF-HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ---------------------------SCCCEEEECCSSC--EEEEEE-CSSSSCEEEEETTSEEEEEC-
T ss_pred ---------------------------CceEEEEcCCCCc--EEEEEE-cCCCCEEEEEeCCCcEEEEeC
Confidence 3566788889886 899999 999999999999999999986
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.5e-46 Score=333.24 Aligned_cols=293 Identities=15% Similarity=0.224 Sum_probs=243.9
Q ss_pred eeeeeEeecCccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCC-----ceeeeeccCcCcceEEEEecCCCCCceEEe
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTE-----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVT 123 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 123 (492)
.+.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++... ..+..+ .+|...|.+++|+| ++.+|++
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~--dg~~l~s 82 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTA--DGAYALS 82 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECC--CCCEEEE
Confidence 456678899999999999999965 89999999999999998642 233444 79999999999999 9999999
Q ss_pred ecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
++.|++|++||+.+++.... +.+|...|.+++|+|++ .+|++++.|++|++||++.. .+..+.. +.
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~~~----------h~ 148 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATLLG----------HN 148 (319)
T ss_dssp EETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEECC----------CS
T ss_pred EeCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEec----------cC
Confidence 99999999999998876654 88999999999999998 58999999999999999754 3333322 55
Q ss_pred cceEEEEEcCCC-----CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEe
Q 011160 204 VNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (492)
Q Consensus 204 ~~v~~~~~~p~~-----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 278 (492)
..+.++.|+|.. +..+++++.|+.|++||+++.+.. ....+|...|.+++|+|++++|++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---------------~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE---------------ADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE---------------EEECCCCSCEEEEEECTTSSEEEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh---------------eeecCCCCcEEEEEEcCCCCEEEE
Confidence 578999999852 348999999999999999876532 223457889999999999999999
Q ss_pred ec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcE
Q 011160 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (492)
Q Consensus 279 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~ 357 (492)
++ ++.|++||+.++ ..+..+..+. .|.+++| +|++.+
T Consensus 214 ~~~dg~i~iwd~~~~--------------------------------------~~~~~~~~~~---~v~~~~~-sp~~~~ 251 (319)
T 3frx_A 214 AGKDGEIMLWNLAAK--------------------------------------KAMYTLSAQD---EVFSLAF-SPNRYW 251 (319)
T ss_dssp EETTCEEEEEETTTT--------------------------------------EEEEEEECCS---CEEEEEE-CSSSSE
T ss_pred EeCCCeEEEEECCCC--------------------------------------cEEEEecCCC---cEEEEEE-cCCCCE
Confidence 88 668999999873 3445555443 2899998 999999
Q ss_pred EEEeeccCeEEEEecCCCeeeEEEec--------CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 358 VVSGSDCGRIFIWKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 358 l~sg~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
|++++.+ .+++|++..+..+..+.. |...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 252 la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 252 LAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9988754 599999998887777653 3456899999999999999999999999999764
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-45 Score=341.08 Aligned_cols=304 Identities=20% Similarity=0.278 Sum_probs=245.9
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcC------------------cceEEEEecCCCCCce
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN------------------DNVFQAKIMPFTDDRS 120 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~ 120 (492)
+|.+.|++++|+|+|++||+|+ ++.++||++.+++.+..+ ..|. ..|.+++|+| ++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECT--TSSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECC--CCCE
Confidence 5999999999999999999987 689999999999887666 3332 2489999999 9999
Q ss_pred EEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcc
Q 011160 121 IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (492)
Q Consensus 121 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (492)
|++|+.|+.|++||+.+++.... +.+|...|++++|+|++ ..|++++.|++|++||+++++....+.
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~---------- 204 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS---------- 204 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE----------
T ss_pred EEEEcCCCeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE----------
Confidence 99999999999999988766554 88999999999999999 588999999999999999988776654
Q ss_pred eeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec
Q 011160 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
+...+.+++|+|.++.+|++|+.|+.|++||+++++....... ......+|...|.+++|+|++++|++++
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~--------~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS--------ENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc--------cccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 3346899999995488999999999999999988754322110 1112245788999999999999999998
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEE
Q 011160 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (492)
Q Consensus 281 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~ 359 (492)
++.|++||+........... .........+.+|... |.+++| +|++++|+
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~--------------------------~~~~~~~~~~~~h~~~--v~~~~~-~~~~~~l~ 326 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKT--------------------------PNSGTCEVTYIGHKDF--VLSVAT-TQNDEYIL 326 (393)
T ss_dssp TTSEEEEEEC-----------------------------------------CEEEEEECCSSC--EEEEEE-CGGGCEEE
T ss_pred CCCEEEEEECCCCCCcccccC--------------------------CCCCcceEEEecccCc--EEEEEE-CCCCCEEE
Confidence 66899999976432111000 0002234567788876 899998 99999999
Q ss_pred EeeccCeEEEEecCCCeeeEEEecCCceeEEEeecC------CCCeEEEeeCCCCEEEeccCCC
Q 011160 360 SGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 360 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
+|+.||.|++||+.+++++..+.+|.+.|.+++|++ ++++|++|+.||+|+||++...
T Consensus 327 sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 327 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999999999999999999999999876 6889999999999999998653
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-46 Score=348.46 Aligned_cols=326 Identities=10% Similarity=0.103 Sum_probs=265.7
Q ss_pred CCCCCCCCc-eEeeccCcceEEEEee----ccCcchhhhhhhcccccccceeeeeeeEee------cCccceEEEEEEcC
Q 011160 3 DASNNNNNK-RARTSVDKALVDVWLR----ELGQLSTRNFALRRRASEDLVLRLGIYAKL------DKHRGCVNTVSFNT 71 (492)
Q Consensus 3 ~~~~~~~~~-~l~t~~~dg~v~~w~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~s~ 71 (492)
.+.|+|+++ +||+|+.||.|++|++ .+++.... ......+...+ .+|.+.|++++|+|
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK-----------LTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE-----------EEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc-----------ccccccccccccccccccCCCCceEEEEEcC
Confidence 467899999 9999999999999999 87763100 00001111122 23788999999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC
Q 011160 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (492)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 151 (492)
++++|++|+.||.|++|+ .++..+..+ .+|...|.+++|+| ++++|++++.||.|++|++.++..... +..+..
T Consensus 119 ~~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~ 192 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQH--FELKET 192 (425)
T ss_dssp TSSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEE--ECCC--
T ss_pred CCCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEE--eecccc
Confidence 999999999999999999 567776766 78999999999999 999999999999999999988776554 555555
Q ss_pred c---------------eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 152 R---------------AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 152 ~---------------v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
. +.+++|+|++ .+++++.+|.|++||+++++....+.. +...|.+++|+|+ +
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~ 259 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIG----------HHGPISVLEFNDT-N 259 (425)
T ss_dssp -------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECC----------CSSCEEEEEEETT-T
T ss_pred CccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeecc----------CCCceEEEEECCC-C
Confidence 5 8999999986 589999999999999999887766643 4557999999998 6
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~ 295 (492)
.+|++++.|+.|++||+++++.. .....|...|.+++|+|++ +|++++ ++.|++||+.++
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--- 320 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQ---------------NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN--- 320 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCS---------------EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---
T ss_pred CEEEEEcCCCEEEEEECCCCccc---------------eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---
Confidence 79999999999999999886532 2234567899999999999 777766 778999999763
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC
Q 011160 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~ 375 (492)
..+..+..|... +.+++| +|++++|++++.||.|++|++.++
T Consensus 321 -----------------------------------~~~~~~~~~~~~--i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 321 -----------------------------------TLLALSIVDGVP--IFAGRI-SQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp -----------------------------------EEEEEEECTTCC--EEEEEE-CTTSSEEEEEETTSCEEEEECHHH
T ss_pred -----------------------------------cEeEecccCCcc--EEEEEE-cCCCCEEEEEECCCeEEEEECCCC
Confidence 455667777765 899998 999999999999999999999988
Q ss_pred e--------------------eeEEEecCCc--eeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 376 E--------------------LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 376 ~--------------------~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
+ ++..+.+|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 363 NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8 8899999976 99999999999999999999999999986
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=330.40 Aligned_cols=273 Identities=20% Similarity=0.298 Sum_probs=239.3
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
++.+|+||+.|++|+||++.+++.. ....+.+|...|.+++|+|++.++++++.|++|++|
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~-------------------~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLD-------------------LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEE-------------------EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCEEEEEcCCCCEEEEECCCCCee-------------------eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4678999999999999999865432 336789999999999999999999999999999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 168 (492)
|+.+++.+..+ ..|...+.+++|+| ++++|++++.+|.|++|++.++..... +..|...|.+++|+|++ .+|++
T Consensus 108 d~~~~~~~~~~-~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~~~~~v~~~~~spdg-~~las 181 (321)
T 3ow8_A 108 DLENGKQIKSI-DAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYS--LDTRGKFILSIAYSPDG-KYLAS 181 (321)
T ss_dssp ETTTTEEEEEE-ECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEE--EECSSSCEEEEEECTTS-SEEEE
T ss_pred ECCCCCEEEEE-eCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEE--ecCCCceEEEEEECCCC-CEEEE
Confidence 99999988877 67888999999999 999999999999999999998876654 77888999999999999 58999
Q ss_pred EcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCc
Q 011160 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (492)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 248 (492)
++.||.|++||+++++.+..+.. +...|.+++|+|+ +.+|++++.|+.|++||+++.+..
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~----------h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~--------- 241 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEG----------HAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLA--------- 241 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECC----------CSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEE---------
T ss_pred EcCCCeEEEEECCCCcEEEEEcc----------cCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCccee---------
Confidence 99999999999999988776653 4557999999998 789999999999999999876532
Q ss_pred cccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC
Q 011160 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (492)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (492)
....+|...|.+++|+|++++|++++ ++.|++||+.+
T Consensus 242 ------~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~------------------------------------ 279 (321)
T 3ow8_A 242 ------GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT------------------------------------ 279 (321)
T ss_dssp ------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------------------------------
T ss_pred ------EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------------------------
Confidence 23445788999999999999999988 66899999987
Q ss_pred ccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
...+..+.+|... |.+++| +|++++|++++.||+|+|||..
T Consensus 280 --~~~~~~~~~h~~~--v~~v~~-s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 280 --RTCVHTFFDHQDQ--VWGVKY-NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp --TEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTCCEEEEECC
T ss_pred --CEEEEEEcCCCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEeCC
Confidence 3566778888876 899999 9999999999999999999963
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.1e-45 Score=331.50 Aligned_cols=298 Identities=15% Similarity=0.219 Sum_probs=238.9
Q ss_pred eeeeeeEeecCccceEEEEEE-----cC-CCCEEEEecCCCeEEEEECCCCc-------eeeeeccCcCcceEEEEecCC
Q 011160 49 LRLGIYAKLDKHRGCVNTVSF-----NT-DGDILISGSDDRRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPF 115 (492)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~ 115 (492)
..+.+...|.+|.+.|++++| ++ ++++|+||+.|++|++||+.+++ ....+ .+|...|.+++|+|
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~- 86 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQ- 86 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECS-
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECC-
Confidence 345667889999999999999 77 89999999999999999987542 23334 79999999999999
Q ss_pred CCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCC
Q 011160 116 TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (492)
Q Consensus 116 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (492)
++.+|++++.|++|++||+.++..... +.+|...|.+++|+|++ .+|++++.|+.|++||+...... .....
T Consensus 87 -~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~-~~~~~--- 158 (343)
T 2xzm_R 87 -ENCFAISSSWDKTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF-SSAEK--- 158 (343)
T ss_dssp -STTEEEEEETTSEEEEEETTSSCEEEE--EECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE-ECCTT---
T ss_pred -CCCEEEEEcCCCcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee-eeecc---
Confidence 999999999999999999998877655 78999999999999999 58899999999999999743221 11110
Q ss_pred CCCcceeecceEEEEEcCCC---------CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEE
Q 011160 196 DRRNYMTVVNLNAIAIDPRN---------ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (492)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (492)
.. +...+.+++|+|++ +.+|++++.|+.|++||..... ......|...|.+
T Consensus 159 --~~--~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 159 --EN--HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI----------------RYTFKAHESNVNH 218 (343)
T ss_dssp --TS--CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE----------------EEEEECCSSCEEE
T ss_pred --cC--CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce----------------eEEEcCccccceE
Confidence 11 55579999999973 1689999999999999954321 1223457789999
Q ss_pred EEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceee
Q 011160 267 LAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (492)
Q Consensus 267 ~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 345 (492)
++|+|++++|++++ ++.|++||+... ......+. +... |
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~-------------------------------------~~~~~~~~-~~~~--v 258 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILNL-------------------------------------TYPQREFD-AGST--I 258 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSCC-------------------------------------SSCSEEEE-CSSC--E
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC-------------------------------------cccceeec-CCCc--E
Confidence 99999999999998 668999998542 11222232 2222 8
Q ss_pred eeEEeecCCCcEEEEeeccCeEEEEecCCCeeeE--EEe-----------cCCceeEEEeecCCCCeEEEeeCCCCEEEe
Q 011160 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIE-----------ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (492)
Q Consensus 346 ~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (492)
.+++| +|+++++++| .|+.|++|++.+++... .+. +|...|++++|+|++++|++|+.||+|++|
T Consensus 259 ~~v~~-sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 259 NQIAF-NPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEE-CSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEE-CCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 89998 9999988765 57889999998776543 443 677889999999999999999999999999
Q ss_pred ccCCCC
Q 011160 413 TPNAAD 418 (492)
Q Consensus 413 ~~~~~~ 418 (492)
++++++
T Consensus 337 ~~~~g~ 342 (343)
T 2xzm_R 337 SFETSA 342 (343)
T ss_dssp EEEEEE
T ss_pred EEEccC
Confidence 987653
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-44 Score=329.36 Aligned_cols=317 Identities=15% Similarity=0.155 Sum_probs=264.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.++|+|++++++..++.+.+|........ ....+|.+.|++++|+|++++|++++ |
T Consensus 14 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~~~~-d 71 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDALIGPGIPRHARQ---------------------INTLNHGEVVCAVTISNPTRHVYTGG-K 71 (337)
T ss_dssp EEEECSSSCEEECCCCTTSSSSTTCCSEEEE---------------------EEEECCSSCCCEEEECSSSSEEEEEC-B
T ss_pred EEEECCCCCEEEeecCCCcEeccccCCcccc---------------------ceeccCCCceEEEEEecCCcEEEEcC-C
Confidence 4678999999999888877777654422211 23347999999999999999999999 9
Q ss_pred CeEEEEECCCCceeeeec----cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEE
Q 011160 83 RRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 158 (492)
|.|++|++.++.....+. .+|...|.+++|+| ++++|++++.||.|++|++.++.......+..|...|.+++|
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 999999998776433321 27889999999999 999999999999999999998875555567889999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccc
Q 011160 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~ 238 (492)
+|++ .+|++++.||.|++||+++++....+.. +...+.+++|+|+ +.+|++++.||.|++||+++++.
T Consensus 150 ~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 150 SPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCC-CEEEEEeCCCcEEEEeCCCCceeeeeec----------ccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCce
Confidence 9998 5889999999999999999887766653 4557999999998 78999999999999999988764
Q ss_pred cCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCC
Q 011160 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (492)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
... ..+...+.+++|+|++++|++++ ++.|++|++.+.
T Consensus 218 ~~~----------------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~------------------------- 256 (337)
T 1gxr_A 218 LQQ----------------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP------------------------- 256 (337)
T ss_dssp EEE----------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-------------------------
T ss_pred Eee----------------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------
Confidence 322 12456799999999999999888 678999999763
Q ss_pred CCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCC
Q 011160 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (492)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 397 (492)
....+..|... +.+++| +|++++|++++.||.|++|++.+++.+... .|...|++++|+|++
T Consensus 257 --------------~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 257 --------------DKYQLHLHESC--VLSLKF-AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD 318 (337)
T ss_dssp --------------CEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS
T ss_pred --------------CeEEEcCCccc--eeEEEE-CCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC
Confidence 12345566665 899998 999999999999999999999999888554 478889999999999
Q ss_pred CeEEEeeCCCCEEEecc
Q 011160 398 TVLASSGIESDIKILTP 414 (492)
Q Consensus 398 ~~l~s~~~dg~i~iw~~ 414 (492)
++|++++.||.|++|++
T Consensus 319 ~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 319 KYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCeEEEEEE
Confidence 99999999999999997
No 23
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-45 Score=389.19 Aligned_cols=397 Identities=14% Similarity=0.172 Sum_probs=297.9
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.|+|+++++++|+.||+|+|||+.+++.+ ..+.+|.+.|++++|+|++++|++|+.|+
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 679 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKL---------------------LDIKAHEDEVLCCAFSSDDSYIATCSADK 679 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEE---------------------EEeccCCCCEEEEEEecCCCEEEEEeCCC
Confidence 568999999999999999999999988876 67889999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
.|+|||+.+++.+..+ .+|...|.+++|+|..++.++++++.||.|++||+.++..... +.+|...|++++|+|++
T Consensus 680 ~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~sp~~- 755 (1249)
T 3sfz_A 680 KVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT--MFGHTNSVNHCRFSPDD- 755 (1249)
T ss_dssp EEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE--ECCCSSCEEEEEECSST-
T ss_pred eEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe--ecCCCCCEEEEEEecCC-
Confidence 9999999999988887 7899999999999944456889999999999999998877655 78899999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC---------------------------------------------C
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR---------------------------------------------R 198 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------------------~ 198 (492)
.+|++++.||.|++||++++.....+........ .
T Consensus 756 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence 5899999999999999988765544322110000 0
Q ss_pred cceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEe
Q 011160 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (492)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 278 (492)
...+...+.+++|+|+ +.++++++.+|.|++|++.++.... ...+|...|.+++|+|++++|++
T Consensus 836 ~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~~~~---------------~~~~h~~~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 836 HTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLKVA---------------DCRGHLSWVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp ECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTEEEE---------------EECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceee---------------ecCCCccceEEEEECCCCCEEEE
Confidence 0024567889999997 7899999999999999998765332 22345666777777777766666
Q ss_pred ec-CCcEEEEecC-------------------------------------------------------------------
Q 011160 279 YN-DEFIYLFTQD------------------------------------------------------------------- 290 (492)
Q Consensus 279 ~~-~~~i~~~d~~------------------------------------------------------------------- 290 (492)
++ ++.|++|++.
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g 979 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG 979 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEE
Confidence 66 4467777643
Q ss_pred ------------CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC--------------------------------
Q 011160 291 ------------MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN-------------------------------- 326 (492)
Q Consensus 291 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 326 (492)
++.....+..+ ........+++++..+++...+.
T Consensus 980 ~~~g~i~i~d~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A 980 DEDGAIKIIELPNNRVFSSGVGH--KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp ETTSCCEEEETTTTSCEEECCCC--SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE
T ss_pred cCCCCEEEEEcCCCceeeecccC--CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 22111111111 11122233445554444322211
Q ss_pred --------------CccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEe
Q 011160 327 --------------TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE 392 (492)
Q Consensus 327 --------------~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 392 (492)
.........+.+|... |.+++| +|++++|++++.||+|++||+.+++++..+.+|.+.|++++
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~-s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~ 1134 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGT--VLSCAI-SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA 1134 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEECCSSC--CCCEEE-CSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEE
T ss_pred EEEEECCCcEEEEECCCCceeEEEcccCCc--EEEEEE-CCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEE
Confidence 1123344556667766 889998 99999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEeeCCCCEEEeccCCCCCCcccCccccc--ccccccccccccCchhh
Q 011160 393 PHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQF--KPKATRWMHHVLSPEDL 446 (492)
Q Consensus 393 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 446 (492)
|+|++++|++++.||.|++|++.+++........... ...+.+.+..++++++.
T Consensus 1135 ~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 1190 (1249)
T 3sfz_A 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS 1190 (1249)
T ss_dssp ECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTS
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCC
Confidence 9999999999999999999999988765432111100 11145556556655443
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.3e-45 Score=330.41 Aligned_cols=277 Identities=21% Similarity=0.266 Sum_probs=237.0
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++|+.||+|+|||..+++.+ ..+..|...|.+++|+|++++|++|+.|
T Consensus 60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~---------------------~~~~~~~~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 60 AMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---------------------HAIPLRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------EEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCcc---------------------eEeecCCccEEEEEECCCCCEEEEEeCC
Confidence 3568899999999999999999999987766 6678899999999999999999999999
Q ss_pred CeEEEEECCCCce---eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 83 RRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 83 ~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
+.|++|++.++.. ....+.+|...|.++.|++ ++. +++++.|+.|++||+.++..... +.+|...|.+++|+
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~-l~s~s~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~ 193 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQ-IVTSSGDTTCALWDIETGQQTTT--FTGHTGDVMSLSLA 193 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE--TTE-EEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEC
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECC--CCc-EEEEECCCcEEEEECCCCcEEEE--EcCCCCceEEEEEC
Confidence 9999999987642 2223378999999999998 654 88999999999999988776654 78899999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
|++ .+|++|+.|+.|++||++++.....+.. |...|.+++|+|+ +.+|++|+.||.|++||+++.+..
T Consensus 194 ~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~----------h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 194 PDT-RLFVSGACDASAKLWDVREGMCRQTFTG----------HESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp TTS-SEEEEEETTSCEEEEETTTCSEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCC-CEEEEEeCCCcEEEEECCCCeeEEEEcC----------CcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEE
Confidence 998 5899999999999999999988776654 5557999999998 789999999999999999876532
Q ss_pred CCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
... ....+...|.+++|+|++++|++++ ++.|++||+.+
T Consensus 262 ~~~-------------~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~--------------------------- 301 (340)
T 1got_B 262 MTY-------------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--------------------------- 301 (340)
T ss_dssp EEE-------------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------------------
T ss_pred EEE-------------ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc---------------------------
Confidence 211 0112335799999999999999998 66899999876
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
......+.+|... |.+++| +|+|++|++|+.||+|+|||
T Consensus 302 -----------~~~~~~~~~h~~~--v~~~~~-s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 -----------ADRAGVLAGHDNR--VSCLGV-TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------CCEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSCEEEEC
T ss_pred -----------CcEeeEeecCCCc--EEEEEE-cCCCCEEEEEcCCccEEecC
Confidence 3456678899887 899998 99999999999999999997
No 25
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-44 Score=339.69 Aligned_cols=331 Identities=9% Similarity=0.059 Sum_probs=267.5
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++++.||.|++||..+++.. ..+..| ..+....|+|++++|++|+.|
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~l~~~~~d 118 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------KMLKRA-DYTAVDTAKLQMRRFILGTTE 118 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------TTSCSC-CEEEEEEECSSSCEEEEEETT
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------eEEecC-CceEEEEEecCCCEEEEEECC
Confidence 5678999999999999999999999987765 344555 555666889999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
|.|++||+.++.....+ .+|...|++++|+| ++++|++++.||.|++||+.+++.+.. +.+|...|++++|+|++
T Consensus 119 g~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREID-QAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRT--LIGHRATVTDIAIIDRG 193 (420)
T ss_dssp SCEEEECTTSCEEEEET-TSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEE--EECCSSCEEEEEEETTT
T ss_pred CCEEEEeCCCcceeeec-ccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceE--EcCCCCcEEEEEEcCCC
Confidence 99999999988876555 79999999999999 999999999999999999998877655 78899999999999998
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCC--------------cceeecceEEEEEcCCCCceEEEecCCCeE
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--------------NYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 228 (492)
.+|++++.||.|++||+++++....+..+...... ...+...+.+++|+|+ +.+|++++.||.|
T Consensus 194 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i 271 (420)
T 3vl1_A 194 -RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY-GKYVIAGHVSGVI 271 (420)
T ss_dssp -TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT-TEEEEEEETTSCE
T ss_pred -CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC-CCEEEEEcCCCeE
Confidence 58899999999999999999887776543211000 0001234556667887 7899999999999
Q ss_pred EEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec-CCcEEEEecCCCCCCCCCCCCCCCcc
Q 011160 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (492)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 306 (492)
++||+++++... .....|...|.+++|+|++. +|++++ ++.|++||+.++
T Consensus 272 ~i~d~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-------------- 323 (420)
T 3vl1_A 272 TVHNVFSKEQTI--------------QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP-------------- 323 (420)
T ss_dssp EEEETTTCCEEE--------------EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT--------------
T ss_pred EEEECCCCceeE--------------EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC--------------
Confidence 999998875322 22335678999999999998 888888 678999999874
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC---------ee
Q 011160 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---------EL 377 (492)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~---------~~ 377 (492)
...+..+.+|... .+.++.+ +++++|++++.||.|++|++... ..
T Consensus 324 -----------------------~~~~~~~~~~~~~-~v~~~~~--~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 377 (420)
T 3vl1_A 324 -----------------------ECPVGEFLINEGT-PINNVYF--AAGALFVSSGFDTSIKLDIISDPESERPAIEFET 377 (420)
T ss_dssp -----------------------TSCSEEEEESTTS-CEEEEEE--ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTS
T ss_pred -----------------------cCchhhhhccCCC-CceEEEe--CCCCEEEEecCCccEEEEeccCCCCCccceeccC
Confidence 2335666664333 2667744 67899999999999999998763 22
Q ss_pred eEEEecCCceeEEEeecCCCC---eEEEeeCCCCEEEeccCC
Q 011160 378 IRVIEADRHVVNCIEPHPHST---VLASSGIESDIKILTPNA 416 (492)
Q Consensus 378 ~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~ 416 (492)
...+..|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 378 ~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 345667888999999999999 777888899999999875
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-45 Score=334.56 Aligned_cols=288 Identities=18% Similarity=0.235 Sum_probs=226.8
Q ss_pred CCCCCCCCCceEeeccC------cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCE
Q 011160 2 DDASNNNNNKRARTSVD------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI 75 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~------dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 75 (492)
..+.|+|||++||+|+. |+.|++|+..++..... +.....+|...|++++|+|++.
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-----------------~~~~~~~~~~~V~~~~~s~d~~- 107 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES-----------------LCTAGVQTEAGVTDVAWVSEKG- 107 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG-----------------GCSEEEECSSCEEEEEEETTTE-
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee-----------------EecccCCCCCCEEEEEEcCCCC-
Confidence 35789999999999997 78899998877654421 1133456889999999999986
Q ss_pred EEEecCCCeEEEEECCCCceeeee---ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 76 LISGSDDRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
+++++.||+|+|||+.+++..... ..+|...|++++|+| ++++|++++.||.|++||+.+++.+.. +.+|...
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~ 183 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSE 183 (357)
T ss_dssp EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSC
T ss_pred EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCC
Confidence 456778999999999887653321 247999999999999 999999999999999999988776655 8899999
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
|++++|+|+++.++++++.||.|++||+++++....+.... +...+.+++|+|+++.+|++|+.|+.|++||
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~--------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA--------SDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT--------CCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc--------ccccccchhhhhcccceEEEeecccceeEEE
Confidence 99999999987788999999999999999988766554321 4457899999998778999999999999999
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
+++++.. .....|...|++++|+|++ ++|++++ |+.|++||+.++
T Consensus 256 ~~~~~~~---------------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~------------------ 302 (357)
T 4g56_B 256 IKNPDSA---------------QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS------------------ 302 (357)
T ss_dssp SSCGGGC---------------EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC------------------
T ss_pred CCCCcEe---------------EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC------------------
Confidence 9987643 2344577899999999987 5788887 678999998763
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC-CCcEEEEeeccCeEEEEecCCCe
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
+.+ ...+|... |++++| +| ++++|++|+.||+|++|++.+..
T Consensus 303 --------------------~~~-~~~~H~~~--V~~vaf-sP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 303 --------------------EVF-RDLSHRDF--VTGVAW-SPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp --------------------EEE-EECCCSSC--EEEEEE-CSSSTTEEEEEETTSCEEEEECC---
T ss_pred --------------------cEe-EECCCCCC--EEEEEE-eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 222 33468776 999999 98 79999999999999999997643
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-44 Score=326.90 Aligned_cols=316 Identities=18% Similarity=0.245 Sum_probs=235.8
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++||+|+.|++|+|||+.++.... ......+|...|++++|+|++++|++|+.|
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC------------------KSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEE------------------EEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCccee------------------eeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 35689999999999999999999998765331 112346899999999999999999999999
Q ss_pred CeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee-eeEEeecCCCceEEEEEc
Q 011160 83 RRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 83 ~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~v~~i~~~ 159 (492)
++|+||++..+. .+..+ .+|...|.+++|+| ++++|++++.|+.|++||+..+... ....+.+|...|.+++|+
T Consensus 83 ~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp SCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred CcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 999999988764 34444 79999999999999 9999999999999999999876532 234577899999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
|++ .+|++++.|+.|++||++++......... + |...|.+++|+|+ +.+|++++.|++|++|+.......
T Consensus 160 p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~------~--h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 160 PSQ-ELLASASYDDTVKLYREEEDDWVCCATLE------G--HESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SSS-SCEEEEETTSCEEEEEEETTEEEEEEEEC------C--CSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCC-CEEEEEeCCCcEEEEEecCCCEEEEEEec------C--CCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCC
Confidence 999 58899999999999999887543222211 1 5568999999998 789999999999999997544322
Q ss_pred CCCCCC-CCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCC
Q 011160 240 GSTDFG-QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (492)
Q Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
...... ......+.......|...|.+++|+|++..|++++ ++.|++|+...........
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------------------ 291 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT------------------ 291 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC------------------
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee------------------
Confidence 111100 00000111122334778999999999999999888 6689999987642211100
Q ss_pred CCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC-cEEEEeeccCeEEEEecCCCeeeEEE
Q 011160 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~ 381 (492)
.........+|... |.+++| +|++ .+||+|+.||+|++|++.+++....+
T Consensus 292 -----------~~~~~~~~~~h~~~--V~~v~~-~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 292 -----------FSLTAHLHQAHSQD--VNCVAW-NPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp -----------EEEEEEETTSSSSC--EEEEEE-CSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred -----------EEEEeeecccccCc--EeEeEE-eCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 00011223467766 999999 9998 59999999999999999888766544
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-44 Score=323.61 Aligned_cols=303 Identities=15% Similarity=0.191 Sum_probs=228.1
Q ss_pred eeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccC-cCcceEEEEecCCCCCceEEeecCC
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
+++.+.+.+|.++|++++|+|+ +||+|+.|++|++|++..+. ....+..+ |...|.+++|+| ++++|++++.|
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s~D 79 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TSSEEEEEETT
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CCCEEEEEeCC
Confidence 4456889999999999999987 99999999999999998753 33334234 999999999999 99999999999
Q ss_pred CcEEEEecccCC-----eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-C---ccceeecCCCCCCC
Q 011160 128 GQVRHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-A---ATELFTCRPIDDRR 198 (492)
Q Consensus 128 g~v~iw~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~---~~~~~~~~~~~~~~ 198 (492)
+.|++|++.... ......+.+|...|++++|+|++ .+|++|+.|++|++||++.. . .+..+..
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~------- 151 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQE------- 151 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECC-------
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-------
Confidence 999999985421 12234478999999999999999 58999999999999999543 2 2222222
Q ss_pred cceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC--CCee
Q 011160 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELL 276 (492)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l 276 (492)
|...|.+++|+|+ +.+|++++.|++|++||..++... ......+|...|.+++|+|+ +.+|
T Consensus 152 ---h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~~l 214 (330)
T 2hes_X 152 ---HSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDWE-------------CVAVLNGHEGTVWSSDFDKTEGVFRL 214 (330)
T ss_dssp ---CSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEE-------------EEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred ---CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCee-------------EEEEccCCCCcEEEEEecCCCCeeEE
Confidence 5568999999998 789999999999999998764210 11234567889999999998 6788
Q ss_pred Eeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec-cccceeeeeEEeecCC
Q 011160 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPK 354 (492)
Q Consensus 277 ~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~ 354 (492)
++++ |+.|++|++..+..... ........+.+ |... |.+++| +++
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~~------------------------------~~~~~~~~~~~~h~~~--v~~v~~-s~~ 261 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDDQ------------------------------QEWVCEAILPDVHKRQ--VYNVAW-GFN 261 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTSC------------------------------EEEEEEEECCSCCSSC--EEEEEE-CTT
T ss_pred EEEeCCCeEEEEEecCCCcccc------------------------------ceeEEeeecccccccc--eEEEEE-cCC
Confidence 8888 66899999875321100 00112233333 6655 899998 866
Q ss_pred CcEEEEeeccCeEEEEecCCCe--eeEE-EecCCc-eeEEEeecC--CCCeEEEeeCCCCEEEeccCC
Q 011160 355 CEYVVSGSDCGRIFIWKKKGGE--LIRV-IEADRH-VVNCIEPHP--HSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 355 g~~l~sg~~dg~i~iwd~~~~~--~~~~-~~~h~~-~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+ +|++++.||.|+||+..+++ .+.. +.+|.. .|++++|+| ++++||+++.||+|++|+++.
T Consensus 262 ~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 G-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp S-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred C-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 5 89999999999999998874 3333 367876 899999999 789999999999999999865
No 29
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-44 Score=365.64 Aligned_cols=208 Identities=10% Similarity=0.015 Sum_probs=170.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++||+|+.||+|+||+..+++.. ..+ .|...|++++|+| +++|++++.|
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------~~~-~~~~~V~~l~fsp-g~~L~S~s~D 78 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------IKL-EDRSAIKEMRFVK-GIYLVVINAK 78 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTTCEEE---------------------EEC-SSCCCEEEEEEET-TTEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCcEEE---------------------EEc-CCCCCEEEEEEcC-CCEEEEEECc
Confidence 4678999999999999999999998765443 222 4788999999999 8899999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee---------EEeecCCCce
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---------KLLGKHQGRA 153 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---------~~~~~~~~~v 153 (492)
++|+|||+.+++.+..+ .|...|++++|+| ++++|++|+.||.|++||+.++..... ..+.+|...|
T Consensus 79 ~~v~lWd~~~~~~~~~~--~~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTV--FVPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp CEEEEEETTTCSEEEEE--ECSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred CeEEEEECCCCcEEEEE--cCCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence 99999999999988777 3678999999999 999999999999999999987664311 1246788999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCC--------cceeecceEEEEEcCCCCceEEEecCC
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--------NYMTVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
++++|+|++...+++|+.||.| +||+++++....+..+...... ...+...|.+++|+|+ +.+|++++.|
T Consensus 155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~lasgs~D 232 (902)
T 2oaj_A 155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHED 232 (902)
T ss_dssp CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEEEETT
T ss_pred EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEEEECC
Confidence 9999999755688999999999 9999999877666543100000 0013457999999998 7899999999
Q ss_pred CeEEEEeccccccc
Q 011160 226 EYTRLYDIRKYKWD 239 (492)
Q Consensus 226 g~v~i~d~~~~~~~ 239 (492)
|.|++||+++++..
T Consensus 233 g~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 233 NSLVFWDANSGHMI 246 (902)
T ss_dssp CCEEEEETTTCCEE
T ss_pred CeEEEEECCCCcEE
Confidence 99999999887643
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-44 Score=323.23 Aligned_cols=290 Identities=18% Similarity=0.202 Sum_probs=233.0
Q ss_pred CCCCCC-CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 4 ~~~~~~-~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
+.++|+ +++|++|+.|++|++|++...... .......+.+|...|++++|+|++++|++|+.|
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 456664 589999999999999999743321 112346789999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
++|+|||+.+++.+..+ .+|...|.+++|+| ++.+|++++.|+.|++||+.. .... .+.+|...|.+++|.|..
T Consensus 87 ~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~--~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 87 KTLRLWDVATGETYQRF-VGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLA--TLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp SEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEE--EECCCSSCEEEEEECCC-
T ss_pred CEEEEEECCCCCeeEEE-ccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEE--EEeccCCcEEEEEEccCC
Confidence 99999999999988877 79999999999999 999999999999999999964 3333 377899999999999853
Q ss_pred C-----cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 163 P-----HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 163 ~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
. ..+++++.|+.|++||+++.+....+.. |...|.+++|+|+ +.+|++++.||.|++||+++++
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG----------HNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECC----------CCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecC----------CCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc
Confidence 2 4789999999999999998876665543 5568999999998 7899999999999999998876
Q ss_pred ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCC
Q 011160 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
.... .. +...|.+++|+|++.+|++++++.+++|++........+.
T Consensus 230 ~~~~---------------~~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~------------------ 275 (319)
T 3frx_A 230 AMYT---------------LS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR------------------ 275 (319)
T ss_dssp EEEE---------------EE-CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEEC------------------
T ss_pred EEEE---------------ec-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccC------------------
Confidence 4322 11 2357999999999999999998899999987632111000
Q ss_pred CCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC
Q 011160 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~ 375 (492)
.........|... +.+++| +|+|++|++|+.||.|+||++.++
T Consensus 276 ------------~~~~~~~~~~~~~--v~~~~~-spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 276 ------------PEFAGYSKAAEPH--AVSLAW-SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ------------CCCTTCCGGGCCC--EEEEEE-CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ------------ccccccccCcCcc--eeEEEE-CCCCCEEEEeecCceEEEEEEeec
Confidence 0000111223333 789998 999999999999999999998664
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-44 Score=319.83 Aligned_cols=281 Identities=15% Similarity=0.191 Sum_probs=236.6
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++|+.||+|+|||+++++.+ ..+.+|..+|.+++|+|++++|++|+.|
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVEV---------------------RSIQVTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcee---------------------EEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence 4678999999999999999999999988766 6788999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
++|++||+.+++.+..+ .+|...|.+++|+| ++.+|++|+.||+|++||+.++.... ..+.+|...|.+++|+|.+
T Consensus 77 ~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~-~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp SEEEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEE-EEECCCCSCEEEEEECTTC
T ss_pred CEEEEEECCCCcEEEEE-eCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchh-hhhcccCCcEEEEEECCCC
Confidence 99999999999988887 79999999999999 99999999999999999998764433 3478899999999999965
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC-CCceEEEecCCCeEEEEecccccccCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
+.+|++|+.|++|++||++++.....+... +...+..+.|+|. ++.+|++++.|+.|++||+++++..
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-- 221 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-- 221 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECC---------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE--
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccC---------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc--
Confidence 578999999999999999887765554321 3346888899873 2579999999999999999987633
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
....+|...|.+++|+|++.+|++++ |+.|++||+.+
T Consensus 222 -------------~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~----------------------------- 259 (304)
T 2ynn_A 222 -------------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------------- 259 (304)
T ss_dssp -------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-----------------------------
T ss_pred -------------eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC-----------------------------
Confidence 23445788999999999999999998 66899999987
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecCCCc--EEEEeeccCeEEEEecCC
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~--~l~sg~~dg~i~iwd~~~ 374 (492)
.+....+..|... +.++++ +|++. ++++|+.|| +.+|++..
T Consensus 260 ---------~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 260 ---------YKVEKTLNVGLER--SWCIAT-HPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp ---------CCEEEEECCSSSS--EEEEEE-CTTCGGGCEEEEETTE-EEEEECC-
T ss_pred ---------CceeeeccCCCcc--EEEEEE-CCCCCceEEEEecCCc-eEEEEecc
Confidence 3456677777665 789998 77775 578877655 66777643
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.3e-43 Score=319.79 Aligned_cols=296 Identities=14% Similarity=0.229 Sum_probs=241.5
Q ss_pred eeeeeEeecCccceEEEEEEcCC-CCEEEEecCCCeEEEEECCCCce-----eeeeccCcCcceEEEEecCCCCCceEEe
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV-----KLSFHSGHNDNVFQAKIMPFTDDRSIVT 123 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 123 (492)
++.+..+|+||.+.|++|+|+|+ +++|+||+.|++|+|||+.+++. ...+ .+|...|.+++|+| ++++|++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~--dg~~l~s 103 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISS--DGQFALS 103 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECT--TSSEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECC--CCCEEEE
Confidence 44566889999999999999997 68999999999999999876542 3333 78999999999999 9999999
Q ss_pred ecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
++.|+.|++|+......... ...+...+..+.+++++ .+|++++.|+.+++||+........... + +.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~-------~--~~ 171 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDE-------S--HS 171 (340)
T ss_dssp EETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSS-------S--CS
T ss_pred EcccccceEEeecccceeee--ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEec-------c--cc
Confidence 99999999999987665544 66677888999999998 5789999999999999876544322111 1 45
Q ss_pred cceEEEEEcCCC-CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C
Q 011160 204 VNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D 281 (492)
Q Consensus 204 ~~v~~~~~~p~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 281 (492)
..+..++|++++ ..++++++.|+.|++||+++++... ....|...|.+++|+|++++|++++ +
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~---------------~~~~h~~~v~~~~~s~~~~~l~s~s~D 236 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT---------------NHIGHTGYLNTVTVSPDGSLCASGGKD 236 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE---------------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee---------------EecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 578899998864 3467899999999999999876432 2345788999999999999999988 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe
Q 011160 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (492)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg 361 (492)
+.|++||+.+. ..+..+..+.. +.++.| +|++.++ ++
T Consensus 237 g~i~iwd~~~~--------------------------------------~~~~~~~~~~~---v~~~~~-~~~~~~~-~~ 273 (340)
T 4aow_A 237 GQAMLWDLNEG--------------------------------------KHLYTLDGGDI---INALCF-SPNRYWL-CA 273 (340)
T ss_dssp CEEEEEETTTT--------------------------------------EEEEEEECSSC---EEEEEE-CSSSSEE-EE
T ss_pred CeEEEEEeccC--------------------------------------ceeeeecCCce---EEeeec-CCCCcee-ec
Confidence 78999999863 34455555543 788888 9987665 45
Q ss_pred eccCeEEEEecCCCeeeEEEe---------cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 362 SDCGRIFIWKKKGGELIRVIE---------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+.|+.|++||+.++..+..+. +|...|++++|+|++++|++|+.||.|+||++.+|.
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 579999999999888776653 578889999999999999999999999999999875
No 33
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.8e-44 Score=351.07 Aligned_cols=379 Identities=16% Similarity=0.175 Sum_probs=288.8
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccC----cchhhhhhhcccccccceeeeeeeEeecCccce-EEEEEEcC--CCCE
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELG----QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNT--DGDI 75 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~--~~~~ 75 (492)
.+.|+|++++|++++ ++.|+||++.++ +.. ..+.+|.+. |++++|+| ++++
T Consensus 23 ~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~---------------------~~~~~h~~~~v~~~~~sp~~~~~~ 80 (615)
T 1pgu_A 23 HLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV---------------------VQFTGHGSSVVTTVKFSPIKGSQY 80 (615)
T ss_dssp CCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE---------------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred EEEECCCCCEEEEec-CCeEEEEECCCCCCccccc---------------------eEEecCCCceEEEEEECcCCCCCE
Confidence 567899999999998 889999999987 554 778999999 99999999 9999
Q ss_pred EEEecCCCeEEEEECCCC--------ceeeeeccCcCcceEEEEecCCCCCceEEeecCC----CcEEEEecccCCeeee
Q 011160 76 LISGSDDRRVILWDWKTE--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVET 143 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~~~~~ 143 (492)
|++|+.||.|++|++.++ .....+ ..|...|.+++|+| ++++|++++.+ +.|++|+ .++...
T Consensus 81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~- 154 (615)
T 1pgu_A 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLG- 154 (615)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEE-
T ss_pred EEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcce-
Confidence 999999999999999755 444455 67999999999999 99999999987 6888888 344443
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeec---ceEEEEEcCCCCceEE
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV---NLNAIAIDPRNANLFA 220 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~ 220 (492)
.+.+|...|++++|+|+++.++++++.|+.|++||+++++....+.. +.. .|.+++|+|+++.+|+
T Consensus 155 -~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 155 -EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------HHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp -ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------SSCTTCCEEEEEECSTTCCEEE
T ss_pred -eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------cCCCCceEEEEEECCCCCCEEE
Confidence 37899999999999999966899999999999999999887776653 344 7999999997467999
Q ss_pred EecCCCeEEEEecccccccCCCCCCCCccccCCCCcCC---CcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCC
Q 011160 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG---DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPN 296 (492)
Q Consensus 221 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~ 296 (492)
+++.||.|++||+++++.... +.. .|...|.+++|+ ++++|++++ ++.|++||+.++....
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKY--------------IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ 288 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEE--------------CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEeCCCeEEEEECCCCCEeEE--------------ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 999999999999988764322 112 577899999999 999998888 6689999998754332
Q ss_pred CCCCCCC---------------------------------------------Cc--------------------------
Q 011160 297 PPPSSPV---------------------------------------------ST-------------------------- 305 (492)
Q Consensus 297 ~~~~~~~---------------------------------------------~~-------------------------- 305 (492)
.+..... ..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~ 368 (615)
T 1pgu_A 289 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH 368 (615)
T ss_dssp EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE
T ss_pred EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc
Confidence 2211100 00
Q ss_pred -----cccccccCCCCCCCCCCCCCC------------------------------------------------------
Q 011160 306 -----RSEASEMGSDHTSAASPSTAN------------------------------------------------------ 326 (492)
Q Consensus 306 -----~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 326 (492)
......+ +++..++....+.
T Consensus 369 ~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (615)
T 1pgu_A 369 QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 447 (615)
T ss_dssp CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCC
Confidence 0000000 1111111111000
Q ss_pred --------------------Ccc------ccCC-ceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeE
Q 011160 327 --------------------TDV------RIAP-QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (492)
Q Consensus 327 --------------------~~~------~~~~-~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~ 379 (492)
... .... ..+.+|... |.+++| +|++++|++|+.||.|++|++.+++++.
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--v~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 524 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK--PSYISI-SPSETYIAAGDVMGKILLYDLQSREVKT 524 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc--eEEEEE-CCCCCEEEEcCCCCeEEEeeCCCCccee
Confidence 000 0000 333445554 889998 9999999999999999999999999999
Q ss_pred EEec-CCceeEEEeecC----------CCCeEEEeeCCCCEEEeccCCC-CCCc-ccCcccccccccccccccccCchhh
Q 011160 380 VIEA-DRHVVNCIEPHP----------HSTVLASSGIESDIKILTPNAA-DRAT-LPTNIEQFKPKATRWMHHVLSPEDL 446 (492)
Q Consensus 380 ~~~~-h~~~v~~~~~s~----------~~~~l~s~~~dg~i~iw~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (492)
.+.+ |...|++++|+| ++++|++++.||.|++|++.++ +... +.. |.+.+..++++++.
T Consensus 525 ~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------h~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 525 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA--------HKDGVNNLLWETPS 596 (615)
T ss_dssp CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS--------STTCEEEEEEEETT
T ss_pred EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc--------CccceEEEEEcCCC
Confidence 9988 999999999999 9999999999999999999886 3322 222 34556666655544
Q ss_pred H
Q 011160 447 M 447 (492)
Q Consensus 447 ~ 447 (492)
.
T Consensus 597 ~ 597 (615)
T 1pgu_A 597 T 597 (615)
T ss_dssp E
T ss_pred C
Confidence 3
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.6e-43 Score=319.79 Aligned_cols=296 Identities=18% Similarity=0.239 Sum_probs=229.4
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEE
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (492)
++++++|++|+.|++|+|||+.+++... ........+.+|...|++++|+|++.+|++|+.|++|+
T Consensus 36 ~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 36 NEDSPVLISGSRDKTVMIWKLYEEEQNG--------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp TCCCCEEEEEETTSCEEEEEECSSCCSS--------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCcCCccc--------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 4489999999999999999998544220 01123467889999999999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC---
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP--- 163 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--- 163 (492)
+||+.+++.+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.............|...|.+++|+|++.
T Consensus 102 lwd~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 102 LWDLRTGTTYKRF-VGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEETTSSCEEEEE-ECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred EEECCCCcEEEEE-cCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence 9999999988777 79999999999999 99999999999999999997432222211237889999999999862
Q ss_pred ------cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 164 ------HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 164 ------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
.+|++++.|+.|++||.. ......+.. |...|.+++|+|+ +.+|++|+.||.|++||++...
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~----------h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKA----------HESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEETT-TEEEEEEEC----------CSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCS
T ss_pred ccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcC----------ccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCc
Confidence 478999999999999943 333333332 5568999999998 7899999999999999995432
Q ss_pred ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCC--CCCCCCCCccccccccCCC
Q 011160 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN--PPPSSPVSTRSEASEMGSD 315 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 315 (492)
.. .... .+...|.+++|+|++++++++.++.|++|++.+..... .+...+
T Consensus 247 ~~--------------~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~------------- 298 (343)
T 2xzm_R 247 YP--------------QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP------------- 298 (343)
T ss_dssp SC--------------SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS-------------
T ss_pred cc--------------ceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc-------------
Confidence 11 0111 12346999999999999998889999999998753322 100000
Q ss_pred CCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
........+|... |.+++| +|+|++|++|+.||.|++|++.+++
T Consensus 299 --------------~~~~~~~~~~~~~--v~~~~~-sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 299 --------------ITKAEGQKGKNPQ--CTSLAW-NALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp --------------GGGBTTBCCSCCC--EEEEEE-CSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred --------------chhhhhhcCCCCc--eEEEEE-CCCCCeEEEecCCceEEEEEEEccC
Confidence 0011122356554 889998 9999999999999999999987653
No 35
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-43 Score=323.08 Aligned_cols=278 Identities=19% Similarity=0.250 Sum_probs=236.0
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++|+.||+|+|||..+++.. ..+..|...|.+++|+|++.+|++|+.|
T Consensus 69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~---------------------~~~~~~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 69 CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE---------------------HAVTMPCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEE---------------------EEEECSSSCCCEEEECTTSSEEEEESTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCcc---------------------eEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 4568899999999999999999999877655 5677789999999999999999999999
Q ss_pred CeEEEEECCCCc------eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEE
Q 011160 83 RRVILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 83 ~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i 156 (492)
+.+++|++.... ....+ .+|...|.+++|+| ++..|++++.|++|++||+.+++.+.. +.+|...|.++
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~~ 202 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQS--FHGHGADVLCL 202 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEE
T ss_pred CCEEEEEEeccccccccccceee-eccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEE--EcCCCCCeEEE
Confidence 999999986532 22333 67999999999999 999999999999999999998877655 88999999999
Q ss_pred EEcCCC-CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 157 AIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 157 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
+|+|+. ..+|++|+.||.|++||+++++.+..+.. |...|++++|+|+ +.+|++++.|++|++||++.
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~----------h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET----------HESDVNSVRYYPS-GDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----------CCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCC
Confidence 998852 26899999999999999999988776653 5568999999998 78999999999999999987
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
.+..... ....+...+.+++|+|++++|++++ ++.|++||+.++
T Consensus 272 ~~~~~~~-------------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---------------------- 316 (354)
T 2pbi_B 272 DREVAIY-------------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---------------------- 316 (354)
T ss_dssp TEEEEEE-------------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------------------
T ss_pred CcEEEEE-------------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC----------------------
Confidence 6532110 0111234689999999999999988 668999999763
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
..+..+.+|... |.+++| +|+|++|++|+.||+|+||+
T Consensus 317 ----------------~~~~~l~~h~~~--v~~l~~-spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 ----------------SRVSILFGHENR--VSTLRV-SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ----------------SEEEEECCCSSC--EEEEEE-CTTSSCEEEEETTSEEEEEC
T ss_pred ----------------ceEEEEECCCCc--EEEEEE-CCCCCEEEEEcCCCCEEecC
Confidence 445677888887 899998 99999999999999999996
No 36
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-44 Score=340.15 Aligned_cols=322 Identities=12% Similarity=0.054 Sum_probs=229.2
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC------CCEEEEec
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD------GDILISGS 80 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~ 80 (492)
+|+++.+++++.|++|+||++.++++.. .....+.+|.+.|.+++|+|+ +.+||+++
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~-----------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s 232 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHC-----------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS 232 (524)
T ss_dssp ------------CEEEEEEEEETTTCCE-----------------EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCc-----------------eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence 4555667778899999999998776431 122446678899999999997 57999999
Q ss_pred CCCeEEEEECCCCcee-----------eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecC
Q 011160 81 DDRRVILWDWKTERVK-----------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 149 (492)
.||+|+|||+.++... ..+ .+|...|++++|+| ++ .|++|+.||+|++||+.++... ...+.+|
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~--~~-~lasgs~DgtV~lWD~~~~~~~-~~~~~~H 307 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLS--PT-TVVCGFKNGFVAEFDLTDPEVP-SFYDQVH 307 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESS--SS-EEEEEETTSEEEEEETTBCSSC-SEEEECS
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecC--CC-eEEEEeCCCEEEEEECCCCCCc-eEEeecc
Confidence 9999999999876421 233 68999999999998 54 7999999999999999876432 2337889
Q ss_pred CCceEEE--EEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCe
Q 011160 150 QGRAHKL--AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (492)
Q Consensus 150 ~~~v~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (492)
...|+++ +|+|+++++|++++.|++|++||+++++....+..+. ....+.+++|+|+ +..+++++.|++
T Consensus 308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------~~~~v~~v~fsp~-~~~l~s~~~d~t 378 (524)
T 2j04_B 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------RGSNLVPVVYCPQ-IYSYIYSDGASS 378 (524)
T ss_dssp SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--------SCCSCCCEEEETT-TTEEEEECSSSE
T ss_pred cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc--------ccCcccceEeCCC-cCeEEEeCCCCc
Confidence 9999999 5677764689999999999999999887766554221 1124788999998 678999999999
Q ss_pred EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCcc
Q 011160 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (492)
Q Consensus 228 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 306 (492)
|++||++++... ....+|...|++++|+|++++|++++ |++|++|++...
T Consensus 379 v~lwd~~~~~~~---------------~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-------------- 429 (524)
T 2j04_B 379 LRAVPSRAAFAV---------------HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-------------- 429 (524)
T ss_dssp EEEEETTCTTCC---------------EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS--------------
T ss_pred EEEEECcccccc---------------eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh--------------
Confidence 999999876421 22345888999999999999999998 668999997542
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCceeecc---ccceeeeeEEeecCCCcEEEEeeccCeEEEEecC-CCeeeEEEe
Q 011160 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGH---RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIE 382 (492)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~-~~~~~~~~~ 382 (492)
....+..+ .....+.+++| +|+|+.+.. .. .+++|... ++.++..+.
T Consensus 430 -------------------------~~~~~~~~~~~~~~~~v~~v~~-sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~ 480 (524)
T 2j04_B 430 -------------------------LLHGIKNSSATQKSLRLWKWDY-SIKDDKYRI-DS--SYEVYPLTVNDVSKAKID 480 (524)
T ss_dssp -------------------------TTTCC------CCCCEEEECBC-CSSSCEEEE-CC--CCCCCC------------
T ss_pred -------------------------hccccccCccceeeeEEEEecc-CCCCCeEEc-cC--CceecccccCCcceeeec
Confidence 11111110 01113678888 999985532 22 23444433 577888899
Q ss_pred cCCceeEEEeecCCCC---eEEEeeCCCCEEEeccCCC
Q 011160 383 ADRHVVNCIEPHPHST---VLASSGIESDIKILTPNAA 417 (492)
Q Consensus 383 ~h~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~~ 417 (492)
+|...|++++|+|+++ +||+|+.||.|+||++...
T Consensus 481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 9999999999999965 8999999999999998764
No 37
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.5e-44 Score=330.27 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=235.1
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++|+.||+|+|||..+++.. ..+.+|...|.+++|+|++++|++|+.|
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---------------------~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNALTSQKT---------------------HAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEE---------------------EEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCccc---------------------eEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 4568999999999999999999999988766 6788999999999999999999999999
Q ss_pred CeEEEEECCCCc------eeeeeccCcCcceEEEEecCCCC-CceEEeecCCCcEEEEecccCCeeeeEE---eecCCCc
Q 011160 83 RRVILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKL---LGKHQGR 152 (492)
Q Consensus 83 ~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~~~~~~~ 152 (492)
+.|++|++.+.. .....+.+|...|.++.|+| + +..|++|+.|++|++||+.++..+.... ..+|...
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS--SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEec--CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 999999987532 12233478999999999999 5 5679999999999999999887765421 1578999
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
|.+++|++....+|++|+.|+.|++||++. ......+.. |...|++++|+|+ +.+|++|+.||+|++|
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~----------h~~~v~~v~~~p~-~~~l~s~s~D~~i~lw 276 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG----------HEGDINSVKFFPD-GQRFGTGSDDGTCRLF 276 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC----------CSSCCCEEEECTT-SSEEEEECSSSCEEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC----------cCCCeEEEEEecC-CCeEEEEcCCCeEEEE
Confidence 999999884447999999999999999984 344444432 5568999999998 7899999999999999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
|+++++........ ......+...|.+++|+|+|++|++++ ++.|++||...+....
T Consensus 277 d~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-------------- 334 (380)
T 3iz6_a 277 DMRTGHQLQVYNRE--------PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL-------------- 334 (380)
T ss_dssp ETTTTEEEEEECCC--------CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE--------------
T ss_pred ECCCCcEEEEeccc--------ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE--------------
Confidence 99987644322110 011112334589999999999999998 6689999987642110
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
.......+|... |.+++| +|+|++|++|+.||+|+||++...+
T Consensus 335 --------------------~~~~~~~~h~~~--v~~l~~-s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 335 --------------------NLGTLQNSHEGR--ISCLGL-SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp --------------------EECCSCSSCCCC--CCEEEE-CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred --------------------EEecccCCCCCc--eEEEEE-CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 001112567766 899998 9999999999999999999987654
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-42 Score=323.95 Aligned_cols=299 Identities=15% Similarity=0.138 Sum_probs=246.7
Q ss_pred eeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc------eeeeeccCcCcceEEEEecCCCC----C--
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTD----D-- 118 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~----~-- 118 (492)
+.....+.+|.+.|++++|+| ++|++|+.||.|++|++.+++ .+..+ .+|...|.+++|+| + +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~g~~ 80 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQ--AIERDAFE 80 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEE--EEETTTEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEec--ccccCCcc
Confidence 355678899999999999998 799999999999999999887 55666 68999999999999 8 8
Q ss_pred -ceEEeecCCCcEEEEecccCCe-----eeeEEeecC-----CCceEEEEEc----CCCCcE-EEEEcCCCcEEEEeCCC
Q 011160 119 -RSIVTCAADGQVRHAQILERGG-----VETKLLGKH-----QGRAHKLAIE----PGSPHV-FYTCGEDGLVQHFDLRT 182 (492)
Q Consensus 119 -~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~-----~~~v~~i~~~----~~~~~~-l~~~~~dg~i~iwd~~~ 182 (492)
.+|++++.||.|++|++.++.. ... +..| ...|.+++|+ |++ .. |++++.||.|++||+++
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEE--ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred ccEEEEEcCCCCEEEEEccCCccccccccee--ecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence 9999999999999999988775 433 6677 5899999999 998 46 89999999999999998
Q ss_pred ------CCccc-----eeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCcccc
Q 011160 183 ------GAATE-----LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (492)
Q Consensus 183 ------~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 251 (492)
++.+. .+..... ....+...+.+++|+|+ + +|++++.||.|++||+++++....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~---------- 222 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVE---SPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYN---------- 222 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEEC---CSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEE----------
T ss_pred cccccccceeeccCcceeeeeec---cccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEE----------
Confidence 65554 3321000 00114567999999998 6 999999999999999988653322
Q ss_pred CCCCcCCC---c---ccceEEEEEcCCCCeeEeec-C---CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 252 CPPNLIGD---E---QVGITGLAFSDQSELLVSYN-D---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 252 ~~~~~~~~---~---~~~i~~~~~s~~~~~l~~~~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
... | ...|.+++|+|++++|++++ + +.|++||+.++
T Consensus 223 -----~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----------------------------- 268 (397)
T 1sq9_A 223 -----FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----------------------------- 268 (397)
T ss_dssp -----EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-----------------------------
T ss_pred -----EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-----------------------------
Confidence 222 5 77899999999999999988 5 68999999874
Q ss_pred CCCCCCccccCCceeec-------------cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe------
Q 011160 322 PSTANTDVRIAPQVYKG-------------HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE------ 382 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~------ 382 (492)
..+..+.+ |... |.+++| +|++++|++++.||.|++||+.+++++..+.
T Consensus 269 ---------~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 336 (397)
T 1sq9_A 269 ---------ERIGSLSVPTHSSQASLGEFAHSSW--VMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336 (397)
T ss_dssp ---------CEEEEECBC--------CCBSBSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred ---------cccceeccCcccccccccccccCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc
Confidence 23344444 6665 899998 9999999999999999999999999999999
Q ss_pred cC---------------CceeEEEeecCCC----------CeEEEeeCCCCEEEeccCCCC
Q 011160 383 AD---------------RHVVNCIEPHPHS----------TVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 383 ~h---------------~~~v~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+| ...|++++|+|++ ++|++++.||.|++|++.+++
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 337 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 88 8999999999998 799999999999999998763
No 39
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-42 Score=343.26 Aligned_cols=377 Identities=17% Similarity=0.187 Sum_probs=280.2
Q ss_pred CCCCCC--CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 3 DASNNN--NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 3 ~~~~~~--~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
.+.|+| ++++|++|+.||.|+|||+.+++.. ..........+.+|...|.+++|+|++++|++++
T Consensus 69 ~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------------NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------------TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECcCCCCCEEEEecCCCEEEEEeCCCCccc-------------ccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 356889 9999999999999999999866211 0112234467888999999999999999999999
Q ss_pred CC----CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCc-eEEeecCCCcEEEEecccCCeeeeEEeecCCC---c
Q 011160 81 DD----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQG---R 152 (492)
Q Consensus 81 ~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~ 152 (492)
.+ +.|++|| .++.+..+ .+|...|.+++|+| ++. .|++++.|+.|++||+.+.+.... +..|.. .
T Consensus 136 ~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~~~~ 208 (615)
T 1pgu_A 136 EGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSAS--DRTHHKQGSF 208 (615)
T ss_dssp CCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEE--ECSSSCTTCC
T ss_pred cCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeee--ecccCCCCce
Confidence 87 6888888 56666666 78999999999999 887 799999999999999988766554 778988 9
Q ss_pred eEEEEEcCC-CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 153 AHKLAIEPG-SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 153 v~~i~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
|++++|+|+ + .+|++++.||.|++||+++++.+..+.... ..+...|.+++|+ + +.+|++++.|+.|++|
T Consensus 209 v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 209 VRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQ------EPVQGGIFALSWL-D-SQKFATVGADATIRVW 279 (615)
T ss_dssp EEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTT------BCCCSCEEEEEES-S-SSEEEEEETTSEEEEE
T ss_pred EEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccc------cccCCceEEEEEc-C-CCEEEEEcCCCcEEEE
Confidence 999999999 7 689999999999999999998877662100 0156689999999 6 7899999999999999
Q ss_pred ecccccccCCCCCCC-Cc------------------------cc-----cCCCCcC------------------------
Q 011160 232 DIRKYKWDGSTDFGQ-PA------------------------DY-----FCPPNLI------------------------ 257 (492)
Q Consensus 232 d~~~~~~~~~~~~~~-~~------------------------~~-----~~~~~~~------------------------ 257 (492)
|+++++......... +. .. .......
T Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i 359 (615)
T 1pgu_A 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRI 359 (615)
T ss_dssp ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCE
T ss_pred ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeE
Confidence 998765433222110 00 00 0000000
Q ss_pred ---------CCcc-------------------------------------------------------------------
Q 011160 258 ---------GDEQ------------------------------------------------------------------- 261 (492)
Q Consensus 258 ---------~~~~------------------------------------------------------------------- 261 (492)
..|.
T Consensus 360 ~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 439 (615)
T 1pgu_A 360 MEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 439 (615)
T ss_dssp EETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCce
Confidence 0111
Q ss_pred -------cceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCC-CCCCCCCCCccccccccCCCCCCCCCCCCCCC----
Q 011160 262 -------VGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGP-NPPPSSPVSTRSEASEMGSDHTSAASPSTANT---- 327 (492)
Q Consensus 262 -------~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 327 (492)
..+.+++|+ +++|++++ ++.|++|++.++... ..+. ..........++|++..+++...+..
T Consensus 440 ~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 515 (615)
T 1pgu_A 440 IKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYISISPSETYIAAGDVMGKILLY 515 (615)
T ss_dssp EEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSS--CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccC--CccCceEEEEECCCCCEEEEcCCCCeEEEe
Confidence 223333333 44555555 457889988775443 2222 22233445566777777766554432
Q ss_pred --ccccCCceeec-cccceeeeeEEeecC----------CCcEEEEeeccCeEEEEecCCC-eeeEEEecCCceeEEEee
Q 011160 328 --DVRIAPQVYKG-HRNCVTVKGVNFFGP----------KCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEP 393 (492)
Q Consensus 328 --~~~~~~~~~~~-~~~~~~v~~~~~~s~----------~g~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~ 393 (492)
.....+..+.+ |... |.+++| +| ++++|++|+.||.|++|++.++ +++..+.+|...|++++|
T Consensus 516 ~~~~~~~~~~~~~~h~~~--v~~~~~-sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~ 592 (615)
T 1pgu_A 516 DLQSREVKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 592 (615)
T ss_dssp ETTTTEEEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEE
T ss_pred eCCCCcceeEeecCCCCc--eeEEEE-cCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEE
Confidence 22334455555 7665 899999 99 9999999999999999999998 788999999999999999
Q ss_pred cCCCCeEEEeeCCCCEEEeccCC
Q 011160 394 HPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 394 s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+|+++ |++++.||.|++|++..
T Consensus 593 s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 593 ETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EETTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCC-eEEecCCceEEEEeeec
Confidence 99999 99999999999999875
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.4e-43 Score=370.19 Aligned_cols=391 Identities=19% Similarity=0.256 Sum_probs=303.3
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhh-----------h------hcccccccceeee------eeeEeecC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNF-----------A------LRRRASEDLVLRL------GIYAKLDK 59 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~-----------~------~~~~~~~~~~~~~------~~~~~~~~ 59 (492)
.+.|+|++++|++|+.||.|+|||+.+++.+.... . .+++++.+..+++ .....+.+
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~ 741 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence 35689999999999999999999999887664411 1 1344555555554 45678889
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee-----------------------------------------
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLS----------------------------------------- 98 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------------------- 98 (492)
|.+.|++++|+|++++|++++.||.|++||+.++.....
T Consensus 742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 999999999999999999999999999999876643222
Q ss_pred -------------eccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcE
Q 011160 99 -------------FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (492)
Q Consensus 99 -------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 165 (492)
+..+|...|.+++|+| ++.++++++.+|.|++|++.++..... +.+|...|++++|+|++ ..
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg-~~ 896 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSP--YDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVMFSPDG-SS 896 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECS--STTEEEEECSSSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeee--cCCCccceEEEEECCCC-CE
Confidence 1236788999999999 999999999999999999988766654 78999999999999999 58
Q ss_pred EEEEcCCCcEEEEeCCCCCcc-----------------------------------------------------------
Q 011160 166 FYTCGEDGLVQHFDLRTGAAT----------------------------------------------------------- 186 (492)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~----------------------------------------------------------- 186 (492)
|++++.||.|++|++.+....
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 899999999999996531100
Q ss_pred ---------ceeecCCCCC-CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCc
Q 011160 187 ---------ELFTCRPIDD-RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (492)
Q Consensus 187 ---------~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (492)
..+....... .....|...|.+++|+|+ +.++++++.||.|++||+.+++.. .
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~----------------~ 1039 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYV----------------F 1039 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEE----------------C
T ss_pred EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceE----------------E
Confidence 0000000000 000125567999999998 789999999999999999887642 1
Q ss_pred CCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC------ccc
Q 011160 257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT------DVR 330 (492)
Q Consensus 257 ~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 330 (492)
...|...|.+++|+|++.+++.+.++.|++||+.++.....+..+.. ......++|++..+++...+.. ...
T Consensus 1040 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG--TVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS--CCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC--cEEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 23467889999999988877777788999999998776554443322 2344556777777776555433 334
Q ss_pred cCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE---------ecCCceeEEEeecCCCCeEE
Q 011160 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI---------EADRHVVNCIEPHPHSTVLA 401 (492)
Q Consensus 331 ~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~~~~s~~~~~l~ 401 (492)
.....+.+|... |.+++| +|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++++|+
T Consensus 1118 ~~~~~l~~h~~~--v~~~~~-s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 1194 (1249)
T 3sfz_A 1118 SPLHELKGHNGC--VRCSAF-SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194 (1249)
T ss_dssp SCSBCCCCCSSC--EEEEEE-CSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEE
T ss_pred ceeeeeccCCCc--EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEE
Confidence 566778888886 899998 999999999999999999999999877655 67889999999999999999
Q ss_pred EeeCCCCEEEeccCCCCCCcc
Q 011160 402 SSGIESDIKILTPNAADRATL 422 (492)
Q Consensus 402 s~~~dg~i~iw~~~~~~~~~~ 422 (492)
+++ |.|++|++.+++....
T Consensus 1195 s~~--g~v~vwd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1195 SAG--GYLKWWNVATGDSSQT 1213 (1249)
T ss_dssp EES--SSEEEBCSSSCBCCCC
T ss_pred ECC--CeEEEEECCCCceeee
Confidence 986 8999999998876543
No 41
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=314.03 Aligned_cols=303 Identities=17% Similarity=0.204 Sum_probs=253.5
Q ss_pred eeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.||.|+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDC--FTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcC--CCCEEEEEeCCCeEE
Confidence 344678899999999999999999999999999999999999988877 78999999999999 999999999999999
Q ss_pred EEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCCccceeecCCCCC---CCcceee
Q 011160 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDD---RRNYMTV 203 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~ 203 (492)
+||+.+++.... +. +...|.+++|+|++ .++++++.+ +.|++||++.......+....... ...+...
T Consensus 100 iwd~~~~~~~~~--~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 100 LWDVSNGQCVAT--WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEETTTCCEEEE--EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEECCCCcEEEE--ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 999998877665 43 88899999999999 578888888 999999998876554433221111 0111122
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D 281 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 281 (492)
..+.+++|+|+ +.+|++++.+|.|++||+++ .+.. .....|...|.+++|+|++++|++++ +
T Consensus 176 ~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 176 DAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYV---------------DSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp CCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEE---------------EEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeE---------------EEEecCCCceeEEEECCCCCEEEEecCC
Confidence 27999999998 78999999999999999987 3321 22334678899999999999999888 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe
Q 011160 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (492)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg 361 (492)
+.|++||+.++ .....+. +... +..++| +|++++++++
T Consensus 240 ~~i~v~d~~~~--------------------------------------~~~~~~~-~~~~--~~~~~~-~~~~~~l~~~ 277 (369)
T 3zwl_B 240 TNSFLVDVSTL--------------------------------------QVLKKYE-TDCP--LNTAVI-TPLKEFIILG 277 (369)
T ss_dssp SEEEEEETTTC--------------------------------------CEEEEEE-CSSC--EEEEEE-CSSSSEEEEE
T ss_pred ceEEEEECCCC--------------------------------------ceeeeec-CCCC--ceeEEe-cCCCceEEEe
Confidence 78999999873 3334444 3333 788998 9999999999
Q ss_pred eccC--------------eEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 362 SDCG--------------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 362 ~~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
+.++ .|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 9888 899999999999999999999999999999999999999999999999987643
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=350.72 Aligned_cols=384 Identities=10% Similarity=0.080 Sum_probs=268.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+| +++|++++.|++|+|||+.+++.+ ..+. |.+.|++++|+|++++|++|+.|
T Consensus 63 ~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~---------------------~~~~-~~~~V~~v~~sp~g~~l~sgs~d 119 (902)
T 2oaj_A 63 EMRFVK-GIYLVVINAKDTVYVLSLYSQKVL---------------------TTVF-VPGKITSIDTDASLDWMLIGLQN 119 (902)
T ss_dssp EEEEET-TTEEEEEETTCEEEEEETTTCSEE---------------------EEEE-CSSCEEEEECCTTCSEEEEEETT
T ss_pred EEEEcC-CCEEEEEECcCeEEEEECCCCcEE---------------------EEEc-CCCCEEEEEECCCCCEEEEEcCC
Confidence 356777 789999999999999999988766 4444 67899999999999999999999
Q ss_pred CeEEEEECCCCceee----------eeccCcCcceEEEEecCCCC-CceEEeecCCCcEEEEecccCCeeeeEEeecC--
Q 011160 83 RRVILWDWKTERVKL----------SFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKH-- 149 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-- 149 (492)
|.|++||+.++.... ....+|...|.+++|+| + +..|++|+.||.| +||+.+++.... +..|
T Consensus 120 g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp--~~~~~l~~g~~dg~v-lWd~~~~~~~~~--~~~~~~ 194 (902)
T 2oaj_A 120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP--RDIGTVLISYEYVTL-TYSLVENEIKQS--FIYELP 194 (902)
T ss_dssp SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET--TEEEEEEEECSSCEE-EEETTTTEEEEE--ECCCBC
T ss_pred CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc--CCCCEEEEEeCCCcE-EEECCCCceEEE--EecccC
Confidence 999999999877531 12367999999999999 6 4789999999999 999988766544 4333
Q ss_pred ----------------CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC--------Ccceeecc
Q 011160 150 ----------------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR--------RNYMTVVN 205 (492)
Q Consensus 150 ----------------~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 205 (492)
...|++++|+|++ .+|++++.||.|++||+++++.+..........+ ....+...
T Consensus 195 ~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~ 273 (902)
T 2oaj_A 195 PFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAK 273 (902)
T ss_dssp TTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCE
T ss_pred CcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCC
Confidence 5789999999998 5899999999999999999876543111000000 00012335
Q ss_pred eEEEEEc----CCCCceEEEecCC-----CeEEEEec-------------------------------------------
Q 011160 206 LNAIAID----PRNANLFAVAGSD-----EYTRLYDI------------------------------------------- 233 (492)
Q Consensus 206 v~~~~~~----p~~~~~l~~~~~d-----g~v~i~d~------------------------------------------- 233 (492)
|.+++|+ |+++.++++|+.+ ..+.+|++
T Consensus 274 V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 353 (902)
T 2oaj_A 274 ISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPR 353 (902)
T ss_dssp EEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCS
T ss_pred eeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCC
Confidence 7778774 3323456666544 25666663
Q ss_pred ----------------------------ccccccCCC-------CCC-CCcc------------------ccCCCCcCCC
Q 011160 234 ----------------------------RKYKWDGST-------DFG-QPAD------------------YFCPPNLIGD 259 (492)
Q Consensus 234 ----------------------------~~~~~~~~~-------~~~-~~~~------------------~~~~~~~~~~ 259 (492)
.++...... ... ..+. .........+
T Consensus 354 ~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G 433 (902)
T 2oaj_A 354 QSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKG 433 (902)
T ss_dssp SCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCC
T ss_pred CCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccC
Confidence 111100000 000 0000 0000011223
Q ss_pred cccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCC--CC-------CCCCCccccccccCCCCCCCCCCCCCCCcc
Q 011160 260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP--PP-------SSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (492)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (492)
|...+.+++|+|++++|++++ |++|++||+.++..... +. ............++|+++.+++...+...+
T Consensus 434 ~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~ 513 (902)
T 2oaj_A 434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVV 513 (902)
T ss_dssp SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEE
Confidence 334455566788999999999 67899999998743211 00 002233455667788888887765554322
Q ss_pred c---------------------------------------------------cCCceeeccccceeeeeEEeecCCCcEE
Q 011160 330 R---------------------------------------------------IAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (492)
Q Consensus 330 ~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~s~~g~~l 358 (492)
. .++..+.+|... |++++| +|+| +|
T Consensus 514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svaf-SpdG-~l 589 (902)
T 2oaj_A 514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINN-SNIG-FV 589 (902)
T ss_dssp EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEE-CBTS-EE
T ss_pred EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEe-cCCc-EE
Confidence 1 124566778876 999998 9999 99
Q ss_pred EEeeccCeEEEEecCCCeeeE--E---Ee-cCCceeEEEeec-----CCC---CeEEEeeCCCCEEEecc---CCCCC
Q 011160 359 VSGSDCGRIFIWKKKGGELIR--V---IE-ADRHVVNCIEPH-----PHS---TVLASSGIESDIKILTP---NAADR 419 (492)
Q Consensus 359 ~sg~~dg~i~iwd~~~~~~~~--~---~~-~h~~~v~~~~~s-----~~~---~~l~s~~~dg~i~iw~~---~~~~~ 419 (492)
|+|+.|++|+|||+.++..+. . +. +|.+.|++++|+ ||| ++|++++.|++|++|++ .+++.
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF 667 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence 999999999999998887664 2 32 888999999999 886 79999999999999999 55554
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6e-42 Score=341.41 Aligned_cols=294 Identities=14% Similarity=0.231 Sum_probs=238.9
Q ss_pred eeeeEeecCccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCc-----eeeeeccCcCcceEEEEecCCCCCceEEee
Q 011160 51 LGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTER-----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (492)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 124 (492)
+.....+++|.+.|++++|+|++ ++|+||+.|++|++|++.+.. ....+ .+|...|.+++|+| ++++|++|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~--~g~~l~sg 448 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSS--DGQFALSG 448 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECT--TSSEEEEE
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECC--CCCEEEEE
Confidence 35567789999999999999875 799999999999999987643 22334 79999999999999 99999999
Q ss_pred cCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeec
Q 011160 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (492)
Q Consensus 125 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
+.||.|++||+.++..... +.+|...|.+++|+|++ ..|++++.|++|++||+........... ...|..
T Consensus 449 s~Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~-------~~~h~~ 518 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEG-------GEGHRD 518 (694)
T ss_dssp ETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSS-------TTSCSS
T ss_pred eCCCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccC-------CCCCCC
Confidence 9999999999988766654 78999999999999999 5789999999999999865433222111 111556
Q ss_pred ceEEEEEcCCC-CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC
Q 011160 205 NLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (492)
Q Consensus 205 ~v~~~~~~p~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~ 282 (492)
.|.+++|+|++ ...+++++.|+.|++||+++.+.. ....+|...|.+++|+|++++|++++ ++
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~---------------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR---------------STLAGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE---------------EEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 79999999974 258999999999999999876532 23446788999999999999999998 67
Q ss_pred cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee
Q 011160 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 283 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
.|++||+.++ ..+..+..+. .+.+++| +|++.+|++++
T Consensus 584 ~i~iwd~~~~--------------------------------------~~~~~~~~~~---~v~~~~~-sp~~~~l~~~~ 621 (694)
T 3dm0_A 584 VVLLWDLAEG--------------------------------------KKLYSLEANS---VIHALCF-SPNRYWLCAAT 621 (694)
T ss_dssp BCEEEETTTT--------------------------------------EEEECCBCSS---CEEEEEE-CSSSSEEEEEE
T ss_pred eEEEEECCCC--------------------------------------ceEEEecCCC---cEEEEEE-cCCCcEEEEEc
Confidence 8999999874 2223333332 2889998 99999888776
Q ss_pred ccCeEEEEecCCCeeeEEEecCCc-------------------eeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 363 DCGRIFIWKKKGGELIRVIEADRH-------------------VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h~~-------------------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
++.|+|||+.+++.+..+..+.. .+++++|+|++++|++|+.||+|+||++.
T Consensus 622 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 622 -EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 56699999999998887754321 37899999999999999999999999985
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-42 Score=325.50 Aligned_cols=319 Identities=13% Similarity=0.131 Sum_probs=225.9
Q ss_pred eeeEeecCccceEEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeee-ccCcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
.+.....+|...|+||+|+| ++++||+|+.||.|+|||+.+++....+ ..+|...|++|+|+|. ++.+|++|+.||+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~ 188 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGT 188 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCE
Confidence 44456677899999999999 5679999999999999999877643332 2689999999999982 5789999999999
Q ss_pred EEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
|++||+.............+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+.. |...|.++
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~~~~----------h~~~v~~v 256 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWNLRM----------HKKKVTHV 256 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCCSBC----------CSSCEEEE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEEEec----------ccceEEee
Confidence 999999765433322222344567899999999 68999999999999998754 3333322 55689999
Q ss_pred EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEe
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d 288 (492)
+|+|++..+|++++.|+.|++||+++.+.... ......|...|++++|+|++++|++++ ++.|++||
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKAS------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSC------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred eecCCCceEEEEecCcceeeEEecccccccce------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence 99998667899999999999999987653221 122345788999999999999999988 67899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe-eccCeE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRI 367 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg-~~dg~i 367 (492)
+.++.....+..++..... .............. +..+.+ ++++.+++++ ..++.|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~--~~~~~~-~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQ---------------------HLTPIKAAWHPRYN--LIVVGR-YPDPNFKSCTPYELRTI 380 (435)
T ss_dssp SSSSSSEEEECCCCCCCCS---------------------SSCCCBCEECSSSS--CEEEEC-CCCTTSCCSSTTCCCCE
T ss_pred CCCCccceEEecccccccc---------------------cceeEEEEEcCCCC--EEEEEE-cCCCCeEEEEecCCCEE
Confidence 9875332211100000000 00000000000000 222333 4444433332 244689
Q ss_pred EEEecCCCeeeEEEe-cCCceeEEE-eecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 368 FIWKKKGGELIRVIE-ADRHVVNCI-EPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 368 ~iwd~~~~~~~~~~~-~h~~~v~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
++||..+++++..+. +|...|.++ +|+|+|++|++|+ |++|+||+++.++..
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 999999999988875 677788887 6999999999876 889999999987653
No 45
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=318.02 Aligned_cols=333 Identities=17% Similarity=0.191 Sum_probs=253.8
Q ss_pred CcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC-CCCEEEEecCCCeEEEEECCCCcee
Q 011160 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVK 96 (492)
Q Consensus 18 ~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~ 96 (492)
.++.+++|++++++.. ..+.+|.+.|++++|+| ++++|++|+.||.|++|++.++...
T Consensus 21 ~~~~~~v~~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~ 79 (408)
T 4a11_B 21 AESTRRVLGLELNKDR---------------------DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQ 79 (408)
T ss_dssp HHHHHHHHTEEECTTE---------------------EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSS
T ss_pred ccCcceeeccccCcce---------------------eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 4567888888876655 67889999999999999 9999999999999999999987765
Q ss_pred eeec------------cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC-
Q 011160 97 LSFH------------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP- 163 (492)
Q Consensus 97 ~~~~------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~- 163 (492)
..+. .+|...|.+++|+|. ++.+|++++.||.|++|++.++..... + .+...+.++.++|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 80 SYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADV--F-NFEETVYSHHMSPVSTK 155 (408)
T ss_dssp SCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEE--E-ECSSCEEEEEECSSCSS
T ss_pred ceEeccccccccccccccCCCcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCcccee--c-cCCCceeeeEeecCCCC
Confidence 4442 259999999999982 456899999999999999988776554 3 3778899999998643
Q ss_pred -cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC-C
Q 011160 164 -HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG-S 241 (492)
Q Consensus 164 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~-~ 241 (492)
.++++++.++.|++||+++++....+.. +...|.+++|+|++..+|++++.||.|++||+++..... .
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQG----------HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECC----------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecC----------CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 3899999999999999999887766653 556899999999854479999999999999998765211 1
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
..................|...|.+++|+|++++|++++ ++.|++||+.++.........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------- 286 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK------------------- 286 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-------------------
T ss_pred ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc-------------------
Confidence 111111111122333456788999999999999999888 668999999886433221100
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeE
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL 400 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 400 (492)
........ +..... ...+..+++++.++.|++||+.+++++..+.+|.+.|++++|+|++++|
T Consensus 287 --------------~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 287 --------------VCNNSKKG--LKFTVS-CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp --------------CCCCCSSC--CCCEEC-CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred --------------cccccccc--ceeEEe-cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence 00000000 111111 3445566777889999999999999999999999999999999999999
Q ss_pred EEeeCCCCEEEeccCCCCCCc
Q 011160 401 ASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 401 ~s~~~dg~i~iw~~~~~~~~~ 421 (492)
++++.||.|++|++.+++...
T Consensus 350 ~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEEETTSCEEEEEECC-----
T ss_pred EEECCCCeEEEEeCCCCCccC
Confidence 999999999999999887654
No 46
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-41 Score=320.82 Aligned_cols=306 Identities=21% Similarity=0.291 Sum_probs=259.9
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeE
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (492)
+.+++++|++|+.||+|++||+.+++.+ ..+.+|.+.|.+++|+ +++|++|+.||+|
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCL---------------------RTLVGHTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEE---------------------EECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEE---------------------EEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence 4457899999999999999999988776 7788999999999998 6799999999999
Q ss_pred EEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcE
Q 011160 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (492)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 165 (492)
++||+.+++.+..+ .+|...|.+++|+ +..|++++.||.|++||+.+++.... +.+|...|.++++ ++ ..
T Consensus 182 ~vwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~--~~-~~ 251 (445)
T 2ovr_B 182 KVWNAETGECIHTL-YGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQY--DG-RR 251 (445)
T ss_dssp EEEETTTTEEEEEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE--EECCSSCEEEEEE--CS-SC
T ss_pred EEEECCcCcEEEEE-CCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE--EcCCcccEEEEEE--CC-CE
Confidence 99999999988877 7899999999995 46799999999999999998877655 7889999999999 45 57
Q ss_pred EEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCC
Q 011160 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (492)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 245 (492)
+++++.||.|++||+++++.+..+.. +...+.+++| + +.++++++.|+.|++||+++++...
T Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~--~-~~~l~~~~~d~~i~i~d~~~~~~~~----- 313 (445)
T 2ovr_B 252 VVSGAYDFMVKVWDPETETCLHTLQG----------HTNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCIH----- 313 (445)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECC----------CSSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEEE-----
T ss_pred EEEEcCCCEEEEEECCCCcEeEEecC----------CCCceEEEEE--C-CCEEEEEeCCCeEEEEECCCCCEEE-----
Confidence 89999999999999999887776653 4557899999 3 5799999999999999998876432
Q ss_pred CCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
....|...+.++.++ +.+|++++ ++.|++||+.++
T Consensus 314 ----------~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~-------------------------------- 349 (445)
T 2ovr_B 314 ----------TLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG-------------------------------- 349 (445)
T ss_dssp ----------EECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------------------------------
T ss_pred ----------EEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC--------------------------------
Confidence 233466778888774 56888877 778999999774
Q ss_pred CCCccccCCceeec---cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE-----ecCCceeEEEeecCC
Q 011160 325 ANTDVRIAPQVYKG---HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHPH 396 (492)
Q Consensus 325 ~~~~~~~~~~~~~~---~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~s~~ 396 (492)
..+..+.+ |... |.++.| + +++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+
T Consensus 350 ------~~~~~~~~~~~~~~~--v~~~~~-~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 350 ------QCLQTLQGPNKHQSA--VTCLQF-N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp ------CEEEEECSTTSCSSC--EEEEEE-C--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred ------cEEEEEccCCCCCCC--EEEEEE-C--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 33444554 5444 888887 4 679999999999999999999999888 467889999999999
Q ss_pred CCeEEEeeCCCC----EEEeccCCC
Q 011160 397 STVLASSGIESD----IKILTPNAA 417 (492)
Q Consensus 397 ~~~l~s~~~dg~----i~iw~~~~~ 417 (492)
+.+|++++.||+ |.|||+...
T Consensus 419 ~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 KLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999998 999999764
No 47
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-41 Score=305.12 Aligned_cols=278 Identities=19% Similarity=0.322 Sum_probs=235.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++|+.||.|++|+..+++.. ..+.+|...|.+++|+|++++|++|+.|
T Consensus 28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 28 SVKFSPNGEWLASSSADKLIKIWGAYDGKFE---------------------KTISGHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCCcccc---------------------hhhccCCCceEEEEEcCCCCEEEEECCC
Confidence 4568899999999999999999999887766 6788999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
+.|++||+.+++.+..+ .+|...|.+++|+| ++.+|++++.||.|++||+.+++.... +..|..+|.+++|+|++
T Consensus 87 ~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDG 161 (312)
T ss_dssp SEEEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTS
T ss_pred CEEEEEECCCCcEEEEE-cCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCC
Confidence 99999999999988777 78999999999999 999999999999999999998876654 78899999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
.+|++++.||.|++||+++++....+... +...+..++|+|+ +.+|++++.|+.|++||+++++.....
T Consensus 162 -~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 162 -SLIVSSSYDGLCRIWDTASGQCLKTLIDD---------DNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp -SEEEEEETTSCEEEEETTTCCEEEEECCS---------SCCCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred -CEEEEEeCCCcEEEEECCCCceeeEEecc---------CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 58899999999999999998876554321 3446899999998 789999999999999999887643221
Q ss_pred CCCCCccccCCCCcCCCcc---cceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQ---VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
..|. ..+......+++.+|++++ ++.|++||+.+
T Consensus 231 ---------------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--------------------------- 268 (312)
T 4ery_A 231 ---------------TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--------------------------- 268 (312)
T ss_dssp ---------------CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT---------------------------
T ss_pred ---------------EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC---------------------------
Confidence 1111 1222333346788898888 66899999987
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee--ccCeEEEEecC
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKK 373 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~--~dg~i~iwd~~ 373 (492)
...+..+.+|... |.+++| +|++++|++++ .|++|++|+..
T Consensus 269 -----------~~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 269 -----------KEIVQKLQGHTDV--VISTAC-HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -----------CCEEEEECCCSSC--EEEEEE-CSSSSEEEEEECTTTCCEEEEECC
T ss_pred -----------chhhhhhhccCCc--EEEEee-cCcCCceEEEEccCCccEEEecCC
Confidence 3456778888876 899998 99999999987 69999999863
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-41 Score=314.15 Aligned_cols=314 Identities=14% Similarity=0.143 Sum_probs=239.2
Q ss_pred eeeeeEeecCccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCC
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
.+.+...+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. .+|...|.+++|+|. ++.+|++++.|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d 140 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIR 140 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCC
Confidence 346678889999999999999999 999999999999999999888766653 369999999999982 35899999999
Q ss_pred CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
+.|++||+.............|...|.+++|+|++ .+|++++.|+.|++||++ ++.+..+.. +...|.
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~----------h~~~v~ 208 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKL----------HKAKVT 208 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEEC----------SSSCEE
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEecc----------CCCcEE
Confidence 99999999863332222223455889999999999 589999999999999994 555555543 556899
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC-CCCeeEeec-CCcEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIY 285 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~~~i~ 285 (492)
+++|+|++..+|++++.|+.|++||+++.+.... ..... .|...|.+++|+| ++++|++++ ++.|+
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS-----------YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC-----------EEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc-----------eEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 9999998444999999999999999998432111 01111 4678999999999 999999888 67899
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCc-eeeccccceeeeeEEeecCCCcEEEEeecc
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ-VYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d 364 (492)
+||+.++.....+..++...... ...+. .+... . .+..++| +|++++ +|+.|
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~p~-~--~~~~~~~-s~dg~~--s~s~d 329 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHPHRQFQH---------------------LTPIKATWHPM-Y--DLIVAGR-YPDDQL--LLNDK 329 (383)
T ss_dssp EEETTBTTSCSEEEECCBCCCTT---------------------SCCCCCEECSS-S--SEEEEEC-BCCTTT--CTTCC
T ss_pred EEECCCCcccccccccccccccc---------------------ccceEEeccCC-C--CceEEEe-cCCccc--ccCCC
Confidence 99998764432221111000000 00000 11111 1 1455666 888888 88899
Q ss_pred CeEEEEecCCCeeeEEEec--CCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 365 GRIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
|.|++||+.+++++..+.+ |.+.+..++|+|++++|++++ |+.|++|++++
T Consensus 330 ~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9999999999999999987 456788889999999999997 99999999975
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-41 Score=315.99 Aligned_cols=313 Identities=18% Similarity=0.242 Sum_probs=231.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|+|++||+|+ +++++||++.+|+.+.......... .+ ...+ .......+...|++++|+|++++|++|+.|
T Consensus 69 ~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~-~~~~-~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d 144 (393)
T 1erj_A 69 CVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KD-PENL-NTSSSPSSDLYIRSVCFSPDGKFLATGAED 144 (393)
T ss_dssp EEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc-cc-cccc-cccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence 467899999999987 7899999999888662210000000 00 0000 000111234469999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC-C
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-G 161 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~-~ 161 (492)
+.|+|||+.+++.+..+ .+|...|.+++|+| ++.+|++++.|+.|++||+.+++.... + .+...+.+++|+| +
T Consensus 145 ~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~--~-~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 145 RLIRIWDIENRKIVMIL-QGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLT--L-SIEDGVTTVAVSPGD 218 (393)
T ss_dssp SCEEEEETTTTEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE--E-ECSSCEEEEEECSTT
T ss_pred CeEEEEECCCCcEEEEE-ccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEE--E-EcCCCcEEEEEECCC
Confidence 99999999999887777 79999999999999 999999999999999999988766543 3 3567899999999 5
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
+ .+|++++.|+.|++||++++..+..+..... ....|...|.+++|+|+ +.+|++++.|+.|++||+++......
T Consensus 219 ~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~---~~~~h~~~v~~v~~~~~-g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 219 G-KYIAAGSLDRAVRVWDSETGFLVERLDSENE---SGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp C-CEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEEC--------
T ss_pred C-CEEEEEcCCCcEEEEECCCCcEEEeeccccc---CCCCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCCccc
Confidence 5 6899999999999999999887665532111 01115568999999998 78999999999999999987543211
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
... +.... ......+|...|.+++|+|++++|++++ ++.|++||+.++
T Consensus 294 ~~~--~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---------------------------- 342 (393)
T 1erj_A 294 SKT--PNSGT-CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------------------------- 342 (393)
T ss_dssp ---------C-EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC----------------------------
T ss_pred ccC--CCCCc-ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----------------------------
Confidence 100 00000 0112345778899999999999999998 668999998873
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecC------CCcEEEEeeccCeEEEEecCC
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP------KCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~------~g~~l~sg~~dg~i~iwd~~~ 374 (492)
..+..+.+|... |.+++| ++ ++++||+|+.||+|+||++..
T Consensus 343 ----------~~~~~l~~h~~~--v~~v~~-~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 343 ----------NPLLMLQGHRNS--VISVAV-ANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ----------CEEEEEECCSSC--EEEEEE-CSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ----------eEEEEECCCCCC--EEEEEe-cCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 456778899887 888887 54 789999999999999999854
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=312.94 Aligned_cols=295 Identities=14% Similarity=0.169 Sum_probs=239.3
Q ss_pred EeecCccceEEEEEEcCCCCE-EEEecC---CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCC---CceEEeecCC
Q 011160 55 AKLDKHRGCVNTVSFNTDGDI-LISGSD---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD---DRSIVTCAAD 127 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~-l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~d 127 (492)
..+.+|.+.|++++|+|++.. +++|+. |+.|+||++.+++.......+|...|.+++|+| + +.+|++++.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT--CCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC--CCCCCceEEEecCC
Confidence 456789999999999999864 556665 899999999988876555458999999999999 7 6999999999
Q ss_pred CcEEEEecccCC-eeeeEEeecCCCceEEEEE------cCCCCcEEEEEcCCCcEEEEeCCCCC-ccceeecCCCCCCCc
Q 011160 128 GQVRHAQILERG-GVETKLLGKHQGRAHKLAI------EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRN 199 (492)
Q Consensus 128 g~v~iw~~~~~~-~~~~~~~~~~~~~v~~i~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~ 199 (492)
|.|++|++.++. .... +.+|...|.++.| +|++ .+|++++.||.|++||++++. ....+..+...
T Consensus 90 g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---- 162 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYS--VKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE---- 162 (357)
T ss_dssp SCEEEECTTSCSSCSEE--ECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTS----
T ss_pred CeEEEEeCCCCCccEEE--EEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCC----
Confidence 999999998876 4443 7889999999955 6777 589999999999999999887 45554432211
Q ss_pred ceeecceEEEE----EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC---C
Q 011160 200 YMTVVNLNAIA----IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---Q 272 (492)
Q Consensus 200 ~~~~~~v~~~~----~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~ 272 (492)
....+.+++ |+|+ +.++++++.||.|++||+++++.. ....+...|.+++|+| +
T Consensus 163 --~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----------------~~~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 163 --NKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALR----------------WETNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp --CCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEE----------------EEEECSSCEEEEEESCSSSS
T ss_pred --CCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCcee----------------eecCCCCceEEEEcCCCCCC
Confidence 233678888 6777 789999999999999999887632 1223567899999999 8
Q ss_pred CCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCce-----eeccccceeee
Q 011160 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV-----YKGHRNCVTVK 346 (492)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~ 346 (492)
+.+|++++ ++.|++||+.++ ..... +.+|... |.
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~--------------------------------------~~~~~~~~~~~~~~~~~--v~ 263 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQ--------------------------------------HPTKGFASVSEKAHKST--VW 263 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEE--------------------------------------ETTTEEEEEEEECCSSC--EE
T ss_pred CCEEEEECCCCeEEEEeCcCC--------------------------------------CcccceeeeccCCCcCC--EE
Confidence 99988888 678999999873 22333 3377776 89
Q ss_pred eEEeecCCCc-EEEEeeccCeEEEEecCCC-------------------eeeEEEecCCceeEEEeecCCCCeEE-EeeC
Q 011160 347 GVNFFGPKCE-YVVSGSDCGRIFIWKKKGG-------------------ELIRVIEADRHVVNCIEPHPHSTVLA-SSGI 405 (492)
Q Consensus 347 ~~~~~s~~g~-~l~sg~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~ 405 (492)
+++| +|+++ +|++|+.||.|++||+.++ +++..+.+|.+.|++++|+|++++|+ +++.
T Consensus 264 ~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~ 342 (357)
T 3i2n_A 264 QVRH-LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF 342 (357)
T ss_dssp EEEE-ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred EEEE-CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence 9998 99998 8999999999999999754 46778899999999999999999998 8999
Q ss_pred CCCEEEeccCCCC
Q 011160 406 ESDIKILTPNAAD 418 (492)
Q Consensus 406 dg~i~iw~~~~~~ 418 (492)
||.|++|++.+.+
T Consensus 343 d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 343 DQTVRVLIVTKLN 355 (357)
T ss_dssp TSEEEEEEECC--
T ss_pred CCcEEEEECCCcc
Confidence 9999999998754
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-42 Score=322.33 Aligned_cols=302 Identities=13% Similarity=0.204 Sum_probs=245.4
Q ss_pred ccceEEEEEEcCCCC-EEEEe----------cCCCeEEEEECCCCce---eeeeccCcCcceEEEEecCCCCCceEEeec
Q 011160 60 HRGCVNTVSFNTDGD-ILISG----------SDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (492)
Q Consensus 60 h~~~v~~~~~s~~~~-~l~s~----------~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 125 (492)
+...|.+++|+|+++ +|++| +.|+.|+||++.++.. +.. ..|...|.+++|+| ++.+|++++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~--~~~~l~~~~ 86 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSH--NNKIIAGAL 86 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECS--SSSCEEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECC--CCCeEEEEc
Confidence 345688999999987 99999 8999999999998763 233 36889999999999 999999999
Q ss_pred CCCcEEEEecccC--CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC------ccceeecCCCCCC
Q 011160 126 ADGQVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA------ATELFTCRPIDDR 197 (492)
Q Consensus 126 ~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~ 197 (492)
.||.|++|++... .......+.+|...|++++|+|++..+|++++.||.|++||+++++ ....+...
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----- 161 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS----- 161 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS-----
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc-----
Confidence 9999999999872 1113344788999999999999844789999999999999999886 22221100
Q ss_pred CcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-Cee
Q 011160 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELL 276 (492)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l 276 (492)
. .+...|.+++|+|+++.+|++++.|+.|++||+++++....... .....+|...|.+++|+|++ .+|
T Consensus 162 ~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 162 M--SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY---------TSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp C--CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC---------CCCSSCCCCCEEEEEECSSCTTEE
T ss_pred c--CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec---------cccccccCCceEEEEECCCCCCEE
Confidence 1 15568999999998678999999999999999998764332211 11112336789999999997 578
Q ss_pred Eeec-CC---cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee-ccccceeeeeEEee
Q 011160 277 VSYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFF 351 (492)
Q Consensus 277 ~~~~-~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~ 351 (492)
++++ ++ .|++||+.+. ......+. +|... |.+++|
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~-------------------------------------~~~~~~~~~~~~~~--v~~~~~- 270 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNA-------------------------------------NTPLQTLNQGHQKG--ILSLDW- 270 (416)
T ss_dssp EEEECCSSSCCCCEEETTST-------------------------------------TSCSBCCCSCCSSC--EEEEEE-
T ss_pred EEEECCCCCceEEEEeCCCC-------------------------------------CCCcEEeecCccCc--eeEEEe-
Confidence 8777 55 8999999874 23445555 77766 899998
Q ss_pred cC-CCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCC-CeEEEeeCCCCEEEeccCCCCCCc
Q 011160 352 GP-KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 352 s~-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
+| ++++|++++.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++.|+.|++|++...+...
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99 99999999999999999999999999999999999999999999 899999999999999998876443
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-42 Score=326.05 Aligned_cols=337 Identities=15% Similarity=0.195 Sum_probs=252.3
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEee-cCccceEEEEEEcC-CCCEEEEecCC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNT-DGDILISGSDD 82 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~d 82 (492)
.|+|+++.+++++ .|+.. |+++ ..+ .+|.+.|++++|+| ++++|++|+.|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~---------------------~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d 85 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLI---------------------ATLMENEPNSITSSAVSPGETPYLITGSDQ 85 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEE---------------------EEECTTTTSCEEEEEEECSSSCEEEEEETT
T ss_pred hcCCccccccccc------ccccc-ceEE---------------------eeeccCCCCceEEEEECCCCCCEEEEecCC
Confidence 4677788877766 37744 5555 667 88999999999999 99999999999
Q ss_pred CeEEEEECCC---Cceee-eeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc---cCCeeee--------EEee
Q 011160 83 RRVILWDWKT---ERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL---ERGGVET--------KLLG 147 (492)
Q Consensus 83 ~~i~iwd~~~---~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~---~~~~~~~--------~~~~ 147 (492)
|+|+|||+.+ +.... ....+|...|.+++|+| ++.+|++++.||.|++||+. .+..... ..+.
T Consensus 86 g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~ 163 (437)
T 3gre_A 86 GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK 163 (437)
T ss_dssp SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred ceEEEeECcccccCcccceeeeccCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEcc
Confidence 9999999876 43211 12126899999999999 99999999999999999995 4433221 1111
Q ss_pred c--CCCceEEEE--EcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 148 K--HQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 148 ~--~~~~v~~i~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
. +...+.++. +++++ .+|++++.|+.|++||+++++.+..+.... +...|++++|+|+ +.+|++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------h~~~v~~~~~s~~-~~~l~s~~ 233 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSP--------RHGAVSSICIDEE-CCVLILGT 233 (437)
T ss_dssp GGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCG--------GGCCEEEEEECTT-SCEEEEEE
T ss_pred CcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCC--------CCCceEEEEECCC-CCEEEEEc
Confidence 2 456677776 55777 689999999999999999999887776421 3457999999998 78999999
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC----CCCeeEeec-CCcEEEEecCCCCCCCCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD----QSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 298 (492)
.||.|++||+++++.... +...|...|.+++|+| ++.+|++++ ++.|++||+.++.....+
T Consensus 234 ~dg~i~iwd~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRS--------------WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp TTSCEEEEETTTTEEEEE--------------EBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEcCCccEEEE--------------EecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 999999999998764322 1113567899996665 577999988 557999999876533332
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec--cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
..+.... ....+.+++..+ ....+.+ |... |.+++| + ++++|++|+.||.|++||+.+++
T Consensus 300 ~~~~~~~--~~~~~~~~~~~l------------~~~~~~~~~~~~~--v~~l~~-~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 300 INSDEQP--SMEHFLPIEKGL------------EELNFCGIRSLNA--LSTISV-S-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp ESSSSCC--CGGGGSCBCSSG------------GGCCCCCCCSGGG--GCCEEE-E-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred EcCCCCC--ccceeccccccc------------ccceecccccCCc--eEEEEE-C-CceEEEecCCCCeEEEEECCCcc
Confidence 2111111 111122222211 1112344 5554 899998 8 78999999999999999999998
Q ss_pred eeEEEec-------------------------------------CCceeEEEeecCC--CCeEEEeeCCCCEEEec
Q 011160 377 LIRVIEA-------------------------------------DRHVVNCIEPHPH--STVLASSGIESDIKILT 413 (492)
Q Consensus 377 ~~~~~~~-------------------------------------h~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~ 413 (492)
....+.+ |...|++++|+++ +.+|++++.||.|+||+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 362 SSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp GCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8877765 7889999999998 77999999999999996
No 53
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-41 Score=301.91 Aligned_cols=295 Identities=18% Similarity=0.214 Sum_probs=245.6
Q ss_pred eeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
.+++.+.+.+|.+.|++++| |++++|++|+.||.|++||+.++.....+ ..|...|.+++|+| ++.+|++++.||.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 82 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDS--EKELLLFGGKDTM 82 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEET--TTTEEEEEETTSC
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECC--CCCEEEEecCCCe
Confidence 34566889999999999999 99999999999999999999888876666 68999999999999 9999999999999
Q ss_pred EEEEecccCCe-eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 130 VRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 130 v~iw~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
|++|++..... .....+..|...|.+++|. + .++++++.||.|++|| .+.....+.. +...+.+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~----------~~~~v~~ 147 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQA----------HNASVWD 147 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEEC----------CSSCEEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEeccc----------CCCceeE
Confidence 99999876532 2223477899999999993 4 5789999999999999 4444444443 4557999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEe
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (492)
++|.|.++.++++++.||.|++||..... ......+...+.+++|+|++.+++++.++.|++||
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d 211 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDKVI----------------KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD 211 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTEEE----------------EEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCceE----------------EEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEE
Confidence 99988447899999999999999954322 11222367889999999999944444477999999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
+.++ ..+..+.+|... |.+++| +|++ .|++++.||.|+
T Consensus 212 ~~~~--------------------------------------~~~~~~~~~~~~--i~~~~~-~~~~-~l~~~~~dg~v~ 249 (313)
T 3odt_A 212 MHTG--------------------------------------DVLRTYEGHESF--VYCIKL-LPNG-DIVSCGEDRTVR 249 (313)
T ss_dssp TTTC--------------------------------------CEEEEEECCSSC--EEEEEE-CTTS-CEEEEETTSEEE
T ss_pred CCch--------------------------------------hhhhhhhcCCce--EEEEEE-ecCC-CEEEEecCCEEE
Confidence 9873 456677788876 899998 9999 588999999999
Q ss_pred EEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcc
Q 011160 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (492)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 422 (492)
+||+.+++++..+..|...|++++|+|+++ +++++.||.|++|++.+++....
T Consensus 250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 250 IWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred EEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 999999999999999999999999999998 66788999999999998766544
No 54
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=305.00 Aligned_cols=290 Identities=14% Similarity=0.196 Sum_probs=211.7
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEee-cC-ccceEEEEEEcCCCCEEEEecCC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DK-HRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.++++ +||+|+.||+|+|||+.++... ....+ .+ |.+.|++++|+|++++|++|+.|
T Consensus 21 ~~s~~--~las~~~D~~i~lw~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 21 DFSQG--ILATGSTDRKIKLVSVKYDDFT-------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp EEETT--EEEEEESSSCEEEEECSSSCCE-------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCC--EEEEEcCCCEEEEEEecCCCeE-------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 45555 9999999999999999865321 12344 34 99999999999999999999999
Q ss_pred CeEEEEECCC-------CceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC--eeeeEEeecCCCce
Q 011160 83 RRVILWDWKT-------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGRA 153 (492)
Q Consensus 83 ~~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v 153 (492)
++|+||++.. .+.+..+ .+|...|.+++|+| ++++|++|+.|+.|++||+.... ......+.+|...|
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEE-C----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred CcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 9999999853 2333444 78999999999999 99999999999999999995432 12334478899999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCC--CccceeecCCCCCCCcceeecceEEEEEcCCC-CceEEEecCCCeEEE
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRL 230 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~v~i 230 (492)
++++|+|++ .+|++++.|++|++||+.++ +++..+.. |...|.+++|+|++ +.+|++++.|++|++
T Consensus 157 ~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 157 KHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNG----------HEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225 (330)
T ss_dssp EEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECC----------CSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred EEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccC----------CCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence 999999998 58999999999999998876 33333332 55689999999973 357999999999999
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (492)
||++....... ....+...+...|...|.+++|++++ +|++++ ++.|++|+..++.
T Consensus 226 w~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~---------------- 282 (330)
T 2hes_X 226 WKYMGDDEDDQ------QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE---------------- 282 (330)
T ss_dssp EEEEEECTTSC------EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE----------------
T ss_pred EEecCCCcccc------ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc----------------
Confidence 99976531110 00001111223377899999999776 556655 7799999986531
Q ss_pred cccCCCCCCCCCCCCCCCccccCC-ceeeccccceeeeeEEeecC--CCcEEEEeeccCeEEEEecCC
Q 011160 310 SEMGSDHTSAASPSTANTDVRIAP-QVYKGHRNCVTVKGVNFFGP--KCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~s~--~g~~l~sg~~dg~i~iwd~~~ 374 (492)
.... ..+.+|... .|.+++| +| ++++||+|+.||+|+||++..
T Consensus 283 --------------------~~~~~~~~~~h~~~-~v~~v~~-~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 --------------------WKVFAKRALCHGVY-EINVVKW-LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp --------------------EEEEEEESCTTTTS-CEEEEEE-C-----CCEEEEETTSEEEEEEC--
T ss_pred --------------------eEEEeccccccccc-eEEEEEE-ecCCCceEEEEecCCCcEEEEEecc
Confidence 0111 223456541 2889998 88 789999999999999999864
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.7e-41 Score=313.26 Aligned_cols=309 Identities=13% Similarity=0.126 Sum_probs=246.1
Q ss_pred ecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
+..|.++|++++|+|++++|++++.|+.|++|++.+++ .+..+ .+|...|.+++|+| ++++|++++.||.|++|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEET--TTTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeC--CCCEEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999886 66666 68999999999999 999999999999999999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
+.+++......+..|...|.+++|+|++ .+|++++.|+.|++||++.+.......... .. +...|.+++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~--~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIK----KP--IRSTVLSLDWHPN 153 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEEC----TT--CCSCEEEEEECTT
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeee----cc--cCCCeeEEEEcCC
Confidence 9887766555567899999999999999 589999999999999999887422221110 01 4567999999998
Q ss_pred CCceEEEecCCCeEEEEecccccccCCCCC---CCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecC
Q 011160 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDF---GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (492)
+.+|++++.||.|++||++.......... +..............|...|.+++|+|++++|++++ ++.|++||+.
T Consensus 154 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 154 -SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp -SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred -CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 78999999999999999864332111000 000000111223335778999999999999999988 6689999998
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
++ ..+..+..|... +.+++| +|++++|++| .|+.|++|
T Consensus 233 ~~--------------------------------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~-~d~~i~i~ 270 (372)
T 1k8k_C 233 KK--------------------------------------MAVATLASETLP--LLAVTF-ITESSLVAAG-HDCFPVLF 270 (372)
T ss_dssp GT--------------------------------------TEEEEEECSSCC--EEEEEE-EETTEEEEEE-TTSSCEEE
T ss_pred CC--------------------------------------ceeEEEccCCCC--eEEEEE-ecCCCEEEEE-eCCeEEEE
Confidence 73 455677777765 899998 9999999988 89999999
Q ss_pred ecCC--Cee--e------------------------------------EEE-ecCCceeEEEeec-CCC---CeEEEeeC
Q 011160 371 KKKG--GEL--I------------------------------------RVI-EADRHVVNCIEPH-PHS---TVLASSGI 405 (492)
Q Consensus 371 d~~~--~~~--~------------------------------------~~~-~~h~~~v~~~~~s-~~~---~~l~s~~~ 405 (492)
++.+ ++. + ..+ .+|.+.|++++|+ +++ ++|+|++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~ 350 (372)
T 1k8k_C 271 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 350 (372)
T ss_dssp EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred EccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecC
Confidence 9987 421 0 223 4899999999976 666 99999999
Q ss_pred CCCEEEeccCCCC
Q 011160 406 ESDIKILTPNAAD 418 (492)
Q Consensus 406 dg~i~iw~~~~~~ 418 (492)
||.|++|++.+++
T Consensus 351 Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 351 DGGMSIWDVRSLE 363 (372)
T ss_dssp TSEEEEEEHHHHH
T ss_pred CCceEEEEecChh
Confidence 9999999997754
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.5e-41 Score=319.18 Aligned_cols=310 Identities=20% Similarity=0.233 Sum_probs=252.7
Q ss_pred CCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEE
Q 011160 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 7 ~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (492)
..++++|++|+.||+|++||+.+++.+ ..+.+|.+.|++++|+|++ +|++|+.||+|+
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~---------------------~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFL---------------------LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEE---------------------EEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEE---------------------EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 346789999999999999999988766 7788999999999999988 999999999999
Q ss_pred EEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeee---------------------eEE
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE---------------------TKL 145 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~---------------------~~~ 145 (492)
+||+.+++.+..+ .+|...|.+++|++..++.+|++++.||.|++||+.+..... ...
T Consensus 187 vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 187 VWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 9999999988777 789999999999953378999999999999999998765321 334
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC
Q 011160 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 146 ~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
+.+|...|.++. +++ .++++++.||.|++||+++++.+..+.. +...|.+++|+|+ +.++++|+.|
T Consensus 266 ~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~sg~~d 331 (464)
T 3v7d_B 266 LRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSG----------HTDRIYSTIYDHE-RKRCISASMD 331 (464)
T ss_dssp ECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEETT-TTEEEEEETT
T ss_pred ccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecC----------CCCCEEEEEEcCC-CCEEEEEeCC
Confidence 677888888874 556 5899999999999999999888776653 4557999999998 7899999999
Q ss_pred CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCC
Q 011160 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVS 304 (492)
Q Consensus 226 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 304 (492)
|.|++||+++++... ....|...|.+++|+ +.+|++++ ++.|++||+.+..
T Consensus 332 g~i~vwd~~~~~~~~---------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~----------- 383 (464)
T 3v7d_B 332 TTIRIWDLENGELMY---------------TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS----------- 383 (464)
T ss_dssp SCEEEEETTTTEEEE---------------EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-----------
T ss_pred CcEEEEECCCCcEEE---------------EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc-----------
Confidence 999999998876432 234578899999997 46788877 6789999997631
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEE-Eec
Q 011160 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEA 383 (492)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~-~~~ 383 (492)
....+ .+... +..++| +|++++|++|+ ||.|++||+.+++++.. +..
T Consensus 384 ---------------------------~~~~~-~~~~~--~~~~~~-~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 384 ---------------------------RKFSY-HHTNL--SAITTF-YVSDNILVSGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp ---------------------------EEEEE-ECTTC--CCEEEE-EECSSEEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred ---------------------------eeeee-cCCCC--ccEEEE-EeCCCEEEEec-CCeEEEEECCCCcEEehhhcc
Confidence 11111 12222 556676 99999999998 89999999999999876 677
Q ss_pred CCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
|...|.+++|+ ...++++++.||.+.+|-+
T Consensus 432 ~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 432 DADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 88999999997 3455666667776666543
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-41 Score=316.12 Aligned_cols=296 Identities=14% Similarity=0.148 Sum_probs=240.5
Q ss_pred cCccceEEEEEEcCCCC-EEEEecCCCeEEEEEC----CCCc------eeeeecc---------CcCcceEEEEecCCCC
Q 011160 58 DKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDW----KTER------VKLSFHS---------GHNDNVFQAKIMPFTD 117 (492)
Q Consensus 58 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~----~~~~------~~~~~~~---------~~~~~v~~~~~~~~~~ 117 (492)
..|.+.|++++|+|+++ +||+|+.||.|++|++ .+++ ....+.. +|...|++++|+| +
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH--D 119 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT--T
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC--C
Confidence 34669999999999999 9999999999999999 8877 3333311 1677999999999 9
Q ss_pred CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC
Q 011160 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (492)
Q Consensus 118 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (492)
+++|++++.||.|++|+ .++..... +..|...|.+++|+|++ .+|++++.|+.|++||+++++....+........
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTGALLNV--LNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTSCEEEE--ECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred CCEEEEEeCCCeEEEEe-CCCCeeee--ccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999999 44444443 77899999999999999 5889999999999999999987776654321100
Q ss_pred -----CcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC
Q 011160 198 -----RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (492)
Q Consensus 198 -----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 272 (492)
........+.+++|+|+ ..+++++.+|.|++||+++++.. .....|...|.+++|+|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPT---------------GKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp ----------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCS---------------EEECCCSSCEEEEEEETT
T ss_pred ceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCcee---------------eeeccCCCceEEEEECCC
Confidence 00001112888999986 46889999999999999886522 223456789999999999
Q ss_pred CCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee
Q 011160 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (492)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (492)
+++|++++ ++.|++|++.+ ......+.+|... |.+++|
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~--------------------------------------~~~~~~~~~~~~~--i~~~~~- 297 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGN--------------------------------------GNSQNCFYGHSQS--IVSASW- 297 (425)
T ss_dssp TTEEEEEETTSCEEEECSSS--------------------------------------BSCSEEECCCSSC--EEEEEE-
T ss_pred CCEEEEEcCCCEEEEEECCC--------------------------------------CccceEecCCCcc--EEEEEE-
Confidence 99999988 67899999887 3455667777776 899998
Q ss_pred cCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|++.+++
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999 99999999999999999999999999999999999999999999999999999999998765
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1e-40 Score=304.10 Aligned_cols=295 Identities=19% Similarity=0.246 Sum_probs=236.2
Q ss_pred CCCCCCC-CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 3 DASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 3 ~~~~~~~-~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
.+.|+|+ +++||||+.||+|+|||+.+++.. ...+.+.+.+|...|.+++|+|++++|++++.
T Consensus 43 ~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 43 QIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 3567776 689999999999999999866543 12344678999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
|+.|++|+.......... ..+...+..+.+++ ++.+|++++.|+.+++|++...... .....+|...+..++|+++
T Consensus 107 d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEE-EECSSSCSSCEEEEEECSC
T ss_pred cccceEEeecccceeeee-cCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceE-EEEeccccCcccceEEccC
Confidence 999999999988876666 67888899999999 9999999999999999998765433 3346789999999999987
Q ss_pred CC-cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 162 SP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 162 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
+. .++++++.|+.|++||+++++....+.. +...|++++|+|+ +.+|++|+.||.|++||+++.+...
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~----------h~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIG----------HTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHLY 251 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecC----------CCCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCceee
Confidence 53 4678899999999999999988776653 5568999999998 7899999999999999999876432
Q ss_pred CCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
. . .+...+.++.|+|++.+++++.++.|++||+.+......+.
T Consensus 252 ~---------------~-~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--------------------- 294 (340)
T 4aow_A 252 T---------------L-DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK--------------------- 294 (340)
T ss_dssp E---------------E-ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEC---------------------
T ss_pred e---------------e-cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecc---------------------
Confidence 2 1 12457999999999998888889999999988642211100
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
.........+|... |++++| +|+|++|++|+.||.|+|||+.+|+
T Consensus 295 --------~~~~~~~~~~h~~~--v~~l~~-s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 295 --------QEVISTSSKAEPPQ--CTSLAW-SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp --------CC-------CCCCC--EEEEEE-CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred --------ccceeeeccCCCCC--EEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 01122334456665 899998 9999999999999999999999885
No 59
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.8e-40 Score=308.59 Aligned_cols=282 Identities=16% Similarity=0.256 Sum_probs=229.2
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCe
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (492)
.++++ ++||+|. |++|+|||..+|++.. ...+.+|...|++|+|+|+|++||+|+.||.
T Consensus 112 ~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-------------------~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 112 DWSSG-NVLAVAL-DNSVYLWSASSGDILQ-------------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp EECTT-SEEEEEE-TTEEEEEETTTCCEEE-------------------EEECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred EECCC-CEEEEEe-CCEEEEEECCCCCEEE-------------------EEEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence 34544 5777776 9999999999998762 1345678899999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCc
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
|+|||+.+++.+..+ .+|...+.++++ ++..|++|+.|+.+++|+........ ..+.+|...+..+.++|++ .
T Consensus 171 v~iWd~~~~~~~~~~-~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~-~~~~~h~~~~~~~~~~~~g-~ 243 (420)
T 4gga_A 171 VQLWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG-R 243 (420)
T ss_dssp EEEEETTTTEEEEEE-CCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-S
T ss_pred EEEEEcCCCcEEEEE-eCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceee-EEecccccceeeeeecCCC-C
Confidence 999999999988887 799999999887 56799999999999999987755433 3478899999999999999 5
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE--ecCCCeEEEEecccccccCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV--AGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~ 242 (492)
++++++.|+.+++|+..+++........ ...+...|.+++|+|.+..++++ |+.|+.|++||+.+++..
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~------~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~--- 314 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQT------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--- 314 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEE------ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE---
T ss_pred eeeeeeccccceEEeeccccccceeeee------ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc---
Confidence 8999999999999999887643221100 01155678999999987777765 457899999998765411
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (492)
T Consensus 315 -------------------------------------------------------------------------------- 314 (420)
T 4gga_A 315 -------------------------------------------------------------------------------- 314 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee--ccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeE
Q 011160 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL 400 (492)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 400 (492)
..+..+.. +.++.| +|+++.+++++ .|+.|+|||+.+++++..+.+|.+.|++++|+|+|++|
T Consensus 315 -----------~~~~~~~~---v~~~~~-~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l 379 (420)
T 4gga_A 315 -----------SAVDAHSQ---VCSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 379 (420)
T ss_dssp -----------EEEECSSC---EEEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred -----------eeeccccc---eeeeee-cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 11111221 677777 89988887654 78999999999999999999999999999999999999
Q ss_pred EEeeCCCCEEEeccCCCC
Q 011160 401 ASSGIESDIKILTPNAAD 418 (492)
Q Consensus 401 ~s~~~dg~i~iw~~~~~~ 418 (492)
+||+.|++|+||++....
T Consensus 380 ~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 380 ASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEETTTEEEEECCSCSS
T ss_pred EEEecCCeEEEEECCCCC
Confidence 999999999999997653
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.3e-41 Score=309.85 Aligned_cols=319 Identities=10% Similarity=0.122 Sum_probs=244.4
Q ss_pred eecCccceEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceeeeec----cCcCcceEEEEecCCCC----CceEEe
Q 011160 56 KLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTD----DRSIVT 123 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~----~~~l~~ 123 (492)
...+|.++|++++|+|+ ...+++++.++.|++|++.+++.+..+. ..|...|++++|+| + +.+|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEEE
Confidence 34589999999999984 4556666667799999999887655552 12667899999999 7 679999
Q ss_pred ecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC-CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCccee
Q 011160 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (492)
|+.||.|++||+.+++.+.. +.+|...|++++|+| ++ .+|++++.||.|++||+++++....+..... +
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~ 160 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-------H 160 (366)
T ss_dssp EETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEECSTTS-------C
T ss_pred ecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEeccccc-------c
Confidence 99999999999998877655 778999999999999 66 6899999999999999999887766532111 5
Q ss_pred ecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCC-------------CCCccccCCCCcCCCcccceEEEEE
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF-------------GQPADYFCPPNLIGDEQVGITGLAF 269 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (492)
...|.+++|+|+ +.+|++++.||.|++||+++++....... ...............|...|.+++|
T Consensus 161 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 161 RDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred cCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 668999999998 78999999999999999997754321100 0000000111122347889999999
Q ss_pred cCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeE
Q 011160 270 SDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348 (492)
Q Consensus 270 s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 348 (492)
+ +++|++++ ++.|++||+.+........ .........+..+.+|... |.++
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~--v~~~ 291 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKI------------------------KPSESNVTILGRFDYSQCD--IWYM 291 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGC------------------------CTTCCCEEEEEEEECSSCC--SSCC
T ss_pred c--CCEEEEEecCCEEEEEeCCCcccccccc------------------------ccCCcchheeccccccCCc--EEEE
Confidence 8 66888887 6789999998754321100 0000012345667777776 8889
Q ss_pred EeecCC--CcEEEEeeccCeEEEEecCCCee----eEEEecC--CceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 349 NFFGPK--CEYVVSGSDCGRIFIWKKKGGEL----IRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 349 ~~~s~~--g~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+| +|+ +++|++|+.||.|++||+.++++ ...+.+| ...|++++|+|++++|++++.||.|++|++.+
T Consensus 292 ~~-s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 292 RF-SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CC-EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EE-cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 98 999 99999999999999999998764 4478887 68999999999999999999999999999853
No 61
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.6e-41 Score=303.62 Aligned_cols=244 Identities=16% Similarity=0.154 Sum_probs=202.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
++.|+|+ .+|++|+.||+|+|||+.+++... .....+.+|.+.|++++|+|+|++|++|+.|
T Consensus 87 ~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~-----------------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d 148 (344)
T 4gqb_B 87 DLTWVGE-RGILVASDSGAVELWELDENETLI-----------------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD 148 (344)
T ss_dssp EEEEETT-TEEEEEETTSEEEEEEECTTSSCE-----------------EEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEeCC-CeEEEEECCCEEEEEeccCCCcee-----------------EeeccccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 3567777 467899999999999999887652 1223456899999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCC-ceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
++|++||+.+++.+..+ .+|...|++++|+| ++ .+|++++.|+.|++||+++++.........|...+++++|+|+
T Consensus 149 ~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 149 ICIKVWDLAQQVVLSSY-RAHAAQVTCVAASP--HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp SCEEEEETTTTEEEEEE-CCCSSCEEEEEECS--SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred CeEEEEECCCCcEEEEE-cCcCCceEEEEecC--CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence 99999999999998887 79999999999999 76 4688999999999999999887765444566778999999998
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
+.++|++|+.||.|++||+++++.+..+.. |...|++++|+|++..+|++|+.|++|++||+++++..
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~----------h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-- 293 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAV----------HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-- 293 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEEC----------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE--
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcC----------CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE--
Confidence 778899999999999999999998877764 55689999999986678999999999999999887632
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec-CCcEEEEecCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~~ 293 (492)
...+|...|++++|+|+++ +|++++ |++|++|++.+..
T Consensus 294 --------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 294 --------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp --------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred --------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 2345788999999999986 566777 7799999998753
No 62
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-42 Score=315.53 Aligned_cols=250 Identities=11% Similarity=0.112 Sum_probs=192.9
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccC--cchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEe
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELG--QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 79 (492)
-.+.|+|++++|++|+.||.|+|||+.++ +.+ ..+.+|.+.|++++|+|++++|+++
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s~ 73 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA---------------------RTFSDHDKIVTCVDWAPKSNRIVTC 73 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC---------------------CCBCCCSSCEEEEEECTTTCCEEEE
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCceEEE---------------------EEEecCCceEEEEEEeCCCCEEEEE
Confidence 46789999999999999999999999977 444 6788999999999999999999999
Q ss_pred cCCCeEEEEECCCCc---eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee-eeEEeec-CCCceE
Q 011160 80 SDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGK-HQGRAH 154 (492)
Q Consensus 80 ~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~-~~~~v~ 154 (492)
+.|+.|++||+.++. ....+ .+|...|.+++|+| ++++|++++.|+.|++|++..+... ....+.. |...|+
T Consensus 74 s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp ETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred eCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 999999999999877 44444 68999999999999 9999999999999999999887631 1223556 999999
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeec----------CCCCCCCcceeecceEEEEEcCCCCceEEEecC
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC----------RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (492)
+++|+|++ .+|++++.|+.|++||++.......... ...... .+...|.+++|+|+ +.+|++++.
T Consensus 151 ~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~-~~~l~~~~~ 225 (377)
T 3dwl_C 151 SLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPS-GNALAYAGH 225 (377)
T ss_dssp EEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTT-SSCEEEEET
T ss_pred EEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCC-CCEEEEEeC
Confidence 99999998 5899999999999999964432111000 000000 15668999999998 789999999
Q ss_pred CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCC
Q 011160 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 225 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
||.|++||+++++.... .......|...|.+++|+|++++|++++++.+.+|+...
T Consensus 226 d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 226 DSSVTIAYPSAPEQPPR-----------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp TTEEC-CEECSTTSCEE-----------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred CCcEEEEECCCCCCcce-----------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence 99999999998753100 022344577889999999999999999988888888764
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2e-40 Score=337.70 Aligned_cols=320 Identities=14% Similarity=0.169 Sum_probs=261.1
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++|+.||.|+|||+.+++.+ ..+.+|.++|++++|+|++++|++|+.|
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~---------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d 76 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVEV---------------------RSIQVTETPVRAGKFIARKNWIIVGSDD 76 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceE---------------------EEEecCCCcEEEEEEeCCCCEEEEEeCC
Confidence 4678999999999999999999999988776 6788999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC-C
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-G 161 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~-~ 161 (492)
|.|++|++.+++.+..+ .+|...|.+++|+| ++.+|++++.||.|++|++.++.... ..+.+|...|.+++|+| +
T Consensus 77 g~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp SEEEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEE-EEEECCSSCEEEEEEETTE
T ss_pred CeEEEEECCCCcEEEEE-ecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEE-EEEcCCCCcEEEEEEEcCC
Confidence 99999999999988877 78999999999999 99999999999999999998763332 34778999999999999 5
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC--CCCceEEEecCCCeEEEEeccccccc
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
+ ..|++++.||.|++||++++.....+... +...+.+++|+| + +.++++++.||.|++||+++++..
T Consensus 153 ~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 153 P-STFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp E-EEEEEEETTSEEEEEETTCSSCSEEEECC---------CTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEE
T ss_pred C-CEEEEEeCCCeEEEEECCCCcceeEEecC---------CCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEE
Confidence 6 68999999999999999988776665432 235789999999 6 689999999999999999876532
Q ss_pred CCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
. ....|...|.+++|+|++.+|++++ ++.|++||+.++
T Consensus 222 ~---------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-------------------------- 260 (814)
T 3mkq_A 222 A---------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-------------------------- 260 (814)
T ss_dssp E---------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--------------------------
T ss_pred E---------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------
Confidence 2 2334678899999999999999988 678999999873
Q ss_pred CCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc--EEEEeeccCeEEEEecCCCeeeE-----------------
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGSDCGRIFIWKKKGGELIR----------------- 379 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~--~l~sg~~dg~i~iwd~~~~~~~~----------------- 379 (492)
.....+..|... +.+++| +|+|. ++++++ ++.+.+|++..+....
T Consensus 261 ------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (814)
T 3mkq_A 261 ------------KVEKTLNVGLER--SWCIAT-HPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAA 324 (814)
T ss_dssp ------------SEEEEECCSSSS--EEEEEE-CTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSC
T ss_pred ------------cEEEEeecCCCc--EEEEEE-ccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECccccc
Confidence 344555666554 788888 88887 455554 6667788765432111
Q ss_pred --------------------------EEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 380 --------------------------VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 380 --------------------------~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
.+..+...+.+++|+|+|++|++++ ++.+.+|++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 325 ASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp TTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred ceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 1223444578888888888888887 78888888653
No 64
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.9e-40 Score=327.05 Aligned_cols=302 Identities=17% Similarity=0.200 Sum_probs=231.4
Q ss_pred CCCCCC-CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 4 ~~~~~~-~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
+.++++ +++|+||+.||+|+||++.++... .-...+.+.+|...|++++|+|++++|++|+.|
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 446655 578999999999999999864322 012336788999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee-EEeecCCCceEEEEEcCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~v~~i~~~~~ 161 (492)
|+|+|||+.++.....+ .+|...|.+++|+| ++++|++++.|++|++||+........ ....+|...|.+++|+|+
T Consensus 452 g~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRF-VGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp SEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CcEEEEECCCCcceeEE-eCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 99999999999888777 79999999999999 999999999999999999865432221 112468889999999998
Q ss_pred CC-cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 162 SP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 162 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
+. ..|++++.|+.|++||+++++....+.. |...|++++|+|+ +.+|++++.||.|++||+++++...
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------HTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEE
Confidence 62 4789999999999999999887766643 5568999999998 7899999999999999999876432
Q ss_pred CCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
.. .+...|.+++|+|++.+|++++++.|++||+.++.....+..........
T Consensus 598 ~~----------------~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~------------ 649 (694)
T 3dm0_A 598 SL----------------EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK------------ 649 (694)
T ss_dssp CC----------------BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-----------------
T ss_pred Ee----------------cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccc------------
Confidence 21 12457999999999999999999999999998753322111000000000
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
.........+.....+++++| +|+|++|++|+.||.|+||++.
T Consensus 650 ---------~~~~~~~~~~~~~~~~~~l~~-spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 ---------ADNSGPAATKRKVIYCTSLNW-SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --------------------CCCCEEEEEE-CTTSSEEEEEETTSEEEEEEC-
T ss_pred ---------ccccccccCCceeEEeeeEEE-cCCCCEEEEEcCCCeEEEEecc
Confidence 000000000111123678998 9999999999999999999984
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.2e-40 Score=291.56 Aligned_cols=270 Identities=16% Similarity=0.248 Sum_probs=202.9
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 132 (492)
..+.+|.+.|++++|+|+|++||+|+.|++|+||++..+ +.+..+ .+|...|++++|+|..++++|++|+.||+|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 457899999999999999999999999999999999753 445555 79999999999986223789999999999999
Q ss_pred EecccCCeeeeEEeecCCCceEEEEEcCC--CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 133 AQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
||+.++.......+..|...|.+++|+|+ + .+|++++.|+.|++||++++........ .+ |...|.+++
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~------~~--h~~~v~~~~ 152 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIII------DA--HAIGVNSAS 152 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEE------EC--CSSCEEEEE
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeee------ec--ccCccceEe
Confidence 99987754344447789999999999997 5 5899999999999999987643211111 01 555799999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (492)
|+|+.. .- .+ .. ...+++++|++++ |+.|++||+
T Consensus 153 ~~p~~~-~~-----~~--------~~-------------------------------~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 153 WAPATI-EE-----DG--------EH-------------------------------NGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp ECCCC---------------------------------------------------------CCEEEEEETTSCEEEEEE
T ss_pred ecCCcc-cc-----cc--------cC-------------------------------CCCCCcceEEEEcCCCcEEEEEE
Confidence 999621 00 00 00 0012345555555 446666666
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC---cEEEEeeccCe
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGR 366 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g---~~l~sg~~dg~ 366 (492)
.++... ......+.+|... |.+++| +|++ ++||+|+.|++
T Consensus 188 ~~~~~~----------------------------------~~~~~~l~~H~~~--V~~v~~-sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 188 NSDAQT----------------------------------YVLESTLEGHSDW--VRDVAW-SPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp ETTTTE----------------------------------EEEEEEECCCSSC--EEEEEE-CCCCSSSEEEEEEETTSC
T ss_pred cCCCce----------------------------------EEEEEEecCCCCc--eEEEEE-CCCCCCceEEEEEECCCc
Confidence 542100 1133467788876 899998 9984 89999999999
Q ss_pred EEEEecCCCe--e-eEEE--ecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 367 IFIWKKKGGE--L-IRVI--EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 367 i~iwd~~~~~--~-~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
|+|||+.+.. . ...+ ..|...|.+++|+|++++||+++.|++|++|+...
T Consensus 231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999997643 1 2233 46788899999999999999999999999999863
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-40 Score=304.68 Aligned_cols=289 Identities=10% Similarity=0.072 Sum_probs=219.3
Q ss_pred cceEEEEEEcCCCCEEEEecCC-------CeEEEEECCCCcee--------e-eeccCcCcceEEEEecCCCCCceEEe-
Q 011160 61 RGCVNTVSFNTDGDILISGSDD-------RRVILWDWKTERVK--------L-SFHSGHNDNVFQAKIMPFTDDRSIVT- 123 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~--------~-~~~~~~~~~v~~~~~~~~~~~~~l~~- 123 (492)
.-||++++|+||+++|++||.+ +.|++|++..+... . ..+.+|...|.++++.+ ..+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~----~~~~~g 89 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK----GIILVG 89 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET----TEEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC----CEEEEE
Confidence 3589999999999999998754 35999998765421 1 11357888888887753 44444
Q ss_pred ----------ecCCCcEEEEecccCCeeeeE-------EeecCCCceEEEEEcCCCCcEEE--EEcCCCcEEEEeCCCCC
Q 011160 124 ----------CAADGQVRHAQILERGGVETK-------LLGKHQGRAHKLAIEPGSPHVFY--TCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 124 ----------~~~dg~v~iw~~~~~~~~~~~-------~~~~~~~~v~~i~~~~~~~~~l~--~~~~dg~i~iwd~~~~~ 184 (492)
++.|+.+++|++......... ....+...+.+++|+|||. +++ +++.|++|++||+++++
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCc
Confidence 456788999998765432211 0123445688999999995 544 45578999999999998
Q ss_pred ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccce
Q 011160 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (492)
.+..+. +...|.+++|+|+ ++++++++.+ .+++|+..+++... ......|...|
T Consensus 169 ~~~~~~-----------~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~v 222 (365)
T 4h5i_A 169 EKFEIE-----------TRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIA-------------RKTDFDKNWSL 222 (365)
T ss_dssp EEEEEE-----------CSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEE-------------EECCCCTTEEE
T ss_pred EEEEeC-----------CCCceEEEEEccC-CceEEeccce-eEEEEEeccCccee-------------eeecCCCCCCE
Confidence 877765 4457999999998 7899988855 56666666554221 12233467889
Q ss_pred EEEEEcCCCCeeEeec-CC----cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc
Q 011160 265 TGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (492)
Q Consensus 265 ~~~~~s~~~~~l~~~~-~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (492)
.+++|+|+++++++++ ++ .+++|++...... ......+.+|
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~~~~ 268 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS----------------------------------VLRSKQVTNR 268 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE----------------------------------EEEEEEEESS
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceec----------------------------------ceeeeeecCC
Confidence 9999999999999887 44 4778887653100 1123456677
Q ss_pred ccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE-ecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 340 ~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
... |++++| +|+|++||+|+.|++|+|||+.+++++..+ .+|...|++++|+|||++|||+|.|++|+||++...
T Consensus 269 ~~~--V~~~~~-Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 269 FKG--ITSMDV-DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CSC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCC--eEeEEE-CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 776 899999 999999999999999999999999999875 789999999999999999999999999999999653
No 67
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.2e-40 Score=303.31 Aligned_cols=318 Identities=14% Similarity=0.147 Sum_probs=237.6
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
-.+.|+|++++|++|+.||.|++||+.+++.. ....+.+|...|++++|+|++++|++++.
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-------------------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 72 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-------------------QVHELKEHNGQVTGVDWAPDSNRIVTCGT 72 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEE-------------------EEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-------------------eeeeecCCCCcccEEEEeCCCCEEEEEcC
Confidence 35678999999999999999999999977521 23678899999999999999999999999
Q ss_pred CCeEEEEECCCCceeeee-ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee--eeEEeecCCCceEEEEE
Q 011160 82 DRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~i~~ 158 (492)
||.|++||+.+++....+ ...|...|.+++|+| ++++|++++.||.|++|++...... .......|...|.+++|
T Consensus 73 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 73 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CCeEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 999999999888754433 257899999999999 9999999999999999999887642 22234678899999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCC------------------CCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 159 EPGSPHVFYTCGEDGLVQHFDLR------------------TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
+|++ .+|++++.||.|++||++ .++....+.. +...+.+++|+|+ +.+|+
T Consensus 151 ~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~ 218 (372)
T 1k8k_C 151 HPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS----------SCGWVHGVCFSAN-GSRVA 218 (372)
T ss_dssp CTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----------CSSCEEEEEECSS-SSEEE
T ss_pred cCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC----------CCCeEEEEEECCC-CCEEE
Confidence 9998 589999999999999965 3333333321 5567999999998 68999
Q ss_pred EecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCC--CC--CCC
Q 011160 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM--GL--GPN 296 (492)
Q Consensus 221 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~--~~--~~~ 296 (492)
+++.|+.|++||+++++... ....|...|.+++|+|++++|+++.++.|++|++.. +. ...
T Consensus 219 ~~~~d~~i~i~d~~~~~~~~---------------~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAVA---------------TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp EEETTTEEEEEEGGGTTEEE---------------EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred EEeCCCEEEEEECCCCceeE---------------EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEee
Confidence 99999999999998876432 223456789999999999999999888999999987 31 111
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCccccC------CceeeccccceeeeeEEeecCCC---cEEEEeeccCeE
Q 011160 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA------PQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGRI 367 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~s~~g---~~l~sg~~dg~i 367 (492)
.+........... ..+......+...... .....+|... |++++|++++| ++|++|+.||.|
T Consensus 284 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 284 RLDVPKQSSQRGL-------TARERFQNLDKKASSEGSAAAGAGLDSLHKNS--VSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp CCCCC---------------CHHHHHHHCCCCC---------CCCSSSSSSC--EEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred ccCccccchhhhc-------chhhhhhhcccccccccCccccccccccccCC--cceeEEecCCCcceeeEEEecCCCce
Confidence 1110000000000 0000000000000000 2222478776 99999757888 999999999999
Q ss_pred EEEecCCCe
Q 011160 368 FIWKKKGGE 376 (492)
Q Consensus 368 ~iwd~~~~~ 376 (492)
++|++.+++
T Consensus 355 ~~W~~~~~~ 363 (372)
T 1k8k_C 355 SIWDVRSLE 363 (372)
T ss_dssp EEEEHHHHH
T ss_pred EEEEecChh
Confidence 999987654
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=289.18 Aligned_cols=282 Identities=15% Similarity=0.226 Sum_probs=224.6
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.+++++ +||+|. |++|+|||+++|+++.. ..+.+|...|++++|+|++++|++|+.||
T Consensus 31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~-------------------~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQL-------------------LQMEQPGEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp EEECTTS-EEEEEE-TTEEEEEETTTCCEEEE-------------------EECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCCC-EEEEEe-CCEEEEEECCCCCEEEE-------------------EEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence 4467765 777765 99999999999987721 34567889999999999999999999999
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
+|++|++.+++.+..+ .+|...+.++.+ ++..+++++.++.+++|+........ ..+.+|...+..+.+.+++
T Consensus 90 ~v~iw~~~~~~~~~~~-~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 162 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG- 162 (318)
T ss_dssp EEEEEETTTTEEEEEE-ECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-
T ss_pred cEEEeecCCceeEEEe-cCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeE-EEEcCccCceEEEEEcCCC-
Confidence 9999999999988877 789988887666 56789999999999999987765433 3478899999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE--EEecCCCeEEEEecccccccCC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF--AVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l--~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
.+|++++.|+.|++||+++++......... ..+...+.+++++|.+...+ ++++.++.|++||.+.....
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-- 234 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTF------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-- 234 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEE------CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--
T ss_pred CEEEEEecCcceeEEECCCCcccccceeee------cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--
Confidence 588999999999999999876543221110 01445688889988755554 35667888888887653210
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
T Consensus 235 -------------------------------------------------------------------------------- 234 (318)
T 4ggc_A 235 -------------------------------------------------------------------------------- 234 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe--eccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCe
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG--SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 399 (492)
....+... +..+.| +|++..++++ +.|+.|+|||+.+++++..+.+|.+.|++++|+|++++
T Consensus 235 -------------~~~~~~~~--v~~~~~-~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~ 298 (318)
T 4ggc_A 235 -------------SAVDAHSQ--VCSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298 (318)
T ss_dssp -------------EEEECSSC--EEEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred -------------ccccceee--eeeeee-cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 00111111 667777 8888877664 47999999999999999999999999999999999999
Q ss_pred EEEeeCCCCEEEeccCCC
Q 011160 400 LASSGIESDIKILTPNAA 417 (492)
Q Consensus 400 l~s~~~dg~i~iw~~~~~ 417 (492)
|||++.||+|+|||+...
T Consensus 299 l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 299 VASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEETTTEEEEECCSCC
T ss_pred EEEEecCCeEEEEECCCC
Confidence 999999999999999654
No 69
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.3e-39 Score=305.59 Aligned_cols=297 Identities=16% Similarity=0.290 Sum_probs=225.9
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------eeeeeccCcC------------cceEEEEecCC
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-----------VKLSFHSGHN------------DNVFQAKIMPF 115 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~------------~~v~~~~~~~~ 115 (492)
.|.+.|++++|+|+|++||+|+.||.|+||++.++. ....+ .+|. ..|++++|+|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~- 103 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP- 103 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC-
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC-
Confidence 378999999999999999999999999999998776 34455 6898 8899999999
Q ss_pred CCC--ceEEeecCCCcEEEEecccCCeee--------------------------------------eEEeecCCCceEE
Q 011160 116 TDD--RSIVTCAADGQVRHAQILERGGVE--------------------------------------TKLLGKHQGRAHK 155 (492)
Q Consensus 116 ~~~--~~l~~~~~dg~v~iw~~~~~~~~~--------------------------------------~~~~~~~~~~v~~ 155 (492)
++ ..|++++.||.|++|++..+.... .....+|...|++
T Consensus 104 -~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 104 -QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp -CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred -CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 77 789999999999999997643310 0123679999999
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecc
Q 011160 156 LAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 156 i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~ 234 (492)
++|+|++ .+|++| .|+.|++||+++ +.....+...+. ...+ +...|.+++|+|+++.+|++++.||.|++||++
T Consensus 183 ~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~--~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 183 ISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPA-NMEE--LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCS-SGGG--CCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccc-cccc--cCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 9999998 578888 799999999984 333332211110 1111 566899999999844899999999999999999
Q ss_pred cccccCCCCCCCCccccCCCCcCCCcc------------cceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCC
Q 011160 235 KYKWDGSTDFGQPADYFCPPNLIGDEQ------------VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~ 302 (492)
+++.... .......+. ..|.+++|+|++++|++++++.|++||+...
T Consensus 258 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~---------- 316 (447)
T 3dw8_B 258 ASALCDR-----------HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNME---------- 316 (447)
T ss_dssp TCSSSCT-----------TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCC----------
T ss_pred CCccccc-----------eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCC----------
Confidence 8763211 011222233 4899999999999999998988999999862
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccce-------------eeeeEEeecCCCcEEEEeeccCeEEE
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-------------TVKGVNFFGPKCEYVVSGSDCGRIFI 369 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~~s~~g~~l~sg~~dg~i~i 369 (492)
...+..+.+|.... .+..++| +|++++|++|+.||.|++
T Consensus 317 ---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-s~~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 317 ---------------------------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW-NGSDSVVMTGSYNNFFRM 368 (447)
T ss_dssp ---------------------------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE-CTTSSEEEEECSTTEEEE
T ss_pred ---------------------------ccccceeeccccccccccccccccccccceEEEE-CCCCCEEEEeccCCEEEE
Confidence 23344555554310 0234888 999999999999999999
Q ss_pred EecCCCeeeEEEecC---------------------------------CceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 370 WKKKGGELIRVIEAD---------------------------------RHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 370 wd~~~~~~~~~~~~h---------------------------------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
||+.+++.+. +.+| ...|..++|+|++++||+++.++ +++|.-
T Consensus 369 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 369 FDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred EEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 9999987753 3322 34688999999999999998765 777754
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.6e-39 Score=329.48 Aligned_cols=298 Identities=16% Similarity=0.278 Sum_probs=255.4
Q ss_pred eeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
++...+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.++..+..+ .+|...|.+++|+| ++++|++++.||.
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFR 78 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeC--CCCEEEEEeCCCe
Confidence 45567889999999999999999999999999999999999999988877 68999999999999 9999999999999
Q ss_pred EEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-CccceeecCCCCCCCcceeecceEE
Q 011160 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
|++|++.+++.+.. +.+|...|++++|+|++ ..|++++.||.|++||++++ .....+.. +...|.+
T Consensus 79 i~vw~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~v~~ 145 (814)
T 3mkq_A 79 IRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMC 145 (814)
T ss_dssp EEEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEEC----------CSSCEEE
T ss_pred EEEEECCCCcEEEE--EecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcC----------CCCcEEE
Confidence 99999998877665 78899999999999999 47899999999999999887 33344432 4557999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC--CCCeeEeec-CCcEE
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIY 285 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~-~~~i~ 285 (492)
++|+|.++..|++++.||.|++||+.+++.. ......+...+.+++|+| ++.+|++++ ++.|+
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSSCS--------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcce--------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 9999943789999999999999999775422 122233457899999999 899999988 66899
Q ss_pred EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
+||+.++ ..+..+.+|... |.+++| +|++++|++|+.||
T Consensus 212 ~~d~~~~--------------------------------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 212 IWDYQTK--------------------------------------SCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDG 250 (814)
T ss_dssp EEETTTT--------------------------------------EEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTS
T ss_pred EEECCCC--------------------------------------cEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCC
Confidence 9998763 456677788776 899998 99999999999999
Q ss_pred eEEEEecCCCeeeEEEecCCceeEEEeecCCCCe-EEEeeCCCCEEEeccCCCC
Q 011160 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV-LASSGIESDIKILTPNAAD 418 (492)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~ 418 (492)
.|++||+.+++.+..+..|...|.+++|+|++.. +++++.++.+.+|++....
T Consensus 251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 9999999999999999999999999999999873 3555557889999886543
No 71
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.5e-40 Score=309.45 Aligned_cols=301 Identities=15% Similarity=0.141 Sum_probs=216.3
Q ss_pred CCCCC-CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC-CCCEEEEecC
Q 011160 4 ASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSD 81 (492)
Q Consensus 4 ~~~~~-~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~ 81 (492)
+.|+| ++.+||+|+.||.|+|||+.+++.. ....+.+|.+.|++|+|+| ++++|+||+.
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~ 185 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSM 185 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------EEECCCSSSCCCCEEEECSSCTTEEEEECS
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeC
Confidence 45666 5678999999999999999877644 1245678999999999998 6899999999
Q ss_pred CCeEEEEECCCCceeeeeccC--cCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEc
Q 011160 82 DRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 159 (492)
||+|++||++++.. ..+... +...+.+++|+| ++.+|++|+.||.|++||+.. +.+. .+.+|...|++++|+
T Consensus 186 D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i~~wd~~~-~~~~--~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 186 EGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDG-KELW--NLRMHKKKVTHVALN 259 (435)
T ss_dssp SSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEET--TTTEEEEECSSSBEEEEESSS-CBCC--CSBCCSSCEEEEEEC
T ss_pred CCEEEEeeccCCce-eEEeccCCCCccEEEEEECC--CCCEEEEEeCCCcEeeeccCc-ceeE--EEecccceEEeeeec
Confidence 99999999986654 333233 344678999999 999999999999999999864 3333 378899999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
|+++.+|++++.|+.|++||+++.+....+.... .|...|++++|+|+ +.+|++++.||.|++||+++++..
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~-------~h~~~v~~~~~spd-g~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL-------PHRHPVNAACFSPD-GARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC-------BCSSCEEECCBCTT-SSEEEEEESSSCEEEEESSSSSSE
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEee-------eccccccceeECCC-CCeeEEEcCCCEEEEEECCCCccc
Confidence 9997889999999999999999877654443211 15668999999998 789999999999999999886543
Q ss_pred CCCCCCCC--ccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC-cEEEEecCCCCCCCCCCCCCCCccccccccCCC
Q 011160 240 GSTDFGQP--ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (492)
Q Consensus 240 ~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (492)
........ ................+..+.+++++.+++..+ ++ .|++||..++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g----------------------- 388 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG----------------------- 388 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-----------------------
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-----------------------
Confidence 22111000 000000000111123344455555555544443 33 6999998874
Q ss_pred CCCCCCCCCCCCccccCCcee-eccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeee
Q 011160 316 HTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (492)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~ 378 (492)
..+..+ .+|... |.++..|+|+|++|++|+ |+.|+||++++++..
T Consensus 389 ---------------~~~~~l~~~~~~~--v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 389 ---------------KMMCQLYDPESSG--ISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ---------------CEEEEECCSSCCC--CCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ---------------cEEEEEeCCCCCc--EEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 223333 345554 777743399999999987 789999999988753
No 72
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=296.39 Aligned_cols=298 Identities=13% Similarity=0.132 Sum_probs=238.6
Q ss_pred eeeeeEeecCccceEEEEEEcCC---CCEEEEecCCCeEEEEECCC-CceeeeeccCcCcceEEEEecCCCCCceEEeec
Q 011160 50 RLGIYAKLDKHRGCVNTVSFNTD---GDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (492)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 125 (492)
.+.....+.+|.+.|++++|+|+ |++|++|+.||.|+||++.+ +..+...+.+|...|.+++|+| ++++|++++
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~ 105 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD--DGSKVFTAS 105 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT--TSSEEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc--CCCEEEEEc
Confidence 34555788999999999999999 69999999999999999987 5555344578999999999999 999999999
Q ss_pred CCCcEEEEecccCCeeeeEEeecCCCceEEEEE--cCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 126 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
.||.|++||+.++.... +..|...|++++| +|++ .+|++++.||.|++||+++++.+..+..+
T Consensus 106 ~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------- 170 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLP----------- 170 (368)
T ss_dssp TTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECS-----------
T ss_pred CCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecC-----------
Confidence 99999999998876544 5679999999999 8888 68999999999999999999888777632
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCe----eEee
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL----LVSY 279 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~ 279 (492)
..+.++.+.+ ..+++++.++.+++|+++....... .........+.++.+.++... ++++
T Consensus 171 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 171 ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR-------------RIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE-------------ECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh-------------hccccccCCCceEEEcccCCCCCCeEEEe
Confidence 2466777765 3778888899999999987532111 111122345566666655543 6666
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccce----------eeeeE
Q 011160 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV----------TVKGV 348 (492)
Q Consensus 280 ~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~v~~~ 348 (492)
+ ++.|++|++..... ......+.+|.... .|.++
T Consensus 235 ~~dg~i~i~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNP-----------------------------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp ETTSEEEEEESSCSCH-----------------------------------HHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred cCCCcEEEEecCCCCc-----------------------------------cccceeeeeeecccccccccccccceEEE
Confidence 6 77899999986411 13344555554310 28999
Q ss_pred EeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 349 ~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
+| +|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++-.
T Consensus 280 ~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 280 AF-HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EE-ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 98 99999999999999999999999999999999999999999999999999999998766666544
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.7e-39 Score=292.73 Aligned_cols=290 Identities=10% Similarity=0.099 Sum_probs=237.6
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeccCcCcceEEEEecCCCCCc-eEEeecCCCcE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQV 130 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v 130 (492)
....+|.+.|++++|+|++++|++++.|+.|++|++.++. ....+ .+|...|.+++|+| ++. +|++++.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFID--NTDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEE--SSSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECC--CCCcEEEEEcCCCeE
Confidence 3456899999999999999999999999999999998877 23333 48999999999999 999 99999999999
Q ss_pred EEEec-ccCCeeeeEEeec--CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC---------CCccceeecCCCCCCC
Q 011160 131 RHAQI-LERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---------GAATELFTCRPIDDRR 198 (492)
Q Consensus 131 ~iw~~-~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~ 198 (492)
++|++ .++.. ..+.+ |...|.+++|+| + .+|++++.|+.|++||+++ ++.+..+.
T Consensus 82 ~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------- 148 (342)
T 1yfq_A 82 LKVDLIGSPSF---QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------- 148 (342)
T ss_dssp EEECSSSSSSE---EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--------
T ss_pred EEEEeccCCce---EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--------
Confidence 99999 77654 33777 999999999999 6 6899999999999999987 55544443
Q ss_pred cceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC-CCCee
Q 011160 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELL 276 (492)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 276 (492)
+...+.+++|+|+ + +++++.++.|++||+++ .... .......+...+.+++|+| ++++|
T Consensus 149 ---~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~-------------~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 149 ---VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDN-------------GTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp ---SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCC-------------CEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ---eCCceEEEEecCC-c--EEEEeCCCeEEEEECCcccccc-------------ceeeecCCCCceeEEEECCCCCCEE
Confidence 4457999999986 3 89999999999999987 4321 1112334567899999999 99999
Q ss_pred Eeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccc-------ceeeeeE
Q 011160 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGV 348 (492)
Q Consensus 277 ~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~ 348 (492)
++++ ++.|++|+++....... ......+..|.. ...|.++
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYN--------------------------------SSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTT--------------------------------CTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred EEEecCCcEEEEEEcCCCcccc--------------------------------cccceeeecccccccccccceeEEEE
Confidence 9888 66899999876410000 134455666543 1138999
Q ss_pred EeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecC-CceeEEEeecCCCCeEEEeeCCCC-EEEecc
Q 011160 349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESD-IKILTP 414 (492)
Q Consensus 349 ~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~ 414 (492)
+| +|++++|++|+.||.|++||+.+++++..+.+| .+.|++++ |++++|++++.||. .+.|..
T Consensus 258 ~~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 258 EF-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EE-cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 98 999999999999999999999999999999998 99999999 99999999999998 665553
No 74
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-38 Score=289.27 Aligned_cols=277 Identities=17% Similarity=0.267 Sum_probs=230.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.++|++++|++++ ||.|++|++.+++.... + ......+|...|.+++|+|++++|++++.|
T Consensus 56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~---------------~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 118 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP---------------V-SQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC---------------S-EEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred EEEEecCCcEEEEcC-CCeEEEEECCCCCceee---------------e-ecccccCCCCcEEEEEEcCCCCEEEEEcCC
Confidence 456889999999999 99999999987654311 0 011223799999999999999999999999
Q ss_pred CeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 83 RRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 83 ~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
+.|++||+.+++ ....+ ..|...|.+++|+| ++++|++++.||.|++||+.+++.... +..|...|.+++|+|
T Consensus 119 ~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAEL-TSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISN 193 (337)
T ss_dssp SEEEEEECCCC--EEEEEE-ECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECT
T ss_pred CcEEEEECCCCCcceeeec-ccCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeee--eecccCceEEEEECC
Confidence 999999999877 33444 68899999999999 999999999999999999988766554 778999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccC
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
++ .+|++++.||.|++||+++++....+. +...+.+++|+|+ +.++++++.++.|++||+++.+..
T Consensus 194 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~-----------~~~~v~~~~~s~~-~~~l~~~~~~~~i~~~~~~~~~~~- 259 (337)
T 1gxr_A 194 DG-TKLWTGGLDNTVRSWDLREGRQLQQHD-----------FTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKY- 259 (337)
T ss_dssp TS-SEEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCEE-
T ss_pred CC-CEEEEEecCCcEEEEECCCCceEeeec-----------CCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCCeE-
Confidence 99 588999999999999999988776654 4457899999998 789999999999999999876421
Q ss_pred CCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
....|...|.+++|+|++++|++++ ++.|++|++.++.
T Consensus 260 ---------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-------------------------- 298 (337)
T 1gxr_A 260 ---------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-------------------------- 298 (337)
T ss_dssp ---------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------------------
T ss_pred ---------------EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe--------------------------
Confidence 2234678899999999999999888 6689999998742
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
.. ....|... +.+++| +|++++|++++.||.|++|++
T Consensus 299 ------------~~-~~~~~~~~--v~~~~~-s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 299 ------------SI-FQSKESSS--VLSCDI-SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ------------EE-EEEECSSC--EEEEEE-CTTSCEEEEEETTSCEEEEEE
T ss_pred ------------EE-EEecCCCc--EEEEEE-CCCCCEEEEecCCCeEEEEEE
Confidence 12 22334444 889998 999999999999999999996
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-39 Score=299.07 Aligned_cols=288 Identities=16% Similarity=0.230 Sum_probs=232.0
Q ss_pred ecCccce--EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 57 LDKHRGC--VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 57 ~~~h~~~--v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
..+|... +.+++|++ ..+++++.|+.|++|++.+++....+...|...|.+++|+| ++.+|++|+.||.|++|+
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEETTSCEEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECCCCeEEEEE
Confidence 3466654 44466664 56888889999999999999987777556899999999999 999999999999999999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
+.+++.+.. +.+|...|.+++|++ .+|++++.||.|++||++. ......+.. +...|.+++|+|
T Consensus 163 ~~~~~~~~~--~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~ 227 (401)
T 4aez_A 163 VESQTKLRT--MAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQG----------HSSEVCGLAWRS 227 (401)
T ss_dssp TTTCCEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSCEEEEEECT
T ss_pred CcCCeEEEE--ecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcC----------CCCCeeEEEEcC
Confidence 988876655 778999999999953 5899999999999999984 444444432 556899999999
Q ss_pred CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec---CCcEEEEec
Q 011160 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN---DEFIYLFTQ 289 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~---~~~i~~~d~ 289 (492)
+ +.+|++++.|+.|++||+++++.. .....|...|.+++|+|++. ++++++ ++.|++||+
T Consensus 228 ~-~~~l~s~~~d~~v~iwd~~~~~~~---------------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 228 D-GLQLASGGNDNVVQIWDARSSIPK---------------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp T-SSEEEEEETTSCEEEEETTCSSEE---------------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred C-CCEEEEEeCCCeEEEccCCCCCcc---------------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 7 789999999999999999876532 22334678899999999764 556554 678999999
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE--eeccCeE
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRI 367 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s--g~~dg~i 367 (492)
.++ .....+..+ .. +.+++| +|++++|++ |+.||.|
T Consensus 292 ~~~--------------------------------------~~~~~~~~~-~~--v~~~~~-s~~~~~l~~~~g~~dg~i 329 (401)
T 4aez_A 292 ATG--------------------------------------ARVNTVDAG-SQ--VTSLIW-SPHSKEIMSTHGFPDNNL 329 (401)
T ss_dssp TTC--------------------------------------CEEEEEECS-SC--EEEEEE-CSSSSEEEEEECTTTCEE
T ss_pred CCC--------------------------------------CEEEEEeCC-Cc--EEEEEE-CCCCCeEEEEeecCCCcE
Confidence 874 333444433 32 899998 999999999 5589999
Q ss_pred EEEecCCCeeeE--EEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCc
Q 011160 368 FIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 368 ~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
++|++.+++... .+.+|.+.|.+++|+|++++|++++.||.|++|++.+++...
T Consensus 330 ~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 999999976554 467899999999999999999999999999999999877654
No 76
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1e-39 Score=293.19 Aligned_cols=275 Identities=17% Similarity=0.205 Sum_probs=203.6
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 132 (492)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. +..+ .+|...|++++|+|..++.+|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 45678999999999999999999999999999999987753 3444 79999999999986223789999999999999
Q ss_pred EecccCCeeeeEEeecCCCceEEEEEcCCC-CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEE
Q 011160 133 AQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
||+.++.......+.+|...|++++|+|+. ..+|++++.|+.|++||++.+......... .+ |...+.+++|
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~-----~~--h~~~v~~~~~ 158 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-----NA--HTIGCNAVSW 158 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT-----TS--SSSCBCCCEE
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee-----cc--ccCCcceEEE
Confidence 999877544444578899999999999982 268999999999999999876422111111 11 4557889999
Q ss_pred cCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecC
Q 011160 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (492)
Q Consensus 212 ~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (492)
+|+.. . +.+ .+...+ ...+.+++|++++ |+.|++||+.
T Consensus 159 ~~~~~----~----~~~--~~~~~~-------------------------------~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 159 APAVV----P----GSL--IDHPSG-------------------------------QKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp CCCCC----C------------CCS-------------------------------CCCCCCCBEECCBTTSBCCEEEEC
T ss_pred ccccC----C----ccc--cccccc-------------------------------cCccccceEEEecCCCeEEEEEeC
Confidence 99721 0 000 000000 0012356778777 6689999885
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC----cEEEEeeccCe
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGR 366 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g----~~l~sg~~dg~ 366 (492)
.... ......+.+|... |.+++| +|++ ++||+|+.||+
T Consensus 198 ~~~~-----------------------------------~~~~~~l~~h~~~--V~~v~~-sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 198 EDGQ-----------------------------------WKEEQKLEAHSDW--VRDVAW-APSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp TTSC-----------------------------------EEEEECCBCCSSC--EEEEEC-CCCSSCSCCEEEEEETTCE
T ss_pred CCCc-----------------------------------cceeeecccCCCc--eEEEEe-cCCCCCCCceEEEEcCCCe
Confidence 4210 1234567788876 899998 9986 89999999999
Q ss_pred EEEEecCCC---e-eeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 367 IFIWKKKGG---E-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 367 i~iwd~~~~---~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
|+||++.+. + ....+..|...|.+++|+|++++||+++.|++|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998763 1 2345667889999999999999999999999999999853
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-39 Score=298.03 Aligned_cols=281 Identities=18% Similarity=0.219 Sum_probs=228.1
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-CccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
++..+++++.||.|++||+.+++.. ..+. .|...|++++|+|++++|++|+.||.|++
T Consensus 102 s~~~l~~~~~d~~v~lw~~~~~~~~---------------------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 102 SNLNVVAVALERNVYVWNADSGSVS---------------------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp CTTSEEEEEETTEEEEEETTTCCEE---------------------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cCCCEEEEECCCeEEEeeCCCCcEe---------------------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 3466888889999999999988766 3333 38999999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEE
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
||+.+++.+..+ .+|...|.+++|+ +.+|++++.||.|++||+....... ..+.+|...|.+++|+|++ .+|+
T Consensus 161 wd~~~~~~~~~~-~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~ 233 (401)
T 4aez_A 161 YDVESQTKLRTM-AGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDG-LQLA 233 (401)
T ss_dssp EETTTCCEEEEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-SEEE
T ss_pred EECcCCeEEEEe-cCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCccee-eEEcCCCCCeeEEEEcCCC-CEEE
Confidence 999999988877 6999999999994 4699999999999999998544322 3478899999999999998 5899
Q ss_pred EEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec--CCCeEEEEecccccccCCCCCC
Q 011160 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDFG 245 (492)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~ 245 (492)
+++.|+.|++||+++++....+.. +...|.+++|+|++..++++++ .|+.|++||+++++.....
T Consensus 234 s~~~d~~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--- 300 (401)
T 4aez_A 234 SGGNDNVVQIWDARSSIPKFTKTN----------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--- 300 (401)
T ss_dssp EEETTSCEEEEETTCSSEEEEECC----------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE---
T ss_pred EEeCCCeEEEccCCCCCccEEecC----------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE---
Confidence 999999999999999887766543 4557999999998677888865 7999999999887643221
Q ss_pred CCccccCCCCcCCCcccceEEEEEcCCCCeeEee--c-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 011160 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (492)
.+...|.+++|+|++++|+++ + ++.|++|++.++.
T Consensus 301 -------------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~----------------------------- 338 (401)
T 4aez_A 301 -------------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG----------------------------- 338 (401)
T ss_dssp -------------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-----------------------------
T ss_pred -------------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-----------------------------
Confidence 135679999999999999884 3 6789999987631
Q ss_pred CCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe
Q 011160 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (492)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~ 382 (492)
......+.+|... |.+++| +|+|++|++++.||.|++|++.+++.+....
T Consensus 339 -------~~~~~~~~~h~~~--v~~~~~-s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 339 -------LTKQVDIPAHDTR--VLYSAL-SPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp -------EEEEEEEECCSSC--CCEEEE-CTTSSEEEEECTTSEEEEEECCC--------
T ss_pred -------ceeEEEecCCCCC--EEEEEE-CCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 1223346677776 899998 9999999999999999999999998776543
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=296.38 Aligned_cols=342 Identities=15% Similarity=0.131 Sum_probs=230.9
Q ss_pred CCCCCC-CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeee-----eEeecCccceEEEEEEcC-CCCE
Q 011160 3 DASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGI-----YAKLDKHRGCVNTVSFNT-DGDI 75 (492)
Q Consensus 3 ~~~~~~-~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~s~-~~~~ 75 (492)
.+.|+| ++++|++|+.||.|++||+.+++.... ..... .....+|...|.+++|+| ++.+
T Consensus 48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-------------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-------------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred EEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-------------EeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 356788 999999999999999999998776522 00000 011246999999999999 7789
Q ss_pred EEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCC-CCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceE
Q 011160 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~ 154 (492)
|++++.||.|++||+.+++....+ .+...+.++.|+|.. ++.++++++.+|.|++||+.++..... +..|...|+
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~v~ 190 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEIL 190 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE--ECCCCSCEE
T ss_pred EEEEeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee--ecCCCCcEE
Confidence 999999999999999999887776 477889999999832 344899999999999999988776654 778999999
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc-cceeecCCC-----CCCCcceeecceEEEEEcCCCCceEEEecCCCeE
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPI-----DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 228 (492)
+++|+|+++.+|++++.||.|++||++++.. ...+..... .......+...|.+++|+|+ +.+|++++.||.|
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 269 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRM 269 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeE
Confidence 9999999976789999999999999988762 222211100 00001125668999999998 7899999999999
Q ss_pred EEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
++||+++++....... .............+...+.+.+++++.++.|++||+.+
T Consensus 270 ~vwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------------- 323 (408)
T 4a11_B 270 RLWNSSNGENTLVNYG---------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS----------------- 323 (408)
T ss_dssp EEEETTTCCBCCCCCC---------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT-----------------
T ss_pred EEEECCCCccceeccc---------cccccccccceeEEecCCCceEEEEecCCEEEEEECcC-----------------
Confidence 9999998764322110 00000111122223333445666666688999999987
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCcee
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV 388 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 388 (492)
...+..+.+|... |.+++| +|++++|++|+.||.|++|++.+++.+.....+..
T Consensus 324 ---------------------~~~~~~~~~~~~~--v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-- 377 (408)
T 4a11_B 324 ---------------------GEQITMLKGHYKT--VDCCVF-QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT-- 377 (408)
T ss_dssp ---------------------CCEEEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEEECC--------------
T ss_pred ---------------------CcceeeeccCCCe--EEEEEE-cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe--
Confidence 3556778888876 899998 99999999999999999999999988766554332
Q ss_pred EEEeecC-CCCeEEEeeCCCCEEEeccC
Q 011160 389 NCIEPHP-HSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 389 ~~~~~s~-~~~~l~s~~~dg~i~iw~~~ 415 (492)
...+.+ ....+.+.+.++.+++|+..
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 378 -KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------------
T ss_pred -ccccccccceeecccCccCceeecCCc
Confidence 123333 33445667789999999865
No 79
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-38 Score=293.18 Aligned_cols=283 Identities=14% Similarity=0.195 Sum_probs=239.6
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.|+|++++|++|+.||.|++||+.+++.+ ..+.+|.+.|++++|+|++++|++++.|
T Consensus 37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKDSSASVWYSLNGERL---------------------GTLDGHTGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp EEEECTTSCEEEEEESSSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCchhh---------------------hhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence 4578999999999999999999999988766 7788999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC-----CcEEEEecccCCee---------eeEEeec
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGV---------ETKLLGK 148 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~---------~~~~~~~ 148 (492)
|.|++||+.+++.+..+. +...|.+++|+| ++.+|++++.+ |.|++|++...... ....+..
T Consensus 96 g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWK--SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp TEEEEEETTTCCEEEEEE--CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred CeEEEEECCCCcEEEEee--cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 999999999999888773 888999999999 99999999998 99999999876432 1122445
Q ss_pred CCC--ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC
Q 011160 149 HQG--RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 149 ~~~--~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
|.. .+.+++|+|++ .+|++++.||.|++||+++ ......+.. +...|.+++|+|+ +.+|++++.|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d 239 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDL----------HEKSISDMQFSPD-LTYFITSSRD 239 (369)
T ss_dssp CTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEEC----------CSSCEEEEEECTT-SSEEEEEETT
T ss_pred CcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEec----------CCCceeEEEECCC-CCEEEEecCC
Confidence 555 89999999999 5889999999999999998 555555543 4557999999998 7899999999
Q ss_pred CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC--------------cEEEEecC
Q 011160 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--------------FIYLFTQD 290 (492)
Q Consensus 226 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~--------------~i~~~d~~ 290 (492)
+.|++||+++++..... .+...+.+++|+|+++++++++ ++ .+++|+..
T Consensus 240 ~~i~v~d~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKY----------------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp SEEEEEETTTCCEEEEE----------------ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred ceEEEEECCCCceeeee----------------cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 99999999887643221 1456899999999999998887 44 68889887
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
+ ......+.+|... |.+++| +|++++|++|+.||.|++|
T Consensus 304 ~--------------------------------------~~~~~~~~~~~~~--v~~~~~-s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 304 F--------------------------------------EEEIGRVQGHFGP--LNTVAI-SPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp T--------------------------------------CCEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEEE
T ss_pred C--------------------------------------CcchhheecccCc--EEEEEE-CCCCCEEEEEcCCCeEEEE
Confidence 6 3456677888876 899998 9999999999999999999
Q ss_pred ecCCCeeeE
Q 011160 371 KKKGGELIR 379 (492)
Q Consensus 371 d~~~~~~~~ 379 (492)
++..+....
T Consensus 343 ~~~~~~~~~ 351 (369)
T 3zwl_B 343 HFEKSYFDF 351 (369)
T ss_dssp EECHHHHTC
T ss_pred ECccccchh
Confidence 997765443
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-38 Score=295.61 Aligned_cols=294 Identities=12% Similarity=0.140 Sum_probs=223.6
Q ss_pred CCCCCCCC-ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC-CCCEEEEec
Q 011160 3 DASNNNNN-KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS 80 (492)
Q Consensus 3 ~~~~~~~~-~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~ 80 (492)
.+.|+|++ ++|++|+.||.|+|||+.+++... ...+.+|.+.|.+++|+| ++++|++++
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-------------------FIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp EEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-------------------EECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred EEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-------------------eeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 35678898 899999999999999999776551 123347999999999999 789999999
Q ss_pred CCCeEEEEECCCCceeeeec--cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEE
Q 011160 81 DDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 158 (492)
.|+.|++||+.+ ..+..+. .+|...|.+++|+| ++.+|++++.||.|++||+. ++.+.. +..|...|.+++|
T Consensus 139 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~--~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLD-GHEIFK--EKLHKAKVTHAEF 212 (383)
T ss_dssp TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEEETT-SCEEEE--EECSSSCEEEEEE
T ss_pred CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEEECC-CCEEEE--eccCCCcEEEEEE
Confidence 999999999986 4444442 23457899999999 99999999999999999994 444443 7889999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCC----CccceeecCCCCCCCcceeecceEEEEEcC-CCCceEEEecCCCeEEEEec
Q 011160 159 EPGSPHVFYTCGEDGLVQHFDLRTG----AATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~i~d~ 233 (492)
+|+++.+|++++.|+.|++||+++. .....+. +...|.+++|+| + +.+|++++.|+.|++||+
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~-~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-----------HEKPVNAAYFNPTD-STKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-----------CSSCEEEEEECTTT-SCEEEEEESSSEEEEEET
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-----------CCCceEEEEEcCCC-CCEEEEEcCCCcEEEEEC
Confidence 9999658999999999999999984 3333332 556899999999 7 789999999999999999
Q ss_pred ccccccCCCCCCCCc--cccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccc
Q 011160 234 RKYKWDGSTDFGQPA--DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (492)
Q Consensus 234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (492)
++++........... .........-.....+..++|+|++++ .++.++.|++||+.++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~------------------- 340 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSG------------------- 340 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTC-------------------
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCC-------------------
Confidence 987654332110000 000000011112345667888888888 3333778999999874
Q ss_pred cCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
..+..+.++.....+..++| +|++++|++|+ ||.|+|||+.+
T Consensus 341 -------------------~~~~~l~~~~~~~~~~~~~~-s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 -------------------GLVHQLRDPNAAGIISLNKF-SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -------------------CEEEEECBTTBCSCCCEEEE-CTTSSEEEEEE-TTEEEEEECC-
T ss_pred -------------------ceeeeecCCCCCceEEEEEE-ecCccEEEEec-CCcEEEEecCC
Confidence 44566666443223666788 99999999997 99999999864
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-39 Score=301.14 Aligned_cols=300 Identities=15% Similarity=0.070 Sum_probs=230.5
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC----C---CEE
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----G---DIL 76 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~---~~l 76 (492)
+.|+| ++|++|+.||.|+||++.+++... .+.....+.+|...|++++|+|+ + ++|
T Consensus 22 ~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 22 VSACN--SFTVSCSGDGYLKVWDNKLLDNEN---------------PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEECS--SEEEEEETTSEEEEEESBCCTTCC---------------GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred EEecC--CeEEEEcCCCEEEEEECCCccccc---------------CCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45666 899999999999999999876210 11233677899999999999999 9 999
Q ss_pred EEecCCCeEEEEECCCCce-----eeeeccCc-----CcceEEEEec----CCCCCce-EEeecCCCcEEEEeccc----
Q 011160 77 ISGSDDRRVILWDWKTERV-----KLSFHSGH-----NDNVFQAKIM----PFTDDRS-IVTCAADGQVRHAQILE---- 137 (492)
Q Consensus 77 ~s~~~d~~i~iwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~~~-l~~~~~dg~v~iw~~~~---- 137 (492)
++++.||.|++|++.+++. ...+ ..| ...|.+++|+ | ++.+ |++++.||.|++||+..
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDR--LLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCC--CCceEEEEEeCCCcEEEEeCCccccc
Confidence 9999999999999988875 5665 677 5899999999 8 9999 99999999999999988
Q ss_pred --CCeee-----eEEe-----ecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCccee---
Q 011160 138 --RGGVE-----TKLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT--- 202 (492)
Q Consensus 138 --~~~~~-----~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--- 202 (492)
+..+. .... ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+.... .+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~h~~~ 232 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQH-------SMINN 232 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC----------CC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccc-------ccccc
Confidence 55443 3111 4588999999999998 78999999999999999988877766410 02
Q ss_pred ecceEEEEEcCCCCceEEEecCC---CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (492)
...+.+++|+|+ +.+|++++.| +.|++||+++++............ ........|...|.+++|+|++++|+++
T Consensus 233 ~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 233 SNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS--QASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp CCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred CCccceEEECCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCcccc--cccccccccCCcEEEEEECCCCCEEEEE
Confidence 457999999998 7899999999 999999998876432211000000 0000001167899999999999999998
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee------cc-------------
Q 011160 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK------GH------------- 339 (492)
Q Consensus 280 ~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------- 339 (492)
+ ++.|++||+.++. .+..+. +|
T Consensus 310 ~~dg~i~iwd~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (397)
T 1sq9_A 310 GWDGKLRFWDVKTKE--------------------------------------RITTLNMHCDDIEIEEDILAVDEHGDS 351 (397)
T ss_dssp ETTSEEEEEETTTTE--------------------------------------EEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred eCCCeEEEEEcCCCc--------------------------------------eeEEEecccCcccchhhhhcccccccc
Confidence 8 6689999998742 233333 33
Q ss_pred --ccceeeeeEEeecCCC----------cEEEEeeccCeEEEEecCCCe
Q 011160 340 --RNCVTVKGVNFFGPKC----------EYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 340 --~~~~~v~~~~~~s~~g----------~~l~sg~~dg~i~iwd~~~~~ 376 (492)
... |.+++| +|+| ++|++|+.||.|++|++.+|+
T Consensus 352 ~~~~~--v~~~~~-~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 352 LAEPG--VFDVKF-LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CSSCC--EEEEEE-ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccCCc--eeEEEe-ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 554 899998 9998 799999999999999998764
No 82
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-39 Score=302.40 Aligned_cols=298 Identities=13% Similarity=0.112 Sum_probs=232.1
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
.+++++|+|++++|++++.|+.|++||+.+++....+ ..| ..+....|+| ++++|++++.||.|++|++.++....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECS--SSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEec--CCCEEEEEECCCCEEEEeCCCcceee
Confidence 3457999999999999999999999999887765544 444 4455557888 99999999999999999998766544
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
. +.+|...|++++|+|++ .+|++++.|+.|++||+++++....+.. |...|.+++|+|+ +.+|+++
T Consensus 134 ~--~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~ 199 (420)
T 3vl1_A 134 I--DQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIG----------HRATVTDIAIIDR-GRNVLSA 199 (420)
T ss_dssp E--TTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEEC----------CSSCEEEEEEETT-TTEEEEE
T ss_pred e--cccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcC----------CCCcEEEEEEcCC-CCEEEEE
Confidence 3 67899999999999998 5899999999999999999988777653 5568999999998 7899999
Q ss_pred cCCCeEEEEecccccccCCCCCCCCc----cc-----cCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 223 GSDEYTRLYDIRKYKWDGSTDFGQPA----DY-----FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 223 ~~dg~v~i~d~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
+.|+.|++||+++++........... .. .........+...+.+++|+|++++|++++ ++.|++||+.++
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999987654432211000 00 000001111235566677789999999888 668999999874
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEeeccCeEEEEe
Q 011160 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWK 371 (492)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~~dg~i~iwd 371 (492)
. .......+|... |.+++| +|+++ +|++|+.||.|++||
T Consensus 280 ~-------------------------------------~~~~~~~~~~~~--v~~~~~-~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 280 E-------------------------------------QTIQLPSKFTCS--CNSLTV-DGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp C-------------------------------------EEEEECCTTSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEE
T ss_pred c-------------------------------------eeEEcccccCCC--ceeEEE-eCCCCCEEEEEeCCCeEEEEE
Confidence 2 112222345554 899998 99999 999999999999999
Q ss_pred cCCCee-eEEEec-CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 372 KKGGEL-IRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 372 ~~~~~~-~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
+.+++. +..+.. |...|+++.| +++++|++++.|+.|++|++...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred cCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 998754 777776 6667888855 5788999999999999999987543
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=292.98 Aligned_cols=305 Identities=12% Similarity=0.093 Sum_probs=230.4
Q ss_pred CCCCCCCCce-EeeccC---cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC---CCE
Q 011160 3 DASNNNNNKR-ARTSVD---KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---GDI 75 (492)
Q Consensus 3 ~~~~~~~~~~-l~t~~~---dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~ 75 (492)
++.|+|+++. +++|+. ||.|+|||+.+++... ....+|...|++++|+|+ +++
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--------------------~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--------------------LREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE--------------------EEEEEESSCEEEEECTTCCTTTCC
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc--------------------eeeecccCcEEEEEEcCCCCCCce
Confidence 4568898865 556665 9999999999877541 122368999999999998 699
Q ss_pred EEEecCCCeEEEEECCCCc-eeeeeccCcCcceEEEEe------cCCCCCceEEeecCCCcEEEEecccCC-eeeeEEee
Q 011160 76 LISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKI------MPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLG 147 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~------~~~~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~ 147 (492)
|++|+.||.|++||+.+++ .+..+ .+|...|.++.| +| ++++|++++.||.|++||+.++. .... +.
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~ 157 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGE--GAPEIVTGSRDGTVKVWDPRQKDDPVAN--ME 157 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC---CCCEEEEEETTSCEEEECTTSCSSCSEE--EC
T ss_pred EEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCC--CccEEEEEeCCCeEEEEeCCCCCCccee--cc
Confidence 9999999999999999888 65665 789999999955 67 89999999999999999998876 3333 44
Q ss_pred cCC----CceEEEE----EcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC---CCC
Q 011160 148 KHQ----GRAHKLA----IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP---RNA 216 (492)
Q Consensus 148 ~~~----~~v~~i~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~ 216 (492)
.|. ..+.+++ |+|++ .+|++++.||.|++||+++++...... +...+.+++|+| + +
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~-~ 224 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWETN-----------IKNGVCSLEFDRKDIS-M 224 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEESCSSSS-C
T ss_pred ccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeeecC-----------CCCceEEEEcCCCCCC-C
Confidence 443 3888998 67888 589999999999999999988654433 455799999999 6 6
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec-CCcEEEEecCCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLG 294 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~~~ 294 (492)
.+|++++.||.|++||+++++....... .....|...|.+++|+|+++ +|++++ ++.|++|++.....
T Consensus 225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMRTQHPTKGFAS----------VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp CEEEEEESTTEEEEEEEEEEETTTEEEE----------EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred CEEEEECCCCeEEEEeCcCCCcccceee----------eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 8999999999999999998763321100 01225788999999999998 788877 67899999987643
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEE-EeeccCeEEEEecC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKK 373 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~-sg~~dg~i~iwd~~ 373 (492)
.......... .. .......+..+.+|... |.+++| +|++++|+ +++.||.|++|++.
T Consensus 295 ~~~~~~~g~~--------------~~-----~~~~~~~~~~~~~~~~~--v~~~~~-s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 295 RSKKDSEGIE--------------MG-----VAGSVSLLQNVTLSTQP--ISSLDW-SPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp C--CCTTSCC--------------CC-----CCCEEEEEEEEECCSSC--EEEEEE-CSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccccCCCCc--------------cc-----cccccceeeccccCCCC--eeEEEE-cCCCCeEEEEecCCCcEEEEECC
Confidence 3221110000 00 00012456677888776 899999 99999998 89999999999998
Q ss_pred CCee
Q 011160 374 GGEL 377 (492)
Q Consensus 374 ~~~~ 377 (492)
+.+.
T Consensus 353 ~~~~ 356 (357)
T 3i2n_A 353 KLNK 356 (357)
T ss_dssp C---
T ss_pred Cccc
Confidence 7654
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-37 Score=296.54 Aligned_cols=295 Identities=16% Similarity=0.205 Sum_probs=239.3
Q ss_pred eeEeecCccce-EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 53 IYAKLDKHRGC-VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 53 ~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
....+.+|.+. +.++.+ ++++|++|+.||+|++||+.+++.+..+ .+|...|.+++|+| ++ .|++|+.||.|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~--~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH--GG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECS--TT-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcC--CC-EEEEEeCCCCEE
Confidence 44678899887 466666 5679999999999999999999988887 79999999999998 66 899999999999
Q ss_pred EEecccCCeeeeEEeecCCCceEEEEEcC--CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCC---------------
Q 011160 132 HAQILERGGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI--------------- 194 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------------- 194 (492)
+||+.+++.... +.+|...|.+++|++ ++ .++++++.||.|++||++++...........
T Consensus 187 vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 187 VWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEETTTTEEEEE--ECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEECCCCcEEEE--ECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 999998876654 788999999999984 55 6899999999999999998765432111000
Q ss_pred CCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC
Q 011160 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (492)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (492)
....+ +...+.++ +++ +.++++++.||.|++||+++++... ....|...|.+++|+|+++
T Consensus 264 ~~~~~--~~~~v~~~--~~~-~~~l~~~~~d~~i~vwd~~~~~~~~---------------~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 264 GVLRG--HMASVRTV--SGH-GNIVVSGSYDNTLIVWDVAQMKCLY---------------ILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp EEECC--CSSCEEEE--EEE-TTEEEEEETTSCEEEEETTTTEEEE---------------EECCCSSCEEEEEEETTTT
T ss_pred EEccC--ccceEEEE--cCC-CCEEEEEeCCCeEEEEECCCCcEEE---------------EecCCCCCEEEEEEcCCCC
Confidence 00011 34456666 444 5799999999999999998876432 2345778999999999999
Q ss_pred eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC
Q 011160 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (492)
Q Consensus 275 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 353 (492)
+|++++ ++.|++||+.+ ...+..+.+|... |.++.| +
T Consensus 324 ~l~sg~~dg~i~vwd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~- 361 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLEN--------------------------------------GELMYTLQGHTAL--VGLLRL-S- 361 (464)
T ss_dssp EEEEEETTSCEEEEETTT--------------------------------------TEEEEEECCCSSC--EEEEEE-C-
T ss_pred EEEEEeCCCcEEEEECCC--------------------------------------CcEEEEEeCCCCc--EEEEEE-c-
Confidence 999988 66899999987 3566778888876 888887 5
Q ss_pred CCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCc
Q 011160 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 354 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
+++|++|+.||.|++||+.+++....+. |...+..++|+|++++|++++ ||.|++|++.+++...
T Consensus 362 -~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 362 -DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp -SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred -CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 5899999999999999999988766664 666788899999999999998 9999999999987654
No 85
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-37 Score=284.31 Aligned_cols=310 Identities=12% Similarity=0.117 Sum_probs=224.1
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
..+.+|.+.|++++|+|++++|++|+.||.|++|++.++. ....+ .+|...|.+++|+|..++.+|++++.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 5578999999999999999999999999999999998764 33444 689999999999982238999999999999
Q ss_pred EEEecccCCe-------eeeEEeecCCCceEEEEEcCC--CCcEEEEEcCCCcEEEEeCCCCCccceeecCCC---CCCC
Q 011160 131 RHAQILERGG-------VETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI---DDRR 198 (492)
Q Consensus 131 ~iw~~~~~~~-------~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~ 198 (492)
++||+..+.. .....+..|...|.+++|+|+ + .+|++++.||.|++||+++++.+..+..... ....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999987642 223447789999999999999 7 6899999999999999999887655432110 0001
Q ss_pred cceeecceEEEEEcCC--CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC---
Q 011160 199 NYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--- 273 (492)
Q Consensus 199 ~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--- 273 (492)
...+...+.+++|+|+ ++.++++++.++.+.+|+...++.. .......|...|.+++|+|++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-------------VAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-------------EEEECCCCCSCEEEEEECCCSSCS
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-------------eeeecCCCCcceeEEEECCCCCCc
Confidence 1125567999999996 4679999999999988887665421 112344578899999999998
Q ss_pred -CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee
Q 011160 274 -ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (492)
Q Consensus 274 -~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (492)
++|++++ ++.|++||+..+..... ...+... +.....
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------------~~~~~~~--~~~~~~- 268 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLA--------------------------------------SEESLTN--SNMFDN- 268 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC----------------------------------------------------------
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCccc--------------------------------------cCCcccc--eeccCC-
Confidence 7888888 67899999987432111 0011100 112222
Q ss_pred cCCCcEEEE----eeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 352 GPKCEYVVS----GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 352 s~~g~~l~s----g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
++....++. +.....+.+|+....+++..+.+|...|++++|+|++++|++++.||.|++|++.+++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 269 SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 333333333 334556777887788889999999999999999999999999999999999999886543
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-37 Score=276.79 Aligned_cols=247 Identities=18% Similarity=0.217 Sum_probs=197.6
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC--CCEEEEec
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISGS 80 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~ 80 (492)
++.|+|++++||+|+.|++|+|||+..+.. ++..++.+|.++|++++|+|+ +++|++|+
T Consensus 14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s 74 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74 (297)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------EEEEEEccccCCeEEEEecCCCcCCEEEEEc
Confidence 467899999999999999999999974321 123778999999999999864 89999999
Q ss_pred CCCeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCC--CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEE
Q 011160 81 DDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 81 ~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i 156 (492)
.|++|+|||+.++. .+..+ .+|...|.+++|+| + +.+|++++.|+.|++|++..........+.+|...|.++
T Consensus 75 ~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p--~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 75 YDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (297)
T ss_dssp TTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred CCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCc--CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence 99999999998774 33344 68999999999999 6 789999999999999999876433334578899999999
Q ss_pred EEcCCC------------CcEEEEEcCCCcEEEEeCCCCCc----cceeecCCCCCCCcceeecceEEEEEcCCC--Cce
Q 011160 157 AIEPGS------------PHVFYTCGEDGLVQHFDLRTGAA----TELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANL 218 (492)
Q Consensus 157 ~~~~~~------------~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~ 218 (492)
+|+|++ ..+|++|+.|+.|++||++++.. ...+.. |...|.+++|+|++ +.+
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~----------H~~~V~~v~~sp~~~~~~~ 221 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG----------HSDWVRDVAWSPTVLLRSY 221 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC----------CSSCEEEEEECCCCSSSEE
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC----------CCCceEEEEECCCCCCceE
Confidence 999973 25899999999999999988763 222221 55689999999984 479
Q ss_pred EEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCC
Q 011160 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (492)
|++++.|++|++||++....... . .......+...|.+++|+|++++|++++ ++.|++|+...
T Consensus 222 las~s~D~~v~iWd~~~~~~~~~--------~--~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 222 MASVSQDRTCIIWTQDNEQGPWK--------K--TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEETTSCEEEEEESSTTSCCE--------E--EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEECCCcEEEEEeCCCCCccc--------e--eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999999999976421000 0 0000134567899999999999999888 66899999864
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.9e-37 Score=289.56 Aligned_cols=307 Identities=16% Similarity=0.273 Sum_probs=247.8
Q ss_pred eeeEeecCccceE-EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 52 GIYAKLDKHRGCV-NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 52 ~~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
.....+.+|.+.| .++. +++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+ +.+|++|+.||.|
T Consensus 109 ~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~~~dg~i 181 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR----DNIIISGSTDRTL 181 (445)
T ss_dssp CCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE----TTEEEEEETTSCE
T ss_pred ceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec----CCEEEEEeCCCeE
Confidence 3456788999865 5544 46899999999999999999999988777 7999999999996 4689999999999
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
++||+.+++.... +.+|...|.++.|++ ..+++++.||.|++||+++++....+.. +...+.+++
T Consensus 182 ~vwd~~~~~~~~~--~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~----------~~~~v~~~~ 246 (445)
T 2ovr_B 182 KVWNAETGECIHT--LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMG----------HVAAVRCVQ 246 (445)
T ss_dssp EEEETTTTEEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEEC----------CSSCEEEEE
T ss_pred EEEECCcCcEEEE--ECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcC----------CcccEEEEE
Confidence 9999988876654 788999999999964 4689999999999999999988777654 455789999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (492)
| + +.++++++.||.|++||+++++... ....|...|.++.| ++.++++++ ++.|++||+
T Consensus 247 ~--~-~~~l~~~~~dg~i~iwd~~~~~~~~---------------~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~ 306 (445)
T 2ovr_B 247 Y--D-GRRVVSGAYDFMVKVWDPETETCLH---------------TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV 306 (445)
T ss_dssp E--C-SSCEEEEETTSCEEEEEGGGTEEEE---------------EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEET
T ss_pred E--C-CCEEEEEcCCCEEEEEECCCCcEeE---------------EecCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC
Confidence 9 3 5789999999999999998876432 23356788999999 778888887 778999999
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEE
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~i 369 (492)
.++ ..+..+.+|... +.++.+ ++++|++|+.||.|++
T Consensus 307 ~~~--------------------------------------~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~dg~i~v 343 (445)
T 2ovr_B 307 ETG--------------------------------------NCIHTLTGHQSL--TSGMEL---KDNILVSGNADSTVKI 343 (445)
T ss_dssp TTC--------------------------------------CEEEEECCCCSC--EEEEEE---ETTEEEEEETTSCEEE
T ss_pred CCC--------------------------------------CEEEEEcCCccc--EEEEEE---eCCEEEEEeCCCeEEE
Confidence 873 445667777765 666654 5779999999999999
Q ss_pred EecCCCeeeEEEec---CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcccCcccccccccccccccccCchhh
Q 011160 370 WKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQFKPKATRWMHHVLSPEDL 446 (492)
Q Consensus 370 wd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (492)
||+.+++.+..+.+ |...|++++|+ +++|++++.||.|++|++.+++......... ...+.+.+..++++++.
T Consensus 344 wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE--SGGSGGVVWRIRASNTK 419 (445)
T ss_dssp EETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT--TGGGTCEEEEEEECSSE
T ss_pred EECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc--cCCCCceEEEEEecCCE
Confidence 99999999999986 88899999995 5899999999999999999887543221000 01145566667765554
Q ss_pred H
Q 011160 447 M 447 (492)
Q Consensus 447 ~ 447 (492)
.
T Consensus 420 ~ 420 (445)
T 2ovr_B 420 L 420 (445)
T ss_dssp E
T ss_pred E
Confidence 3
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.1e-37 Score=289.54 Aligned_cols=282 Identities=21% Similarity=0.317 Sum_probs=231.3
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
....+|...|++++| ++++|++|+.||.|++||+.+++....+ .+|...|.+++| ++++|++|+.||.|++||
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY----DERVIITGSSDSTVRVWD 199 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC----CSSEEEEEETTSCEEEEE
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE----CCCEEEEEcCCCeEEEEE
Confidence 344567788999887 7899999999999999999999988777 799999999998 578999999999999999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
+.+++.... +.+|...|.+++|++ ..+++++.||.|++||++++.......... + +...|.+++|.
T Consensus 200 ~~~~~~~~~--~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~--~~~~v~~~~~~-- 265 (435)
T 1p22_A 200 VNTGEMLNT--LIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLV-----G--HRAAVNVVDFD-- 265 (435)
T ss_dssp SSSCCEEEE--ECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEEC-----C--CSSCEEEEEEE--
T ss_pred CCCCcEEEE--EcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEec-----C--CCCcEEEEEeC--
Confidence 998877655 788999999999974 478999999999999999887653222111 1 55678999993
Q ss_pred CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
+.++++|+.||.|++||+++++... ....|...|.++.++ +.+|++++ ++.|++||+.++
T Consensus 266 -~~~l~s~~~dg~i~vwd~~~~~~~~---------------~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~- 326 (435)
T 1p22_A 266 -DKYIVSASGDRTIKVWNTSTCEFVR---------------TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG- 326 (435)
T ss_dssp -TTEEEEEETTSEEEEEETTTCCEEE---------------EEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-
T ss_pred -CCEEEEEeCCCeEEEEECCcCcEEE---------------EEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC-
Confidence 5799999999999999998876432 233567889999994 67888877 678999999873
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
..+..+.+|... |.++.| ++++|++|+.||.|++||+.
T Consensus 327 -------------------------------------~~~~~~~~h~~~--v~~~~~---~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 327 -------------------------------------ACLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp -------------------------------------CEEEEECCCSSC--EEEEEC---CSSEEEEEETTSCEEEEEHH
T ss_pred -------------------------------------CEEEEEeCCcCc--EEEEEe---cCCEEEEEeCCCcEEEEECC
Confidence 456677888876 888876 68899999999999999997
Q ss_pred CCe---------eeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 374 GGE---------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 374 ~~~---------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+++ ++..+.+|.+.|++++| ++++|++++.||+|++|++.+....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp HHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred CCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 766 78899999999999999 7889999999999999999876544
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.5e-38 Score=287.79 Aligned_cols=310 Identities=12% Similarity=0.081 Sum_probs=229.7
Q ss_pred CCCCC----CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC----CCE
Q 011160 4 ASNNN----NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GDI 75 (492)
Q Consensus 4 ~~~~~----~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~ 75 (492)
+.|+| ....+++++.++.|+||++.+++.+. .+.. .....|...|++++|+|+ +++
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~---------------~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR---------------LLQS-YVDADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE---------------EEEE-EECSCTTCCEEEEEEEECTTTCCEE
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE---------------eeee-ccccCCCCcEEEEEeccCCCCCCCE
Confidence 45665 35556667778899999999876551 1110 111237788999999998 679
Q ss_pred EEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEe---ecCCCc
Q 011160 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQGR 152 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~---~~~~~~ 152 (492)
|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|. ++.+|++++.||.|++||+.+++.... + ..|...
T Consensus 88 l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~ 163 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAI--FGGVEGHRDE 163 (366)
T ss_dssp EEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEE--ECSTTSCSSC
T ss_pred EEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEE--ecccccccCc
Confidence 999999999999999999988877 689999999999982 578899999999999999988766554 4 679999
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCC------------------CCCcceeecceEEEEEcCC
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID------------------DRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~~p~ 214 (492)
|.+++|+|++ .+|++++.||.|++||+++++....+...... ......+...|.+++|+
T Consensus 164 v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 164 VLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred eeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 9999999998 58999999999999999987765433210000 00000145679999998
Q ss_pred CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC--CCeeEeec-CCcEEEEecCC
Q 011160 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~-~~~i~~~d~~~ 291 (492)
+.++++++.|+.|++||+++.+........ .............|...|.+++|+|+ +++|++++ ++.|++||+.+
T Consensus 241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKP-SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp -TTEEEEECSSSEEEEEEESSTTCCGGGCCT-TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred -CCEEEEEecCCEEEEEeCCCcccccccccc-CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 359999999999999999876532111000 00000111223446678999999999 99999988 66899999987
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
+... ......+.+|.....|.+++| +|++++|++|+.||.|++||
T Consensus 319 ~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 319 EDPH----------------------------------KAKCTTLTHHKCGAAIRQTSF-SRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp SSGG----------------------------------GCEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTSEEEEEE
T ss_pred CCCc----------------------------------cccceEEcccccCCceEEEEe-CCCCCeEEEEeCCCEEEEEE
Confidence 4211 112346677743334999999 99999999999999999999
Q ss_pred cC
Q 011160 372 KK 373 (492)
Q Consensus 372 ~~ 373 (492)
+.
T Consensus 364 ~~ 365 (366)
T 3k26_A 364 RL 365 (366)
T ss_dssp C-
T ss_pred ec
Confidence 85
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=285.22 Aligned_cols=261 Identities=16% Similarity=0.271 Sum_probs=210.0
Q ss_pred eEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECC--CCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
...+.+|.+.|++++|+|++++|++|+.||.|+||++. ++..+..+ .+|...|++++|+|..++.+|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 36788999999999999999999999999999999997 44455555 7899999999999811289999999999999
Q ss_pred EEecccCCeeeeEEeecCCCceEEEEEcCC--CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 132 HAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
+||+.++.......+..|...|.+++|+|+ + .+|++++.|+.|++||++++.......... +...|.++
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------~~~~v~~~ 153 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVNSA 153 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEEC--------CTTCEEEE
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecC--------CCCceEEE
Confidence 999998875455557889999999999999 7 689999999999999999885544332211 55679999
Q ss_pred EEcCC------------CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeE
Q 011160 210 AIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (492)
Q Consensus 210 ~~~p~------------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 277 (492)
+|+|. ++.+|++++.||.|++||+++.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------------------- 195 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------------- 195 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--------------------------------------
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--------------------------------------
Confidence 99994 2567777777777777777643200
Q ss_pred eecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC---
Q 011160 278 SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--- 354 (492)
Q Consensus 278 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~--- 354 (492)
......+.+|... |.+++| +|+
T Consensus 196 ----------------------------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~ 220 (379)
T 3jrp_A 196 ----------------------------------------------------YVLESTLEGHSDW--VRDVAW-SPTVLL 220 (379)
T ss_dssp ----------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCCCSS
T ss_pred ----------------------------------------------------eeeEEEEecccCc--EeEEEE-CCCCCC
Confidence 0122344556665 889998 999
Q ss_pred CcEEEEeeccCeEEEEecCCCe---eeEEE--ecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 355 CEYVVSGSDCGRIFIWKKKGGE---LIRVI--EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 355 g~~l~sg~~dg~i~iwd~~~~~---~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
+++|++++.||.|++||+.++. ....+ ..|...|++++|+|++++|++++.||.|++|++..+
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8999999999999999998874 22222 347889999999999999999999999999999854
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.2e-38 Score=286.13 Aligned_cols=292 Identities=14% Similarity=0.106 Sum_probs=213.7
Q ss_pred CCCCCCCCceEeeccCcc-------eEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCE
Q 011160 3 DASNNNNNKRARTSVDKA-------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI 75 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg-------~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 75 (492)
++.|+|++++||+|+.+. .|+||++..+..... ..........|.+|...|.+++++ +..
T Consensus 19 sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~v~s~~~~--~~~ 85 (365)
T 4h5i_A 19 GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-----------EQFHILSEFALEDNDDSPTAIDAS--KGI 85 (365)
T ss_dssp EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH-----------HHEEEEEEEECCTTSCCCCEEEEE--TTE
T ss_pred EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee-----------eeeeeeeEEEccCCCCceEEEEeC--CCE
Confidence 366889999999987543 599999986543311 001111224577888899888875 445
Q ss_pred EEEe-----------cCCCeEEEEECCCCceeeee--------ccCcCcceEEEEecCCCCCceEEee--cCCCcEEEEe
Q 011160 76 LISG-----------SDDRRVILWDWKTERVKLSF--------HSGHNDNVFQAKIMPFTDDRSIVTC--AADGQVRHAQ 134 (492)
Q Consensus 76 l~s~-----------~~d~~i~iwd~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~v~iw~ 134 (492)
+++| +.|+.+++|++........+ ...+...+.+++|+| ||++|+++ +.|++|+|||
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp--Dg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR--EGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT--TSSCEEEEESCSSCEEEEEE
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC--CCCEEEEEECCCCCEEEEeE
Confidence 5554 56788999998765432221 123445688999999 99998754 4789999999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
+.++..+.. + .|...|.+++|+|++ .++++++. +.+.+|+..++.......... +...+.+++|+|+
T Consensus 164 ~~~~~~~~~--~-~~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~v~fspd 230 (365)
T 4h5i_A 164 PSDLTEKFE--I-ETRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKTDFD--------KNWSLSKINFIAD 230 (365)
T ss_dssp TTTTEEEEE--E-ECSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEECCCC--------TTEEEEEEEEEET
T ss_pred CCCCcEEEE--e-CCCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeeecCC--------CCCCEEEEEEcCC
Confidence 998776654 4 477889999999999 57788875 557777777776554322111 4557999999998
Q ss_pred CCceEEEecCCC----eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec
Q 011160 215 NANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (492)
Q Consensus 215 ~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (492)
+.++++++.++ .+++|++........ .......|...|++++|+|+|++||+++ |+.|+|||+
T Consensus 231 -g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 231 -DTVLIAASLKKGKGIVLTKISIKSGNTSVL-----------RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp -TEEEEEEEESSSCCEEEEEEEEETTEEEEE-----------EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred -CCEEEEEecCCcceeEEeecccccceecce-----------eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 78888888777 688898876532100 1122345678899999999999999998 668999999
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCce-eeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV-YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
.++ +.+.. +.+|... |++++| +|||++||+|+.|++|+
T Consensus 299 ~~~--------------------------------------~~~~~~~~gH~~~--V~~v~f-Spdg~~laS~S~D~tvr 337 (365)
T 4h5i_A 299 KDL--------------------------------------SMSKIFKQAHSFA--ITEVTI-SPDSTYVASVSAANTIH 337 (365)
T ss_dssp TTT--------------------------------------EEEEEETTSSSSC--EEEEEE-CTTSCEEEEEETTSEEE
T ss_pred CCC--------------------------------------cEEEEecCcccCC--EEEEEE-CCCCCEEEEEeCCCeEE
Confidence 873 44554 4789887 999999 99999999999999999
Q ss_pred EEecCCC
Q 011160 369 IWKKKGG 375 (492)
Q Consensus 369 iwd~~~~ 375 (492)
||++...
T Consensus 338 vw~ip~~ 344 (365)
T 4h5i_A 338 IIKLPLN 344 (365)
T ss_dssp EEECCTT
T ss_pred EEEcCCC
Confidence 9999643
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-37 Score=276.34 Aligned_cols=276 Identities=13% Similarity=0.180 Sum_probs=222.4
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+.| +++++|++|+.||.|++||+.+++.. ..+..|.+.|.+++|+|++++|++++.||
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLG---------------------TVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESSSEEE---------------------EEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCCCEEE---------------------EEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 456 78999999999999999999877655 66778999999999999999999999999
Q ss_pred eEEEEECCCC---ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 84 RVILWDWKTE---RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 84 ~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.|++|++... +....+ .+|...|.+++| ++.+|++++.||.|++|| ...... .+..|...+.+++|.|
T Consensus 82 ~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~--~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTL-IGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVY--NLQAHNASVWDAKVVS 152 (313)
T ss_dssp CEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEE--EEECCSSCEEEEEEEE
T ss_pred eEEEEEeeecCCCCcccch-hhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEE--ecccCCCceeEEEEcc
Confidence 9999998764 334444 789999999999 457899999999999999 333333 3778999999999998
Q ss_pred -CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc
Q 011160 161 -GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 161 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~ 239 (492)
++ .++++++.||.|++||. .+....+... +...+.+++|+|+ +. +++++.+|.|++||+++++..
T Consensus 153 ~~~-~~l~~~~~d~~i~i~d~--~~~~~~~~~~---------~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 153 FSE-NKFLTASADKTIKLWQN--DKVIKTFSGI---------HNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp TTT-TEEEEEETTSCEEEEET--TEEEEEECSS---------CSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEE
T ss_pred CCC-CEEEEEECCCCEEEEec--CceEEEEecc---------CcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhh
Confidence 55 68999999999999993 3333333221 4457999999997 45 899999999999999887533
Q ss_pred CCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 011160 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (492)
. ....|...|.+++|+|++.+++++.++.|++||+.++
T Consensus 219 ~---------------~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------------------------- 256 (313)
T 3odt_A 219 R---------------TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG--------------------------- 256 (313)
T ss_dssp E---------------EEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---------------------------
T ss_pred h---------------hhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---------------------------
Confidence 2 2335678999999999996554445889999999873
Q ss_pred CCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE
Q 011160 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 381 (492)
.....+..|... |.+++| +|+++ +++++.||.|++|++.+++.+...
T Consensus 257 -----------~~~~~~~~~~~~--i~~~~~-~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 257 -----------SLKQVITLPAIS--IWSVDC-MSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp -----------CEEEEEECSSSC--EEEEEE-CTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred -----------ceeEEEeccCce--EEEEEE-ccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 455667777765 899998 99998 556889999999999988766544
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=284.74 Aligned_cols=296 Identities=10% Similarity=0.008 Sum_probs=219.0
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
.++.++|||+++|+++.|++|+ |..++ +.+.+|...|.+++|+|+| .
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~------------------------~~l~gh~~~v~~V~FsPdg-------~ 65 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYA------------------------KDINCNSKNLFHVKEFPLE-------F 65 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCC------------------------SCCSSBGGGTEEEEEECCC-------C
T ss_pred EEEEECCCCCEEEEEcCCceee--ccccc------------------------ceecCCCccEEEEEECCCC-------C
Confidence 5788999999999999999999 64433 3347899999999999999 4
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC-----ceEEE
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-----RAHKL 156 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~-----~v~~i 156 (492)
++.+.+|+. +....+...|...|.+++|+| +|.+||+++.||.|++|+... ... .+. |.. .|.++
T Consensus 66 ~~~~~~~~~---~~~~~~~~~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~--~l~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 66 ENKLDFELA---QQNGLLNSQPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLT--NLD-SKGNLSSRTYHCF 135 (588)
T ss_dssp CCTTTTSCC---CSSCSSTTSCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEE--ECC-CSSCSTTTCEEEE
T ss_pred cceEEEEeC---CCceEeecCCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eee--ecc-CCCccccccEEEE
Confidence 565555553 322222225688999999999 999999999999999999543 222 245 554 59999
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCCc-------cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEE
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 229 (492)
+|+|+| ++|++|+.||+|++||+.++.. +..+.... .+ |...|.+++|+|+ + +++++.|+.|+
T Consensus 136 afSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~----~g--h~~~V~sVawSPd-g--Laass~D~tVr 205 (588)
T 2j04_A 136 EWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD----AG--SKDWVTHIVWYED-V--LVAALSNNSVF 205 (588)
T ss_dssp EECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC----TT--CCCCEEEEEEETT-E--EEEEETTCCEE
T ss_pred EEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc----cc--ccccEEEEEEcCC-c--EEEEeCCCeEE
Confidence 999999 6899999999999999998753 22332111 12 4468999999998 5 78888999999
Q ss_pred EEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccc
Q 011160 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (492)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (492)
+||+..++.... ...+..+|...|.+++|+ |+.|+++++++|++|++.++
T Consensus 206 lWd~~~~~~~~~-----------~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~----------------- 255 (588)
T 2j04_A 206 SMTVSASSHQPV-----------SRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNY----------------- 255 (588)
T ss_dssp EECCCSSSSCCC-----------EEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTT-----------------
T ss_pred EEECCCCccccc-----------eeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCC-----------------
Confidence 999987652100 001223567889999999 68999988889999998863
Q ss_pred cccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEe-ecCCCcEEEEeeccCeEEEEecCC--------------
Q 011160 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKG-------------- 374 (492)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~s~~g~~l~sg~~dg~i~iwd~~~-------------- 374 (492)
.......+|... +..+.| -+|++..|++++++|+ ++|....
T Consensus 256 ---------------------~~~~~~~gh~~~--V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d 311 (588)
T 2j04_A 256 ---------------------SISSLKTGSLEN--FHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLE 311 (588)
T ss_dssp ---------------------EEEEEECSCCSC--CCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHH
T ss_pred ---------------------eEEEEEcCCCce--EEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcC
Confidence 221222267766 677763 1788999999999999 8888631
Q ss_pred ---------CeeeEEEecCCceeEEEeecCCCCeEEEeeC
Q 011160 375 ---------GELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 375 ---------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
+..+..+.+ ...|.+++|||||+.+|+++.
T Consensus 312 ~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 312 KKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 111222222 345999999999999998864
No 94
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3e-37 Score=287.52 Aligned_cols=286 Identities=12% Similarity=0.097 Sum_probs=222.8
Q ss_pred CCCCCce-EeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC-CCCEEEEecCCC
Q 011160 6 NNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDR 83 (492)
Q Consensus 6 ~~~~~~~-l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~ 83 (492)
++|+... +++++.||.|+||++....... .....+.+|.+.|++++|+| ++++|++|+.||
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-----------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg 104 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKTGRVD-----------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC 104 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCCEECC-----------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccCCCCC-----------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC
Confidence 3444443 4568899999999986432110 12256789999999999999 999999999999
Q ss_pred eEEEEECCCC-------ceeeeeccCcCcceEEEEecCCCCC-ceEEeecCCCcEEEEecccCCeeeeEEe--ecCCCce
Q 011160 84 RVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLL--GKHQGRA 153 (492)
Q Consensus 84 ~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~v 153 (492)
.|+||++.++ +.+..+ .+|...|.+++|+| ++ .+|++++.||.|++||+.+++.... + ..|...|
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v 179 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLT--LGPDVHPDTI 179 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEE--ECTTTCCSCE
T ss_pred eEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEE--EecCCCCCce
Confidence 9999999987 445555 78999999999999 87 6999999999999999998876654 5 7899999
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcccee-ecCCCCCCCcceeecceEEEEEcCCCCceEEEe---cCCCeEE
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA---GSDEYTR 229 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~v~ 229 (492)
++++|+|++ .+|++++.||.|++||+++++.+..+ ..+ ....+.+++|+|+ +.+|++| +.++.|+
T Consensus 180 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 180 YSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPH---------EGTRPVHAVFVSE-GKILTTGFSRMSERQVA 248 (402)
T ss_dssp EEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSS---------CSSSCCEEEECST-TEEEEEEECTTCCEEEE
T ss_pred EEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCC---------CCCcceEEEEcCC-CcEEEEeccCCCCceEE
Confidence 999999998 57899999999999999998877665 221 1123788999997 7888888 7899999
Q ss_pred EEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccc
Q 011160 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (492)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (492)
+||+++.+.. +.. ..
T Consensus 249 iwd~~~~~~~------------------------~~~--------------------~~--------------------- 263 (402)
T 2aq5_A 249 LWDTKHLEEP------------------------LSL--------------------QE--------------------- 263 (402)
T ss_dssp EEETTBCSSC------------------------SEE--------------------EE---------------------
T ss_pred EEcCccccCC------------------------ceE--------------------Ee---------------------
Confidence 9998764310 000 00
Q ss_pred cccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEE-EeeccCeEEEEecCCCee-eEEEec--CC
Q 011160 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGEL-IRVIEA--DR 385 (492)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~-sg~~dg~i~iwd~~~~~~-~~~~~~--h~ 385 (492)
..|... +.+++| +|++++|+ +|+.||.|++|++.+++. +..+.. |.
T Consensus 264 ---------------------------~~~~~~--v~~~~~-s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~ 313 (402)
T 2aq5_A 264 ---------------------------LDTSSG--VLLPFF-DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK 313 (402)
T ss_dssp ---------------------------CCCCSS--CEEEEE-ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS
T ss_pred ---------------------------ccCCCc--eeEEEE-cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccC
Confidence 011122 677888 99999986 566799999999998874 455544 45
Q ss_pred ceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCc
Q 011160 386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
..|.+++|+|++.++++ .++.+++|++.+++...
T Consensus 314 ~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~ 347 (402)
T 2aq5_A 314 ESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCEP 347 (402)
T ss_dssp SCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEEE
T ss_pred CcccceEEeccccccee--cceeEEEEEcCCCcEEE
Confidence 88999999999998875 46699999998865543
No 95
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=294.37 Aligned_cols=283 Identities=9% Similarity=0.037 Sum_probs=205.1
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
+.+||+++.||+|+|||+.+++...... .........+.+|.+.|++++|+|++ .|++|+.||+|++||
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~----------~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD 293 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVF----------KMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFD 293 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEE----------ECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccc----------eeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEE
Confidence 6799999999999999998764321000 00002235678999999999999864 899999999999999
Q ss_pred CCCCceeeeeccCcCcceEEE--EecCCCCC-ceEEeecCCCcEEEEecccCCeeeeEEeecCCC--ceEEEEEcCCCCc
Q 011160 90 WKTERVKLSFHSGHNDNVFQA--KIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQG--RAHKLAIEPGSPH 164 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~ 164 (492)
+.++......+.+|...|.++ +|+| ++ .+|++|+.|++|+|||+++++.... +.+|.. .|.+++|+|++ .
T Consensus 294 ~~~~~~~~~~~~~H~~~V~sv~~~~s~--~g~~~laS~S~D~tvklWD~~~~~~~~~--~~~~~~~~~v~~v~fsp~~-~ 368 (524)
T 2j04_B 294 LTDPEVPSFYDQVHDSYILSVSTAYSD--FEDTVVSTVAVDGYFYIFNPKDIATTKT--TVSRFRGSNLVPVVYCPQI-Y 368 (524)
T ss_dssp TTBCSSCSEEEECSSSCEEEEEEECCT--TSCCEEEEEETTSEEEEECGGGHHHHCE--EEEECSCCSCCCEEEETTT-T
T ss_pred CCCCCCceEEeecccccEEEEEEEcCC--CCCeEEEEeccCCeEEEEECCCCCcccc--cccccccCcccceEeCCCc-C
Confidence 997754444347899999999 5677 77 8999999999999999988766544 445543 58899999998 4
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
.|++++.|++|++||++++.....+.. |...|++++|+|+ +.+|++|+.||+|++||+....+ ..
T Consensus 369 ~l~s~~~d~tv~lwd~~~~~~~~~l~g----------H~~~V~sva~Sp~-g~~l~Sgs~Dgtv~lwd~~~~~~-~~--- 433 (524)
T 2j04_B 369 SYIYSDGASSLRAVPSRAAFAVHPLVS----------RETTITAIGVSRL-HPMVLAGSADGSLIITNAARRLL-HG--- 433 (524)
T ss_dssp EEEEECSSSEEEEEETTCTTCCEEEEE----------CSSCEEEEECCSS-CCBCEEEETTTEEECCBSCSSTT-TC---
T ss_pred eEEEeCCCCcEEEEECcccccceeeec----------CCCceEEEEeCCC-CCeEEEEECCCEEEEEechHhhc-cc---
Confidence 789999999999999999887665543 5668999999998 68999999999999999865311 00
Q ss_pred CCCccccCCCCc-CCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 245 GQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
.... ...+...+.+++|+|+++.+.. .+...+|....
T Consensus 434 --------~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~-------------------------------- 471 (524)
T 2j04_B 434 --------IKNSSATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTV-------------------------------- 471 (524)
T ss_dssp --------C------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-----------------------------------
T ss_pred --------cccCccceeeeEEEEeccCCCCCeEEc--cCCceeccccc--------------------------------
Confidence 0000 0011235789999999885432 22222222210
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCc---EEEEeeccCeEEEEecC
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE---YVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~---~l~sg~~dg~i~iwd~~ 373 (492)
....+..+.+|... |.+++| +|++. ++|+|+.+|.|+||++.
T Consensus 472 -----~g~~~~~l~gh~~~--V~~Vaf-sp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 472 -----NDVSKAKIDAHGIN--ITCTKW-NETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ---------------CCCS--CCCEEE-CCSTTTTTEEEEECTTSEEEEEECS
T ss_pred -----CCcceeeecCCCce--EEEEEC-CCCCCccHHHHhhccCceEEEEEcc
Confidence 02355677888876 999999 99964 99999999999999984
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=287.62 Aligned_cols=330 Identities=10% Similarity=0.146 Sum_probs=222.0
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCcc------------ceEEEEEEc
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR------------GCVNTVSFN 70 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~s 70 (492)
.+.|+|++++||+|+.||.|+||++.+++... ......+.+...+.+|. +.|++++|+
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~----------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQ----------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC---------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCC----------cccccceeEecccccccccccccccccccCceEEEEEc
Confidence 45789999999999999999999999766320 00111234557888998 889999999
Q ss_pred CCC--CEEEEecCCCeEEEEECCCCcee---------------------------------------eeeccCcCcceEE
Q 011160 71 TDG--DILISGSDDRRVILWDWKTERVK---------------------------------------LSFHSGHNDNVFQ 109 (492)
Q Consensus 71 ~~~--~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~ 109 (492)
|++ .+|++++.|++|++|++.++... ..+..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 89999999999999998764431 1334689999999
Q ss_pred EEecCCCCCceEEeecCCCcEEEEecccCCeeeeE------EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 011160 110 AKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK------LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (492)
Q Consensus 110 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~------~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (492)
++|+| ++++|++| .|+.|++||+......... .+.+|...|++++|+|+++.+|++++.||.|++||++++
T Consensus 183 ~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 183 ISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 99999 99999998 7999999999844332211 256899999999999998668999999999999999998
Q ss_pred Cc----cceeecCCCCCCC--cceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCc
Q 011160 184 AA----TELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNL 256 (492)
Q Consensus 184 ~~----~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~ 256 (492)
+. ...+..+...... ...+...|.+++|+|+ +.+|++++. +.|++||+++ ++....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~--------------- 322 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVET--------------- 322 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCC---------------
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccce---------------
Confidence 86 4444332110000 0001137999999998 789999988 9999999987 443222
Q ss_pred CCCccc---------------ceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 011160 257 IGDEQV---------------GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (492)
Q Consensus 257 ~~~~~~---------------~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492)
...|.. .+..++|+|++++|++++ ++.|++||+.++..... ......... ....+ ...+.
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~ 398 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKP--RTVLK-PRKVC 398 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCT--TCBCC-CCCEE
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eeccccccc--ccccC-Ccccc
Confidence 111211 134599999999999988 66899999988643211 000000000 00000 00000
Q ss_pred CCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEec
Q 011160 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (492)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~ 372 (492)
..... ...............|..++| +|++.+||+++.++ +++|..
T Consensus 399 ~~~~~----~~~~~~~~~~~~~~~i~~~~~-~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 399 ASGKR----KKDEISVDSLDFNKKILHTAW-HPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CSSCC----CTTCEEGGGCCTTSCCCEEEE-CSSSSEEEEECSSC-EEEEEC
T ss_pred ccCCc----ccccccccccccCCceeEEEE-CCCCCEEEEEecce-eeeecc
Confidence 00000 000000111111123788998 99999999998776 777764
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.6e-37 Score=275.91 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=165.0
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC--CCCEEEEec
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGS 80 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~ 80 (492)
++.|+|++++||+|+.|++|+|||+.+++.. +...+.+|.+.|++++|+| ++++|++|+
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-------------------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s 78 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-------------------LIADLRGHEGPVWQVAWAHPMYGNILASCS 78 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETTEEE-------------------EEEEEECCSSCEEEEEECCGGGSSCEEEEE
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-------------------EEEEEcCCCccEEEEEeCCCCCCCEEEEEE
Confidence 4678899999999999999999999876432 2367889999999999986 489999999
Q ss_pred CCCeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee-eeEEeecCCCceEEEE
Q 011160 81 DDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLA 157 (492)
Q Consensus 81 ~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~v~~i~ 157 (492)
.|++|++||+.++. ....+ .+|...|.+++|+|..++.+|++|+.|+.|++|++..+... ....+.+|...|.+++
T Consensus 79 ~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 79 YDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp TTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred CCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 99999999998874 34444 68999999999999212789999999999999999876432 2234678999999999
Q ss_pred EcCCC----------------CcEEEEEcCCCcEEEEeCCCCC---ccceeecCCCCCCCcceeecceEEEEEcCCC---
Q 011160 158 IEPGS----------------PHVFYTCGEDGLVQHFDLRTGA---ATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--- 215 (492)
Q Consensus 158 ~~~~~----------------~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--- 215 (492)
|+|+. ..+|++|+.|+.|++||++... ....+.. |...|.+++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~----------h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA----------HSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC----------CSSCEEEEECCCCSSCS
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc----------CCCceEEEEecCCCCCC
Confidence 99973 1478999999999999997553 2222221 55689999999973
Q ss_pred CceEEEecCCCeEEEEeccc
Q 011160 216 ANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~ 235 (492)
+.+|++++.|++|++|++..
T Consensus 228 ~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCEEEEEETTCEEEEEECSS
T ss_pred CceEEEEcCCCeEEEEEccC
Confidence 27899999999999999865
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-37 Score=289.75 Aligned_cols=330 Identities=11% Similarity=0.147 Sum_probs=224.6
Q ss_pred CCCCCC-CCceEeeccCcceEEEEeecc---CcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE
Q 011160 3 DASNNN-NNKRARTSVDKALVDVWLREL---GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (492)
Q Consensus 3 ~~~~~~-~~~~l~t~~~dg~v~~w~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (492)
.+.|+| ++++|++|+.||+|+|||+.+ +... .....+ +|.+.|++++|+|++++|++
T Consensus 68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~------------------~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY------------------SSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC------------------SCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCCEEEEecCCceEEEeECcccccCccc------------------ceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 356788 999999999999999999986 3311 111222 48999999999999999999
Q ss_pred ecCCCeEEEEECC---CCceeeeec---------cC--cCcceEEEE--ecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 79 GSDDRRVILWDWK---TERVKLSFH---------SG--HNDNVFQAK--IMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 79 ~~~d~~i~iwd~~---~~~~~~~~~---------~~--~~~~v~~~~--~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
|+.||.|++||+. +++...... .. +...+.++. ++| ++.+|++++.||.|++||+.+++.+.
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE--EKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS--SCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 9999999999994 454433220 11 455666776 446 89999999999999999999888776
Q ss_pred eEEeec--CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC---CCc
Q 011160 143 TKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NAN 217 (492)
Q Consensus 143 ~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~ 217 (492)
. +.. |...|++++|+|++ .+|++|+.||.|++||+++++.+..+... +...|.+++|+|. ++.
T Consensus 207 ~--~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 207 I--IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFG---------DHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp E--EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCT---------TCEEEEEEEECTTTCTTEE
T ss_pred E--EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecC---------CCCceEEEEeccccCCCcc
Confidence 5 555 88999999999998 68999999999999999998877765421 4457999966653 267
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCC---CccccCCCC------cCC--CcccceEEEEEcCCCCeeEeec-CCcEE
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQ---PADYFCPPN------LIG--DEQVGITGLAFSDQSELLVSYN-DEFIY 285 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~~~~~~~------~~~--~~~~~i~~~~~s~~~~~l~~~~-~~~i~ 285 (492)
+|++++.||.|++||+++++....+.-.. ....+.+.. ... .|...|.+++|+ ++++|++++ ++.|+
T Consensus 275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 99999999999999999876443321100 000001100 112 277889999999 778888888 77999
Q ss_pred EEecCCCCCCCCCCCCCCCcccc-ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC--CcEEEEee
Q 011160 286 LFTQDMGLGPNPPPSSPVSTRSE-ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--CEYVVSGS 362 (492)
Q Consensus 286 ~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~--g~~l~sg~ 362 (492)
+||+.++.....+..+....... .....+....+... ..............|... |++++| +++ +.+|++|+
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~--I~~i~~-~~~~~~~~l~s~~ 428 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--MKRTSTHSVDDSLYHHDI--INSIST-CEVDETPLLVACD 428 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--CC-------------CCC--EEEEEE-EESSSSEEEEEEE
T ss_pred EEECCCcccceEEecccccCceEEEEEeecceEEEEEe--cccccccccCcccccccc--eeeEee-eccCCceEEEEEc
Confidence 99998875444332211110000 00000000000000 000011122334457776 889998 777 88999999
Q ss_pred ccCeEEEEe
Q 011160 363 DCGRIFIWK 371 (492)
Q Consensus 363 ~dg~i~iwd 371 (492)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-36 Score=283.25 Aligned_cols=293 Identities=17% Similarity=0.253 Sum_probs=224.9
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeE
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (492)
...+++++++|+.||.|++||..+++.. ..+.+|.+.|.+++| ++++|++|+.||.|
T Consensus 139 ~~~d~~~l~~g~~dg~i~iwd~~~~~~~---------------------~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i 195 (435)
T 1p22_A 139 LQYDDQKIVSGLRDNTIKIWDKNTLECK---------------------RILTGHTGSVLCLQY--DERVIITGSSDSTV 195 (435)
T ss_dssp EECCSSEEEEEESSSCEEEEESSSCCEE---------------------EEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred EEECCCEEEEEeCCCeEEEEeCCCCeEE---------------------EEEcCCCCcEEEEEE--CCCEEEEEcCCCeE
Confidence 3457899999999999999999988766 778899999999999 78899999999999
Q ss_pred EEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeee-eEEeecCCCceEEEEEcCCCCc
Q 011160 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
++||+.+++.+..+ .+|...|.+++|++ ..|++|+.||.|++||+.++.... ...+.+|...|.+++| ++ .
T Consensus 196 ~vwd~~~~~~~~~~-~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~ 267 (435)
T 1p22_A 196 RVWDVNTGEMLNTL-IHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-K 267 (435)
T ss_dssp EEEESSSCCEEEEE-CCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-T
T ss_pred EEEECCCCcEEEEE-cCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-C
Confidence 99999999988887 78999999999964 589999999999999998876542 2347789999999999 45 5
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
++++++.||.|++||+++++.+..+.. +...+.+++|+ +.++++|+.||.|++||+++++...
T Consensus 268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~----------~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~---- 330 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTSTCEFVRTLNG----------HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLR---- 330 (435)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEE----
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEEcC----------CCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEE----
Confidence 889999999999999999988877764 44578999995 4699999999999999999875332
Q ss_pred CCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
....|...|.+++| ++.+|++++ ++.|++||+.++......
T Consensus 331 -----------~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~------------------------- 372 (435)
T 1p22_A 331 -----------VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAP------------------------- 372 (435)
T ss_dssp -----------EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSC-------------------------
T ss_pred -----------EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccc-------------------------
Confidence 23457788999999 778888888 678999999764321110
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeec
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 394 (492)
........+.+|... |.+++| ++++|++|+.||.|++||+.+......... ..+..++.|.
T Consensus 373 ----~~~~~~~~~~~h~~~--v~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~ 433 (435)
T 1p22_A 373 ----AGTLCLRTLVEHSGR--VFRLQF---DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTYI 433 (435)
T ss_dssp ----TTTTEEEEECCCSSC--CCCEEE---CSSCEEECCSSSEEEEEC-----------------------
T ss_pred ----ccchheeeccCCCCC--eEEEEe---CCCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCccceeee
Confidence 001245667788876 888887 678999999999999999987765544332 2344555554
No 100
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.2e-34 Score=269.33 Aligned_cols=313 Identities=11% Similarity=0.093 Sum_probs=241.3
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEE-EEecCCCeEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILW 88 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iw 88 (492)
+.++++++.|+.|++||+.+++++ ..+.+|. .+.+++|+|++++| ++++.|+.|++|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~---------------------~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~ 59 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVT---------------------ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSII 59 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEE---------------------EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEE---------------------EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEE
Confidence 346889999999999999988766 5566665 48999999999976 677789999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 167 (492)
|+.+++.+..+ ..+ ..+.+++|+| ++++|+ +++.++.|++||+.+++.... +. +...+.+++|+|++..+++
T Consensus 60 d~~~~~~~~~~-~~~-~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~--~~-~~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 60 DTATNNVIATV-PAG-SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGT--VK-TGKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp ETTTTEEEEEE-ECS-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEE--EE-CSSSEEEEEECTTSSEEEE
T ss_pred ECCCCeEEEEE-ECC-CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEE--Ee-CCCCcceEEECCCCCEEEE
Confidence 99999987777 333 3899999999 998775 455679999999988766544 33 3457899999999965557
Q ss_pred EEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCC
Q 011160 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 247 (492)
+++.++.|++||+++++....+.. ...+.+++|+|++..++++++.++.|++||+++++....
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------ 195 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSV-----------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------ 195 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEEC-----------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------
T ss_pred EeCCCCEEEEEECCCCcEEEEEec-----------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE------
Confidence 888999999999999887766653 235689999998544457888999999999988764321
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeec----CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
. .+...+.+++|+|++++|++++ ++.|++||+.++
T Consensus 196 ---------~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------------------------------- 234 (391)
T 1l0q_A 196 ---------V-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------------------------------- 234 (391)
T ss_dssp ---------E-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-------------------------------
T ss_pred ---------E-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-------------------------------
Confidence 1 1245688999999999888775 468999999763
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCcEE-EEeeccCeEEEEecCCCeeeEEEecCCceeE---EEeecC----
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV-VSGSDCGRIFIWKKKGGELIRVIEADRHVVN---CIEPHP---- 395 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~---~~~~s~---- 395 (492)
..+..+..+.. +.+++| +|+|++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|
T Consensus 235 -------~~~~~~~~~~~---~~~~~~-s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (391)
T 1l0q_A 235 -------KITARIPVGPD---PAGIAV-TPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPV 303 (391)
T ss_dssp -------EEEEEEECCSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCC
T ss_pred -------eEEEEEecCCC---ccEEEE-ccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccc
Confidence 33455555543 678888 9999977 6778899999999999999999887765421 122222
Q ss_pred --------CC----------CeEEEeeCCCCEEEeccCCCCCC
Q 011160 396 --------HS----------TVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 396 --------~~----------~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+. -.+...+.|..+++|++..+...
T Consensus 304 ~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~ 346 (391)
T 1l0q_A 304 YPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS 346 (391)
T ss_dssp CCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE
T ss_pred ccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc
Confidence 11 23666677889999999877543
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-36 Score=280.90 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=201.9
Q ss_pred ecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
++.|.++|++++|+|++++|++|+.|+.|+||++.++ +.+..+ .+|...|.+++|+| ++++|++++.||.|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAP--KSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECT--TTCCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeC--CCCEEEEEeCCCeEEEEE
Confidence 3446789999999999999999999999999999988 555555 78999999999999 999999999999999999
Q ss_pred cccCC-eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc---cceeecCCCCCCCcceeecceEEEE
Q 011160 135 ILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 135 ~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
+.++. ......+..|...|++++|+|++ .+|++++.|+.|++||+++++. ...+... +...|.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~~~v~~~~ 153 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------LRSTILSLD 153 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSS---------CCSCEEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecc---------cCCCeEEEE
Confidence 98876 33334477899999999999998 5789999999999999998874 3333210 455799999
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
|+|+ +.+|++++.|+.|++||++..+....... .+.+..+
T Consensus 154 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~-------------- 193 (377)
T 3dwl_C 154 WHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEA-------------------------SVWGSRL-------------- 193 (377)
T ss_dssp ECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCS-------------------------CSSCSCC--------------
T ss_pred EcCC-CCEEEEEeCCCEEEEEEEEecccCCCccc-------------------------ccccccc--------------
Confidence 9998 78999999999999999976542211000 0000000
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
........+ +|... |.+++| +|++++|++|+.||.|++|
T Consensus 194 -------------------------------------~~~~~~~~~-~~~~~--v~~~~~-sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 194 -------------------------------------PFNTVCAEY-PSGGW--VHAVGF-SPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp -------------------------------------CEEEEEECC-CCSSS--EEEEEE-CTTSSCEEEEETTTEEC-C
T ss_pred -------------------------------------chhhhhhcc-cCCce--EEEEEE-CCCCCEEEEEeCCCcEEEE
Confidence 001222333 56665 899998 9999999999999999999
Q ss_pred ecCCCee----eEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 371 KKKGGEL----IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 371 d~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
|+.+++. +..+.+|...|++++|+|++++|++++.++.+ +|+...
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 233 YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 9999987 78889999999999999999999998766655 666653
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-35 Score=271.55 Aligned_cols=295 Identities=15% Similarity=0.167 Sum_probs=211.2
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC--CCCEEEEec
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGS 80 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~ 80 (492)
.+.|+|++++|++|+.||.|+|||+.++... ......+.+|.+.|++++|+| ++++|++|+
T Consensus 16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-----------------WELSDSWRAHDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECSSSCC-----------------EEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-----------------ceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence 4668899999999999999999999865422 223467889999999999999 699999999
Q ss_pred CCCeEEEEECCCC---------ceeeeeccCcCcceEEEEecCCCC--CceEEeecCCCcEEEEecccCCeeeeEE----
Q 011160 81 DDRRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKL---- 145 (492)
Q Consensus 81 ~d~~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~---- 145 (492)
.||.|++||+.++ +.+..+ .+|...|.+++|+| + +.+|++++.||.|++||+.++.......
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 155 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAP--AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 155 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE
T ss_pred CCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcC--CCCCcEEEEecCCCcEEEecCCChHHhcccccccc
Confidence 9999999999877 334444 68999999999999 8 9999999999999999998776533211
Q ss_pred -------eecCCCceEEEEEcCC--CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 146 -------LGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 146 -------~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
...|...+.+++|+|+ .+.++++++.++.+.+|+...+......... + +...|.+++|+|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~--h~~~i~~~~~~p~~~ 227 (351)
T 3f3f_A 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP------G--HKSLIRSISWAPSIG 227 (351)
T ss_dssp EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC------C--CCSCEEEEEECCCSS
T ss_pred ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC------C--CCcceeEEEECCCCC
Confidence 1257789999999997 2368999999999988888777653222211 1 556899999999842
Q ss_pred ---ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-----CcEEEEe
Q 011160 217 ---NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----EFIYLFT 288 (492)
Q Consensus 217 ---~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----~~i~~~d 288 (492)
.+|++++.||.|++||++.+..... .............++....++.+.. ..+.+|+
T Consensus 228 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 228 RWYQLIATGCKDGRIRIFKITEKLSPLA---------------SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp CSSEEEEEEETTSCEEEEEEEECC------------------------------------------------------CC
T ss_pred CcceEEEEEcCCCeEEEEeCCCCcCccc---------------cCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 7999999999999999987642111 1111222333333333333333331 1233333
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
... ...+..+.+|... |.+++| +|++++|++|+.||.|+
T Consensus 293 ~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~~~dg~v~ 331 (351)
T 3f3f_A 293 NLQ--------------------------------------VELLSEHDDHNGE--VWSVSW-NLTGTILSSAGDDGKVR 331 (351)
T ss_dssp SEE--------------------------------------EEEEEEECTTSSC--EEEEEE-CSSSCCEEEEETTSCEE
T ss_pred ccc--------------------------------------ccEEEEEeccccc--EEEEEE-cCCCCEEEEecCCCcEE
Confidence 222 3456677888876 999999 99999999999999999
Q ss_pred EEecCCCeeeEEE
Q 011160 369 IWKKKGGELIRVI 381 (492)
Q Consensus 369 iwd~~~~~~~~~~ 381 (492)
||++.+++.+..+
T Consensus 332 iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 332 LWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEecCcCcchhhe
Confidence 9999987655443
No 103
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6e-35 Score=266.38 Aligned_cols=294 Identities=11% Similarity=0.071 Sum_probs=210.9
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceE-EeecCCCcEEEE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHA 133 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw 133 (492)
..+.+|.+.|++++|+|||++|++|+.++ ++||++.+++..... +...+..+++.+ +++.+ ++++.|+.|++|
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLH--RTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECT--TSSEEEEECSSTTEEEEE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcC--CCCEEEEEECCccEEEEE
Confidence 45688999999999999999999998775 789999877665443 222577888888 77766 567788999999
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-CccceeecCCCCCCCcceeecceEEEEEc
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAID 212 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (492)
|+.+++.+.. +. +...|.+++++++. ++++ .++.|++||+.++ +.+..+. . ....++++
T Consensus 87 d~~~~~~~~~--~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~-----------~--~~~~~~~s 146 (355)
T 3vu4_A 87 DDVKKQDVSR--IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDI-----------R--FGGVCEFS 146 (355)
T ss_dssp ETTTTEEEEE--EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCE-----------E--EEEEEEEE
T ss_pred ECCCCcEEEE--EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEec-----------c--CCceEEEE
Confidence 9998877664 43 66799999999864 3333 4789999999988 6655543 1 33455666
Q ss_pred CCCCceEEE--ecCCCeEEEEecccccccCCCCCCCCccccCC-CCcCCCcccceEEEEEcCCCCeeEeec-CCc-EEEE
Q 011160 213 PRNANLFAV--AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYLF 287 (492)
Q Consensus 213 p~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~-i~~~ 287 (492)
+ .++++ |+.+|.|++||+++++...............+ .....+|...|.+++|+|++++|++++ +++ |++|
T Consensus 147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp T---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred c---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 6 24544 68999999999987542111000000000011 344567899999999999999999999 667 9999
Q ss_pred ecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee-c-cccceeeeeEEeecCCCcEEEEeeccC
Q 011160 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-G-HRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
|+.++ ..+..+. + |... |.+++| +|+|++|++++.|+
T Consensus 224 d~~~~--------------------------------------~~~~~~~~g~h~~~--v~~~~~-s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 224 KTEDG--------------------------------------VLVREFRRGLDRAD--VVDMKW-STDGSKLAVVSDKW 262 (355)
T ss_dssp ETTTC--------------------------------------CEEEEEECTTCCSC--EEEEEE-CTTSCEEEEEETTC
T ss_pred ECCCC--------------------------------------cEEEEEEcCCCCCc--EEEEEE-CCCCCEEEEEECCC
Confidence 99873 4556666 4 7765 999999 99999999999999
Q ss_pred eEEEEecCCCeee--EEEe---------------------cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 366 RIFIWKKKGGELI--RVIE---------------------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 366 ~i~iwd~~~~~~~--~~~~---------------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+|+|||+..+... ..+. .+......++|++++++|++++.||.+++|++..++
T Consensus 263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999765321 1111 111224678999999999999999999999997654
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.6e-34 Score=272.28 Aligned_cols=286 Identities=11% Similarity=0.073 Sum_probs=228.2
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee----ccCcCcceEEEEecCCCCCceEEeecCCCcE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 130 (492)
..+..+. .+.+++|+|++.++++++.++.|++||+.+++....+ ..+|...|.+++|+| ++.++++++.|+.|
T Consensus 117 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v 193 (433)
T 3bws_A 117 SRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAV 193 (433)
T ss_dssp EEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEE
T ss_pred EEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEE
Confidence 4444443 4559999998888889999999999999998876532 247888999999999 99999999999999
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
++||+.+++.... +..|...+.+++|+|++..++++++.++.|++||+++++....+. ....+.+++
T Consensus 194 ~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~~~~~~ 260 (433)
T 3bws_A 194 HVFDLKTLAYKAT--VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-----------KIGLPRGLL 260 (433)
T ss_dssp EEEETTTCCEEEE--EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-----------CCSEEEEEE
T ss_pred EEEECCCceEEEE--EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-----------CCCCceEEE
Confidence 9999988776654 667889999999999996555677789999999999887766554 223589999
Q ss_pred EcCCCCceEEEec--------CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCee-Eeec-
Q 011160 211 IDPRNANLFAVAG--------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN- 280 (492)
Q Consensus 211 ~~p~~~~~l~~~~--------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~- 280 (492)
|+|+ +..+++++ .|+.|++||+++++.... ..+...+.+++|+|+++.+ ++++
T Consensus 261 ~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 261 LSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT----------------IGPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp ECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE----------------EEEEECEEEEEECSSTTEEEEEETT
T ss_pred EcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEee----------------ccCCCCcceEEECCCCCEEEEEecC
Confidence 9998 66777776 588999999987753221 1234578899999999755 4444
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE
Q 011160 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (492)
Q Consensus 281 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s 360 (492)
++.|++||+.++ .....+. +... +.+++| +|+|++|++
T Consensus 324 ~~~v~v~d~~~~--------------------------------------~~~~~~~-~~~~--~~~~~~-s~dg~~l~~ 361 (433)
T 3bws_A 324 CSKIEVYDLKEK--------------------------------------KVQKSIP-VFDK--PNTIAL-SPDGKYLYV 361 (433)
T ss_dssp TTEEEEEETTTT--------------------------------------EEEEEEE-CSSS--EEEEEE-CTTSSEEEE
T ss_pred CCEEEEEECCCC--------------------------------------cEEEEec-CCCC--CCeEEE-cCCCCEEEE
Confidence 668999999863 2233333 2232 788998 999999888
Q ss_pred eec---------------cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeC-CCCEEEeccCC
Q 011160 361 GSD---------------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI-ESDIKILTPNA 416 (492)
Q Consensus 361 g~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 416 (492)
++. ||.|++||+.+++.+..+..+ ..+.+++|+|++++|++++. |+.|++|+++.
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 776 579999999999999988864 56899999999999988775 99999999864
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8.6e-35 Score=272.88 Aligned_cols=260 Identities=15% Similarity=0.229 Sum_probs=208.9
Q ss_pred cCcCcceEEEEecCCCC-CceEEeecCCCcEEEEecccC--------CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC
Q 011160 101 SGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILER--------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (492)
Q Consensus 101 ~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 171 (492)
..|.+.|++++|+| + +.+|++++.+|.|++|++... .......+.+|...|++++|+|+++.+|++|+.
T Consensus 125 ~~h~~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 125 INHEGEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEESSCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EcCCCcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 57999999999999 7 678999999999999999862 123334478899999999999998658999999
Q ss_pred CCcEEEEeCCCCCccce-eecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccc
Q 011160 172 DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (492)
Q Consensus 172 dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 250 (492)
||.|++|++.++..... +.... ... .+...|.+++|+|+++.+|++++.||.|++||+++.....
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~--~~~--~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~---------- 268 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKN--IFT--GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---------- 268 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSE--EEC--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS----------
T ss_pred CCeEEEEeCCCCCCCCceeccce--eec--CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc----------
Confidence 99999999998543211 11000 000 1556799999999668899999999999999999763110
Q ss_pred cCCCCcCCCcccceEEEEEcCCCC-eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCc
Q 011160 251 FCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (492)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (492)
+......|...|++++|+|++. +|++++ ++.|++||++..
T Consensus 269 --~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~------------------------------------ 310 (430)
T 2xyi_A 269 --PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL------------------------------------ 310 (430)
T ss_dssp --CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT------------------------------------
T ss_pred --ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC------------------------------------
Confidence 1222345778999999999987 577777 678999999863
Q ss_pred cccCCceeeccccceeeeeEEeecCCCc-EEEEeeccCeEEEEecCC--------------CeeeEEEecCCceeEEEee
Q 011160 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKG--------------GELIRVIEADRHVVNCIEP 393 (492)
Q Consensus 329 ~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~ 393 (492)
...+..+.+|... |.+++| +|+++ +|++++.||.|+|||+.. .+++..+.+|...|++++|
T Consensus 311 -~~~~~~~~~h~~~--v~~i~~-sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 311 -KLKLHSFESHKDE--IFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp -TSCSEEEECCSSC--EEEEEE-CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred -CCCeEEeecCCCC--EEEEEE-CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 2456777888776 899999 99985 799999999999999976 3677788899999999999
Q ss_pred cCCCC-eEEEeeCCCCEEEeccCCCC
Q 011160 394 HPHST-VLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 394 s~~~~-~l~s~~~dg~i~iw~~~~~~ 418 (492)
+|+++ +|++++.||.|+||++....
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCCCCCEEEEEECCCCEEEeEccccc
Confidence 99999 89999999999999997653
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=297.48 Aligned_cols=259 Identities=16% Similarity=0.273 Sum_probs=207.4
Q ss_pred EeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCC--CceeeeeccCcCcceEEEEecCCCC--CceEEeecCCCcE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQV 130 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~v 130 (492)
..+.+|.+.|++++|+|++++|++|+.||.|+||++.+ +.....+ .+|...|++++|+| + +++|++|+.||.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAH--PKFGTILASCSYDGKV 79 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--TTSCSEEEEEETTSCE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecC--CCCCCEEEEEeCCCeE
Confidence 56789999999999999999999999999999999974 4455555 78999999999998 6 9999999999999
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCC--CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
++||+.++.......+..|...|++++|+|+ + .++++++.||.|++||++++.......... +...|.+
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~--------~~~~v~~ 150 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVNS 150 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEEC--------CSSCEEE
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeec--------CCCceEE
Confidence 9999998775455557889999999999999 7 689999999999999999885443332211 5567999
Q ss_pred EEEcCC------------CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCee
Q 011160 209 IAIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (492)
Q Consensus 209 ~~~~p~------------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 276 (492)
++|+|. ++.++++|+.||.|++||++++...
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~------------------------------------- 193 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------------- 193 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-------------------------------------
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-------------------------------------
Confidence 999994 2567777777777777777543200
Q ss_pred EeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC--
Q 011160 277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-- 354 (492)
Q Consensus 277 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~-- 354 (492)
......+.+|... |.+++| +|+
T Consensus 194 -----------------------------------------------------~~~~~~~~~h~~~--V~~l~~-sp~~~ 217 (753)
T 3jro_A 194 -----------------------------------------------------YVLESTLEGHSDW--VRDVAW-SPTVL 217 (753)
T ss_dssp -----------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCCCS
T ss_pred -----------------------------------------------------ceeeeeecCCCCc--EEEEEe-ccCCC
Confidence 1122345566665 899998 999
Q ss_pred -CcEEEEeeccCeEEEEecCCCe-----eeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 355 -CEYVVSGSDCGRIFIWKKKGGE-----LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 355 -g~~l~sg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
+++|++|+.||.|++||+.+++ .+.....|.+.|++++|+|++++|++++.||.|++|++..+.
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999999999999999998864 233345688899999999999999999999999999998643
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-35 Score=265.05 Aligned_cols=276 Identities=11% Similarity=0.065 Sum_probs=206.4
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc---------cC
Q 011160 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL---------ER 138 (492)
Q Consensus 68 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~---------~~ 138 (492)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+| . +++++.|++|++|+.. ++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP--A---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC--S---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC--c---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 445677889999999999999998888777663 46778888888 5 8899999999999765 32
Q ss_pred CeeeeEEeecCCCceEEEEEcC--CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 139 GGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
..+.. ....|...|.+++|+| ++ .+|++++.||.|++||+++++........ +...+.+++|+|+ +
T Consensus 115 ~~~~~-~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------~~~~i~~~~~~pd-g 182 (343)
T 3lrv_A 115 KVLRE-IEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAK---------SDVEYSSGVLHKD-S 182 (343)
T ss_dssp CEEEE-EECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCC---------SSCCCCEEEECTT-S
T ss_pred ceeEE-eecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecC---------CCCceEEEEECCC-C
Confidence 22222 2335778999999999 88 58999999999999999998875443221 3346899999998 7
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCC
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~ 296 (492)
.+|++|+.||.|++||+++++... ..+...|...|.+++|+|++.+|++++++.|++||+++.....
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~~-------------~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQAS-------------SRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSCC-------------EECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCB
T ss_pred CEEEEEcCCCEEEEEECCCCCCCc-------------cEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcce
Confidence 899999999999999999876320 1122237889999999999999999998899999998753221
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec-cCeEEEEecCCC
Q 011160 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGG 375 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-dg~i~iwd~~~~ 375 (492)
. +..+..|.....-.+++| +|+|++|++++. |+.|+||++...
T Consensus 250 ~-----------------------------------~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 250 A-----------------------------------YPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp S-----------------------------------SCCCBC-----CCEEEEE-CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred e-----------------------------------ecccccccccccceEEEE-CCCCCEEEEecCCCCcEEEEEEccc
Confidence 1 122222322211135888 999999999988 999999999766
Q ss_pred eeeEEEecCCceeEEEeecC---CCCeEEEeeCCCCEEEeccCC
Q 011160 376 ELIRVIEADRHVVNCIEPHP---HSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~ 416 (492)
...... .++..++|+| +.+.|++++.|+.+.++-...
T Consensus 294 ~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 294 TKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred ccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 544333 5688999999 888999999999999886544
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=270.39 Aligned_cols=310 Identities=10% Similarity=0.078 Sum_probs=222.6
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeec-------------------------------------
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH------------------------------------- 100 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~------------------------------------- 100 (492)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578899999999977666 46899999999888 544431
Q ss_pred ----------------cCcCcceEEEEecCCCCCceE-EeecCCCcEEEEecc--cCCeeeeEEeecCCCceEEEEEcCC
Q 011160 101 ----------------SGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQIL--ERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 101 ----------------~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
.+|...|.+++|+| ++++| ++++.||.|++|++. ++..........|...|++++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 12344799999999 99996 899999999999998 6666655323367789999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccc----eeecCCCCCCCcceeecceEEEEEcCC--CCceEEEecCCCeEEEEeccc
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~i~d~~~ 235 (492)
+ .+|++++.+|.|++|++.++.... .+.. +...|.+++|+|+ ++.+|++++.|+.|++||+++
T Consensus 161 ~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 161 D-TTVIIADKFGDVYSIDINSIPEEKFTQEPILG----------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp S-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEE----------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred C-CEEEEEeCCCcEEEEecCCcccccccceeeec----------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 9 588999999999999998877553 2221 5568999999996 257999999999999999987
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
++.. .....+|...|.+++|+ ++++|++++ ++.|++||+.++.....+...... .. .....
T Consensus 230 ~~~~--------------~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~--~~~~~ 291 (450)
T 2vdu_B 230 CFIV--------------DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI-KP--YLNDQ 291 (450)
T ss_dssp TTCE--------------EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH-GG--GCCTT
T ss_pred Ccee--------------eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh-hh--hhhhc
Confidence 6532 12244578899999999 999999988 668999999886432221100000 00 00000
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee-ccCeEEEEec--CCC---eeeEEEecCCcee
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGG---ELIRVIEADRHVV 388 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v 388 (492)
..... ..... ........|.++.| +|++++|++++ .++.|+||++ .++ +.+..+..| +.|
T Consensus 292 ---------~~~~~-~~~~~--~~~~~~~~v~~i~~-~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 292 ---------HLAPP-RFQNE--NNDIIEFAVSKIIK-SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp ---------SBC-------------CBCCCEEEEEE-CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred ---------ccccc-ccccc--ccccceEEEEEEEE-eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 00000 00000 00011123788998 99999999998 8999999999 666 777888888 789
Q ss_pred EEEeecCCCCeEEEeeC------CCCEEEeccCC
Q 011160 389 NCIEPHPHSTVLASSGI------ESDIKILTPNA 416 (492)
Q Consensus 389 ~~~~~s~~~~~l~s~~~------dg~i~iw~~~~ 416 (492)
.+++|+|++.++++++. +..|.+|.+..
T Consensus 358 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 358 ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999996544444443 45689998754
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.2e-35 Score=265.22 Aligned_cols=282 Identities=9% Similarity=0.020 Sum_probs=218.9
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCC-EEEEecC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGSD 81 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~ 81 (492)
.+.|+|++++|++++.||.|+||++.+++.. .....+.+|...|++++|+|+++ +|++|+.
T Consensus 16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc------------------ccceeeeecCCceEEEEECCCCCcEEEEEcC
Confidence 3567899999999999999999999976511 01134458999999999999999 9999999
Q ss_pred CCeEEEEEC-CCCceeeeeccC--cCcceEEEEecCCCCCceEEeecCCCcEEEEeccc---------CCeeeeEEeecC
Q 011160 82 DRRVILWDW-KTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE---------RGGVETKLLGKH 149 (492)
Q Consensus 82 d~~i~iwd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~---------~~~~~~~~~~~~ 149 (492)
||.|++|++ .++.. ..+ .+ |...|.+++|+| +.+|++++.|+.|++||+.+ ...+.. +. |
T Consensus 78 dg~i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~-~ 149 (342)
T 1yfq_A 78 QGEILKVDLIGSPSF-QAL-TNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TK-V 149 (342)
T ss_dssp TSCEEEECSSSSSSE-EEC-BSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SS-S
T ss_pred CCeEEEEEeccCCce-Eec-cccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeE--Ee-e
Confidence 999999999 87765 444 67 999999999997 77899999999999999987 554443 44 8
Q ss_pred CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcC-CCCceEEEecCCCe
Q 011160 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSDEY 227 (492)
Q Consensus 150 ~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~ 227 (492)
...|.+++|+|++ +++++.++.|++||+++ +.......... +...+.+++|+| + +.++++++.+|.
T Consensus 150 ~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~i~~i~~~~~~-~~~l~~~~~dg~ 217 (342)
T 1yfq_A 150 KNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESG--------LKYQIRDVALLPKE-QEGYACSSIDGR 217 (342)
T ss_dssp CCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECS--------CSSCEEEEEECSGG-GCEEEEEETTSE
T ss_pred CCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecC--------CCCceeEEEECCCC-CCEEEEEecCCc
Confidence 8999999999875 89999999999999998 55432221111 445799999999 8 689999999999
Q ss_pred EEEEecccc------cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCC
Q 011160 228 TRLYDIRKY------KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 228 v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~ 300 (492)
|++|++... +....+.. .........|...|.+++|+|++++|++++ ++.|++||+.++
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------- 283 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRC------HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------- 283 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEEC------CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------
T ss_pred EEEEEEcCCCcccccccceeeec------ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH--------
Confidence 999999875 21111000 000000112345899999999999999988 668999999873
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc-ccceeeeeEEeecCCCcEEEEeeccCe-EEEEe
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWK 371 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~s~~g~~l~sg~~dg~-i~iwd 371 (492)
..+..+.+| ... |.+++ |++++|++|+.||. .+.|.
T Consensus 284 ------------------------------~~~~~~~~~h~~~--v~~~~---~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 284 ------------------------------KKIKNFAKFNEDS--VVKIA---CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ------------------------------EEEEECCCCSSSE--EEEEE---ECSSEEEEEEECTHHHHCSS
T ss_pred ------------------------------hHhhhhhcccCCC--ceEec---CCCCeEEEEecCCccccccc
Confidence 445667777 665 77776 89999999999998 55444
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=272.42 Aligned_cols=280 Identities=13% Similarity=0.107 Sum_probs=208.5
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 139 (492)
-...|.+++|+|||+++||++.|++|+ |...++ .+ .+|...|++++|+| +| .++.+.+|+. +
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-~gh~~~v~~V~FsP--dg-------~~~~~~~~~~---~ 75 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-NCNSKNLFHVKEFP--LE-------FENKLDFELA---Q 75 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-SSBGGGTEEEEEEC--CC-------CCCTTTTSCC---C
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-cCCCccEEEEEECC--CC-------CcceEEEEeC---C
Confidence 457899999999999999999999999 654443 33 69999999999999 87 4555555553 3
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (492)
......+ .|...|.+++|+|+| ..|++++.||.|++||.++ .+..+. +.. ......+.+++|+|+ +++|
T Consensus 76 ~~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~-----~~~~~sv~svafSPD-G~~L 144 (588)
T 2j04_A 76 QNGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKG-----NLSSRTYHCFEWNPI-ESSI 144 (588)
T ss_dssp SSCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSS-----CSTTTCEEEEEECSS-SSCE
T ss_pred CceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCC-----ccccccEEEEEEcCC-CCEE
Confidence 2222112 458899999999999 5889999999999999544 333332 111 001235899999998 7999
Q ss_pred EEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~ 299 (492)
++|+.||+|++||+..+..... .+ ...........+|...|.+++|+|+| +++++.|+.+++|++..+..
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~-~~---i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~----- 214 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTP-EF---YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH----- 214 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCC-CC---EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS-----
T ss_pred EEEcCCCEEEEEECCCCccccc-cc---eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc-----
Confidence 9999999999999987642100 00 00000011124577899999999999 66666688999999976421
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCccccCCceee-ccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeee
Q 011160 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (492)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~ 378 (492)
.....++. +|... |.+++| + |++||+++ +++|++||+.+++..
T Consensus 215 ------------------------------~~~~~tL~~~h~~~--V~svaF-s--g~~LASa~-~~tIkLWd~~~~~~~ 258 (588)
T 2j04_A 215 ------------------------------QPVSRMIQNASRRK--ITDLKI-V--DYKVVLTC-PGYVHKIDLKNYSIS 258 (588)
T ss_dssp ------------------------------CCCEEEEECCCSSC--CCCEEE-E--TTEEEEEC-SSEEEEEETTTTEEE
T ss_pred ------------------------------ccceeeecccccCc--EEEEEE-E--CCEEEEEe-CCeEEEEECCCCeEE
Confidence 01123453 66654 999999 7 68999987 699999999888875
Q ss_pred EEEecCCceeEEEee--cCCCCeEEEeeCCCCEEEeccC
Q 011160 379 RVIEADRHVVNCIEP--HPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 379 ~~~~~h~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
....+|.+.|..++| +|++..|++++.||+ ++|...
T Consensus 259 ~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 259 SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 444489999999999 999999999999999 999987
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=7.4e-35 Score=269.65 Aligned_cols=276 Identities=13% Similarity=0.026 Sum_probs=184.3
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceee----eeccCcCcceEEEEecCC------CCCceEEeecCCC
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL----SFHSGHNDNVFQAKIMPF------TDDRSIVTCAADG 128 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~~~l~~~~~dg 128 (492)
.|...+....+++++.+|++++.|++|+|||+.+++... ..+.+|.+.|++++|+|. .++++|++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 455555555666678899999999999999998886532 224789999999999872 1678999999999
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCC------------
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD------------ 196 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------ 196 (492)
+|+|||+.++..... +..|...|.+++|+|+++++|++++.|++|++||+++++............
T Consensus 167 tv~~Wd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 167 TLIIWRLTDEGPILA--GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp EEEEEEEETTEEEEE--EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred eEEEEECCCCceeee--ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 999999988766554 677889999999999986789999999999999999887544322111000
Q ss_pred ---CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC
Q 011160 197 ---RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (492)
Q Consensus 197 ---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (492)
.....+...+.++.|++.++..+++++.|+.+++||+..++.... ...+...+..+.+.|+.
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~---------------l~~~~~~~~~~~~~~~~ 309 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE---------------ISDSTMKLGPKNLLPNV 309 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------------------CCSCSE
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce---------------EeeecCccccEEEcccc
Confidence 000114456888888743378999999999999999987653211 12233334444444432
Q ss_pred CeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeec-
Q 011160 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG- 352 (492)
Q Consensus 274 ~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s- 352 (492)
+.+ ..+.. .....++.
T Consensus 310 ~~~------------------------------------------------------------~~~~~---~~~~~~~~~ 326 (393)
T 4gq1_A 310 QGI------------------------------------------------------------SLFPS---LLGACPHPR 326 (393)
T ss_dssp EEE------------------------------------------------------------CSSCC---SSCCEECSS
T ss_pred ccc------------------------------------------------------------cccCc---ceeEEEccC
Confidence 211 11111 22233313
Q ss_pred CCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 353 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
+++.++++|+.||+|+|||+.+++++..+..|..+|++++|+|||++||+++.+| +.+|++.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3556778899999999999999999988889999999999999999999998665 6666553
No 112
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=265.53 Aligned_cols=250 Identities=19% Similarity=0.215 Sum_probs=203.1
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC--CCEEEEec
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISGS 80 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~ 80 (492)
.+.|+|++++|++|+.||.|+||++..+.. .....+.+|.+.|++++|+|+ +++|++|+
T Consensus 16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence 456899999999999999999999983221 123778899999999999987 99999999
Q ss_pred CCCeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCC--CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEE
Q 011160 81 DDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 81 ~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i 156 (492)
.||.|++||+.+++ .+..+ ..|...|.+++|+| + +.+|++++.||.|++||+..........+..|...|.++
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 153 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEE
T ss_pred cCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCC--CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEE
Confidence 99999999999886 44444 67999999999999 8 899999999999999999987665555678899999999
Q ss_pred EEcC-------------CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC--CceEEE
Q 011160 157 AIEP-------------GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAV 221 (492)
Q Consensus 157 ~~~~-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~ 221 (492)
+|+| ++ .+|++++.||.|++||++++.......... .+ |...|.+++|+|++ +.+|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~--h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTL----EG--HSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp EECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEE----CC--CSSCEEEEEECCCCSSSEEEEE
T ss_pred EEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEE----ec--ccCcEeEEEECCCCCCCCeEEE
Confidence 9999 46 689999999999999998876442221100 01 55689999999985 689999
Q ss_pred ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCC
Q 011160 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 222 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~ 291 (492)
++.||.|++||++++..... ........+...|.+++|+|++++|++++ ++.|++|++..
T Consensus 227 ~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 227 VSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EETTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EeCCCEEEEEeCCCCCccce----------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 99999999999987631110 00111233677899999999999999887 67899999985
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=264.01 Aligned_cols=289 Identities=13% Similarity=0.069 Sum_probs=215.3
Q ss_pred CCCCCCC---CceEeeccCcceEEEEeecc-CcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE
Q 011160 3 DASNNNN---NKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (492)
Q Consensus 3 ~~~~~~~---~~~l~t~~~dg~v~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (492)
.+.|+|+ +++|++|+.||.|+|||+.+ ++.+ ...+.+|.+.|++++|+|++++|++
T Consensus 44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--------------------~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--------------------PKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--------------------EEEEEECSSCEEEEEECTTSSEEEE
T ss_pred EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--------------------EEEeccccCCEEEEEECcCCCEEEE
Confidence 3567788 69999999999999999997 3322 2567789999999999999999999
Q ss_pred ecCCCeEEEEECCCCceeeeeccCcCcceEEEEe--cCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEE
Q 011160 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKI--MPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i 156 (492)
++.||.|++||+.+++.+.. .+|...|.+++| +| ++.+|++++.||.|++||+.+++.+.. +..+ ..+.++
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~-~~~~~~ 176 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAP--NYSCVMTGSWDKTLKFWDTRSSNPMMV--LQLP-ERCYCA 176 (368)
T ss_dssp EETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECS--SCEEEEEEETTSEEEEECSSCSSCSEE--EECS-SCEEEE
T ss_pred EcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCC--CCCEEEEccCCCcEEEEECCCCcEEEE--EecC-CCceEE
Confidence 99999999999998887653 479999999999 77 999999999999999999998876655 4444 466677
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC---CceEEEecCCCeEEEEec
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN---ANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~v~i~d~ 233 (492)
.+.+. .+++++.++.+.+|+++............ ....+.++++.+.. ...+++++.||.|++|++
T Consensus 177 ~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 245 (368)
T 3mmy_A 177 DVIYP---MAVVATAERGLIVYQLENQPSEFRRIESP--------LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI 245 (368)
T ss_dssp EEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCS--------CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred EecCC---eeEEEeCCCcEEEEEeccccchhhhcccc--------ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence 77653 57888889999999998765433222111 11234455554431 123999999999999999
Q ss_pred ccccc---cCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccc
Q 011160 234 RKYKW---DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (492)
Q Consensus 234 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (492)
+.... ...... . ...........|...|.+++|+|++++|++++ ++.|++||+.+
T Consensus 246 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~------------------ 304 (368)
T 3mmy_A 246 NPPNPAKDNFTFKC--H-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA------------------ 304 (368)
T ss_dssp SCSCHHHHSEEEEC--S-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT------------------
T ss_pred CCCCccccceeeee--e-ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC------------------
Confidence 87632 100000 0 00000011122334799999999999999988 67899999987
Q ss_pred cccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecC
Q 011160 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (492)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~ 373 (492)
...+..+.+|... |.+++| +|+|++|++|+.|+..+.|++.
T Consensus 305 --------------------~~~~~~~~~~~~~--v~~~~~-s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 305 --------------------RTKLKTSEQLDQP--ISACCF-NHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp --------------------TEEEEECCCCSSC--EEEEEE-CTTSSCEEEEECCCSTTCGGGC
T ss_pred --------------------CcEEEEecCCCCC--ceEEEE-CCCCCeEEEEeccccccccccc
Confidence 3456677778776 899999 9999999999998866655543
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=285.20 Aligned_cols=252 Identities=19% Similarity=0.215 Sum_probs=205.3
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC--CCEEEEec
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISGS 80 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~ 80 (492)
.+.|+|++++|++|+.||.|+|||+..+.. .....+.+|.++|++++|+|+ +++|++|+
T Consensus 14 ~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s 74 (753)
T 3jro_A 14 DAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74 (753)
T ss_dssp EECCCSSSCCEEEEETTTEEEEEEEETTEE-------------------EEEEEECCCSSCEEEEEECCTTSCSEEEEEE
T ss_pred EEEECCCCCeEEEEECCCcEEEEecCCCCC-------------------ccceeccCCcCceEEEEecCCCCCCEEEEEe
Confidence 467899999999999999999999983321 233778899999999999988 99999999
Q ss_pred CCCeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCC--CceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEE
Q 011160 81 DDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 81 ~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i 156 (492)
.||.|++||+.++. .+..+ .+|...|++++|+| + +..+++|+.||.|++||+..+.......+.+|...|.++
T Consensus 75 ~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp--~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 75 YDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp TTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred CCCeEEEEECCCCcccccccc-cCCCCCeEEEEECC--CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence 99999999999886 44444 68999999999999 8 999999999999999999888665555678899999999
Q ss_pred EEcCC-------------CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC--CceEEE
Q 011160 157 AIEPG-------------SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAV 221 (492)
Q Consensus 157 ~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~ 221 (492)
+|+|. + .+|++|+.||.|++||++++......... . .+ |...|.+++|+|++ +.+|++
T Consensus 152 ~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~---~~--h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-L---EG--HSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp EECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE-E---CC--CSSCEEEEEECCCCSSSEEEEE
T ss_pred EecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee-e---cC--CCCcEEEEEeccCCCCCCEEEE
Confidence 99994 5 57899999999999999987543221110 0 01 55689999999984 689999
Q ss_pred ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 222 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
++.||.|++||+++++.... ........+...|.+++|+|++++|++++ ++.|++|++....
T Consensus 225 ~s~Dg~I~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSCEEEEEESSSSSCCB----------CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EecCCEEEEecCCCCCCcce----------eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999988642111 01122334678899999999999999987 6789999998644
No 115
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.3e-33 Score=260.73 Aligned_cols=257 Identities=18% Similarity=0.207 Sum_probs=200.9
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
++.|+|+|++||+|+.||+|+|||+++++.+ ..+.+|...|.+++++ +.+|++|+.|
T Consensus 152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~---------------------~~~~~h~~~v~~~s~~--~~~l~sgs~d 208 (420)
T 4gga_A 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL---------------------RNMTSHSARVGSLSWN--SYILSSGSRS 208 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEE---------------------EEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred EEEECCCCCEEEEEECCCeEEEEEcCCCcEE---------------------EEEeCCCCceEEEeeC--CCEEEEEeCC
Confidence 4678999999999999999999999988876 7789999999998885 6799999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee--eeEEeecCCCceEEEEEcC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~i~~~~ 160 (492)
+.+++|+..........+.+|...+..+.|+| ++.++++++.|+.+++|+...++.. .......|...|.+++|+|
T Consensus 209 ~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p 286 (420)
T 4gga_A 209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286 (420)
T ss_dssp SEEEEEETTSSSCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECT
T ss_pred CceeEeeecccceeeEEecccccceeeeeecC--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCC
Confidence 99999999876655555589999999999999 9999999999999999999876532 2234667899999999999
Q ss_pred CCCcEEEEE--cCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe--cCCCeEEEEecccc
Q 011160 161 GSPHVFYTC--GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA--GSDEYTRLYDIRKY 236 (492)
Q Consensus 161 ~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~v~i~d~~~~ 236 (492)
.++.+++++ +.|+.|++||+++++....+. ....+.++.|+|+ +..++++ +.|+.|++||+.++
T Consensus 287 ~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-----------~~~~v~~~~~~~~-~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------AHSQVCSILWSPH-YKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp TCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-----------CSSCEEEEEEETT-TTEEEEEECTTTCCEEEEETTTC
T ss_pred CcccEEEEEeecCCCEEEEEeCCccccceeec-----------cccceeeeeecCC-CCeEEEEEecCCCEEEEEECCCC
Confidence 987777664 579999999999998877665 3346788888887 4455443 36788888887653
Q ss_pred cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCC
Q 011160 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (492)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (492)
+
T Consensus 355 ~------------------------------------------------------------------------------- 355 (420)
T 4gga_A 355 A------------------------------------------------------------------------------- 355 (420)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEee
Q 011160 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (492)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (492)
.+..+.+|... |.+++| +|+|++||+|+.|++|+|||+....+.+..+.+...+....+
T Consensus 356 ---------------~v~~l~gH~~~--V~~l~~-spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 356 ---------------KVAELKGHTSR--VLSLTM-SPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp ---------------EEEEECCCSSC--EEEEEE-CTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred ---------------EEEEEcCCCCC--EEEEEE-cCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 23456677776 899998 999999999999999999999887776666655544443333
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-33 Score=263.30 Aligned_cols=317 Identities=9% Similarity=0.013 Sum_probs=222.5
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCc---chhhhhhhcc------------------cccccc--------------
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQ---LSTRNFALRR------------------RASEDL-------------- 47 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~---~~~~~~~~~~------------------~~~~~~-------------- 47 (492)
.+.++++|++|+++. ++.|++||+.+|+ .+........ ....+.
T Consensus 9 ~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (450)
T 2vdu_B 9 NLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT 87 (450)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred EEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence 456899999766664 7899999999998 4322110000 000000
Q ss_pred -eeeeeeeEeecCccceEEEEEEcCCCCEE-EEecCCCeEEEEECC--CCceeeeec-cCcCcceEEEEecCCCCCceEE
Q 011160 48 -VLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWK--TERVKLSFH-SGHNDNVFQAKIMPFTDDRSIV 122 (492)
Q Consensus 48 -~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~ 122 (492)
...........+|.+.|++++|+|++++| ++|+.||.|+||++. +++.+..+. ..|...|.+++|+| ++.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~ 165 (450)
T 2vdu_B 88 AAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVI 165 (450)
T ss_dssp ------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEEE
T ss_pred CccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEEE
Confidence 00001112334677889999999999996 899999999999998 777766652 15678999999999 999999
Q ss_pred eecCCCcEEEEecccCCeee--eEEeecCCCceEEEEEcCC---CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC
Q 011160 123 TCAADGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIEPG---SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (492)
Q Consensus 123 ~~~~dg~v~iw~~~~~~~~~--~~~~~~~~~~v~~i~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (492)
+++.+|.|++|++.++.... ...+.+|...|++++|+|+ + .+|++++.|+.|++||+++++.+..+..
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~------ 238 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWLF------ 238 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEECC------
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeeec------
Confidence 99999999999998766542 2237789999999999999 7 6899999999999999998887655321
Q ss_pred CcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCC----------CcCCCcccceEEE
Q 011160 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP----------NLIGDEQVGITGL 267 (492)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~ 267 (492)
+ +...|.+++|+ + +.+|++++.|+.|++||+++++....+.........+.. .........|.++
T Consensus 239 -~--h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 239 -G--HKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp -C--CSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred -C--CCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 1 55689999999 6 789999999999999999988754433221100000000 0001234679999
Q ss_pred EEcCCCCeeEeec--CCcEEEEec--CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccce
Q 011160 268 AFSDQSELLVSYN--DEFIYLFTQ--DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (492)
Q Consensus 268 ~~s~~~~~l~~~~--~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (492)
+|+|++++|++++ ++.|++|++ ..+.. ...+..+.+| ..
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~-----------------------------------l~~~~~~~~~-~~- 356 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGD-----------------------------------LALKQIITFP-YN- 356 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTC-----------------------------------EEEEEEEECS-SC-
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCc-----------------------------------eeeccEeccC-Cc-
Confidence 9999999998886 568999999 33100 2345566666 33
Q ss_pred eeeeEEeecCCCcEEEEeec------cCeEEEEecC
Q 011160 344 TVKGVNFFGPKCEYVVSGSD------CGRIFIWKKK 373 (492)
Q Consensus 344 ~v~~~~~~s~~g~~l~sg~~------dg~i~iwd~~ 373 (492)
+.+++| +|++.++++++. +..|.+|.+.
T Consensus 357 -v~~~~~-~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 357 -VISLSA-HNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp -EEEEEE-ETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred -eEEEEe-cCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 899998 996555555443 4457888764
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.5e-33 Score=261.99 Aligned_cols=266 Identities=15% Similarity=0.230 Sum_probs=206.9
Q ss_pred eecCccceEEEEEEcCC-CCEEEEecCCCeEEEEECCC----------CceeeeeccCcCcceEEEEecCCCCCc-eEEe
Q 011160 56 KLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT----------ERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVT 123 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~ 123 (492)
.+.+|.+.|++++|+|+ +.+|++++.+|.|++|++.+ ......+ .+|...|++++|+| ++. +|++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~s 199 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNP--NLNGYLLS 199 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECT--TSTTEEEE
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCC--CCCCeEEE
Confidence 44579999999999997 68999999999999999976 4555555 68999999999999 877 9999
Q ss_pred ecCCCcEEEEecccCCe-----eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC---ccceeecCCCC
Q 011160 124 CAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA---ATELFTCRPID 195 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~ 195 (492)
|+.||.|++|++..+.. .....+.+|...|.+++|+|+++.+|++++.||.|++||++++. ....+..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~---- 275 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA---- 275 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC----
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec----
Confidence 99999999999987432 11234668999999999999666899999999999999999873 3333332
Q ss_pred CCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC-
Q 011160 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE- 274 (492)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~- 274 (492)
+...|++++|+|++..++++|+.||.|++||+++... +......|...|.+++|+|+++
T Consensus 276 ------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------------~~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 276 ------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--------------KLHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp ------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------CSEEEECCSSCEEEEEECSSCTT
T ss_pred ------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------------CeEEeecCCCCEEEEEECCCCCC
Confidence 5568999999998656899999999999999987431 2233445788999999999985
Q ss_pred eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC
Q 011160 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (492)
Q Consensus 275 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 353 (492)
+|++++ ++.|++||+.......... . ........+..+.+|... |.+++| +|
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~------~------------------~~~~~~~~~~~~~~h~~~--v~~~~~-~p 388 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTE------D------------------AEDGPPELLFIHGGHTAK--ISDFSW-NP 388 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHH------H------------------HHHCCTTEEEECCCCSSC--EEEEEE-CS
T ss_pred EEEEEeCCCcEEEEeCCCCccccCcc------c------------------cccCCcceEEEcCCCCCC--ceEEEE-CC
Confidence 577766 7799999998632111000 0 000001334556677765 899998 99
Q ss_pred CCc-EEEEeeccCeEEEEecCCC
Q 011160 354 KCE-YVVSGSDCGRIFIWKKKGG 375 (492)
Q Consensus 354 ~g~-~l~sg~~dg~i~iwd~~~~ 375 (492)
+++ +|++++.||.|+||++...
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEECCCCEEEeEcccc
Confidence 999 9999999999999998653
No 118
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=4.3e-32 Score=259.78 Aligned_cols=338 Identities=12% Similarity=0.055 Sum_probs=252.7
Q ss_pred CCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeE
Q 011160 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (492)
Q Consensus 6 ~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (492)
++|++.++++++.|++|.+||..+++++ .++..+.. +.+++|+|+|++|++++.|++|
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~---------------------~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V 202 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIV---------------------KVIDTGYA-VHISRMSASGRYLLVIGRDARI 202 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEE---------------------EEEECSTT-EEEEEECTTSCEEEEEETTSEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEE---------------------EEEecCcc-cceEEECCCCCEEEEECCCCeE
Confidence 6778889999999999999999998877 55653333 8899999999999999999999
Q ss_pred EEEEC--CCCceeeeeccCcCcceEEEEecCCC--CCceEEeec-CCCcEEEEecccCCeeeeEEeec--------CC-C
Q 011160 86 ILWDW--KTERVKLSFHSGHNDNVFQAKIMPFT--DDRSIVTCA-ADGQVRHAQILERGGVETKLLGK--------HQ-G 151 (492)
Q Consensus 86 ~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~--------~~-~ 151 (492)
++||+ .+++.+..+. +...+..++|+|+. ++++|++++ .+++|.+||..+.+.+......+ |. .
T Consensus 203 ~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~ 280 (543)
T 1nir_A 203 DMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 280 (543)
T ss_dssp EEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred EEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCC
Confidence 99999 7888877773 45568999999721 578888887 48999999998887766533322 22 3
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
.+..+.++|+++.++++...++.|.+||+.+.+.+...... ....+..++|+|++..+++++..+++|.+|
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---------~~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---------AAPFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---------CCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---------cCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 78999999998888888999999999999887654421111 223467789999843344556678999999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-CCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
|+.++++......+ ...|......+ ++|+ +.+++++. +++|.+|++.+.....
T Consensus 352 D~~tg~l~~~i~~g-----------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~------------ 407 (543)
T 1nir_A 352 DSKDRRLSALVDVG-----------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ------------ 407 (543)
T ss_dssp ETTTTEEEEEEECS-----------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT------------
T ss_pred ECCCCeEEEeeccC-----------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch------------
Confidence 99998765432211 01133223333 4677 66677764 5789999998632110
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee-------ccCeEEEEecCCCeee-EE
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-------DCGRIFIWKKKGGELI-RV 380 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~-------~dg~i~iwd~~~~~~~-~~ 380 (492)
...+.++++.+|... +..+.+ +|+|++|++++ .+++|.|||+.+++.. ..
T Consensus 408 -------------------~~~~~v~~l~~~g~~--~~~v~~-~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~ 465 (543)
T 1nir_A 408 -------------------YAWKKVAELQGQGGG--SLFIKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 465 (543)
T ss_dssp -------------------TBTSEEEEEECSCSC--CCCEEC-CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred -------------------hcCeEEEEEEcCCCC--ceEEEc-CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence 003456778887655 678888 99999999987 3789999999999877 55
Q ss_pred E--------ecCCceeEEEeecCCCCeEEEee-----CCCCEEEeccCCCCCCcc
Q 011160 381 I--------EADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRATL 422 (492)
Q Consensus 381 ~--------~~h~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~ 422 (492)
+ ..+...+..++|+|+|+.|+.+. .|+.|.|||..++++...
T Consensus 466 ~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 466 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 4 34567899999999999887652 479999999999887644
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=8e-32 Score=250.16 Aligned_cols=270 Identities=12% Similarity=0.139 Sum_probs=213.6
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceE-EeecCCCcEEEEecccCCeeeeEEeecCCCc
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
.++++++.|+.|++||+.+++.+..+ ..| ..+.+++|+| ++++| ++++.++.|++||+.+++.... +..+ ..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~--~~~~-~~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIAT--VPAG-SS 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEE--EECS-SS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEE--EECC-CC
Confidence 46889999999999999999887776 455 4589999999 99876 6777899999999988776554 4433 38
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
+.+++|+|++..++++++.++.|++||+.+++....+.. ...+.+++|+|++..++++++.++.|++||
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----------GKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-----------CCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999999965556777889999999999987766652 235789999998443447888999999999
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCee-Eeec-CCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
+.+++..... . ....+.+++|+|++++| ++++ ++.|++||+.++
T Consensus 145 ~~~~~~~~~~---------------~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------ 190 (391)
T 1l0q_A 145 TVTKAVINTV---------------S-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------ 190 (391)
T ss_dssp TTTTEEEEEE---------------E-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------
T ss_pred CCCCcEEEEE---------------e-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------
Confidence 9887643221 1 12456899999999877 4555 568999999763
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee---ccCeEEEEecCCCeeeEEEecCCce
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRIFIWKKKGGELIRVIEADRHV 387 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~---~dg~i~iwd~~~~~~~~~~~~h~~~ 387 (492)
.....+..+ . .+.+++| +|+|++|++++ .++.|++||+.+++.+..+..|..
T Consensus 191 --------------------~~~~~~~~~-~--~~~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 245 (391)
T 1l0q_A 191 --------------------SVIDTVKVE-A--APSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD- 245 (391)
T ss_dssp --------------------EEEEEEECS-S--EEEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-
T ss_pred --------------------eEEEEEecC-C--CccceEE-CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-
Confidence 223333322 2 3788898 99999999888 689999999999999999987754
Q ss_pred eEEEeecCCCCeE-EEeeCCCCEEEeccCCCCCC
Q 011160 388 VNCIEPHPHSTVL-ASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 388 v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~ 420 (492)
+.+++|+|++++| ++++.|+.|++||+.+++..
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 7899999999977 67788999999999887654
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=9.3e-34 Score=262.29 Aligned_cols=253 Identities=9% Similarity=0.058 Sum_probs=183.2
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC--------CCCE
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--------DGDI 75 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------~~~~ 75 (492)
.++++++.+|++|+.|++|+|||..+++.. .......+.+|.+.|++++|+| |+++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETII----------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEE----------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccc----------------eeeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence 457788889999999999999999987654 3344567889999999999998 7899
Q ss_pred EEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCC-ceEEeecCCCcEEEEecccCCeeee-----------
Q 011160 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVET----------- 143 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~----------- 143 (492)
||||+.|++|+|||+.++..+..+ .+|...|.+++|+| ++ .+|++++.||+|++||+.++.....
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p--~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRP--SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEET--TEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred EEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECC--CCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 999999999999999888877766 57889999999999 76 5799999999999999987654221
Q ss_pred ------------EEeecCCCceEEEEEc-CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCC--------CCccee
Q 011160 144 ------------KLLGKHQGRAHKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--------RRNYMT 202 (492)
Q Consensus 144 ------------~~~~~~~~~v~~i~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~ 202 (492)
....+|...+.++.|+ |++ ..+++++.|+.+++||+..+.....+..+.... ......
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred EEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 1124577889999987 677 688999999999999998877654443221100 000001
Q ss_pred ecceEEEEEcC-CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC
Q 011160 203 VVNLNAIAIDP-RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (492)
Q Consensus 203 ~~~v~~~~~~p-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (492)
........|+| .++.++++|+.||.|++||+.+++.. .....|...|.+++|+|+|++||++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~---------------~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN---------------SIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC---------------EEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE---------------EEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 11122234444 33456778899999999999887532 223345678999999999999999999
Q ss_pred CcEEEEecCC
Q 011160 282 EFIYLFTQDM 291 (492)
Q Consensus 282 ~~i~~~d~~~ 291 (492)
+.+.+|.+..
T Consensus 380 ~Gv~lvrL~g 389 (393)
T 4gq1_A 380 GSVLLTRLMG 389 (393)
T ss_dssp SEEEEEEEGG
T ss_pred CCeEEEEEeC
Confidence 9998888753
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.7e-32 Score=237.63 Aligned_cols=279 Identities=13% Similarity=0.046 Sum_probs=174.0
Q ss_pred eEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE-e-cCCCeEEEEE
Q 011160 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-G-SDDRRVILWD 89 (492)
Q Consensus 12 ~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~-~~d~~i~iwd 89 (492)
-++++++ .+|++|+..++. ..++.+++++|..+|..+++.||..-|+. + +.=..-.++-
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~s 116 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAW------------------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRA 116 (356)
T ss_dssp EEEEEES-SEEEEEEESSSS------------------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEE
T ss_pred EEEEecc-ceEEEcccCCCc------------------cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEE
Confidence 3777774 589999999772 22344677777777777777775322211 1 1111111111
Q ss_pred CC--CC----ceeeeeccCcCcceEEEEecCCCCCceEEeec--CCCcEEEEeccc-CCeeeeEEeecCCCceEEEEEcC
Q 011160 90 WK--TE----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 90 ~~--~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~-~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
+. .. .. .....+|...|..+ + +++++.+++ .|+.|++|++.. ++.+.. +..|...++.++|+|
T Consensus 117 la~spd~~~~~~-~l~s~g~~~~v~~l---~--~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s--~~~~~~~v~~l~fs~ 188 (356)
T 2w18_A 117 LFCSSDDESEKQ-VLLKSGNIKAVLGL---T--KRRLVSSSGTLSDQQVEVMTFAEDGGGKEN--QFLMPPEETILTFAE 188 (356)
T ss_dssp ECC------CCE-EEEEEEEEEEEEEE---T--TTEEEEEESSSTTCEEEEEEECTTSCEEEE--EEECCCSSCEEEEEE
T ss_pred EEECCCcccccc-EEEeCCCeEEEEec---C--CCcEEEecccCCCCcEEEEEECCCCceeee--eccCCCceeeEEeec
Confidence 11 01 11 01112344344443 4 666666643 588888888844 444433 668888899999998
Q ss_pred ---CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccc
Q 011160 161 ---GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (492)
Q Consensus 161 ---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~ 237 (492)
++ .+|++++.|++|+|||+++++.+..+..+.. +...+.+++|+|+ +.++++++.+.. +|+
T Consensus 189 ~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~-------~v~~v~~vafSpd-G~~lvs~s~~~~--~w~----- 252 (356)
T 2w18_A 189 VQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDDS-------YQASVCHKAYSEM-GLLFIVLSHPCA--KES----- 252 (356)
T ss_dssp EETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC----------CCCEEEEEEET-TEEEEEEC--------------
T ss_pred cCCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCCc-------ceeeeEEEEECCC-CCEEEEeccCCC--cce-----
Confidence 56 5899999999999999999999888763211 2346788899997 677765543221 122
Q ss_pred ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCC
Q 011160 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (492)
+++++ +.+|++||..+++
T Consensus 253 --------------------------------------laSGs~D~tIklWd~~tgk----------------------- 271 (356)
T 2w18_A 253 --------------------------------------ESLRSPVFQLIVINPKTTL----------------------- 271 (356)
T ss_dssp -------------------------------------------CCEEEEEEETTTTE-----------------------
T ss_pred --------------------------------------eeccCCCcEEEEEECCCCE-----------------------
Confidence 22333 3345555555431
Q ss_pred CCCCCCCCCCCccccCCcee-----eccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeE-E
Q 011160 317 TSAASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-C 390 (492)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~ 390 (492)
.+..+ .+|... +.+..+ ++.++|+|+.|++|+|||+.+++++.++.+|...+. .
T Consensus 272 ---------------~l~v~~~~~p~Gh~~~--~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 272 ---------------SVGVMLYCLPPGQAGR--FLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp ---------------EEEEEEECCCTTCCCC--EEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred ---------------EEEEEEeeccCCCcce--eEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 11111 233332 233333 488999999999999999999999999999987655 5
Q ss_pred EeecCCCCeEEEeeCCCCEEEecc
Q 011160 391 IEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 391 ~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
++|+|||++|++|+.|++|+||++
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 899999999999999999999986
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5e-32 Score=255.17 Aligned_cols=280 Identities=15% Similarity=0.153 Sum_probs=221.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.++|++.++++++.++.|++||+.+++... ......+.+|.+.|.+++|+|+++++++++.|
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR----------------LSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEEE----------------ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEee----------------ecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 35567788889999999999999999887651 11111456899999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
+.|++||+.+++.+..+ ..|...+.+++|+| +++.++ +++.++.|++||+.+++.... +.. ...+.+++|+|+
T Consensus 191 ~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~ 264 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATV-DLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRK--TDK-IGLPRGLLLSKD 264 (433)
T ss_dssp TEEEEEETTTCCEEEEE-ECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEE--CCC-CSEEEEEEECTT
T ss_pred CEEEEEECCCceEEEEE-cCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEE--ecC-CCCceEEEEcCC
Confidence 99999999998888777 57888999999999 888875 555799999999988765543 443 456899999999
Q ss_pred CCcEEEEEc--------CCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEec
Q 011160 162 SPHVFYTCG--------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 162 ~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~ 233 (492)
+. .+++++ .|+.|++||+++++....+. +...+.+++|+|++..++++++.++.|++||+
T Consensus 265 g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 265 GK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-----------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp SS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-----------EEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred CC-EEEEEECCCCccccCCCeEEEEECCCCcEEeecc-----------CCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 95 667766 48899999999887766553 44478899999985457778899999999999
Q ss_pred ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC----------------CcEEEEecCCCCCCCC
Q 011160 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----------------EFIYLFTQDMGLGPNP 297 (492)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------------~~i~~~d~~~~~~~~~ 297 (492)
.+++..... .+...+.+++|+|++++|++++. +.|++||+.++
T Consensus 333 ~~~~~~~~~----------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~----- 391 (433)
T 3bws_A 333 KEKKVQKSI----------------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD----- 391 (433)
T ss_dssp TTTEEEEEE----------------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-----
T ss_pred CCCcEEEEe----------------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-----
Confidence 876643211 13456889999999998877763 38999998763
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec-cCeEEEEecCC
Q 011160 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG 374 (492)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-dg~i~iwd~~~ 374 (492)
.....+..+.. +.+++| +|+|++|++++. |+.|++|++..
T Consensus 392 ---------------------------------~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 392 ---------------------------------TVKEFWEAGNQ---PTGLDV-SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ---------------------------------EEEEEEECSSS---EEEEEE-CTTSCEEEEEETTTTEEEEEEETT
T ss_pred ---------------------------------cEEEEecCCCC---CceEEE-cCCCCEEEEEECCCCeEEEEEecC
Confidence 33444444332 788998 999999988775 99999999853
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7.1e-31 Score=239.44 Aligned_cols=263 Identities=14% Similarity=0.092 Sum_probs=185.2
Q ss_pred EEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEE
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 166 (492)
||++.+...+... ..|...|++++|+| ++++|++|+.++ +++|++........ .+...+..+++.++++.++
T Consensus 3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPE-NHVSNPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHPVAHIMS----QEMRHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -----------------CCCCCEEEECT--TSSEEEEECSSE-EEEEEETTEEEEEE----EECSCCCEEEECTTSSEEE
T ss_pred cccccccCCcccc-ccCCCceEEEEECC--CCCEEEEEcCCE-EEEEecCCcceeee----eecCCeEEEEEcCCCCEEE
Confidence 4566666665555 68999999999999 999999998775 78999876554433 2223578888988885555
Q ss_pred EEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc-cccCCCCCC
Q 011160 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFG 245 (492)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~ 245 (492)
++++.|+.|++||+.+++.+..+. +...|.+++|+++ .++++ .++.|++||+.+. +....
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-----------~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~---- 135 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-----------VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITD---- 135 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSC----
T ss_pred EEECCccEEEEEECCCCcEEEEEE-----------CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEE----
Confidence 778889999999999998887765 3347999999985 33333 4789999999876 32211
Q ss_pred CCccccCCCCcCCCcccceEEEEEcCCCCeeEee--c-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 011160 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (492)
+ . .....+++++ .+++.+ + ++.|++||+.++.........+
T Consensus 136 ----------~-~---~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~-------------------- 179 (355)
T 3vu4_A 136 ----------D-I---RFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV-------------------- 179 (355)
T ss_dssp ----------C-E---EEEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------
T ss_pred ----------e-c---cCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc--------------------
Confidence 1 1 1344566777 566653 4 6789999998753211100000
Q ss_pred CCCCCccccC-CceeeccccceeeeeEEeecCCCcEEEEeeccCe-EEEEecCCCeeeEEEe-c-CCceeEEEeecCCCC
Q 011160 323 STANTDVRIA-PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIE-A-DRHVVNCIEPHPHST 398 (492)
Q Consensus 323 ~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~~~~s~~~~ 398 (492)
......+ ...+.+|... |.+++| +|+|++||+|+.||+ |+|||+.+++++..+. + |.+.|++++|+|+++
T Consensus 180 ---~~~~~~p~~~~~~~h~~~--v~~~~~-s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~ 253 (355)
T 3vu4_A 180 ---QQKAILGKGVLIKAHTNP--IKMVRL-NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS 253 (355)
T ss_dssp ----------CCEEECCCSSC--EEEEEE-CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC
T ss_pred ---cccccCcccEEEEccCCc--eEEEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC
Confidence 0000122 6778899887 999999 999999999999998 9999999999999998 5 999999999999999
Q ss_pred eEEEeeCCCCEEEeccCCCC
Q 011160 399 VLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 399 ~l~s~~~dg~i~iw~~~~~~ 418 (492)
+|++++.|++|++|++..+.
T Consensus 254 ~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 254 KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEETTCEEEEEESSCCS
T ss_pred EEEEEECCCEEEEEEccCCC
Confidence 99999999999999998754
No 124
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.8e-32 Score=251.83 Aligned_cols=248 Identities=17% Similarity=0.199 Sum_probs=196.7
Q ss_pred CCCCCC-CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCC-CEEEEec
Q 011160 3 DASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGS 80 (492)
Q Consensus 3 ~~~~~~-~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~ 80 (492)
++.|+| ++++|++|+.||+|+|||+.++..... .......+.+|...|++++|+|++ .+|++++
T Consensus 86 ~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~--------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP--------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC--------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc--------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 356778 899999999999999999998754310 002336788999999999999998 6999999
Q ss_pred CCCeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEe-ecCCCc-eEEEE
Q 011160 81 DDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL-GKHQGR-AHKLA 157 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~~~-v~~i~ 157 (492)
.|+.|++||+.+++.+..+. .+|...|.+++|+| ++.+|++++.||.|++||++++..+.. + ..|... +.+++
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAE--KDRPHEGTRPVHAV 227 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEE--EECSSCSSSCCEEE
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeee--eccCCCCCcceEEE
Confidence 99999999999998877764 57999999999999 999999999999999999988776554 4 567665 89999
Q ss_pred EcCCCCcEEEEE---cCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE-EEecCCCeEEEEec
Q 011160 158 IEPGSPHVFYTC---GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYTRLYDI 233 (492)
Q Consensus 158 ~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~v~i~d~ 233 (492)
|+|++ .+|++| +.|+.|++||++++.......... +...+.+++|+|++ .+| ++++.||.|++||+
T Consensus 228 ~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 228 FVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELD--------TSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp ECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECC--------CCSSCEEEEEETTT-TEEEEEETTCSCEEEEEE
T ss_pred EcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEecc--------CCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEe
Confidence 99998 688888 799999999999876522221111 34568999999984 555 56778999999999
Q ss_pred ccccc-cCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCC
Q 011160 234 RKYKW-DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (492)
Q Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~ 292 (492)
.+++. ... .... .+...|.+++|+|++.++++ +++.+++|++.++
T Consensus 298 ~~~~~~~~~------------l~~~-~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 298 TSEAPFLHY------------LSMF-SSKESQRGMGYMPKRGLEVN-KCEIARFYKLHER 343 (402)
T ss_dssp CSSTTCEEE------------EEEE-CCSSCCSEEEECCGGGSCGG-GTEEEEEEEEETT
T ss_pred cCCCcceEe------------eccc-ccCCcccceEEeccccccee-cceeEEEEEcCCC
Confidence 87652 100 0001 14578999999999998875 4568999999874
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=247.29 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=176.8
Q ss_pred CCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC---------Cccc
Q 011160 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG---------AATE 187 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~ 187 (492)
++.+|++|+.||.|++||+.+++.+.. +. ...|.++.++|. +++++.|++|++|+.... +.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~--~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITT--IT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEE--EE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEE--Ee--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 789999999999999999998877655 32 456778888886 899999999999987642 2222
Q ss_pred eeecCCCCCCCcceeecceEEEEEcC--CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceE
Q 011160 188 LFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT 265 (492)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (492)
.+.. .+...|.+++|+| + +.++++++.||.|++||+++++.... ....+...+.
T Consensus 119 ~~~~---------~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~--------------~~~~~~~~i~ 174 (343)
T 3lrv_A 119 EIEV---------DSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIV--------------HSAKSDVEYS 174 (343)
T ss_dssp EEEC---------CCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEE--------------ECCCSSCCCC
T ss_pred Eeec---------CCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEE--------------EecCCCCceE
Confidence 2211 1335799999999 8 78999999999999999998763211 1123455799
Q ss_pred EEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCC-ceeec-cccc
Q 011160 266 GLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP-QVYKG-HRNC 342 (492)
Q Consensus 266 ~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~ 342 (492)
+++|+|++.+|++++ ++.|++||++++ ... ..+.+ |...
T Consensus 175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~--------------------------------------~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPDGILDVYNLSSP--------------------------------------DQASSRFPVDEEAK 216 (343)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEESSCT--------------------------------------TSCCEECCCCTTSC
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCC--------------------------------------CCCccEEeccCCCC
Confidence 999999999999987 678999999874 222 45666 7766
Q ss_pred eeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEec---CCceeE--EEeecCCCCeEEEeeC-CCCEEEeccCC
Q 011160 343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA---DRHVVN--CIEPHPHSTVLASSGI-ESDIKILTPNA 416 (492)
Q Consensus 343 ~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 416 (492)
|.+++| +|+|.+|++++ ++.|++||+.+++.+..+.. |...+. +++|+|++++|++++. |+.|++|++..
T Consensus 217 --v~~l~f-s~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 217 --IKEVKF-ADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp --EEEEEE-CTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred --EEEEEE-eCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 999999 99999999999 55999999999877655543 444444 6999999999999988 99999999966
Q ss_pred CC
Q 011160 417 AD 418 (492)
Q Consensus 417 ~~ 418 (492)
..
T Consensus 293 ~~ 294 (343)
T 3lrv_A 293 KT 294 (343)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=1.9e-30 Score=241.27 Aligned_cols=290 Identities=10% Similarity=0.058 Sum_probs=216.8
Q ss_pred ceEeecc----Ccc----eEEEEee--ccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcC---------
Q 011160 11 KRARTSV----DKA----LVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--------- 71 (492)
Q Consensus 11 ~~l~t~~----~dg----~v~~w~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------- 71 (492)
..+++|+ .+| .|+|||+ .+|+.+. ...+.+|...+..+++++
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~d~~~~~~~ 136 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA-------------------QNSYKVNKQWLRYAGHTASDEVFEKLT 136 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE-------------------EEEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe-------------------eeEEEcChhHHHHHHHHHHHHHHHHHc
Confidence 4566775 467 9999999 8887552 145677777777777664
Q ss_pred -----CCCEEEEecCC------CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC---cEEEEeccc
Q 011160 72 -----DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILE 137 (492)
Q Consensus 72 -----~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~ 137 (492)
.+..|+.++.+ +.|++||+..+. ...+ .+|...+.+++|+| ++++|++++.++ .|++||+.+
T Consensus 137 g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l-~~~~~~v~~~~~Sp--dg~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 137 GIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp SSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE-EEESSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTT
T ss_pred CCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE-eCCCCcceeeEEcC--CCCEEEEEEecCCCcEEEEEECCC
Confidence 25566666554 799999997544 4555 57889999999999 999999998875 999999988
Q ss_pred CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCc--EEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
++... +..|...+.+++|+|+|..++++++.++. |++||+++++...... +...+.+++|+|+
T Consensus 213 g~~~~---l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~spd- 277 (415)
T 2hqs_A 213 GAVRQ---VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTWFPD- 277 (415)
T ss_dssp CCEEE---EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-----------CSSCEEEEEECTT-
T ss_pred CcEEE---eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC-----------CCCcccceEECCC-
Confidence 76542 56678899999999999645447776655 9999999887532221 3446889999998
Q ss_pred CceEEEecC-CC--eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C---CcEEEEe
Q 011160 216 ANLFAVAGS-DE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D---EFIYLFT 288 (492)
Q Consensus 216 ~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~---~~i~~~d 288 (492)
++.|++++. ++ .|++||+.+++.. ....+...+.+++|+|+|++|++++ + ..|++||
T Consensus 278 g~~l~~~s~~~g~~~i~~~d~~~~~~~----------------~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 278 SQNLAFTSDQAGRPQVYKVNINGGAPQ----------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCCE----------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred CCEEEEEECCCCCcEEEEEECCCCCEE----------------EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 667776664 45 6777788775421 1112345788999999999998877 3 2699999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC---
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG--- 365 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg--- 365 (492)
+.++. ...+..+. .+.+++| +|+|++|++++.++
T Consensus 342 ~~~~~---------------------------------------~~~l~~~~---~~~~~~~-spdg~~l~~~s~~~~~~ 378 (415)
T 2hqs_A 342 LATGG---------------------------------------VQVLSSTF---LDETPSL-APNGTMVIYSSSQGMGS 378 (415)
T ss_dssp TTTCC---------------------------------------EEECCCSS---SCEEEEE-CTTSSEEEEEEEETTEE
T ss_pred CCCCC---------------------------------------EEEecCCC---CcCCeEE-cCCCCEEEEEEcCCCcc
Confidence 98742 12333333 2788898 99999999988877
Q ss_pred eEEEEecCCCeeeEEEecCCceeEEEeecCCCC
Q 011160 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST 398 (492)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~ 398 (492)
.|++||+. +.....+..|.+.|.+++|+|...
T Consensus 379 ~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 379 VLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 89999985 666788999999999999999754
No 127
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=3e-30 Score=232.45 Aligned_cols=198 Identities=17% Similarity=0.206 Sum_probs=160.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
++.|+|++++|++|+.||+|+||++++++.+ +.+.+|...+.++.+ ++.+|++++.+
T Consensus 72 ~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~---------------------~~~~~h~~~~~~~~~--~~~~l~s~~~~ 128 (318)
T 4ggc_A 72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL---------------------RNMTSHSARVGSLSW--NSYILSSGSRS 128 (318)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEE--ETTEEEEEETT
T ss_pred EEEECCCCCEEEEEECCCcEEEeecCCceeE---------------------EEecCccceEEEeec--CCCEEEEEecC
Confidence 4678999999999999999999999988876 678899999887666 46799999999
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee--eeEEeecCCCceEEEEEcC
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~i~~~~ 160 (492)
+.+++|+..........+.+|...+..+.+.+ ++.+|++++.||.|++||+.+++.. .......+...|.+++++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 206 (318)
T 4ggc_A 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206 (318)
T ss_dssp SEEEEEETTSSSCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECT
T ss_pred CceEeeecCCCceeEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecC
Confidence 99999999877665555579999999999999 9999999999999999999876532 2233556788999999999
Q ss_pred CCCcEE--EEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE--ecCCCeEEEEecccc
Q 011160 161 GSPHVF--YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV--AGSDEYTRLYDIRKY 236 (492)
Q Consensus 161 ~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~~dg~v~i~d~~~~ 236 (492)
.++.++ ++++.++.|++||.+......... +...+..+.|+|.+ ..+++ |+.|+.|++||++++
T Consensus 207 ~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp TSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-----------CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTC
T ss_pred CCCcEEEEEecCCCCEEEEEeccccccccccc-----------ceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCC
Confidence 887665 356788999999998887665544 44468888888874 44443 347888888888764
Q ss_pred c
Q 011160 237 K 237 (492)
Q Consensus 237 ~ 237 (492)
+
T Consensus 275 ~ 275 (318)
T 4ggc_A 275 A 275 (318)
T ss_dssp C
T ss_pred c
Confidence 3
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=7.5e-30 Score=237.32 Aligned_cols=290 Identities=14% Similarity=0.094 Sum_probs=213.3
Q ss_pred ccceEEEEEEcCCC-CEEEEec----CCC----eEEEEEC--CCCceeee-eccCcCcceEEEEecCC------------
Q 011160 60 HRGCVNTVSFNTDG-DILISGS----DDR----RVILWDW--KTERVKLS-FHSGHNDNVFQAKIMPF------------ 115 (492)
Q Consensus 60 h~~~v~~~~~s~~~-~~l~s~~----~d~----~i~iwd~--~~~~~~~~-~~~~~~~~v~~~~~~~~------------ 115 (492)
+...+...+|.+.| +++++|+ .+| .|+|||+ .+++.+.. .+.+|...+..+++++.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 34577788898877 4666776 467 8999999 88887632 22678877777776640
Q ss_pred CCCceEEeecCC------CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC---cEEEEeCCCCCcc
Q 011160 116 TDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAAT 186 (492)
Q Consensus 116 ~~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~ 186 (492)
..+..++.++.+ +.|++||+.... .. .+..|...+.+++|+|++ ..|++++.++ .|++||+++++..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~--~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF--VVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE--EEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCC-CE--EEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEE
Confidence 015566665543 799999997533 33 367789999999999999 4778887775 9999999998765
Q ss_pred ceeecCCCCCCCcceeecceEEEEEcCCCCceEE-EecCCCe--EEEEecccccccCCCCCCCCccccCCCCcCCCcccc
Q 011160 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (492)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (492)
.... +...+.+++|+|+ ++.|+ +++.++. |++||+.+++.. ....+...
T Consensus 217 ~l~~-----------~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~~----------------~l~~~~~~ 268 (415)
T 2hqs_A 217 QVAS-----------FPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQIR----------------QVTDGRSN 268 (415)
T ss_dssp EEEC-----------CSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE----------------ECCCCSSC
T ss_pred Eeec-----------CCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCEE----------------eCcCCCCc
Confidence 3322 3346899999998 55555 6766654 999999876521 12234567
Q ss_pred eEEEEEcCCCCeeEeecC-C---cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc
Q 011160 264 ITGLAFSDQSELLVSYND-E---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (492)
Q Consensus 264 i~~~~~s~~~~~l~~~~~-~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (492)
+.+++|+|+|++|+++++ + .|++||+.++. ...+..+
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---------------------------------------~~~l~~~ 309 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---------------------------------------PQRITWE 309 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------------------------------------CEECCCS
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------------------------------------EEEEecC
Confidence 999999999998887773 3 58888887642 2223333
Q ss_pred ccceeeeeEEeecCCCcEEEEeecc---CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCC---CEEEec
Q 011160 340 RNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILT 413 (492)
Q Consensus 340 ~~~~~v~~~~~~s~~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~ 413 (492)
... +.+++| +|+|++|++++.+ +.|++||+.+++. ..+..|. .+.+++|+|+|++|++++.++ .|++|+
T Consensus 310 ~~~--~~~~~~-spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 310 GSQ--NQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SSE--EEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CCc--ccCeEE-CCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 332 778888 9999999988764 6899999998876 4555554 799999999999999988877 799999
Q ss_pred cCCCCCCcccCc
Q 011160 414 PNAADRATLPTN 425 (492)
Q Consensus 414 ~~~~~~~~~~~~ 425 (492)
+.++....++.+
T Consensus 385 ~~g~~~~~l~~~ 396 (415)
T 2hqs_A 385 TDGRFKARLPAT 396 (415)
T ss_dssp TTSCCEEECCCS
T ss_pred CCCCcEEEeeCC
Confidence 987776666554
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=2.1e-28 Score=234.28 Aligned_cols=320 Identities=11% Similarity=0.095 Sum_probs=232.6
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec--ccCCeeeeEE
Q 011160 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI--LERGGVETKL 145 (492)
Q Consensus 68 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~--~~~~~~~~~~ 145 (492)
+|+|++.++++++.+++|.+||..+++.+..+..++. +..++|+| ++++|++++.++.|.+||+ .+++.+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~-- 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAE-- 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEE--
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEE--
Confidence 4889999999999999999999999999888843554 88999999 9999999999999999999 66655443
Q ss_pred eecCCCceEEEEEcC----CCCcEEEEEc-CCCcEEEEeCCCCCccceeecCCCCCC-CcceeecceEEEEEcCCCCceE
Q 011160 146 LGKHQGRAHKLAIEP----GSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 146 ~~~~~~~v~~i~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l 219 (492)
+. +...+..++|+| ++. ++++++ .+++|.+||..+++.+..+........ ..+.....+..+.++|+++.++
T Consensus 218 i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred Ee-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 44 445679999999 995 566665 589999999999998877764221000 0000122688999999877888
Q ss_pred EEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNP 297 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~ 297 (492)
++...++.|.+||+.+.+.... ... .+...+..++|+|+|++|++++ +++|.+||..++
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~-------------~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----- 356 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTV-------------TSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----- 356 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEE-------------EEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-----
T ss_pred EEECCCCeEEEEEecCCCccee-------------EEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-----
Confidence 8899999999999987542110 001 1234567899999999776554 568999999874
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec----cccceeeeeEEeecCC-CcEEEEee-ccCeEEEEe
Q 011160 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG----HRNCVTVKGVNFFGPK-CEYVVSGS-DCGRIFIWK 371 (492)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~s~~-g~~l~sg~-~dg~i~iwd 371 (492)
+....+.. |... .+.|++|+ |.+++++. .|++|.+|+
T Consensus 357 ---------------------------------~l~~~i~~g~~ph~g~----g~~~~~p~~g~~~~s~~~~d~~V~v~d 399 (543)
T 1nir_A 357 ---------------------------------RLSALVDVGKTPHPGR----GANFVHPKYGPVWSTSHLGDGSISLIG 399 (543)
T ss_dssp ---------------------------------EEEEEEECSSSBCCTT----CEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ---------------------------------eEEEeeccCCCCCCCC----CcccCCCCCccEEEeccCCCceEEEEE
Confidence 23333332 3322 22233677 66677765 689999999
Q ss_pred cCC-------CeeeEEEecCCceeEEEeecCCCCeEEEee-------CCCCEEEeccCCCCCC-cccCccccc--ccccc
Q 011160 372 KKG-------GELIRVIEADRHVVNCIEPHPHSTVLASSG-------IESDIKILTPNAADRA-TLPTNIEQF--KPKAT 434 (492)
Q Consensus 372 ~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-------~dg~i~iw~~~~~~~~-~~~~~~~~~--~~~~~ 434 (492)
+.+ +++++++.+|.+.+..++++|++++|++++ .+++|.|||+.+.+.. ... .+... ...+.
T Consensus 400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~v~~~~~~~~~~ 478 (543)
T 1nir_A 400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL-PIAEWADLGEGA 478 (543)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE-CHHHHHCCCSSC
T ss_pred eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe-echhhcccCCCC
Confidence 988 899999999988899999999999999987 3789999999998765 211 01000 01124
Q ss_pred cccccccCchhhHHHHhh
Q 011160 435 RWMHHVLSPEDLMMQLFS 452 (492)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~ 452 (492)
.++..+++.++....++.
T Consensus 479 ~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CEEEEEEECSSSSEEEEE
T ss_pred CceEeccCCCCCCEEEEE
Confidence 456666766666555544
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=4.1e-29 Score=251.44 Aligned_cols=340 Identities=10% Similarity=0.003 Sum_probs=225.2
Q ss_pred CCCCCCCCceEeeccC-cc-----eEEEEeeccCcchhhhhhhccc-ccccceee---eeeeEeecCccceEEEEEEcCC
Q 011160 3 DASNNNNNKRARTSVD-KA-----LVDVWLRELGQLSTRNFALRRR-ASEDLVLR---LGIYAKLDKHRGCVNTVSFNTD 72 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~-dg-----~v~~w~~~~g~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~ 72 (492)
.+.++|+|++|++++. |+ .|++||+.+|+........... .+...... ......+. ....|.+++||||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~SpD 119 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVDYQWSPD 119 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEECTT
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcceeEECCC
Confidence 4568999999999988 88 9999999988754210000000 00000000 00000000 0145789999999
Q ss_pred CCEEEEecCCCeEEEEECCCCc--eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC
Q 011160 73 GDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
|++|++++. +.|++||+.++. ....+ ..|...+.+++|+| +|++|++++ ++.|++|++.++..... ...+.
T Consensus 120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~~--~~~~~ 192 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQL--TADGS 192 (741)
T ss_dssp SSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEEC--CCCCC
T ss_pred CCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEEe--ccCCc
Confidence 999999886 899999999872 33444 56778899999999 999999887 46899999987654432 22222
Q ss_pred Cc----------------eEEEEEcCCCCcEEEEEcCCC---------------------------------cEEEEeCC
Q 011160 151 GR----------------AHKLAIEPGSPHVFYTCGEDG---------------------------------LVQHFDLR 181 (492)
Q Consensus 151 ~~----------------v~~i~~~~~~~~~l~~~~~dg---------------------------------~i~iwd~~ 181 (492)
.. +..++|+|||. .|++++.|+ .|.+||+.
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred cceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 21 47899999995 567766554 78899998
Q ss_pred C-CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-----CCCeEEEEecccccccCCCCCCCCccccCCCC
Q 011160 182 T-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-----SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (492)
Q Consensus 182 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (492)
+ ++........ .+...+..++| |+ ++.|++++ .+..|++||+.+++....
T Consensus 272 ~~~~~~~~~~~~--------~~~~~~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~-------------- 327 (741)
T 2ecf_A 272 EQAQTQWIDLGK--------EQDIYLARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRVL-------------- 327 (741)
T ss_dssp TTCCCEEECCCS--------CSSEEEEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEEE--------------
T ss_pred CCCceEEecCCC--------CcceEEEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEEE--------------
Confidence 8 7654332110 13446899999 98 56776554 357899999988753211
Q ss_pred cCCCcc-c---ceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccc
Q 011160 256 LIGDEQ-V---GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (492)
Q Consensus 256 ~~~~~~-~---~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (492)
...+. . .+..++|+|+|+++++++ ++.+.+|.++.. .
T Consensus 328 -~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-------------------------------------~ 369 (741)
T 2ecf_A 328 -AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-------------------------------------G 369 (741)
T ss_dssp -EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-------------------------------------S
T ss_pred -EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-------------------------------------C
Confidence 11111 1 345789999999888777 556677765421 1
Q ss_pred cCCceeeccccceeeeeE-EeecCCCcEEEE-eeccC--eEEEEecCC-CeeeEEEecCCceeEEEeecCCCCeEEEeeC
Q 011160 331 IAPQVYKGHRNCVTVKGV-NFFGPKCEYVVS-GSDCG--RIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (492)
Q Consensus 331 ~~~~~~~~~~~~~~v~~~-~~~s~~g~~l~s-g~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (492)
. ...+..+... +..+ .| +|+|+.|+. ++.++ .++||++.. +.....+.. ...+..++|+||+++|+....
T Consensus 370 ~-~~~l~~~~~~--v~~~~~~-s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 370 K-AAALTHGNWS--VDELLAV-DEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp C-EEESCCSSSC--EEEEEEE-ETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred C-eeeeeecceE--EEeEeEE-eCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEec
Confidence 2 3444555443 6666 46 999987754 55555 899999864 665667765 556889999999998876644
Q ss_pred C----CCEEEeccCCCC
Q 011160 406 E----SDIKILTPNAAD 418 (492)
Q Consensus 406 d----g~i~iw~~~~~~ 418 (492)
+ ..+.+|+...+.
T Consensus 445 ~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 445 NNSTPPQIELFRANGEK 461 (741)
T ss_dssp ETTEEEEEEEEETTSCE
T ss_pred CCCCCCeEEEEEcCCCe
Confidence 3 468888876543
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=9e-28 Score=249.54 Aligned_cols=331 Identities=11% Similarity=0.062 Sum_probs=238.4
Q ss_pred CCCCCCCCceEeeccCc------ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceE-------EEEEE
Q 011160 3 DASNNNNNKRARTSVDK------ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCV-------NTVSF 69 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~d------g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~ 69 (492)
.+.|+|||++||.++.+ ..|++|++.+|+. +.+..|...+ .+++|
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~----------------------~~lt~~~~~~~~~~~~~~~~~~ 114 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI----------------------KRITYFSGKSTGRRMFTDVAGF 114 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE----------------------EECCCCCEEEETTEECSEEEEE
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe----------------------EEcccCCCcccccccccccccC
Confidence 35689999999987543 4899999987652 4677888888 99999
Q ss_pred cCCCCEEEEecCC------CeEEEEECCCCceee----------------------------------------------
Q 011160 70 NTDGDILISGSDD------RRVILWDWKTERVKL---------------------------------------------- 97 (492)
Q Consensus 70 s~~~~~l~s~~~d------~~i~iwd~~~~~~~~---------------------------------------------- 97 (492)
+|||+++++++.+ ..|.+|++.++....
T Consensus 115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~ 194 (1045)
T 1k32_A 115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG 194 (1045)
T ss_dssp CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence 9999977887754 457888876554321
Q ss_pred ---eeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCc
Q 011160 98 ---SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (492)
Q Consensus 98 ---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~ 174 (492)
.+ .+|...+.++.|++ + .++++++.++.+.||.+....... ..+..|. .+..++|+|+|. .|+.+ .++.
T Consensus 195 ~~~~l-~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~~~-~~~~~~~SpDG~-~la~~-~~~~ 266 (1045)
T 1k32_A 195 AFKKI-VDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDL-RKHTSFT-DYYPRHLNTDGR-RILFS-KGGS 266 (1045)
T ss_dssp EEEEE-ECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSC-EECCCCC-SSCEEEEEESSS-CEEEE-ETTE
T ss_pred CeEEC-cCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcc-eEecCCC-CcceeeEcCCCC-EEEEE-eCCE
Confidence 11 34667788889987 6 677788888999999876432211 2244454 466789999995 55655 5899
Q ss_pred EEEEeCCCCCccceeecCCCC-CCCcceeecceEEEEEc-CCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccC
Q 011160 175 VQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIAID-PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (492)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 252 (492)
|++|++...... .+...... ......+...+.+++|+ |+ +..|++++ ++.+.+|++..++...
T Consensus 267 i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~~------------ 331 (1045)
T 1k32_A 267 IYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVLK------------ 331 (1045)
T ss_dssp EEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEEE------------
T ss_pred EEEecCCceEee-eeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceEE------------
Confidence 999999544322 22211000 00001133468899999 98 67777776 7899999987654211
Q ss_pred CCCcCCCccc-ceEEEEEcCCCCeeEeecCC-cEE-EEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcc
Q 011160 253 PPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIY-LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (492)
Q Consensus 253 ~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~-~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (492)
...+.. .+..++|+ +|+.|+.++++ .+. +|++.++.
T Consensus 332 ----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------------------------------------ 370 (1045)
T 1k32_A 332 ----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------------------------------------ 370 (1045)
T ss_dssp ----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------------------------------------
T ss_pred ----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------------------------------------
Confidence 122344 78999999 99988887754 677 88876531
Q ss_pred ccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCC--
Q 011160 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES-- 407 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-- 407 (492)
...+.+|... +..++| +|||++|++++.++.|++||+.+++....+.+|.+.+.+++|+|||++|++++.++
T Consensus 371 ---~~~l~~~~~~--~~~~~~-SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 371 ---AEKFEENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp ---EEECCCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred ---ceEecCCccc--eeeeEE-CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence 1223344443 788998 99999999999999999999999998888888999999999999999999887654
Q ss_pred --------CEEEeccCCCCCCcccCc
Q 011160 408 --------DIKILTPNAADRATLPTN 425 (492)
Q Consensus 408 --------~i~iw~~~~~~~~~~~~~ 425 (492)
.|++|++.+++...+..+
T Consensus 445 ~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred cccCCCCCeEEEEECCCCcEEEeeCC
Confidence 899999998775544433
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=1.3e-27 Score=240.02 Aligned_cols=315 Identities=8% Similarity=-0.029 Sum_probs=212.4
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccc---eEEEEEEcCCCCEEEEe
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISG 79 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~ 79 (492)
++.|+|+|+++++ +.||+|++||+.+|+.. ..+.+|.. .|.+++|||||++|+++
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------VLIEGKKIESLRAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------EEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------EEeccccccccccceEEECCCCCEEEEE
Confidence 5678999998776 67999999999988765 45556654 48999999999999998
Q ss_pred cCC---------CeEEEEECCCCceeeee--ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec
Q 011160 80 SDD---------RRVILWDWKTERVKLSF--HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (492)
Q Consensus 80 ~~d---------~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 148 (492)
+.+ +.|.+||+.+++. ..+ ..+|...+..++|+| +|+.|+.++. +.|++|++.++..... ...
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~--~~~ 152 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRV--VST 152 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEE--ECC
T ss_pred ecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEE--ecC
Confidence 764 7888999998875 223 134555689999999 9999999886 7999999988765443 233
Q ss_pred CCCc------------------eEEEEEcCCCCcEEEEEcCCC----------------------------------cEE
Q 011160 149 HQGR------------------AHKLAIEPGSPHVFYTCGEDG----------------------------------LVQ 176 (492)
Q Consensus 149 ~~~~------------------v~~i~~~~~~~~~l~~~~~dg----------------------------------~i~ 176 (492)
+... +.+++|+|||. .|++++.++ .|+
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~ 231 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH 231 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence 2222 37899999995 667665442 799
Q ss_pred EEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec----CCCeEEEEecccccccCCCCCCCCccccC
Q 011160 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----SDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (492)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 252 (492)
+||+.+++....+..... ...+...+..++|+|+ ++++++.. .+..|++||+.+++.....
T Consensus 232 ~~d~~~~~~~~~l~~~~~----~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~---------- 296 (723)
T 1xfd_A 232 VIGLNGPTHDLEMMPPDD----PRMREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKH---------- 296 (723)
T ss_dssp EEESSSSCCCEECCCCCC----GGGSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEE----------
T ss_pred EEECCCCceeEEeeCCcc----CCCccceeEEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEEE----------
Confidence 999988875444332110 0002346889999998 66776654 2367999999876532110
Q ss_pred CCCcCCCcccce----EEEEEcCCCCeeEee-c--CC------cEEEEec-CCCCCCCCCCCCCCCccccccccCCCCCC
Q 011160 253 PPNLIGDEQVGI----TGLAFSDQSELLVSY-N--DE------FIYLFTQ-DMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (492)
Q Consensus 253 ~~~~~~~~~~~i----~~~~~s~~~~~l~~~-~--~~------~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (492)
...+...+ ..++|+|+|+.|+.. + ++ .|++|+. .++..
T Consensus 297 ----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~------------------------ 348 (723)
T 1xfd_A 297 ----EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN------------------------ 348 (723)
T ss_dssp ----EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS------------------------
T ss_pred ----EeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc------------------------
Confidence 01111222 367999999977754 2 44 3666763 33210
Q ss_pred CCCCCCCCCccccCCceeeccccceeeee-EEeecCCCcEEEEeecc---CeEEEEecCCC--eeeEEEec---CCceeE
Q 011160 319 AASPSTANTDVRIAPQVYKGHRNCVTVKG-VNFFGPKCEYVVSGSDC---GRIFIWKKKGG--ELIRVIEA---DRHVVN 389 (492)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~s~~g~~l~sg~~d---g~i~iwd~~~~--~~~~~~~~---h~~~v~ 389 (492)
.....+..+... +.. +.| +|+|++|+..+.+ +.++||++... .....+.. |...+.
T Consensus 349 ------------~~~~~l~~~~~~--~~~~~~~-spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 413 (723)
T 1xfd_A 349 ------------DNIQSITSGDWD--VTKILAY-DEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYF 413 (723)
T ss_dssp ------------CCCCBSCCSSSC--EEEEEEE-ETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCC
T ss_pred ------------cceeEeecCCeE--EEeeeEE-cCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeE
Confidence 001222222121 333 577 9999999766554 78999998643 23344443 566789
Q ss_pred EEeecCCCCeEEEee
Q 011160 390 CIEPHPHSTVLASSG 404 (492)
Q Consensus 390 ~~~~s~~~~~l~s~~ 404 (492)
.++|+|++++|+...
T Consensus 414 ~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 414 SASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEc
Confidence 999999999877643
No 133
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-27 Score=207.08 Aligned_cols=207 Identities=12% Similarity=0.047 Sum_probs=147.8
Q ss_pred CCCCCCC----CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeee-------eeeEeecCccceEEEEEEcC
Q 011160 3 DASNNNN----NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-------GIYAKLDKHRGCVNTVSFNT 71 (492)
Q Consensus 3 ~~~~~~~----~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~ 71 (492)
.++++|+ ++.+++++. .+++|++.+|+++.... ...+..+++ +....+.+|...++.++|+|
T Consensus 116 sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~-----~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~ 188 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSG-----TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE 188 (356)
T ss_dssp EECC------CCEEEEEEEE--EEEEEEETTTEEEEEES-----SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred EEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecc-----cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence 4677888 888888763 36677776666553211 001111111 23356668888888999988
Q ss_pred ---CCCEEEEecCCCeEEEEECCCCceeeeeccCc---CcceEEEEecCCCCCceE------------EeecCCCcEEEE
Q 011160 72 ---DGDILISGSDDRRVILWDWKTERVKLSFHSGH---NDNVFQAKIMPFTDDRSI------------VTCAADGQVRHA 133 (492)
Q Consensus 72 ---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l------------~~~~~dg~v~iw 133 (492)
++.+|++|+.|++|+|||+.+++.+.++ .+| ...+.+++|+| ++.++ ++|+.|++|++|
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL-~g~~~~v~~v~~vafSp--dG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKM-HIDDSYQASVCHKAYSE--MGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCCEEEEE-ECCC---CCCEEEEEEE--TTEEEEEEC------------CCEEEEEE
T ss_pred cCCCCceEEEecCCCcEEEEECCCCcEEEEE-cCCCcceeeeEEEEECC--CCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 7799999999999999999999998888 443 34678889999 99876 567889999999
Q ss_pred ecccCCeeeeEEe---ecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecc-eEEE
Q 011160 134 QILERGGVETKLL---GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN-LNAI 209 (492)
Q Consensus 134 ~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~ 209 (492)
|..++..+....+ .+|...+.+..++ + .++++++.|++|+|||+.+++.+..+.. |... +.++
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~g----------H~~~vvs~v 332 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPP----------VSDQHWSFV 332 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECC----------C--CCCCEE
T ss_pred ECCCCEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecC----------CCCCeEEEE
Confidence 9988876554221 3565555544444 4 5789999999999999999999888763 2223 4468
Q ss_pred EEcCCCCceEEEecCCCeEEEEec
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDI 233 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~ 233 (492)
+|+|+ +.+|++|+.|++|+|||+
T Consensus 333 afSPD-G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGT-DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSS-SSEEEEECTTSCEEEEEE
T ss_pred EECCC-CCEEEEEECCCcEEEecC
Confidence 99998 789999999999999996
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.6e-25 Score=202.75 Aligned_cols=288 Identities=12% Similarity=0.083 Sum_probs=187.8
Q ss_pred CCCCCCCce-EeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC-
Q 011160 4 ASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD- 81 (492)
Q Consensus 4 ~~~~~~~~~-l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~- 81 (492)
+.|.+++++ +++++.++.|++||..++++. ..+..+...+ +++|+|++++|++++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~-~~~~s~dg~~l~~~~~~ 60 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL---------------------NQITLGYDFV-DTAITSDCSNVVVTSDF 60 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE---------------------EEEECCCCEE-EEEECSSSCEEEEEEST
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee---------------------eeEEccCCcc-eEEEcCCCCEEEEEeCC
Confidence 445555555 888889999999999988876 3444455666 9999999996665554
Q ss_pred CCeEEEEECCCCce-eeeeccCcCcceEEEEecCCCCCceEEeecCCC---cEEEEecccCCeeeeEEeecCCCceEEEE
Q 011160 82 DRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 82 d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~v~~i~ 157 (492)
++.|.+||+.+++. ...+ ..+..+..+++|+| ++++|+++..++ .|.+||+.+++.+.. +. ....+.+++
T Consensus 61 ~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~~~~~~~ 134 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKVVAI-QEGQSSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFIST--IP-IPYDAVGIA 134 (331)
T ss_dssp TCEEEEEECSSSSCEEEEE-EECSSCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEE--EE-CCTTEEEEE
T ss_pred CCeEEEEECCCCceeEEec-ccCCCCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEE--EE-CCCCccceE
Confidence 88999999998887 5554 45555665599999 999999655553 899999988766554 33 334568999
Q ss_pred EcCCCCcEEEEEcCCCc-EEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 158 IEPGSPHVFYTCGEDGL-VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
|+|++..++++...++. |.+|++.....+........ . ....+..++|+|++..+++++..++.|++||+.++
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~-----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-S-----GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-C-----SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-c-----CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99999656666666688 99999875432211100000 0 11124555555552223333444555555555433
Q ss_pred cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCC
Q 011160 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (492)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (492)
+..
T Consensus 209 ~~~----------------------------------------------------------------------------- 211 (331)
T 3u4y_A 209 ENI----------------------------------------------------------------------------- 211 (331)
T ss_dssp TSC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe-eccCeEEEEecCCCee--eEEEecC----Cce--
Q 011160 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGEL--IRVIEAD----RHV-- 387 (492)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg-~~dg~i~iwd~~~~~~--~~~~~~h----~~~-- 387 (492)
..+..+..+. .+..++| +|+|++|+++ ..++.|.+||+.+++. +..+..+ ...
T Consensus 212 --------------~~~~~~~~~~---~~~~~~~-spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 212 --------------TLLNAVGTNN---LPGTIVV-SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273 (331)
T ss_dssp --------------EEEEEEECSS---CCCCEEE-CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred --------------ceeeeccCCC---CCceEEE-CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc
Confidence 0011222221 1567888 9999977654 4578899999999887 4444433 222
Q ss_pred -eEEEeecCCCCeEEEee-CCCCEEEeccCCCCCC
Q 011160 388 -VNCIEPHPHSTVLASSG-IESDIKILTPNAADRA 420 (492)
Q Consensus 388 -v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~ 420 (492)
...++|+|++++|+.++ .++.|.+|++......
T Consensus 274 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 274 GANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp TCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred cccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 35689999999876555 4679999999876543
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=1.7e-26 Score=231.08 Aligned_cols=331 Identities=11% Similarity=0.059 Sum_probs=210.6
Q ss_pred CceEeeccCcceEEEEeeccCcch-hhhhhhcccccccceeeeeee-EeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLS-TRNFALRRRASEDLVLRLGIY-AKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+..+++++.|+ | +||+.+|+.+ ...+...... ..+... .....+...|.+++|+|| +.++.+. ++.|++
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~ 105 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLN-----ALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVG 105 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHH-----TTC-----------CCCEEEEETTT-TEEEEEE-TTEEEE
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhh-----hhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEE
Confidence 56677777788 8 9999998862 1100000000 000000 000112356999999999 6665553 599999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc-----CCeeeeEEeecCCCc----------
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----RGGVETKLLGKHQGR---------- 152 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~~~---------- 152 (492)
||+.+++.... ..+...+.+++|+| +|++|+++ .++.|++|++.+ ++.... ...+...
T Consensus 106 ~d~~~~~~~~l--~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 106 FDMLARKVTYL--FDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAVHQR 178 (706)
T ss_dssp EETTTTEEEEE--ECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCCGGG
T ss_pred EECCCCceEEc--cCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccchhhh
Confidence 99998876443 35667789999999 99999985 679999999987 654432 2222222
Q ss_pred ----eEEEEEcCCCCcEEEEEc---------------------------------CCCcEEEEeCCCCCccceeecCCCC
Q 011160 153 ----AHKLAIEPGSPHVFYTCG---------------------------------EDGLVQHFDLRTGAATELFTCRPID 195 (492)
Q Consensus 153 ----v~~i~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (492)
+.+++|+|+|. .|++++ .+..|++||+.+++........
T Consensus 179 e~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--- 254 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE--- 254 (706)
T ss_dssp CTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS---
T ss_pred hcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC---
Confidence 58899999995 667765 3467999999988754332110
Q ss_pred CCCcceeecceEEEEEcCCCCceEEEecCCC-----eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc
Q 011160 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (492)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 270 (492)
.+...+..++|+|+ ++.|++++.++ .|++||+.+++....... .........+..++|+
T Consensus 255 -----~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~----------~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 255 -----PKEKFLTNLSWSPD-ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV----------ETDKHYVEPLHPLTFL 318 (706)
T ss_dssp -----CTTCEEEEEEECTT-SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE----------EECSSCCCCCSCCEEC
T ss_pred -----CCceeEeeEEEECC-CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE----------ccCCCeECccCCceee
Confidence 03346899999998 67788776665 899999988721111000 0000001124568999
Q ss_pred C--CCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeee
Q 011160 271 D--QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG 347 (492)
Q Consensus 271 ~--~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 347 (492)
| +|++|++++ ++.+++|.++.. ......+..+... +..
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~-------------------------------------~~~~~~l~~~~~~--v~~ 359 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTT-------------------------------------GRLIRQVTKGEWE--VTN 359 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETT-------------------------------------SCEEEECCCSSSC--EEE
T ss_pred cCCCCEEEEEEccCCccEEEEEECC-------------------------------------CCEEEecCCCCeE--EEe
Confidence 9 999888887 557888876521 1223344444443 555
Q ss_pred -EEeecCCCcEEEEeec-cC----eEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCC----CCEEEeccCCC
Q 011160 348 -VNFFGPKCEYVVSGSD-CG----RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE----SDIKILTPNAA 417 (492)
Q Consensus 348 -~~~~s~~g~~l~sg~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 417 (492)
+.| +|+|+.|+.++. ++ .|+.|++.+++ ...+. |...+.+++|+|||++|+..+.+ +.|++|++.++
T Consensus 360 ~~~~-spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 360 FAGF-DPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEE-CTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eeEE-cCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 677 999998765544 44 77888887766 34444 66679999999999988876544 45999999877
Q ss_pred C
Q 011160 418 D 418 (492)
Q Consensus 418 ~ 418 (492)
+
T Consensus 437 ~ 437 (706)
T 2z3z_A 437 S 437 (706)
T ss_dssp E
T ss_pred e
Confidence 5
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.4e-25 Score=204.11 Aligned_cols=311 Identities=10% Similarity=0.104 Sum_probs=196.5
Q ss_pred ceEeeccCcceEEEEeec-cCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC-CeEEEE
Q 011160 11 KRARTSVDKALVDVWLRE-LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD-RRVILW 88 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~i~iw 88 (492)
.++++++.|+.|++|++. +++.. .... ..|...+.+++|+|++++|++++.+ +.|++|
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALT-------------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEE-------------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEE-------------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345555889999999996 33221 1122 2366788999999999988888876 999999
Q ss_pred ECC--CCce--eeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 89 DWK--TERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 89 d~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
++. ++.. +..+ ..+ ..+..++|+| ++++|++++ .++.|.+|++..+..............+.+++|+|++.
T Consensus 66 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 66 RIAPDDGALTFAAES-ALP-GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR 141 (343)
T ss_dssp EECTTTCCEEEEEEE-ECS-SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS
T ss_pred EecCCCCceeecccc-ccC-CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCC
Confidence 997 5553 2333 223 3789999999 999877665 48899999995322111111222334688999999995
Q ss_pred cEEEEEcCCCcEEEEeCCC-CCcccee--ecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc--ccc
Q 011160 164 HVFYTCGEDGLVQHFDLRT-GAATELF--TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKW 238 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~--~~~ 238 (492)
.+++++..++.|.+||+.+ ++..... ..... ....+..++|+|++..+++++..++.|.+|++.. ++.
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV-------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS-------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccccC-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 4444444889999999987 5433221 11100 1235778999998433455666899999999954 221
Q ss_pred cCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCC
Q 011160 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (492)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (492)
... ...............+..++|+|++++|+++. ++.|.+|++......
T Consensus 215 ~~~-------~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~--------------------- 266 (343)
T 1ri6_A 215 ECV-------QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV--------------------- 266 (343)
T ss_dssp EEE-------EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---------------------
T ss_pred EEE-------eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc---------------------
Confidence 000 00000000001134677899999998776443 568999998731000
Q ss_pred CCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee-ccCeEEEEec--CCCee--eEEEecCCceeEEE
Q 011160 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGGEL--IRVIEADRHVVNCI 391 (492)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~-~dg~i~iwd~--~~~~~--~~~~~~h~~~v~~~ 391 (492)
...+..+..+.. +..++| +|+|++|++++ .++.|.+|++ .+++. +..+... ....++
T Consensus 267 -------------~~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i 328 (343)
T 1ri6_A 267 -------------LSKEGFQPTETQ---PRGFNV-DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWV 328 (343)
T ss_dssp -------------EEEEEEEECSSS---CCCEEE-CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEE
T ss_pred -------------eEEeeeecCCCc---cceEEE-CCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeE
Confidence 122223333322 678888 99999888877 6899999954 46643 4445442 346677
Q ss_pred eecCCCC
Q 011160 392 EPHPHST 398 (492)
Q Consensus 392 ~~s~~~~ 398 (492)
+|.|+.+
T Consensus 329 ~~~~~~~ 335 (343)
T 1ri6_A 329 VVNAHEG 335 (343)
T ss_dssp EEEEEC-
T ss_pred EEEcccC
Confidence 7776543
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.5e-26 Score=231.18 Aligned_cols=293 Identities=13% Similarity=0.106 Sum_probs=207.3
Q ss_pred cceEEEEEEcCCCCEEEEecC-CC-----eEEEEECCCCceeeeeccCcC------------------------cceEEE
Q 011160 61 RGCVNTVSFNTDGDILISGSD-DR-----RVILWDWKTERVKLSFHSGHN------------------------DNVFQA 110 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~~v~~~ 110 (492)
...|.+++|+|||++|++++. |+ .|++||+.+++....+ ..+. ..+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457899999999999999998 88 8999999998875554 3332 237899
Q ss_pred EecCCCCCceEEeecCCCcEEEEecccCC--eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccce
Q 011160 111 KIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188 (492)
Q Consensus 111 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 188 (492)
+|+| +|++|++++. +.|++||+.++. .... +..|...+.+++|+|+|. .|+.++ ++.|++||+.+++....
T Consensus 115 ~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQ--LTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECT--TSSEEEEEET-TEEEEEESSSCSTTSCCB--CCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECC--CCCEEEEEeC-CcEEEEECCCCCcceEEE--cccCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEe
Confidence 9999 9999998886 899999998762 2222 667788899999999994 666665 46899999998765543
Q ss_pred eecCCCCCCCcc------eeecceEEEEEcCCCCceEEEecCCC---------------------------------eEE
Q 011160 189 FTCRPIDDRRNY------MTVVNLNAIAIDPRNANLFAVAGSDE---------------------------------YTR 229 (492)
Q Consensus 189 ~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~dg---------------------------------~v~ 229 (492)
..........+. .....+..++|+|+ ++.|++++.|+ .|+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 321100000000 00012477999998 67787776654 788
Q ss_pred EEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC------CcEEEEecCCCCCCCCCCCCC
Q 011160 230 LYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND------EFIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 230 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~ 302 (492)
+||+.+ ++.... .....+...+..++| |+|++|+.... ..|++||+.++.
T Consensus 267 ~~d~~~~~~~~~~-------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~--------- 323 (741)
T 2ecf_A 267 VISPAEQAQTQWI-------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ--------- 323 (741)
T ss_dssp EECSSTTCCCEEE-------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------
T ss_pred EEECCCCCceEEe-------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------
Confidence 889877 542110 001135678999999 99998886542 259999988742
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccc-e-eeeeEEeecCCCcEEEEeeccCeEEEEecC-CCeeeE
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-V-TVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIR 379 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~-~~~~~~ 379 (492)
....+..+... . .+..+.| +|||+++++++.+|.++||.+. ++. ..
T Consensus 324 -----------------------------~~~~~~~~~~~~~~~~~~~~~-spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 324 -----------------------------QRVLAHETSPTWVPLHNSLRF-LDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp -----------------------------EEEEEEEECSSCCCCCSCCEE-CTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred -----------------------------eEEEEEcCCCCcCCcCCceEE-CCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 22233333211 0 1457888 9999999999999987777764 455 77
Q ss_pred EEecCCceeEEE-eecCCCCeEE-EeeCCC--CEEEeccCC
Q 011160 380 VIEADRHVVNCI-EPHPHSTVLA-SSGIES--DIKILTPNA 416 (492)
Q Consensus 380 ~~~~h~~~v~~~-~~s~~~~~l~-s~~~dg--~i~iw~~~~ 416 (492)
.+..|...|..+ .|+|+++.|+ +++.++ .++||++..
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 788888888887 5999999775 445555 899999864
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=6.9e-26 Score=201.63 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=177.6
Q ss_pred eccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCC-C
Q 011160 15 TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-E 93 (492)
Q Consensus 15 t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~ 93 (492)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ +
T Consensus 17 ~~~~~~~i~~~d~~~~~~~----------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR----------------------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP 73 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE----------------------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC
T ss_pred CCCcceeEEEEeCCCCcee----------------------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC
Confidence 4567899999999977644 3445888999999999999999987 78999999998 7
Q ss_pred ceeeeeccCc-CcceEEEEecCCCCCceEEeec--CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc
Q 011160 94 RVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 94 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
+..... ..+ ...+.+++|+| ++++|++++ .++...||.+....... ..+..+ ..+..++|+|++..++++++
T Consensus 74 ~~~~~~-~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 74 SPEKVD-TGFATICNNDHGISP--DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp SCEECC-CTTCCCBCSCCEECT--TSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEE
T ss_pred CceEec-cccccccccceEECC--CCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEEC
Confidence 765444 444 46889999999 999999988 44566666654322222 223333 34889999999965555888
Q ss_pred CCCcEEEEeCC--CCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE-ecCCCeEEEEecccccccCCCCCCCC
Q 011160 171 EDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDEYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 171 ~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~ 247 (492)
.++.+.+|+++ ++... .+.. +...+.+++|+|+ +..|+. +..++.+++|++....
T Consensus 149 ~~~~~~l~~~~~~~~~~~-~~~~----------~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~---------- 206 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSGVET-RLTH----------GEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDG---------- 206 (297)
T ss_dssp ETTEEEEEEEETTTCCEE-ECCC----------SSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTS----------
T ss_pred CCCceEEEEEECCCCcce-Eccc----------CCCccccceECCC-CCEEEEEecCCCCccEEEECCCC----------
Confidence 89999999864 33221 1111 2335677777777 444443 3346677777664210
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (492)
T Consensus 207 -------------------------------------------------------------------------------- 206 (297)
T 2ojh_A 207 -------------------------------------------------------------------------------- 206 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCceeeccccceeeeeEEeecCCCcEEEEeecc-----------CeEEEEecCCCee--eEEEecCCceeEEEeec
Q 011160 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----------GRIFIWKKKGGEL--IRVIEADRHVVNCIEPH 394 (492)
Q Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d-----------g~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s 394 (492)
.....+..|.. .+..+.| +|+|++|++++.+ +.|++||+.+++. +..+.+|...+..++|+
T Consensus 207 ---~~~~~~~~~~~--~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 207 ---SSVERITDSAY--GDWFPHP-SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp ---SCEEECCCCSE--EEEEEEE-CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred ---CCcEEEecCCc--ccCCeEE-CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 00111222222 2566777 8888888777665 6799999988865 44455788889999999
Q ss_pred CCCCeEEEeeCCC
Q 011160 395 PHSTVLASSGIES 407 (492)
Q Consensus 395 ~~~~~l~s~~~dg 407 (492)
|++++|++++.+.
T Consensus 281 pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 281 PDGDEFAYVRYFP 293 (297)
T ss_dssp TTSSEEEEEEECC
T ss_pred CCCCEEEEEEecc
Confidence 9999998887654
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=5.5e-26 Score=236.15 Aligned_cols=332 Identities=10% Similarity=0.024 Sum_probs=237.4
Q ss_pred CCCCCCCCceEeeccCc------ceEEEEeeccCcchhhhhhh----------cccccc------------cceeee---
Q 011160 3 DASNNNNNKRARTSVDK------ALVDVWLRELGQLSTRNFAL----------RRRASE------------DLVLRL--- 51 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~d------g~v~~w~~~~g~~~~~~~~~----------~~~~~~------------~~~~~~--- 51 (492)
.+.|+|+|+++++++.+ ..|++|++.+++...-.... ++.++. +...++
T Consensus 111 ~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~ 190 (1045)
T 1k32_A 111 VAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE 190 (1045)
T ss_dssp EEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEE
T ss_pred cccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEE
Confidence 46789999987877754 35777888766543110000 000000 000000
Q ss_pred ---eeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCC-CceeeeeccCcCcceEEEEecCCCCCceEEeecCC
Q 011160 52 ---GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 52 ---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
.....+.+|.+.+.++.|+++ .++++++.++.++||.+.. +.....+ ..|. .+..++|+| +|+.|+++ .+
T Consensus 191 ~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~Sp--DG~~la~~-~~ 264 (1045)
T 1k32_A 191 VNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNT--DGRRILFS-KG 264 (1045)
T ss_dssp EETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEE--SSSCEEEE-ET
T ss_pred CCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcC--CCCEEEEE-eC
Confidence 223455789999999999988 6777888889999998653 3333444 3444 467789999 99999887 48
Q ss_pred CcEEEEecccCCeeeeEEeec-----------CCCceEEEEEc-CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCC
Q 011160 128 GQVRHAQILERGGVETKLLGK-----------HQGRAHKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (492)
+.|.+|++.. ..+. .+.. |...+.+++|+ |+|. .|++++ ++.|.+|++.++.......
T Consensus 265 ~~i~~~d~~~-~~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~~~~~~~----- 334 (1045)
T 1k32_A 265 GSIYIFNPDT-EKIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLKVPE----- 334 (1045)
T ss_dssp TEEEEECTTT-CCEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEECSC-----
T ss_pred CEEEEecCCc-eEee--eeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCceEEccC-----
Confidence 9999999843 2222 2333 34578999999 9994 566665 7899999998776433211
Q ss_pred CCCcceeec-ceEEEEEcCCCCceEEEecCCCeEE-EEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC
Q 011160 196 DRRNYMTVV-NLNAIAIDPRNANLFAVAGSDEYTR-LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (492)
Q Consensus 196 ~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 273 (492)
+.. .+..++|+ + +..|++++.++.+. +|++..++.. .+. .+...+..++|+|+|
T Consensus 335 ------~~~~~~~~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~~~~---------------~l~-~~~~~~~~~~~SpDG 390 (1045)
T 1k32_A 335 ------PLRIRYVRRGGD-T-KVAFIHGTREGDFLGIYDYRTGKAE---------------KFE-ENLGNVFAMGVDRNG 390 (1045)
T ss_dssp ------CSCEEEEEECSS-S-EEEEEEEETTEEEEEEEETTTCCEE---------------ECC-CCCCSEEEEEECTTS
T ss_pred ------CCcceEEeeeEc-C-CCeEEEEECCCceEEEEECCCCCce---------------Eec-CCccceeeeEECCCC
Confidence 223 68899999 7 67888888788888 8998765421 112 456789999999999
Q ss_pred CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeec
Q 011160 274 ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (492)
Q Consensus 274 ~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 352 (492)
++|++++ ++.|++||+.++ .....+.+|... +.+++| +
T Consensus 391 ~~la~~~~~~~v~~~d~~tg--------------------------------------~~~~~~~~~~~~--v~~~~~-S 429 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETG--------------------------------------KPTVIERSREAM--ITDFTI-S 429 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTC--------------------------------------CEEEEEECSSSC--CCCEEE-C
T ss_pred CEEEEECCCCeEEEEECCCC--------------------------------------ceEEeccCCCCC--ccceEE-C
Confidence 9999887 558999999874 223344456554 788998 9
Q ss_pred CCCcEEEEeeccC----------eEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCC
Q 011160 353 PKCEYVVSGSDCG----------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (492)
Q Consensus 353 ~~g~~l~sg~~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (492)
|||++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 9999999887654 99999999887 677788888899999999999999999988888887643
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=4.9e-26 Score=207.17 Aligned_cols=283 Identities=11% Similarity=0.119 Sum_probs=186.0
Q ss_pred EEEEecCCCeEEEEECC-CCceeeeeccCcCcceEEEEecCCCCCceEEeecCC-CcEEEEecc--cCCeeeeEEeecCC
Q 011160 75 ILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQIL--ERGGVETKLLGKHQ 150 (492)
Q Consensus 75 ~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~~--~~~~~~~~~~~~~~ 150 (492)
++++++.++.|++|++. ++.........+...+.+++|+| ++++|++++.+ +.|.+|++. ++.......+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 44555789999999985 33321111135677899999999 99988888776 999999997 44433333344333
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC---ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-CCC
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA---ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE 226 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg 226 (492)
.+..++|+|++..+++++..++.|.+||+..+. ....+. ....+.+++|+|+ ++.+++++ .++
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~s~d-g~~l~~~~~~~~ 151 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-----------GLDGCHSANISPD-NRTLWVPALKQD 151 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----------CCTTBCCCEECTT-SSEEEEEEGGGT
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-----------CCCCceEEEECCC-CCEEEEecCCCC
Confidence 789999999996444555568999999995332 222222 2234788999998 55555555 899
Q ss_pred eEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCC
Q 011160 227 YTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPV 303 (492)
Q Consensus 227 ~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~ 303 (492)
.|++||+.+ ++..... ...........+..++|+|++++|++++ ++.|.+|++........
T Consensus 152 ~v~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~------ 215 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQD----------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE------ 215 (343)
T ss_dssp EEEEEEECTTSCEEEEE----------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE------
T ss_pred EEEEEEecCCCceeeec----------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE------
Confidence 999999986 4321100 0000111234678899999999765544 56899999864210000
Q ss_pred CccccccccCCCCCCCCCCCCCCCccccCCceee-ccccceeeeeEEeecCCCcEEE-EeeccCeEEEEecC----CCee
Q 011160 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKK----GGEL 377 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~g~~l~-sg~~dg~i~iwd~~----~~~~ 377 (492)
.......+. ++.....+..++| +|+|++|+ ++..++.|++|++. ..+.
T Consensus 216 -------------------------~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 216 -------------------------CVQTLDMMPENFSDTRWAADIHI-TPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp -------------------------EEEEEECSCTTCCSCCCEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred -------------------------EEeeccccCccccccCCccceEE-CCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 000000011 1111122567888 99998877 45578999999998 3345
Q ss_pred eEEEecCCceeEEEeecCCCCeEEEee-CCCCEEEeccC
Q 011160 378 IRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN 415 (492)
Q Consensus 378 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 415 (492)
+..+..+.. +..++|+|++++|++++ .++.|.+|+++
T Consensus 270 ~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 270 EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 556665555 89999999999888777 68999999654
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=1.6e-25 Score=203.32 Aligned_cols=279 Identities=11% Similarity=0.023 Sum_probs=199.9
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-Cccc-eEEEEEEcCCCCEE-EEecCCCeEEE
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRG-CVNTVSFNTDGDIL-ISGSDDRRVIL 87 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~s~~~~~l-~s~~~d~~i~i 87 (492)
+++++++.++.|++||..+++.+ ..+. ++.. .+..++|+|+++++ ++++.++.|.+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 60 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD---------------------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE---------------------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEE---------------------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEE
Confidence 57899999999999999988766 3333 2221 47789999999765 56667889999
Q ss_pred EECCCCceeeeeccCc----CcceEEEEecCCCCCceEEeec------------CCCcEEEEecccCCeeeeEEeecCCC
Q 011160 88 WDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCA------------ADGQVRHAQILERGGVETKLLGKHQG 151 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~------------~dg~v~iw~~~~~~~~~~~~~~~~~~ 151 (492)
||+.+++.+..+..++ ...+.+++|+| ++++|++++ .++.|.+||+.+++.... +. ...
T Consensus 61 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~ 135 (337)
T 1pby_B 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--FE-APR 135 (337)
T ss_dssp EETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--EE-CCS
T ss_pred EECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEEecccccccccccccCceEEEEECCCCcEEEE--Ee-CCC
Confidence 9999998876663332 22677899999 999888885 579999999987665543 33 245
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC-----
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE----- 226 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----- 226 (492)
.+.+++|+|++. .|+++ ++.|.+||+.+++....+..... . ..+.|+|++..+++++..++
T Consensus 136 ~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--------~---~~~~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 136 QITMLAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSW--------E---AETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp SCCCEEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTT--------T---TTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred CcceeEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeecccc--------C---CCceeCCCccEEeeeccCCCceeee
Confidence 678899999995 45555 68899999999887655542210 0 12267887433333333333
Q ss_pred ------------------eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEe
Q 011160 227 ------------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (492)
Q Consensus 227 ------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d 288 (492)
.|.+||+.+++.. .. ....+...+.+++|+|++++|+++ ++.|++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~-------------~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d 266 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR-------------EVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFD 266 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE-------------EEEECSSCEEEEEECTTSSEEEEE-ESEEEEEE
T ss_pred eeccccccccccccccccceEEEeCCCCCce-Ee-------------ecCCCCCceeeEEECCCCCEEEEe-CCeEEEEE
Confidence 4688998876532 10 011233567889999999998888 68999999
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEE
Q 011160 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~ 368 (492)
+.++ +....+..+.. +.+++| +|+|++|++++.++.|+
T Consensus 267 ~~~~--------------------------------------~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 267 LEKN--------------------------------------ASIKRVPLPHS---YYSVNV-STDGSTVWLGGALGDLA 304 (337)
T ss_dssp TTTT--------------------------------------EEEEEEECSSC---CCEEEE-CTTSCEEEEESBSSEEE
T ss_pred CCCC--------------------------------------cCcceecCCCc---eeeEEE-CCCCCEEEEEcCCCcEE
Confidence 8763 22233332222 678888 99999999999999999
Q ss_pred EEecCCCeeeEEEecCCc
Q 011160 369 IWKKKGGELIRVIEADRH 386 (492)
Q Consensus 369 iwd~~~~~~~~~~~~h~~ 386 (492)
+||+.+++.+..+..+.+
T Consensus 305 v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 305 AYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEETTTCCEEEEEECGGG
T ss_pred EEECcCCcEEEEEEcCCC
Confidence 999999999988876543
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=3.1e-25 Score=201.32 Aligned_cols=271 Identities=8% Similarity=0.044 Sum_probs=195.6
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCcCc-ceEEEEecCCCCCceE-EeecCCCcEEEEecccCCeeeeEEeec---
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGK--- 148 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~--- 148 (492)
++|++++.++.|.+||+.+++.+..+..++.. .+..++|+| +++.+ +++..++.|.+||+.+++.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 47899999999999999999887777433322 478999999 98765 556668899999998877665433322
Q ss_pred CCCceEEEEEcCCCCcEEEEEc------------CCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 149 HQGRAHKLAIEPGSPHVFYTCG------------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 149 ~~~~v~~i~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
|...+.+++|+|++. .++++. .++.|.+||+.+++....+.. ...+..++|+|+ +
T Consensus 80 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~d-g 146 (337)
T 1pby_B 80 RVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARD-G 146 (337)
T ss_dssp EEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTT-S
T ss_pred ccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCC-C
Confidence 122577899999995 566664 579999999998877665542 224677899998 5
Q ss_pred ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC-------------
Q 011160 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE------------- 282 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~------------- 282 (492)
++|+++ ++.|++||+.+++......... .... +.|+|+++.|+... .+
T Consensus 147 ~~l~~~--~~~i~~~d~~~~~~~~~~~~~~-------------~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPEAGTLVEDKPIQS-------------WEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp SCEEEE--SSSEEEEETTTTEEEEEECSTT-------------TTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred CEEEEe--CCeEEEEECCCCcEeeeeeccc-------------cCCC---ceeCCCccEEeeeccCCCceeeeeeccccc
Confidence 666666 6889999998876543211100 0111 26788887665544 22
Q ss_pred -----------cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEee
Q 011160 283 -----------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (492)
Q Consensus 283 -----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (492)
.|.+||+.++.. ....+..+... +.+++|
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~-------------------------------------~~~~~~~~~~~--~~~~~~- 248 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEM-------------------------------------AMREVRIMDVF--YFSTAV- 248 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCE-------------------------------------EEEEEEECSSC--EEEEEE-
T ss_pred cccccccccccceEEEeCCCCCc-------------------------------------eEeecCCCCCc--eeeEEE-
Confidence 356777765321 11222333322 677888
Q ss_pred cCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 352 s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+|+|++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++|++.+++..
T Consensus 249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp CTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 9999999988 799999999999988887754 45789999999999998889999999999887654
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=5e-24 Score=194.73 Aligned_cols=278 Identities=11% Similarity=0.073 Sum_probs=203.0
Q ss_pred ccceEEEEEEcCCCCEEEEecC-------CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEE
Q 011160 60 HRGCVNTVSFNTDGDILISGSD-------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVR 131 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~ 131 (492)
....+..++|+|++++|++++. ++.|.+||..+++.+..+. ....+..++|+| ++++++ +...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~--dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN--TTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET--TTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC--CCCEEEEEecCCCEEE
Confidence 3456789999999998888774 5689999999998877773 334578899999 988555 556679999
Q ss_pred EEecccCCeeeeEEeecCC-------CceEEEEEcCCCCcEEEEE-cCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 132 HAQILERGGVETKLLGKHQ-------GRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
+||..+++........... ..+.+++|+|++..++++. +.++.|.+||+.+++....+.. ..
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~----------~~ 184 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN----------TG 184 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC----------CC
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC----------CC
Confidence 9999888766553221111 1278899999996444444 3578999999999887766542 12
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--C
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D 281 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~ 281 (492)
..+..++|+|+ ++.+++++.++.|.+||+.+++.......+ ..++...+..++|+|++++|++++ +
T Consensus 185 ~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 185 KMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLL-----------DDGKEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp TTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECC-----------CSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred CccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcC-----------CCCCCcccceEEECCCCCEEEEEeCCC
Confidence 23678899998 678888888999999999887654332110 112345678899999999776665 3
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe
Q 011160 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (492)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg 361 (492)
+.|.+||..++. ....+.... ...++| +|+|++++++
T Consensus 253 ~~v~~~d~~~~~--------------------------------------~~~~~~~~~----~~~~~~-s~dg~~l~v~ 289 (353)
T 3vgz_A 253 AEVLVVDTRNGN--------------------------------------ILAKVAAPE----SLAVLF-NPARNEAYVT 289 (353)
T ss_dssp SEEEEEETTTCC--------------------------------------EEEEEECSS----CCCEEE-ETTTTEEEEE
T ss_pred CEEEEEECCCCc--------------------------------------EEEEEEcCC----CceEEE-CCCCCEEEEE
Confidence 589999997642 222333222 246777 9999966555
Q ss_pred e-ccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCC
Q 011160 362 S-DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES 407 (492)
Q Consensus 362 ~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 407 (492)
+ .++.|.+||+.+++.+..+..+ ..+..++|+|++++|+.+..++
T Consensus 290 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 290 HRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred ECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 4 6899999999999999888765 4689999999999777766554
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=8.8e-25 Score=213.35 Aligned_cols=272 Identities=14% Similarity=0.068 Sum_probs=196.1
Q ss_pred ccceEEEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC---CCcEEEEec
Q 011160 60 HRGCVNTVSFNTDGDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQI 135 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~ 135 (492)
+..+|++++|+|||++||+++. ||+++||++.+++. ..+...+...+..++|+| + +.+++++. +....+|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEEE
Confidence 3568999999999999999887 99999999976654 444333446899999999 8 77777664 455677766
Q ss_pred cc--CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 136 LE--RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 136 ~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
.. ...... +... ..+...+|+|++..++++.+.++.+.+||+.+++...... +. . .+++|+|
T Consensus 96 ~~~~~g~~~~--l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-----------~~-~-~~~~~sp 159 (582)
T 3o4h_A 96 NTSRPGEEQR--LEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-----------LP-G-FGFVSDI 159 (582)
T ss_dssp ETTSTTCCEE--CTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------ES-S-CEEEEEE
T ss_pred eccCCCcccc--ccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------CC-C-ceEEECC
Confidence 54 322221 3222 2344668888886655555555666699999887654433 11 1 7889999
Q ss_pred CCCceEEEecCC----CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC--cEEE
Q 011160 214 RNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYL 286 (492)
Q Consensus 214 ~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~--~i~~ 286 (492)
+ +++|++++.+ +.|++||+.+++.. ....+...+..++|+|||++|+++. ++ .|++
T Consensus 160 D-G~~la~~~~~~~~~~~i~~~d~~~g~~~----------------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 160 R-GDLIAGLGFFGGGRVSLFTSNLSSGGLR----------------VFDSGEGSFSSASISPGMKVTAGLETAREARLVT 222 (582)
T ss_dssp E-TTEEEEEEEEETTEEEEEEEETTTCCCE----------------EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred C-CCEEEEEEEcCCCCeEEEEEcCCCCCce----------------EeecCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence 8 7888877766 78999999876521 2234566789999999999999665 45 6999
Q ss_pred EecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEE--------eecCCCcEE
Q 011160 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN--------FFGPKCEYV 358 (492)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~s~~g~~l 358 (492)
||+.++.. . .+.+|... +..+. | +|||.++
T Consensus 223 ~d~~~~~~--------------------------------------~-~~~~~~~~--~~~~~~~~~~~~~~-spdg~~~ 260 (582)
T 3o4h_A 223 VDPRDGSV--------------------------------------E-DLELPSKD--FSSYRPTAITWLGY-LPDGRLA 260 (582)
T ss_dssp ECTTTCCE--------------------------------------E-ECCCSCSH--HHHHCCSEEEEEEE-CTTSCEE
T ss_pred EcCCCCcE--------------------------------------E-EccCCCcC--hhhhhhccccceeE-cCCCcEE
Confidence 99887421 1 33344332 34444 7 9999999
Q ss_pred EEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCC---CEEEeccCC
Q 011160 359 VSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNA 416 (492)
Q Consensus 359 ~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~ 416 (492)
++++.+|.+++|++ |+... .+.+.|.+++|+ +++++++++.+. .+.+|+..+
T Consensus 261 ~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999999 66554 345679999999 999999888774 477788764
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=2.5e-25 Score=223.32 Aligned_cols=299 Identities=11% Similarity=0.077 Sum_probs=197.5
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCc---ceEEEEecCCCCCceEEeecCC---------CcE
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAAD---------GQV 130 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~~~~~d---------g~v 130 (492)
.+.+++|+|||+++++ +.||+|++||+.+++....+ ..|.. .|.+++|+| +|++|++++.+ +.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECC--CCCEEEEEecCccceeecceeeE
Confidence 4678899999997776 78999999999998876555 55554 499999999 99999998764 788
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCC-CCcce-------e
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYM-------T 202 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~-------~ 202 (492)
.+||+.++..........|...+..++|+|+|. .|+.++. +.|++||+.+++............ ..++. .
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEECCCCceEeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 899998876533222234555688999999995 5666665 799999999887655443211000 00000 0
Q ss_pred ecceEEEEEcCCCCceEEEecCCC----------------------------------eEEEEecccccccCCCCCCCCc
Q 011160 203 VVNLNAIAIDPRNANLFAVAGSDE----------------------------------YTRLYDIRKYKWDGSTDFGQPA 248 (492)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg----------------------------------~v~i~d~~~~~~~~~~~~~~~~ 248 (492)
...+.+++|+|+ ++.|++++.++ .|++||+.+++....+.
T Consensus 172 ~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~----- 245 (723)
T 1xfd_A 172 LKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM----- 245 (723)
T ss_dssp SSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC-----
T ss_pred ccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee-----
Confidence 012378999998 67777776442 78888887765211100
Q ss_pred cccCCCCcCCCcccceEEEEEcCCCCeeEeec-C----CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
.......+...+..++|+|||++|++.. . ..|++||+.++.
T Consensus 246 ----~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~------------------------------ 291 (723)
T 1xfd_A 246 ----PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV------------------------------ 291 (723)
T ss_dssp ----CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC------------------------------
T ss_pred ----CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc------------------------------
Confidence 0001112356789999999999887654 2 259999987742
Q ss_pred CCCCccccCCceeecc-cccee--eeeEEeecCCCcEEEE--eeccC------eEEEEe-cCCCe--eeEEEecCCceeE
Q 011160 324 TANTDVRIAPQVYKGH-RNCVT--VKGVNFFGPKCEYVVS--GSDCG------RIFIWK-KKGGE--LIRVIEADRHVVN 389 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~-~~~~~--v~~~~~~s~~g~~l~s--g~~dg------~i~iwd-~~~~~--~~~~~~~h~~~v~ 389 (492)
....+..+ ..... ...+.| +|||++|+. +..++ .|++|| ...++ +...+..+...+.
T Consensus 292 --------~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 362 (723)
T 1xfd_A 292 --------CTKKHEDESEAWLHRQNEEPVF-SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (723)
T ss_dssp --------EEEEEEEECSSCCCCCCCCCEE-CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred --------ceEEEEeccCCEEeccCCCceE-cCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence 22222222 11100 136777 999997775 44566 577788 44444 1445543333444
Q ss_pred E-EeecCCCCeEEEeeCC---CCEEEeccCC
Q 011160 390 C-IEPHPHSTVLASSGIE---SDIKILTPNA 416 (492)
Q Consensus 390 ~-~~~s~~~~~l~s~~~d---g~i~iw~~~~ 416 (492)
. ++|+|||+.|+..+.+ +.+++|++..
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 4 7999999998766555 7899999864
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=7e-24 Score=193.41 Aligned_cols=287 Identities=9% Similarity=0.005 Sum_probs=197.8
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCcc-ceEEEEEEcCCCCEE-EEecC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDIL-ISGSD 81 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l-~s~~~ 81 (492)
+.+++++.++++++.++.|++||..+++.+ ..+..+. ..+..++|+|+++++ +++..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVY---------------------KSCVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEE---------------------EEEECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEE---------------------EEEecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788899999999999999999988766 3343322 246789999999865 55667
Q ss_pred CCeEEEEECCCCceeeeeccCc-----CcceEEEEecCCCCCceEEeecCC------------CcEEEEecccCCeeeeE
Q 011160 82 DRRVILWDWKTERVKLSFHSGH-----NDNVFQAKIMPFTDDRSIVTCAAD------------GQVRHAQILERGGVETK 144 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~d------------g~v~iw~~~~~~~~~~~ 144 (492)
++.|.+||+.+++.+..+...+ ...+.+++|+| ++++|++++.+ +.|.+||+.+++.....
T Consensus 64 ~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 8999999999988776663233 23478899999 99999988865 89999999875433221
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC--------------CcceeecceEEEE
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR--------------RNYMTVVNLNAIA 210 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~ 210 (492)
....+...+.+++|+|++. + ++++. .|.+||+.+++....+........ ...........++
T Consensus 142 ~~~~~~~~~~~~~~s~dg~-l-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFPMPRQVYLMRAADDGS-L-YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEECCSSCCCEEECTTSC-E-EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eeccCCCcccceeECCCCc-E-EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 1223445688999999995 4 44443 499999999887665543210000 0000011344566
Q ss_pred EcCCCC----------ceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC-CCCeeEee
Q 011160 211 IDPRNA----------NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSY 279 (492)
Q Consensus 211 ~~p~~~----------~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~ 279 (492)
+++++. .++......+.+++|++.. ....+..++|+| ++++++++
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~sp~dg~~l~~~ 273 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------------------------LTELYFTGLRSPKDPNQIYGV 273 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEE------------------------CSSCEEEEEECSSCTTEEEEE
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEeccccc------------------------CCCcceeeEecCCCCCEEEEE
Confidence 765421 1222334455666665532 234678999999 99999888
Q ss_pred cCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEE
Q 011160 280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (492)
Q Consensus 280 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~ 359 (492)
++.|.+||+.++ +....+..... +.+++| +|+|++|+
T Consensus 274 -~~~v~~~d~~~~--------------------------------------~~~~~~~~~~~---~~~~~~-s~dg~~l~ 310 (349)
T 1jmx_B 274 -LNRLAKYDLKQR--------------------------------------KLIKAANLDHT---YYCVAF-DKKGDKLY 310 (349)
T ss_dssp -ESEEEEEETTTT--------------------------------------EEEEEEECSSC---CCEEEE-CSSSSCEE
T ss_pred -cCeEEEEECccC--------------------------------------eEEEEEcCCCC---ccceEE-CCCCCEEE
Confidence 779999998763 22233332222 567888 99999988
Q ss_pred EeeccCeEEEEecCCCeeeEEEecC
Q 011160 360 SGSDCGRIFIWKKKGGELIRVIEAD 384 (492)
Q Consensus 360 sg~~dg~i~iwd~~~~~~~~~~~~h 384 (492)
+++.++.|++||+.+++.+..+..+
T Consensus 311 ~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 311 LGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EESBSSEEEEEETTTTEEEEEEECS
T ss_pred EecCCCeEEEEeccccceeeeeecC
Confidence 8888999999999999998888655
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.7e-24 Score=216.53 Aligned_cols=315 Identities=9% Similarity=0.047 Sum_probs=204.8
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+.++|+ ++++.+. ++.|++||+.+++.. .+..|.+.+.+++|+|||++|+++ .+
T Consensus 86 ~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~----------------------~l~~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 86 RTLDAGR-GLVVLFT-QGGLVGFDMLARKVT----------------------YLFDTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp EEEETTT-TEEEEEE-TTEEEEEETTTTEEE----------------------EEECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred eEEECCC-CeEEEEE-CCEEEEEECCCCceE----------------------EccCCcccccCCcCCCCCCEEEEE-EC
Confidence 4567899 5555554 599999999877643 234466778899999999999995 67
Q ss_pred CeEEEEECCC-----CceeeeeccCcCcc--------------eEEEEecCCCCCceEEeec------------------
Q 011160 83 RRVILWDWKT-----ERVKLSFHSGHNDN--------------VFQAKIMPFTDDRSIVTCA------------------ 125 (492)
Q Consensus 83 ~~i~iwd~~~-----~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~l~~~~------------------ 125 (492)
+.|++|++.+ ++..... ..+... +.+++|+| +|++|++++
T Consensus 141 ~~i~v~~~~~~~~~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp TEEEEEECBCTTSCCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred CeEEEEecCcccccCCCcEEec-cCCCCCeEcccchhhhhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCC
Confidence 9999999988 7664433 233332 48899999 999999887
Q ss_pred ---------------CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC-----cEEEEeCCCCCc
Q 011160 126 ---------------ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAA 185 (492)
Q Consensus 126 ---------------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 185 (492)
.+..|++||+.++..........|...+.+++|+|++. .|++++.++ .|++||+.+++.
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRF 296 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCce
Confidence 44679999998776543321225667899999999994 667766665 899999999843
Q ss_pred cceeecCCCCCCCcceeecceEEEEEcC--CCCceEEEecCCCeEEEEecc-cccccCCCCCCCCccccCCCCcCCCccc
Q 011160 186 TELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (492)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (492)
...+...... . ....+..++|+| + +.++++++.++.+++|.+. .++.. .....+..
T Consensus 297 ~~~~~~~~~~---~--~~~~~~~~~~sp~~d-g~~l~~~~~~g~~~l~~~~~~~~~~---------------~~l~~~~~ 355 (706)
T 2z3z_A 297 VRTLFVETDK---H--YVEPLHPLTFLPGSN-NQFIWQSRRDGWNHLYLYDTTGRLI---------------RQVTKGEW 355 (706)
T ss_dssp EEEEEEEECS---S--CCCCCSCCEECTTCS-SEEEEEECTTSSCEEEEEETTSCEE---------------EECCCSSS
T ss_pred eeEEEEccCC---C--eECccCCceeecCCC-CEEEEEEccCCccEEEEEECCCCEE---------------EecCCCCe
Confidence 3332211000 0 001245789999 8 6789999999999999876 22211 11122445
Q ss_pred ceEE-EEEcCCCCeeEeec-C-C----cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCce
Q 011160 263 GITG-LAFSDQSELLVSYN-D-E----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV 335 (492)
Q Consensus 263 ~i~~-~~~s~~~~~l~~~~-~-~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (492)
.+.. ++|+|+++.|+.++ + + .|+.|+..++. ...
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---------------------------------------~~~ 396 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---------------------------------------TKD 396 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---------------------------------------CEE
T ss_pred EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---------------------------------------cee
Confidence 5666 89999998776554 3 2 45666655431 122
Q ss_pred eeccccceeeeeEEeecCCCcEEEEeecc----CeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCC--CE
Q 011160 336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDC----GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES--DI 409 (492)
Q Consensus 336 ~~~~~~~~~v~~~~~~s~~g~~l~sg~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~i 409 (492)
+. +... +.+++| +|+|++|+....+ +.|++||+.+++ ...+ .+...+....|.+.....+ -..|| .+
T Consensus 397 l~-~~~~--~~~~~~-spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~g~~~~ 469 (706)
T 2z3z_A 397 LT-PESG--MHRTQL-SPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLL-EAKNPDTGYAMPEIRTGTI-MAADGQTPL 469 (706)
T ss_dssp SC-CSSS--EEEEEE-CTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEE-ECC------CCCCEEEEEE-ECTTSSSEE
T ss_pred cc-CCCc--eEEEEE-CCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeec-cccchhhhcCCCCcEEEEE-EcCCCCEEE
Confidence 22 2222 678888 9999998876544 569999998887 4333 3444455555544333333 23344 45
Q ss_pred EEec
Q 011160 410 KILT 413 (492)
Q Consensus 410 ~iw~ 413 (492)
..|-
T Consensus 470 ~~~~ 473 (706)
T 2z3z_A 470 YYKL 473 (706)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.4e-23 Score=191.12 Aligned_cols=290 Identities=10% Similarity=0.110 Sum_probs=185.4
Q ss_pred CCCeEEEEECC--CCceeeeeccCcCcceEEEEecCCCCCceEEeecC---CCcEEEEecccCCeeeeEEeecCCCceEE
Q 011160 81 DDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHK 155 (492)
Q Consensus 81 ~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~v~~ 155 (492)
.++.|.+|.++ +++........+...+..++|+| +++ |++++. ++.|.+|++..+.......+..+...+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp--dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA--KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT--TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc--CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 35567777654 45543322234556788899999 999 555544 68999999976654333334557778899
Q ss_pred EEEcCCCCcEEEEEc-CCCcEEEEeCCCCCccceeecCCCCCC--CcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 156 LAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDR--RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 156 i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
++|+|++. +|++++ .++.|.+|++........+........ ........+.+++|+|++ +++++...++.|++|+
T Consensus 91 ~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 91 VAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEE
T ss_pred EEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEE
Confidence 99999995 555555 789999999963322222111100000 000012347889999984 5777777889999999
Q ss_pred cc-cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccc
Q 011160 233 IR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (492)
Q Consensus 233 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (492)
+. .+++... ..........+..++|+|+|++|++++ ++.+.+|++......
T Consensus 169 ~~~~g~~~~~------------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-------------- 222 (347)
T 3hfq_A 169 VSDAGQLSEQ------------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-------------- 222 (347)
T ss_dssp ECTTSCEEEE------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE--------------
T ss_pred ECCCCcEEEe------------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--------------
Confidence 98 3322110 000111123567899999999766654 557999998741100
Q ss_pred cccCCCCCCCCCCCCCCCccccCCceeecccc----ceeeeeEEeecCCCcEEE-EeeccCeEEEEecC---CCeeeEEE
Q 011160 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRN----CVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKK---GGELIRVI 381 (492)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~s~~g~~l~-sg~~dg~i~iwd~~---~~~~~~~~ 381 (492)
......+..... ...+..++| +|+|++|+ +...++.|.+|++. ..+.+..+
T Consensus 223 --------------------~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 281 (347)
T 3hfq_A 223 --------------------FTQLGIVKTIPADYTAHNGAAAIRL-SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI 281 (347)
T ss_dssp --------------------EEEEEEEESSCTTCCSCCEEEEEEE-CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE
T ss_pred --------------------eEEeeeeeecCCCCCCCCcceeEEE-CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE
Confidence 001111111110 123678888 99999875 55568999999996 33556667
Q ss_pred ecCCceeEEEeecCCCCeEEEeeCC-CCEEEe--ccCCCCCCcc
Q 011160 382 EADRHVVNCIEPHPHSTVLASSGIE-SDIKIL--TPNAADRATL 422 (492)
Q Consensus 382 ~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iw--~~~~~~~~~~ 422 (492)
..+...+..++|+|||++|++++.+ +.|.+| +.+++++..+
T Consensus 282 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 282 STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 7777778999999999988887764 899999 5556665543
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=217.16 Aligned_cols=332 Identities=8% Similarity=-0.049 Sum_probs=214.8
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccc---eEEEEEEcCCCCEEEEe
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISG 79 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~ 79 (492)
++.++|++++++++ .|+.|++||+.+|+.. ..+.+|.. .|.+++|||||++|+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------~~~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------TILSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------EEECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------EEEccccccccceeeEEECCCCCeEEEE
Confidence 45688999666655 5999999999988755 33444443 38899999999999988
Q ss_pred cC---------CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC
Q 011160 80 SD---------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 80 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
+. ++.|++||+.+++.+... .....+..++|+| +|+.|+.+. ++.|++|++.++..... ...++.
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~ 151 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRE 151 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBT
T ss_pred ecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCc
Confidence 76 789999999988763111 1124688999999 999999886 78999999987765432 112222
Q ss_pred Cce-----------------EEEEEcCCCCcEEEEEcCCC----------------------------------cEEEEe
Q 011160 151 GRA-----------------HKLAIEPGSPHVFYTCGEDG----------------------------------LVQHFD 179 (492)
Q Consensus 151 ~~v-----------------~~i~~~~~~~~~l~~~~~dg----------------------------------~i~iwd 179 (492)
..| .+++|+|||. .|++++.|. .|++||
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 222 4899999994 677766542 788999
Q ss_pred CCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC----CeEEEEe----cccccccCCCCCCCCcccc
Q 011160 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYD----IRKYKWDGSTDFGQPADYF 251 (492)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~v~i~d----~~~~~~~~~~~~~~~~~~~ 251 (492)
+.+++....+.........+ +...+..++|+|+ +.++++.... ..|.+|| +.+++......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~-------- 299 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIAS--SDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE-------- 299 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHT--SCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE--------
T ss_pred CCCCCccceeEccCCccCCC--CcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe--------
Confidence 98876531111100000001 3446899999998 6777664322 3488899 76665321100
Q ss_pred CCCCcCCCcccceE-----EEEEcCCCCeeEe--ec-CC--cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 011160 252 CPPNLIGDEQVGIT-----GLAFSDQSELLVS--YN-DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (492)
Q Consensus 252 ~~~~~~~~~~~~i~-----~~~~s~~~~~l~~--~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (492)
.....+...+. .+.|+|+|+.|+. .. ++ .|++|++.++.
T Consensus 300 ---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---------------------------- 348 (719)
T 1z68_A 300 ---HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---------------------------- 348 (719)
T ss_dssp ---EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----------------------------
T ss_pred ---cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----------------------------
Confidence 00022334444 7899999986654 32 33 47777776531
Q ss_pred CCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc-----CeEEEEecCC--Ce-eeEEEec----CCceeE
Q 011160 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKG--GE-LIRVIEA----DRHVVN 389 (492)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d-----g~i~iwd~~~--~~-~~~~~~~----h~~~v~ 389 (492)
...+..+... +..+.+ + +++.|+..+.+ +.+++|.+.. +. ....+.. |...+.
T Consensus 349 -----------~~~lt~~~~~--v~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~ 413 (719)
T 1z68_A 349 -----------AIQITSGKWE--AINIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYY 413 (719)
T ss_dssp -----------CEECSCSSSC--EEEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBE
T ss_pred -----------eEecccCceE--EEEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceE
Confidence 2333333332 667777 5 77776665544 7888888753 42 1233432 556788
Q ss_pred EEeecCCCCeEEEe-eCC--CCEEEeccCCCCCC
Q 011160 390 CIEPHPHSTVLASS-GIE--SDIKILTPNAADRA 420 (492)
Q Consensus 390 ~~~~s~~~~~l~s~-~~d--g~i~iw~~~~~~~~ 420 (492)
.+.|+|++++++.. +.. ..+.+|++.+++..
T Consensus 414 ~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 414 TASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp EEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred EEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 99999999987743 333 46889998877643
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=1.1e-22 Score=185.18 Aligned_cols=263 Identities=10% Similarity=0.082 Sum_probs=170.6
Q ss_pred CccceEEEEEEcCCCCEEEEecC---CCeEEEEECCCCce--eeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEE
Q 011160 59 KHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRH 132 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~i 132 (492)
.+...+..++|+|+|+ |++++. ++.|++|++.++.. +..+ ..+...+..++|+| ++++|++++ .++.|.+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~sp--dg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDE--ARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEET--TTTEEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECC--CCCEEEEEeCCCCEEEE
Confidence 3456677899999999 555443 68999999977663 2222 34677889999999 999888877 6799999
Q ss_pred EecccCCe-eeeEEeec---------CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC-CCCccceeecCCCCCCCcce
Q 011160 133 AQILERGG-VETKLLGK---------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYM 201 (492)
Q Consensus 133 w~~~~~~~-~~~~~~~~---------~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 201 (492)
|++..... .....+.. +...+.+++|+|++. ++++...++.|.+|++. +++..........
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~------- 184 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTME------- 184 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECC-------
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-------
Confidence 99964322 22111211 123488999999996 77777788999999998 4443222111000
Q ss_pred eecceEEEEEcCCCCceEEEecCCCeEEEEeccc--ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee
Q 011160 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (492)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (492)
....+..++|+|++..++++...++.|.+|++.. ++......+. .... .......+..++|+|+|++|+++
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~------~~~~-~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK------TIPA-DYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE------SSCT-TCCSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee------ecCC-CCCCCCcceeEEECCCCCEEEEE
Confidence 1124678999998433555567889999999874 3211000000 0000 00112458899999999987544
Q ss_pred c--CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcE
Q 011160 280 N--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (492)
Q Consensus 280 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~ 357 (492)
. ++.|.+|++..... ...+..+..+... +..++| +|+|++
T Consensus 258 ~~~~~~v~v~~~~~~g~-----------------------------------~~~~~~~~~~~~~--~~~~~~-spdg~~ 299 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGH-----------------------------------LTLIQQISTEGDF--PRDFDL-DPTEAF 299 (347)
T ss_dssp EETTTEEEEEEECGGGC-----------------------------------EEEEEEEECSSSC--CCEEEE-CTTSSE
T ss_pred eCCCCEEEEEEECCCCc-----------------------------------EEEeEEEecCCCC--cCeEEE-CCCCCE
Confidence 3 56899999863100 1223334433332 678898 999998
Q ss_pred EEEeecc-CeEEEE--ecCCCeee
Q 011160 358 VVSGSDC-GRIFIW--KKKGGELI 378 (492)
Q Consensus 358 l~sg~~d-g~i~iw--d~~~~~~~ 378 (492)
|++++.+ +.|.+| |..+|++.
T Consensus 300 l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 300 VVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEcCCCcEEEEEEeCCCCeEE
Confidence 8887754 899999 55667655
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=4.9e-23 Score=188.13 Aligned_cols=270 Identities=8% Similarity=-0.011 Sum_probs=192.8
Q ss_pred CCCCCCCceEeeccC-------cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEE
Q 011160 4 ASNNNNNKRARTSVD-------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL 76 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~-------dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 76 (492)
+.++|+++++++++. ++.|.+||..+++.. ..+.. ...+..++|+|+|+++
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---------------------~~~~~-~~~~~~~~~s~dg~~l 103 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---------------------QAIHN-DLKPFGATINNTTQTL 103 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---------------------EEEEE-SSCCCSEEEETTTTEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---------------------EEEec-CCCcceEEECCCCCEE
Confidence 457789888777663 678999999988766 22322 2346789999999855
Q ss_pred -EEecCCCeEEEEECCCCceeeeeccCcCc--------ceEEEEecCCCCCceEEeec--CCCcEEEEecccCCeeeeEE
Q 011160 77 -ISGSDDRRVILWDWKTERVKLSFHSGHND--------NVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKL 145 (492)
Q Consensus 77 -~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~ 145 (492)
++...++.|.+||..+++.+..+..++.. .+.+++|+| +++++++++ .++.|.+||+.+++....
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~-- 179 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTA-- 179 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEE--
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEE--
Confidence 55566799999999999887776332221 278899999 998877765 478899999988766554
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC
Q 011160 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 146 ~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
+..+...+.+++|+|++. .+++++.++.|.+||+.+++....+..... + +...+..++|+|++..++++...+
T Consensus 180 ~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~--~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNKILSRKKLLDD----G--KEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp ECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTEEEEEEECCCS----S--SCCCEEEEEEETTTTEEEEEESSS
T ss_pred ecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCeEEEEEEcCCC----C--CCcccceEEECCCCCEEEEEeCCC
Confidence 444555688999999994 678888899999999999987766654211 0 223577899999854445555566
Q ss_pred CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCC
Q 011160 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPV 303 (492)
Q Consensus 226 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~ 303 (492)
+.|.+||+.+++....... + ....++|+|++++++++. ++.|.+||..++
T Consensus 253 ~~v~~~d~~~~~~~~~~~~--------------~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----------- 304 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAA--------------P---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY----------- 304 (353)
T ss_dssp SEEEEEETTTCCEEEEEEC--------------S---SCCCEEEETTTTEEEEEETTTTEEEEEETTTT-----------
T ss_pred CEEEEEECCCCcEEEEEEc--------------C---CCceEEECCCCCEEEEEECCCCeEEEEECCCC-----------
Confidence 9999999988764432211 1 124689999998655544 568999998763
Q ss_pred CccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC
Q 011160 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg 365 (492)
.....+.... .+.+++| +|+|++|+++..++
T Consensus 305 ---------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 305 ---------------------------KVVKTFDTPT---HPNSLAL-SADGKTLYVSVKQK 335 (353)
T ss_dssp ---------------------------EEEEEEECCS---EEEEEEE-CTTSCEEEEEEECC
T ss_pred ---------------------------eEEEEEecCC---CCCeEEE-cCCCCEEEEEEccc
Confidence 2333343332 2688898 99999887766554
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=9.3e-23 Score=185.96 Aligned_cols=297 Identities=13% Similarity=0.098 Sum_probs=189.2
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeeeeE
Q 011160 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETK 144 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~ 144 (492)
.+++++++.++++++.++.|++||+.+++.+..+..+....+..++|+| ++++++ ++..++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4567888999999999999999999999887776323323578999999 988654 5567899999999887665442
Q ss_pred EeecC----CCceEEEEEcCCCCcEEEEEcCC------------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 145 LLGKH----QGRAHKLAIEPGSPHVFYTCGED------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 145 ~~~~~----~~~v~~i~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
..... ...+..++|+|++. .+++++.+ +.|.+||+.+++....+.... ....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~ 152 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--------MPRQVYL 152 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--------CCSSCCC
T ss_pred EcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--------CCCcccc
Confidence 22211 23378899999995 66776654 899999998865443222111 2225788
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccc-------cC--CCCcCCCcccceEEEEEcCCCCeeEee
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY-------FC--PPNLIGDEQVGITGLAFSDQSELLVSY 279 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (492)
++|+|+ ++ +++++. .|++||+.+++.......+..... .. ..............+++++++......
T Consensus 153 ~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 153 MRAADD-GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EEECTT-SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred eeECCC-Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 999998 55 444443 499999988765443222110000 00 000000001134456777655322111
Q ss_pred cCC--cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC-CCc
Q 011160 280 NDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCE 356 (492)
Q Consensus 280 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~g~ 356 (492)
..+ .+..++..++. .....+..+.. .+.++++ +| +|+
T Consensus 229 ~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~--~~~~~~~-sp~dg~ 268 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGK-------------------------------------THTQEFADLTE--LYFTGLR-SPKDPN 268 (349)
T ss_dssp CEEEEEEEEEETTTCC-------------------------------------EEEEEEEECSS--CEEEEEE-CSSCTT
T ss_pred cccceeEEEEeccCCc-------------------------------------EEecccccCCC--cceeeEe-cCCCCC
Confidence 111 12223433321 00011111112 2678888 99 999
Q ss_pred EEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 357 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++||+.+++..
T Consensus 269 ~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 269 QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 99988 889999999999988887643 45789999999999888888999999999887543
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.91 E-value=8.7e-23 Score=189.04 Aligned_cols=290 Identities=12% Similarity=0.100 Sum_probs=193.7
Q ss_pred EeecCccceEEE-----EEEcCCCCEEEEecC-CC--eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC
Q 011160 55 AKLDKHRGCVNT-----VSFNTDGDILISGSD-DR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 55 ~~~~~h~~~v~~-----~~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++..... .++...+..++|+| +++.|+.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~sp--dg~~l~~~~~ 100 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSP--DDDALFYVKD 100 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECT--TSSEEEEEET
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcC--CCCEEEEEeC
Confidence 556667766666 899999999998887 66 4888899888765444 56666666788999 9999999999
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEE--EEcCCCCcEEEE----------------------EcCCCcEEEEeCCC
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKL--AIEPGSPHVFYT----------------------CGEDGLVQHFDLRT 182 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~~l~~----------------------~~~dg~i~iwd~~~ 182 (492)
++.|++||+.+++.... ...+...+... .++|++. +++. ...+..|.+||+.+
T Consensus 101 ~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVV--YQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp TTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred CCeEEEEECCCCcceee--eechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 99999999998776544 34444444333 3488884 5543 22446799999999
Q ss_pred CCccceeecCCCCCCCcceeecceEEEEEcC-CCCceEEEecCC------CeEEEEecccccccCCCCCCCCccccCCCC
Q 011160 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (492)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (492)
++...... +...+..++|+| + +..|+....+ ..|.++|+...+.. .
T Consensus 178 g~~~~l~~-----------~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~---------------~ 230 (388)
T 3pe7_A 178 GESTVILQ-----------ENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDARMWLINEDGTNMR---------------K 230 (388)
T ss_dssp CCEEEEEE-----------ESSCEEEEEEETTE-EEEEEEEECSCTTTSSCSEEEEETTSCCCE---------------E
T ss_pred CceEEeec-----------CCccccccEECCCC-CCEEEEEEecCCCCCcceEEEEeCCCCceE---------------E
Confidence 87654443 334578899999 8 5666655543 36788887654311 1
Q ss_pred cCCCcc-cceEEEEEcCCCCeeEeec--CC----cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCc
Q 011160 256 LIGDEQ-VGITGLAFSDQSELLVSYN--DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (492)
Q Consensus 256 ~~~~~~-~~i~~~~~s~~~~~l~~~~--~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (492)
+..... ..+..++|+|+|+.|+..+ .+ .|++||+.++..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---------------------------------- 276 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN---------------------------------- 276 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE----------------------------------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce----------------------------------
Confidence 111111 3577889999999776544 22 299999987521
Q ss_pred cccCCceeeccccce-eeeeEEeecCCCcEEEEe---------eccCeEEEEecCCCeeeEEEecCCc-----------e
Q 011160 329 VRIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSG---------SDCGRIFIWKKKGGELIRVIEADRH-----------V 387 (492)
Q Consensus 329 ~~~~~~~~~~~~~~~-~v~~~~~~s~~g~~l~sg---------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~ 387 (492)
..+..+.++.... ....+.| +|||++|+.. ..+..|++||+.+++. ..+..|.. .
T Consensus 277 --~~l~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~ 352 (388)
T 3pe7_A 277 --RQLTSMPACSHLMSNYDGSLM-VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVT 352 (388)
T ss_dssp --EEEEEECCEEEEEECTTSSEE-EEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTT
T ss_pred --EEEEcCCCceeeeecCCCCeE-ccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccC
Confidence 1111222211000 0122356 9999988854 4567899999988775 44555555 5
Q ss_pred eEEEeecCCCCeEEEee-CCCCEEEeccC
Q 011160 388 VNCIEPHPHSTVLASSG-IESDIKILTPN 415 (492)
Q Consensus 388 v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 415 (492)
+..++|+|||+.|+.++ .+|...||.+.
T Consensus 353 ~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 353 HPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 78899999999877665 46777777654
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=2.4e-21 Score=177.32 Aligned_cols=301 Identities=11% Similarity=0.066 Sum_probs=185.5
Q ss_pred CEEEEe----cCCCeEEEEEC--CCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC----CcEEEEecccC--Cee
Q 011160 74 DILISG----SDDRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILER--GGV 141 (492)
Q Consensus 74 ~~l~s~----~~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~--~~~ 141 (492)
.+++.| +.++.|.+|.+ .+++....... +...+..++|+| ++++|++++.+ +.|.+|++... ...
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 344555 34578999876 45554333322 667788899999 99999988875 79999998764 222
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeec----CCCCCCCcceeecceEEEEEcCCCCc
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC----RPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
.......+...+..+++ ++..++++...++.|.+|++.....+..+.. ..............+.+++|+|++..
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 22223345566777888 6644555555789999999976543322210 00000000002234678999998433
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCcccc-CCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCC
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF-CPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLG 294 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~ 294 (492)
++++...++.|++|++.......... ..... ............+..++|+|+|++|++++ ++.|.+|++.++..
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKE---KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCC---CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCccccc---ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 55556668999999987543100000 00000 00001111234578899999999877665 56899999875311
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCcee---eccccceeeeeEEeecCCCcEEEEeec--cCeEEE
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY---KGHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIFI 369 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~s~~g~~l~sg~~--dg~i~i 369 (492)
.....+ ..+... ...++| +|+|++|+++.. ++.|.+
T Consensus 246 ------------------------------------~~~~~~~~~~~~~~~--~~~i~~-spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 246 ------------------------------------DEIQTVAADTVNAQG--SGDIHL-SPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp ------------------------------------EEEEEEESCSSCCCC--EEEEEE-CTTSSEEEEEECSSSCEEEE
T ss_pred ------------------------------------EEeEEEecCCCCCCC--cccEEE-CCCCCEEEEECCCCCCEEEE
Confidence 111111 111111 468888 999999876655 489999
Q ss_pred EecC--CCe--eeEEEecCCceeEEEeecCCCCeEEEee-CCCCEEEecc--CCCCCCcc
Q 011160 370 WKKK--GGE--LIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTP--NAADRATL 422 (492)
Q Consensus 370 wd~~--~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~--~~~~~~~~ 422 (492)
|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+|++ +++++..+
T Consensus 287 ~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 9985 454 4455554 45688999999999888887 5789999654 56655443
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=4.9e-22 Score=185.15 Aligned_cols=217 Identities=12% Similarity=0.073 Sum_probs=151.0
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEE----Ee
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI----SG 79 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~----s~ 79 (492)
+..++++.++++++.+| |+||+...-... ..................+ .|.+.|++++|+|++++|+ +|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQ-----NKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCC-----CCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEET
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhh-----cccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEecc
Confidence 34567888899988887 899886521110 0000000011111111222 3677899999999999999 89
Q ss_pred cCCCeEEEEECCCC--------cee--eeeccCcCcceEEEEecCCCC-CceEEeecCCCcEEEEecccCCeeeeEEeec
Q 011160 80 SDDRRVILWDWKTE--------RVK--LSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (492)
Q Consensus 80 ~~d~~i~iwd~~~~--------~~~--~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 148 (492)
+.|+.|+|||+.++ +.+ .....+|...|.+++|+| + +.+|++++.||+|++||++++.... ...+
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~las~s~Dg~v~iwD~~~~~~~~--~~~~ 190 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP--TVPSMVAVCLADGSIAVLQVTETVKVC--ATLP 190 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS--SCTTEEEEEETTSCEEEEEESSSEEEE--EEEC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC--CCCCEEEEEECCCeEEEEEcCCCccee--eccC
Confidence 99999999998654 111 233467999999999999 7 7899999999999999998874433 2556
Q ss_pred CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE-ecCCC-
Q 011160 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDE- 226 (492)
Q Consensus 149 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg- 226 (492)
|...|++++|+|++ .+|++|+.||.|++||++ ++....+..+.... ..+...+.+++|+++ ..++++ ...+|
T Consensus 191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~---~~~~~~v~~v~w~~~-~~~l~~~~~~dg~ 264 (434)
T 2oit_A 191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE---SDHPVRVLDVLWIGT-YVFAIVYAAADGT 264 (434)
T ss_dssp GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCC---TTSCEEEEEEEEEET-TEEEEEEEETTCC
T ss_pred CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccC---CCCceeEEEEEEecC-ceEEEEEccCCCc
Confidence 88999999999998 578999999999999998 54444443322110 013347899999997 445533 33443
Q ss_pred -----eEEEEeccccc
Q 011160 227 -----YTRLYDIRKYK 237 (492)
Q Consensus 227 -----~v~i~d~~~~~ 237 (492)
.+++|++++.+
T Consensus 265 ~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 265 LETSPDVVMALLPKKE 280 (434)
T ss_dssp SSSCCEEEEEECCCTT
T ss_pred cCCCCceEEEEeccCC
Confidence 38999998653
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.9e-21 Score=178.00 Aligned_cols=301 Identities=11% Similarity=0.078 Sum_probs=188.9
Q ss_pred CceEeec----cCcceEEEEeec--cCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC-
Q 011160 10 NKRARTS----VDKALVDVWLRE--LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD- 82 (492)
Q Consensus 10 ~~~l~t~----~~dg~v~~w~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d- 82 (492)
..++++| +.++.|.+|.++ +|++. ....+ |......++|+|+|++|++++.+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~-------------------~~~~~--~~~~p~~l~~spdg~~l~~~~~~~ 71 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESL-------------------PLSDA--EVANPSYLIPSADGKFVYSVNEFS 71 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEE-------------------EEEEE--ECSCCCSEEECTTSSEEEEEECCS
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEE-------------------Eeecc--cCCCCceEEECCCCCEEEEEEccC
Confidence 3445555 456789999875 44433 11223 66777889999999999998875
Q ss_pred ---CeEEEEECCC--Cce--eeeeccCcCcceEEEEecCCCCCceEEeec-CCCcEEEEecccCCeeeeE----Eeec--
Q 011160 83 ---RRVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETK----LLGK-- 148 (492)
Q Consensus 83 ---~~i~iwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~----~~~~-- 148 (492)
+.|.+|++.. +.. +... ..+......+++ ++++|++++ .++.|.+|++.....+... ...+
T Consensus 72 ~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 72 KDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp STTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred CCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 7999998865 433 2222 234456667777 456565554 6889999999754432210 0111
Q ss_pred ------CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc------cc------eeecCCCCCCCcceeecceEEEE
Q 011160 149 ------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA------TE------LFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 149 ------~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~------~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
+...+.+++|+|++..++++...++.|.+|++..... +. ..... ....+..++
T Consensus 147 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 217 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA---------PGSGPRHLI 217 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC---------TTCCEEEEE
T ss_pred CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC---------CCCCCeEEE
Confidence 1234588999999965556666689999999876542 11 11111 223467899
Q ss_pred EcCCCCceEEEec-CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C--CcEEE
Q 011160 211 IDPRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D--EFIYL 286 (492)
Q Consensus 211 ~~p~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~--~~i~~ 286 (492)
|+|+ ++++++++ .++.|.+|++.+++...... ......+......++|+|+|++|+++. . +.|.+
T Consensus 218 ~spd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~----------~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 218 FNSD-GKFAYLINEIGGTVIAFRYADGMLDEIQT----------VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp ECTT-SSEEEEEETTTCEEEEEEEETTEEEEEEE----------EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred EcCC-CCEEEEEcCCCCeEEEEEecCCceEEeEE----------EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 9998 56555554 78999999998654311100 001112234568999999999886655 4 47999
Q ss_pred EecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee-ccC
Q 011160 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCG 365 (492)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~-~dg 365 (492)
|++...... ...+..+.. .. .+..++| +|+|++|++++ .++
T Consensus 287 ~~~~~~~g~----------------------------------~~~~~~~~~-g~--~~~~~~~-spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 287 FKVDETNGT----------------------------------LTKVGYQLT-GI--HPRNFII-TPNGKYLLVACRDTN 328 (361)
T ss_dssp EEECTTTCC----------------------------------EEEEEEEEC-SS--CCCEEEE-CTTSCEEEEEETTTT
T ss_pred EEEcCCCCc----------------------------------EEEeeEecC-CC--CCceEEE-CCCCCEEEEEECCCC
Confidence 998631000 112222222 11 2678888 99999888877 678
Q ss_pred eEEEE--ecCCCeeeEEE-ecCCceeEEEeec
Q 011160 366 RIFIW--KKKGGELIRVI-EADRHVVNCIEPH 394 (492)
Q Consensus 366 ~i~iw--d~~~~~~~~~~-~~h~~~v~~~~~s 394 (492)
.|.+| |..++++.... ..+...+.++.|.
T Consensus 329 ~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 329 VIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99996 45567665433 1233468888885
No 157
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=7.3e-22 Score=178.60 Aligned_cols=246 Identities=9% Similarity=0.055 Sum_probs=170.7
Q ss_pred CCCCCCCceEeec-cCcceEEEEeeccCcc-hhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 4 ASNNNNNKRARTS-VDKALVDVWLRELGQL-STRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 4 ~~~~~~~~~l~t~-~~dg~v~~w~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
+.++|++++++++ ..++.|.+||..++++ . ..+..+..+..+++|+|+|++|+++..
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~ 103 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKV---------------------VAIQEGQSSMADVDITPDDQFAVTVTG 103 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSSSCEE---------------------EEEEECSSCCCCEEECTTSSEEEECCC
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCCceeE---------------------EecccCCCCccceEECCCCCEEEEecC
Confidence 4578999865554 4589999999998876 3 445556666666999999999996655
Q ss_pred CC---eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEee-cCCCc-EEEEecccCCeeeeE--EeecCCCceE
Q 011160 82 DR---RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQ-VRHAQILERGGVETK--LLGKHQGRAH 154 (492)
Q Consensus 82 d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~-v~iw~~~~~~~~~~~--~~~~~~~~v~ 154 (492)
++ .|.+||+.+++.+..+ . +.....+++|+| ++++|+++ ..++. |.+|++.....+... ........+.
T Consensus 104 ~~~~~~i~v~d~~~~~~~~~~-~-~~~~~~~~~~sp--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 179 (331)
T 3u4y_A 104 LNHPFNMQSYSFLKNKFISTI-P-IPYDAVGIAISP--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF 179 (331)
T ss_dssp SSSSCEEEEEETTTTEEEEEE-E-CCTTEEEEEECT--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred CCCcccEEEEECCCCCeEEEE-E-CCCCccceEECC--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence 53 8999999999887766 2 334578999999 99866655 45578 999998764433211 1223445689
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc---cceeecCCCCCCCcceeecceEEEEEcCCCCceE-EEecCCCeEEE
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYTRL 230 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~v~i 230 (492)
.++|+|++..+++++..++.|.+||+.+++. +..+. ....+..++|+|+ ++++ ++...++.|.+
T Consensus 180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-----------~~~~~~~~~~spd-g~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 180 NITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-----------TNNLPGTIVVSRD-GSTVYVLTESTVDVFN 247 (331)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----------CSSCCCCEEECTT-SSEEEEECSSEEEEEE
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----------CCCCCceEEECCC-CCEEEEEEcCCCEEEE
Confidence 9999999965666777789999999998887 54443 2235678999998 5544 45556888999
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCC
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMG 292 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~ 292 (492)
||+.+++......+.. ..............++|+|++++|++++ ++.|.+|++...
T Consensus 248 ~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 248 FNQLSGTLSFVKSFGH------GLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEEEEEC------CCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EECCCCceeeeccccc------ccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9998876511100000 0000011112236689999999876555 347999999763
No 158
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.90 E-value=1.3e-21 Score=178.06 Aligned_cols=310 Identities=13% Similarity=0.095 Sum_probs=204.2
Q ss_pred CCCceEeec------cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec-
Q 011160 8 NNNKRARTS------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS- 80 (492)
Q Consensus 8 ~~~~~l~t~------~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~- 80 (492)
++++++.+. ..|+.|.+||..+++++ .++..+..+ .++|+|||++|+++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~---------------------~~i~~g~~p--~i~~spdg~~lyv~~~ 69 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFL---------------------GMVPTAFNG--HVQVSNDGKKIYTMTT 69 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEE---------------------EEEECCEEE--EEEECTTSSEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEE---------------------EEecCCCCC--ceEECCCCCEEEEEEe
Confidence 466665553 34789999999988766 455556666 899999999999875
Q ss_pred ---------CCCeEEEEECCCCceeeeeccC-----cCcceEEEEecCCCCCceEEeecC--CCcEEEEecccCCeeeeE
Q 011160 81 ---------DDRRVILWDWKTERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETK 144 (492)
Q Consensus 81 ---------~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~ 144 (492)
.++.|.+||..+++.+..+... +......++++| ++++|+++.. ++.|.+||+.+++.+..
T Consensus 70 ~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~- 146 (361)
T 2oiz_A 70 YHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVED- 146 (361)
T ss_dssp EETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEE-
T ss_pred cccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEE-
Confidence 3678999999988887776322 234567899999 9999998864 58999999988754432
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
.+. .. ....+.+.|+++..+++.+.||.+.+|++.. ++............. .. ....+.++|+ +..++..+
T Consensus 147 ~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~----~~-~~~~~~~~~~-g~~~~~~~ 218 (361)
T 2oiz_A 147 VTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV----KD-DPIFIAPALD-KDKAHFVS 218 (361)
T ss_dssp EGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT----TT-SCBCSCCEEC-SSEEEEEB
T ss_pred Eec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC----CC-CceEEEeccc-CCEEEEEe
Confidence 022 21 2233667888766788899999999999865 443311110000000 00 0112233455 34556666
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec------------CCcEEEEecCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN------------DEFIYLFTQDM 291 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------------~~~i~~~d~~~ 291 (492)
.++.|.++|+..........+...... .............++|+|+++.++++. .+.|.+||+.+
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLNDE---DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCHH---HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred CCCeEEEEEecCCCceecccccccCcc---ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 789999999865431100000000000 000000011122368999987766543 23699999887
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
.+.+..+..+. ..+++| +|+|++|++++. +.|.+||
T Consensus 296 --------------------------------------~~~v~~i~~~~----p~~ia~-spdg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 296 --------------------------------------KQRVARIPGRD----ALSMTI-DQQRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp --------------------------------------TEEEEEEECTT----CCEEEE-ETTTTEEEEECS-SCEEEEE
T ss_pred --------------------------------------CcEEEEEecCC----eeEEEE-CCCCCEEEEeCC-CeEEEEE
Confidence 34556666555 578888 999999998887 9999999
Q ss_pred cCCC--eeeEEEecCCceeEEEeecCCCC
Q 011160 372 KKGG--ELIRVIEADRHVVNCIEPHPHST 398 (492)
Q Consensus 372 ~~~~--~~~~~~~~h~~~v~~~~~s~~~~ 398 (492)
..++ +.+..+..+......++++|+|+
T Consensus 332 ~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 332 ISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999 99999877777789999999986
No 159
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=6.7e-22 Score=175.73 Aligned_cols=248 Identities=13% Similarity=0.131 Sum_probs=171.5
Q ss_pred eecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcce
Q 011160 123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYM 201 (492)
Q Consensus 123 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 201 (492)
.++.++.|++||+.+++... +..|...|.+++|+|++. +|++++ ++.|++||+.+ ++........
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~---~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~--------- 82 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV---VWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGF--------- 82 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE---EEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTT---------
T ss_pred CCCcceeEEEEeCCCCceee---eccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEecccc---------
Confidence 34678999999998766443 556888999999999994 667665 78999999998 7655443221
Q ss_pred eecceEEEEEcCCCCceEEEec--CCCeEEEEec--ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeE
Q 011160 202 TVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDI--RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (492)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~--~dg~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 277 (492)
....+.+++|+|+ +++|++++ .++...+|.+ ..++. .... ....+..++|+|++++|+
T Consensus 83 ~~~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~~----------------~~~~-~~~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 83 ATICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGTP----------------RLMT-KNLPSYWHGWSPDGKSFT 144 (297)
T ss_dssp CCCBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCCC----------------EECC-SSSSEEEEEECTTSSEEE
T ss_pred ccccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCce----------------EEee-cCCCccceEECCCCCEEE
Confidence 2245788999998 67888877 3345555554 43321 0111 122488899999999877
Q ss_pred -eec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCC
Q 011160 278 -SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (492)
Q Consensus 278 -~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g 355 (492)
++. ++.+.+|+++.. ......+..+... +.++.| +|+|
T Consensus 145 ~~~~~~~~~~l~~~~~~-------------------------------------~~~~~~~~~~~~~--~~~~~~-s~dg 184 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDID-------------------------------------SGVETRLTHGEGR--NDGPDY-SPDG 184 (297)
T ss_dssp EEEEETTEEEEEEEETT-------------------------------------TCCEEECCCSSSC--EEEEEE-CTTS
T ss_pred EEECCCCceEEEEEECC-------------------------------------CCcceEcccCCCc--cccceE-CCCC
Confidence 444 677888886532 1112333344443 788898 9999
Q ss_pred cEEEEee-ccCeEEEEecC-CCeeeEEEecCCceeEEEeecCCCCeEEEeeCC-----------CCEEEeccCCCCCCcc
Q 011160 356 EYVVSGS-DCGRIFIWKKK-GGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-----------SDIKILTPNAADRATL 422 (492)
Q Consensus 356 ~~l~sg~-~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i~iw~~~~~~~~~~ 422 (492)
++|++++ .++.++||++. .+..+..+..|...+..++|+|++++|++++.+ +.|++|++.+++...+
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 9888766 58999999986 566777888888889999999999999888776 5699999988765443
Q ss_pred cCcccccccccccccccccCchhhH
Q 011160 423 PTNIEQFKPKATRWMHHVLSPEDLM 447 (492)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (492)
.... .+...+..++++++..
T Consensus 265 ~~~~-----~~~~~~~~~~~spdg~ 284 (297)
T 2ojh_A 265 FDLF-----GGQGTMNSPNWSPDGD 284 (297)
T ss_dssp EEEE-----ESTTTSCSCCBCTTSS
T ss_pred eccC-----CCCcccccceECCCCC
Confidence 2110 1234455566555443
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=1.2e-22 Score=198.16 Aligned_cols=263 Identities=12% Similarity=0.076 Sum_probs=179.0
Q ss_pred CCCCCCCCceEeeccC-cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCcc-ceEEEEEEcCCCCEEEEec
Q 011160 3 DASNNNNNKRARTSVD-KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~-dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~ 80 (492)
.+.++|||++||+++. ||+++||++.+|+.. .+..|. ..+..++|+|| +++++++
T Consensus 26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----------------------~lt~~~~~~~~~~~~spd-~~l~~~~ 82 (582)
T 3o4h_A 26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----------------------KLNREPINSVLDPHYGVG-RVILVRD 82 (582)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTEEE----------------------ECCSSCCSEECEECTTCS-EEEEEEE
T ss_pred eeecCCCCCeEEEEEccCCceeEEEEcCCCcE----------------------eeecccccccccccCCCC-eEEEEec
Confidence 4568899999999887 999999999765543 344455 68999999999 7777766
Q ss_pred C---CCeEEEEECCC---CceeeeeccCcCcceEEEEecCCCCCce-EEeecCCCcEEEEecccCCeeeeEEeecCCCce
Q 011160 81 D---DRRVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (492)
Q Consensus 81 ~---d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v 153 (492)
. +...+||.+.. +.. ..+...+ .+...+|+| +++. +++.+.++.+.+||+.+++.... ..+..
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~~-~~l~~~~--~~~~~~~s~--dg~~~~~~s~~~~~~~l~d~~~g~~~~l---~~~~~-- 152 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGEE-QRLEAVK--PMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLREL---ARLPG-- 152 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTCC-EECTTSC--SBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEE---EEESS--
T ss_pred cCCCCcceEEEEEeccCCCcc-ccccCCC--CceeeeeCC--CCCeEEEEecCCCCceEEEccCCcEEEe---ecCCC--
Confidence 4 45556655432 222 2332222 344668888 7653 33333445556999988754432 22333
Q ss_pred EEEEEcCCCCcEEEEEcCC----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC--e
Q 011160 154 HKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--Y 227 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~ 227 (492)
.+++|+||| +.|++++.+ +.|++||+.+++.... .. +...+..++|+|+ ++.|+++..++ .
T Consensus 153 ~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~~l-~~----------~~~~~~~~~~SpD-G~~l~~~~~~~~~~ 219 (582)
T 3o4h_A 153 FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLRVF-DS----------GEGSFSSASISPG-MKVTAGLETAREAR 219 (582)
T ss_dssp CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCEEE-CC----------SSCEEEEEEECTT-SCEEEEEECSSCEE
T ss_pred ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCceEe-ec----------CCCccccceECCC-CCEEEEccCCCeeE
Confidence 789999999 577777666 7799999998876532 21 3446799999998 67888888888 8
Q ss_pred EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEE--------EcCCCCeeEeec-CCcEEEEecCCCCCCCCC
Q 011160 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA--------FSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (492)
Q Consensus 228 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~ 298 (492)
|++||+.+++.. ....+...+..++ |+|+|.++++++ ++.+++|++ ++.
T Consensus 220 i~~~d~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~---- 277 (582)
T 3o4h_A 220 LVTVDPRDGSVE----------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER---- 277 (582)
T ss_dssp EEEECTTTCCEE----------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE----
T ss_pred EEEEcCCCCcEE----------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe----
Confidence 999999876532 1222333344444 999998777777 678999998 311
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC---eEEEEecCC
Q 011160 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKG 374 (492)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg---~i~iwd~~~ 374 (492)
.. .... .+.+++| + +++++++++.+. .|++|+..+
T Consensus 278 ----------------------------------~~---~~~~--~v~~~~~-s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 278 ----------------------------------VE---APQG--NHGRVVL-W-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ----------------------------------EC---CCSS--EEEEEEE-E-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ----------------------------------ec---cCCC--ceEEEEe-c-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 00 1112 2778888 8 999999888774 477777654
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=4.2e-22 Score=199.63 Aligned_cols=291 Identities=11% Similarity=0.043 Sum_probs=191.3
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCc---ceEEEEecCCCCCceEEeecC---------CCcEEEE
Q 011160 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAA---------DGQVRHA 133 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~~~~~---------dg~v~iw 133 (492)
+++|+|+|++++++ .|+.|++||+.+++....+ .+|.. .+.+++|+| ||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence 77999999766655 5899999999998875544 44433 389999999 9999998876 6899999
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCC-CCCccee-------ecc
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMT-------VVN 205 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~-------~~~ 205 (492)
|+.+++......+ ...+..++|+|||. .|+.+. ++.|++|++.+++........... ...++.. ...
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred ECCCCccccceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 9988765211112 25688999999995 556664 789999999988764332111000 0000000 011
Q ss_pred eEEEEEcCCCCceEEEecCCC----------------------------------eEEEEecccccccCCCCCCCCcccc
Q 011160 206 LNAIAIDPRNANLFAVAGSDE----------------------------------YTRLYDIRKYKWDGSTDFGQPADYF 251 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg----------------------------------~v~i~d~~~~~~~~~~~~~~~~~~~ 251 (492)
..+++|+|+ ++.|++++.|. .|++||+.+++......+.
T Consensus 171 ~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~------ 243 (719)
T 1z68_A 171 KYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP------ 243 (719)
T ss_dssp SCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC------
T ss_pred cccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc------
Confidence 258999998 67888776542 7889999876532100000
Q ss_pred CCCCcCCCcccceEEEEEcCCCCeeEeecC-C----cEEEEe----cCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 011160 252 CPPNLIGDEQVGITGLAFSDQSELLVSYND-E----FIYLFT----QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (492)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~----~i~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (492)
.......+...+..++|+||++++++..+ + .|.+|| ..++
T Consensus 244 -~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g------------------------------ 292 (719)
T 1z68_A 244 -VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW------------------------------ 292 (719)
T ss_dssp -CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE------------------------------
T ss_pred -CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC------------------------------
Confidence 00112245678999999999887776432 1 388888 5553
Q ss_pred CCCCCccccCCcee----eccccceeee-----eEEeecCCCcEEEE--eeccC--eEEEEecCCCeeeEEEecCCceeE
Q 011160 323 STANTDVRIAPQVY----KGHRNCVTVK-----GVNFFGPKCEYVVS--GSDCG--RIFIWKKKGGELIRVIEADRHVVN 389 (492)
Q Consensus 323 ~~~~~~~~~~~~~~----~~~~~~~~v~-----~~~~~s~~g~~l~s--g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~ 389 (492)
.....+ .+|... +. .+.| +|||+.|+. ...+| .|++|++.+++ ...+..+...+.
T Consensus 293 --------~~~~~~~~~~~~~~~~--~~~~~~~~~~~-spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~ 360 (719)
T 1z68_A 293 --------DCPKTQEHIEESRTGW--AGGFFVSTPVF-SYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI 360 (719)
T ss_dssp --------ECCGGGEEEEECSSSC--SSSSSCCCCEE-CTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEE
T ss_pred --------ceEEEEecccccCCce--EccccCCccEE-CCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEE
Confidence 122222 234433 33 6777 999996554 43444 68888887766 456666666677
Q ss_pred EEeecCCCCeEEEeeCC-----CCEEEeccCC
Q 011160 390 CIEPHPHSTVLASSGIE-----SDIKILTPNA 416 (492)
Q Consensus 390 ~~~~s~~~~~l~s~~~d-----g~i~iw~~~~ 416 (492)
.+.++ +++.|+..+.+ +.+++|.+..
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 77777 78777666554 8899998764
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.89 E-value=5.4e-21 Score=191.49 Aligned_cols=330 Identities=7% Similarity=-0.016 Sum_probs=203.7
Q ss_pred CCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccc-----eEEEEEEcCCCCEEE
Q 011160 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG-----CVNTVSFNTDGDILI 77 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~ 77 (492)
++.++|++++++++ ||.|++||+.+|+.. ..+.+|.. ....++|||||++|+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~ 77 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------VFLENSTFDEFGHSINDYSISPDGQFIL 77 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------EEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------EEEechhhhhhcccccceEECCCCCEEE
Confidence 45688999988886 899999999988765 33555542 234588999999999
Q ss_pred EecCC---------CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec
Q 011160 78 SGSDD---------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (492)
Q Consensus 78 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 148 (492)
.++.+ +.+.+||+.+++.. .+ ..|...+..++||| ||+.||.+. ++.|++|++.++..... ...+
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SP--dG~~la~~~-~~~i~~~~~~~~~~~~l-t~~g 151 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSP--VGHKLAYVW-NNDIYVKIEPNLPSYRI-TWTG 151 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CSCC
T ss_pred EEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECC--CCCEEEEEE-CCeEEEEECCCCceEEE-cCCC
Confidence 98876 56679999998864 33 56778899999999 999999885 68999999987764432 1223
Q ss_pred CCCce-----------------EEEEEcCCCCcEEEEEcCC-C-----------------------------------cE
Q 011160 149 HQGRA-----------------HKLAIEPGSPHVFYTCGED-G-----------------------------------LV 175 (492)
Q Consensus 149 ~~~~v-----------------~~i~~~~~~~~~l~~~~~d-g-----------------------------------~i 175 (492)
+...+ ..+.|+|||. .|+.++.| + .|
T Consensus 152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l 230 (740)
T 4a5s_A 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF 230 (740)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEE
T ss_pred CccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEE
Confidence 32222 3589999995 56655422 1 47
Q ss_pred EEEeCCC---CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec----CCCeEEEEeccccc----ccCCCCC
Q 011160 176 QHFDLRT---GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----SDEYTRLYDIRKYK----WDGSTDF 244 (492)
Q Consensus 176 ~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~v~i~d~~~~~----~~~~~~~ 244 (492)
++||+.+ ++..............+ +...+..++|+|+ ++.++... .+..|++||+.+++ ......
T Consensus 231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~- 306 (740)
T 4a5s_A 231 FVVNTDSLSSVTNATSIQITAPASMLI--GDHYLCDVTWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ- 306 (740)
T ss_dssp EEEETTSCCSSSCCCEEEECCCHHHHT--SCEEEEEEEEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC-
T ss_pred EEEECCCCCCCCcceEEEecCCccCCC--CCeEEEEEEEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE-
Confidence 7788877 63211111110000000 3345889999998 56555442 23479999998875 110000
Q ss_pred CCCccccCCCCcCCCcccce-----EEEEEcCCCCeeE-eec--CC--cEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 245 GQPADYFCPPNLIGDEQVGI-----TGLAFSDQSELLV-SYN--DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~~~~l~-~~~--~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
.....+...+ ...+|+|||+.|+ ..+ ++ .|++|+..++.
T Consensus 307 ----------l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~--------------------- 355 (740)
T 4a5s_A 307 ----------HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD--------------------- 355 (740)
T ss_dssp ----------EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---------------------
T ss_pred ----------eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---------------------
Confidence 0001122222 3678999999776 554 33 58899987632
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE-eec----c--CeEEEEecCCCeeeEEEec----
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSD----C--GRIFIWKKKGGELIRVIEA---- 383 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s-g~~----d--g~i~iwd~~~~~~~~~~~~---- 383 (492)
...+...... +..+.. ++++.|+. ++. . ..|+..++..+.....+..
T Consensus 356 ------------------~~~lT~g~~~--v~~~~~--~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (740)
T 4a5s_A 356 ------------------CTFITKGTWE--VIGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNP 413 (740)
T ss_dssp ------------------CEESCCSSSC--EEEEEE--ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTST
T ss_pred ------------------eEecccCCEE--EEEEEE--EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCC
Confidence 1222222221 444432 34555554 433 1 3455556654443334442
Q ss_pred CCceeEEEeecCCCCeEEEeeCC---CCEEEeccCCCCC
Q 011160 384 DRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADR 419 (492)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~ 419 (492)
....+..+.|+|++++++..... ..+.+++..+++.
T Consensus 414 ~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 23568899999999977644332 3577777766543
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=7.4e-20 Score=170.47 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=125.2
Q ss_pred CCCCCCCCceEe----eccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC-CCEEE
Q 011160 3 DASNNNNNKRAR----TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILI 77 (492)
Q Consensus 3 ~~~~~~~~~~l~----t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~ 77 (492)
.+.|+|++++|+ +|+.|+.|+|||+.++... .......+.....+.+|...|++++|+|+ +.+|+
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE----------AKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCT----------TCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccccccC----------CcCCcceeeeeeccCCCCCceEEEEECCCCCCEEE
Confidence 356889999999 8999999999999865110 00000112234667889999999999998 89999
Q ss_pred EecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec-------CC
Q 011160 78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-------HQ 150 (492)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-------~~ 150 (492)
+++.||+|++||+.++...... .+|...|.+++|+| ++++|++|+.||.|++||++ +..... +.. |.
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~--~~~~~~~~~~~~ 240 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKV--IPCPPFYESDHP 240 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEE--ECCCTTCCTTSC
T ss_pred EEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-Cccccc--ccCCcccCCCCc
Confidence 9999999999999988665555 57889999999999 99999999999999999997 333322 222 23
Q ss_pred CceEEEEEcCCCCcEEEEEcCCC------cEEEEeCCCCC
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDG------LVQHFDLRTGA 184 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg------~i~iwd~~~~~ 184 (492)
..|.+++|++++..+++.+..+| .+++|++++..
T Consensus 241 ~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 241 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 48999999998732223333443 38999998753
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=9.2e-20 Score=166.78 Aligned_cols=262 Identities=9% Similarity=0.035 Sum_probs=166.6
Q ss_pred ccceEEEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeeccCcCcceEEEEecCCCCCce--EEeec-----------
Q 011160 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRS--IVTCA----------- 125 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~----------- 125 (492)
+...+..++|+|+|++|++++.+ .|.+|++. +++..........+.+.+++|+| ++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC--CCCEEEEEEecCCcceecccee
Confidence 33467789999999999998887 99999997 77654332111112356689999 9984 55553
Q ss_pred --CCCcEEEEeccc-CCeeeeEEee--cCCCceEEEEEcCCCCcEEEEEc-CCCcEEEEeCC-CCCccceeecCCCCCCC
Q 011160 126 --ADGQVRHAQILE-RGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLR-TGAATELFTCRPIDDRR 198 (492)
Q Consensus 126 --~dg~v~iw~~~~-~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~ 198 (492)
.+|.+.+|++.. ++........ .+...+.+++|+|+|. +++++. .++.|++|++. +++........ ...
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~-- 190 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVD-APD-- 190 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSS--
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCC--
Confidence 689999999974 4333221111 2456789999999995 555544 46799999998 66543211110 000
Q ss_pred cceeecceEEEEEcCCCCceEEEec-CCCeEEEEeccc--ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCe
Q 011160 199 NYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (492)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (492)
+...+..++|+|+ ++++++++ .++.|.+|++.. +++. .....+...|.+
T Consensus 191 ---~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~----------------------~~~~~~~~~~~~-- 242 (365)
T 1jof_A 191 ---PGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPV----------------------YTHHSFPLIPPG-- 242 (365)
T ss_dssp ---TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEE----------------------EEEEEEESSCTT--
T ss_pred ---CCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEE----------------------EccceEEcCCCC--
Confidence 1234778899998 55665554 467888887642 1100 000000000000
Q ss_pred eEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccc----ceeeeeEE-e
Q 011160 276 LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN----CVTVKGVN-F 350 (492)
Q Consensus 276 l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~-~ 350 (492)
+.+|.. ...+..++ |
T Consensus 243 ------------------------------------------------------------~~g~~~~~~~~~~~~~i~~~ 262 (365)
T 1jof_A 243 ------------------------------------------------------------IPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp ------------------------------------------------------------CCCBCTTTSSBSEEEEEEEE
T ss_pred ------------------------------------------------------------cCCcccccccccccccEEEE
Confidence 011110 01267888 7
Q ss_pred ecCCCcEEEEeeccC------eEEEEecC-CCeeeE---EEecCCceeEEEeecC---CCCeEEEeeCC-CCEEEeccCC
Q 011160 351 FGPKCEYVVSGSDCG------RIFIWKKK-GGELIR---VIEADRHVVNCIEPHP---HSTVLASSGIE-SDIKILTPNA 416 (492)
Q Consensus 351 ~s~~g~~l~sg~~dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~~~~s~---~~~~l~s~~~d-g~i~iw~~~~ 416 (492)
+|||++|++++.+. .|.+|++. ++++.. .+..+...+..++|+| +|++|++++.+ +.|.+|+++.
T Consensus 263 -spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 263 -TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp -CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred -CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 99999988766433 89999996 676543 2344555678899999 89999988764 8999999977
Q ss_pred C
Q 011160 417 A 417 (492)
Q Consensus 417 ~ 417 (492)
.
T Consensus 342 ~ 342 (365)
T 1jof_A 342 E 342 (365)
T ss_dssp T
T ss_pred h
Confidence 5
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=5.4e-20 Score=170.23 Aligned_cols=238 Identities=10% Similarity=0.007 Sum_probs=155.3
Q ss_pred CCCCCCCceEeeccC-cce--EEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 4 ASNNNNNKRARTSVD-KAL--VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~-dg~--v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
..++|+|++|+.++. +|. |.+||+.+++.. +...+|...+..++|+|||+.|+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---------------------~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---------------------QLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---------------------ECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---------------------EeeeCCCCCccceEEcCCCCEEEEEe
Confidence 678999999888876 664 777888877655 34455655555778999999999999
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEE--ecCCCCCceEEe----------------------ecCCCcEEEEecc
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAK--IMPFTDDRSIVT----------------------CAADGQVRHAQIL 136 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~~----------------------~~~dg~v~iw~~~ 136 (492)
.++.|++||+.+++....+ ..+...+.... ++| ++.+++. ...+..|.+||+.
T Consensus 100 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANS--DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp TTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECT--TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred CCCeEEEEECCCCcceeee-echhhcccccceeECC--CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 9999999999998875544 44555454444 477 8888773 2245789999998
Q ss_pred cCCeeeeEEeecCCCceEEEEEcC-CCCcEEEEEcC------CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
+++... +..+...+..++|+| ++. .|+.+.. ...|.++|+.++......... ....+..+
T Consensus 177 ~g~~~~---l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~---------~~~~~~~~ 243 (388)
T 3pe7_A 177 TGESTV---ILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA---------EGESCTHE 243 (388)
T ss_dssp TCCEEE---EEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC---------TTEEEEEE
T ss_pred CCceEE---eecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC---------CCcccccc
Confidence 875433 445667789999999 884 5555544 337888888766543222110 11246788
Q ss_pred EEcCCCCceEEE-ecCCC----eEEEEecccccccCCCCCCCCccccCCCCcCCCcc---cceEEEEEcCCCCeeEeec-
Q 011160 210 AIDPRNANLFAV-AGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ---VGITGLAFSDQSELLVSYN- 280 (492)
Q Consensus 210 ~~~p~~~~~l~~-~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~- 280 (492)
+|+|+ ++.|+. +..++ .|++||+.+++......+ ..+. .....+.|+|+|+.|+...
T Consensus 244 ~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-------------~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 244 FWVPD-GSALVYVSYLKGSPDRFIYSADPETLENRQLTSM-------------PACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp EECTT-SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE-------------CCEEEEEECTTSSEEEEEECCC-----
T ss_pred eECCC-CCEEEEEecCCCCCcceEEEEecCCCceEEEEcC-------------CCceeeeecCCCCeEccCCCcceeEee
Confidence 99999 555544 33222 499999988753211000 0000 0011236999999887532
Q ss_pred ---------CCcEEEEecCCC
Q 011160 281 ---------DEFIYLFTQDMG 292 (492)
Q Consensus 281 ---------~~~i~~~d~~~~ 292 (492)
+..|++||+.++
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp -------CCCCEEEEEETTTT
T ss_pred eccccccCCCCEEEEEeccCC
Confidence 347999998864
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=1.7e-20 Score=174.11 Aligned_cols=279 Identities=11% Similarity=0.043 Sum_probs=179.8
Q ss_pred EEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 64 VNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
+.+++|+|||++|+..... ..|.+|++.+++... +..++......+.|+| +++.|+.++.++.|++|++.+++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFIST--DERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECT--TSSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECC--CCCEEEEEEcCCcEEEEECCCCCc
Confidence 6778999999998876443 478889998877533 3233333333478999 999999999888999999987765
Q ss_pred eeeEEeecCCCceEE-------------------EEEcCCCCcEEEEE-----cCCCcEEEEeCCCCCccceeecCCCCC
Q 011160 141 VETKLLGKHQGRAHK-------------------LAIEPGSPHVFYTC-----GEDGLVQHFDLRTGAATELFTCRPIDD 196 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~-------------------i~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (492)
... ...+...... +.|+|++. .++.+ ..+..|.+||+.+++......
T Consensus 115 ~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~------ 185 (396)
T 3c5m_A 115 QVI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVIHQ------ 185 (396)
T ss_dssp EEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEEEE------
T ss_pred EEE--EecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEeecc------
Confidence 433 2223222222 34677774 33332 456689999999887654442
Q ss_pred CCcceeecceEEEEEcC-CCCceEEEecCC------CeEEEEecccccccCCCCCCCCccccCCCCcCCCc-ccceEEEE
Q 011160 197 RRNYMTVVNLNAIAIDP-RNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLA 268 (492)
Q Consensus 197 ~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~ 268 (492)
....+..+.|+| + +..|+..+.+ ..|.+|++..++.. .+.... ...+..++
T Consensus 186 -----~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~---------------~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 186 -----DTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDARMWLVNEDGSNVR---------------KIKEHAEGESCTHEF 244 (396)
T ss_dssp -----ESSCEEEEEEETTE-EEEEEEEECSCSSSCSCCCEEEETTSCCCE---------------ESSCCCTTEEEEEEE
T ss_pred -----CCcccccceECCCC-CCEEEEEecCCCCCCCceEEEEECCCCcee---------------EeeccCCCccccceE
Confidence 334578899999 5 5555554433 36888887654311 111111 23578899
Q ss_pred EcCCCCeeEeec-C-----CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccc
Q 011160 269 FSDQSELLVSYN-D-----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342 (492)
Q Consensus 269 ~s~~~~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (492)
|+|+|++|+..+ + ..|++||+.++.. ..+.....
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---------------------------------------~~l~~~~~- 284 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLEN---------------------------------------EEVMVMPP- 284 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCE---------------------------------------EEEEECCS-
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCe---------------------------------------EEeeeCCC-
Confidence 999999877654 2 2399999876421 11111111
Q ss_pred eeeeeEEeecC-CCcEEEEee----------------ccCeEEEEecCCCeeeEEEecCCc-----------eeEEEeec
Q 011160 343 VTVKGVNFFGP-KCEYVVSGS----------------DCGRIFIWKKKGGELIRVIEADRH-----------VVNCIEPH 394 (492)
Q Consensus 343 ~~v~~~~~~s~-~g~~l~sg~----------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~s 394 (492)
.. +.| +| +|+++++++ .++.|++||+.+++.. .+..+.. .+..++|+
T Consensus 285 --~~-~~~-s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s 359 (396)
T 3c5m_A 285 --CS-HLM-SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFT 359 (396)
T ss_dssp --EE-EEE-ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEEC
T ss_pred --CC-CCc-cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEc
Confidence 12 666 89 999888754 3478999999888754 4444543 25678999
Q ss_pred CCCCeEEEeeC-CCCEEEecc--CCCCCC
Q 011160 395 PHSTVLASSGI-ESDIKILTP--NAADRA 420 (492)
Q Consensus 395 ~~~~~l~s~~~-dg~i~iw~~--~~~~~~ 420 (492)
|+|+.|+.++. ++...+|.+ .+++..
T Consensus 360 ~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 360 PNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp TTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 99998877664 566566654 444433
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.86 E-value=2.3e-18 Score=164.28 Aligned_cols=334 Identities=13% Similarity=0.051 Sum_probs=225.1
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+.+.++++...++.|.++|..+++++ .++.. ...+..++|+|||++|++++.++.|.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~---------------------~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~v 222 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK---------------------TVLDT-GYAVHISRLSASGRYLFVIGRDGKVNM 222 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE---------------------EEEEC-SSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE---------------------EEEeC-CCCccceEECCCCCEEEEEcCCCeEEE
Confidence 34456788888999999999998877 33432 234668999999999999999999999
Q ss_pred EECC--CCceeeeeccCcCcceEEEEec----CCCCCceEEeecC-CCcEEEEecccCCeeeeEEeec--------CCC-
Q 011160 88 WDWK--TERVKLSFHSGHNDNVFQAKIM----PFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGK--------HQG- 151 (492)
Q Consensus 88 wd~~--~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~--------~~~- 151 (492)
||+. +++.+.++..+ .....++|+ | +|+++++++. ++.|.++|..+.+.+......+ |..
T Consensus 223 iD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 223 IDLWMKEPTTVAEIKIG--SEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp EETTSSSCCEEEEEECC--SEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred EECCCCCCcEeEEEecC--CCCceeEEccccCC--CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 9995 77777777332 346789999 8 8988887764 5899999998877766533322 222
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
.+..+..+++++.+++.....|.|.++|....+........ .......+.|+|++..++++...++.|.++
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~---------~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---------AERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---------CCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee---------ccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 67889999988777777788899999999876533222211 112356788999844444555578899999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC-CeeEeec--CCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
|+.++++......+ -...|.+.-..+ ++|++ .++++.. ++.|.+++..+......
T Consensus 370 D~~t~kl~~~i~vg----------g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~----------- 427 (567)
T 1qks_A 370 DTKEGKLVAIEDTG----------GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN----------- 427 (567)
T ss_dssp ETTTTEEEEEEECS----------SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT-----------
T ss_pred ECCCCcEEEEEecc----------CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc-----------
Confidence 99988765432210 001122211122 57874 4445543 56899999876321110
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec-------cCeEEEEecCCC-----e
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-------CGRIFIWKKKGG-----E 376 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-------dg~i~iwd~~~~-----~ 376 (492)
..+.++++...... -..+.. +|+++++.+... ...|.++|+.+. .
T Consensus 428 --------------------~~kvv~~i~~~g~g--~~~i~~-~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 428 --------------------AWKILDSFPALGGG--SLFIKT-HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp --------------------BTSEEEEEECSCSC--CCCEEC-CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred --------------------cCEEEEEEecCCCC--CEEEEe-CCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 02233444433221 134555 999999888652 469999999876 2
Q ss_pred e-eEEEe--------cCCceeEEEeecCCCCeEEEee-----CCCCEEEeccCCCCCCc
Q 011160 377 L-IRVIE--------ADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRAT 421 (492)
Q Consensus 377 ~-~~~~~--------~h~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~ 421 (492)
. ...+. .-...+..+.|+|+|+.+..+. .++.|.|+|..+.++..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence 1 23332 1235789999999999766553 37899999999987654
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=6.6e-20 Score=183.63 Aligned_cols=298 Identities=8% Similarity=-0.002 Sum_probs=192.3
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcc-----eEEEEecCCCCCceEEeecCC---------C
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-----VFQAKIMPFTDDRSIVTCAAD---------G 128 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~~~~~d---------g 128 (492)
...+++|+|||++|+++ |+.|++||+.+++....+ .+|... ...++||| ||++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccce
Confidence 35588999999999986 899999999999875544 555532 24478899 99999988875 5
Q ss_pred cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCC-CCCccee-----
Q 011160 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMT----- 202 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~----- 202 (492)
.+.+||+.+++... +..|...+...+|+|||. .|+.+ .++.|++|++.++............ ...++..
T Consensus 93 ~~~~~d~~~~~~~~---l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT---EERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEEETTTTEECC---SSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEEECCCCcEEE---cccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 67799998876433 566778899999999995 55655 4689999999887754322110000 0000000
Q ss_pred --ecceEEEEEcCCCCceEEEecCC-CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee
Q 011160 203 --VVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (492)
Q Consensus 203 --~~~v~~~~~~p~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (492)
......+.|+|| ++.|+.++.| +.+.+|++...... ..+...+..+.+.+.|...
T Consensus 168 e~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~------------------~~~~~~~~~~~yp~~G~~~--- 225 (740)
T 4a5s_A 168 EVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDE------------------SLQYPKTVRVPYPKAGAVN--- 225 (740)
T ss_dssp HTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCST------------------TCSSCEEEEEECCBTTSCC---
T ss_pred hhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCC------------------CCCCCcceeecCCCCcCcC---
Confidence 012245899999 6777776644 45888887543210 0123456677777766421
Q ss_pred cCCcEEEEecCC---CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc
Q 011160 280 NDEFIYLFTQDM---GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (492)
Q Consensus 280 ~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~ 356 (492)
....|++||+.+ +....... ......+.+|.. .+..+.| +|||+
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~------------------------------l~~~~~~~~~~~--~~~~~~w-spdg~ 272 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQ------------------------------ITAPASMLIGDH--YLCDVTW-ATQER 272 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEE------------------------------ECCCHHHHTSCE--EEEEEEE-EETTE
T ss_pred CeeEEEEEECCCCCCCCcceEEE------------------------------ecCCccCCCCCe--EEEEEEE-eCCCe
Confidence 112689999987 42100000 000001112333 3788998 99999
Q ss_pred EEEEeec----cCeEEEEecCCCe----e--eEEE--ecCCceeE-----EEeecCCCCeEE-EeeC-C--CCEEEeccC
Q 011160 357 YVVSGSD----CGRIFIWKKKGGE----L--IRVI--EADRHVVN-----CIEPHPHSTVLA-SSGI-E--SDIKILTPN 415 (492)
Q Consensus 357 ~l~sg~~----dg~i~iwd~~~~~----~--~~~~--~~h~~~v~-----~~~~s~~~~~l~-s~~~-d--g~i~iw~~~ 415 (492)
+++.... +..|++||+.+++ + +..+ ..|.+.|. .++|+|||+.|+ ..+. + ..|++|++.
T Consensus 273 ~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 273 ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence 7765433 3479999999887 2 2222 45665554 789999999877 5553 3 368889998
Q ss_pred CCCCCcccCc
Q 011160 416 AADRATLPTN 425 (492)
Q Consensus 416 ~~~~~~~~~~ 425 (492)
+++...+...
T Consensus 353 ~~~~~~lT~g 362 (740)
T 4a5s_A 353 KKDCTFITKG 362 (740)
T ss_dssp CSSCEESCCS
T ss_pred CCceEecccC
Confidence 8776665443
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=3.9e-18 Score=153.47 Aligned_cols=262 Identities=14% Similarity=0.123 Sum_probs=173.9
Q ss_pred cceEEEEEEcCCCCEEEEecCC------------------------CeEEEEECCCCceeeeeccCcCcceEEEEecCCC
Q 011160 61 RGCVNTVSFNTDGDILISGSDD------------------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 116 (492)
-+.+.+++++|+|+++++...+ ++|.+||..+++....+..++-.....+++.|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence 4679999999999999988877 47999999889887666445556889999999
Q ss_pred CCceEEeecCCCcEEEEecccCC-eeeeEEe---------ecCCCceEEEEEcC-CCCcEEEEEc-CCCcEEEEeCCCCC
Q 011160 117 DDRSIVTCAADGQVRHAQILERG-GVETKLL---------GKHQGRAHKLAIEP-GSPHVFYTCG-EDGLVQHFDLRTGA 184 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~---------~~~~~~v~~i~~~~-~~~~~l~~~~-~dg~i~iwd~~~~~ 184 (492)
+++++++...++.|++|+..... .+.. + ..+...+..++++| ++ .++++.+ .++.|++|+ .++.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~--~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~~g~ 176 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLI--LGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-PSGK 176 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEE--ESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-TTSC
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEE--ecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-CCCC
Confidence 99988888889999999975432 2222 2 23445689999999 56 6777776 689999999 4555
Q ss_pred ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccce
Q 011160 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (492)
.+..+...................++++|+++.++++...++.|++|+..+++....... ..+...+
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-------------~~~~~~~ 243 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-------------ASFGRNV 243 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-------------TTTTTCE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-------------cccCCCc
Confidence 544432111000000001223566777776456666666667777777654432211000 0011122
Q ss_pred EEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccccee
Q 011160 265 TGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (492)
Q Consensus 265 ~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (492)
..++++| +.
T Consensus 244 ~~~~~~p-g~---------------------------------------------------------------------- 252 (329)
T 3fvz_A 244 FAISYIP-GF---------------------------------------------------------------------- 252 (329)
T ss_dssp EEEEEET-TE----------------------------------------------------------------------
T ss_pred ceeeecC-CE----------------------------------------------------------------------
Confidence 2333333 10
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe---cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
.+ ..+|+..++...+..|++|+..+++.+..+. ++...+..++++|+|.++++...+++|++|++...
T Consensus 253 ----~~-~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 253 ----LF-AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ----EE-EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred ----EE-EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 00 1133333344456689999999999998884 56677999999999988888888999999999764
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=2.4e-18 Score=156.47 Aligned_cols=269 Identities=8% Similarity=-0.003 Sum_probs=178.7
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec----------CCCcEEEEecccCCeeeeEEeec--
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQILERGGVETKLLGK-- 148 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~-- 148 (492)
.|+.|.+||..+++.+..+ ..+..+ .++|+| ++++++++. .++.|.+||..+.+.+....+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEE-ECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred ccCeEEEEECCCCeEEEEe-cCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 4789999999999987777 344444 899999 999999886 35779999998877665533221
Q ss_pred --CCCceEEEEEcCCCCcEEEEEcC--CCcEEEEeCCCCCccce-eecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 149 --HQGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 149 --~~~~v~~i~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
+......++++|+|. +|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++...+++.+
T Consensus 104 ~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~------------~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAA------------GCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGT------------TEEEEEECTTSSSEEEEEE
T ss_pred cccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCC------------CcceeEEcCCCCeeEEEEC
Confidence 224567899999995 5666543 68999999999877655 4321 1223567787557788888
Q ss_pred CCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCC
Q 011160 224 SDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSS 301 (492)
Q Consensus 224 ~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~ 301 (492)
.||.+.+|++.. ++...... ..........+ ..+.+++++..++..+ ++.++++|+......
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~---------~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~------ 234 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSR---------SKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK------ 234 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEE---------CCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE------
T ss_pred CCCcEEEEEECCCCcEeeecc---------ccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce------
Confidence 999999998864 32210000 00000111111 1222355665544444 668999998643110
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCccccCCceee------cccc--ceeeeeEEeecCCCcEEEEeec----------
Q 011160 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK------GHRN--CVTVKGVNFFGPKCEYVVSGSD---------- 363 (492)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~v~~~~~~s~~g~~l~sg~~---------- 363 (492)
....+. .+.. ......++| +|+++.++++..
T Consensus 235 ------------------------------~~~~~~~~~~~~~~~~~~p~g~~~~a~-~~dg~~lyv~~~~~~~~~~~~~ 283 (361)
T 2oiz_A 235 ------------------------------VDGPWSLLNDEDKAKNWVPGGYNLVGL-HRASGRMYVFMHPDGKEGTHKF 283 (361)
T ss_dssp ------------------------------EEEEEESCCHHHHHTTCEECCSSCEEE-ETTTTEEEEEEESSCCTTCTTC
T ss_pred ------------------------------ecccccccCccccccccccCCeeEEEE-ecCCCeEEEEEccCCCcccccC
Confidence 000000 0000 000123566 999888776543
Q ss_pred -cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 364 -CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 364 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
.+.|.+||+.+++.+..+..+. +.+++|+|||++|++++. ++|.+||..++
T Consensus 284 ~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 284 PAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999999999999999887 999999999999998886 99999999998
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=4.3e-17 Score=147.29 Aligned_cols=277 Identities=14% Similarity=0.126 Sum_probs=181.8
Q ss_pred CCCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 1 ~~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
|..+.|++++..++..+.++.+++|. ++.. ..+..+...+.+++|+|+|++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~~~~~~~~~~~~~g~l~~~~~ 63 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEPW---------------------LEISKKGLQLEGLNFDRQGQLFLLDV 63 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE---------------------EEEESSCCCEEEEEECTTSCEEEEET
T ss_pred cceeeecCCccceeEEeecccCcccc---ccee---------------------EEEeccCccccCcEECCCCCEEEEEC
Confidence 34678888888888888899999992 3322 44556667789999999999888888
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC----CcEEEEecccCCeeeeEEeecCCCceEEE
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~~~~~v~~i 156 (492)
.++.|.+||..+++..... ..+...+.+++++| +++++++...+ +.|.+|+..++..........+...+.++
T Consensus 64 ~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~--dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i 140 (333)
T 2dg1_A 64 FEGNIFKINPETKEIKRPF-VSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDM 140 (333)
T ss_dssp TTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEE
T ss_pred CCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECC--CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccce
Confidence 8999999999887764433 34567899999999 88877777665 68999998776543221111244578999
Q ss_pred EEcCCCCcEEEEEcC------CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEE
Q 011160 157 AIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i 230 (492)
+++|++ .++++... .+.|..++..+++...... ....+..++|+|++..++++.+.++.|.+
T Consensus 141 ~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 141 VFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------NISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp EECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeec-----------CCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 999998 46555543 2456666655444322211 12235677788773224444555677777
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
|++.+... .+..+. + .+
T Consensus 209 ~d~~~~g~------------------------~~~~~~--~-------------~~------------------------ 225 (333)
T 2dg1_A 209 IALEDDGV------------------------TIQPFG--A-------------TI------------------------ 225 (333)
T ss_dssp EEECTTSS------------------------SEEEEE--E-------------EE------------------------
T ss_pred EEecCCCc------------------------Cccccc--c-------------eE------------------------
Confidence 77643100 000000 0 00
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCc----
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH---- 386 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~---- 386 (492)
...+.++. .+..+++ +++|+++++...++.|.+|+. +++.+..+..+..
T Consensus 226 ----------------------~~~~~~~~---~~~~i~~-d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 226 ----------------------PYYFTGHE---GPDSCCI-DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGH 278 (333)
T ss_dssp ----------------------EEECCSSS---EEEEEEE-BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTC
T ss_pred ----------------------EEecCCCC---CCCceEE-CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcccc
Confidence 00011111 1567887 999998888877899999998 6777777765543
Q ss_pred --eeEEEeecCCCCeEEEeeCC
Q 011160 387 --VVNCIEPHPHSTVLASSGIE 406 (492)
Q Consensus 387 --~v~~~~~s~~~~~l~s~~~d 406 (492)
.+.+++|+|+++.|+.++.+
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEEC
T ss_pred ccCcceEEECCCCCEEEEEeCc
Confidence 68999999998776655544
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=1.1e-18 Score=173.29 Aligned_cols=322 Identities=9% Similarity=-0.057 Sum_probs=192.2
Q ss_pred CCCCCCceEeec--cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEE---------EEEEc--C
Q 011160 5 SNNNNNKRARTS--VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN---------TVSFN--T 71 (492)
Q Consensus 5 ~~~~~~~~l~t~--~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~ 71 (492)
.+++++-.++.. +.++..+||....+... +.+..|...+. ...|+ |
T Consensus 30 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~l~~~~~~~~~~~~~~~~~~~~~~~SP 88 (662)
T 3azo_A 30 GAVGDEVWWVAPRPAEAGRATLVRRRADGAE---------------------ESALPAPWNVRNRVFEYSGFPWAGVPRP 88 (662)
T ss_dssp EEETTEEEEEEEETTTTTEEEEEEECTTSCE---------------------EESSCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred EEcCCeEEEEecCcccCCcEEEEEECCCCCc---------------------ceeCCCCccccccccccCCccceeeeec
Confidence 345655556666 66889999986444322 34455555544 55565 9
Q ss_pred CCCE-EEEecC-CCeEEEEECC--C-CceeeeeccC-----cCcceEEEEecCCCCCceEEeecCC----------CcEE
Q 011160 72 DGDI-LISGSD-DRRVILWDWK--T-ERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCAAD----------GQVR 131 (492)
Q Consensus 72 ~~~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d----------g~v~ 131 (492)
||++ |+.++. +..|.+|++. . +. ...+ .. |...+..++|+| +|+.|++++.+ ..|+
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCC-CEec-cCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEE
Confidence 9988 776554 5667777765 2 43 3344 33 667889999999 99999988876 5899
Q ss_pred EEeccc------CCeeeeEEee-cCCCceEEEEEcCCCCcEEEEEcCC--------CcEEEEeCC-CC---CccceeecC
Q 011160 132 HAQILE------RGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLR-TG---AATELFTCR 192 (492)
Q Consensus 132 iw~~~~------~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~ 192 (492)
+|++.+ +... .+. .+...+..++|+|||. .|+.++.+ ..|++||+. ++ +.......
T Consensus 165 ~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~- 239 (662)
T 3azo_A 165 AVPLDGSAAADRSAVR---ELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG- 239 (662)
T ss_dssp EEETTSTTTTCGGGSE---ESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE-
T ss_pred EEECCCCccccCCcee---EEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC-
Confidence 999977 4332 244 5567788899999995 66666544 379999998 56 22222211
Q ss_pred CCCCCCcceeecceEEEEEcCCCCceEEEecCCC--eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc
Q 011160 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (492)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 270 (492)
+...+..++|+|+ +++++++..++ .|.+||+.+++....... ......+ .-...+..++|+
T Consensus 240 ---------~~~~~~~~~~spd-g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p-----~w~~~~~~~~~~ 302 (662)
T 3azo_A 240 ---------PEEAIAQAEWAPD-GSLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGP-----LWTPGMRWFAPL 302 (662)
T ss_dssp ---------TTBCEEEEEECTT-SCEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCC-----CCSTTCCSEEEC
T ss_pred ---------CCceEcceEECCC-CeEEEEECCCCCeEEEEEECCCCceeecccc--cccccCc-----cccccCceEeEe
Confidence 1346789999998 55888888888 666677655542211100 0000000 000114568999
Q ss_pred CCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeE-E
Q 011160 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV-N 349 (492)
Q Consensus 271 ~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~ 349 (492)
|+++++++++.+.+++|.++.. ...+..+..+... +..+ .
T Consensus 303 ~~~~~~~~~~~~~~~l~~~d~~-------------------------------------~~~~~~l~~~~~~--~~~~~s 343 (662)
T 3azo_A 303 ANGLIAVVHGKGAAVLGILDPE-------------------------------------SGELVDAAGPWTE--WAATLT 343 (662)
T ss_dssp TTSCEEEEEBSSSCEEEEEETT-------------------------------------TTEEEECCSSCCE--EEEEEE
T ss_pred CCCEEEEEEEcCccEEEEEECC-------------------------------------CCcEEEecCCCCe--EEEEEe
Confidence 9999888877666777744321 0113444444433 5555 4
Q ss_pred eecCCCcEEEEeeccC--eEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 350 FFGPKCEYVVSGSDCG--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 350 ~~s~~g~~l~sg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
+ +++.-++++++.+. .|++|++.+++.......+...+....+++...+.+.+..+..|..|-
T Consensus 344 ~-~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~ 408 (662)
T 3azo_A 344 V-SGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI 408 (662)
T ss_dssp E-ETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred c-CCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence 4 44433444455554 566667777776554455544444445554444444443334565554
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=6.9e-19 Score=174.62 Aligned_cols=296 Identities=11% Similarity=0.048 Sum_probs=189.9
Q ss_pred eecCccceEEEEEEcCCCCEEEEe--cCCCeEEEEECCCCceeeeeccCcCcceE---------EEEec--CCCCCce-E
Q 011160 56 KLDKHRGCVNTVSFNTDGDILISG--SDDRRVILWDWKTERVKLSFHSGHNDNVF---------QAKIM--PFTDDRS-I 121 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~~-l 121 (492)
.+.+|...|..++|++++-++++. +.++...||....+.....+ ..|...+. ...|+ | |++. |
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SP--Dg~~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRP--AGGPLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCS--SSSCEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeec--CCCeEE
Confidence 356788999999999887777777 66889999996544444555 45555555 55565 8 9988 7
Q ss_pred EeecC-CCcEEEEecc--c-CCeeeeEEeec-----CCCceEEEEEcCCCCcEEEEEcCC----------CcEEEEeCCC
Q 011160 122 VTCAA-DGQVRHAQIL--E-RGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGED----------GLVQHFDLRT 182 (492)
Q Consensus 122 ~~~~~-dg~v~iw~~~--~-~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~~d----------g~i~iwd~~~ 182 (492)
+.++. +..|.+|++. . +.. .. +.. |...+..++|+|+|. .|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~-~~--l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVP-RP--LTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCC-EE--CSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEECCCCeEEEEcCCCCCCCCC-Ee--ccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCC
Confidence 65543 5667677664 2 332 22 444 567789999999995 67777665 5799999987
Q ss_pred ------CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC--------CeEEEEecc-cccccCCCCCCCC
Q 011160 183 ------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIR-KYKWDGSTDFGQP 247 (492)
Q Consensus 183 ------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~v~i~d~~-~~~~~~~~~~~~~ 247 (492)
++....... +...+..++|+|+ ++.|+.++.+ ..|++||+. +++...
T Consensus 171 ~~~~~~~~~~~l~~~----------~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~------- 232 (662)
T 3azo_A 171 SAAADRSAVRELSDD----------AHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD------- 232 (662)
T ss_dssp TTTTCGGGSEESSCS----------CSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE-------
T ss_pred CccccCCceeEEEec----------CCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc-------
Confidence 443222101 2235677899998 6777766644 479999998 441100
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC--cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
...+...+...+..++|+|+|++++++. ++ .|++|++.++.....
T Consensus 233 -----~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l--------------------------- 280 (662)
T 3azo_A 233 -----TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL--------------------------- 280 (662)
T ss_dssp -----EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES---------------------------
T ss_pred -----cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec---------------------------
Confidence 1112223356789999999999777666 44 466776644321110
Q ss_pred CCCccccCCceeeccccc------eeeeeEEeecCCCcEEEEeeccCeEEEE--ecCCCeeeEEEecCCceeEEE-eecC
Q 011160 325 ANTDVRIAPQVYKGHRNC------VTVKGVNFFGPKCEYVVSGSDCGRIFIW--KKKGGELIRVIEADRHVVNCI-EPHP 395 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~------~~v~~~~~~s~~g~~l~sg~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~-~~s~ 395 (492)
...+... ..+..++| +|+++++++++. +.++|| |+.+++ +..+..|...+..+ ++++
T Consensus 281 -----------~~~~~~~~~p~w~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~ 346 (662)
T 3azo_A 281 -----------CRREEEFAGPLWTPGMRWFAP-LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG 346 (662)
T ss_dssp -----------SCCSSBSSCCCCSTTCCSEEE-CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET
T ss_pred -----------ccccccccCccccccCceEeE-eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCC
Confidence 0000000 00346777 899999999998 999999 555555 67788887778877 5544
Q ss_pred CCCeEEEeeCCC--CEEEeccCCCCCCcc
Q 011160 396 HSTVLASSGIES--DIKILTPNAADRATL 422 (492)
Q Consensus 396 ~~~~l~s~~~dg--~i~iw~~~~~~~~~~ 422 (492)
+.-++++++.+. .|.+|++.+++...+
T Consensus 347 ~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 347 TRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp TEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 333445555554 455556667665443
No 174
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=6.4e-19 Score=161.20 Aligned_cols=248 Identities=10% Similarity=0.065 Sum_probs=159.3
Q ss_pred CCCCCCCceEeeccCcceEEEEeec-cCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCE--EEEec
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRE-LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI--LISGS 80 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~~ 80 (492)
+.++|++++|++++.+ .|.+|++. +|++.. ......+ +.+.+++|+|+|++ ++++.
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-------------------~~~~~~~-g~~~~~~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-------------------EASHPIG-GHPRANDADTNTRAIFLLAAK 103 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-------------------EEEEECC-SSGGGGCTTSCCEEEEEEECS
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEE-------------------eeEeecC-CCCccEEECCCCCEEEEEEec
Confidence 4578999999888877 99999997 676541 0111111 12445899999994 55654
Q ss_pred -------------CCCeEEEEECC-CCceeeeec---cCcCcceEEEEecCCCCCceEEeec-CCCcEEEEecc-cCCee
Q 011160 81 -------------DDRRVILWDWK-TERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQIL-ERGGV 141 (492)
Q Consensus 81 -------------~d~~i~iwd~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~-~~~~~ 141 (492)
.++.+.+|++. +++....+. ..+...+.+++|+| +|++|+++. .++.|++|++. +++..
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence 68999999997 455433331 12456799999999 999888765 46799999998 55543
Q ss_pred eeEEee--cCCCceEEEEEcCCCCcEEEEEc-CCCcEEEEeCC--CCCccc---eeecCCCCCCCcceeec------ceE
Q 011160 142 ETKLLG--KHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLR--TGAATE---LFTCRPIDDRRNYMTVV------NLN 207 (492)
Q Consensus 142 ~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~~---~~~~~~~~~~~~~~~~~------~v~ 207 (492)
....+. .|...+..++|+|+|. ++++++ .++.|.+|++. +++... .+...+. ...+ +.. .+.
T Consensus 182 ~~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~ 257 (365)
T 1jof_A 182 LVGSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP-GIPD--RDPETGKGLYRA 257 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT-TCCC--BCTTTSSBSEEE
T ss_pred EeeeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC-CcCC--cccccccccccc
Confidence 322232 2456789999999995 555554 57899999765 454321 1211110 0001 111 478
Q ss_pred EEE-EcCCCCceEEEecCC-C-----eEEEEecc-cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC---CCCee
Q 011160 208 AIA-IDPRNANLFAVAGSD-E-----YTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSELL 276 (492)
Q Consensus 208 ~~~-~~p~~~~~l~~~~~d-g-----~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l 276 (492)
.++ |+|+ +++|+++..+ . .|.+|++. ++++... ......+...+..++|+| +|++|
T Consensus 258 ~i~~~spd-G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~------------~~~~~~~~~~~~~~a~sp~~~dg~~l 324 (365)
T 1jof_A 258 DVCALTFS-GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ------------LFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp EEEEECTT-SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE------------EEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred cEEEECCC-CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe------------eeeeecCCCCcccceecCCCcCCCEE
Confidence 899 9998 5666665533 2 89999986 3332110 000111122345688999 89999
Q ss_pred EeecC--CcEEEEecCC
Q 011160 277 VSYND--EFIYLFTQDM 291 (492)
Q Consensus 277 ~~~~~--~~i~~~d~~~ 291 (492)
++++. +.|.+|+++.
T Consensus 325 ~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 325 AITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEECSSSCEEEEEEEET
T ss_pred EEEEcCCCeEEEEEEch
Confidence 88873 5899999875
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.3e-16 Score=140.62 Aligned_cols=246 Identities=14% Similarity=0.198 Sum_probs=167.5
Q ss_pred cCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc-----CcCcceEEEEec-CCCCCceEEeecC-CCcE
Q 011160 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS-----GHNDNVFQAKIM-PFTDDRSIVTCAA-DGQV 130 (492)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~~l~~~~~-dg~v 130 (492)
.+|-....+++++++++++++...++.|.+|+.. ++.+..+.. ++...+..+++. + ++.++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN--SGDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT--TTEEEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC--CCeEEEEcCCCCCEE
Confidence 4566788999999999998988889999999977 555555421 244578899994 6 6776666643 7899
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
.+|+ .++...... ...+...+.++++.|++ +++++...++.|.+||.. ++....+.... ....+..++
T Consensus 103 ~~~d-~~g~~~~~~-~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~--------~~~~p~~i~ 170 (286)
T 1q7f_A 103 QIYN-QYGQFVRKF-GATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSK--------HLEFPNGVV 170 (286)
T ss_dssp EEEC-TTSCEEEEE-CTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTT--------TCSSEEEEE
T ss_pred EEEC-CCCcEEEEe-cCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCC--------ccCCcEEEE
Confidence 9999 445444321 12344578999999998 577777778899999964 33333332110 112356777
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
++|+ ++++++...++.|++|+..... +. .+..
T Consensus 171 ~~~~-g~l~v~~~~~~~i~~~~~~g~~--------------------------~~--~~~~------------------- 202 (286)
T 1q7f_A 171 VNDK-QEIFISDNRAHCVKVFNYEGQY--------------------------LR--QIGG------------------- 202 (286)
T ss_dssp ECSS-SEEEEEEGGGTEEEEEETTCCE--------------------------EE--EESC-------------------
T ss_pred ECCC-CCEEEEECCCCEEEEEcCCCCE--------------------------EE--EEcc-------------------
Confidence 7776 5566666666777777653210 00 0000
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC-eEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFI 369 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg-~i~i 369 (492)
.++.. .+..+++ +++|+++++...++ .|++
T Consensus 203 ----------------------------------------------~g~~~--~p~~i~~-d~~G~l~v~~~~~~~~i~~ 233 (286)
T 1q7f_A 203 ----------------------------------------------EGITN--YPIGVGI-NSNGEILIADNHNNFNLTI 233 (286)
T ss_dssp ----------------------------------------------TTTSC--SEEEEEE-CTTCCEEEEECSSSCEEEE
T ss_pred ----------------------------------------------CCccC--CCcEEEE-CCCCCEEEEeCCCCEEEEE
Confidence 00001 1567887 99999988888776 9999
Q ss_pred EecCCCeeeEEEecCCc--eeEEEeecCCCCeEEEeeCCCCEEEeccCCC
Q 011160 370 WKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (492)
Q Consensus 370 wd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (492)
|+. +++.+..+..+.. .+.+++++|+|+++++ +.|++|++|++...
T Consensus 234 ~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 234 FTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 995 6777777765543 4789999999987777 57999999998653
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=2.3e-18 Score=159.70 Aligned_cols=233 Identities=10% Similarity=0.005 Sum_probs=150.4
Q ss_pred CCCCCCCCceEeeccCc---ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccce-EEEEEEcCCCCEEEE
Q 011160 3 DASNNNNNKRARTSVDK---ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNTDGDILIS 78 (492)
Q Consensus 3 ~~~~~~~~~~l~t~~~d---g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s 78 (492)
.+.++|+|++|+..... ..|.+||+.+++.. .+..+... ...+.|+|||++|+.
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------~l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------QLTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------ECCCSSCBCTTTCEECTTSSEEEE
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------EeecCCCCccccceECCCCCEEEE
Confidence 45689999997766432 46888888876643 12222223 234789999999999
Q ss_pred ecCCCeEEEEECCCCceeeeeccCcCcceEE-------------------EEecCCCCCceEEee-----cCCCcEEEEe
Q 011160 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQ-------------------AKIMPFTDDRSIVTC-----AADGQVRHAQ 134 (492)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~~~-----~~dg~v~iw~ 134 (492)
++.++.|++|++.+++..... ..+...... +.|+| +++.++.+ ..+..|.+||
T Consensus 98 ~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHHHHHHTCCCEEEEEEE
T ss_pred EEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCC--CCcceeeeeeccCCCcceEEEEE
Confidence 999999999999888764433 333332222 35677 77776654 3567899999
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcC-CCCcEEEEEcCC------CcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
+.+++... +..+...+..+.|+| ++. .|+..+.+ ..|.+|++.+++...... .. ....+.
T Consensus 175 ~~~g~~~~---~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~--------~~~~~~ 241 (396)
T 3c5m_A 175 IETGELEV---IHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HA--------EGESCT 241 (396)
T ss_dssp TTTCCEEE---EEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CC--------TTEEEE
T ss_pred CCCCcEEe---eccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCceeEeec-cC--------CCcccc
Confidence 98766543 334667889999999 674 44544433 368888987665332221 00 122477
Q ss_pred EEEEcCCCCceEEEecCC-----CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC-CCCeeEeec-
Q 011160 208 AIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN- 280 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~- 280 (492)
.++|+|+ ++.|+.++.+ +.|++||+.+++.... .. ..... +.|+| +|++++.++
T Consensus 242 ~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l---------------~~--~~~~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 242 HEFWIPD-GSAMAYVSYFKGQTDRVIYKANPETLENEEV---------------MV--MPPCS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp EEEECTT-SSCEEEEEEETTTCCEEEEEECTTTCCEEEE---------------EE--CCSEE-EEEECSSSSEEEEEEC
T ss_pred ceEECCC-CCEEEEEecCCCCccceEEEEECCCCCeEEe---------------ee--CCCCC-CCccCCCCceEEEecC
Confidence 8999998 5655555433 4599999987643210 00 00122 88999 999887643
Q ss_pred ----------------CCcEEEEecCCC
Q 011160 281 ----------------DEFIYLFTQDMG 292 (492)
Q Consensus 281 ----------------~~~i~~~d~~~~ 292 (492)
+..|++||+.++
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTT
T ss_pred CcceeeccccccccCCCCcEEEEecccC
Confidence 246999998764
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=3e-17 Score=149.24 Aligned_cols=266 Identities=13% Similarity=0.156 Sum_probs=171.8
Q ss_pred ceEEEEEEcCCCCEEEEec---------CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC---C-
Q 011160 62 GCVNTVSFNTDGDILISGS---------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G- 128 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g- 128 (492)
..+..+++ ||++|+... .++.|.+|++.+++.. .+ ..+..++|+| +|++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-----~~~~~~~~Sp--Dg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-----ENATMPRISP--DGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-----ESCEEEEECT--TSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-----ccCCCeEECC--CCCEEEEEEeccCCCc
Confidence 45677777 888887642 2567999999887653 33 4688999999 99999877643 3
Q ss_pred -cEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC---------------------------CCcEEEEeC
Q 011160 129 -QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---------------------------DGLVQHFDL 180 (492)
Q Consensus 129 -~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---------------------------dg~i~iwd~ 180 (492)
.|.+|++.+++.... ..+.. +..++|+|++. .|+.++. ...|.+||+
T Consensus 85 ~~l~~~~~~~g~~~~l---~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 85 SEIWVADLETLSSKKI---LEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEEEEETTTTEEEEE---EEESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred ceEEEEECCCCceEEE---EcCCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 377778776554332 22333 89999999995 5555542 256899999
Q ss_pred CCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC-------eEEEEecccccccCCCCCCCCccccCC
Q 011160 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-------YTRLYDIRKYKWDGSTDFGQPADYFCP 253 (492)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~v~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (492)
.+++.+..+. .. .+..++|+|+ + +++++..++ ...+|.+.+++..
T Consensus 160 ~~~~~~~~l~-----------~~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-------------- 211 (347)
T 2gop_A 160 ESEEVIEEFE-----------KP-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-------------- 211 (347)
T ss_dssp TTTEEEEEEE-----------EE-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEEEEETTEEE--------------
T ss_pred CCCeEEeeec-----------CC-CcccccCCCC-e-EEEEEecccccccccccccEEEeCCCceE--------------
Confidence 8887633333 11 4678899998 5 766665432 3344444333211
Q ss_pred CCcCCCcccceEEEEEcCCCCeeEeec-CC--------cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DE--------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~--------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
.+. .+ ..+..+ +|+|++|+..+ ++ .|++|+ ++
T Consensus 212 -~l~-~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-------------------------------- 252 (347)
T 2gop_A 212 -KMF-EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-------------------------------- 252 (347)
T ss_dssp -EEE-EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--------------------------------
T ss_pred -Eec-cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--------------------------------
Confidence 111 12 334444 99999887665 22 477777 32
Q ss_pred CCCccccCCceeeccccceeeee-EEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEe
Q 011160 325 ANTDVRIAPQVYKGHRNCVTVKG-VNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (492)
.......++... +.. +.| + ++ ++++++.++.++|| +.+++... +..+.+.|.+++|+| .+++++
T Consensus 253 ------~~~~l~~~~~~~--~~~~~~~-s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 253 ------EVMGILDEVDRG--VGQAKIK-D-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp ------CEEESSTTCCSE--EEEEEEE-T-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEE
T ss_pred ------ceEeccccCCcc--cCCccEE-c-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEE
Confidence 111112223332 555 777 8 88 99999999999999 88666544 444577899999999 677777
Q ss_pred eCCCCE-EEeccCCCCCCcccCc
Q 011160 404 GIESDI-KILTPNAADRATLPTN 425 (492)
Q Consensus 404 ~~dg~i-~iw~~~~~~~~~~~~~ 425 (492)
+.++.. .+|.+. ++...+..+
T Consensus 318 ~~~~~~~~l~~~~-g~~~~lt~~ 339 (347)
T 2gop_A 318 ETATRLRELFTWD-GEEKQLTDY 339 (347)
T ss_dssp ECSSSCCEEEEES-SSEEECCCT
T ss_pred cCCCChHHheEeC-CcEEEeccc
Confidence 777665 788776 554444433
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.79 E-value=4e-15 Score=132.09 Aligned_cols=285 Identities=10% Similarity=0.030 Sum_probs=192.6
Q ss_pred cCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc
Q 011160 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (492)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 137 (492)
..+...+.++++.++|+++++...++.|.+|+.. +.........+...+.++++.+ ++.++++...++.|..|+..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC-
Confidence 3455689999999999988877778899999988 5543322233456799999999 88888877778889999975
Q ss_pred CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
+. .....+......+.++++.+++ .++++...++.|..||. +++... +.... ....+..++++++ +.
T Consensus 87 g~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~--------~~~~~~~i~~~~~-g~ 153 (299)
T 2z2n_A 87 GI-IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIRE-YELPN--------KGSYPSFITLGSD-NA 153 (299)
T ss_dssp SC-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-SC
T ss_pred Cc-EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEE-ecCCC--------CCCCCceEEEcCC-CC
Confidence 32 2222233345678999999988 57677777889999998 554332 21110 1235789999998 56
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCC
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPN 296 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~ 296 (492)
++++...++.|..||. +++.... ........+.+++++++|+++++.. .+.|.+|+. ++..
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~~--------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-- 215 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITEF--------------KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-- 215 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEE--------------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--
T ss_pred EEEEeCCCCEEEEEcC-CCcEEEe--------------eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--
Confidence 7777777789999998 5442210 0111234678999999998777665 568999987 4310
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
.......+.. .+.++++ +++|++.++...++.|.+|+. +++
T Consensus 216 -----------------------------------~~~~~~~~~~--~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 216 -----------------------------------TEFKIPTPNA--RPHAITA-GAGIDLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp -----------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEEET-TTE
T ss_pred -----------------------------------EEEECCCCCC--CceeEEE-CCCCCEEEeccCCceEEEECC-CCc
Confidence 0000111112 2678888 999997777667889999998 555
Q ss_pred eeEE-EecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 377 LIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 377 ~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
.... +..+...+.++++ ++++++++.. .+.|..+++.+++
T Consensus 257 ~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 257 IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 3322 2344567899999 8888777665 5677777776643
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=2.3e-16 Score=157.35 Aligned_cols=251 Identities=8% Similarity=-0.063 Sum_probs=161.0
Q ss_pred CccceEEEEEEcCCCCEEEEecCCC-----eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCc----
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---- 129 (492)
+|...+..++|||||++||.+..++ .|++||+.+++...... .+ ..+..++|+| |++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wsp--Dg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTH--DGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEe--CCCEEEEEEECCccccc
Confidence 4556789999999999998765433 89999999998765432 22 2367899999 9999998887765
Q ss_pred ------------EEEEecccCCeeeeEEee--cCCCceEEEEEcCCCCcEEEEEcC-----CCcEEEEeCCC------CC
Q 011160 130 ------------VRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGE-----DGLVQHFDLRT------GA 184 (492)
Q Consensus 130 ------------v~iw~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~ 184 (492)
|++|++.++.......+. .|...+..+.|+|+|. .|+.++. +..|++||+.+ +.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 999999876532222122 2455678999999996 4554443 56899999876 32
Q ss_pred -ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC---CeEEEEecccccccCCCCCCCCccccCCCCcCCCc
Q 011160 185 -ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (492)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (492)
....+... ...+.. .|+|++..+++.+..+ +.|.+||+.++.
T Consensus 277 ~~~~~l~~~----------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----------------------- 322 (710)
T 2xdw_A 277 LKWVKLIDN----------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE----------------------- 322 (710)
T ss_dssp CCCEEEECS----------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-----------------------
T ss_pred cceEEeeCC----------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-----------------------
Confidence 12222111 011111 3455532222222211 134444443211
Q ss_pred ccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccc
Q 011160 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (492)
Q Consensus 261 ~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (492)
......+..|.
T Consensus 323 ---------------------------------------------------------------------~~~~~~l~~~~ 333 (710)
T 2xdw_A 323 ---------------------------------------------------------------------ESKWKVLVPEH 333 (710)
T ss_dssp ---------------------------------------------------------------------GGGCEEEECCC
T ss_pred ---------------------------------------------------------------------cccceeccCCC
Confidence 00112233332
Q ss_pred cceeeeeEEeecCCCcEEEEeeccCe--EEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEe----eCCCCEEEecc
Q 011160 341 NCVTVKGVNFFGPKCEYVVSGSDCGR--IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS----GIESDIKILTP 414 (492)
Q Consensus 341 ~~~~v~~~~~~s~~g~~l~sg~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----~~dg~i~iw~~ 414 (492)
....+..+.| ++++.++++...++. |++|++.+|+.+..+..+.+.+..++++|++..|+.. ...++|++||+
T Consensus 334 ~~~~~~~~~~-~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 334 EKDVLEWVAC-VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp SSCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCCeEEEEEE-EcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 2123667777 778888888888884 6667877888888888888889999999999765532 23578999999
Q ss_pred CCCC
Q 011160 415 NAAD 418 (492)
Q Consensus 415 ~~~~ 418 (492)
.+++
T Consensus 413 ~tg~ 416 (710)
T 2xdw_A 413 TKEE 416 (710)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 8876
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=5.6e-16 Score=139.07 Aligned_cols=287 Identities=12% Similarity=0.099 Sum_probs=189.4
Q ss_pred cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 011160 17 VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96 (492)
Q Consensus 17 ~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 96 (492)
..+++|.+||.+++++....+.... -.........+++. .++++++...++.|.+||..+++.+
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n---------------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~ 77 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRAN---------------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV 77 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHH---------------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhc---------------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE
Confidence 3489999999999887633211000 00112345667774 3556666667799999999999988
Q ss_pred eeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec---CCCceEEEEEcCCCCcEEEEEc-CC
Q 011160 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK---HQGRAHKLAIEPGSPHVFYTCG-ED 172 (492)
Q Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~-~d 172 (492)
.++ . .......+++++ ++..+++...++.|.+||..+++......... .......+++ .++ .++++.. .+
T Consensus 78 ~~i-~-~~~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~ 151 (328)
T 3dsm_A 78 GRI-T-GFTSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQ 151 (328)
T ss_dssp EEE-E-CCSSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTC
T ss_pred EEc-C-CCCCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCC
Confidence 877 2 346788999988 88555555478999999998876554422221 1114566777 333 4555544 48
Q ss_pred CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC----------CeEEEEecccccccCCC
Q 011160 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----------EYTRLYDIRKYKWDGST 242 (492)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~v~i~d~~~~~~~~~~ 242 (492)
+.|.++|+.+++....+... .....++++|+ +++++++..+ +.|.++|..+++.....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-----------~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~ 219 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-----------IQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF 219 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-----------SCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-----------CCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE
Confidence 89999999999877666531 13467889998 5666666554 78999999887643321
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (492)
.+ ........++++|++++|+++.. .|.+||..++.....
T Consensus 220 ~~--------------~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~------------------------- 259 (328)
T 3dsm_A 220 KF--------------KLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVR------------------------- 259 (328)
T ss_dssp EC--------------CTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSS-------------------------
T ss_pred ec--------------CCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeee-------------------------
Confidence 11 01135789999999998887766 899999877532110
Q ss_pred CCCCCccccCCceeeccccceeeeeEEeecC-CCcEEEEe----eccCeEEEEecCCCeeeEEEecCCceeEEEee
Q 011160 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSG----SDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (492)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~g~~l~sg----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (492)
..+..... ....+++ +| ++.++++. ..++.|.+||.. ++.+..+..- .....++|
T Consensus 260 -----------~~~~~~~~--~p~gi~v-dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 260 -----------PFLEFRDT--KYYGLTV-NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp -----------CSBCCCSS--CEEEEEE-CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred -----------eeecCCCC--ceEEEEE-cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 00111111 2577888 98 56666666 678999999997 9988888642 23456665
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=3.2e-16 Score=138.20 Aligned_cols=243 Identities=12% Similarity=0.151 Sum_probs=166.8
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEE-cCCCCEEEEecC-
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF-NTDGDILISGSD- 81 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~- 81 (492)
+.+.+++.++++...++.|++||.+ ++.... +.....-.+|...+..+++ .++++++++...
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~---------------~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQ---------------FGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SCEEEE---------------ECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred EEECCCCCEEEEECCCCEEEEECCC-CcEEEE---------------ecccCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 4467888888888889999999987 554310 0000011235567899999 577777776643
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 161 (492)
++.|++|+ .+++.+..+...+...+.++++.| +++++++...++.|.+|+.. +..........+...+..++++|+
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC
Confidence 78999999 567766666444556789999999 89888887788999999964 343333212234457899999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC-eEEEEecccccccC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRLYDIRKYKWDG 240 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~i~d~~~~~~~~ 240 (492)
+ +++++...++.|++||.. ++.+..+.... ....+..++++|+ ++++++...++ .|.+|+... +...
T Consensus 175 g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g--------~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~g-~~~~ 242 (286)
T 1q7f_A 175 Q-EIFISDNRAHCVKVFNYE-GQYLRQIGGEG--------ITNYPIGVGINSN-GEILIADNHNNFNLTIFTQDG-QLIS 242 (286)
T ss_dssp S-EEEEEEGGGTEEEEEETT-CCEEEEESCTT--------TSCSEEEEEECTT-CCEEEEECSSSCEEEEECTTS-CEEE
T ss_pred C-CEEEEECCCCEEEEEcCC-CCEEEEEccCC--------ccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCCC-CEEE
Confidence 8 577777788999999974 44433332110 1135788999998 67888777775 999999643 2211
Q ss_pred CCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCC
Q 011160 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
... .......+.+++++|+|+++++..++.|++|+...
T Consensus 243 ~~~-------------~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 243 ALE-------------SKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEE-------------ESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred EEc-------------ccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 100 01112347789999999988886677899999765
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=7.6e-16 Score=146.93 Aligned_cols=283 Identities=12% Similarity=0.104 Sum_probs=196.9
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecc--cCCeeeeEEeec
Q 011160 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL--ERGGVETKLLGK 148 (492)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~ 148 (492)
|.+.++++...++.|.++|..+++.+..+.. ...+..+.|+| +++++++++.++.|.+||+. +.+.+.. +..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~--i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAE--IKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEE--EEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEE--Eec
Confidence 4456778888899999999999998888743 33567999999 99999999999999999995 5554443 332
Q ss_pred CCCceEEEEEc----CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCC--CCCcceeecceEEEEEcCCCCceEEEe
Q 011160 149 HQGRAHKLAIE----PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID--DRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 149 ~~~~v~~i~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
......++|+ |+|..++++...++.|.++|..+.+.+..+...... ....| ....+..+..++++..+++..
T Consensus 239 -G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~-p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 -GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-PEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE-SCCCEEEEEECSSSSEEEEEE
T ss_pred -CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc-CCCceEEEEEcCCCCEEEEEe
Confidence 2346789999 699656566666799999999999888776543210 00000 122577888898867777777
Q ss_pred cCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCC
Q 011160 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 223 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~ 300 (492)
...|.|.++|....+.... ..+ ........+.|+|++++++++. +++|.++|..+++
T Consensus 317 ~~~g~v~~vd~~~~~~~~v------------~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k------- 375 (567)
T 1qks_A 317 KETGKILLVDYTDLNNLKT------------TEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK------- 375 (567)
T ss_dssp TTTTEEEEEETTCSSEEEE------------EEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-------
T ss_pred cCCCeEEEEecCCCcccee------------eee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-------
Confidence 8889999999876421100 000 0123466789999999887665 5689999998742
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceee-----ccccceeeeeEEeecCCCcEE-EEee-ccCeEEEEecC
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-----GHRNCVTVKGVNFFGPKCEYV-VSGS-DCGRIFIWKKK 373 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~s~~g~~l-~sg~-~dg~i~iwd~~ 373 (492)
....+. .|.. ....|++|++..+ +++. .++.|.+++..
T Consensus 376 -------------------------------l~~~i~vgg~~Phpg----~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 376 -------------------------------LVAIEDTGGQTPHPG----RGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp -------------------------------EEEEEECSSSSBCCT----TCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred -------------------------------EEEEEeccCcCCCCc----cceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 112221 1221 2333448875544 4443 46899999998
Q ss_pred C-------CeeeEEEecCCceeEEEeecCCCCeEEEeeC-------CCCEEEeccCCC
Q 011160 374 G-------GELIRVIEADRHVVNCIEPHPHSTVLASSGI-------ESDIKILTPNAA 417 (492)
Q Consensus 374 ~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------dg~i~iw~~~~~ 417 (492)
+ .+.++++......-..+..+|++++|..... ..+|.++|+.+.
T Consensus 421 ~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 7 6788888765444455778999998887552 359999999876
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=1.1e-16 Score=159.20 Aligned_cols=252 Identities=8% Similarity=-0.026 Sum_probs=159.4
Q ss_pred CccceEEEEEEcCCCCEEE-----EecCCCeEEEEECCCCcee-eeeccCcCcceEEEEecCCCCCceEEeecCCCc---
Q 011160 59 KHRGCVNTVSFNTDGDILI-----SGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ--- 129 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~-----s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--- 129 (492)
+|...+..++|||||++|| .|+.+..|++||+.+++.+ ...... .....++|+| +++.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wsp--Dg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTP--DSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEec--CCCEEEEEEecCCCCC
Confidence 5667899999999999999 5566689999999998864 221111 1126899999 9999999887765
Q ss_pred ----------EEEEecccCCee--eeEEeecCCCceEEEEEcCCCCcEEEEEcCCC----cEEEEeCCCCCccceeecCC
Q 011160 130 ----------VRHAQILERGGV--ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRP 193 (492)
Q Consensus 130 ----------v~iw~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~ 193 (492)
|++|++.++... .......+...+..+.|+|+|.. |+.++.++ .|++|+..++.......
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~l~~~~~~~~~~~~l~~--- 269 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY-LFVYILRGWSENDVYWKRPGEKDFRLLVK--- 269 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC-EEEEEEETTTEEEEEEECTTCSSCEEEEE---
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE-EEEEEeCCCCceEEEEEcCCCCceEEeec---
Confidence 999999877532 22223345567889999999964 55554444 56666654443322221
Q ss_pred CCCCCcceeecceEEEEEcCCCCceEEEec---CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc
Q 011160 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (492)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 270 (492)
+...+....+ +++. +++.+. .++.|.+||+.+++.
T Consensus 270 --------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-------------------------------- 307 (695)
T 2bkl_A 270 --------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-------------------------------- 307 (695)
T ss_dssp --------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG--------------------------------
T ss_pred --------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc--------------------------------
Confidence 1112233334 3433 333333 235555565543210
Q ss_pred CCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEe
Q 011160 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (492)
Q Consensus 271 ~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 350 (492)
.....+..+.....+..+++
T Consensus 308 ------------------------------------------------------------~~~~~l~~~~~~~~l~~~~~ 327 (695)
T 2bkl_A 308 ------------------------------------------------------------ASWKEIVPEDSSASLLSVSI 327 (695)
T ss_dssp ------------------------------------------------------------GGCEEEECCCSSCEEEEEEE
T ss_pred ------------------------------------------------------------cCCeEEecCCCCCeEEEEEE
Confidence 00111111211112566777
Q ss_pred ecCCCcEEEEeeccCeEEEEecC-CCeeeEEEecC-CceeEEEeecCCCCeEE----EeeCCCCEEEeccCCCCCCcc
Q 011160 351 FGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEAD-RHVVNCIEPHPHSTVLA----SSGIESDIKILTPNAADRATL 422 (492)
Q Consensus 351 ~s~~g~~l~sg~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~~~~~ 422 (492)
+ ++.++++...|+..+||.+. +++....+..+ .+.|..++++|+++.|+ +....++|++||+.+++...+
T Consensus 328 -~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 328 -V-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp -E-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred -E-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 5 67888899999988888664 46666667655 67788999999998766 333457899999988765433
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=4.5e-16 Score=139.93 Aligned_cols=244 Identities=12% Similarity=0.031 Sum_probs=168.9
Q ss_pred CCCCCCCceEeeccCc------------------------ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-
Q 011160 4 ASNNNNNKRARTSVDK------------------------ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD- 58 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~d------------------------g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 58 (492)
+.++++|+++++...+ +.|.+||..+|++. ..+.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------------------~~~~~ 87 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL---------------------QSSGK 87 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE---------------------EEECT
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE---------------------eccCC
Confidence 5578899999888877 47889998877765 2222
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeec--------cCcCcceEEEEecCCCCCceEEeec-CCC
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSFH--------SGHNDNVFQAKIMPFTDDRSIVTCA-ADG 128 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~~~~-~dg 128 (492)
++-.....++++|+|+++++...++.|++|+..... .+..+- .++......++++|. ++.++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCC
Confidence 445678899999999999999989999999976442 344441 234457889999981 355556654 589
Q ss_pred cEEEEecccCCeeeeEEee--------cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcc
Q 011160 129 QVRHAQILERGGVETKLLG--------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (492)
.|++|+. .+......... ++-.....|+++|++..++++...++.|++|+..+++.+..+....
T Consensus 167 ~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~------- 238 (329)
T 3fvz_A 167 RIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS------- 238 (329)
T ss_dssp EEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-------
T ss_pred eEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-------
Confidence 9999994 44444331111 1223478999999844788888889999999999888776664321
Q ss_pred eeecceEEEEEcC------CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC
Q 011160 201 MTVVNLNAIAIDP------RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (492)
Q Consensus 201 ~~~~~v~~~~~~p------~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (492)
....+..++|+| + +..+++...+..|++|++.+++....... ...+...+..++++|+|.
T Consensus 239 -~~~~~~~~~~~pg~~~~~~-g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 239 -FGRNVFAISYIPGFLFAVN-GKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------VRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp -TTTCEEEEEEETTEEEEEE-CCCCTTCSCCCCEEEEETTTCCEEEEECC------------SSSCCSSEEEEEECTTSE
T ss_pred -cCCCcceeeecCCEEEEeC-CCEEeccCCCcEEEEEEcCCCeEEEEEcC------------CCCccCCeeEEEECCCCC
Confidence 223567888988 2 22222333455899999988765432110 123445688999999997
Q ss_pred eeEeec-CCcEEEEecCC
Q 011160 275 LLVSYN-DEFIYLFTQDM 291 (492)
Q Consensus 275 ~l~~~~-~~~i~~~d~~~ 291 (492)
++++.. ++.|++|++..
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 777666 56899999875
No 185
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.75 E-value=5.8e-15 Score=134.12 Aligned_cols=292 Identities=12% Similarity=0.020 Sum_probs=187.3
Q ss_pred CCCCCceEeeccC--cc---eEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec
Q 011160 6 NNNNNKRARTSVD--KA---LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 6 ~~~~~~~l~t~~~--dg---~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (492)
.+|+++++.+... .. +|.++|..+++++ .++.....+ .++++|||++|+.+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~---------------------~~i~~g~~p--~i~~spDg~~lyv~n 84 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL---------------------GHVNGGFLP--NPVAAHSGSEFALAS 84 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE---------------------EEecCCCCC--CeEECCCCCEEEEEe
Confidence 3577777666543 33 8899999988766 344433344 899999999998875
Q ss_pred ----------CCCeEEEEECCCCceeeeeccC------cCcceEEEEecCCCCCceEEeecC--CCcEEEEecccCCeee
Q 011160 81 ----------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVE 142 (492)
Q Consensus 81 ----------~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~ 142 (492)
.++.|.+||..+.+.+..+..+ +......++|+| +|++|+++.. ++.|.++| .+++.+.
T Consensus 85 ~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred ccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 3678999999988877666322 012345899999 9999998874 57899999 8776544
Q ss_pred e-EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecc-eEEEEEcCCCCceEE
Q 011160 143 T-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN-LNAIAIDPRNANLFA 220 (492)
Q Consensus 143 ~-~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~ 220 (492)
. .... .++.+.|+++..+++.+.||.+.+++. +++........... . ...+ .....+.++++.+++
T Consensus 162 ~~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~----~~~p~~~~~~~~~~~~~~~~ 229 (373)
T 2mad_H 162 QLLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-T----AAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred EEcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-c----CCcceeecceeEecCCEEEE
Confidence 3 2221 235566777677888889999999999 77665332210000 0 1111 123455666444444
Q ss_pred EecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCC
Q 011160 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 221 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~ 300 (492)
. +..+.+.+.|+...... + +.-|++.+..
T Consensus 230 ~-~~~~~v~vid~~~~~~~------------------------v-------------------~~~~~~~~~~------- 258 (373)
T 2mad_H 230 P-VYSGKILQADISAAGAT------------------------N-------------------KAPIDALSGG------- 258 (373)
T ss_pred E-cCCceEEEEeccCCcce------------------------E-------------------eeeeeecCCc-------
Confidence 4 36778888888653210 0 0001111000
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec----------cCeEEEE
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD----------CGRIFIW 370 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~----------dg~i~iw 370 (492)
.....+. ... ...+.+ +|+++.++++.. .+.|.++
T Consensus 259 ------------------------------~~~~~~~--p~g--~~~~~~-s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 259 ------------------------------RKADTWR--PGG--WQQVAY-LKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred ------------------------------cccccee--cCc--eEeEEE-CCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 0000000 000 223455 888887776543 3589999
Q ss_pred ecCCCeeeEEEecCCceeEEEeecCCCC-eEEEee-CCCCEEEeccCCCCCCcc
Q 011160 371 KKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRATL 422 (492)
Q Consensus 371 d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~ 422 (492)
|+.+++.+..+... .....++|+|||+ .++++. .++.|.+||+.+++....
T Consensus 304 D~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 304 TGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99999999988643 3589999999999 777776 489999999999876543
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.75 E-value=1.5e-15 Score=135.58 Aligned_cols=304 Identities=13% Similarity=0.096 Sum_probs=195.5
Q ss_pred CCCCCCceEeeccC-----cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEe
Q 011160 5 SNNNNNKRARTSVD-----KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (492)
Q Consensus 5 ~~~~~~~~l~t~~~-----dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 79 (492)
..+|+++++.+... ++.|.+.|..+++++ .++..-..+ . ++++|||++|+++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~---------------------~~I~vG~~P-~-va~spDG~~lyVa 95 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI---------------------GMIDGGFLP-N-PVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE---------------------EEEEECSSC-E-EEECTTSSCEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE---------------------EEEECCCCC-c-EEECCCCCEEEEE
Confidence 35688888766654 689999999988877 344433344 4 9999999988776
Q ss_pred c----------CCCeEEEEECCCCceeeeeccCc------CcceEEEEecCCCCCceEEeecC--CCcEEEEecccCCee
Q 011160 80 S----------DDRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGV 141 (492)
Q Consensus 80 ~----------~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~ 141 (492)
. .++.|.+||..+.+.+..+..+. ......++|+| +|++++++.. ++.|.++|+.+.+.+
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 5 35789999999999887774322 12456799999 9999988764 689999999998776
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecce-EEEEEc-CCCCce
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNL-NAIAID-PRNANL 218 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-p~~~~~ 218 (492)
....+.+ |..+.|.+.+.+++.+.||.+.+.++.+ ++...... ..... ....+ ....|. ++ +++
T Consensus 174 ~tI~v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~--~~~~~----~~~~~~~~~~~~~~d-G~~ 240 (386)
T 3sjl_D 174 RMLDVPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT--EVFHP----EDEFLINHPAYSQKA-GRL 240 (386)
T ss_dssp EEEECCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC--CCCSC----TTSCBCSCCEEETTT-TEE
T ss_pred EEEECCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec--ceecc----ccccccccceeEcCC-CcE
Confidence 6543322 1223355556777888899999999876 55422111 11000 00111 123554 44 544
Q ss_pred EEEecCCCeEEEEecccccc--cCCCCCCCCccccCCCCc-CCCcccceEEEEEcCCCCeeEeecC-----------CcE
Q 011160 219 FAVAGSDEYTRLYDIRKYKW--DGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYND-----------EFI 284 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~-----------~~i 284 (492)
++ .+.+|.|++.|+..... .....+ +..... ..-.......++++++++.|+.... +.|
T Consensus 241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~------~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V 313 (386)
T 3sjl_D 241 VW-PTYTGKIHQIDLSSGDAKFLPAVEA------LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 313 (386)
T ss_dssp EE-EBTTSEEEEEECTTSSCEECCCEES------SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred EE-EeCCCEEEEEECCCCcceeecceec------cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence 44 55689999999976531 111100 000000 0011223345777898887776531 358
Q ss_pred EEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEe-e
Q 011160 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSG-S 362 (492)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg-~ 362 (492)
.++|+.+. +.++.+.... .+.++.+ ++|++ +|++. .
T Consensus 314 ~viD~~t~--------------------------------------kv~~~i~vg~---~~~~lav-s~D~~~~ly~tn~ 351 (386)
T 3sjl_D 314 VVLDAKTG--------------------------------------ERLAKFEMGH---EIDSINV-SQDEKPLLYALST 351 (386)
T ss_dssp EEEETTTC--------------------------------------CEEEEEEEEE---EECEEEE-CSSSSCEEEEEET
T ss_pred EEEECCCC--------------------------------------eEEEEEECCC---CcceEEE-CCCCCeEEEEEcC
Confidence 89998874 3334433222 2678998 99997 66654 4
Q ss_pred ccCeEEEEecCCCeeeEEEecCCceeEEEeecCC
Q 011160 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396 (492)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 396 (492)
.++.|.++|..+++.+.++..- +..+.|.+++|
T Consensus 352 ~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 352 GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 5899999999999999998743 33566777766
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=5.5e-16 Score=140.88 Aligned_cols=260 Identities=10% Similarity=0.067 Sum_probs=162.8
Q ss_pred CCceEeec---------cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEe
Q 011160 9 NNKRARTS---------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (492)
Q Consensus 9 ~~~~l~t~---------~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 79 (492)
+|++++.. ..++.|.+|++.+++.. .+ ..+..++|+|||++|+.+
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------------------~l----~~~~~~~~SpDg~~la~~ 76 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----------------------FI----ENATMPRISPDGKKIAFM 76 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----------------------EE----ESCEEEEECTTSSEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----------------------Ec----ccCCCeEECCCCCEEEEE
Confidence 67776653 23677889998876533 22 457889999999999987
Q ss_pred cCC---C--eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC---------------------------
Q 011160 80 SDD---R--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------------------------- 127 (492)
Q Consensus 80 ~~d---~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------------------------- 127 (492)
+.+ + .|.+|++.+++..... . +.. +..++|+| +++.|+.++.+
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 77 RANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNE--DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECT--TSSEEEEEEECCCC---------CCCC---------CE
T ss_pred EeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECC--CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 653 2 4888898887764433 2 333 99999999 99988877632
Q ss_pred CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCC-------cEEEEeCCCCCccceeecCCCCCCCcc
Q 011160 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-------LVQHFDLRTGAATELFTCRPIDDRRNY 200 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (492)
..|.+|++.+++.+.. +.. . .+..++|+|++ +++++..++ ...+|.+.+++.. .+..
T Consensus 152 ~~l~~~d~~~~~~~~~--l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~--------- 215 (347)
T 2gop_A 152 TTFWIFDTESEEVIEE--FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFE--------- 215 (347)
T ss_dssp EEEEEEETTTTEEEEE--EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEE---------
T ss_pred ceEEEEECCCCeEEee--ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE-Eecc---------
Confidence 5788999877665232 332 3 78899999998 566665432 3445544444332 2221
Q ss_pred eeecceEEEEEcCCCCceEEEecCC--------CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEE-EEEcC
Q 011160 201 MTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG-LAFSD 271 (492)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~ 271 (492)
+ ..+..+ +|+ ++.|+.++.+ ..|.+|| +++. ..+...+...+.. +.|+
T Consensus 216 -~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~---------------~~l~~~~~~~~~~~~~~s- 272 (347)
T 2gop_A 216 -K-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIYD--GKEV---------------MGILDEVDRGVGQAKIKD- 272 (347)
T ss_dssp -E-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEEC--SSCE---------------EESSTTCCSEEEEEEEET-
T ss_pred -C-cceeeE--CCC-CCEEEEEEccccCCccccceEEEEC--CCce---------------EeccccCCcccCCccEEc-
Confidence 2 233333 888 5666655533 4688888 3321 1122334556775 8999
Q ss_pred CCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEe
Q 011160 272 QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (492)
Q Consensus 272 ~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 350 (492)
++ ++++++ ++.+++| +.++ .. ..+..+.. .|.++.+
T Consensus 273 dg-~~~~~~~~~~~~l~-~~~g--------------------------------------~~-~~~~~~~~--~v~~~~~ 309 (347)
T 2gop_A 273 GK-VYFTLFEEGSVNLY-IWDG--------------------------------------EI-KPIAKGRH--WIMGFDV 309 (347)
T ss_dssp TE-EEEEEEETTEEEEE-EESS--------------------------------------SE-EEEECSSS--EEEEEEE
T ss_pred Cc-EEEEEecCCcEEEE-EcCC--------------------------------------ce-EEEecCCC--eEEeeee
Confidence 88 777766 6688898 7632 11 22223333 3788888
Q ss_pred ecCCCcEEEEeeccCeE-EEEecCCCeeeEEEecCCc
Q 011160 351 FGPKCEYVVSGSDCGRI-FIWKKKGGELIRVIEADRH 386 (492)
Q Consensus 351 ~s~~g~~l~sg~~dg~i-~iwd~~~~~~~~~~~~h~~ 386 (492)
+| .++++++.++.. .||.+. ++ ...+..|..
T Consensus 310 -s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 310 -DE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp -SS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred -eC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 88 677777766654 677665 54 444555543
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.74 E-value=1e-15 Score=133.10 Aligned_cols=224 Identities=8% Similarity=0.067 Sum_probs=164.5
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCcc-ceEEEEEEcCCCCEEEEecCCCeEE
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDDRRVI 86 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (492)
..+++|++++.++.|.+||.++|+++ .++..+. ..+.+++++|+|++|++ .++.|.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~---------------------w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~ 59 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIV---------------------WEYPLEKGWECNSVAATKAGEILFS--YSKGAK 59 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEE---------------------EEEECCTTCCCCEEEECTTSCEEEE--CBSEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEE---------------------EEeCCCccCCCcCeEECCCCCEEEe--CCCCEE
Confidence 34688999999999999999999987 4555554 46889999999999884 467899
Q ss_pred EEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC-CCcEEEEecccCCeeeeEEee----cCCCceEEEEEcCC
Q 011160 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLG----KHQGRAHKLAIEPG 161 (492)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~----~~~~~v~~i~~~~~ 161 (492)
.||. +++.+..+..+....+.++.+.| +++.+++.+. ++.|..++. +++.+....+. .+......+++.++
T Consensus 60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 60 MITR-DGRELWNIAAPAGCEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp EECT-TSCEEEEEECCTTCEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred EECC-CCCEEEEEcCCCCccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC
Confidence 9998 79888888433345788999999 9999998877 777777775 55554443322 12224556778899
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCC
Q 011160 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 241 (492)
+ .++++...++.|..||.+ ++.+..+... ..+.++.+.++ +++++++..++.|..+|..+++....
T Consensus 136 G-~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-----------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 136 G-NYLVPLFATSEVREIAPN-GQLLNSVKLS-----------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp S-CEEEEETTTTEEEEECTT-SCEEEEEECS-----------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred C-CEEEEecCCCEEEEECCC-CCEEEEEECC-----------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 8 588999999999999998 8888777642 13455677786 67888888888999999998876443
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (492)
..-. .........+..++..++|.++++...
T Consensus 202 ~~~~---------~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 202 VNAN---------DIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp EEGG---------GSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred ecCC---------CCCCccccccccceEcCCCCEEEEecc
Confidence 2100 000111234788899999998888753
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=9.7e-16 Score=137.51 Aligned_cols=268 Identities=10% Similarity=0.018 Sum_probs=180.2
Q ss_pred cCCCeEEEEECCCCceeeeecc-----CcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceE
Q 011160 80 SDDRRVILWDWKTERVKLSFHS-----GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (492)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~ 154 (492)
+.++.|.+||.++++....+.. ........+.+. ++..+++...++.|.+||..+++.+.. +. ......
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~--i~-~~~~p~ 87 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGR--IT-GFTSPR 87 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CCSSEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEE--cC-CCCCCc
Confidence 3478999999999887655421 122346778774 466666777789999999998877655 33 346788
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-CCCeEEEEec
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDI 233 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~i~d~ 233 (492)
.+++++++ +++++...++.|.+||+.+++....+....... .......+++ +++.++++.. .++.|.++|+
T Consensus 88 ~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~-----~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 88 YIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM-----ESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp EEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT-----TTCBCCCEEE--ETTEEEEEECTTCCEEEEEET
T ss_pred EEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc-----cCCCcceEEE--ECCEEEEEcCCCCCEEEEEEC
Confidence 99998888 565555578999999999988776655322100 0012345666 2355555544 4889999999
Q ss_pred ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC-----------CcEEEEecCCCCCCCCCCCCC
Q 011160 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----------EFIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------~~i~~~d~~~~~~~~~~~~~~ 302 (492)
.+++....... ......++++|+|++++++.. +.|.++|..++
T Consensus 160 ~t~~~~~~i~~----------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------- 213 (328)
T 3dsm_A 160 ETDKVVDELTI----------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------- 213 (328)
T ss_dssp TTTEEEEEEEC----------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----------
T ss_pred CCCeEEEEEEc----------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC----------
Confidence 98775433211 123456889999998777663 47999998763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeE--E
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR--V 380 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~--~ 380 (492)
.....+...... ....+++ +|++++|+++.. .|.+||..+++... .
T Consensus 214 ----------------------------~v~~~~~~~~g~-~p~~la~-~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~ 261 (328)
T 3dsm_A 214 ----------------------------TVEKQFKFKLGD-WPSEVQL-NGTRDTLYWINN--DIWRMPVEADRVPVRPF 261 (328)
T ss_dssp ----------------------------EEEEEEECCTTC-CCEEEEE-CTTSCEEEEESS--SEEEEETTCSSCCSSCS
T ss_pred ----------------------------eEEEEEecCCCC-CceeEEE-ecCCCEEEEEcc--EEEEEECCCCceeeeee
Confidence 222222211111 2578888 999998887654 89999998887642 1
Q ss_pred EecCCceeEEEeecC-CCCeEEEe----eCCCCEEEeccCCCCCC
Q 011160 381 IEADRHVVNCIEPHP-HSTVLASS----GIESDIKILTPNAADRA 420 (492)
Q Consensus 381 ~~~h~~~v~~~~~s~-~~~~l~s~----~~dg~i~iw~~~~~~~~ 420 (492)
+..+...+..++++| ++.++++. ..++.|.+|+.. ++..
T Consensus 262 ~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 262 LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 222245689999999 55555665 568899999998 5443
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=4.9e-15 Score=131.26 Aligned_cols=246 Identities=10% Similarity=0.077 Sum_probs=153.5
Q ss_pred eecCccceEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 56 KLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
.+..+.....+++|+|+++ +++++..++.|..|+..++ ...+ ..+...+.+++++| ++.++++...++.|.+|+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~--dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNK--QGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECT--TCCEEEEETTTTEEEEEC
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECC--CCcEEEEecCCCeEEEEc
Confidence 3444556678999999998 7888888999999999877 3444 45667899999999 999888777778999999
Q ss_pred cccCCeeeeEEe-e-cCCCceEEEEEcCCCCcEEEEE----cC-------------CCcEEEEeCCCCCccceeecCCCC
Q 011160 135 ILERGGVETKLL-G-KHQGRAHKLAIEPGSPHVFYTC----GE-------------DGLVQHFDLRTGAATELFTCRPID 195 (492)
Q Consensus 135 ~~~~~~~~~~~~-~-~~~~~v~~i~~~~~~~~~l~~~----~~-------------dg~i~iwd~~~~~~~~~~~~~~~~ 195 (492)
..+++....... . .....+..+++.|+| +++++. +. .+.|..++.. ++......
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~----- 169 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR----- 169 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-----
Confidence 877654322111 1 112356789999998 566653 21 2234444333 22111110
Q ss_pred CCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC
Q 011160 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (492)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 274 (492)
.......++|+|+ ++.+++.+.++.|++|++.. ++ +.
T Consensus 170 ------~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~--------------------------~~--------- 207 (296)
T 3e5z_A 170 ------DRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGE--------------------------TE--------- 207 (296)
T ss_dssp ------CCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSC--------------------------EE---------
T ss_pred ------CCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCc--------------------------Cc---------
Confidence 1112345555555 33334444455555555431 10 00
Q ss_pred eeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC
Q 011160 275 LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (492)
Q Consensus 275 ~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 354 (492)
.....+..+.. .+.++++ +++
T Consensus 208 --------------------------------------------------------~~~~~~~~~~~--~p~~i~~-d~~ 228 (296)
T 3e5z_A 208 --------------------------------------------------------YQGVHFTVEPG--KTDGLRV-DAG 228 (296)
T ss_dssp --------------------------------------------------------EEEEEECCSSS--CCCSEEE-BTT
T ss_pred --------------------------------------------------------CCCeEeeCCCC--CCCeEEE-CCC
Confidence 00000100111 1457787 999
Q ss_pred CcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEee-cCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 355 CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP-HPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 355 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
|+++++. ++.|.+|+.. ++.+..+..+.. +++++| +|+++.|+.++.+ .+..+++.+.++
T Consensus 229 G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 229 GLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp SCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred CCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 9877766 7899999985 888888887777 999999 6899988888765 344445555433
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.71 E-value=6.7e-15 Score=131.50 Aligned_cols=286 Identities=12% Similarity=0.037 Sum_probs=189.7
Q ss_pred EEEcCCCCEEEEecC-----CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec----------CCCcEE
Q 011160 67 VSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVR 131 (492)
Q Consensus 67 ~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~v~ 131 (492)
....|+++.++.... ++.|.+.|..+++.+.++..+.. + . ++++| ++++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~sp--DG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVAD--DGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECT--TSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECC--CCCEEEEEcccccccccCCCCCEEE
Confidence 345688988877755 57999999999999888854433 3 4 99999 999998775 357899
Q ss_pred EEecccCCeeeeEEeec-----CCCceEEEEEcCCCCcEEEEEc--CCCcEEEEeCCCCCccceeecCCCCCCCcceeec
Q 011160 132 HAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (492)
Q Consensus 132 iw~~~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
+||..+.+.+....+.. .......++|+|+|. .++++. .++.|.++|+.+++.+..+....
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----------- 180 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----------- 180 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----------
Confidence 99999988766543322 112456799999995 555554 36899999999999887775321
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccce-EEEEEc-CCCCeeEeecC
Q 011160 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAFS-DQSELLVSYND 281 (492)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s-~~~~~l~~~~~ 281 (492)
+....|.+...+++.+.||.+.+.++.. ++..... . .........+ ....|. ++|++++...+
T Consensus 181 ---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~----------~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~ 246 (386)
T 3sjl_D 181 ---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH----------T-EVFHPEDEFLINHPAYSQKAGRLVWPTYT 246 (386)
T ss_dssp ---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE----------C-CCCSCTTSCBCSCCEEETTTTEEEEEBTT
T ss_pred ---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee----------c-ceeccccccccccceeEcCCCcEEEEeCC
Confidence 1112243455677778888888888875 4321100 0 0000001111 123554 68877777778
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceee--------ccccceeeeeEEeecC
Q 011160 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--------GHRNCVTVKGVNFFGP 353 (492)
Q Consensus 282 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~s~ 353 (492)
+.+++.|..+.... ....+. ..-.+.....+.+ ++
T Consensus 247 g~V~v~d~~~~~~~------------------------------------v~~~~~~~~~~~~~~g~~p~g~q~~a~-~~ 289 (386)
T 3sjl_D 247 GKIHQIDLSSGDAK------------------------------------FLPAVEALTEAERADGWRPGGWQQVAY-HR 289 (386)
T ss_dssp SEEEEEECTTSSCE------------------------------------ECCCEESSCHHHHHTTEEECSSSCEEE-ET
T ss_pred CEEEEEECCCCcce------------------------------------eecceeccccccccccccCCCcceeeE-CC
Confidence 89999998754210 011110 0000001334666 88
Q ss_pred CCcEEEEeec----------cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCC-eEEEe-eCCCCEEEeccCCCCCCc
Q 011160 354 KCEYVVSGSD----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRAT 421 (492)
Q Consensus 354 ~g~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~~~ 421 (492)
+++.++.... .+.|.+.|+.+++.+..+..- ..+.+|++++|++ +|+++ ..++.|.++|..+++...
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9888877643 257999999999999888643 3688999999997 56654 458999999999887654
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.70 E-value=3.2e-13 Score=119.78 Aligned_cols=281 Identities=9% Similarity=0.008 Sum_probs=188.9
Q ss_pred CccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 138 (492)
.....+.++++.++|++.++...++.|.+|+.. ++........+...+.++++.+ ++.++++...++.|..|+.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-C
Confidence 345678899999999988888778999999987 5543322233446789999998 88877777777889999976 4
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
.. ...........+.++++.+++ .++++...++.|..++.. ++.. .+.... ....+..++++++ +++
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~--------~~~~~~~i~~d~~-g~l 159 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-EYDLPN--------KGSYPAFITLGSD-NAL 159 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-EEECSS--------TTCCEEEEEECTT-SSE
T ss_pred Ce-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-EccCCC--------CCCCceeEEECCC-CCE
Confidence 43 222233344678999999988 576776667899999987 5433 222110 1225788999997 566
Q ss_pred EEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCC
Q 011160 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP 297 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~ 297 (492)
+++...++.|..|+. +++.... ........+..++++++|.++++.. .+.|.+|+.... .
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~~~--------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~--- 220 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLEEY--------------PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-I--- 220 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEEE--------------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-E---
T ss_pred EEEecCCCeEEEECC-CCcEEEe--------------eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-E---
Confidence 666666788999998 4332110 0111234678999999998777665 457999987321 0
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCee
Q 011160 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (492)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~ 377 (492)
....+..+.. .+.++++ +++|++.++...++.|..|+. +++.
T Consensus 221 ----------------------------------~~~~~~~~~~--~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 221 ----------------------------------SEYDIPTPNA--RPHAITA-GKNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp ----------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred ----------------------------------EEEECCCCCC--CceEEEE-CCCCCEEEeccCCCeEEEECC-CCcE
Confidence 0000111112 2678888 999997777767799999998 5544
Q ss_pred eE-EEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 378 IR-VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 378 ~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
.. .+......+.++++.++|+++++.. . .|..+++.
T Consensus 263 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 263 QEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 32 2333445689999999998777665 4 66666653
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=8.7e-15 Score=127.80 Aligned_cols=242 Identities=9% Similarity=0.012 Sum_probs=162.4
Q ss_pred ceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC
Q 011160 106 NVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 106 ~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (492)
...++++.+ ++.+++ +...++.|.+|+..+...... ...+...+.++++.+++ .++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSSSCEEEEECC-----EEC--CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECC--CCCEEEEccCCCCcEEEecCCCcccceE--eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence 678899999 888766 546788999998755432211 12333567899999998 4656555 8899999987654
Q ss_pred ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccce
Q 011160 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (492)
.. .+... ....+..++++|+ +.++++...++.|.+|+..+..... ........+
T Consensus 99 ~~-~~~~~---------~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~p 152 (270)
T 1rwi_B 99 QT-VLPFD---------GLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTV---------------LPFTGLNDP 152 (270)
T ss_dssp CE-ECCCC---------SCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCEE---------------CCCCSCCSC
T ss_pred Ee-eeecC---------CcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeEe---------------eccccCCCc
Confidence 32 11110 1235789999997 6777777778899999765432110 011112356
Q ss_pred EEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccce
Q 011160 265 TGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (492)
Q Consensus 265 ~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (492)
.+++++++|+++++.. ++.|.+|+....... .....+..
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~--------------------------------------~~~~~~~~-- 192 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV--------------------------------------VLPFTDIT-- 192 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTCCEE--------------------------------------ECCCSSCC--
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCCceE--------------------------------------eecccCCC--
Confidence 7899999998777665 568999997653110 00011111
Q ss_pred eeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 344 ~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
.+.++++ +++|.++++...++.|.+|+............+...+.+++++++|+++++...++.|+++++...+..
T Consensus 193 ~p~~i~~-d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 193 APWGIAV-DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp SEEEEEE-CTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred CceEEEE-CCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 2678888 999988888777899999998665443322233356899999999998888888999999999876543
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=2.3e-14 Score=125.05 Aligned_cols=240 Identities=10% Similarity=0.017 Sum_probs=160.8
Q ss_pred eEEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee
Q 011160 63 CVNTVSFNTDGDILI-SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 141 (492)
...+++++++|++++ +.+.++.|.+|+..+.... .+...+...+.++++.+ ++.++++.. ++.|.+|+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECT--TCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECC--CCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 5577889999997655432 22123445688999999 888666655 889999998654332
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (492)
.. .......+..+++.+++ +++++...++.|.+|+..+......... ....+..++++|+ ++++++
T Consensus 101 ~~--~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~p~~i~~~~~-g~l~v~ 166 (270)
T 1rwi_B 101 VL--PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFT----------GLNDPDGVAVDNS-GNVYVT 166 (270)
T ss_dssp EC--CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCC----------SCCSCCCEEECTT-CCEEEE
T ss_pred ee--ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccc----------cCCCceeEEEeCC-CCEEEE
Confidence 11 11233578999999998 5777777788999997655433211100 1124678999997 567777
Q ss_pred ecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCC
Q 011160 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (492)
Q Consensus 222 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~ 300 (492)
...++.|.+|+......... .......+.+++++++|.++++.. ++.|.+|+......
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~---------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~------ 225 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQVVL---------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS------ 225 (270)
T ss_dssp EGGGTEEEEECTTTCCEEEC---------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC------
T ss_pred ECCCCEEEEEecCCCceEee---------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc------
Confidence 77788999999876532110 011125678999999997766665 56899999765311
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
......+.. .+.++++ +++|+++++...++.|+++++...+
T Consensus 226 --------------------------------~~~~~~~~~--~p~~i~~-~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 226 --------------------------------TVLPFTGLN--TPLAVAV-DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp --------------------------------EECCCCSCS--CEEEEEE-CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred --------------------------------eeeccCCCC--CceeEEE-CCCCCEEEEECCCCEEEEEcCCCcc
Confidence 000011111 2678888 9999988998999999999986654
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=2.6e-13 Score=120.29 Aligned_cols=233 Identities=10% Similarity=0.068 Sum_probs=161.8
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+...++++++++...++.|.+||.. ++... ..+..+...+.+++++++|.++++...++
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~--------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITE--------------------YPLPTPDAKVMCLTISSDGEVWFTENAAN 78 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEE--------------------EECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEE--------------------ecCCcccCceeeEEECCCCCEEEeCCCCC
Confidence 3456788888877777899999987 55431 11223456789999999999888877788
Q ss_pred eEEEEECCCCceeeee-ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCC
Q 011160 84 RVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 162 (492)
.|..|+.. +.. ..+ .......+.++++.| ++.++++...++.|.+|+. ++... ......+...+..+++.+++
T Consensus 79 ~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 79 KIGRITKK-GII-KEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDN 152 (299)
T ss_dssp EEEEECTT-SCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTS
T ss_pred eEEEECCC-CcE-EEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCC
Confidence 99999976 443 222 123455789999998 8888887777889999998 44332 22233345678999999998
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCC
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
.++++...++.|..||. +++... +.... ....+..++++++ +.++++...++.|..|+. +++....
T Consensus 153 -~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~--------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~~- 218 (299)
T 2z2n_A 153 -ALWFTENQNNAIGRITE-SGDITE-FKIPT--------PASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEITEF- 218 (299)
T ss_dssp -CEEEEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEE-
T ss_pred -CEEEEeCCCCEEEEEcC-CCcEEE-eeCCC--------CCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEEEE-
Confidence 57676667789999998 655432 21110 1224778999998 667777667889999998 5442110
Q ss_pred CCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecC
Q 011160 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (492)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (492)
........+.+++++++|+++++.. ++.|..|+..
T Consensus 219 -------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 219 -------------KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -------------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -------------ECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 0112345688999999998777664 5789999973
No 196
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.68 E-value=1.6e-14 Score=131.63 Aligned_cols=292 Identities=15% Similarity=0.111 Sum_probs=186.3
Q ss_pred CCCCceEeeccC-c----ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec-
Q 011160 7 NNNNKRARTSVD-K----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS- 80 (492)
Q Consensus 7 ~~~~~~l~t~~~-d----g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~- 80 (492)
+++++++.+... + +.|.+.|..+++++ .++..-..+ .++++|||++|+++.
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv---------------------~~I~vG~~P--gia~SpDgk~lyVan~ 137 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRIL---------------------GMTDGGFLP--HPVAAEDGSFFAQAST 137 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEE---------------------EEEEECSSC--EEEECTTSSCEEEEEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEE---------------------EEEECCCCC--ceEECCCCCEEEEEec
Confidence 466666554433 3 79999999988877 334322345 799999999888775
Q ss_pred ---------CCCeEEEEECCCCceeeeeccC------cCcceEEEEecCCCCCceEEeecC--CCcEEEEecccCCeeee
Q 011160 81 ---------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET 143 (492)
Q Consensus 81 ---------~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~ 143 (492)
.++.|.++|..+++.+..+..+ .......++|+| ++++|+++.. ++.|.+.|+.+.+.+..
T Consensus 138 ~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 138 VFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence 3678999999999988776322 123456789999 9999998864 57899999998877665
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
..+.+ +....|+++..+++.+.||.+.+.++.+++...... . ...... . .....+.|.+++ ..++..+
T Consensus 216 I~v~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~-~~~v~~--~-p~~~~~~~~~dg-~~~~~~s 283 (426)
T 3c75_H 216 LDVPD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-E-VFHTED--E-LLINHPAFSLRS-GRLVWPT 283 (426)
T ss_dssp EECCS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-C-CCSCTT--S-CBCSCCEECTTT-CEEEEEB
T ss_pred EEcCC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e-eeccCC--C-ceeeEeeecCCC-CEEEEEe
Confidence 33321 134455555667777788888888886555442111 0 000000 0 011235678884 4544556
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCC-cCCCcccceEEEEEcCCCCeeEeec-----------CCcEEEEecCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQDM 291 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~-----------~~~i~~~d~~~ 291 (492)
..+.|.+.|.......... +........ ...........++++|+++.+++.. .+.|.++|..+
T Consensus 284 ~~g~V~ViD~~~~~~~v~~----~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 284 YTGKIFQADLTAEGATFRA----PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp TTSEEEEEEECSSCEEECC----CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred CCCcEEEEeccCCceEEee----eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 6789999998654321100 000000000 0000112222468999988766653 23699999887
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEee-ccCeEEE
Q 011160 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIFI 369 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~-~dg~i~i 369 (492)
. +.+..+..... ..++.| +|||+ ++++.. .++.|.+
T Consensus 360 ~--------------------------------------kvv~~I~vg~~---P~gia~-spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 360 G--------------------------------------ERINKIELGHE---IDSINV-SQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp C--------------------------------------CEEEEEEEEEE---ECEEEE-CCSSSCEEEEEETTTTEEEE
T ss_pred C--------------------------------------eEEEEEECCCC---cCeEEE-ccCCCEEEEEEcCCCCeEEE
Confidence 3 34444443222 578888 99999 888877 5899999
Q ss_pred EecCCCeeeEEE
Q 011160 370 WKKKGGELIRVI 381 (492)
Q Consensus 370 wd~~~~~~~~~~ 381 (492)
+|+.+++.++++
T Consensus 398 ID~~t~kvv~tI 409 (426)
T 3c75_H 398 YDAATGEELRSV 409 (426)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 999999999887
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=7.1e-15 Score=130.22 Aligned_cols=229 Identities=12% Similarity=0.078 Sum_probs=157.6
Q ss_pred CCCCCCCc-eEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 4 ASNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 4 ~~~~~~~~-~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
+.+.|+++ +++++..++.|..|+..++ . ..+..+...+.+++++|+|+++++...+
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~---------------------~~~~~~~~~~~~l~~~~dg~l~v~~~~~ 89 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--L---------------------SPEMHPSHHQNGHCLNKQGHLIACSHGL 89 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC--E---------------------EEEESSCSSEEEEEECTTCCEEEEETTT
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC--e---------------------EEEECCCCCcceeeECCCCcEEEEecCC
Confidence 44667887 7888888999999999865 3 3344567789999999999988888777
Q ss_pred CeEEEEECCCCceeeeec--cC-cCcceEEEEecCCCCCceEEe----ecC-------------CCcEEEEecccCCeee
Q 011160 83 RRVILWDWKTERVKLSFH--SG-HNDNVFQAKIMPFTDDRSIVT----CAA-------------DGQVRHAQILERGGVE 142 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~~----~~~-------------dg~v~iw~~~~~~~~~ 142 (492)
+.|.+||..+++...... .+ ....+..+++.| +|+++++ +.. .+.|..++.. ....
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~ 165 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLS 165 (296)
T ss_dssp TEEEEECSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEE
T ss_pred CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEE
Confidence 899999998877543221 11 123567899999 9988887 331 2345444443 3222
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC-CCCc---cceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
. +..+......++|+|++. .+++.+.++.|.+|++. ++.. ...+ .. ....+..++++++ +++
T Consensus 166 ~--~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~-------~~~~p~~i~~d~~-G~l 231 (296)
T 3e5z_A 166 A--PIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHF---TV-------EPGKTDGLRVDAG-GLI 231 (296)
T ss_dssp E--EECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEE---CC-------SSSCCCSEEEBTT-SCE
T ss_pred E--eecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEe---eC-------CCCCCCeEEECCC-CCE
Confidence 2 445566788999999995 55888888999999987 4443 1122 10 1224567899998 565
Q ss_pred EEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEE-cCCCCeeEeecCCcEEEEecCCC
Q 011160 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF-SDQSELLVSYNDEFIYLFTQDMG 292 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~~~i~~~d~~~~ 292 (492)
+++. ++.|.+|+.. ++.... ...+.. +.+++| .|+++.|++++.+.+..++..+.
T Consensus 232 ~v~~--~~~v~~~~~~-g~~~~~---------------~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~ 287 (296)
T 3e5z_A 232 WASA--GDGVHVLTPD-GDELGR---------------VLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVR 287 (296)
T ss_dssp EEEE--TTEEEEECTT-SCEEEE---------------EECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCC
T ss_pred EEEc--CCeEEEECCC-CCEEEE---------------EECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccc
Confidence 5555 7889999986 332211 111233 788999 58999888888888888887664
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=1.9e-13 Score=118.80 Aligned_cols=219 Identities=9% Similarity=0.058 Sum_probs=148.2
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeccCcC-cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecC-
Q 011160 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH- 149 (492)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~- 149 (492)
.+++|++++.++.|.+||.++|+.+.++. .+. ..+.++.++| +|++|++ .++.|..||. +++.+.. +..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~p--dG~ilvs--~~~~V~~~d~-~G~~~W~--~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATK--AGEILFS--YSKGAKMITR-DGRELWN--IAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECT--TSCEEEE--CBSEEEEECT-TSCEEEE--EECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECC--CCCEEEe--CCCCEEEECC-CCCEEEE--EcCCC
Confidence 46789999999999999998999998883 443 4788999999 9998883 4678999998 6776655 3333
Q ss_pred CCceEEEEEcCCCCcEEEEEcC-CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeE
Q 011160 150 QGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (492)
Q Consensus 150 ~~~v~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 228 (492)
...+.++.+.++| +++++.+. ++.|..+|. +++.+..+...... .. .......+++.++ ++++++...++.|
T Consensus 76 ~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~--~~--~~~~~~~v~~~~~-G~~lv~~~~~~~v 148 (276)
T 3no2_A 76 GCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGI--ER--PHAQFRQINKNKK-GNYLVPLFATSEV 148 (276)
T ss_dssp TCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSC--SS--GGGSCSCCEECTT-SCEEEEETTTTEE
T ss_pred CccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC--Cc--ccccccCceECCC-CCEEEEecCCCEE
Confidence 3578889999999 57777665 667777775 55555444322110 00 1112233445555 5566666666666
Q ss_pred EEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
..||.. ++. +|..
T Consensus 149 ~~~d~~-G~~-----------------------------------------------~w~~------------------- 161 (276)
T 3no2_A 149 REIAPN-GQL-----------------------------------------------LNSV------------------- 161 (276)
T ss_dssp EEECTT-SCE-----------------------------------------------EEEE-------------------
T ss_pred EEECCC-CCE-----------------------------------------------EEEE-------------------
Confidence 666654 331 1211
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCC---
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR--- 385 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~--- 385 (492)
..... ..++.. .++|+++++++.++.|..+|..+|+.+.++..+.
T Consensus 162 ----------------------------~~~~~---~~~~~~-~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~ 209 (276)
T 3no2_A 162 ----------------------------KLSGT---PFSSAF-LDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG 209 (276)
T ss_dssp ----------------------------ECSSC---CCEEEE-CTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS
T ss_pred ----------------------------ECCCC---ccceeE-cCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC
Confidence 11111 234555 7889999988888899999998899988886432
Q ss_pred ---ceeEEEeecCCCCeEEEee
Q 011160 386 ---HVVNCIEPHPHSTVLASSG 404 (492)
Q Consensus 386 ---~~v~~~~~s~~~~~l~s~~ 404 (492)
..+..++..++|.++++..
T Consensus 210 ~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 210 VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCCSEEEEEEECTTSCEEEEEE
T ss_pred ccccccccceEcCCCCEEEEec
Confidence 2378888899999888763
No 199
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=5.3e-14 Score=126.93 Aligned_cols=237 Identities=11% Similarity=0.021 Sum_probs=151.4
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC-
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD- 82 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d- 82 (492)
+.+.+++++++++..++.|.+||..++++. .....+...+.+++++|+|+++++...+
T Consensus 50 ~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------------~~~~~~~~~~~~i~~~~dg~l~v~~~~~~ 108 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------RPFVSHKANPAAIKIHKDGRLFVCYLGDF 108 (333)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------EEEECSSSSEEEEEECTTSCEEEEECTTS
T ss_pred cEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------------EEeeCCCCCcceEEECCCCcEEEEeCCCC
Confidence 456788998888888999999999877654 2222456789999999999988887766
Q ss_pred ---CeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecC------CCcEEEEecccCCeeeeEEeecCCCc
Q 011160 83 ---RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQGR 152 (492)
Q Consensus 83 ---~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~~~ 152 (492)
+.|.+||..++.....+. ..+...+.++++.| ++.++++... .+.|..++..++.... +......
T Consensus 109 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~ 183 (333)
T 2dg1_A 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP---IIQNISV 183 (333)
T ss_dssp SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE---EEEEESS
T ss_pred CCCceEEEEeCCCCEEEEEEccCccCCcccceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE---eecCCCc
Confidence 689999988776542321 13445789999999 8887776653 2455555544333222 2223345
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
+..++|+|++..++++.+.++.|.+|++.+ +.....+......... ....+..++++++ ++++++...++.|.+|
T Consensus 184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~~~i~~d~~-G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT---GHEGPDSCCIDSD-DNLYVAMYGQGRVLVF 259 (333)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC---SSSEEEEEEEBTT-CCEEEEEETTTEEEEE
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC---CCCCCCceEECCC-CCEEEEEcCCCEEEEE
Confidence 789999999854556666788999999864 3322221100000000 0124678999998 6777777778899999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
|.. ++....... .....++...+.+++|+|+++.|+.++
T Consensus 260 d~~-g~~~~~~~~---------~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 260 NKR-GYPIGQILI---------PGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp CTT-SCEEEEEEC---------TTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCC-CCEEEEEEc---------CCCccccccCcceEEECCCCCEEEEEe
Confidence 984 332211100 000001122578899999986665444
No 200
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=1.9e-14 Score=143.59 Aligned_cols=240 Identities=9% Similarity=-0.014 Sum_probs=158.2
Q ss_pred CCCCCCCceEeeccCcc-----eEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE
Q 011160 4 ASNNNNNKRARTSVDKA-----LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg-----~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (492)
+.++|||++||.+..++ .|++||+.+|+... ..+. ...+..++|+|||+.|+.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~--------------------~~~~--~~~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--------------------DVLE--RVKFSCMAWTHDGKGMFY 187 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--------------------EEEE--EECSCCEEECTTSSEEEE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc--------------------cccc--CcccceEEEEeCCCEEEE
Confidence 56899999998766543 89999999887651 1111 122567999999999999
Q ss_pred ecCCCe----------------EEEEECCCCcee--eeec-cCcCcceEEEEecCCCCCceEEeecC-----CCcEEEEe
Q 011160 79 GSDDRR----------------VILWDWKTERVK--LSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQ 134 (492)
Q Consensus 79 ~~~d~~----------------i~iwd~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~v~iw~ 134 (492)
++.++. |++|++.++... ..+. ..|...+..+.|+| ++++|+.++. +..|.+||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEE
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEE
Confidence 887765 999999887632 2221 22455688999999 9999887654 56899999
Q ss_pred ccc------CCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC---CcEEEEeCCCCCc--cceeecCCCCCCCcceee
Q 011160 135 ILE------RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAA--TELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 135 ~~~------~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 203 (492)
+.+ +... ...+..+...+.. .|+|+|..+++.+..+ +.|.+||+.++.. ...+..+. ..
T Consensus 266 ~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------~~ 335 (710)
T 2xdw_A 266 LQQESNGITGILK-WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--------EK 335 (710)
T ss_dssp GGGSSSSSCSSCC-CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--------SS
T ss_pred CcccccccCCccc-eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC--------CC
Confidence 976 4211 1225556555554 4888886555554433 3699999988753 12222110 11
Q ss_pred cceEEEEEcCCCCceEEEecCCCe--EEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee-c
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N 280 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~ 280 (492)
..+..++|+++ +.++++...++. |++|++.+++.... +..+...+..++++|++..++.. +
T Consensus 336 ~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~~---------------l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 336 DVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLKI---------------FPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp CEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEEE---------------ECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred CeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEEe---------------cCCCCceEEEEecCCCCCEEEEEEe
Confidence 24777888865 678888888885 55666645432111 11135568889999998755533 2
Q ss_pred C----CcEEEEecCCCC
Q 011160 281 D----EFIYLFTQDMGL 293 (492)
Q Consensus 281 ~----~~i~~~d~~~~~ 293 (492)
. ..+++||+.++.
T Consensus 400 s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 400 SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CSSCCCEEEEEETTSSS
T ss_pred CCCCCCEEEEEECCCCc
Confidence 2 369999998754
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=3.4e-13 Score=120.51 Aligned_cols=248 Identities=16% Similarity=0.171 Sum_probs=157.1
Q ss_pred cceEEEEEEcCCCCEEEE-------ecCCCeEEEEECCCCceeeeec---cCcCcceEEEEecCCCC-CceEEeecCCCc
Q 011160 61 RGCVNTVSFNTDGDILIS-------GSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTD-DRSIVTCAADGQ 129 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~ 129 (492)
-....+++|++++.++++ +..++.|.+|+..+++...... .++...+.++++.+ + +.++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~--~~g~l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec--CCCcEEEEEC-CCC
Confidence 344578999999988888 6778899999988777533221 12456789999998 8 66555544 447
Q ss_pred EEEEecccCCeeee-EEe--ecCCCceEEEEEcCCCCcEEEEEcCC---------------CcEEEEeCCCCCccceeec
Q 011160 130 VRHAQILERGGVET-KLL--GKHQGRAHKLAIEPGSPHVFYTCGED---------------GLVQHFDLRTGAATELFTC 191 (492)
Q Consensus 130 v~iw~~~~~~~~~~-~~~--~~~~~~v~~i~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~ 191 (492)
|.+|+.. ++.... ... ......+.++++.+++ +++++...+ +.|..|+.. ++......
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence 8889987 443211 000 0112457899999998 566665544 456666654 33222111
Q ss_pred CCCCCCCcceeecceEEEEEc----CCCCceEEEecCCCeEEEEeccc-ccccCCCCCCCCccccCCCCcCCCcccceEE
Q 011160 192 RPIDDRRNYMTVVNLNAIAID----PRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (492)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (492)
.......++++ |++..++++...++.|.+|++.. ++ +..
T Consensus 170 ----------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~--------------------------~~~ 213 (314)
T 1pjx_A 170 ----------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK--------------------------IEN 213 (314)
T ss_dssp ----------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE--------------------------EEE
T ss_pred ----------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc--------------------------ccc
Confidence 12234566777 76223344445566777777541 11 000
Q ss_pred EEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccc-cceee
Q 011160 267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-NCVTV 345 (492)
Q Consensus 267 ~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 345 (492)
. .++ ..+.++. . ..
T Consensus 214 ~-----------------~~~----------------------------------------------~~~~~~~~~--~p 228 (314)
T 1pjx_A 214 K-----------------KVW----------------------------------------------GHIPGTHEG--GA 228 (314)
T ss_dssp E-----------------EEE----------------------------------------------EECCCCSSC--EE
T ss_pred c-----------------eEE----------------------------------------------EECCCCCCC--CC
Confidence 0 000 0011111 1 14
Q ss_pred eeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCC-eEEEeeCCCCEEEeccCCC
Q 011160 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA 417 (492)
Q Consensus 346 ~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 417 (492)
..+++ +++|+++++...++.|.+|+..+++.+..+..+...+.+++|+|+++ ++++...++.|..|++...
T Consensus 229 ~~i~~-d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 229 DGMDF-DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEE-BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CceEE-CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 66787 99999888887889999999987888888877777899999999999 4455556789999998753
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.64 E-value=3.9e-14 Score=141.86 Aligned_cols=249 Identities=9% Similarity=0.039 Sum_probs=149.8
Q ss_pred CccceEEEEEEcCCCCEEEEecCC-----CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCc----
Q 011160 59 KHRGCVNTVSFNTDGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---- 129 (492)
+|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+| + +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wsp--D-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLG--N-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEEST--T-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEEC--C-CEEEEEEecCccccc
Confidence 345578899999999999877543 46999999999875432 1222346789999 9 88887776543
Q ss_pred ----------EEEEecccCCeeeeEEee--cCCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCC--Cccceee
Q 011160 130 ----------VRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTG--AATELFT 190 (492)
Q Consensus 130 ----------v~iw~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~ 190 (492)
|++|++.++.......+. .+...+..+.|+|+|. .|+..+.+ ..|++||+.++ +....+.
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 889998766532222232 2334588999999995 55555433 37999998876 3122222
Q ss_pred cCCCCCCCcceeecceEEEEEcCCCCceEEEecC----CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEE
Q 011160 191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG 266 (492)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (492)
.. ....... ++|+ +..|+..+. ++.|.+||+.++. .
T Consensus 314 ~~----------~~~~~~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~------------------------~---- 353 (741)
T 1yr2_A 314 PD----------LKAQWDF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGST------------------------P---- 353 (741)
T ss_dssp CS----------SSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSS------------------------C----
T ss_pred CC----------CCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCc------------------------c----
Confidence 11 0112222 2255 334444332 2235555543210 0
Q ss_pred EEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeee
Q 011160 267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (492)
Q Consensus 267 ~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 346 (492)
.....+..+.. .+.
T Consensus 354 ----------------------------------------------------------------~~~~l~~~~~~--~l~ 367 (741)
T 1yr2_A 354 ----------------------------------------------------------------RFDTVVPESKD--NLE 367 (741)
T ss_dssp ----------------------------------------------------------------EEEEEECCCSS--EEE
T ss_pred ----------------------------------------------------------------ccEEEecCCCC--eEE
Confidence 00001111111 145
Q ss_pred eEEeecCCCcEEEEeeccCeEEEEecC-CCeeeEEEec-CCceeEEEeecCCCCeEE----EeeCCCCEEEeccCCCCCC
Q 011160 347 GVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEA-DRHVVNCIEPHPHSTVLA----SSGIESDIKILTPNAADRA 420 (492)
Q Consensus 347 ~~~~~s~~g~~l~sg~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~~~ 420 (492)
.+.+ + ++.++++...|+..+||.+. +++....+.. +.+.|..++++|+++.|+ +....++|++||+.+++..
T Consensus 368 ~~~~-~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 368 SVGI-A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp EEEE-E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred EEEE-E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 5666 4 56788888889887777554 4666666664 357789999999998666 2334578999999887643
Q ss_pred c
Q 011160 421 T 421 (492)
Q Consensus 421 ~ 421 (492)
.
T Consensus 446 ~ 446 (741)
T 1yr2_A 446 P 446 (741)
T ss_dssp E
T ss_pred E
Confidence 3
No 203
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=1.5e-14 Score=143.79 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=128.1
Q ss_pred CCCCCCCceEe-----eccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE
Q 011160 4 ASNNNNNKRAR-----TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (492)
Q Consensus 4 ~~~~~~~~~l~-----t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (492)
+.++|||++|| .|+.+..|++||+.+|+.+.. ..+.... ...++|+|||+.|+.
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-------------------~~~~~~~--~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-------------------DVIEGGK--YATPKWTPDSKGFYY 184 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-------------------CCBSCCT--TCCCEECTTSSEEEE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-------------------cccCccc--ccceEEecCCCEEEE
Confidence 46899999999 677778999999998875400 1111111 157899999999999
Q ss_pred ecCCCe-------------EEEEECCCCcee--eee-ccCcCcceEEEEecCCCCCceEEeecCCC----cEEEEecccC
Q 011160 79 GSDDRR-------------VILWDWKTERVK--LSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG----QVRHAQILER 138 (492)
Q Consensus 79 ~~~d~~-------------i~iwd~~~~~~~--~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~v~iw~~~~~ 138 (492)
++.+.. |++|++.++... ..+ ...|...+..+.|+| +|++|+.++.++ .|.+|+..++
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 988776 999999887631 222 134556788999999 999998877655 6666665444
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEc---CCCcEEEEeCCCCCcc--ceeecCCCCCCCcceeecceEEEEEcC
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
... .+..+...+....+ +++. +++.+. .++.|.+||+.++... ..+.... ....+..++|+
T Consensus 263 ~~~---~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------~~~~l~~~~~~- 328 (695)
T 2bkl_A 263 DFR---LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED--------SSASLLSVSIV- 328 (695)
T ss_dssp SCE---EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC--------SSCEEEEEEEE-
T ss_pred ceE---EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC--------CCCeEEEEEEE-
Confidence 322 24455556666666 6674 555544 2578999999877531 1111110 12245667776
Q ss_pred CCCceEEEecCCCeEEEEecc
Q 011160 214 RNANLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~ 234 (492)
+ +.++++...++..++|.+.
T Consensus 329 ~-~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 329 G-GHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp T-TEEEEEEEETTEEEEEEEE
T ss_pred C-CEEEEEEEECCEEEEEEEe
Confidence 3 5677777888877777653
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=1.7e-12 Score=115.07 Aligned_cols=234 Identities=10% Similarity=0.017 Sum_probs=160.5
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (492)
+...+++++.++...++.|.+|+.. ++... ..+..+...+.++++.++++++++...++
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKE--------------------FEVPTPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEE--------------------EECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEE--------------------EECCCCCCcceeEEECCCCCEEEEecCCC
Confidence 3456778888887778899999887 55431 11223446788999999999888877788
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCC
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 163 (492)
.|..||.. ++............+.++++.+ ++.++++...++.|..++.. +... ...+......+.++++.+++
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g- 157 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDN- 157 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTS-
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCC-
Confidence 99999987 5543222222446789999998 88888877778889999876 4433 22233345678999999998
Q ss_pred cEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCC
Q 011160 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (492)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 243 (492)
+++++...++.|..++. +++... +.... ....+..++++++ +.++++....+.|.+|+. +++....
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~--------~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~~-- 223 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLEE-YPLPT--------NAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISEY-- 223 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEE--
T ss_pred CEEEEecCCCeEEEECC-CCcEEE-eeCCC--------CCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEEE--
Confidence 46666666788999998 554432 22110 1235788999997 667777667788999998 3322110
Q ss_pred CCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecC
Q 011160 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (492)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~ 290 (492)
........+.+++++++|+++++.. .+.|..|+..
T Consensus 224 ------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 224 ------------DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ------------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ------------ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 0111235678999999998766665 5689999873
No 205
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.59 E-value=2.3e-13 Score=122.98 Aligned_cols=277 Identities=10% Similarity=0.048 Sum_probs=170.6
Q ss_pred ceEEEEEEcCCCCEEEEec--CCCeEEEEECCCCceeeeec------cCcCcceEEEEecCCCCCceEEeecC-----CC
Q 011160 62 GCVNTVSFNTDGDILISGS--DDRRVILWDWKTERVKLSFH------SGHNDNVFQAKIMPFTDDRSIVTCAA-----DG 128 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg 128 (492)
.....++++|+|+++++.. .++.++||.+.+++. ..+. ..|...+..+++.+ +++++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence 6788999999999998863 234356666555543 3221 23456899999999 8876665433 57
Q ss_pred cEEEEecccCCeeeeEEee----cCCCceEEEEEcCCCCcEEEEEc---CCCcEEEEeCCCCCccceeecCCCCCCCcce
Q 011160 129 QVRHAQILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (492)
Q Consensus 129 ~v~iw~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (492)
.|.+||+.+++.+....+. .+...+..+++.+++..++++.. .++.|.+||+.+++....+..+...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~------ 167 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI------ 167 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT------
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc------
Confidence 8999999877655443332 12245689999986545556655 6789999999988755443211000
Q ss_pred eecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC
Q 011160 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (492)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 281 (492)
.... ..+.++ +..+.+.+.++.++.|. ..+..++|+|+++.|+.+..
T Consensus 168 ~~~~---~~~~~~-g~~~~~~~~~g~~~~~~-----------------------------~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 168 APED---IDLVID-GVPVQIGQPDGTVIRPH-----------------------------LGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp SCCS---CCCEET-TEECBEECTTSCEECCC-----------------------------CCEEEEEECTTSCEEEEEES
T ss_pred cccc---cceeEC-CEEEEeccCCCceecee-----------------------------cccceeEeccCCCEEEEEeC
Confidence 0000 223333 45566666677665442 13578999999998877763
Q ss_pred -C-cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCc--eeeccccceeeeeEEeecCCCcE
Q 011160 282 -E-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNFFGPKCEY 357 (492)
Q Consensus 282 -~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~s~~g~~ 357 (492)
+ .++.++......... ....... ...++... ...+++ +++|.+
T Consensus 215 ~~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~g~~g~--pdgia~-d~~G~l 261 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQL------------------------------TDAELGSKIERYSEKPI--CDGISI-DKDHNI 261 (343)
T ss_dssp SCSEEEEEEHHHHTCTTC------------------------------CHHHHHTTCEEEEECCS--CSCEEE-CTTCCE
T ss_pred CCCeEEEEEHHHhcCCCC------------------------------ChhhhhcceEecccCCC--CceEEE-CCCCCE
Confidence 3 455555321000000 0000000 11122221 467887 999999
Q ss_pred EEEeeccCeEEEEecCCCeeeEEEec-CCceeEEEeecCCCCeEEEeeCCCCEEEec
Q 011160 358 VVSGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (492)
Q Consensus 358 l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (492)
+++...++.|.+|+..+++....... +...+..++|.++++++++.+..+.+.+|.
T Consensus 262 ~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 262 YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 99999999999999866765433332 234589999999998888776555554444
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.58 E-value=9e-13 Score=120.11 Aligned_cols=291 Identities=13% Similarity=0.070 Sum_probs=182.3
Q ss_pred CCCCEEEEecC-C----CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec----------CCCcEEEEec
Q 011160 71 TDGDILISGSD-D----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQI 135 (492)
Q Consensus 71 ~~~~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~v~iw~~ 135 (492)
++++.+++... + +.|.++|..+++.+.++..+. .+ .++++| ++++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 46665555443 2 699999999999998885443 34 899999 999998876 3678999999
Q ss_pred ccCCeeeeEEeecC-----CCceEEEEEcCCCCcEEEEEcC--CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEE
Q 011160 136 LERGGVETKLLGKH-----QGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (492)
Q Consensus 136 ~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (492)
.+.+.+....+.+. ......++|+|++. +++++.. ++.|.+.|+.+++.+..+.... +
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--------------~ 221 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--------------C 221 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCS--------------E
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCC--------------c
Confidence 99887665433211 13456789999995 5565543 6889999999999887765321 1
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEE
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~ 287 (492)
....|++...+++.+.||.+.+.+...++...... ..+..........+.+.+++..++..+ .+.+.+.
T Consensus 222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~Vi 291 (426)
T 3c75_H 222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQA 291 (426)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEE
T ss_pred eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEE
Confidence 22334334556666677777777774443221000 000000001112356788876554444 6689999
Q ss_pred ecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec----
Q 011160 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---- 363 (492)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~---- 363 (492)
|.........-. ..... ............ ...+.+ +|+++.+++...
T Consensus 292 D~~~~~~~v~~~----------------------~~~~~-~~~i~~g~~p~g-----~~~va~-s~dg~rlyVa~~~~~~ 342 (426)
T 3c75_H 292 DLTAEGATFRAP----------------------IEALT-EAERADDWRPGG-----WQQTAY-HRQSDRIYLLVDQRDE 342 (426)
T ss_dssp EECSSCEEECCC----------------------EESSC-TTTGGGTEEECS-----SSCEEE-EGGGTEEEEEEEECCT
T ss_pred eccCCceEEeee----------------------eeecc-ccccccccccCC-----ceeeEE-cCCCCEEEEEeccccc
Confidence 986432100000 00000 000000000000 123566 999887776542
Q ss_pred ------cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCC-eEEEee-CCCCEEEeccCCCCCCc
Q 011160 364 ------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRAT 421 (492)
Q Consensus 364 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~ 421 (492)
.+.|.++|+.+.+.+.++... .....++|+||++ +++++. .++.|.++|+.+.+...
T Consensus 343 gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 343 WKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred ccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 357999999999999988643 3589999999999 888887 58999999999987653
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=1.4e-12 Score=116.48 Aligned_cols=240 Identities=8% Similarity=0.049 Sum_probs=154.6
Q ss_pred CCCCCCCceEee-------ccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC-CCE
Q 011160 4 ASNNNNNKRART-------SVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDI 75 (492)
Q Consensus 4 ~~~~~~~~~l~t-------~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~ 75 (492)
+.+.+++.++++ +..++.|.+||..+++... +.. ....++...+.+++++++ +++
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~----------------~~~-~~~~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV----------------ICK-PEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE----------------EEC-CEETTEECCEEEEEECSSSSEE
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE----------------EEe-cccCCCCCCCceEEEecCCCcE
Confidence 345688888888 6778999999988776541 000 011235567899999999 775
Q ss_pred EEEecCCCeEEEEECCCCceeeeeccC----cCcceEEEEecCCCCCceEEeecCC---------------CcEEEEecc
Q 011160 76 LISGSDDRRVILWDWKTERVKLSFHSG----HNDNVFQAKIMPFTDDRSIVTCAAD---------------GQVRHAQIL 136 (492)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~d---------------g~v~iw~~~ 136 (492)
+++... +.|.+|+.. ++........ ....+.++++.+ +++++++...+ +.|..|+..
T Consensus 86 ~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (314)
T 1pjx_A 86 FVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp EEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred EEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence 665543 479999988 6653220111 224588999999 88877776554 456666654
Q ss_pred cCCeeeeEEeecCCCceEEEEEc----CCCCcEEEEEcCCCcEEEEeCC-CCCccc--eeecCCCCCCCcceee-cceEE
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIE----PGSPHVFYTCGEDGLVQHFDLR-TGAATE--LFTCRPIDDRRNYMTV-VNLNA 208 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~~~~~dg~i~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~-~~v~~ 208 (492)
++... +..+......++++ |++..++++...++.|.+|++. +++... .+.... . +. ..+..
T Consensus 162 -g~~~~---~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-----~--~~~~~p~~ 230 (314)
T 1pjx_A 162 -GQMIQ---VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-----G--THEGGADG 230 (314)
T ss_dssp -SCEEE---EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-----C--CSSCEEEE
T ss_pred -CCEEE---eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-----C--CCCCCCCc
Confidence 33221 22233456889999 9985445555678899999986 343211 111100 0 11 34678
Q ss_pred EEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEE
Q 011160 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYL 286 (492)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~ 286 (492)
++++++ ++++++...++.|.+||..+++.... ...+...+.+++|+|+++.|+.++ ++.|..
T Consensus 231 i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~---------------~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 231 MDFDED-NNLLVANWGSSHIEVFGPDGGQPKMR---------------IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EEEBTT-CCEEEEEETTTEEEEECTTCBSCSEE---------------EECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEE---------------EeCCCCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence 999998 67777776788999999875543211 111235689999999999565554 348999
Q ss_pred EecCC
Q 011160 287 FTQDM 291 (492)
Q Consensus 287 ~d~~~ 291 (492)
|++..
T Consensus 295 ~~~~~ 299 (314)
T 1pjx_A 295 FEWQR 299 (314)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 99865
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.56 E-value=7.2e-12 Score=115.47 Aligned_cols=259 Identities=10% Similarity=0.057 Sum_probs=164.2
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC--cEEEEecccCC
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERG 139 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~ 139 (492)
.....|+|+++++++++...++.|++||..++...... ... .... ++|+| +++.|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEec--CCCcEEEEecCCCceEEEEEcCCCc
Confidence 46789999999998888888899999999877764433 332 2334 99999 999888888765 78888876654
Q ss_pred eeeeE-Eeec-CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 140 GVETK-LLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 140 ~~~~~-~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
..... .+.. ....+.+++++|++.. |+.+..++.|+.||..++... .+......... ...+...++|+|+++.
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~---~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSL---GTNPGPYLIYYFVDSN 280 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEE-EEEECCCCSCC---CCSSCCEEEEETTTTE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEE-EEecccccCCC---CCCccccEEEeCCCCE
Confidence 42221 1112 4466789999995434 455777889999999877532 22110000000 1011127889986566
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCC
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP 297 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~ 297 (492)
++++-...+.|+.|+.... +..++-.+.. .+. ..+
T Consensus 281 lyv~d~~~~~I~~~~~~g~---------------------------~~~~~g~~~~-------~g~------~dg----- 315 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE---------------------------CEWFCGSATQ-------KTV------QDG----- 315 (409)
T ss_dssp EEEEETTTTEEEEECTTCC---------------------------EEEEEECTTC-------CSC------BCE-----
T ss_pred EEEEeCCCCEEEEEecCCC---------------------------EEEEEeCCCC-------CCc------CCC-----
Confidence 7777777778888775421 1111000000 000 000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee-ccCeEEEEecCCCe
Q 011160 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGE 376 (492)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~-~dg~i~iwd~~~~~ 376 (492)
......+ . ....+++ +|+|+++++-+ .++.|+.|++.+++
T Consensus 316 --------------------------------~~~~~~~----~--~P~gia~-d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 316 --------------------------------LREEALF----A--QPNGMTV-DEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp --------------------------------EGGGCBC----S--SEEEEEE-CTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred --------------------------------cccccEe----C--CCeEEEE-eCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 0000001 1 1467888 99999888877 88999999987887
Q ss_pred eeEEEecC---------------CceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 377 LIRVIEAD---------------RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 377 ~~~~~~~h---------------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
. ..+.++ -..+..+++++++.++++-..+++|+.++++
T Consensus 357 v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 357 V-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp E-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred E-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 4 444443 2358899999998888888888888887763
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.55 E-value=5.3e-13 Score=119.69 Aligned_cols=291 Identities=10% Similarity=-0.026 Sum_probs=180.0
Q ss_pred ceEeeccCcc----eEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEec------
Q 011160 11 KRARTSVDKA----LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------ 80 (492)
Q Consensus 11 ~~l~t~~~dg----~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------ 80 (492)
..+++...++ +|.+.|..+++++ .++..-..+ .++++||+++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~---------------------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~ 89 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTL---------------------GHSLGAFLS--LAVAGHSGSDFALASTSFARS 89 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEE---------------------EEEEECTTC--EEEECTTSSCEEEEEEEETTT
T ss_pred eEEEECCccCCccceEEEEECCCCeEE---------------------EEEeCCCCC--ceEECCCCCEEEEEccccccc
Confidence 3455555444 8889999988877 444433345 799999999888875
Q ss_pred ----CCCeEEEEECCCCceeeeeccCc------CcceEEEEecCCCCCceEEeecC--CCcEEE--EecccCCeeeeEEe
Q 011160 81 ----DDRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCAA--DGQVRH--AQILERGGVETKLL 146 (492)
Q Consensus 81 ----~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~--dg~v~i--w~~~~~~~~~~~~~ 146 (492)
.++.|.+||+.+++.+.++..+. ......++++| ++++++++.. ...|.+ +|+.+ +.....
T Consensus 90 ~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp--DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred ccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36889999999999988874220 12456899999 9999998864 457888 99877 222112
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-----CCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE
Q 011160 147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (492)
Q Consensus 147 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (492)
. .. +.+.|++...+++.+.||.+.+.++.+ ++...... ..... ...+. . .++++ .++.
T Consensus 165 ~---~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~~i~v----g~~P~---~-~~~~~-~~~~ 227 (368)
T 1mda_H 165 A---SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--GAQNC----SSQAA---Q-ANYPG-MLVW 227 (368)
T ss_dssp S---SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--TTSCB----CSCCE---E-ETTTT-EEEE
T ss_pred C---Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee--eeeeC----CCCcc---c-cccCC-EEEE
Confidence 1 11 224466656777788899998899887 33221110 00000 11122 3 55534 4444
Q ss_pred ecCCCeEEEEeccccc--ccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--C--------CcEEEEec
Q 011160 222 AGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D--------EFIYLFTQ 289 (492)
Q Consensus 222 ~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~--------~~i~~~d~ 289 (492)
.+. +.+.+.|+.... ......+..... ............++++|+++.++.+. . +.+.++|.
T Consensus 228 vs~-~~V~viD~~~~~~~v~~~~~~~~~~~-----~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~ 301 (368)
T 1mda_H 228 AVA-SSILQGDIPAAGATMKAAIDGNESGR-----KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp CBS-SCCEEEECCSSCCEEECCCCSSCTHH-----HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred EcC-CEEEEEECCCCcceEEEEEEeccccc-----cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence 445 899999986532 111111100000 00000111222268999998776542 2 35779999
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc-EEEEee-ccCeE
Q 011160 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRI 367 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~-~l~sg~-~dg~i 367 (492)
.+. +.+..+..... ...+.| +|||+ ++++.. .++.|
T Consensus 302 ~t~--------------------------------------~vv~~i~vg~~---p~gi~~-s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 302 SVG--------------------------------------QTSGPISNGHD---SDAIIA-AQDGASDNYANSAGTEVL 339 (368)
T ss_dssp SSC--------------------------------------CEEECCEEEEE---ECEEEE-CCSSSCEEEEEETTTTEE
T ss_pred CCC--------------------------------------eEEEEEECCCC---cceEEE-CCCCCEEEEEccCCCCeE
Confidence 874 33334433322 578888 99998 455555 58999
Q ss_pred EEEecCCCeeeEEEecCCceeEEEeecC
Q 011160 368 FIWKKKGGELIRVIEADRHVVNCIEPHP 395 (492)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (492)
.++|+.+++.+.++..... ...+++.+
T Consensus 340 sVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 9999999999999976543 55666654
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.55 E-value=2.6e-11 Score=107.13 Aligned_cols=234 Identities=11% Similarity=0.117 Sum_probs=139.8
Q ss_pred ccceEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC
Q 011160 60 HRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (492)
Q Consensus 60 h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 138 (492)
+..---+..|+|+ +.++++...++.|..||..++.. ..+ .....+.++++.| +++++++ . ++.|.+||..++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~--dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQ--SGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBT--TSSEEEE-E-TTEEEEEETTTT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECC--CCCEEEE-E-CCeEEEEECCCC
Confidence 3444568899995 55667777789999999987765 233 2446799999999 8885554 3 567999998766
Q ss_pred CeeeeEEeec--CCCceEEEEEcCCCCcEEEEEcCC---------CcEEEEeCCC-CCccceeecCCCCCCCcceeecce
Q 011160 139 GGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 139 ~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
.......... ....++.+++.|+|. ++++.... ..-.+|.+.. ++...... .....
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------~~~~p 151 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-----------QVDIS 151 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------EESBE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEee-----------ccccc
Confidence 5432211111 124578899999994 54443221 1123333322 11111111 11223
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecc--cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI 284 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i 284 (492)
+.++|+|++..++++.+.++.|.+|++. ++. +..
T Consensus 152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~--------------------------~~~------------------ 187 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ--------------------------ISN------------------ 187 (297)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC--------------------------EEE------------------
T ss_pred cceEEcCCCCEEEEecCCCCcEEEEeccCCCCc--------------------------ccC------------------
Confidence 5566666532233444445555555542 110 000
Q ss_pred EEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc
Q 011160 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (492)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d 364 (492)
......+..+.. ....+++ +++|++.++....
T Consensus 188 ---------------------------------------------~~~~~~~~~~~~--~p~g~~~-d~~G~lwva~~~~ 219 (297)
T 3g4e_A 188 ---------------------------------------------RRSVYKLEKEEQ--IPDGMCI-DAEGKLWVACYNG 219 (297)
T ss_dssp ---------------------------------------------EEEEEECCGGGC--EEEEEEE-BTTSCEEEEEETT
T ss_pred ---------------------------------------------cEEEEECCCCCC--CCCeeEE-CCCCCEEEEEcCC
Confidence 000001111111 2567887 9999988888778
Q ss_pred CeEEEEecCCCeeeEEEecCCceeEEEeec-CCCCeEEEee
Q 011160 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSG 404 (492)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~ 404 (492)
+.|.+||..+++.+..+..+...+++++|. |+++.|..++
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 899999999999999998887789999998 8887655444
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.51 E-value=2.3e-13 Score=122.27 Aligned_cols=181 Identities=11% Similarity=0.162 Sum_probs=132.6
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---------eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER---------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
+++.+++++...++++|+.++ +++|+++... ........+.. |++++| ++.+|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence 689999999999999999875 6779875433 11111124556 999999 57888888 78999999
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
|+.+...... ...|...+.++.+.+. + +++++.||.|.+||+.++.... ....|.+++|+|
T Consensus 112 dv~sl~~~~~--~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~--------------~~~~Vs~v~WSp 172 (388)
T 1xip_A 112 DLEELSEFRT--VTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ--------------LAQNVTSFDVTN 172 (388)
T ss_dssp ESSSTTCEEE--EEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE--------------EEESEEEEEECS
T ss_pred EchhhhccCc--cceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc--------------ccCCceEEEEcC
Confidence 9987664333 5567778888877654 2 7888999999999999877542 223699999999
Q ss_pred CCCceEEEecCCCeEEEEecccccc--cCCCCCCCCccccCCCCcCC--CcccceEEEEEcCCCCeeEeec
Q 011160 214 RNANLFAVAGSDEYTRLYDIRKYKW--DGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
+ | ++.|..||++++|+....+. ...+ .++..+.. .|...|.++.|.+++.++++..
T Consensus 173 k-G--~~vg~~dg~i~~~~~~~~~~~~k~~I--------~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 S-Q--LAVLLKDRSFQSFAWRNGEMEKQFEF--------SLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp S-E--EEEEETTSCEEEEEEETTEEEEEEEE--------CCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred C-c--eEEEEcCCcEEEEcCCCcccccccee--------cCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 8 4 67789999999998876552 1110 01111111 3568899999999999988744
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.51 E-value=4.5e-12 Score=125.68 Aligned_cols=250 Identities=12% Similarity=0.096 Sum_probs=148.7
Q ss_pred cCccceEEEEEEcCCCCEEEE-----ecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC----
Q 011160 58 DKHRGCVNTVSFNTDGDILIS-----GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---- 128 (492)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---- 128 (492)
.+|...+..++|||||++||. |+....|++||+.+++.+..... ......++|+ |++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws---Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL---GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE---TTTEEEEEESSCCC--
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe---CCCEEEEEEecCcccc
Confidence 346678999999999999983 44446899999999986543211 1123567887 677777766653
Q ss_pred ---------cEEEEecccCCeeeeEEe--ec-CCCceEEEEEcCCCCcEEEEEcC---CCcEEEEeCCCCC-ccceeecC
Q 011160 129 ---------QVRHAQILERGGVETKLL--GK-HQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGA-ATELFTCR 192 (492)
Q Consensus 129 ---------~v~iw~~~~~~~~~~~~~--~~-~~~~v~~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~ 192 (492)
.|++|++.+........+ .. |...+..+.|+|++..++++.+. ...|+++|+.++. ....+...
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 499999877654222212 23 44457889999999655555443 2579999987764 22222211
Q ss_pred CCCCCCcceeecceEEEEEcCCCCceEEEecCC---CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEE
Q 011160 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (492)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (492)
....... ++++++.+++....+ +.|..+++.++.
T Consensus 280 ----------~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-------------------------------- 316 (693)
T 3iuj_A 280 ----------LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-------------------------------- 316 (693)
T ss_dssp ----------SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC--------------------------------
T ss_pred ----------CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC--------------------------------
Confidence 1111222 444434444443332 334444443321
Q ss_pred cCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEE
Q 011160 270 SDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349 (492)
Q Consensus 270 s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 349 (492)
....+.+..|... +. .
T Consensus 317 ------------------------------------------------------------~~~~~~l~~~~~~--~~--~ 332 (693)
T 3iuj_A 317 ------------------------------------------------------------PAHWRDLIPERQQ--VL--T 332 (693)
T ss_dssp ------------------------------------------------------------GGGCEEEECCCSS--CE--E
T ss_pred ------------------------------------------------------------ccccEEEecCCCC--EE--E
Confidence 0011223333332 22 4
Q ss_pred eecCCCcEEEEeecc-C--eEEEEecCCCeeeEEEe-cCCceeEEEeecCCCCeEEEeeCC----CCEEEeccCCCCCCc
Q 011160 350 FFGPKCEYVVSGSDC-G--RIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIE----SDIKILTPNAADRAT 421 (492)
Q Consensus 350 ~~s~~g~~l~sg~~d-g--~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~~~~ 421 (492)
| ++++++|+....+ + .|++|++..+ ....+. .+.+.+..+.+++++..|+....+ ++|..|++.+++...
T Consensus 333 ~-s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~ 410 (693)
T 3iuj_A 333 V-HSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL 410 (693)
T ss_dssp E-EEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred E-EEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence 5 7888877766544 3 6899998744 445554 344678888999998876655444 789999998776443
No 213
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.48 E-value=4.8e-12 Score=124.53 Aligned_cols=362 Identities=12% Similarity=0.051 Sum_probs=186.6
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCcc-ceE-EEEEEcCCCCEEEEecCCCeEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+..|++++.++.|..+|..+|+++-+..... ... ...... ..+ ..+++ .+..|+.++.|+.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~---~~~---------~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQS---DRH---------RAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCC---CGG---------GGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCC---Ccc---------ccccccccCCCCccEE--ECCEEEEEccCCEEEE
Confidence 4556667778899999999998773210000 000 000000 000 01122 3567888889999999
Q ss_pred EECCCCceeeeeccC-cCcceEEEEecCCC-CCceEEeec-----CCCcEEEEecccCCeeeeEEeec------------
Q 011160 88 WDWKTERVKLSFHSG-HNDNVFQAKIMPFT-DDRSIVTCA-----ADGQVRHAQILERGGVETKLLGK------------ 148 (492)
Q Consensus 88 wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~------------ 148 (492)
+|..+|+.+..+... +......+..+|.- ++..++..+ .+|.|..||..+++.+.......
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 999999998777432 21111111111110 444444322 36899999999988765532110
Q ss_pred -----------------CCCceEEEEEcCCCCcEEEEEcCCC-------------------cEEEEeCCCCCccceeecC
Q 011160 149 -----------------HQGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFTCR 192 (492)
Q Consensus 149 -----------------~~~~v~~i~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~ 192 (492)
+......+++.|+. .+++.++.++ .|..+|.++++.+..++..
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~ 294 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT 294 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred cccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC
Confidence 00111257888877 4778887765 3999999999988777643
Q ss_pred CCCCCCcceeecceEEEEEcCCCCc---eEEEecCCCeEEEEecccccccCCCCCCCCc-c-------------------
Q 011160 193 PIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA-D------------------- 249 (492)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-~------------------- 249 (492)
...... +.....+.......+ +. .++.++.+|.++++|.++++.+....+.... .
T Consensus 295 ~~d~wd-~~~~~~~~l~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~ 372 (689)
T 1yiq_A 295 PGDAWD-YTATQHMILAELPID-GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAY 372 (689)
T ss_dssp TTCCSC-CCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCT
T ss_pred Cccccc-ccCCCCcEEEeeccC-CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccc
Confidence 211110 001111111122223 33 7889999999999999999876332221100 0
Q ss_pred -------ccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCCCCCCCCCCCCcccc-ccccCC------
Q 011160 250 -------YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSE-ASEMGS------ 314 (492)
Q Consensus 250 -------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~------ 314 (492)
..++. ...+ ..-..++++|+..++++...+ ...++...... .+...+.....- .....|
T Consensus 373 ~~~~~~~~~~p~-~~Gg--~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~p~~~~~~ 446 (689)
T 1yiq_A 373 WKNGKRNLVTPA-FWGA--HDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP---KRNPFKSMYQLGLRTGMMPEGAEGL 446 (689)
T ss_dssp TTSSSCEEESSC-TTCS--SCSSCCEEETTTTEEEEEEEECCEEEECCSSCC---CCCSCTTSCCCSSEECCCCSSHHHH
T ss_pred cCCCCeeEeCCC-cccc--cCCCcceECCCCCEEEEeccccceeeeeccccc---cccccccccccCccccccCcccccC
Confidence 00000 0000 012337889988887776643 33333322210 000000000000 000000
Q ss_pred -----C-CCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCce-
Q 011160 315 -----D-HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV- 387 (492)
Q Consensus 315 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~- 387 (492)
. ...+... +....+.+-.+..+.. ...-.+ ...+.+++.|+.||.|+.||..+|+.+..++...+.
T Consensus 447 ~~~~~~~~g~l~A~---D~~tG~~~W~~~~~~~---~~~g~~-~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~ 519 (689)
T 1yiq_A 447 LEMAKSWSGKLIAW---DPVKQQAAWEVPYVTI---FNGGTL-STAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM 519 (689)
T ss_dssp HHHHTTCEEEEEEE---ETTTTEEEEEEEESSS---CCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCCCCCcceeEEEE---ECCCCCeEeEccCCCC---ccCccc-eECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence 0 0000000 0011122222222221 222233 556789999999999999999999999888755432
Q ss_pred eEEEeecCCCCeEE
Q 011160 388 VNCIEPHPHSTVLA 401 (492)
Q Consensus 388 v~~~~~s~~~~~l~ 401 (492)
..-+.|..+|+.++
T Consensus 520 ~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 520 AAPVTYSVDGEQYV 533 (689)
T ss_dssp SCCEEEEETTEEEE
T ss_pred cCceEEEECCEEEE
Confidence 24567778887443
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=1.5e-11 Score=108.59 Aligned_cols=220 Identities=14% Similarity=0.089 Sum_probs=143.0
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
++.++++...++.|..||..+++.. .+ .+...+.+++++|+|+++++. ++.|.+|
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~----------------------~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~ 78 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ----------------------RV-TMDAPVSSVALRQSGGYVATI--GTKFCAL 78 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE----------------------EE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE----------------------EE-eCCCceEEEEECCCCCEEEEE--CCeEEEE
Confidence 5667788888899999999876542 11 134678999999999966654 4679999
Q ss_pred ECCCCceeeeecc--C-cCcceEEEEecCCCCCceEEeecC---------CCcEEEEecccCCeeeeEEeecCCCceEEE
Q 011160 89 DWKTERVKLSFHS--G-HNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 89 d~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~l~~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i 156 (492)
|..+++....... . ....++.+++.| +|+++++... ...-.||.+........ +..+....+.+
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~pngi 154 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDISNGL 154 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESBEEEE
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--Eeeccccccce
Confidence 9988765322211 1 224588999999 9987665422 13345666554333222 23333456899
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeC--CCCCccc--eeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDL--RTGAATE--LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
+|+|++..++++.+.++.|.+|++ .++.... .+..... ....+..++++++ +++.++....+.|..||
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-------~~~~p~g~~~d~~-G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-------EEQIPDGMCIDAE-GKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-------GGCEEEEEEEBTT-SCEEEEEETTTEEEEEC
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-------CCCCCCeeEECCC-CCEEEEEcCCCEEEEEc
Confidence 999999656667777899999987 4554321 1111000 1234678999998 67777777788899999
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc-CCCCeeEeec
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN 280 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~ 280 (492)
..+++...... .+...+++++|. |+++.|+.++
T Consensus 227 ~~tG~~~~~i~---------------~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 227 PVTGKRLQTVK---------------LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TTTCCEEEEEE---------------CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCceEEEEEE---------------CCCCCceEEEEeCCCCCEEEEEc
Confidence 98776443211 123468999998 7877655443
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.47 E-value=2.4e-10 Score=102.29 Aligned_cols=229 Identities=12% Similarity=0.087 Sum_probs=139.1
Q ss_pred eEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCee
Q 011160 63 CVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (492)
Q Consensus 63 ~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 141 (492)
-..+.+|+|++ .++++...++.|..|+..+++.. .+ .....+.+++|.| +++++++. .+ .|.+||..++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~v~~i~~~~--dg~l~v~~-~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE--ECCCcceEEEEeC--CCeEEEEE-CC-CEEEEECCCCcEE
Confidence 34678999974 56667777889999999877643 33 2345799999999 88877765 33 4899998776543
Q ss_pred eeEEeec--CCCceEEEEEcCCCCcEEEEEcC------CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 142 ETKLLGK--HQGRAHKLAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 142 ~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
....... ....+.+++++|+|. ++++... .+.|..++ +++...... .....+.++|+|
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-----------~~~~~~~i~~s~ 188 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-----------DISIPNSICFSP 188 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-----------EESSEEEEEECT
T ss_pred EEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-----------CCcccCCeEEcC
Confidence 2211111 123688999999994 5444322 23444444 333221111 112345677777
Q ss_pred CCCceEEEecCCCeEEEEecc--cc-cccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 214 RNANLFAVAGSDEYTRLYDIR--KY-KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
++..++++.+.++.|.+|++. ++ +.. . . +++
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------------------~--~--------------------~~~--- 222 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTG---------------------K--A--------------------EVF--- 222 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSS---------------------C--C--------------------EEE---
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCccc---------------------C--c--------------------eEE---
Confidence 733333444556677777764 22 100 0 0 000
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
..+..... ....+++ +++|.+.++...++.|.+|
T Consensus 223 -------------------------------------------~~~~~~~~--~p~gi~~-d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 223 -------------------------------------------IDSTGIKG--GMDGSVC-DAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp -------------------------------------------EECTTSSS--EEEEEEE-CTTSCEEEEEETTTEEEEE
T ss_pred -------------------------------------------EECCCCCC--CCCeeEE-CCCCCEEEEEeCCCEEEEE
Confidence 00000001 1456777 8999887777667899999
Q ss_pred ecCCCeeeEEEecCCceeEEEeec-CCCCeEEEeeC
Q 011160 371 KKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSGI 405 (492)
Q Consensus 371 d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~ 405 (492)
+. +++.+..+..+...+++++|+ |+++.|+.++.
T Consensus 257 d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 257 DT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 98 678888887777779999998 88876654443
No 216
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=2e-12 Score=129.42 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=149.8
Q ss_pred CCCCCCCceEeeccCc-----ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEE
Q 011160 4 ASNNNNNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~d-----g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 78 (492)
+.++|||++||.++.+ ..|++||+.+|+.+. ...+...+..++|+|| +.|+.
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~----------------------~~~~~~~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA----------------------DELKWVKFSGLAWLGN-DALLY 224 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE----------------------EEEEEEESCCCEESTT-SEEEE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC----------------------ccCCCceeccEEEECC-CEEEE
Confidence 5689999998887644 469999999887651 0111222357899999 98988
Q ss_pred ecCCCe--------------EEEEECCCCce--eeeec-cCcCcceEEEEecCCCCCceEEeecCC-----CcEEEEecc
Q 011160 79 GSDDRR--------------VILWDWKTERV--KLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQIL 136 (492)
Q Consensus 79 ~~~d~~--------------i~iwd~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~ 136 (492)
++.++. |++|++.++.. ...+. ..+...+..+.|+| +|++|+..+.+ ..|++||+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~ 302 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVT 302 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECC
Confidence 876554 89999987653 12221 22334588999999 99988877654 389999998
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC----CCcEEEEeCCCCC-ccceeecCCCCCCCcceeecceEEEEE
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE----DGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
++.......+..+...+.... +|++. .|+..+. ++.|.+||+.++. ....+... +...+..+++
T Consensus 303 ~~~~~~~~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~---------~~~~l~~~~~ 371 (741)
T 1yr2_A 303 NGKIGPVTALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE---------SKDNLESVGI 371 (741)
T ss_dssp TTEECCCEEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECC---------CSSEEEEEEE
T ss_pred CCCCcccEEecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecC---------CCCeEEEEEE
Confidence 762110122444544555543 47885 4455443 3459999998752 22222111 1223566777
Q ss_pred cCCCCceEEEecCCCeEEEEecc-cccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee-cC----CcEE
Q 011160 212 DPRNANLFAVAGSDEYTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-ND----EFIY 285 (492)
Q Consensus 212 ~p~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~----~~i~ 285 (492)
+ ++.++++...++..++|.+. .++... .+.......+..++++|+++.|+.. ++ +.|+
T Consensus 372 ~--~~~lv~~~~~dg~~~l~~~~~~g~~~~--------------~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 372 A--GNRLFASYIHDAKSQVLAFDLDGKPAG--------------AVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp E--BTEEEEEEEETTEEEEEEEETTSCEEE--------------ECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred E--CCEEEEEEEECCEEEEEEEeCCCCcee--------------eccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 6 36788888889988877654 222111 1111224568889999998755532 22 3699
Q ss_pred EEecCCCC
Q 011160 286 LFTQDMGL 293 (492)
Q Consensus 286 ~~d~~~~~ 293 (492)
+||+.++.
T Consensus 436 ~~d~~tg~ 443 (741)
T 1yr2_A 436 ALDPATAK 443 (741)
T ss_dssp EEETTTTE
T ss_pred EEECCCCc
Confidence 99987753
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.46 E-value=1.4e-11 Score=120.96 Aligned_cols=378 Identities=11% Similarity=0.011 Sum_probs=193.6
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (492)
+..|.+++.++.|..+|..+|+.+-+..... ..... ... .... .-..+++ ++..|+.++.|+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~---~~~~~----~~~-~~~~--~~~~~a~--~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQI---DRSTG----FKG-CCDV--VNRGVAL--WKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCC---CGGGG----GGS-SSCS--CCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCC---Ccccc----ccc-cccC--CCCCceE--ECCEEEEEcCCCEEEEEE
Confidence 3456666668889999999888773210000 00000 000 0000 0012222 356788888999999999
Q ss_pred CCCCceeeeeccCcC----cceEE-EEecCCCCCceEEeecC------CCcEEEEecccCCeeeeEEeecCC--------
Q 011160 90 WKTERVKLSFHSGHN----DNVFQ-AKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQ-------- 150 (492)
Q Consensus 90 ~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~-------- 150 (492)
..+|+.+..+..... ..+.+ ... .+..+++++. +|.|+.+|..+++.+.........
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v----~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~ 220 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRV----FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDE 220 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEE----ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEE----ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccc
Confidence 999999887732201 11211 111 2334454443 689999999998876553321111
Q ss_pred ----------------------CceEEEEEcCCCCcEEEEEcCCC-------------------cEEEEeCCCCCcccee
Q 011160 151 ----------------------GRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELF 189 (492)
Q Consensus 151 ----------------------~~v~~i~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~ 189 (492)
.....+++.|++. +++.++.++ .|..+|.++++....+
T Consensus 221 ~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~ 299 (677)
T 1kb0_A 221 SMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY 299 (677)
T ss_dssp HHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred ccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE
Confidence 1113578888874 667776553 5999999999988777
Q ss_pred ecCCCCCCCcceeecceEEEEEcCCCC---ceEEEecCCCeEEEEecccccccCCCCCCCCc------------c-----
Q 011160 190 TCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA------------D----- 249 (492)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~------------~----- 249 (492)
+......... ........+....+ + ..++.++.+|.++++|..+++.+....+.... .
T Consensus 300 ~~~~~d~wd~-~~~~~p~l~~~~~d-G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 300 QETPGDNWDY-TSTQPMILADIKIA-GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp ESSTTCCSCC-CCCSCCEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred ecCCCccccc-ccCCCcEEEecccC-CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 6432211100 00111222233334 4 67899999999999999999876544332100 0
Q ss_pred ------ccCCCCcCCCcccceEEEEEcCCCCeeEeecCC-cEEEEecCCCCCCC-CCCCCCCCcccc-----ccccCC--
Q 011160 250 ------YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPN-PPPSSPVSTRSE-----ASEMGS-- 314 (492)
Q Consensus 250 ------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~i~~~d~~~~~~~~-~~~~~~~~~~~~-----~~~~~~-- 314 (492)
..++. .... ..-..++++|++.++++...+ ...++....-..-. .....+...... .....+
T Consensus 378 ~~~~~~~~~P~-~~G~--~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 454 (677)
T 1kb0_A 378 DGSKPQDAVPG-PYGA--HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSK 454 (677)
T ss_dssp CTTSCEECSSC-TTCS--SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSC
T ss_pred cCCCccEECcC-cccc--cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCC
Confidence 00000 0000 011357889988887776532 22222221000000 000000000000 000000
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCc-eeEEEee
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH-VVNCIEP 393 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~ 393 (492)
....+... +....+.+..+.... . +.+..+ ...+.+++.++.||.+++||..+|+.+..+....+ .-.-+.|
T Consensus 455 ~~g~l~A~---D~~tG~~~W~~~~~~-~--~~~g~~-~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y 527 (677)
T 1kb0_A 455 PFGRLLAW---DPVAQKAAWSVEHVS-P--WNGGTL-TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY 527 (677)
T ss_dssp CEEEEEEE---ETTTTEEEEEEEESS-S--CCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CccEEEEE---eCCCCcEEeecCCCC-C--CcCcce-EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEE
Confidence 00000000 000111122222111 1 233334 56777888899999999999999999998875432 2344566
Q ss_pred cCCCCeEEEe-eC----------------CCCEEEeccCC
Q 011160 394 HPHSTVLASS-GI----------------ESDIKILTPNA 416 (492)
Q Consensus 394 s~~~~~l~s~-~~----------------dg~i~iw~~~~ 416 (492)
.++|+.++.. +. .+.+.+|.+..
T Consensus 528 ~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 528 MVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred EeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 7788754432 22 36788888763
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=6.9e-11 Score=107.30 Aligned_cols=250 Identities=10% Similarity=0.000 Sum_probs=151.5
Q ss_pred CCCCCCCceEeecc----------CcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCC
Q 011160 4 ASNNNNNKRARTSV----------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG 73 (492)
Q Consensus 4 ~~~~~~~~~l~t~~----------~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 73 (492)
+.++|++++|.++. .++.|.+||..+++.+.. +.+....... +...-..++|+|||
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~-------------i~~~~~~~~~-~g~~p~~~~~spDG 136 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD-------------IELPDAPRFD-VGPYSWMNANTPNN 136 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEE-------------EECCCccccc-cCCCccceEECCCC
Confidence 46789999988875 367899999987776521 0000000000 01223588999999
Q ss_pred CEEEEecC--CCeEEEEECCCCceeee-eccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEe---e
Q 011160 74 DILISGSD--DRRVILWDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---G 147 (492)
Q Consensus 74 ~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~---~ 147 (492)
++|+++.. ++.|.++| .+++.+.. +. ... ++.+.|. ....+++.+.||.+.+++. +++....... .
T Consensus 137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~-~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPG-APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred CEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeC-CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 99998864 47899999 99988777 52 112 2444551 2345667778999999999 7665422110 0
Q ss_pred cCCCce-EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc--ceeecCCCCC-CCcceeecceEEEEEcCCCCceEEEec
Q 011160 148 KHQGRA-HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDD-RRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 148 ~~~~~v-~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
....++ ....+.+++..++++ +..+.+.+.|+.+.... ..+....... ..+. .......+.++|++ ..++++.
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~-~p~g~~~~~~s~d~-~~lyV~~ 285 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTW-RPGGWQQVAYLKSS-DGIYLLT 285 (373)
T ss_pred cCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccce-ecCceEeEEECCCC-CEEEEEe
Confidence 111221 234566666444444 46789999999765322 2221110000 0000 12234457899984 4555443
Q ss_pred C----------CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCC-eeEeec--CCcEEEEecC
Q 011160 224 S----------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN--DEFIYLFTQD 290 (492)
Q Consensus 224 ~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~--~~~i~~~d~~ 290 (492)
. .+.|.++|+.+++....+.. .....+++|+|+|+ +++++. ++.|.+||..
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~----------------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----------------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCCEEEEEEEC----------------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 2 35799999998876443221 22578899999999 677765 5689999998
Q ss_pred CCCC
Q 011160 291 MGLG 294 (492)
Q Consensus 291 ~~~~ 294 (492)
+++.
T Consensus 350 t~~v 353 (373)
T 2mad_H 350 AGDQ 353 (373)
T ss_pred CCCE
Confidence 8643
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=2.1e-10 Score=105.08 Aligned_cols=316 Identities=10% Similarity=0.044 Sum_probs=179.3
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec-CccceEE-EEEEcCCCCEEEEecCCCeEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVN-TVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~-~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+..+.+++.++.|..+|..+|+.+... .+....... .....+. .+.. ++..|+.++.++.|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~-------------~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSV-------------SLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYA 117 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEE-------------ECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeee-------------cCccccccccccCcccccCceE--eCCEEEEEcCCCEEEE
Confidence 566777778899999999999876220 000000000 0012222 2222 3557777888999999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC---ceEEEEEcCCCCc
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPH 164 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~ 164 (492)
+|..+|+.+.... ........... .+..++.++.++.|..+|..+++............ ........ ++
T Consensus 118 ~d~~tG~~~W~~~-~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-- 189 (376)
T 3q7m_A 118 LNTSDGTVAWQTK-VAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-- 189 (376)
T ss_dssp EETTTCCEEEEEE-CSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT--
T ss_pred EECCCCCEEEEEe-CCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC--
Confidence 9999999876662 22211112222 34467778889999999998887765532221110 00111222 33
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce-EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCC
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 243 (492)
.++.++.++.+..+|..+++.....................+ ...... +..++.++.++.+..+|..+++......
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE---TTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE---CCEEEEEecCcEEEEEECCCCcEEeecc
Confidence 577888899999999999988766543211000000000000 001111 2467777889999999998876442211
Q ss_pred CCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
......+... ++.+++...++.+..+|..+++....
T Consensus 267 -----------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~-------------------------- 302 (376)
T 3q7m_A 267 -----------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWT-------------------------- 302 (376)
T ss_dssp -----------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEE--------------------------
T ss_pred -----------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEe--------------------------
Confidence 1122333332 34444444477899999987632211
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEE-EeecCCCCeEEE
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC-IEPHPHSTVLAS 402 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s 402 (492)
....... .+..... .+..|+.++.+|.|+++|..+|+.+.........+.. ... .+..|+.
T Consensus 303 ------------~~~~~~~-~~~~~~~---~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v 364 (376)
T 3q7m_A 303 ------------QSDLLHR-LLTSPVL---YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLI 364 (376)
T ss_dssp ------------ECTTTTS-CCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEE
T ss_pred ------------ecccCCC-cccCCEE---ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEE
Confidence 1100000 0122222 2457888888999999999999998877654333322 222 2456777
Q ss_pred eeCCCCEEEec
Q 011160 403 SGIESDIKILT 413 (492)
Q Consensus 403 ~~~dg~i~iw~ 413 (492)
++.+|.|..|+
T Consensus 365 ~~~~G~l~~~~ 375 (376)
T 3q7m_A 365 QAKDGTVYSIT 375 (376)
T ss_dssp EBTTSCEEEEE
T ss_pred EeCCCEEEEEe
Confidence 88899999886
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.44 E-value=1.1e-11 Score=111.22 Aligned_cols=268 Identities=7% Similarity=-0.109 Sum_probs=167.5
Q ss_pred eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec----------CCCcEEEEecccCCeeeeEEeecC----
Q 011160 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQILERGGVETKLLGKH---- 149 (492)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~---- 149 (492)
+|.++|..+++.+.++..+.. + .+.++| ++++++++. .++.|.+||+.+.+.+....+.+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 888999999999998865553 4 799999 999999886 368899999999888776443211
Q ss_pred -CCceEEEEEcCCCCcEEEEEcC--CCcEEE--EeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC
Q 011160 150 -QGRAHKLAIEPGSPHVFYTCGE--DGLVQH--FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 150 -~~~v~~i~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (492)
......++++|+|. +++++.. ...+.+ +|+.+ +..+.... ++.+.|++...+++.+.
T Consensus 122 ~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--------------~~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 122 VGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--------------CFHIHPGAAATHYLGSC 183 (368)
T ss_dssp BSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEECSS--------------CCCCEEEETTEEECCCC
T ss_pred cCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEECCC--------------ceEEccCCCeEEEEEcC
Confidence 12456899999996 4555543 467888 99887 33332110 01223444556677778
Q ss_pred CCeEEEEeccc-----ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCC--CC
Q 011160 225 DEYTRLYDIRK-----YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP--NP 297 (492)
Q Consensus 225 dg~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~--~~ 297 (492)
||.+.+.|+.+ ++...... ....-...+. .+...+.++++.. +.+.+.|....... ..
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t-----------~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCT-----------GAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSC-----------TTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred CCCEEEEECccccccCCeEEEEee-----------eeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 88888888876 43221100 0011112232 3333444555555 88999988642110 00
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeec---------cCeEE
Q 011160 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---------CGRIF 368 (492)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~---------dg~i~ 368 (492)
+.... ............ ...+.+ +|+++.++.+.. ++.+.
T Consensus 249 ~~~~~--------------------------~~~~~~~~~p~g----~~~v~~-s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 249 IDGNE--------------------------SGRKADNFRSAG----FQMVAK-LKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp CCSSC--------------------------THHHHTTEEECS----SSCEEE-ETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred EEecc--------------------------ccccccccccCc----ceeeEE-cCCCCEEEEEeccccCcccccCCCEE
Confidence 00000 000000000000 122566 999988876543 23566
Q ss_pred EEecCCCeeeEEEecCCceeEEEeecCCCC-eEEEee-CCCCEEEeccCCCCCCc
Q 011160 369 IWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRAT 421 (492)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~ 421 (492)
++|+.+++.+..+.... ....++|+||++ .+++.. .++.|.++|+.+.+...
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 99999999998886543 589999999998 456666 59999999999987653
No 221
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.44 E-value=1e-11 Score=111.78 Aligned_cols=296 Identities=12% Similarity=0.055 Sum_probs=180.2
Q ss_pred ceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 011160 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (492)
Q Consensus 11 ~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~ 90 (492)
..+.+++.++.|..|| .+|+.. .....+...+.++...+++. |..++.+ |..+|.
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~---------------------~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~ 85 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVK---------------------WFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP 85 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEE---------------------ESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC
T ss_pred CeEEEEcCCCEEEEEC-CCCcEE---------------------EEEecCCCcccceEEecCCc-EEEecCc--EEEECC
Confidence 3466666788899999 778765 22233445667788877775 4455554 888885
Q ss_pred CCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc
Q 011160 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
+++....+ ...........+. +..|+.++.++.|..++.. +..... .......+.++...+++ . ++.++
T Consensus 86 -~g~~~~~~-~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~--~~~~~~~~~~~~~~~~g-~-l~vgt 154 (330)
T 3hxj_A 86 -DGTEKWRF-DTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWR--FKTKKAIYATPIVSEDG-T-IYVGS 154 (330)
T ss_dssp -CGGGGGGS-CC-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEE--EECSSCCCSCCEECTTS-C-EEEEC
T ss_pred -CCcEEEEE-ECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEE--EcCCCceeeeeEEcCCC-E-EEEEc
Confidence 56654443 2222222223332 4457777788999999987 554433 33344456677777777 3 67788
Q ss_pred CCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccc
Q 011160 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (492)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 250 (492)
.++.|..+|.. ++....+... ...+.++...++ +. +..++ +.+..+| .+++......
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~----------~~~~~~~~~d~~-g~-l~v~t--~~l~~~d-~~g~~~~~~~------- 211 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTN----------DAITSAASIGKD-GT-IYFGS--DKVYAIN-PDGTEKWNFY------- 211 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECS----------SCCCSCCEECTT-CC-EEEES--SSEEEEC-TTSCEEEEEC-------
T ss_pred CCCEEEEECCC-CCEeEEEecC----------CCceeeeEEcCC-CE-EEEEe--CEEEEEC-CCCcEEEEEc-------
Confidence 88999999998 7665554421 123556667665 44 44455 7899999 5544221110
Q ss_pred cCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccc
Q 011160 251 FCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (492)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (492)
.....+.++...++|.+.++..++.+..++....
T Consensus 212 --------~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~-------------------------------------- 245 (330)
T 3hxj_A 212 --------AGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT-------------------------------------- 245 (330)
T ss_dssp --------CSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC--------------------------------------
T ss_pred --------cCCcceeceEECCCCeEEEEcCCCeEEEECCCCC--------------------------------------
Confidence 1124467778888887777666778888874321
Q ss_pred cCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEE
Q 011160 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (492)
Q Consensus 331 ~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 410 (492)
....+...... +..+.. .+++ .|..++.+|.|..+|. +++.+..+......+.++...++++++ .++.+|.++
T Consensus 246 -~~~~~~~~~~~--~~~~~~-~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~ 318 (330)
T 3hxj_A 246 -EKWRFKTGKRI--ESSPVI-GNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFY 318 (330)
T ss_dssp -EEEEEECSSCC--CSCCEE-CTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEE
T ss_pred -EeEEeeCCCCc--cccceE-cCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEE
Confidence 11122211111 233444 5566 4556777888999996 788777776555667788887787754 577899999
Q ss_pred EeccCCCC
Q 011160 411 ILTPNAAD 418 (492)
Q Consensus 411 iw~~~~~~ 418 (492)
+...+..+
T Consensus 319 ~~~~~~~~ 326 (330)
T 3hxj_A 319 ALFNLEHH 326 (330)
T ss_dssp EEEC----
T ss_pred EEeccccc
Confidence 88776543
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=9e-11 Score=104.05 Aligned_cols=234 Identities=11% Similarity=0.006 Sum_probs=148.4
Q ss_pred cCcceEEEEecCCCCCc-eEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC
Q 011160 103 HNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (492)
Q Consensus 103 ~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 181 (492)
.........|+| +++ ++++...++.|..|+. ++. .. .+..+...+..+++.++| +++++...++.|.+|+..
T Consensus 43 ~~~~~egp~~~~--~g~~l~~~d~~~~~i~~~~~-~g~-~~--~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWE--AQRTLVWSDLVGRRVLGWRE-DGT-VD--VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEG--GGTEEEEEETTTTEEEEEET-TSC-EE--EEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeC--CCCEEEEEECCCCEEEEEeC-CCC-EE--EEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC
Confidence 444567899999 887 5667777899999987 343 22 244566778999999999 465655566789999986
Q ss_pred CCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEE----ecC-------------CCeEEEEecccccccCCCCC
Q 011160 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV----AGS-------------DEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~----~~~-------------dg~v~i~d~~~~~~~~~~~~ 244 (492)
++......... + .....++.++++|+ +.++++ |.. .+.|..||..+++...
T Consensus 116 -g~~~~~~~~~~-----~-~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~---- 183 (305)
T 3dr2_A 116 -GQAHLLVGRYA-----G-KRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR---- 183 (305)
T ss_dssp -SCEEEEECEET-----T-EECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE----
T ss_pred -CCEEEEEeccC-----C-CccCCCCCEEECCC-CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE----
Confidence 54322211100 0 01234678999998 666665 332 2567777775554211
Q ss_pred CCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C------CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCC
Q 011160 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
+. .......++|+|+++.|+.+. . +.|++|++.... .
T Consensus 184 -----------~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l---------------------- 227 (305)
T 3dr2_A 184 -----------MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L---------------------- 227 (305)
T ss_dssp -----------EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E----------------------
T ss_pred -----------Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c----------------------
Confidence 11 234567899999999776654 3 479999986531 0
Q ss_pred CCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCC
Q 011160 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (492)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 397 (492)
.....+... .......+++ +++|++.++. .+ .|.+|+. .++.+..+..+. .+.+++|+|++
T Consensus 228 -------------~~~~~~~~~-~~~~pdgi~~-d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~ 288 (305)
T 3dr2_A 228 -------------HDRRHFASV-PDGLPDGFCV-DRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQ 288 (305)
T ss_dssp -------------EEEEEEECC-SSSCCCSEEE-CTTSCEEECC-SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTS
T ss_pred -------------cCCeEEEEC-CCCCCCeEEE-CCCCCEEEec-CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCC
Confidence 000011000 0011356777 9999955544 44 4999998 678887777655 58999999999
Q ss_pred CeEEEeeCCCCEE
Q 011160 398 TVLASSGIESDIK 410 (492)
Q Consensus 398 ~~l~s~~~dg~i~ 410 (492)
+.|..++.++..+
T Consensus 289 ~~L~it~~~~l~~ 301 (305)
T 3dr2_A 289 QRLFITGGPCLWM 301 (305)
T ss_dssp CEEEEEETTEEEE
T ss_pred CEEEEEcCCeEEE
Confidence 8887777654333
No 223
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=6e-11 Score=109.32 Aligned_cols=256 Identities=9% Similarity=-0.006 Sum_probs=157.6
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCC-
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR- 83 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~- 83 (492)
.+.++++++++...++.|++||.+++++. ..... ..... ++|+|+++.|+++..++
T Consensus 137 a~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 137 AAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------TVHPG-FKGGK-PAVTKDKQRVYSIGWEGT 193 (409)
T ss_dssp EECSTTEEEEEETTTTEEEEEETTTTEEE---------------------EEEET-CCBCB-CEECTTSSEEEEEBSSTT
T ss_pred EEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------Eeecc-CCCCc-eeEecCCCcEEEEecCCC
Confidence 45688888888888899999999877654 11222 12223 89999999988887765
Q ss_pred -eEEEEECCCCceeeee---ccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEE--eecCCCce--EE
Q 011160 84 -RVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL--LGKHQGRA--HK 155 (492)
Q Consensus 84 -~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~~~v--~~ 155 (492)
.|.+|+...+.....+ .......+.+++++| ++..|+.+..++.|+.|+..++....... ..++...- ..
T Consensus 194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p--~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE--TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT--TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCE
T ss_pred ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC--CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcccc
Confidence 7888887765542222 111445678899998 66667767778899999987665322110 11122222 39
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCC-CCCC-Cc---ceeecceEEEEEcCCCCceEEEec-CCCeEE
Q 011160 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP-IDDR-RN---YMTVVNLNAIAIDPRNANLFAVAG-SDEYTR 229 (492)
Q Consensus 156 i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~-~~---~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~ 229 (492)
++|+|++..++++-...+.|+.|+.... ...+.... .... .+ ...-.....++++|+ ++++++-. .++.|+
T Consensus 272 ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 272 LIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLR 348 (409)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEE
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEE
Confidence 9999965467777778899999997654 22221111 0000 00 001234789999998 66777777 889999
Q ss_pred EEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEec
Q 011160 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (492)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~ 289 (492)
.|++.++........... ..+.........-.....+++++++.++++-. ++.|+.+.+
T Consensus 349 ~~~~~~G~v~~~~g~~~~-~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 349 KLDILDGYVSTVAGQVDV-ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTEEEEEEECTTC-BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEECCCCEEEEEeCCCCC-CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 999766653211000000 00000000011134688999999987777766 457888765
No 224
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=3.6e-12 Score=114.47 Aligned_cols=184 Identities=14% Similarity=0.082 Sum_probs=127.5
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCe
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (492)
+.++...++++|+.++ +++|+++..+-.. . ....+ ++..... .+.+ |+.++| ++++|+++ .++.
T Consensus 44 ais~~~gll~a~~~~~-l~v~~~~~l~~~~---~---~~~~~----~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 44 DISNSKSLFVAASGSK-AVVGELQLLRDHI---T---SDSTP----LTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHHHHH---H---SSSCC----CCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred EEcCCCCEEEEeCCCE-EEEEEhhHhhhhh---c---ccccc----ccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCc
Confidence 4567888899999885 6679987543110 0 00001 2111122 3556 999999 89999999 8899
Q ss_pred EEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCc
Q 011160 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 164 (492)
|++||+.+....... ..|...+.++.+.+ . .++++..||.|.+|++..+.... +...|+|++|+|+|
T Consensus 108 l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG-- 174 (388)
T 1xip_A 108 LYSLDLEELSEFRTV-TSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ-- 174 (388)
T ss_dssp EEEEESSSTTCEEEE-EECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE--
T ss_pred EEEEEchhhhccCcc-ceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc--
Confidence 999999876654444 46777888888876 3 28888999999999998766532 33589999999998
Q ss_pred EEEEEcCCCcEEEEeCCCCCc--cceeecCCCCC-CCcceeecceEEEEEcCCCCceEEE
Q 011160 165 VFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDD-RRNYMTVVNLNAIAIDPRNANLFAV 221 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (492)
++.|..||.+++|+...+.. ...+..++... ..+ +...|.++.|.++ ..++++
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~--~~~~V~sI~wl~~-~~flv~ 230 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPV--EEYSPLSVTILSP-QDFLAV 230 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCT--TTSEEEEEEESSS-SEEEEE
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccC--CCeeEEEEEEecC-CeEEEE
Confidence 57788999999999887774 33443221110 001 3457999999997 566665
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.39 E-value=1.3e-10 Score=103.01 Aligned_cols=235 Identities=9% Similarity=0.013 Sum_probs=147.8
Q ss_pred ecCccceEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
+..+.......+|+|+++ +++++..++.|..|+. +++. ..+ ..+...+..+++.+ +++++++...++.|.+|+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~-~~~~~~~~gl~~d~--dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVL-LDATAFTNGNAVDA--QQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEE-EESCSCEEEEEECT--TSCEEEEETTTTEEEEECT
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEE-eCCCCccceeeECC--CCCEEEEECCCCEEEEECC
Confidence 344455667899999998 6677778899999997 4543 333 34556789999999 9987766666678999997
Q ss_pred ccCCeeeeE-Eeec-CCCceEEEEEcCCCCcEEEE----EcC-------------CCcEEEEeCCCCCccceeecCCCCC
Q 011160 136 LERGGVETK-LLGK-HQGRAHKLAIEPGSPHVFYT----CGE-------------DGLVQHFDLRTGAATELFTCRPIDD 196 (492)
Q Consensus 136 ~~~~~~~~~-~~~~-~~~~v~~i~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (492)
. +...... ...+ ....++.+++.|+| .++++ |.. .+.|..||..+++..... .
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~----- 186 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D----- 186 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-----
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-----
Confidence 5 4322110 0111 12346789999999 46565 332 256788887766644322 1
Q ss_pred CCcceeecceEEEEEcCCCCceEEEecCC------CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc
Q 011160 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (492)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 270 (492)
....+.++|+|+ ++.|+.+... +.|++|++....+..... +..........++++
T Consensus 187 ------~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~------------~~~~~~~~pdgi~~d 247 (305)
T 3dr2_A 187 ------LDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH------------FASVPDGLPDGFCVD 247 (305)
T ss_dssp ------ESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEEEE------------EECCSSSCCCSEEEC
T ss_pred ------CCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE------------EEECCCCCCCeEEEC
Confidence 113578999998 5656555444 789999987543110000 000012234568899
Q ss_pred CCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEe
Q 011160 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (492)
Q Consensus 271 ~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 350 (492)
++|++.++. .+.|.+|+... ..+..+..+.. +.+++|
T Consensus 248 ~~G~lwv~~-~~gv~~~~~~g---------------------------------------~~~~~~~~~~~---~~~~~f 284 (305)
T 3dr2_A 248 RGGWLWSSS-GTGVCVFDSDG---------------------------------------QLLGHIPTPGT---ASNCTF 284 (305)
T ss_dssp TTSCEEECC-SSEEEEECTTS---------------------------------------CEEEEEECSSC---CCEEEE
T ss_pred CCCCEEEec-CCcEEEECCCC---------------------------------------CEEEEEECCCc---eeEEEE
Confidence 999965555 55699998743 22333333332 678888
Q ss_pred ecCCCcEEEEeeccCeE
Q 011160 351 FGPKCEYVVSGSDCGRI 367 (492)
Q Consensus 351 ~s~~g~~l~sg~~dg~i 367 (492)
+|+++.|+.++.++..
T Consensus 285 -~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 285 -DQAQQRLFITGGPCLW 300 (305)
T ss_dssp -CTTSCEEEEEETTEEE
T ss_pred -eCCCCEEEEEcCCeEE
Confidence 8999888887766433
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.39 E-value=1.5e-11 Score=121.98 Aligned_cols=236 Identities=13% Similarity=0.115 Sum_probs=147.1
Q ss_pred CCCCCCCCceEe-----eccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEE
Q 011160 3 DASNNNNNKRAR-----TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (492)
Q Consensus 3 ~~~~~~~~~~l~-----t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 77 (492)
.+.++|||++|| .|+....|++||+++|+.+. ..+. ......++|+ |++.|+
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~--------------------~~~~--~~k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE--------------------TPLK--DVKFSGISWL-GNEGFF 189 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE--------------------EEEE--EEESCCCEEE-TTTEEE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc--------------------cccC--CceeccEEEe-CCCEEE
Confidence 346899999988 45556789999999988651 1111 1112577999 999998
Q ss_pred EecCCC-------------eEEEEECCCCce--eeeec-cC-cCcceEEEEecCCCCCceEEeec----CCCcEEEEecc
Q 011160 78 SGSDDR-------------RVILWDWKTERV--KLSFH-SG-HNDNVFQAKIMPFTDDRSIVTCA----ADGQVRHAQIL 136 (492)
Q Consensus 78 s~~~d~-------------~i~iwd~~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~~----~dg~v~iw~~~ 136 (492)
.++.+. .|++|++.++.. ...+. .. |......+.|+| ++++|+... ....|+++++.
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECC
Confidence 887774 399999987653 12221 22 444578899999 999886433 23589999987
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC---CcEEEEeCCCCCcc--ceeecCCCCCCCcceeecceEEEEE
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
++.... ..+..+....... +++++..+++....+ +.|..+++.++... ..+.. +...+. .|
T Consensus 268 ~~~~~~-~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~----------~~~~~~--~~ 333 (693)
T 3iuj_A 268 QENAPL-LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP----------ERQQVL--TV 333 (693)
T ss_dssp STTCCC-EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC----------CCSSCE--EE
T ss_pred CCCCce-EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec----------CCCCEE--EE
Confidence 764222 1244555555554 666665666665544 67999999887641 22221 111233 77
Q ss_pred cCCCCceEEEecCCC--eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee-cC----CcE
Q 011160 212 DPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-ND----EFI 284 (492)
Q Consensus 212 ~p~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~----~~i 284 (492)
++++..++++...++ .|++|++..+... .+.......+..+.+++++..|+.. ++ ..+
T Consensus 334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~---------------~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDATARVEQFDYEGKRVR---------------EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTSCEEE---------------EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred EEECCEEEEEEEECCeeEEEEEECCCCeeE---------------EeecCCCceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 887444444444555 6888888644311 1111123457777888888765543 33 469
Q ss_pred EEEecCCC
Q 011160 285 YLFTQDMG 292 (492)
Q Consensus 285 ~~~d~~~~ 292 (492)
+.||+.++
T Consensus 399 ~~~d~~~g 406 (693)
T 3iuj_A 399 YRFEPKSG 406 (693)
T ss_dssp EEECTTTC
T ss_pred EEEECCCC
Confidence 99998765
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.35 E-value=4e-10 Score=100.76 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=136.2
Q ss_pred CCCC-CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCe
Q 011160 6 NNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (492)
Q Consensus 6 ~~~~-~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (492)
+.|+ +.++++...++.|.+||..+++.. .+. +...+.+++|+|+|+++++. .+ .
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------~~~-~~~~v~~i~~~~dg~l~v~~-~~-g 110 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKT----------------------VHA-LPFMGSALAKISDSKQLIAS-DD-G 110 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEE----------------------EEE-CSSCEEEEEEEETTEEEEEE-TT-E
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEE----------------------EEE-CCCcceEEEEeCCCeEEEEE-CC-C
Confidence 4454 556777777888999998866532 111 23578999999999877765 33 4
Q ss_pred EEEEECCCCceeeeecc--C-cCcceEEEEecCCCCCceEEeecCC----CcEEEEecccCCeeeeEEeecCCCceEEEE
Q 011160 85 VILWDWKTERVKLSFHS--G-HNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~ 157 (492)
|.+||..+++....... . ....+..+++.| +|+++++...+ +...||.+.++ .... +..+......++
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~g-~~~~--~~~~~~~~~~i~ 185 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAKG-KVTK--LFADISIPNSIC 185 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEETT-EEEE--EEEEESSEEEEE
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeCC-cEEE--eeCCCcccCCeE
Confidence 99999988775322211 1 124688999999 88876654321 23344544433 2222 222334567899
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCC--CC-Ccc--ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEe
Q 011160 158 IEPGSPHVFYTCGEDGLVQHFDLR--TG-AAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (492)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d 232 (492)
|+|++..++++.+.++.|.+|++. ++ ... ..+.... . ....+..++++++ +++.++...++.|..|+
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--~-----~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST--G-----IKGGMDGSVCDAE-GHIWNARWGEGAVDRYD 257 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT--T-----SSSEEEEEEECTT-SCEEEEEETTTEEEEEC
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC--C-----CCCCCCeeEECCC-CCEEEEEeCCCEEEEEC
Confidence 999995455566667899999986 55 321 1111100 0 1124578999998 56666665678899999
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc-CCCCeeEeec
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN 280 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~ 280 (492)
.. ++.... .......+.+++|+ ++++.|+.++
T Consensus 258 ~~-g~~~~~---------------i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 258 TD-GNHIAR---------------YEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TT-CCEEEE---------------EECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CC-CCEEEE---------------EECCCCCcEEEEEecCCCCEEEEEe
Confidence 83 432211 11123468999998 8877664443
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.27 E-value=9.4e-10 Score=108.30 Aligned_cols=330 Identities=11% Similarity=0.089 Sum_probs=180.0
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcc---------e-EEEEecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDN---------V-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
+..|++++.++.|.-+|..+|+.+.++....... + ..+++ .+..|++++.|+.|..+|..+++.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEee
Confidence 5567777778899999999999988773211100 0 11222 35678888889999999999998776
Q ss_pred eEEeecCCCceEEEEEcC---CCCcEEEEEc------CCCcEEEEeCCCCCccceeecCCCCCCCcc-------------
Q 011160 143 TKLLGKHQGRAHKLAIEP---GSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDRRNY------------- 200 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~---~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------- 200 (492)
......+......+..+| ++ .+++++ .+|.|+.||.++++.+..+...+.......
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNG--KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eecCcCCCCCCccccCCcEEECC--EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 543320111111111122 44 344443 368999999999998877653211100000
Q ss_pred --------eeecceEEEEEcCCCCceEEEecCCCe-------------------EEEEecccccccCCCCCCCCccccCC
Q 011160 201 --------MTVVNLNAIAIDPRNANLFAVAGSDEY-------------------TRLYDIRKYKWDGSTDFGQPADYFCP 253 (492)
Q Consensus 201 --------~~~~~v~~~~~~p~~~~~l~~~~~dg~-------------------v~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (492)
........++++|+ ..+++.++.++. |..+|..+++..-.......
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~------ 296 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG------ 296 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT------
T ss_pred CceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc------
Confidence 01111236788887 567888887764 99999999876543221100
Q ss_pred CCcCC-CcccceEEEEEcCCCC---eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCC-CC
Q 011160 254 PNLIG-DEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA-NT 327 (492)
Q Consensus 254 ~~~~~-~~~~~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 327 (492)
.... .............+|+ .++.++ ++.++++|..+++........+.. +....... .+..+...... ..
T Consensus 297 -d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~-~~~pi~~~~~~~~~ 373 (689)
T 1yiq_A 297 -DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMK-TGRPILDEENAAYW 373 (689)
T ss_dssp -CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETT-TTEEEECHHHHCTT
T ss_pred -ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCcc-CCCcccchhhcccc
Confidence 0000 0011122222223554 566666 678999999998765332221110 00000000 00000000000 00
Q ss_pred ccccCCceeeccccceeeeeEEeecCCCcEEEEeec--------------------------------------------
Q 011160 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-------------------------------------------- 363 (492)
Q Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-------------------------------------------- 363 (492)
........+.+......-..++| +|+..++++...
T Consensus 374 ~~~~~~~~~p~~~Gg~~w~~~a~-dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~ 452 (689)
T 1yiq_A 374 KNGKRNLVTPAFWGAHDWQPMSY-NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKS 452 (689)
T ss_dssp TSSSCEEESSCTTCSSCSSCCEE-ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTT
T ss_pred CCCCeeEeCCCcccccCCCcceE-CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCC
Confidence 00000000000000000233565 777666665422
Q ss_pred -cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 364 -CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 364 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+|.|+.||+.+|+.+-.+..+.. +..-.+...+.+++.++.||.|+.||.++++..
T Consensus 453 ~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 453 WSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 48899999999999888765542 333455667888999999999999999998765
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.27 E-value=8.6e-13 Score=120.08 Aligned_cols=186 Identities=12% Similarity=0.013 Sum_probs=106.3
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
++.++++++.||.|+.||..+|+++ .++.. +.+.+..+..++..+++++.|+.|+.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~ 64 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------WTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTL 64 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---------------------EEEEC--CCSCCCC-----CCEEECTTTCCEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------EEecC--CCceecceEcCCCEEEEeCCCCEEEEE
Confidence 5678999999999999999999987 22332 344444555678788888899999999
Q ss_pred ECCCCceeeeeccCcCc-ceEEEEecCCC-CCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEE
Q 011160 89 DWKTERVKLSFHSGHND-NVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 166 (492)
|..+|+.+..+ ..+.. .+. .+|.- .+..+++++.++.|+.||..+++.... +..+. ...++|++ ..+
T Consensus 65 d~~tG~~~w~~-~~~~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~--~~~~~----~~~~~p~~-~~v 133 (369)
T 2hz6_A 65 GSKNNEGLTKL-PFTIPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT--LSSAF----ADSLSPST-SLL 133 (369)
T ss_dssp -----CCSEEC-SCCHHHHHT---TCSCC-----CCCCEEEEEEEEECCC-----------------------------E
T ss_pred ECCCCceeeee-eccCccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEE--ecCCC----cccccccC-CEE
Confidence 99988876665 22211 111 11211 345678888899999999998877654 33222 23456666 477
Q ss_pred EEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC--CceEEEecCCCeEEEEecccccccC
Q 011160 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
++++.++.|+.||.++++.+..+... .....++.++. ...+++++.+|.|+.||.++++...
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYF------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEE------------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred EEEecCCEEEEEECCCCCEEEeEecc------------cccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 88899999999999999877665421 11222333321 1467778899999999999887543
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.26 E-value=6.5e-09 Score=93.60 Aligned_cols=241 Identities=10% Similarity=0.037 Sum_probs=140.8
Q ss_pred CCceEE-eecCCCcEEEEecccC--CeeeeEEee------cC-CCceEEEEEcCCCCcEEEEEcCC------CcEEEEeC
Q 011160 117 DDRSIV-TCAADGQVRHAQILER--GGVETKLLG------KH-QGRAHKLAIEPGSPHVFYTCGED------GLVQHFDL 180 (492)
Q Consensus 117 ~~~~l~-~~~~dg~v~iw~~~~~--~~~~~~~~~------~~-~~~v~~i~~~~~~~~~l~~~~~d------g~i~iwd~ 180 (492)
+.++|+ .+..++.|.++|+.+. +......+. .. ......+.+.|++ +++++..+ |.|.++|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence 666665 4667889999998644 222222231 11 1244567888998 55665554 78999999
Q ss_pred CCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-------------------CCCeEEEEecccccccCC
Q 011160 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------------------SDEYTRLYDIRKYKWDGS 241 (492)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------------------~dg~v~i~d~~~~~~~~~ 241 (492)
++.+.+..+..... ...--+.+-|+|+ ++.+++.. ...+|.+||+.+++....
T Consensus 172 ~T~~v~~~~~~~~~-------~~~~~Yd~~~~p~-~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 172 YSFEPLGKWEIDRG-------DQYLAYDFWWNLP-NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp TTCCEEEECCSBCT-------TCCCCCCEEEETT-TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEccCCC-------CccccceEEECCC-CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 99998877753211 1112345788998 56777763 378999999998765443
Q ss_pred CCCCCCccccCCCCcCCCcccceEEEEE--cCCCCeeEeecC-------CcEEEEecCCCCCCCCCCCCCCCcccccccc
Q 011160 242 TDFGQPADYFCPPNLIGDEQVGITGLAF--SDQSELLVSYND-------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (492)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (492)
+.++ ........+.| +|+++++.+++. ++|.+|..+.+..... . ...+
T Consensus 244 I~vg-------------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~-~---------vIdi 300 (462)
T 2ece_A 244 LTLG-------------EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE-K---------VIEI 300 (462)
T ss_dssp EESC-------------TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE-E---------EEEE
T ss_pred EecC-------------CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE-E---------EEeC
Confidence 2221 01223445555 999987766553 3677666543210000 0 0000
Q ss_pred CCCCCCCCCCCCCCCccccC---CceeeccccceeeeeEEeecCCCcEEEEeec-cCeEEEEecC---CCeeeEEEecCC
Q 011160 313 GSDHTSAASPSTANTDVRIA---PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK---GGELIRVIEADR 385 (492)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~-dg~i~iwd~~---~~~~~~~~~~h~ 385 (492)
. ... ..... ...+.+... ....+.+ ||||++|.++.. .+.|.+||+. +.+++..+....
T Consensus 301 ~----------~~~-v~~~lp~~~~~f~~~~~--~pa~I~l-S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG 366 (462)
T 2ece_A 301 P----------AEP-LEGNLPEILKPFKAVPP--LVTDIDI-SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG 366 (462)
T ss_dssp C----------CEE-CCSSCCGGGGGGTEECC--CCCCEEE-CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT
T ss_pred C----------Ccc-ccccccccccccccCCC--ceeEEEE-CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC
Confidence 0 000 00000 000111011 2567887 999999887664 5899999985 235565554321
Q ss_pred --------------ceeEEEeecCCCCeEEEee
Q 011160 386 --------------HVVNCIEPHPHSTVLASSG 404 (492)
Q Consensus 386 --------------~~v~~~~~s~~~~~l~s~~ 404 (492)
+....++++|||++|+++.
T Consensus 367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1368899999999988887
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=1.2e-08 Score=93.50 Aligned_cols=279 Identities=7% Similarity=-0.029 Sum_probs=162.7
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCc--------CcceEE-EEecCCCCCceEEeecCCCcEEEEecccCCeeee
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGH--------NDNVFQ-AKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~v~~-~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 143 (492)
+..|++++.++.|..+|..+|+.+..+.... ...+.+ +.. ++..+++++.++.|..+|..+++....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 5677788888999999999999876663221 122322 222 456778888899999999998887655
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
..+... ........ ++ .+++++.++.|..+|.++++.+..+....... ........... +..++.++
T Consensus 129 ~~~~~~--~~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-----~~~~~~~~~~~---~~~v~~g~ 195 (376)
T 3q7m_A 129 TKVAGE--ALSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-----SLRGESAPTTA---FGAAVVGG 195 (376)
T ss_dssp EECSSC--CCSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCCCEEE---TTEEEECC
T ss_pred EeCCCc--eEcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-----eecCCCCcEEE---CCEEEEEc
Confidence 333221 11111222 33 57888889999999999998876665321100 00000111222 23677788
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPV 303 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 303 (492)
.++.+..+|..+++.........+........+......++ . .++.+++.+.++.+..+|..+++...
T Consensus 196 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~-~~~~v~~~~~~g~l~~~d~~tG~~~w------- 263 (376)
T 3q7m_A 196 DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----V-VNGVVFALAYNGNLTALDLRSGQIMW------- 263 (376)
T ss_dssp TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E-ETTEEEEECTTSCEEEEETTTCCEEE-------
T ss_pred CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----E-ECCEEEEEecCcEEEEEECCCCcEEe-------
Confidence 89999999998887544322211100000000000000111 1 13444444447789999988753211
Q ss_pred CccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEec
Q 011160 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 383 (492)
.... .. ...+.. ++..|+.++.++.|..+|..+|+.+.....
T Consensus 264 -------------------------------~~~~--~~--~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 264 -------------------------------KREL--GS--VNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp -------------------------------EECC--CC--EEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred -------------------------------eccC--CC--CCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 1110 11 223332 356777788899999999999998776652
Q ss_pred C-CceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 384 D-RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 384 h-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
. ...+..... .+..|+.++.+|.|.++|..+++..
T Consensus 306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 2 222333333 2467888888999999999988754
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=9.3e-11 Score=105.80 Aligned_cols=237 Identities=9% Similarity=0.009 Sum_probs=142.2
Q ss_pred cceEEEEecCCCCCceEEeec--CCCcEEEEecccCCeeeeE-----EeecCCCceEEEEEcCCCCcEEEEEcC-----C
Q 011160 105 DNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETK-----LLGKHQGRAHKLAIEPGSPHVFYTCGE-----D 172 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~~l~~~~~-----d 172 (492)
..+..++++| +++.+++.. .++.++||.+.++. +... ....+-..+..+++.+++ +++++-.. +
T Consensus 17 ~~p~~va~~~--~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTP--DGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECT--TSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSC
T ss_pred CCcceEEECC--CCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCC
Confidence 5789999999 998888854 23436667665332 2210 011244678999999998 45554433 5
Q ss_pred CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec---CCCeEEEEecccccccCCCCCCCCcc
Q 011160 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPAD 249 (492)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~ 249 (492)
+.|.+||+.+++.+..+........ ....+..++++|+++..+++.. .++.|.+||+.+++.....
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~----~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~------- 161 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITL----SNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL------- 161 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSC----TTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC-------
T ss_pred CeEEEEECCCCeEEEEEECChhhcc----cccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe-------
Confidence 7899999999887666654221110 2234688999986555556655 6789999999876532110
Q ss_pred ccCCCCcCCCcccce-EEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC
Q 011160 250 YFCPPNLIGDEQVGI-TGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (492)
Q Consensus 250 ~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (492)
..|.... ....+.++|..+.+.. ++.+..|..
T Consensus 162 --------~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------------------------------- 195 (343)
T 2qe8_A 162 --------QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------------------------------- 195 (343)
T ss_dssp --------TTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--------------------------------------
T ss_pred --------cCCCcccccccceeECCEEEEeccCCCceeceec--------------------------------------
Confidence 0000000 0012223444443332 333332210
Q ss_pred ccccCCceeeccccceeeeeEEeecCCCcEEEEeeccC-eEEEEecC---CCe-----eeE--EEecCCceeEEEeecCC
Q 011160 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKK---GGE-----LIR--VIEADRHVVNCIEPHPH 396 (492)
Q Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg-~i~iwd~~---~~~-----~~~--~~~~h~~~v~~~~~s~~ 396 (492)
.+..+++ +|+|++|+.+...+ .|+.++.. .+. ... ...++.+....++++++
T Consensus 196 ----------------~~~gia~-s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~ 258 (343)
T 2qe8_A 196 ----------------GVNGIVL-DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD 258 (343)
T ss_dssp ----------------CEEEEEE-CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred ----------------ccceeEe-ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence 1578888 99999888877665 55555532 111 000 11233345678999999
Q ss_pred CCeEEEeeCCCCEEEeccCCCCC
Q 011160 397 STVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 397 ~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
|.++++...++.|.+|+..+++.
T Consensus 259 G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 259 HNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CCEEEEEGGGTEEEEEETTTTEE
T ss_pred CCEEEEccCCCeEEEEECCCCCE
Confidence 99999988899999999954543
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.25 E-value=1.5e-08 Score=87.70 Aligned_cols=252 Identities=12% Similarity=0.072 Sum_probs=150.9
Q ss_pred CEEEEecCCCeEEEEECCCCcee----eeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeeeeEEeec
Q 011160 74 DILISGSDDRRVILWDWKTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGK 148 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~ 148 (492)
.+|+.+.. +.|+.+++...... ..+.......+..++|.+ ++..|+ +-...+.|..+++....... ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTT--IIRQ 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEE--EECT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEE--EEEC
Confidence 34555543 47888887654321 111111234578999998 665555 44557899999986544322 1222
Q ss_pred CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC--CC
Q 011160 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--DE 226 (492)
Q Consensus 149 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg 226 (492)
.......+++.|++..++++-...+.|.++++........... .......++++|+++.++++... .+
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~----------~~~~P~~i~vd~~~g~lyv~~~~~~~~ 146 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT----------GLVNPRGIVTDPVRGNLYWTDWNRDNP 146 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC----------CCCCccEEEEeeCCCEEEEEECCCCCc
Confidence 2346789999997656666667778999999875432221110 11245789999974555555433 46
Q ss_pred eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCC
Q 011160 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVS 304 (492)
Q Consensus 227 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~ 304 (492)
.|..+++...... .+..........++++|++..|..+. .+.|.+++....
T Consensus 147 ~I~~~~~dg~~~~---------------~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~------------ 199 (267)
T 1npe_A 147 KIETSHMDGTNRR---------------ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP------------ 199 (267)
T ss_dssp EEEEEETTSCCCE---------------EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE------------
T ss_pred EEEEEecCCCCcE---------------EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC------------
Confidence 7888887532110 00001123578899999877665555 457999998642
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecC
Q 011160 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (492)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 384 (492)
.....+.+... ...++. . .+.++++....+.|.+++..+++.+..+...
T Consensus 200 --------------------------~~~~~~~~~~~---P~gi~~-d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 200 --------------------------GRRKVLEGLQY---PFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp --------------------------EEEEEEECCCS---EEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred --------------------------ceEEEecCCCC---ceEEEE-e-CCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence 11111111111 245555 4 3445555556689999999999999888644
Q ss_pred C-ceeEEEeecCCCC
Q 011160 385 R-HVVNCIEPHPHST 398 (492)
Q Consensus 385 ~-~~v~~~~~s~~~~ 398 (492)
. .....+++.|++.
T Consensus 249 ~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 249 KQTRLYGITIALSQC 263 (267)
T ss_dssp SCCCCCCEEEECSCC
T ss_pred cccccceeeecCccC
Confidence 3 2467888888764
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.25 E-value=2e-09 Score=100.38 Aligned_cols=257 Identities=9% Similarity=-0.014 Sum_probs=150.7
Q ss_pred CCceEEeec-CCCcEEEEecccCCeeeeEEeecCCCceEEEEE-c-CCCCcEEEEEc------------------CCCcE
Q 011160 117 DDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAI-E-PGSPHVFYTCG------------------EDGLV 175 (492)
Q Consensus 117 ~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~-~-~~~~~~l~~~~------------------~dg~i 175 (492)
||++|+... .++.|.+.|+.+.+......+. ....+..+++ + |++.+ +++++ .++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~-v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNY-VFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSE-EEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcE-EEEecccccccCCCCcccccccccCceE
Confidence 567777655 4567999999998876653343 2245778887 5 88864 45552 34689
Q ss_pred EEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC---------------eEEEEeccccccc-
Q 011160 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE---------------YTRLYDIRKYKWD- 239 (492)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------------~v~i~d~~~~~~~- 239 (492)
.++|..+.+....+.... ....++++|+ ++++++.+.+. .|.+++.......
T Consensus 178 tvID~~t~~v~~qI~Vgg-----------~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-----------NLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp EEEETTTTEEEEEEEESS-----------CCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred EEEECCCCeEEEEEEeCC-----------CccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 999999988777665321 2345778998 56666665442 3444444322100
Q ss_pred --CCCC-CCC-C-cccc----CC-CCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCC--CCCCCCCCc
Q 011160 240 --GSTD-FGQ-P-ADYF----CP-PNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPN--PPPSSPVST 305 (492)
Q Consensus 240 --~~~~-~~~-~-~~~~----~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~--~~~~~~~~~ 305 (492)
.... .+. + +... .. ..... -.....++.++|||+++++++ .++|.++|+.+.+... .+.
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~------ 318 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD------ 318 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC------
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC------
Confidence 0000 000 0 0000 00 00000 123456799999999988877 5589999998531000 000
Q ss_pred cccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC----------C
Q 011160 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG----------G 375 (492)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~----------~ 375 (492)
........+..-.. ...++| +|+|...++.-.|+.|.+||+.+ .
T Consensus 319 ----------------------~~~~v~~~v~vG~g---P~h~aF-~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 319 ----------------------PRSAVVAEPELGLG---PLHTAF-DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp ----------------------GGGGEEECCBCCSC---EEEEEE-CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred ----------------------cccceEEEcCCCCC---cceEEE-CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 00001111111122 467888 99995455667799999999977 5
Q ss_pred eeeEEEecCCcee-----EEEeecCCCCeEEEeeC---CCCE----------EEeccCCCCCC
Q 011160 376 ELIRVIEADRHVV-----NCIEPHPHSTVLASSGI---ESDI----------KILTPNAADRA 420 (492)
Q Consensus 376 ~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~~~---dg~i----------~iw~~~~~~~~ 420 (492)
+.+..+..|..+- ..+..+|||++|+++.. |+-+ .++|+.+++..
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 6677787765431 23466899999998854 3321 88999666544
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=2.4e-09 Score=105.16 Aligned_cols=324 Identities=10% Similarity=0.055 Sum_probs=182.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCc----------ceEEEEecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHND----------NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
+..|++++.++.|.-+|..+|+.+.++...... ....+++ .+..|++++.|+.|..+|..+++.+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 456666777889999999999988777322110 0112333 45678888889999999999998876
Q ss_pred eEEee-cCC--CceEE-EEEcCCCCcEEEEEcC------CCcEEEEeCCCCCccceeecCCCCC---------------C
Q 011160 143 TKLLG-KHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDD---------------R 197 (492)
Q Consensus 143 ~~~~~-~~~--~~v~~-i~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------~ 197 (492)
..... ... ..+.+ ..+ .++ .+++++. ++.|+.+|.++++.+..+....... .
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v-~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV-FKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE-ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eecCCcCcCcCcccccCcEE-ECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 53332 100 11111 111 133 3455543 6899999999999887765432211 0
Q ss_pred C--c--c---eeecceEEEEEcCCCCceEEEecCCC-------------------eEEEEecccccccCCCCCCCCcccc
Q 011160 198 R--N--Y---MTVVNLNAIAIDPRNANLFAVAGSDE-------------------YTRLYDIRKYKWDGSTDFGQPADYF 251 (492)
Q Consensus 198 ~--~--~---~~~~~v~~~~~~p~~~~~l~~~~~dg-------------------~v~i~d~~~~~~~~~~~~~~~~~~~ 251 (492)
. + . ........++++|+ ..+++.++.++ .|..+|..+++............
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~-- 306 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN-- 306 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC--
T ss_pred cccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc--
Confidence 0 0 0 01112246788887 56777776654 49999999887654432211000
Q ss_pred CCCCcCCCcccceEEEEEcCCC---CeeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC
Q 011160 252 CPPNLIGDEQVGITGLAFSDQS---ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (492)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (492)
.. .. ......-+....+| ..++.++ ++.++++|..+++....+...+.... . .+...++.+.......
T Consensus 307 --wd-~~-~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~-~--~~d~~g~~~~~~~~~~- 378 (677)
T 1kb0_A 307 --WD-YT-STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-S--GYDKHGKPIGIAAARD- 378 (677)
T ss_dssp --SC-CC-CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-E--EECTTSCEEECGGGGC-
T ss_pred --cc-cc-cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc-c--ccCCCCceeeccccCc-
Confidence 00 00 01112223333466 5666666 67899999999876544332221100 0 0000000000000000
Q ss_pred ccccCCce---eeccccceeeeeEEeecCCCcEEEEeec-----------------------------------------
Q 011160 328 DVRIAPQV---YKGHRNCVTVKGVNFFGPKCEYVVSGSD----------------------------------------- 363 (492)
Q Consensus 328 ~~~~~~~~---~~~~~~~~~v~~~~~~s~~g~~l~sg~~----------------------------------------- 363 (492)
....... ..+..+ -..++| +|++.++++...
T Consensus 379 -~~~~~~~~P~~~G~~~---w~~~a~-dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 453 (677)
T 1kb0_A 379 -GSKPQDAVPGPYGAHN---WHPMSF-NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS 453 (677)
T ss_dssp -TTSCEECSSCTTCSSC---SSCCEE-ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred -CCCccEECcCcccccC---CCCceE-cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCC
Confidence 0000000 111111 135666 888877776543
Q ss_pred --cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 364 --CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 364 --dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
.|.|..||+.+++.+-.+.. ..++....+..++.+++.++.||.+++||..+++..
T Consensus 454 ~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 454 KPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp CCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 27899999999998877763 334455556677888888999999999999998764
No 236
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.21 E-value=7.8e-08 Score=97.16 Aligned_cols=299 Identities=10% Similarity=0.088 Sum_probs=177.6
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeee
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 143 (492)
|.++...+++.+.+ ++.++-|..|+..+++........+...|.++...+ ++.+.+ ++.++-|.+|+..++.....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQS--PTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEE--TTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC--CCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 88888888886555 555445888998776653322122345788888876 666544 44444488898766443221
Q ss_pred EEee------cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 144 KLLG------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 144 ~~~~------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
... -....|.++...+++. |..|+.+ -|.+|+..++....... .... ........|.++...++ +
T Consensus 251 -~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~-~~~~--~~~l~~~~i~~i~~D~~-g- 321 (795)
T 4a2l_A 251 -LHSPSNPKSISSNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSS-NPVE--NGSLSQRSVRSIFMDSQ-G- 321 (795)
T ss_dssp -CCCTTCTTSCSCSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECC-CTTS--TTSCSSSCEEEEEECTT-S-
T ss_pred -ecCCCCccccCCCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEec-CCCC--CCCCCCCcEEEEEEeCC-c-
Confidence 111 1235699999988883 4555555 58899987765432211 1000 00113346899999987 3
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCC
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP 297 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~ 297 (492)
.|..|+.++-|..|+..+........ ......-....|.++...++|.+.+...++.|..|+..++.....
T Consensus 322 ~lWigt~~~Gl~~~~~~~~~~~~~~~---------~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~ 392 (795)
T 4a2l_A 322 GMWLGTYFGGLNYYHPIRNRFKNIRN---------IPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSY 392 (795)
T ss_dssp CEEEEESSSCEEEECGGGGSSEEECC---------CTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEE
T ss_pred CEEEEECCCCeEEeCCCcccceEEcC---------CCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEE
Confidence 45567777789999876653211000 000001124569999999999877766667899998765321000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec-cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCe
Q 011160 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (492)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~ 376 (492)
.....-.. .-....|.++.. +++|++|..|+.++-|.+|+..+++
T Consensus 393 ---------------------------------~~~~~~~~~~l~~~~v~~i~~-d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 393 ---------------------------------TLQEDESARGIGSNNIKAVYV-DEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp ---------------------------------CCC------CCSCSCEEEEEE-ETTTTEEEEEETTTEEEEEETTTCC
T ss_pred ---------------------------------ecCCCCcccCCCCccEEEEEE-cCCCCEEEEEeCcCceeEEeCCCCc
Confidence 00000000 000113788887 8888856667777779999988776
Q ss_pred eeEEEe----cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 377 LIRVIE----ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 377 ~~~~~~----~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
...... .+...|.++...+++++.+... +.|.+|+..+++..
T Consensus 439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFT 484 (795)
T ss_dssp EEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEE
T ss_pred EEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEE
Confidence 433221 1235699999988888666553 45888988776543
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.20 E-value=4.9e-09 Score=94.38 Aligned_cols=251 Identities=12% Similarity=0.063 Sum_probs=145.7
Q ss_pred CCCce-EeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeec------C-ccceEEEEEEcCCCCEEEEe
Q 011160 8 NNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD------K-HRGCVNTVSFNTDGDILISG 79 (492)
Q Consensus 8 ~~~~~-l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~~~~s~~~~~l~s~ 79 (492)
.++++ +++|..++.|.++|+.+.... .++.++++ . ....-..+..+|+| +++++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-----------------p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~ 154 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE-----------------PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISA 154 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS-----------------CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC-----------------ceeeeeechhhcccccCCCcccceeECCCe-EEEEc
Confidence 56666 566778899999998754111 11223331 0 11244677888999 66666
Q ss_pred cCC------CeEEEEECCCCceeeeeccCcC--cceEEEEecCCCCCceEEeec-------------------CCCcEEE
Q 011160 80 SDD------RRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCA-------------------ADGQVRH 132 (492)
Q Consensus 80 ~~d------~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~-------------------~dg~v~i 132 (492)
..+ |.|.+.|..+++.+.++..+-. .--+.+.|+| +++.+++.. ...+|.+
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC--CCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 554 7899999999999888843311 2245688899 999888874 3689999
Q ss_pred EecccCCeeeeEEeecCCCceEEEEE--cCCCCcEEEEEc-----CCCcEEEEeCCCCCccc--eeecCCCC---CC---
Q 011160 133 AQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCG-----EDGLVQHFDLRTGAATE--LFTCRPID---DR--- 197 (492)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~--~~~~~~~~---~~--- 197 (492)
||+.+++.+....+.........+.| +|+++..++++- .+++|.+|....+.... .+...... ..
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 99988655554333212223445655 999965555555 67788887766543211 11111100 00
Q ss_pred -Cccee-ecceEEEEEcCCCCceEEEecCCCeEEEEecccc---cccCCCCCCCCccccCCCCcC-CCcccceEEEEEcC
Q 011160 198 -RNYMT-VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY---KWDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSD 271 (492)
Q Consensus 198 -~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~ 271 (492)
.++.. ......|.++|++..+.++.-..+.|.+||+... ++......+..... +.... ..-...-..++++|
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~--~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR--ADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC--BCCTTSCCCCSCCCCEEECT
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc--ccccccccCCCCCCEEEEcC
Confidence 00000 2346789999995444445556789999998632 22222111100000 00000 00012357789999
Q ss_pred CCCeeEeec
Q 011160 272 QSELLVSYN 280 (492)
Q Consensus 272 ~~~~l~~~~ 280 (492)
+|++|+++.
T Consensus 391 DGk~LyVaN 399 (462)
T 2ece_A 391 DGRRVYVTN 399 (462)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEEc
Confidence 999988776
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=6.7e-09 Score=101.97 Aligned_cols=213 Identities=15% Similarity=0.071 Sum_probs=120.6
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCcc-ceE-EEEEEcCCCCEEEEecCCCeEEE
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+..+.+++.++.|..+|..+|+.+-+..... ... ....+. ..+ ..+++ .+..|+.++.|+.|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~---~~~---------~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~a 131 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEV---AKV---------KARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIA 131 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCC---CGG---------GGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCC---Ccc---------ccccccccCCccceEE--ECCEEEEEcCCCEEEE
Confidence 4456666678899999999998773210000 000 000000 000 11222 2457888888999999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCC-CCceEEeecC------CCcEEEEecccCCeeeeEEeec-C----------
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAA------DGQVRHAQILERGGVETKLLGK-H---------- 149 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~-~---------- 149 (492)
+|..+|+.+.++..........+..+|.- ++ .++++.. +|.|..+|..+++.+....... .
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 99999998877733211111111111100 34 4444432 5899999999988766533211 0
Q ss_pred ------------------CCceEEEEEcCCCCcEEEEEcCCC-------------------cEEEEeCCCCCccceeecC
Q 011160 150 ------------------QGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFTCR 192 (492)
Q Consensus 150 ------------------~~~v~~i~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~ 192 (492)
......+++.|.. .+++.++.++ .|..+|.++++.+..++..
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~ 289 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT 289 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence 0111246788877 4677777665 4999999999988777643
Q ss_pred CCCCCCcceeecceEEEEEcCCCCc---eEEEecCCCeEEEEecccccccC
Q 011160 193 PIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~~~~dg~v~i~d~~~~~~~~ 240 (492)
....... ....+.....+..+ +. .++.++.+|.++++|..+++.+.
T Consensus 290 ~~~~wd~-~~~~~~~~~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 290 PGDSWDF-TATQQITLAELNID-GKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp TTCCSCC-CCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCccccc-cCCCCcEEEEeccC-CcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 2111100 00112222222223 33 68899999999999999998763
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=5.6e-11 Score=108.10 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=76.5
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC
Q 011160 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (492)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 151 (492)
++..|++++.|+.|+.||..+|+.+.++. . ..+.+..+.. ++..+++++.||.|+.||..+++.... +..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEE--CSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCceeee--eeccCc
Confidence 57789999999999999999999988773 3 4555555555 777888888999999999988776543 221111
Q ss_pred -ceE-EEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEE
Q 011160 152 -RAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (492)
Q Consensus 152 -~v~-~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 229 (492)
.+. +..+. .+ ..+++++.++.|+.||.++++.+..+.... ...++|+ +..+++++.++.|+
T Consensus 81 ~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--------------~~~~~p~-~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 81 ELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--------------ADSLSPS-TSLLYLGRTEYTIT 143 (369)
T ss_dssp HHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------------EEEEEEEEEEE
T ss_pred cccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC--------------ccccccc-CCEEEEEecCCEEE
Confidence 110 00111 23 356778888999999999998776554211 1234454 56777777788888
Q ss_pred EEeccccc
Q 011160 230 LYDIRKYK 237 (492)
Q Consensus 230 i~d~~~~~ 237 (492)
.||.++++
T Consensus 144 a~d~~tG~ 151 (369)
T 2hz6_A 144 MYDTKTRE 151 (369)
T ss_dssp CCCSSSSS
T ss_pred EEECCCCC
Confidence 88887764
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.12 E-value=3e-08 Score=83.90 Aligned_cols=204 Identities=10% Similarity=0.042 Sum_probs=137.0
Q ss_pred CCCCCCceEeeccC--cceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC
Q 011160 5 SNNNNNKRARTSVD--KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (492)
Q Consensus 5 ~~~~~~~~l~t~~~--dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (492)
.+++++.++++.+. ++.|++.|+.+|+++.. ..+..+... ..+++.. +++.++.-.+
T Consensus 27 ~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-------------------i~l~~~~fg-eGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 27 VYAENDTLFESTGLYGRSSVRQVALQTGKVENI-------------------HKMDDSYFG-EGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EECSTTEEEEEECSTTTCEEEEEETTTCCEEEE-------------------EECCTTCCE-EEEEEET-TEEEEEETTC
T ss_pred EEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE-------------------EecCCCcce-EEEEEeC-CEEEEEEecC
Confidence 45677766666543 68999999999998732 112222211 2455542 3444555568
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC---ceEEEEEc
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIE 159 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~i~~~ 159 (492)
+.+.++|..+.+.+.++..+ ... ...+++ ++..|+++..++.|.++|..+.+.........+.. .++.+.|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~--g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKD--GWGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSS--CCEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECC-CCC--eEEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 89999999999988888434 122 233555 78888877778999999998877666544443322 36678888
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCC---CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccc
Q 011160 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
++ .+++....++.|.+.|..+++.+..+....... ..........+.++|+|++..+++++...+.+...++...
T Consensus 161 -dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 -NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 66 566666678899999999999888776431100 0000011356899999997778888888999999998764
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.11 E-value=1.3e-06 Score=88.39 Aligned_cols=297 Identities=7% Similarity=0.035 Sum_probs=179.5
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc------CcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
...|.++...++|.+.+. +.+| |.+|+..++....-... -....|.++...+ +|. |..|+.++-|..|+
T Consensus 262 ~~~i~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--~g~-lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIG-TFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS--QGG-MWLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEEE-ESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT--TSC-EEEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEEE-eCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC--CcC-EEEEECCCCeEEeC
Confidence 457999999988875554 4444 88899877654322110 1235799998887 665 55677777788898
Q ss_pred cccCCeeeeEEee----cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 135 ILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 135 ~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
............. -....|.++...+++. |..|+.++-|..|+..++........... . ........|.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~v~~i~ 412 (795)
T 4a2l_A 337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDE-S-ARGIGSNNIKAVY 412 (795)
T ss_dssp GGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC--------CCSCSCEEEEE
T ss_pred CCcccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCC-c-ccCCCCccEEEEE
Confidence 7654322110000 1235689999888873 57788887899999887654322111000 0 0000234688998
Q ss_pred EcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
..++ +.+|..|+.++-|..||..+++..... .. ........|.++...++|.+.++.. +.+.+|+..
T Consensus 413 ~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~~~----------~~-~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 413 VDEK-KSLVYIGTHAGGLSILHRNSGQVENFN----------QR-NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPE 479 (795)
T ss_dssp EETT-TTEEEEEETTTEEEEEETTTCCEEEEC----------TT-TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETT
T ss_pred EcCC-CCEEEEEeCcCceeEEeCCCCcEEEee----------cC-CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCC
Confidence 8876 553666777777999998876432110 00 0001245789999999998776665 679999976
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEE
Q 011160 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iw 370 (492)
++....... ......+ .. ..|.++.. +++|++.+... +-|..|
T Consensus 480 ~~~~~~~~~------------------------------~~~~~~~--~~--~~i~~i~~-d~~g~lWigt~--~Gl~~~ 522 (795)
T 4a2l_A 480 QRSFTTIEK------------------------------EKDGTPV--VS--KQITTLFR-DSHKRLWIGGE--EGLSVF 522 (795)
T ss_dssp TTEEEECCB------------------------------CTTCCBC--CC--CCEEEEEE-CTTCCEEEEES--SCEEEE
T ss_pred CCeEEEccc------------------------------ccccccc--CC--ceEEEEEE-CCCCCEEEEeC--CceEEE
Confidence 532100000 0000000 11 12778877 88888666544 458889
Q ss_pred ecCCCeeeEEEe-------cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 371 KKKGGELIRVIE-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 371 d~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+..+++. .+. .....|.++...++|.+.++.. . .|..|+..+++..
T Consensus 523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 523 KQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp EEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE
T ss_pred eCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE
Confidence 9877765 332 1234689999999998666543 3 6888887765443
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=3e-09 Score=95.51 Aligned_cols=260 Identities=11% Similarity=0.097 Sum_probs=153.7
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEE
Q 011160 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 145 (492)
++.+..++. |..++.++.|..|| .+++....+ ......+.++...+ ++. |+.++.+ |..+|. +++....
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~--~g~-l~v~t~~--l~~~d~-~g~~~~~-- 92 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGK--DGT-IYFGSDK--VYAINP-DGTEKWR-- 92 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETT--TTE-ECCSSCE--EEEECC-CGGGGGG--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEec--CCc-EEEecCc--EEEECC-CCcEEEE--
Confidence 445555564 66677788899999 888876554 33344556677765 554 5555544 888885 4443322
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC
Q 011160 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 146 ~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
+...........+. ++ .++.++.++.|..+|.. ++........ ...+.++...++ + .++.++.+
T Consensus 93 ~~~~~~~~~~~~~~-~~--~l~v~t~~~~l~~~d~~-g~~~~~~~~~----------~~~~~~~~~~~~-g-~l~vgt~~ 156 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF-ED--ILYVTSMDGHLYAINTD-GTEKWRFKTK----------KAIYATPIVSED-G-TIYVGSND 156 (330)
T ss_dssp SCC-----CCEEEE-TT--EEEEECTTSEEEEECTT-SCEEEEEECS----------SCCCSCCEECTT-S-CEEEECTT
T ss_pred EECCCCcccCceEE-CC--EEEEEecCCEEEEEcCC-CCEEEEEcCC----------CceeeeeEEcCC-C-EEEEEcCC
Confidence 11111222223333 43 57788888999999988 6655444321 112455566665 3 46667788
Q ss_pred CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCc
Q 011160 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (492)
Q Consensus 226 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 305 (492)
+.|..+|.. ++....... ....+.++...+++.++++. +.+..++ .++..
T Consensus 157 ~~l~~~d~~-g~~~~~~~~---------------~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~----------- 206 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKT---------------NDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTE----------- 206 (330)
T ss_dssp SEEEEECTT-SCEEEEEEC---------------SSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCE-----------
T ss_pred CEEEEECCC-CCEeEEEec---------------CCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE-----------
Confidence 999999987 543221111 12245556677777766555 8899998 44311
Q ss_pred cccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCC
Q 011160 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (492)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 385 (492)
...+..... .+.++.. +++|.+. .++.++.|..++. +++.+..+....
T Consensus 207 ---------------------------~~~~~~~~~--~~~~~~~-~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~ 254 (330)
T 3hxj_A 207 ---------------------------KWNFYAGYW--TVTRPAI-SEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGK 254 (330)
T ss_dssp ---------------------------EEEECCSSC--CCSCCEE-CTTSCEE-EEETTTEEEEECT-TSCEEEEEECSS
T ss_pred ---------------------------EEEEccCCc--ceeceEE-CCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCC
Confidence 111111112 2567776 7777544 4566778888874 677666666554
Q ss_pred ceeEEEeecCCCCeEEEeeCCCCEEEeccC
Q 011160 386 HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (492)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (492)
..+..+...+++. |..++.+|.|..++..
T Consensus 255 ~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 255 RIESSPVIGNTDT-IYFGSYDGHLYAINPD 283 (330)
T ss_dssp CCCSCCEECTTSC-EEEECTTCEEEEECTT
T ss_pred CccccceEcCCCe-EEEecCCCCEEEECCC
Confidence 4455566665665 5556678889999863
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.06 E-value=7.7e-08 Score=92.33 Aligned_cols=215 Identities=10% Similarity=0.022 Sum_probs=118.2
Q ss_pred ceEeeccC-cceEEEEee-ccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCE----EEEecCCCe
Q 011160 11 KRARTSVD-KALVDVWLR-ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI----LISGSDDRR 84 (492)
Q Consensus 11 ~~l~t~~~-dg~v~~w~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~~d~~ 84 (492)
.++.+++. ++.|.-+|. .+|+.+-+...... ... ......+ .....++++|.+.. |+.++.|+.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~---~~~------~~~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~ 132 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQN---PAA------RAVACCD-LVNRGLAYWPGDGKTPALILKTQLDGN 132 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCC---GGG------GGGCSSC-SCCCCCEEECCCSSSCCEEEEECTTSE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCC---ccc------ccccccc-ccccceEEEecCCcceeEEEEEcCCCE
Confidence 44555665 788888998 88887632100000 000 0000000 00112445443444 788888999
Q ss_pred EEEEECCCCceeeeeccCc-C--cceEE-EEecCCCCCceEEeec------CCCcEEEEecccCCeeeeEEeecCCC---
Q 011160 85 VILWDWKTERVKLSFHSGH-N--DNVFQ-AKIMPFTDDRSIVTCA------ADGQVRHAQILERGGVETKLLGKHQG--- 151 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~-~--~~v~~-~~~~~~~~~~~l~~~~------~dg~v~iw~~~~~~~~~~~~~~~~~~--- 151 (492)
|.-+|..+|+.+.+..... . ..+.+ .... ++. +++++ .+|.|+-+|..+++.+-.........
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~---~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 133 VAALNAETGETVWKVENSDIKVGSTLTIAPYVV---KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred EEEEECCCCCEEEeecCCCCCccceeecCCEEE---CCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 9999999999877652211 0 01111 1111 444 44444 37899999999988765432221100
Q ss_pred --------------------------------ce-EEEEEcCCCCcEEEEEcCC----------------CcEEEEeCCC
Q 011160 152 --------------------------------RA-HKLAIEPGSPHVFYTCGED----------------GLVQHFDLRT 182 (492)
Q Consensus 152 --------------------------------~v-~~i~~~~~~~~~l~~~~~d----------------g~i~iwd~~~ 182 (492)
.+ ..+++.+.. .+++.+..+ +.|..+|.++
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T 287 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT 287 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCC
Confidence 00 134555666 356666554 3799999999
Q ss_pred CCccceeecCCCCCCCcceeecceEEEEEc-CCCC---ceEEEecCCCeEEEEecccccccCCC
Q 011160 183 GAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA---NLFAVAGSDEYTRLYDIRKYKWDGST 242 (492)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~---~~l~~~~~dg~v~i~d~~~~~~~~~~ 242 (492)
++....++..............++. +... .+ + ..++.++.+|.++++|.++++.+...
T Consensus 288 G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 288 GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD-GKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT-SCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CceeeEeecCCCccccccCCCccEE-EeccccC-CcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 9988777653321110000111111 2222 33 4 56777899999999999998876543
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.06 E-value=3.1e-09 Score=99.22 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=152.3
Q ss_pred CCCceEeec-cCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEE-c-CCCCEEEEec----
Q 011160 8 NNNKRARTS-VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF-N-TDGDILISGS---- 80 (492)
Q Consensus 8 ~~~~~l~t~-~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s-~~~~~l~s~~---- 80 (492)
+||++|.+. ..++.|.+.|+.+.++.. .+ .+. .......+++ + |+++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~------------------ii-~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDA------------------IL-EIP-NAKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEE------------------EE-ECS-SCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEee------------------EE-eCC-CCCCCcceeeeecCCCcEEEEeccccc
Confidence 356665554 445679999998777551 11 222 2234678888 5 8999988884
Q ss_pred --------------CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC------------------
Q 011160 81 --------------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG------------------ 128 (492)
Q Consensus 81 --------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------------------ 128 (492)
.++.+.+.|.++.+...++.-+. ....++++| +++++++.+.+.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECC--CCCEEEEEecCcccCcchhhccccccceEE
Confidence 34679999999998888874332 456678899 899988877542
Q ss_pred --------------------cEEEEeccc--CCe-eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc
Q 011160 129 --------------------QVRHAQILE--RGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA 185 (492)
Q Consensus 129 --------------------~v~iw~~~~--~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 185 (492)
.|.+.|..+ +.. +.. +. -.....++.++|||.++++++..+.+|.++|+.+.+.
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~--Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY--IP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE--EE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEE--Ee-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence 356666655 222 111 21 1134568999999987777777889999999986531
Q ss_pred c--------ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccccccc--CCCCCCCCccccCCCC
Q 011160 186 T--------ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD--GSTDFGQPADYFCPPN 255 (492)
Q Consensus 186 ~--------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~ 255 (492)
. ........ -......++|+|++ ...++.-.++.|..|++...... +... . +.-......
T Consensus 312 ~~~~~l~~~~~v~~~v~-------vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~-~vi~kidV~ 381 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPE-------LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-D-PIKDKLDVH 381 (595)
T ss_dssp HHHSCCCGGGGEEECCB-------CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-C-CEEEEEECS
T ss_pred ccccccCcccceEEEcC-------CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc-c-eeEEEeecc
Confidence 1 00000000 23357889999984 66677889999999999772100 0000 0 000000001
Q ss_pred cCCCcccceEEEEEcCCCCeeEeecC---CcE-----------EEEecCCCC
Q 011160 256 LIGDEQVGITGLAFSDQSELLVSYND---EFI-----------YLFTQDMGL 293 (492)
Q Consensus 256 ~~~~~~~~i~~~~~s~~~~~l~~~~~---~~i-----------~~~d~~~~~ 293 (492)
...+|...-.++.++|||++|++... +.+ .++|+..++
T Consensus 382 yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 382 YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 11111111123356799999998763 455 899996543
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=2.2e-07 Score=78.59 Aligned_cols=224 Identities=6% Similarity=-0.011 Sum_probs=140.0
Q ss_pred eeeeeEeecCccc--eEEEEEEcCCCCEEEEecC--CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec
Q 011160 50 RLGIYAKLDKHRG--CVNTVSFNTDGDILISGSD--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (492)
Q Consensus 50 ~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 125 (492)
..+...++. |.. ....++|+|++.+.++.+. ++.|.+.|+.+++.+..+..+.......+++. ++...++.-
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~ 83 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEe
Confidence 344555553 443 4689999998765555543 57999999999998887732222233345554 234445555
Q ss_pred CCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecc
Q 011160 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (492)
Q Consensus 126 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (492)
.++.+.++|..+.+.+...... ... ...+++++..+++ +..++.|.++|..+.+....+....... .-..
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g--~~~--g~glt~Dg~~l~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~-----p~~~ 153 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ--MKD--GWGLATDGKILYG-SDGTSILYEIDPHTFKLIKKHNVKYNGH-----RVIR 153 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC--SSS--CCEEEECSSSEEE-ECSSSEEEEECTTTCCEEEEEECEETTE-----ECCC
T ss_pred cCCEEEEEECCCCcEEEEEECC--CCC--eEEEEECCCEEEE-ECCCCeEEEEECCCCcEEEEEEECCCCc-----cccc
Confidence 7899999999887776653333 111 2335567755554 4568899999999988877765421100 1113
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCc
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEF 283 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~ 283 (492)
++.+.|. + +.+++....++.|.+.|..+++......++...... ...........+.++|+|+++.|++++ .++
T Consensus 154 ~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~--~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 154 LNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL--IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH--HHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred ceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc--ccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 5677887 4 566666667889999999998876554331000000 000001124678999999987665555 557
Q ss_pred EEEEecCC
Q 011160 284 IYLFTQDM 291 (492)
Q Consensus 284 i~~~d~~~ 291 (492)
++..++..
T Consensus 230 v~~i~l~~ 237 (266)
T 2iwa_A 230 LFEIKLHL 237 (266)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 88888765
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.04 E-value=3e-08 Score=95.32 Aligned_cols=164 Identities=12% Similarity=0.062 Sum_probs=95.5
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCc-Cc--ceEE-EEecCCCCCceEEeecC------CCcEEEEecccCCeee
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGH-ND--NVFQ-AKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVE 142 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~--~v~~-~~~~~~~~~~~l~~~~~------dg~v~iw~~~~~~~~~ 142 (492)
+..|+.++.|+.|..+|..+|+.+.++.... .. .+.+ .... ++ .+++++. ++.|..+|..+++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA---KD-TVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TT-EEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE---CC-EEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 5577888889999999999999877663221 10 1111 1111 34 4455443 7899999999988765
Q ss_pred eEEeecCC-----------------------------------C-ceEEEEEcCCCCcEEEEEcCC--------------
Q 011160 143 TKLLGKHQ-----------------------------------G-RAHKLAIEPGSPHVFYTCGED-------------- 172 (492)
Q Consensus 143 ~~~~~~~~-----------------------------------~-~v~~i~~~~~~~~~l~~~~~d-------------- 172 (492)
........ . ....+++.+... +++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCce
Confidence 53222110 0 001355666653 45555432
Q ss_pred --CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC---ceEEEecCCCeEEEEecccccccCCCC
Q 011160 173 --GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (492)
Q Consensus 173 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~v~i~d~~~~~~~~~~~ 243 (492)
+.|..+|.++++.+..++..............++. +...++ + ..++.++.+|.++++|..+++.+....
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVN-GKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEET-TEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccC-CcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 35999999999988776643211000000111221 222234 4 367788999999999999988765433
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.01 E-value=3.1e-07 Score=76.64 Aligned_cols=219 Identities=13% Similarity=0.074 Sum_probs=138.5
Q ss_pred eeeeeeEeecCcc--ceEEEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-e
Q 011160 49 LRLGIYAKLDKHR--GCVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-T 123 (492)
Q Consensus 49 ~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~ 123 (492)
..+++++++. |. .-...|.|+ ++.++.+.+.+| .|+++|+++++.+.++... .........+ .++.|+ +
T Consensus 29 ~~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~--~g~~ly~l 102 (262)
T 3nol_A 29 YDYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISD--WKDKIVGL 102 (262)
T ss_dssp EEEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEE--ETTEEEEE
T ss_pred cceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--CccceeEEEE--eCCEEEEE
Confidence 3456666663 44 345789998 677777777766 8999999999988877322 2333322233 344444 4
Q ss_pred ecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 124 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
.-.++.+.++|..+.+.+......+. ...+++++.. |+.+..++.|.++|..+.+....+..... +. .-
T Consensus 103 tw~~~~v~v~D~~t~~~~~ti~~~~e-----G~glt~dg~~-L~~SdGs~~i~~iDp~T~~v~~~I~V~~~----g~-~~ 171 (262)
T 3nol_A 103 TWKNGLGFVWNIRNLRQVRSFNYDGE-----GWGLTHNDQY-LIMSDGTPVLRFLDPESLTPVRTITVTAH----GE-EL 171 (262)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSC-----CCCEEECSSC-EEECCSSSEEEEECTTTCSEEEEEECEET----TE-EC
T ss_pred EeeCCEEEEEECccCcEEEEEECCCC-----ceEEecCCCE-EEEECCCCeEEEEcCCCCeEEEEEEeccC----Cc-cc
Confidence 44688999999999888776444332 2233356644 45444578899999999988877764210 00 11
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCc
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 283 (492)
..++.+.|. + +.+++..-.+..|.+.|.++++....+.+......... ........+.|+|+|+++.|...+..-
T Consensus 172 ~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~---~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 172 PELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP---LPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp CCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS---CCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred cccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc---ccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 235567776 3 66666666788999999999988776555321110000 111234679999999988777777554
Q ss_pred EEEEec
Q 011160 284 IYLFTQ 289 (492)
Q Consensus 284 i~~~d~ 289 (492)
=++|.+
T Consensus 247 p~~~ev 252 (262)
T 3nol_A 247 PKVFEI 252 (262)
T ss_dssp SEEEEE
T ss_pred CceEEE
Confidence 344443
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.00 E-value=5.7e-07 Score=80.14 Aligned_cols=101 Identities=9% Similarity=0.105 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccC-------------------cCcceEEEEecCCCCCceEEee
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG-------------------HNDNVFQAKIMPFTDDRSIVTC 124 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~l~~~ 124 (492)
..+++|.++++++.++..++.|..|+..++... .+... ....+..+++.+ +...|+.+
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~~g~l~v~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--QNNQLYIV 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--TTTEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--CCCcEEEE
Confidence 457889999987888888899999998765432 22100 113578899986 44456655
Q ss_pred cCCCcEEEEecccCCeeeeE-Eee-cCCCceEEEEEcC-CCCcEEEE
Q 011160 125 AADGQVRHAQILERGGVETK-LLG-KHQGRAHKLAIEP-GSPHVFYT 168 (492)
Q Consensus 125 ~~dg~v~iw~~~~~~~~~~~-~~~-~~~~~v~~i~~~~-~~~~~l~~ 168 (492)
...+.|..++..++...... ... ........+++.+ +| ++.++
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~ 143 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFT 143 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEE
Confidence 54455788886543221110 011 1113467788888 77 44444
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.99 E-value=2.4e-07 Score=89.08 Aligned_cols=169 Identities=11% Similarity=0.065 Sum_probs=95.7
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCc-Cc--ceE-EEEecC-CCCCc-eEEeec------CCCcEEEEecccCCe
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGH-ND--NVF-QAKIMP-FTDDR-SIVTCA------ADGQVRHAQILERGG 140 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~--~v~-~~~~~~-~~~~~-~l~~~~------~dg~v~iw~~~~~~~ 140 (492)
+..|+.++.++.|.-+|..+|+.+..+.... .. .+. ...... ..+++ .+++++ .+|.|.-+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 4567778889999999999999877663221 10 111 111111 00122 555554 378899999988876
Q ss_pred eeeEEeec-C---------------C-----------------------CceEEEEEcCCCCcEEEEEcC----------
Q 011160 141 VETKLLGK-H---------------Q-----------------------GRAHKLAIEPGSPHVFYTCGE---------- 171 (492)
Q Consensus 141 ~~~~~~~~-~---------------~-----------------------~~v~~i~~~~~~~~~l~~~~~---------- 171 (492)
+-...... + . ..-..+++.|... +++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGG
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCccc
Confidence 65422210 0 0 0001345666653 5554442
Q ss_pred ----------C----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEc-CCCC--ceEEEecCCCeEEEEecc
Q 011160 172 ----------D----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA--NLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 172 ----------d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~--~~l~~~~~dg~v~i~d~~ 234 (492)
| +.|..+|.++++....++..............++ -+... .++. ..++.++.+|.++++|..
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5899999999998877764321110000011112 12222 3322 478889999999999999
Q ss_pred cccccCCCC
Q 011160 235 KYKWDGSTD 243 (492)
Q Consensus 235 ~~~~~~~~~ 243 (492)
+++.+....
T Consensus 355 tG~~lw~~~ 363 (582)
T 1flg_A 355 NGKLQNAFP 363 (582)
T ss_dssp TCCEEEEEE
T ss_pred CCCEecccc
Confidence 988765433
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=2.2e-06 Score=86.48 Aligned_cols=293 Identities=9% Similarity=0.013 Sum_probs=173.5
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-------------cCcCcceEEEEecCCCCCceEEeecCC
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-------------SGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~l~~~~~d 127 (492)
...|.++...++|.+.+ |+..+-|.+++..++....... .-....|.++...+ ++. |..|+.+
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC-EEEEEBS
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC-EEEEecC
Confidence 45699999988886544 5553458888987655322110 11345788988876 564 6666766
Q ss_pred CcEEEEecccCCeeeeEE-------eecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcc
Q 011160 128 GQVRHAQILERGGVETKL-------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~-------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (492)
+-|..++........... ..-....|.++...+++. |..|+.++-|..|+..++..... .... .
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~-~~~~------~ 403 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYN-KENR------E 403 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC------------
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEc-cCCC------C
Confidence 778888876543222100 011235689999888773 56777667799999876533221 1000 0
Q ss_pred eeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec
Q 011160 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
.....|.++...++ + .|..|+.++-+..++..+++..... .. ......|.++...+++.+.++..
T Consensus 404 ~~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~----------~~---~~~~~~v~~i~~d~~g~lwigt~ 468 (781)
T 3v9f_A 404 LLSNSVLCSLKDSE-G-NLWFGTYLGNISYYNTRLKKFQIIE----------LE---KNELLDVRVFYEDKNKKIWIGTH 468 (781)
T ss_dssp CCCSBEEEEEECTT-S-CEEEEETTEEEEEECSSSCEEEECC----------ST---TTCCCCEEEEEECTTSEEEEEET
T ss_pred CCCcceEEEEECCC-C-CEEEEeccCCEEEEcCCCCcEEEec----------cC---CCCCCeEEEEEECCCCCEEEEEC
Confidence 13346889988876 4 4555676677999998765432110 00 11245789999999888666655
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEE
Q 011160 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (492)
Q Consensus 281 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s 360 (492)
+.+..|+..++..... ........... .|.++.. +++|.+.+.
T Consensus 469 -~Gl~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~--~i~~i~~-d~~g~lWig 511 (781)
T 3v9f_A 469 -AGVFVIDLASKKVIHH---------------------------------YDTSNSQLLEN--FVRSIAQ-DSEGRFWIG 511 (781)
T ss_dssp -TEEEEEESSSSSCCEE---------------------------------ECTTTSSCSCS--CEEEEEE-CTTCCEEEE
T ss_pred -CceEEEeCCCCeEEec---------------------------------ccCcccccccc--eeEEEEE-cCCCCEEEE
Confidence 7799999776421100 00000000011 3778887 888876654
Q ss_pred eeccCeEEEEecCCCeeeEEEec----CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCc
Q 011160 361 GSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 361 g~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
....| |..|+..+++.. .+.. ....|.++...++|.+.++.. .|.|..|+..+++...
T Consensus 512 t~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV 573 (781)
T ss_dssp ESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE
T ss_pred EcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE
Confidence 43344 777888666543 3321 134689999989988766554 5655889887765443
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.97 E-value=1.7e-06 Score=74.76 Aligned_cols=199 Identities=6% Similarity=-0.005 Sum_probs=120.4
Q ss_pred ceEEEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCC
Q 011160 62 GCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERG 139 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~ 139 (492)
..+..++|++++..| ++-...+.|..++....... .+..........+++.| ++..|+ +-...+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~p~~ia~d~--~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDH--LGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEECCCCCccEEEEEe--cCCeEEEEECCCCEEEEEEcCCCC
Confidence 457899999966544 45556789999998765433 33222334678999998 655555 44556789999886433
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcC--CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
.... ..........++++|++.+++++... .+.|..+++.... ...+... .......++++|+++.
T Consensus 113 ~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~---------~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 113 RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQD---------NLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp CEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECT---------TCSCEEEEEEETTTTE
T ss_pred EEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEEC---------CCCCCcEEEEcCCCCE
Confidence 2211 22222467899999976455555433 4688888876433 2222110 1124688999997566
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
++++-...+.|..+++........ ... ......++.. .+.++++.. .+.|.+++..++
T Consensus 181 lyv~d~~~~~I~~~~~~g~~~~~~---------------~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQPGRRKV---------------LEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EEEEETTTTEEEEEETTEEEEEEE---------------EEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEECCCCEEEEEecCCCceEEE---------------ecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 667777788999999875432110 000 1223456654 333334333 458999998764
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.96 E-value=3.6e-08 Score=82.18 Aligned_cols=184 Identities=16% Similarity=0.120 Sum_probs=119.7
Q ss_pred CCceEeeccCcc--eEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEE-EecCCCeE
Q 011160 9 NNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI-SGSDDRRV 85 (492)
Q Consensus 9 ~~~~l~t~~~dg--~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~i 85 (492)
++.++.+.+.+| .|+++|+++|+++.. ..+..+. ---.+++ ++..|. ..-.++.+
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~-------------------~~l~~~~-FgeGit~--~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQ-------------------IELGKRY-FGEGISD--WKDKIVGLTWKNGLG 109 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEE-------------------EECCTTC-CEEEEEE--ETTEEEEEESSSSEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEE-------------------EecCCcc-ceeEEEE--eCCEEEEEEeeCCEE
Confidence 566777777665 999999999998732 1121111 0112333 344444 44468899
Q ss_pred EEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCC---CceEEEEEcCCC
Q 011160 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEPGS 162 (492)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~ 162 (492)
.+||..+.+.+.++..+. .-..++ + ++..|+.+..++.|.++|..+.+........... ..++.+.|. +|
T Consensus 110 ~v~D~~t~~~~~ti~~~~--eG~glt--~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG--EGWGLT--H--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp EEEETTTCCEEEEEECSS--CCCCEE--E--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEECccCcEEEEEECCC--CceEEe--c--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 999999999988884322 223344 4 7777777776788999999888776664444333 334557776 56
Q ss_pred CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCC--cceeecceEEEEEcCCCCceEEEe
Q 011160 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
.+++....+..|.+.|.++++.+..+......... ........+.|+|+|++..++++|
T Consensus 183 -~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 183 -EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 56666667889999999999998888764332111 111223578999999855555555
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.94 E-value=4.4e-08 Score=81.60 Aligned_cols=185 Identities=9% Similarity=0.011 Sum_probs=123.9
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
++.+.++.+.+|.|+++|+++|+++.. . +.... ---.+++.. +++.+..-.++.+.+|
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~-------------------~-l~~~~-FgeGit~~g-~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWM-------------------E-RLGNI-FAEGLASDG-ERLYQLTWTEGLLFTW 121 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEE-------------------E-ECTTC-CEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeE-------------------E-CCCCc-ceeEEEEeC-CEEEEEEccCCEEEEE
Confidence 367788888889999999999998832 1 22211 112245443 3444445568999999
Q ss_pred ECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC---ceEEEEEcCCCCcE
Q 011160 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPHV 165 (492)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~ 165 (492)
|..+.+.+.++... ..-..++ + ++..|+.+..++.|.++|..+.+.........+.. .++.+.|. +| .+
T Consensus 122 D~~Tl~~~~ti~~~--~eGwGLt--~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~l 193 (268)
T 3nok_A 122 SGMPPQRERTTRYS--GEGWGLC--Y--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VI 193 (268)
T ss_dssp ETTTTEEEEEEECS--SCCCCEE--E--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred ECCcCcEEEEEeCC--CceeEEe--c--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EE
Confidence 99999998888432 2224454 3 67777777778999999999887776655544433 34667776 56 56
Q ss_pred EEEEcCCCcEEEEeCCCCCccceeecCCCCCC-C--cceeecceEEEEEcCCCCceEEEec
Q 011160 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-R--NYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
++....+..|.+.|.++++.+..+........ . ......-.+.|+++|++..++++|-
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 66666788999999999998887765421100 0 0002235789999998666676663
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.90 E-value=1.1e-05 Score=71.21 Aligned_cols=123 Identities=8% Similarity=0.012 Sum_probs=74.9
Q ss_pred eeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC--cE
Q 011160 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QV 130 (492)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~v 130 (492)
....+... .....++|+++++++++-..++.|..|+.... ....+ ........+++.+ +++++++..... .|
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~--dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTS--NGDLVATGWNADSIPV 97 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECT--TSCEEEEEECTTSCEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcC--CCcEEEEeccCCcceE
Confidence 33444332 45678999999998888778899999997653 33332 2234688999999 888665543322 36
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (492)
..++..++.......+. .......++..+++ ..+++-..++.|+.+|..++
T Consensus 98 ~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEECTTSCEEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTT
T ss_pred EEEcCCCCeEEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCC
Confidence 56665555543221121 12233555555554 45555556788888887654
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=2.3e-07 Score=91.07 Aligned_cols=328 Identities=11% Similarity=0.089 Sum_probs=173.3
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeccCcCcc---------e-EEEEecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDN---------V-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
+..|+.++.++.|.-+|..+|+.+.++....... + ..+++ .+..+++++.++.|..+|..+++.+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 4566677778899999999999887773211100 0 11233 34567888889999999999998876
Q ss_pred eEEeecCC--CceEE-EEEcCCCCcEEEEEcC------CCcEEEEeCCCCCccceeecCCCCCCCcc-------------
Q 011160 143 TKLLGKHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNY------------- 200 (492)
Q Consensus 143 ~~~~~~~~--~~v~~-i~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------- 200 (492)
........ ..+.+ ..+. ++ .++++.. +|.|..+|.++++.+..+...........
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~-~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVV-KG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEE-TT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeccCCCCCcceecCCCEEE-CC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 64332111 11111 1111 33 3455543 58999999999998877654221110000
Q ss_pred --------eeecceEEEEEcCCCCceEEEecCCC-------------------eEEEEecccccccCCCCCCCCccccCC
Q 011160 201 --------MTVVNLNAIAIDPRNANLFAVAGSDE-------------------YTRLYDIRKYKWDGSTDFGQPADYFCP 253 (492)
Q Consensus 201 --------~~~~~v~~~~~~p~~~~~l~~~~~dg-------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (492)
........++++|. ..+++.++.++ .|..+|..+++..-........ .
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~----~ 293 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD----S 293 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC----C
T ss_pred ccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCc----c
Confidence 01112235788887 46777777666 3899999988765433221000 0
Q ss_pred CCcCCCcccceEEEEEcCCCC---eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcc
Q 011160 254 PNLIGDEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (492)
Q Consensus 254 ~~~~~~~~~~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (492)
... ....+.....+..+|+ .++.++ ++.++++|..+++.....+..+.. +...... ..+..+...... ..
T Consensus 294 wd~--~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~-~~g~p~~~~~~~--~~ 367 (668)
T 1kv9_A 294 WDF--TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL-ATGRPVEAPGVR--YE 367 (668)
T ss_dssp SCC--CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT-TTCCEEECTTTT--CS
T ss_pred ccc--cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc-ccCCcccccccc--cc
Confidence 000 0011222222333564 566665 678999999988755332221110 0000000 000000000000 00
Q ss_pred ccCCceeeccccceeeeeEEeecCCCcEEEE------------------------------------eeccCeEEEEecC
Q 011160 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS------------------------------------GSDCGRIFIWKKK 373 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~s------------------------------------g~~dg~i~iwd~~ 373 (492)
......+.+......-..+++ +|+..+++. ...+|.|+.||+.
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSF-NPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEE-ETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred CCeeEECCCCccccCCCcceE-CCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 000000000000000122344 555444432 1235899999999
Q ss_pred CCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
+|+.+-....+. .+....+...+.+++.++.|+.|++||..+++..
T Consensus 447 tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 447 KQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp TTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 999887765433 2333344456788888999999999999988764
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=3.1e-05 Score=78.05 Aligned_cols=294 Identities=9% Similarity=0.072 Sum_probs=173.2
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc------CcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
..|.++...+++.+.+.. .. -+.+||..++....-... .....|.++...+ ++. |..|+..+-|.+++.
T Consensus 211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK--DNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECT--TSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC--CCC-EEEEeCCCCeEEECC
Confidence 568999998888766544 44 588999876654321111 1235688988876 665 455555456788887
Q ss_pred ccCCeeeeEE------------eecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceee
Q 011160 136 LERGGVETKL------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 136 ~~~~~~~~~~------------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
.+........ ..-....|.++...++|. |..|+.++-|..++..+..... +..............
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 362 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSN 362 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCC
Confidence 6654321110 011345789999988873 5777777789999987654332 111000000000023
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCc
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 283 (492)
..|.++...++ + .|..|+.++-|..|+..+++..... .........|.++...+++.+.+....+.
T Consensus 363 ~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~d~~g~lWigt~~~G 428 (781)
T 3v9f_A 363 KVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAIYNK------------ENRELLSNSVLCSLKDSEGNLWFGTYLGN 428 (781)
T ss_dssp SCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETTEE
T ss_pred cceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEEEcc------------CCCCCCCcceEEEEECCCCCEEEEeccCC
Confidence 46889988876 3 4556666667999998765432110 00011245799999998888777555678
Q ss_pred EEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeec-cccceeeeeEEeecCCCcEEEEee
Q 011160 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGS 362 (492)
Q Consensus 284 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~g~~l~sg~ 362 (492)
+..++..++.. ..+.. ......|.++.. .++|.+.+. +
T Consensus 429 l~~~~~~~~~~---------------------------------------~~~~~~~~~~~~v~~i~~-d~~g~lwig-t 467 (781)
T 3v9f_A 429 ISYYNTRLKKF---------------------------------------QIIELEKNELLDVRVFYE-DKNKKIWIG-T 467 (781)
T ss_dssp EEEECSSSCEE---------------------------------------EECCSTTTCCCCEEEEEE-CTTSEEEEE-E
T ss_pred EEEEcCCCCcE---------------------------------------EEeccCCCCCCeEEEEEE-CCCCCEEEE-E
Confidence 99998765321 01100 001112778877 788775554 4
Q ss_pred ccCeEEEEecCCCeeeEEEecC-----CceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 363 DCGRIFIWKKKGGELIRVIEAD-----RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
. +-|.+|+..+++........ ...|.++...++|.+.+.. .++-|..|+..+++..
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~ 528 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVR 528 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEE
Confidence 4 55889998777654433222 3568999999988866644 3345777888765443
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.83 E-value=8e-07 Score=74.12 Aligned_cols=210 Identities=10% Similarity=-0.019 Sum_probs=132.8
Q ss_pred eeeEeecCcc--ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCc
Q 011160 52 GIYAKLDKHR--GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (492)
Q Consensus 52 ~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 129 (492)
+.++++ .|. .-...|.|+ ++.+..+.+.+|.|+++|+++++.+..+ .....--..+++. .+...++.-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~---g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD---GERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC---SSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe---CCEEEEEEccCCE
Confidence 455555 343 345788887 4677788888899999999999988776 2322122335553 2344444556889
Q ss_pred EEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEE
Q 011160 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (492)
+.+||..+.+.+......+. -..++ +++. .|+.+..++.|.++|.++.+.+..+....... .-..++.+
T Consensus 118 v~V~D~~Tl~~~~ti~~~~e---GwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-----~v~~lNeL 186 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGE---GWGLC--YWNG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-----PVELINEL 186 (268)
T ss_dssp EEEEETTTTEEEEEEECSSC---CCCEE--EETT-EEEEECSSSEEEEECTTTCCEEEEEECEETTE-----ECCCEEEE
T ss_pred EEEEECCcCcEEEEEeCCCc---eeEEe--cCCC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-----cccccccc
Confidence 99999998887776444322 23333 5664 45555568899999999998887776432100 11235667
Q ss_pred EEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCC
Q 011160 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (492)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 282 (492)
.|. + +.+++....+..|.+.|.++++....+.+....... .. .........+.|+++|+++.|...+..
T Consensus 187 e~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-~~-~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 187 ECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV-AG-QVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-TT-TCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-cc-cccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 776 3 566666667889999999999877665442110000 00 011123467999999987666665544
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.83 E-value=3.9e-06 Score=70.55 Aligned_cols=221 Identities=7% Similarity=0.120 Sum_probs=136.5
Q ss_pred EeecCccceEEEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 55 AKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
+.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.+..+..+-....-.+++.+ ++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~--~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG--DNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence 4566666789999999976644 456778889999987 7777776333335678889988 88877776677889999
Q ss_pred ecccCCee---eeEEee----cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC---CCccceeecCCCCCCCcceee
Q 011160 134 QILERGGV---ETKLLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 134 ~~~~~~~~---~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 203 (492)
++.....+ ....+. ........++|.|.+. .|+++.......+|.+.. ......+..... ......
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~---~~~~~~ 172 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL---QRQFTL 172 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEECHHH---HHTCCS
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecchhh---cccccc
Confidence 88765531 111111 1234568999999985 455555544455555441 111111110000 000012
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCc
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 283 (492)
..+..++++|..+++++.....+.+..+|.... ....+.+.... .-....-.....|+|.++|++.+++-.+-
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~------~~l~~~~~qpEGia~d~~G~lyIvsE~n~ 245 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGS------RGLSHNIKQAEGVAMDASGNIYIVSEPNR 245 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTG------GGCSSCCCSEEEEEECTTCCEEEEETTTE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCcc------CCcccccCCCCeeEECCCCCEEEEcCCce
Confidence 356899999987888888888899999997643 33222221000 00001123678899999998777655566
Q ss_pred EEEEec
Q 011160 284 IYLFTQ 289 (492)
Q Consensus 284 i~~~d~ 289 (492)
+++|..
T Consensus 246 ~y~f~~ 251 (255)
T 3qqz_A 246 FYRFTP 251 (255)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 777654
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.81 E-value=1.2e-06 Score=72.55 Aligned_cols=185 Identities=12% Similarity=0.081 Sum_probs=120.9
Q ss_pred CceEeeccCc--ceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEE
Q 011160 10 NKRARTSVDK--ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (492)
Q Consensus 10 ~~~l~t~~~d--g~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (492)
+.++.+.+.+ +.|+.+|+.+|+++.. ..+..+.-. -.+++. .+++....-.++.+.+
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~-------------------~~l~~~~fg-eGi~~~-~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQR-------------------AEVPPPYFG-AGIVAW-RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEE-------------------EECCTTCCE-EEEEEE-TTEEEEEESSSSEEEE
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEE-------------------EeCCCCcce-eEEEEe-CCEEEEEEeeCCEEEE
Confidence 5666666665 4999999999998732 122222111 123333 2344445566899999
Q ss_pred EECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCC---ceEEEEEcCCCCc
Q 011160 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPH 164 (492)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~ 164 (492)
||..+.+.+.++..+. .-..++ + ++..|+.+..++.|.++|..+.+.........+.. .++.+.+. +| .
T Consensus 90 ~D~~tl~~~~ti~~~~--~Gwglt--~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~ 161 (243)
T 3mbr_X 90 YDLATLTPRARFRYPG--EGWALT--S--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-E 161 (243)
T ss_dssp EETTTTEEEEEEECSS--CCCEEE--E--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred EECCcCcEEEEEeCCC--CceEEe--e--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-E
Confidence 9999999988884332 224554 3 67777777778899999999887766654544432 34566665 55 5
Q ss_pred EEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCc---ceeecceEEEEEcCCCCceEEEec
Q 011160 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN---YMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
+++....+..|.+.|.++++.+..+.......... .....-.+.|+++|++..++++|-
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 66666678899999999999988877554322111 112235789999998666666653
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.80 E-value=2.4e-05 Score=70.15 Aligned_cols=254 Identities=10% Similarity=0.016 Sum_probs=148.8
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeee
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~ 142 (492)
.+|.+..++. +|+.+.. ..|+..++......... . ....+..++|.+ ....|+ +-...+.|..+++.......
T Consensus 36 ~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 36 RSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLL-N-NLENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp SCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEE-C-SCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcccccccCc-eeEeecc-cceEEEeCCCCeeEEee-c-CCCceEEEEEec--cccEEEEEeccCCceEEEecCCCCceE
Confidence 3455655644 4444433 45888887755443322 2 334578999997 555555 44567888888886654322
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
. +.........+++.+.+.+++++-...+.|.+.++........+.. .......++++|.++.++++-
T Consensus 110 ~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~----------~l~~P~~iavdp~~g~ly~td 177 (349)
T 3v64_C 110 V--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ----------SLEKPRAIALHPMEGTIYWTD 177 (349)
T ss_dssp E--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT----------TCSCEEEEEEETTTTEEEEEE
T ss_pred E--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC----------CCCCcceEEEecCcCeEEEec
Confidence 2 2222345678999986656667777778999999876543222211 112468899999766666666
Q ss_pred cCC-CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCC
Q 011160 223 GSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPP 299 (492)
Q Consensus 223 ~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~ 299 (492)
... +.|..+++...... .+..........++++|++..|..+. .+.|..++++....
T Consensus 178 ~~~~~~I~r~~~dG~~~~---------------~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~----- 237 (349)
T 3v64_C 178 WGNTPRIEASSMDGSGRR---------------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR----- 237 (349)
T ss_dssp CSSSCEEEEEETTSCSCE---------------ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----
T ss_pred cCCCCEEEEEeCCCCCcE---------------EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-----
Confidence 555 78888887643210 11111234578999998776665555 44799998764210
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeE
Q 011160 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (492)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~ 379 (492)
...+..... ...++++ . .+.++++-...+.|..++..+|+.+.
T Consensus 238 ---------------------------------~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~~ 280 (349)
T 3v64_C 238 ---------------------------------KAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQE 280 (349)
T ss_dssp ---------------------------------EEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred ---------------------------------EEEEeCCCC--CceEEEE-E-CCEEEEecCCCCeEEEEEccCCCccE
Confidence 001111111 1355665 3 35556666667888888877777766
Q ss_pred EEecCCceeEEEe
Q 011160 380 VIEADRHVVNCIE 392 (492)
Q Consensus 380 ~~~~h~~~v~~~~ 392 (492)
.+.........++
T Consensus 281 ~i~~~~~~p~gi~ 293 (349)
T 3v64_C 281 IIRNKLHFPMDIH 293 (349)
T ss_dssp EEECSCSCCCCEE
T ss_pred EeccCCCCCceEE
Confidence 6654333333443
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.80 E-value=3.6e-06 Score=69.62 Aligned_cols=219 Identities=14% Similarity=0.058 Sum_probs=135.9
Q ss_pred eeeeEeecCcc--ceEEEEEEcCCCCEEEEecCC--CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC
Q 011160 51 LGIYAKLDKHR--GCVNTVSFNTDGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 51 ~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
+++++++ .|. .-...+.|++ +.++.+.+.+ ..|+.+|+.+++.+..+.-....---.+++. +++..+..-.
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~---~~~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW---RDRLIQLTWR 83 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEESS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe---CCEEEEEEee
Confidence 3455555 454 4567899986 5666666665 4899999999998877732222112334443 3444445557
Q ss_pred CCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce
Q 011160 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (492)
Q Consensus 127 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (492)
++.+.++|..+.+.+......++ -..++ +++..+ +.+..++.|.++|..+.+.+..+....... .-..+
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~---Gwglt--~dg~~L-~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~-----~~~~l 152 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGE---GWALT--SDDSHL-YMSDGTAVIRKLDPDTLQQVGSIKVTAGGR-----PLDNL 152 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSC---CCEEE--ECSSCE-EEECSSSEEEEECTTTCCEEEEEECEETTE-----ECCCE
T ss_pred CCEEEEEECCcCcEEEEEeCCCC---ceEEe--eCCCEE-EEECCCCeEEEEeCCCCeEEEEEEEccCCc-----ccccc
Confidence 89999999998887776444332 23444 556445 444558899999999998887776432100 11245
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~ 286 (492)
+.+.+. ++.+++..-.+..|.+.|.++++......+........ ..........+.|+++|+++.|...+..-=++
T Consensus 153 NeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~ 228 (243)
T 3mbr_X 153 NELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFVTGKRWPML 228 (243)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEEEETTCSEE
T ss_pred eeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEEECCCCCcE
Confidence 666665 35666666678899999999998776655432110000 00011234679999999887776666554344
Q ss_pred Eec
Q 011160 287 FTQ 289 (492)
Q Consensus 287 ~d~ 289 (492)
|.+
T Consensus 229 ~~v 231 (243)
T 3mbr_X 229 YEI 231 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.78 E-value=1.2e-06 Score=84.17 Aligned_cols=331 Identities=12% Similarity=0.055 Sum_probs=167.3
Q ss_pred CCEEEEecC-CCeEEEEEC-CCCceeeeeccCcCcce----------EEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHNDNV----------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 73 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
+..|+.++. ++.|.-+|. .+|+.+.++.......+ ..+++ .+..++.++.++.|..+|..+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence 445666666 788999999 89998877632211110 11233 355778888899999999999988
Q ss_pred eeeEEeecCCC--ceEE-EEEcCCCCcEEEEEcC------CCcEEEEeCCCCCccceeecCCCCC---------------
Q 011160 141 VETKLLGKHQG--RAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDD--------------- 196 (492)
Q Consensus 141 ~~~~~~~~~~~--~v~~-i~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~--------------- 196 (492)
+....+..+.. .+.+ ..+. ++ .+++++. ++.|..+|.++++.+..+.......
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 76544433211 1111 1111 33 3455554 7899999999999887665432110
Q ss_pred ---------CC----cceeecceEEEEEcCCCCceEEEecCC----------------CeEEEEecccccccCCCCCCCC
Q 011160 197 ---------RR----NYMTVVNLNAIAIDPRNANLFAVAGSD----------------EYTRLYDIRKYKWDGSTDFGQP 247 (492)
Q Consensus 197 ---------~~----~~~~~~~v~~~~~~p~~~~~l~~~~~d----------------g~v~i~d~~~~~~~~~~~~~~~ 247 (492)
.. ..........+++.+.. ..++.++.+ +.|..+|..+++..-.......
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~ 293 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence 00 00000001235666753 455555432 3588999988875443222100
Q ss_pred ccccCCCCcCCCcccceEEEEEcCCCC---eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 011160 248 ADYFCPPNLIGDEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (492)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (492)
.. . -......++. +...++|+ .++.++ ++.++++|..+++........+...+...... ..+..+....
T Consensus 294 d~----~-d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~-~~g~p~~~~~ 366 (571)
T 2ad6_A 294 DE----W-DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL-KTGTPVRDPE 366 (571)
T ss_dssp CS----S-CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT-TTCSEEECGG
T ss_pred cc----c-ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc-cCCceecccc
Confidence 00 0 0000112221 22234674 455555 66899999988765443222110000000000 0000000000
Q ss_pred CCCCccccCCceeeccccceeeeeEEeecCCCcEEEEee-------------------------------------ccCe
Q 011160 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-------------------------------------DCGR 366 (492)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~-------------------------------------~dg~ 366 (492)
..............+......-..+++ +|+..+|+... .+|.
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~ 445 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSY-DPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQ 445 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEE-ETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceE-CCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCe
Confidence 000000000000000000000123455 66666555542 3588
Q ss_pred EEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 367 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
|..||+.+++.+-++... ..+....+...+..++.++.|+.|+.||..+++..
T Consensus 446 l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 446 IRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 999999999988776533 22333333334567777889999999999998765
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=1.4e-06 Score=83.59 Aligned_cols=213 Identities=12% Similarity=0.008 Sum_probs=117.6
Q ss_pred CCEEEEecC-CCeEEEEEC-CCCceeeeeccCcCc----------ceEEEEecCCCCCce----EEeecCCCcEEEEecc
Q 011160 73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHND----------NVFQAKIMPFTDDRS----IVTCAADGQVRHAQIL 136 (492)
Q Consensus 73 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~----l~~~~~dg~v~iw~~~ 136 (492)
+..|+.++. ++.|.-+|. .+|+.+.++...... ....++++| .+.. |+.++.|+.|.-+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence 445666666 788999999 899988776322111 012345544 3444 8888889999999999
Q ss_pred cCCeeeeEEeecCC--CceEE-EEEcCCCCcEEEEEc------CCCcEEEEeCCCCCccceeecCCCCCC----------
Q 011160 137 ERGGVETKLLGKHQ--GRAHK-LAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDR---------- 197 (492)
Q Consensus 137 ~~~~~~~~~~~~~~--~~v~~-i~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~---------- 197 (492)
+++.+.......+. ..+.+ -.+. ++ .+++++ .+|.|+.+|.++++.+..+........
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVV-KD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEE-TT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCEEEeecCCCCCccceeecCCEEE-CC--EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 99877654443211 01111 1111 34 345554 379999999999998876654321100
Q ss_pred ----------------Cccee-ec-ceEEEEEcCCCCceEEEecCC----------------CeEEEEecccccccCCCC
Q 011160 198 ----------------RNYMT-VV-NLNAIAIDPRNANLFAVAGSD----------------EYTRLYDIRKYKWDGSTD 243 (492)
Q Consensus 198 ----------------~~~~~-~~-~v~~~~~~p~~~~~l~~~~~d----------------g~v~i~d~~~~~~~~~~~ 243 (492)
..+.. .. .-..+++.+. ..+++.+..+ +.|..+|..+++..-...
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~-~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG-TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCC-CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 00000 00 0113456666 4466666554 378899998887643322
Q ss_pred CCCCccccCCCCcCCCcccceEEEEEc-CCC---CeeEeec-CCcEEEEecCCCCCCCC
Q 011160 244 FGQPADYFCPPNLIGDEQVGITGLAFS-DQS---ELLVSYN-DEFIYLFTQDMGLGPNP 297 (492)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~---~~l~~~~-~~~i~~~d~~~~~~~~~ 297 (492)
..... .. -......++. +... .+| +.++.++ ++.++++|..+++....
T Consensus 296 ~~~~d----~w-d~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 296 KTPHD----EW-DYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp SSTTC----SS-CCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCCCc----cc-cccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 21000 00 0000111222 2222 466 4566555 67899999988875544
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.76 E-value=1.4e-05 Score=72.76 Aligned_cols=253 Identities=10% Similarity=0.019 Sum_probs=147.8
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeeeeE
Q 011160 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETK 144 (492)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~ 144 (492)
|.+..+. .+|+.+.. ..|+..++......... . ....+..++|.+ .+..|+ +-...+.|..+++........
T Consensus 81 C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~- 153 (386)
T 3v65_B 81 CKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLL-N-NLENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEV- 153 (386)
T ss_dssp EEECSSC-CEEEEECB-SCEEEECTTSCCCEEEE-C-SCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEEE-
T ss_pred ECCcccc-ceeEeecC-ccceeeccCCCcEEEEe-c-CCCccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEEE-
Confidence 4444453 34444433 56888888765543332 2 334578999997 555454 545678888888865543221
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (492)
+.........+++.+.+..++++-...+.|.+.++........+.. .......++++|.++.++++-..
T Consensus 154 -~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~----------~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 154 -VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ----------SLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp -ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS----------SCSCEEEEEEETTTTEEEEEECS
T ss_pred -EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC----------CCCCCcEEEEEcCCCeEEEeccC
Confidence 2222335578899886656667777778899988875443222211 11246889999976666666555
Q ss_pred C-CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCC
Q 011160 225 D-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSS 301 (492)
Q Consensus 225 d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~ 301 (492)
. +.|..+++...... .+..........|+++|++..|..+. .+.|..+++.....
T Consensus 223 ~~~~I~r~~~dG~~~~---------------~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~------- 280 (386)
T 3v65_B 223 NTPRIEASSMDGSGRR---------------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------- 280 (386)
T ss_dssp SSCEEEEEETTSCSCE---------------EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-------
T ss_pred CCCEEEEEeCCCCCcE---------------EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-------
Confidence 5 77888887543210 11111233568899998776665554 44788888764210
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE
Q 011160 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 381 (492)
...+..... ...++++ . .+.++++-...+.|..++..+|+.+..+
T Consensus 281 -------------------------------~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 281 -------------------------------KAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp -------------------------------EEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -------------------------------EEEEECCCC--CceEEEE-E-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 001111111 1356665 3 3456666667788999987788777776
Q ss_pred ecCCceeEEEee
Q 011160 382 EADRHVVNCIEP 393 (492)
Q Consensus 382 ~~h~~~v~~~~~ 393 (492)
.........+++
T Consensus 326 ~~~~~~p~gi~v 337 (386)
T 3v65_B 326 RNKLHFPMDIHT 337 (386)
T ss_dssp ECSCSCCCCEEE
T ss_pred ccCCCCCceEEE
Confidence 543333444443
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.75 E-value=3.3e-05 Score=68.26 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=139.3
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccC---CeeeeEEeecCC
Q 011160 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILER---GGVETKLLGKHQ 150 (492)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~---~~~~~~~~~~~~ 150 (492)
+|+.+.. ..|+..++.+.+....+ .....+..++|.+ .+..|+ +-...+.|..+++... ..... .+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEE--CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEE-EECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEehh--cCCCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEE-EEeCCC
Confidence 3444443 46888998877654433 2345678999998 655554 5455688999988651 11111 122222
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC-CeEE
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTR 229 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~v~ 229 (492)
.....+++.+.+.+++++-...+.|.++++........+.. .......++++|.++.++++.... +.|.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----------~~~~P~~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC----------TTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC----------CCCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence 45678999876546666667788999999875443322221 112467899999756555555443 6788
Q ss_pred EEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccc
Q 011160 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (492)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (492)
.+++...... .+....-.....++++|++..|..+. .+.|..++++...
T Consensus 147 ~~~~dG~~~~---------------~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-------------- 197 (316)
T 1ijq_A 147 KGGLNGVDIY---------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-------------- 197 (316)
T ss_dssp EEETTSCCEE---------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------------
T ss_pred EEcCCCCCeE---------------EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc--------------
Confidence 8877532110 00111234578999999877666555 4479999986421
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCceee-ccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEec
Q 011160 308 EASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (492)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 383 (492)
.+.+. .........++++ . .+.++++-...+.|..++..+|+.+..+..
T Consensus 198 -------------------------~~~~~~~~~~~~~P~giav-~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 198 -------------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp -------------------------CEEEEECTTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred -------------------------eEEEeecCCccCCcEEEEE-E-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 11111 1000011356666 4 355666666778999999878877666643
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.74 E-value=6.7e-07 Score=88.00 Aligned_cols=245 Identities=10% Similarity=0.046 Sum_probs=130.7
Q ss_pred CCceEeeccCcc-----------eEEEEeeccCcchhhhhhhcccccccceeeeeeeEee-cCccceEEEEEEcCCCCEE
Q 011160 9 NNKRARTSVDKA-----------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDIL 76 (492)
Q Consensus 9 ~~~~l~t~~~dg-----------~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l 76 (492)
++++++.|+.+. .+.+||..+++... + ..+ ..+.....++++.++++++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~----------------~---~~~~~~~~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD----------------R---TVTVTKHDMFCPGISMDGNGQIV 257 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC----------------C---EEEECSCCCSSCEEEECTTSCEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe----------------C---cccCCCCCCccccccCCCCCCEE
Confidence 778888876542 57889988776541 1 111 1222223356778899999
Q ss_pred EEecC-CCeEEEEECCCCceeeeeccCcCc-ceEEEEecCCCCCceEEeec-CC-----CcEEEEecccCCeeeeE----
Q 011160 77 ISGSD-DRRVILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCA-AD-----GQVRHAQILERGGVETK---- 144 (492)
Q Consensus 77 ~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~-~d-----g~v~iw~~~~~~~~~~~---- 144 (492)
+.|+. +..+.+||..+++-...- ..+.. .-.+++..+ +++.++.|+ .+ ..+.+||..+.......
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred EeCCCCCCceEEecCcCCceeECC-CCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 99984 458999998876542221 11111 223455666 888888888 34 56899998776543310
Q ss_pred -EeecCCCceEEEEEcCCCCcEEEEEcCC---------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 145 -LLGKHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 145 -~~~~~~~~v~~i~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
.+..... ...+..++ ++++.++.+ ..+..||..+.............. ........-.++.|...
T Consensus 335 ~p~~~~~~---~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~-~~~~~~~~~~av~~~~~ 409 (656)
T 1k3i_A 335 NPMLTADK---QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR-GVAPDAMCGNAVMYDAV 409 (656)
T ss_dssp GGGCCCCT---TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT-EECCCCBTCEEEEEETT
T ss_pred cccccccc---cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc-ccCCCCCCCceEeccCC
Confidence 0000000 01122333 344555444 356788888776443222111000 00000012244555443
Q ss_pred CCceEEEecCCC-----------eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C-
Q 011160 215 NANLFAVAGSDE-----------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D- 281 (492)
Q Consensus 215 ~~~~l~~~~~dg-----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~- 281 (492)
++++++.|+.++ .+.+||..+.+..... ..... ....-.+++..|++++++.++ +
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~----------~~~mp--~~R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA----------SNGLY--FARTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC----------TTCCS--SCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc----------cCCCC--CCcccCCeEECCCCCEEEECCccc
Confidence 477888887543 5777777665422110 00000 111223456678999888876 2
Q ss_pred ----------CcEEEEecCCC
Q 011160 282 ----------EFIYLFTQDMG 292 (492)
Q Consensus 282 ----------~~i~~~d~~~~ 292 (492)
..+.+||..+.
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGGT
T ss_pred CcCcCCCCcccceEEEcCCCC
Confidence 24788887653
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.70 E-value=8.9e-06 Score=71.73 Aligned_cols=223 Identities=12% Similarity=0.107 Sum_probs=127.7
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCC--
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD-- 82 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-- 82 (492)
.+.++++++++...++.|..||... +.. ..+. -.+....+++.++|+++++....
T Consensus 38 a~~~~g~lyv~d~~~~~I~~~d~~g-~~~---------------------~~~~-~~~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 38 ASAPDGTIFVTNHEVGEIVSITPDG-NQQ---------------------IHAT-VEGKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTC-CEE---------------------EEEE-CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred EECCCCCEEEEeCCCCeEEEECCCC-ceE---------------------EEEe-CCCCceeEEEcCCCcEEEEeccCCc
Confidence 4556777777776778888888763 222 1111 12468899999999976665432
Q ss_pred CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe-eeeE-------EeecCCCceE
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETK-------LLGKHQGRAH 154 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~-------~~~~~~~~v~ 154 (492)
..|..++..+++...............++..+ ++..+++-..++.|.++|...+.. +... .....-...+
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 24666777777653222111222334555555 555555555678888888754321 1100 0001112345
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCC-CCcc--ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEE
Q 011160 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (492)
Q Consensus 155 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~ 231 (492)
.| +|++..++++-...+.|..+++.. ++.. ..+. .......++++++ ++++++....+.|.++
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-----------~~~~P~gi~vd~d-G~l~va~~~~~~V~~~ 238 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-----------EQTNIDDFAFDVE-GNLYGATHIYNSVVRI 238 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-----------ESCCCSSEEEBTT-CCEEEECBTTCCEEEE
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-----------ccCCCCCeEECCC-CCEEEEeCCCCeEEEE
Confidence 55 777755666777788999999875 3221 1111 1123466889998 5777776677889999
Q ss_pred ecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEc---CCCCeeEeec
Q 011160 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS---DQSELLVSYN 280 (492)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~ 280 (492)
+.. ++.... .. .........+++|. |+++.|+.++
T Consensus 239 ~~~-G~~~~~------------~~-~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 239 APD-RSTTII------------AQ-AEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp CTT-CCEEEE------------EC-GGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CCC-CCEEEE------------ee-cccccCCceEEEEecccCCCCEEEEEC
Confidence 875 332100 00 00112457899998 7877665554
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.68 E-value=8.8e-05 Score=67.85 Aligned_cols=247 Identities=11% Similarity=0.028 Sum_probs=146.0
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEee-cCCCcEEEEecccCC--eeeeEEeecCCC
Q 011160 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERG--GVETKLLGKHQG 151 (492)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~--~~~~~~~~~~~~ 151 (492)
+|+.+. ...|+..++........+ .....+..|+|.+ .+..|+.+ ...+.|+.+++.... ......+.....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 444444 367888888766543333 3456788999998 55555544 456788888876522 111112333445
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecC-CCeEEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRL 230 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~i 230 (492)
....+++.+.+.+++++-...+.|.+.++........+.. .......|+++|.++.++++-.. .+.|..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----------~~~~P~~iavdp~~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----------SSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC----------CCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence 6788999985546777777788999999886654333321 11246889999975555555433 467888
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCcccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 308 (492)
.++...... .+....-.....|++++++..|+.+. .+.|..++++...
T Consensus 230 ~~~dG~~~~---------------~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~--------------- 279 (400)
T 3p5b_L 230 GGLNGVDIY---------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--------------- 279 (400)
T ss_dssp EETTSCSCE---------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---------------
T ss_pred EeCCCCccE---------------EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc---------------
Confidence 887543210 11111234678999999877766655 4479999876421
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCcee-eccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCce
Q 011160 309 ASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV 387 (492)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 387 (492)
...+ ..........++++ . .+.++++-...+.|..++..+|+.+..+......
T Consensus 280 ------------------------~~~~~~~~~~l~~P~gl~v-~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~ 333 (400)
T 3p5b_L 280 ------------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 333 (400)
T ss_dssp ------------------------CEEEEECSSTTSSEEEEEE-E-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSC
T ss_pred ------------------------cEEEEeCCCCCCCCEEEEE-e-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCC
Confidence 1111 11100011345555 2 3455556666788999998888877777644444
Q ss_pred eEEEe
Q 011160 388 VNCIE 392 (492)
Q Consensus 388 v~~~~ 392 (492)
...+.
T Consensus 334 p~~i~ 338 (400)
T 3p5b_L 334 PEDMV 338 (400)
T ss_dssp EEEEE
T ss_pred CceEE
Confidence 44444
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.65 E-value=5.7e-06 Score=81.44 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=75.9
Q ss_pred EEEEcC-CCCEEEEecCCC-----------eEEEEECCCCcee--eeeccCcCcceEEEEecCCCCCceEEeecC-CCcE
Q 011160 66 TVSFNT-DGDILISGSDDR-----------RVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQV 130 (492)
Q Consensus 66 ~~~~s~-~~~~l~s~~~d~-----------~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v 130 (492)
++++.+ ++++++.|+.+. .+.+||..+++.. ......+.....++++.+ ++.+++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC--CCCEEEeCCCCCCce
Confidence 456677 888888887543 5889998877642 222122333344567777 8999999884 4589
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEc-CC-----CcEEEEeCCCCCcc
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-ED-----GLVQHFDLRTGAAT 186 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~ 186 (492)
.+||..+........+.. ...-.+++..+++ ++++.|+ .+ ..+.+||..+.+..
T Consensus 268 ~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQV-ARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEEEGGGTEEEECCCCSS-CCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEecCcCCceeECCCCCc-cccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcce
Confidence 999998776544322221 1122345666777 5778887 34 56999999887643
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.63 E-value=4.6e-05 Score=69.45 Aligned_cols=200 Identities=10% Similarity=0.046 Sum_probs=120.3
Q ss_pred ceEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCC-ceEEeecCCCcEEEEecccCC
Q 011160 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERG 139 (492)
Q Consensus 62 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~ 139 (492)
..+..++|.+.+. ++++-...+.|..++.........+ .........+++.+ .+ .++++-...+.|.+.++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~--~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEET--TTTEEEEEETTTTEEEECBTTSCS
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEe--CCCeEEEEcCCCCeEEEEeCCCCc
Confidence 4577999997554 4555556788999998765543322 22233456788876 44 444555566788888875433
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
... .+...-.....|++.|.+..++++-... +.|..+++........... .....+.|+++|+++.+
T Consensus 193 ~~~--l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~----------~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 193 RKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT----------HLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp CEE--EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS----------SCSCEEEEEEEGGGTEE
T ss_pred eEE--eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC----------CCCCeeeEEEeCCCCEE
Confidence 222 1333345678999999775565665555 7888888765433222211 11236889999876666
Q ss_pred EEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
+++-+..+.|..+++...... .+..........+++. .+.++++.. .+.|..++..++
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~---------------~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 261 YWVDAKHHVIERANLDGSHRK---------------AVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEETTTTEEEEECTTSCSCE---------------EEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEECCCCEEEEEeCCCCeeE---------------EEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCC
Confidence 677777888999997642210 0111112345677773 344444433 557888885554
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.63 E-value=5.3e-06 Score=82.84 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=110.6
Q ss_pred CCCC-CCCceEeecc-----CcceEEEEeeccC-cchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEE
Q 011160 4 ASNN-NNNKRARTSV-----DKALVDVWLRELG-QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL 76 (492)
Q Consensus 4 ~~~~-~~~~~l~t~~-----~dg~v~~w~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 76 (492)
..++ |||++||-+. ....|+++|+.+| +.+. ..+. .....++|+|||+.|
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------------------~~~~---~~~~~~~WspDg~~l 235 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------------------DKVS---GTNGEIVWGPDHTSL 235 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------------------CCEE---EECSCCEECSSTTEE
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------------------cccc---CceeeEEEecCCCEE
Confidence 3568 9999887433 2346999999988 6331 0111 123468999999888
Q ss_pred EEecCC-----CeEEEEECCCCcee--eeeccCcCcceEEEEecCCCCCceEEeec---CCCcEEEEecccCCeee--eE
Q 011160 77 ISGSDD-----RRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCA---ADGQVRHAQILERGGVE--TK 144 (492)
Q Consensus 77 ~s~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iw~~~~~~~~~--~~ 144 (492)
+....+ ..|.++++.++... ..+..........+.|+| ++++|+..+ ....|.++++.++.... ..
T Consensus 236 ~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 313 (751)
T 2xe4_A 236 FYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI 313 (751)
T ss_dssp EEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE
T ss_pred EEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEE
Confidence 877654 36888888776422 222112333466889999 999888655 23468888887652111 22
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEcCC----CcEEEEeCCCC-Cccc-eeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 145 LLGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTG-AATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 145 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d----g~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
..........++.|+..+ .+++....+ ..|..+++.++ .... .+... ....+..+.+. ++.+
T Consensus 314 l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~---------~~~~l~~~~~~--~~~l 381 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS---------EDVFMESIAVR--SNYL 381 (751)
T ss_dssp SSCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC---------SSEEEEEEEEC--SSEE
T ss_pred eecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC---------CCcEEEEEEEE--CCEE
Confidence 233344555666655444 555555443 35667777653 2122 22110 11134555555 3567
Q ss_pred EEEecCCCeEEEEe
Q 011160 219 FAVAGSDEYTRLYD 232 (492)
Q Consensus 219 l~~~~~dg~v~i~d 232 (492)
+++...++..++|-
T Consensus 382 v~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 382 VVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEeCCEEEEEE
Confidence 77777788655443
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=1.4e-05 Score=76.84 Aligned_cols=333 Identities=10% Similarity=0.018 Sum_probs=163.1
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCcCcce--------EEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEE
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNV--------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 145 (492)
..|+.++.++.|.-+|..+|+.+.++........ ..+++ .+..++.++.++.|.-+|..+++.+....
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 3444445434488899999998877632211100 12222 34567778889999999999998876544
Q ss_pred eecCCC--ceE-EEEEcC---CCCcEEEEEc------CCCcEEEEeCCCCCccceeecCCCC---------------CC-
Q 011160 146 LGKHQG--RAH-KLAIEP---GSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPID---------------DR- 197 (492)
Q Consensus 146 ~~~~~~--~v~-~i~~~~---~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------~~- 197 (492)
...+.. .+. ...+.. ++...+++++ .++.|..+|.++++.+......... ..
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 432210 111 111111 1222556654 3789999999999987654321100 00
Q ss_pred --C-----------c--ceeecceEEEEEcCCCCceEEEecC--------------------C----CeEEEEecccccc
Q 011160 198 --R-----------N--YMTVVNLNAIAIDPRNANLFAVAGS--------------------D----EYTRLYDIRKYKW 238 (492)
Q Consensus 198 --~-----------~--~~~~~~v~~~~~~p~~~~~l~~~~~--------------------d----g~v~i~d~~~~~~ 238 (492)
. . ......-..++++|. ..+++.+.. | +.|..+|..+++.
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~-~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAE-TNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT-TTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred cCCCccccccccccccccCCccccCCceEcCC-CCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 0 0 000001124567776 345555442 2 5899999998876
Q ss_pred cCCCCCCCCccccCCCCcCCCcccceEEEEEc-CCCC---eeEeec-CCcEEEEecCCCCCCCCCCCCCCCccccccccC
Q 011160 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (492)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (492)
.-........ . .. ......++. +... .+|+ .++.++ ++.++++|..+++........+...+.......
T Consensus 304 ~W~~q~~~~d-~---wd-~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~ 377 (582)
T 1flg_A 304 KWFYQHTPND-A---WD-FSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK 377 (582)
T ss_dssp EEEEESSTTC-C---SC-CCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT
T ss_pred EEEEeCCCCC-c---cc-ccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc
Confidence 5433221000 0 00 000011222 2222 4664 566666 678999999888765443322200000000000
Q ss_pred CCCCCCCCCCCCC------CccccCCceeeccccceeeeeEEeecCCCcEEEEee-------------------------
Q 011160 314 SDHTSAASPSTAN------TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS------------------------- 362 (492)
Q Consensus 314 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~------------------------- 362 (492)
.++.+....... ...........+......-..+++ +|+..++++..
T Consensus 378 -~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 455 (582)
T 1flg_A 378 -TGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAY-SQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGF 455 (582)
T ss_dssp -TCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEE-CTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred -CCCEeEccccCCccccccccCCCceEECcCCccccCCCCceE-CCCCCEEEEechhcceeeecccccccCCCceeccce
Confidence 000000000000 000000000000000000123344 55444333321
Q ss_pred --------ccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 363 --------DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 363 --------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
.+|.|..||+.+|+.+-+...+. ++..-.....+.+++.++.|+.|+.||.++++..
T Consensus 456 ~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 456 RIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp EEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 36889999999999886665332 2222122224667778999999999999998764
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.60 E-value=0.00012 Score=65.59 Aligned_cols=221 Identities=10% Similarity=-0.005 Sum_probs=130.9
Q ss_pred CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceE
Q 011160 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (492)
..|+..++........ +. ....+..++|.+....++++-...+.|..+++........+.. ......
T Consensus 53 ~~I~~i~~~g~~~~~~--~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------~~~~p~ 119 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLL--LN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------GLESPG 119 (349)
T ss_dssp SCEEEECTTSCCEEEE--EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCC
T ss_pred cceEEEeCCCCeeEEe--ec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----------CCCCcc
Confidence 4577777654433221 22 3345789999987656666666788999999887654332221 112346
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--C-CcE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D-EFI 284 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~-~~i 284 (492)
.+++.+.++.++++-...+.|.+.++...... .+..........++++|.+..|+... . +.|
T Consensus 120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~---------------~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK---------------VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------EEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEecCCCeEEEEcCCCCeEEEEcCCCCceE---------------EEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 78888865677777777889999988643210 11111234568899999766555544 3 468
Q ss_pred EEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe-ec
Q 011160 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SD 363 (492)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg-~~ 363 (492)
..++++... ...+.. ........+++ +|++..|+.+ ..
T Consensus 185 ~r~~~dG~~---------------------------------------~~~~~~-~~~~~PnGla~-d~~~~~lY~aD~~ 223 (349)
T 3v64_C 185 EASSMDGSG---------------------------------------RRIIAD-THLFWPNGLTI-DYAGRRMYWVDAK 223 (349)
T ss_dssp EEEETTSCS---------------------------------------CEESCC-SSCSCEEEEEE-ETTTTEEEEEETT
T ss_pred EEEeCCCCC---------------------------------------cEEEEE-CCCCCcceEEE-eCCCCEEEEEECC
Confidence 888776421 111100 00111478888 8766655544 45
Q ss_pred cCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
.+.|..+++........+.........+++. .+.++++-...+.|...+..+++
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCC
Confidence 6789999986433333333333456778873 45555555556778888754444
No 274
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.55 E-value=0.00067 Score=65.70 Aligned_cols=160 Identities=7% Similarity=-0.001 Sum_probs=97.3
Q ss_pred ceEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC--CCcEEEEecccC
Q 011160 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILER 138 (492)
Q Consensus 62 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~ 138 (492)
.....|++.+.+. +.++-...+.|.+.++..... ..+....-.....|++.| .+..|+.+.. .+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCCC
Confidence 4678899998554 555556678999999875433 333234445677899988 6555554432 355655565432
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCce
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (492)
..... ....-...+.|++.+++.+++++-...+.|...++........... .......+++..+ .+
T Consensus 161 ~~~~l--~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~----------~~~~P~gi~~~~~--~l 226 (619)
T 3s94_A 161 SRFII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG----------SLPHPFALTLFED--IL 226 (619)
T ss_dssp SCEEE--ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESSS--EE
T ss_pred ceEEE--EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC----------CCCCceEEEEeCC--EE
Confidence 22221 2223456789999997756666666778899999876443322210 0112345677653 56
Q ss_pred EEEecCCCeEEEEecccccc
Q 011160 219 FAVAGSDEYTRLYDIRKYKW 238 (492)
Q Consensus 219 l~~~~~dg~v~i~d~~~~~~ 238 (492)
+++-...+.|...|..+++.
T Consensus 227 y~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEECTTTCSEEEEESSSCCC
T ss_pred EEecCCCCEEEEEECCCCcc
Confidence 66666778899999877653
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.54 E-value=0.00012 Score=64.63 Aligned_cols=238 Identities=16% Similarity=0.104 Sum_probs=139.0
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceE-EeecCCCcEEEEecccCCeeeeEEeecCCCce
Q 011160 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (492)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v 153 (492)
+|+.+. ...|+..++........+..........+.|.+ .+..| ++-...+.|..+++........ .+...-...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~-~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQN-VVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCE-EEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEE-EEcCCCCCc
Confidence 344433 357899998866421222122234567899987 54444 4545677888888866532111 122223456
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec-CCCeEEEEe
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYD 232 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~i~d 232 (492)
..+++.+.+..++++-...+.|.++++........+. . .......++++|.++.++.+-. ..+.|..++
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-Q---------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S---------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-C---------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 7899987665666777777899999987644322221 1 1224688999987555555542 357788887
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
+...... .+....-.....++++|++..|..+. .+.|..++++...
T Consensus 152 ~dG~~~~---------------~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~----------------- 199 (318)
T 3sov_A 152 MDGSSRF---------------IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN----------------- 199 (318)
T ss_dssp TTSCSCE---------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------
T ss_pred cCCCCeE---------------EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-----------------
Confidence 7532110 01111123568999999777666555 4579999886421
Q ss_pred ccCCCCCCCCCCCCCCCccccCCcee-eccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecC
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 384 (492)
.+.+ .+... ...++++ .. +.++.+-...+.|..++..+|+....+...
T Consensus 200 ----------------------~~~~~~~~~~--~P~glav-~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 200 ----------------------RQAVVKGSLP--HPFALTL-FE-DILYWTDWSTHSILACNKYTGEGLREIHSD 248 (318)
T ss_dssp ----------------------CEEEECSCCS--CEEEEEE-ET-TEEEEEETTTTEEEEEETTTCCSCEEEECC
T ss_pred ----------------------eEEEecCCCC--CceEEEE-eC-CEEEEEecCCCeEEEEECCCCCceEEEeCC
Confidence 1111 11111 1356666 43 455556666789999999888877666543
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.52 E-value=8.4e-05 Score=62.46 Aligned_cols=221 Identities=13% Similarity=0.103 Sum_probs=129.0
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
+.+.+-...+..+++.|++..++++...++.|...|+. ++.+..+.... ....-.+++.++ +.++++.-
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---------~~D~EGIa~~~~-g~~~vs~E 88 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---------VKDLETIEYIGD-NQFVISDE 88 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---------CSSEEEEEECST-TEEEEEET
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---------CCChHHeEEeCC-CEEEEEEC
Confidence 34666667899999999875666667788899999998 77666654321 124667888876 56666655
Q ss_pred CCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCCCCCCCCCCC
Q 011160 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~ 302 (492)
.++.+.++++......... ............+.....++|+|.++.|.++. .+...+|.+........+.
T Consensus 89 ~~~~l~~~~v~~~~~i~~~------~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~--- 159 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKIL------KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH--- 159 (255)
T ss_dssp TTTEEEEEEECTTCCEEEE------EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE---
T ss_pred CCCcEEEEEcCCCCeeeee------eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee---
Confidence 6788999887654311000 00000000122356689999999987666665 4444555554200000000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCC-CcEEEEeeccCeEEEEecCCCeeeEEE
Q 011160 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~-g~~l~sg~~dg~i~iwd~~~~~~~~~~ 381 (492)
......+.+......+.++++ +|. +++++.......|.++|. .|+.+..+
T Consensus 160 ---------------------------i~~~~~~~~~~~~~d~S~l~~-dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~ 210 (255)
T 3qqz_A 160 ---------------------------ISKDKALQRQFTLDDVSGAEF-NQQKNTLLVLSHESRALQEVTL-VGEVIGEM 210 (255)
T ss_dssp ---------------------------EEECHHHHHTCCSSCCCEEEE-ETTTTEEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred ---------------------------eecchhhccccccCCceeEEE-cCCCCeEEEEECCCCeEEEEcC-CCCEEEEE
Confidence 000000000000011567887 664 556666777789999997 46666555
Q ss_pred ecCC---------ceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 382 EADR---------HVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 382 ~~h~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
.-.. .....|+|.++|++.++ +.-..++++..
T Consensus 211 ~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 211 SLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp ECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 3221 24688999999985555 66665555544
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.49 E-value=4e-05 Score=76.58 Aligned_cols=116 Identities=13% Similarity=0.195 Sum_probs=70.2
Q ss_pred ceEEEEec-CCCCCceEEeecC-C----CcEEEEecccC-CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-----C
Q 011160 106 NVFQAKIM-PFTDDRSIVTCAA-D----GQVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----G 173 (492)
Q Consensus 106 ~v~~~~~~-~~~~~~~l~~~~~-d----g~v~iw~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g 173 (492)
.+...+|| | ||++|+.+.. + ..|+++|+.++ +.+.. .+. .....++|+||+..++++ ..+ .
T Consensus 175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---~~~~~~~WspDg~~l~y~-~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---GTNGEIVWGPDHTSLFYV-TKDETLREN 247 (751)
T ss_dssp EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---EECSCCEECSSTTEEEEE-EECTTCCEE
T ss_pred EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---CceeeEEEecCCCEEEEE-EECCCCCCC
Confidence 67889999 9 9998885432 2 35999999887 53211 111 123568899999644444 443 2
Q ss_pred cEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec---CCCeEEEEecccc
Q 011160 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKY 236 (492)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~i~d~~~~ 236 (492)
.|+++++.++.....+..... .......+.|+|+ +++|+..+ ....|+++|+.++
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~-------~~~~~~~~~~SpD-g~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEH-------NPLFSAFMYKAAD-TNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECC-------CTTCEEEEEECTT-SSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEECCCCchhcEEEEecC-------CCceEEEEEECCC-CCEEEEEecCCCCceEEEEECCCC
Confidence 588888877653322111100 1113467899998 55555443 2346788888764
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.48 E-value=0.00026 Score=62.36 Aligned_cols=203 Identities=9% Similarity=0.036 Sum_probs=120.2
Q ss_pred ceEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe
Q 011160 62 GCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (492)
Q Consensus 62 ~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 140 (492)
..+..++|.+. +.++.+-...+.|..++...+.....+....-.....+++.+. .+.++++-...+.|.++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC-CCeEEEEECCCCEEEEEECCCCcE
Confidence 35678999985 4555565667889999987654222221222235667888761 344555555678899998865432
Q ss_pred eeeEEeecCCCceEEEEEcCCCCcEEEEEc-CCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceE
Q 011160 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (492)
Q Consensus 141 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (492)
... ..........+++.|.+..++++-. ..+.|...++........... .-...+.++++|+++.++
T Consensus 114 ~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~----------~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 114 KVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS----------EIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS----------SCSCEEEEEEETTTTEEE
T ss_pred EEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC----------CCCCccEEEEeccCCEEE
Confidence 221 3234456789999987645544442 357888888764332222111 112458899999766666
Q ss_pred EEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 220 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
++-+..+.|..+++...... .+..........+++..+ .++++-. .+.|..++..++.
T Consensus 182 ~aD~~~~~I~~~d~dG~~~~---------------~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNRQ---------------AVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTSCSCE---------------EEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCEEEEEcCCCCceE---------------EEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCC
Confidence 67677889999998642210 011112234566777543 3333333 5578888886653
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.48 E-value=0.00061 Score=60.47 Aligned_cols=274 Identities=8% Similarity=0.026 Sum_probs=144.2
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-c--cCcCcceEEEEecCCCCCceEEeecCCCcEEEEeccc
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-H--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 137 (492)
...+.+|.|.+.+..+++| ..|.| +...+.|+.-... . ......+.++.|.+ +..++ ++..+.| +....
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~---~~~~~-~g~~g~i--~~S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG---NEGWI-VGEPPIM--LHTTD 106 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET---TEEEE-EEETTEE--EEESS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC---CeEEE-EECCCeE--EEECC
Confidence 4579999998878777754 56755 3343444321111 1 11244688999875 34444 4455644 33333
Q ss_pred C-CeeeeEEe-ecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 138 R-GGVETKLL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 138 ~-~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
+ +.-..... ..+...+..+.+.+++ .+++++ .+|.|.. ....++.-...... ....+..+++.|+
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~---------~~~~~~~~~~~~~- 173 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQE---------AIGVMRNLNRSPS- 173 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECS---------CCCCEEEEEECTT-
T ss_pred CCCCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecC---------CCcceEEEEEcCC-
Confidence 2 22111101 1233457778877666 454544 4554432 22223322222111 1235788999987
Q ss_pred CceEEEecCCCeEEEEec--ccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDI--RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~ 293 (492)
+.+++.+...+..+..|- .+-+. ........+..+.+.+++++++++.++.+++.+.+.+.
T Consensus 174 ~~~~~~g~~G~~~~S~d~gG~tW~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 174 GEYVAVSSRGSFYSTWEPGQTAWEP-----------------HNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCEEEEETTSSEEEEECTTCSSCEE-----------------EECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEE
T ss_pred CcEEEEECCCcEEEEeCCCCCceeE-----------------CCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCC
Confidence 566666654443333442 11110 01112356788999999988887777777766422111
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCce--eeccccceeeeeEEeecCCCcEEEEeeccCeEEEEe
Q 011160 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV--YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd 371 (492)
.- ..+.. +. +.. .+..+.+ .+++.+++++. +|.| ++.
T Consensus 237 tW-----------------------------------~~~~~~~~~-~~~--~~~~v~~-~~~~~~~~~g~-~g~i-~~S 275 (327)
T 2xbg_A 237 NW-----------------------------------GELLSPLRR-NSV--GFLDLAY-RTPNEVWLAGG-AGAL-LCS 275 (327)
T ss_dssp EE-----------------------------------CCCBCTTSS-CCS--CEEEEEE-SSSSCEEEEES-TTCE-EEE
T ss_pred ee-----------------------------------EeccCCccc-CCc--ceEEEEe-cCCCEEEEEeC-CCeE-EEe
Confidence 00 00000 00 111 1677777 88888777765 6766 445
Q ss_pred cCCCeeeEEEec---CCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 372 KKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 372 ~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
...|+.-..+.. ....+.++.|.+++. ++.++.+|.|.-++-
T Consensus 276 ~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 276 QDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 555655444442 235578888876555 556667897776654
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.46 E-value=0.00027 Score=70.11 Aligned_cols=187 Identities=13% Similarity=0.057 Sum_probs=112.5
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCe--eeeEEeecCCC
Q 011160 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGG--VETKLLGKHQG 151 (492)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~ 151 (492)
+|+.+. ...|+..++......... .....+..|+|.+ ....|+ +-...+.|+.+++..... .....+.....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEE--CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccc-ccceeEeeccCCcceeee--cCCCceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 444433 345788887765543322 3345678999987 555444 545567888888764311 11122333445
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC-CeEEE
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRL 230 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~v~i 230 (492)
....|++.+.+.+++++-...+.|.+.++........+.. .......|+++|.++.++++-... +.|..
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~----------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 541 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC----------TTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC----------CCCCcceEEEecCCCCEEEecCCCCCeEEE
Confidence 6778999987766777777888999999886543333221 112468899999755555554333 67888
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCC
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~ 291 (492)
.++...... .+..........|++++.+..|+.+. .+.|..+++..
T Consensus 542 ~~~dG~~~~---------------~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 542 GGLNGVDIY---------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EETTSCCEE---------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EecCCCceE---------------EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 887643211 11112234678999998776666555 34688888765
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.45 E-value=0.00043 Score=61.07 Aligned_cols=204 Identities=11% Similarity=0.002 Sum_probs=118.4
Q ss_pred ceEEEEEEcCCCC-EEEEecCCCeEEEEECCC---CceeeeeccCcCcceEEEEecCCCCC-ceEEeecCCCcEEEEecc
Q 011160 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQIL 136 (492)
Q Consensus 62 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~ 136 (492)
.....++|++.+. ++++-...+.|..+++.. +.....+....-.....+++.+ .+ .++++-...+.|.+.++.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~--~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee--cCCeEEEEECCCCEEEEEeCC
Confidence 4567999998654 445555678999999875 1222222222224567888876 44 444555667889999886
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
....... +.........+++.|.+..++++.... +.|...++..... ..+... .-...+.++++|++
T Consensus 108 g~~~~~~--~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~---------~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 108 GVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTE---------NIQWPNGITLDLLS 175 (316)
T ss_dssp SSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECS---------SCSCEEEEEEETTT
T ss_pred CCceEEE--EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEEC---------CCCCceEEEEeccC
Confidence 4332221 332335678999999765555555443 6888888764332 222111 11246789999886
Q ss_pred CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCCC
Q 011160 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~~ 293 (492)
+.++++-+..+.|..+|+........ .. ..........+++.. +.++++-. .+.|..++..++.
T Consensus 176 ~~lY~~D~~~~~I~~~d~dg~~~~~~------------~~-~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 176 GRLYWVDSKLHSISSIDVNGGNRKTI------------LE-DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEE------------EE-CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCeEEEEecCCCceEEE------------ee-cCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCc
Confidence 66666667778999999864221000 00 001122356677753 44444443 4579999876654
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=0.00026 Score=65.38 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=95.2
Q ss_pred eEEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC-CC----cEEEEecc
Q 011160 63 CVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DG----QVRHAQIL 136 (492)
Q Consensus 63 ~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg----~v~iw~~~ 136 (492)
....|+++| ++..|..+...+.|+.+|...+... .+ .........++|++ +++.|+.+.. ++ .+.+.+ .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~-~~~~~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~-~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TV-YSGLSKVRTICWTH--EADSMIITNDQNNNDRPNNYILT-R 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EE-ECCCSCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EE-ecCCCCcceEEEeC--CCCEEEEEeCCCCcccceEEEEe-C
Confidence 346889998 3555555544478999998876643 33 23445688999999 8886665553 22 233333 3
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
.+.......+.. ......++++|++..++++-...+.|..++..++......... .......++|+|++.
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---------~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ---------DSGWEFHIQFHPSGN 282 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS---------SSSCCEEEEECTTSS
T ss_pred CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC---------CCCcceeEEEcCCCC
Confidence 333221111222 2345788999943367677777789999998866542222211 112356899999843
Q ss_pred ceEEEecCCCeEEEEecc
Q 011160 217 NLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 217 ~~l~~~~~dg~v~i~d~~ 234 (492)
.++++-...+.|..++..
T Consensus 283 ~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCEEEEEeCC
Confidence 255666677788887765
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.45 E-value=0.00017 Score=66.57 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=93.3
Q ss_pred eEEEEEEcCC--CCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC---C-cEEEEecc
Q 011160 63 CVNTVSFNTD--GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G-QVRHAQIL 136 (492)
Q Consensus 63 ~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g-~v~iw~~~ 136 (492)
.-..++|+|+ ...|..+...+.|+.++..++.... + .........+++.+ +++++++.... . .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~-~~~~~~P~giavd~--dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-K-TTNIGQCADVNFTL--NGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-E-CCCCSCEEEEEECT--TCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-e-ecCCCCccEEEECC--CCCEEEEcCCCCcccceEEEEECC
Confidence 3568899985 3344444443889999987776543 3 23445689999999 88844443311 1 13333322
Q ss_pred cCCeeeeEEeecCCCceEEEEEcC-CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
.. ......+. .-.....+++.| ++ .++++-..++.|+.++..++.....+.... .......++|+|++
T Consensus 216 ~~-~~~~~~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~--------~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 216 SG-FTERLSLC-NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMD--------TKGSNFHIVWHPTG 284 (433)
T ss_dssp GT-TCCEEEEE-ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECS--------CCSSCEEEEECTTS
T ss_pred CC-eecccccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccC--------CCCCcccEEEeCCC
Confidence 22 11111122 224456789999 55 566666677889999998776522221111 01122469999984
Q ss_pred CceEEEecCCCeEEEEecc
Q 011160 216 ANLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 216 ~~~l~~~~~dg~v~i~d~~ 234 (492)
..++++-...+.|+.+++.
T Consensus 285 ~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp SEEEEEETTTTEEEEEEBC
T ss_pred CEEEEEeCCCCEEEEEeCC
Confidence 3366666677899998865
No 284
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.44 E-value=5.9e-05 Score=67.03 Aligned_cols=253 Identities=11% Similarity=0.001 Sum_probs=130.6
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccc--cccceeeeeeeEeecCccceEEEEEEcC-CCCEEEEec
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRA--SEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS 80 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~ 80 (492)
+.+.++++++.++..++.|..|+..++++........... ..+.... ............+++.+ +++++++ .
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~p~gi~~~~~~g~l~v~-d 98 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD----AEKRPLCGRTYDISYNLQNNQLYIV-D 98 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCC----GGGHHHHCCEEEEEEETTTTEEEEE-E
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccc----hhccccCCCCceEEEcCCCCcEEEE-E
Confidence 4456778878888888999999887554320000000000 0000000 00001123578899998 6655444 3
Q ss_pred CCCeEEEEECCCCceeeeec---cC-cCcceEEEEecCCCCCceEEeecC-----------------CCcEEEEecccCC
Q 011160 81 DDRRVILWDWKTERVKLSFH---SG-HNDNVFQAKIMPFTDDRSIVTCAA-----------------DGQVRHAQILERG 139 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~l~~~~~-----------------dg~v~iw~~~~~~ 139 (492)
..+.|..++..++.. ..+. .+ .......+++.+ .++...++-.. .+.|..|+..++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~-~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQ-RTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECT-TTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEec-CCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 345588888765532 2221 11 113467788875 13444444321 3667778765543
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc--ceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
... +.........|+++|++..++++-+..+.|.+|++.....- ..+.. ... ...+++.++ ++
T Consensus 177 ~~~---~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~----------~~g-P~gi~~d~~-G~ 241 (322)
T 2fp8_A 177 TTL---LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK----------IPN-PGNIKRNAD-GH 241 (322)
T ss_dssp EEE---EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----------CSS-EEEEEECTT-SC
T ss_pred EEE---eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----------CCC-CCCeEECCC-CC
Confidence 221 11112345689999998545555566789999998754211 11110 011 567899998 55
Q ss_pred eEEEecC----------CCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEE
Q 011160 218 LFAVAGS----------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (492)
Q Consensus 218 ~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~ 286 (492)
+.++... .+.|..+|.. ++....+... . ......+.++++ .+++++++.. .+.|..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~--------~---g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~ 308 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP--------P---PFAGEHFEQIQE-HDGLLYIGTLFHGSVGI 308 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC--------T---TTTTSCCCEEEE-ETTEEEEECSSCSEEEE
T ss_pred EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC--------C---CCccccceEEEE-eCCEEEEeecCCCceEE
Confidence 5555433 4667788764 3322111110 0 000123555655 3555555544 568999
Q ss_pred EecCC
Q 011160 287 FTQDM 291 (492)
Q Consensus 287 ~d~~~ 291 (492)
+++..
T Consensus 309 ~~~~~ 313 (322)
T 2fp8_A 309 LVYDK 313 (322)
T ss_dssp EEC--
T ss_pred Eeccc
Confidence 98764
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.43 E-value=3.4e-06 Score=83.07 Aligned_cols=241 Identities=11% Similarity=0.015 Sum_probs=134.4
Q ss_pred CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEee-cCCCcEEEEeccc----CCeeeeEEeecCCCceEEE
Q 011160 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILE----RGGVETKLLGKHQGRAHKL 156 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~----~~~~~~~~~~~~~~~v~~i 156 (492)
.+.|+..++.+......+ .....+..|+|.+ .+..|+.+ ...+.|+.+++.. ...... +.........|
T Consensus 385 ~~~I~~id~~~~~~~~~~--~~~~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~gl 458 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGL 458 (699)
T ss_dssp TTC-CEECTTSCCEECCS--CCCTTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCB--CCSCC--CCCE
T ss_pred ccceEEEeCCCCcceeee--ccCcceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEE--EeCCCCCcceE
Confidence 356888888766543332 2234567899988 66666554 4567888888864 111111 21122345678
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC-CeEEEEeccc
Q 011160 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRK 235 (492)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~v~i~d~~~ 235 (492)
++.+.+.+++++-...+.|.++++........+.. .......++++|.++.++++-... +.|..+++..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~----------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG 528 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 528 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC----------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC----------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence 88865546666666678899999876543322211 112356788998755555544333 6777776643
Q ss_pred ccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccC
Q 011160 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (492)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (492)
... ..+..........|+|+|++..|+.+. .+.|.++++.....
T Consensus 529 ~~~---------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------------- 574 (699)
T 1n7d_A 529 VDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------------- 574 (699)
T ss_dssp CCC---------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-------------------
T ss_pred CCe---------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-------------------
Confidence 211 001111123456799999876655554 44799988764211
Q ss_pred CCCCCCCCCCCCCCccccCCceeec-cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEe
Q 011160 314 SDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE 392 (492)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 392 (492)
+.+.. .........|++ ..+ .++++....+.|..++..+|+.+..+......++.|+
T Consensus 575 --------------------~~~~~~~~~~~~P~glav-d~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 575 --------------------KTILEDEKRLAHPFSLAV-FED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp --------------------EEECCCSSSCSSCCCCEE-ETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred --------------------EEEEecCCcCCCceEeEE-ECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 11100 000001245555 333 4555666678999999888888877754333355555
Q ss_pred ec
Q 011160 393 PH 394 (492)
Q Consensus 393 ~s 394 (492)
+.
T Consensus 633 v~ 634 (699)
T 1n7d_A 633 LF 634 (699)
T ss_dssp BC
T ss_pred Ee
Confidence 44
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.00032 Score=65.02 Aligned_cols=276 Identities=8% Similarity=-0.007 Sum_probs=140.6
Q ss_pred ceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEee-cCCCceEEEEE-------cCCCCcEEEEEcCCC----
Q 011160 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQGRAHKLAI-------EPGSPHVFYTCGEDG---- 173 (492)
Q Consensus 106 ~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~v~~i~~-------~~~~~~~l~~~~~dg---- 173 (492)
....|+|.|...+.++++....+.|++.|+..+......... ........|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 456889987112344444444467888887665443321111 11235889999 999954544444432
Q ss_pred --cEEEEeCCC-CCcc-----ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecc-------cccc
Q 011160 174 --LVQHFDLRT-GAAT-----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR-------KYKW 238 (492)
Q Consensus 174 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~-------~~~~ 238 (492)
.|.+++... +... ..+. .......++++|+++.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred CceEEEEecCCCCceeecccceeec-----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 266665333 2221 1111 112346788999767778888888999999997 4432
Q ss_pred cCCCCCCC--CccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccCC
Q 011160 239 DGSTDFGQ--PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (492)
Q Consensus 239 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (492)
-....... ..... ...........++|+|+|++|..+. ...|+.++......... .+ ...+.....
T Consensus 289 ~tp~~~~~~g~~~~l----~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~---~~---~~~aG~~g~ 358 (496)
T 3kya_A 289 WDPIVKNNPNTFKQL----FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI---TP---YNFVGGYKQ 358 (496)
T ss_dssp CCCBGGGCTTTEEEE----EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC---CC---EEEEEBTTB
T ss_pred eccccccccccccee----EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec---cc---EEecCCCCC
Confidence 00000000 00000 0011123457899999999655554 44788877653210000 00 000000000
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccceeee-eEEeec-------CCCcEEEEeeccCeEEEEecCCCeeeEEEecC--
Q 011160 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVK-GVNFFG-------PKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-- 384 (492)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~s-------~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-- 384 (492)
.+ . .+. ......|.. .. .++. . ++|.++++=..++.|+.++ .+|. +.++.+.
T Consensus 359 ~G-----~-~DG---~~~~a~f~~------P~~gv~v-d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~ 420 (496)
T 3kya_A 359 SG-----Y-RDD---VGTEARMNN------PCQGVFV-KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGA 420 (496)
T ss_dssp CC-----C-BCC---BGGGCBCSS------EEEEEEE-ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCT
T ss_pred Cc-----c-cCC---cccccccCC------CeEEEEE-ccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccc
Confidence 00 0 000 000001110 12 2222 3 5677777777788999998 4664 4444321
Q ss_pred ------------C----------ceeEEEeecCC-CCeEEEeeCCCCEEEeccCCCCCC
Q 011160 385 ------------R----------HVVNCIEPHPH-STVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 385 ------------~----------~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
. .....|++.++ +.++++=.....|+.++++.....
T Consensus 421 ~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 421 STSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp THHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred cccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 0 23678899886 666665566778888888765443
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.31 E-value=0.0024 Score=61.93 Aligned_cols=233 Identities=11% Similarity=0.002 Sum_probs=139.3
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEEecccCCeeeeEEeecCCCce
Q 011160 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (492)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v 153 (492)
+|+.+ ....|+..++.+......+....-..+..++|.+ .+..|+ +-..++.|..+++........ +.......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~~v--~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALEHV--VEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcEEE--EeCCCCCc
Confidence 44444 3467999999866543333223345688999998 555555 445678888888765433221 22222457
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe-cCCCeEEEEe
Q 011160 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDEYTRLYD 232 (492)
Q Consensus 154 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~i~d 232 (492)
..+++.+.+.+++++-...+.|.+.++........+. . .-.....++++|.++.++.+- +..+.|...+
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~---------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-K---------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-S---------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-C---------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence 7899987765676777777899999987654322221 1 122468999999756555554 2356777777
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCcccccc
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 310 (492)
+...... .+. ........|+++++++.|..+. .+.|..+++....
T Consensus 153 ~dG~~~~---------------~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~----------------- 199 (628)
T 4a0p_A 153 MDGSERT---------------TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN----------------- 199 (628)
T ss_dssp TTSCSCE---------------EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------
T ss_pred CCCCceE---------------EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc-----------------
Confidence 6543210 011 1234678999999877666655 4578888886521
Q ss_pred ccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEE
Q 011160 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (492)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 381 (492)
...+..... ...++++ .. +.++++-...+.|...|..+|+....+
T Consensus 200 ----------------------~~v~~~~l~--~P~glav-~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 200 ----------------------REVIADDLP--HPFGLTQ-YQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp ----------------------CEEEEECCS--CEEEEEE-ET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ----------------------eEEeeccCC--CceEEEE-EC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 011221111 1356666 33 455555556788988887777654444
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.30 E-value=0.00085 Score=61.96 Aligned_cols=225 Identities=9% Similarity=0.105 Sum_probs=114.1
Q ss_pred ccceEEEEEEcCCCCEEEEecCC---Ce-EEEEECCCCcee-eeeccCcCcceEEEEecCCCCCceEE-eecCCCcEEEE
Q 011160 60 HRGCVNTVSFNTDGDILISGSDD---RR-VILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHA 133 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d---~~-i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw 133 (492)
.......++|+++|+++++.... .. +...+...+... ..+ ........+++.| +...|+ +-..++.|+.+
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~~~~P~giavd~--~~G~lyv~d~~~~~V~~~ 255 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--CNARGAKTCAVHP--QNGKIYYTRYHHAMISSY 255 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--EECSSBCCCEECT--TTCCEEECBTTCSEEEEE
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--cccCCCCEEEEeC--CCCeEEEEECCCCEEEEE
Confidence 34557899999999955554321 12 333332221110 111 1223456678887 444455 44567788888
Q ss_pred ecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC--CCcc--ceeecC-CCCCC-Cc---ceeec
Q 011160 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT--GAAT--ELFTCR-PIDDR-RN---YMTVV 204 (492)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--~~~~~~-~~~~~-~~---~~~~~ 204 (492)
+..++.........+.......++|+|++..++++-...+.|+.+++.. +... ..+... ..... .+ ...-.
T Consensus 256 d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 335 (433)
T 4hw6_A 256 DPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW 335 (433)
T ss_dssp CTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred ECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence 8875544222111112223357999999954666667778899988653 3221 111111 00000 00 00112
Q ss_pred ceEEEEE---------cCCCCceEEEecCCCeEEEEecccccccCCCCCCCC-ccccCCC-CcCCCcccceEEEEEc-CC
Q 011160 205 NLNAIAI---------DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-ADYFCPP-NLIGDEQVGITGLAFS-DQ 272 (492)
Q Consensus 205 ~v~~~~~---------~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~~~~~s-~~ 272 (492)
....+++ .++ +.++++-...+.|+.++. .+........+.. ...+..- ......-.....|+++ ++
T Consensus 336 ~P~giav~~n~~y~~dd~~-g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 413 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDE-YDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR 413 (433)
T ss_dssp SEEEEEEEECGGGTTSSCC-EEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred CCccEEEEccccccccCCC-CcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence 3567888 565 667777777888999885 3332111000000 0000000 0001112347889999 56
Q ss_pred CCeeEeec-CCcEEEEecC
Q 011160 273 SELLVSYN-DEFIYLFTQD 290 (492)
Q Consensus 273 ~~~l~~~~-~~~i~~~d~~ 290 (492)
+.++++-. +..|+.++++
T Consensus 414 g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 414 KCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEecC
Confidence 66555544 4578888764
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.26 E-value=0.0025 Score=58.16 Aligned_cols=206 Identities=12% Similarity=0.012 Sum_probs=118.2
Q ss_pred ccceEEEEEEcCCCCEE-EEecCCCeEEEEECCCCc---eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEec
Q 011160 60 HRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (492)
Q Consensus 60 h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 135 (492)
....+..|+|++.+..| .+-...+.|+.+++.... ....+..........+++.+. .+.++++-...+.|.+.++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~-~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEECT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec-CCceEEEECCCCeEEEEeC
Confidence 34567899999865544 454567889999886521 122222333456778888761 3444455556788888888
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC-CCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
........ +...-.....|++.|.+..++++-.. .+.|...++........... .-...+.|+++|+
T Consensus 189 ~g~~~~~l--~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~----------~l~~P~glavd~~ 256 (400)
T 3p5b_L 189 KGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE----------NIQWPNGITLDLL 256 (400)
T ss_dssp TTCSEEEE--EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS----------SCSCEEEEEEETT
T ss_pred CCCceEEE--EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC----------CCCceEEEEEEeC
Confidence 65433222 33334567899999976555555433 47888888875443322211 1124688999988
Q ss_pred CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CCcEEEEecCCC
Q 011160 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~i~~~d~~~~ 292 (492)
++.++++-...+.|..+|+........ . ..........++++.. +.++++-. .+.|..++..++
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~------------~-~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGNRKTI------------L-EDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCCEEE------------E-ECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSSC
T ss_pred CCEEEEEECCCCEEEEEeCCCCccEEE------------E-eCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCCC
Confidence 666666666778899999864321100 0 0001122345666633 33333333 457888886654
No 290
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.24 E-value=0.0048 Score=64.18 Aligned_cols=192 Identities=8% Similarity=0.013 Sum_probs=99.4
Q ss_pred cceEEEEEEcCC------CCEEEEecC-CCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEE
Q 011160 61 RGCVNTVSFNTD------GDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (492)
Q Consensus 61 ~~~v~~~~~s~~------~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 133 (492)
...|.|+++.|. ++++|.|.. |++|+|+++.+.+.+....-+......++.+.......+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 478999986 9999999998766544331122234445544432245678889999998766
Q ss_pred ecc--cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce-EEEE
Q 011160 134 QIL--ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIA 210 (492)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~ 210 (492)
.+. ++.....+...--..++.-..+...+...+++++. ....++.-+ +... +. +. ....+ ....
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~-~~l~--~s--~l-------~~~~v~~~~~ 699 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN-HKLV--FS--NV-------NLKEVNYMCP 699 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESS-SCEEEEESS-SSEE--EE--EB-------SSSCCCEEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECC-CCEEEEEcC-CceE--Ee--cc-------ChHHhceEec
Confidence 654 33332221111123455544454444334444443 344444433 2211 11 11 00012 2334
Q ss_pred EcCCC-CceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec
Q 011160 211 IDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (492)
Q Consensus 211 ~~p~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 280 (492)
|+... +.-++..+ ++.++|..+...+... ...+. -...+..++++|..+.++.+.
T Consensus 700 F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~------------~~~ip--L~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 700 LNSDGYPDSLALAN-NSTLTIGTIDEIQKLH------------IRTVP--LYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp ECCSSSTTEEEEEC-SSCEEEEEECCSSSEE------------EEEEE--CSSEEEEEEEEGGGTEEEEEE
T ss_pred cCcccCCCcEEEEc-CCceEEEEecccCCee------------EEEEe--CCCCceEEEEcCCCCEEEEEE
Confidence 53321 22344333 4569988875432100 00011 124678899999877655544
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=0.0025 Score=59.12 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=96.2
Q ss_pred eEEEEEEcCC--CCEEEEecCCCeEEEEECCCCceeeeeccC--cCcceEEEEe-------cCCCCCceEEeecCCC---
Q 011160 63 CVNTVSFNTD--GDILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKI-------MPFTDDRSIVTCAADG--- 128 (492)
Q Consensus 63 ~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~~l~~~~~dg--- 128 (492)
....|+|+|. ++++++....+.|++.|..++........+ .......++| .+ ++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC--CCCEEEEEeCCCCCc
Confidence 3568999983 444455444567888998876654333111 2235889999 99 888666665543
Q ss_pred ----cEEEEeccc-CCeee---eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC-------CCCc--------
Q 011160 129 ----QVRHAQILE-RGGVE---TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-------TGAA-------- 185 (492)
Q Consensus 129 ----~v~iw~~~~-~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~-------- 185 (492)
.|.+++... +.... ...+... .....++++|++..++++-..++.|..+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 255555333 12110 0112211 2446788999665777788888899999998 5553
Q ss_pred ---cce-eecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecc
Q 011160 186 ---TEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (492)
Q Consensus 186 ---~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~ 234 (492)
... +... .......++|+|++..++++-+....|+.++..
T Consensus 297 ~g~~~~l~~~~---------~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 297 PNTFKQLFTIA---------DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEECS---------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccceeEecC---------CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 011 1110 112357899999843255666677889886653
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.12 E-value=0.0034 Score=60.92 Aligned_cols=229 Identities=10% Similarity=0.006 Sum_probs=137.0
Q ss_pred eEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCc
Q 011160 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (492)
Q Consensus 120 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (492)
+|+.+ ....|+..++..........+. .-..+..|+|.+.+..++++-..++.|..+++........+..
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-------- 77 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-------- 77 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--------
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC--------
Confidence 34433 4567888998765433222222 2346789999997766667777789999999876543332221
Q ss_pred ceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEee
Q 011160 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (492)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 279 (492)
.......+++.+.+++++++-...+.|.+.++...... .+....-.....++++|...+|...
T Consensus 78 --g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~---------------~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 78 --GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ---------------VLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp --SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE---------------EEECSSCCCEEEEEEETTTTEEEEE
T ss_pred --CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE---------------EEEeCCCCCcccEEEccCCCeEEEe
Confidence 11235678888776677777777889999998643210 0111123456899999965555544
Q ss_pred c---CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCc
Q 011160 280 N---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (492)
Q Consensus 280 ~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~ 356 (492)
. ...|...+++... ...+...-. ....+++ +++++
T Consensus 141 D~g~~~~I~r~~~dG~~---------------------------------------~~~l~~~~~--~P~Glal-D~~~~ 178 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSE---------------------------------------RTTLVPNVG--RANGLTI-DYAKR 178 (628)
T ss_dssp ECSSSCEEEEEETTSCS---------------------------------------CEEEECSCS--SEEEEEE-ETTTT
T ss_pred CCCCCCEEEEEeCCCCc---------------------------------------eEEEECCCC--CcceEEE-ccccC
Confidence 4 3367777765421 111111111 2578888 88766
Q ss_pred EEEEe-eccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 357 YVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 357 ~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
.|+.+ ...+.|..+++..... ..+.........+++.. +.++++-...+.|...+..+++.
T Consensus 179 ~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 55554 4567899999865433 34433334456777765 44444544567788777665543
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0039 Score=61.93 Aligned_cols=162 Identities=12% Similarity=0.009 Sum_probs=100.3
Q ss_pred cceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCc---eeeeeccCcCcceEEEEecCCCCC-ceEEeecCCCcEEEEec
Q 011160 61 RGCVNTVSFNTDG-DILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQI 135 (492)
Q Consensus 61 ~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~ 135 (492)
...+..|+|.+.. .++++-...+.|+.+++.... ....+..........|++.+ .+ +++++-...+.|.+.++
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~--~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee--cCCcEEEEecCCCeEEEEeC
Confidence 4556799999854 455565667889989887531 11222233345567888887 55 44555566788999998
Q ss_pred ccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
........ +...-.....|++.|.+..++++-... +.|...++........+.. .-...+.|++++.
T Consensus 501 dG~~~~~l--~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~----------~l~~P~GLavD~~ 568 (791)
T 3m0c_C 501 KGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE----------NIQWPNGITLDLL 568 (791)
T ss_dssp TSSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS----------SCSCEEEEEEETT
T ss_pred CCCeEEEE--EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC----------CCCCceEEEEecC
Confidence 65433221 333445688999999764555554333 7888888875544333221 1124688999987
Q ss_pred CCceEEEecCCCeEEEEecccc
Q 011160 215 NANLFAVAGSDEYTRLYDIRKY 236 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~ 236 (492)
++.++++-...+.|..+++...
T Consensus 569 ~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 569 SGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSC
T ss_pred CCeEEEEeCCCCcEEEEecCCC
Confidence 5666666566778999988643
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.10 E-value=0.0036 Score=53.67 Aligned_cols=271 Identities=11% Similarity=0.118 Sum_probs=159.7
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
.+.+|.|-|+..+..+.+....- -+.-.+| ..+.||.-. ...+.++|+.+...+....+ ...|.--.|-.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~A----dsAIMnP--~~~ViALra-g~~LQiFnletK~klks~~~---~e~VvfWkWis 116 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS 116 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCC----SEEEECS--SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCEEEEEECS
T ss_pred CCCEEEEEECCCCCCcccccccc----ceeeeCC--CccEEEEec-CCeEEEechHHhhhhcceec---CCccEEEEecC
Confidence 34478889998876543331222 2344588 777776654 67899999999877766433 35777777776
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCC-CccceeecCCCCCCCcceeecceEEEEEcCCCCceEE-Eec------CCCeEEEEe
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAG------SDEYTRLYD 232 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~------~dg~v~i~d 232 (492)
.. .|+..+ +..|+.|++... .+.+.+..+... ....|..-..+++. ++++ +|- -.|.+.+|.
T Consensus 117 ~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L------~~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS 186 (365)
T 2xzh_A 117 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYS 186 (365)
T ss_dssp SS--EEEEEE-SSEEEEEESSTTCCCEEEEECCGGG------TTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEE
T ss_pred CC--eEEEEc-CCcEEEEcccCCCCCceeeecchhc------ccceEEEEEECCCC-CEEEEEeEeccCCccceeEEEEe
Confidence 54 344443 357999999753 444555443322 23467777888874 5544 432 236788888
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC---CCeeEeecC----CcEEEEecCCCC-CCCCCCCCCCC
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYND----EFIYLFTQDMGL-GPNPPPSSPVS 304 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~----~~i~~~d~~~~~-~~~~~~~~~~~ 304 (492)
.+.+. .....+|......+.+..+ .++++.+.. +++++.++.... ....+.
T Consensus 187 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~----- 245 (365)
T 2xzh_A 187 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----- 245 (365)
T ss_dssp TTTTE----------------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-----
T ss_pred ecccc----------------cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-----
Confidence 87653 2233444443333332221 123443332 478888885431 111111
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccCCceeec--cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe
Q 011160 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (492)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~ 382 (492)
.+....+.. ..+. .-.++.. ++.-..++.-+.-|.|++||+++|.++..-+
T Consensus 246 -------------------------kk~vdi~fppea~~D-FPVamqv-s~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 246 -------------------------KKAVDVFFPPEAQND-FPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp -------------------------CEEEEECCCTTCTTC-CEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred -------------------------cccceeeCCccccCC-ceEEEEe-cccCCEEEEEeCCcEEEEEEcccCcEEEEec
Confidence 111111111 1111 1345555 7777788888899999999999999998777
Q ss_pred cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
-....|..-+.+....=++.....|.|.--.++....
T Consensus 299 IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 299 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred cCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 6666676656555545566666778777777766543
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.05 E-value=0.0057 Score=54.13 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=101.8
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec--cCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 138 (492)
...+.++.|.+ +..++ ++..+.|.. ..+.|+.-.... ..+...+..+.+.+ ++..++++. +|.| |....+
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~g~v--~~S~Dg 150 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG--NGSAEMITN-VGAI--YRTKDS 150 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE--TTEEEEEET-TCCE--EEESST
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC--CCCEEEEeC-CccE--EEEcCC
Confidence 45788999986 44444 445564443 333343322221 12334577888876 676666554 5543 333222
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEE-EeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCc
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH-FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (492)
..............+..+++.|++ .+++++ ..|.+.. +|- .+..-..+... ....+..+.+.++ +.
T Consensus 151 G~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~---------~~~~~~~~~~~~~-g~ 217 (327)
T 2xbg_A 151 GKNWQALVQEAIGVMRNLNRSPSG-EYVAVS-SRGSFYSTWEP-GQTAWEPHNRT---------TSRRLHNMGFTPD-GR 217 (327)
T ss_dssp TSSEEEEECSCCCCEEEEEECTTS-CEEEEE-TTSSEEEEECT-TCSSCEEEECC---------SSSCEEEEEECTT-SC
T ss_pred CCCCEEeecCCCcceEEEEEcCCC-cEEEEE-CCCcEEEEeCC-CCCceeECCCC---------CCCccceeEECCC-CC
Confidence 221222233445678899999987 455555 4455443 332 12221111110 2235778889887 44
Q ss_pred eEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcC-CCcccceEEEEEcCCCCeeEeecCCcEEEEecCC
Q 011160 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 218 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
++ .++.+|.+++.+...++.-.. .... ......+..+++.+++.+++++.++.++ +..+.
T Consensus 218 ~~-~~~~~G~~~~s~~D~G~tW~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~Dg 278 (327)
T 2xbg_A 218 LW-MIVNGGKIAFSDPDNSENWGE------------LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDG 278 (327)
T ss_dssp EE-EEETTTEEEEEETTEEEEECC------------CBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESST
T ss_pred EE-EEeCCceEEEecCCCCCeeEe------------ccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCC
Confidence 44 445678777764221221000 0000 0112358889999988888888877763 33333
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.00 E-value=0.014 Score=56.62 Aligned_cols=201 Identities=11% Similarity=0.064 Sum_probs=113.6
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEE
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i 230 (492)
..+..++|.+.+..++++-...+.|+.+++........+.. .......+++.+.+++++++-+..+.|.+
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~----------~~~~p~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA----------QIAHPDGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC----------CCCCcCceEEecccCcEEEEeCCCCcEEE
Confidence 45678999986646666666678899999876543322211 11245678888765677777778889999
Q ss_pred EecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-C--CcEEEEecCCCCCCCCCCCCCCCccc
Q 011160 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D--EFIYLFTQDMGLGPNPPPSSPVSTRS 307 (492)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~ 307 (492)
.++..... ..+....-.....+++.|...+|..+. . ..|...+++..
T Consensus 419 ~~~~G~~~---------------~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~--------------- 468 (619)
T 3s94_A 419 TRLNGTMR---------------KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS--------------- 468 (619)
T ss_dssp EETTSCSC---------------EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------------
T ss_pred EeCCCCeE---------------EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC---------------
Confidence 98865321 011112234678999999744444433 2 35666665431
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEe-eccCeEEEEecCCCeeeEEEecCCc
Q 011160 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRH 386 (492)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~ 386 (492)
....+.. ......+.+++ ++++..|+.+ +..+.|..+++........+...-.
T Consensus 469 ------------------------~~~~l~~-~~l~~P~Glal-D~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~ 522 (619)
T 3s94_A 469 ------------------------DRVVLVN-TSLGWPNGLAL-DYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIP 522 (619)
T ss_dssp ------------------------SCEEEEC-SSCSCEEEEEE-ETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCC
T ss_pred ------------------------ccEEEEe-CCCCCCeeeEE-cccCCEEEEEECCCCEEEEEecCCCceEEEeccCCC
Confidence 1111111 11112567887 8766655554 4557899999854332222222222
Q ss_pred eeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 387 VVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
....|+...+ .++++-...+.|..-+..++.
T Consensus 523 ~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 523 HIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp SSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 3445565433 333443345667766766663
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.99 E-value=7.9e-05 Score=73.39 Aligned_cols=221 Identities=10% Similarity=0.011 Sum_probs=121.6
Q ss_pred CcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC----CccceeecCCCCCCCcceee
Q 011160 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG----AATELFTCRPIDDRRNYMTV 203 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~ 203 (492)
+.|+..++........ +. ....+..|+|.+.+..++++-...+.|+.+++... .....+.. ..
T Consensus 386 ~~I~~id~~~~~~~~~--~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~----------~~ 452 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------DI 452 (699)
T ss_dssp TC-CEECTTSCCEECC--SC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS----------CC
T ss_pred cceEEEeCCCCcceee--ec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC----------CC
Confidence 5677777766544322 22 23456788999876555555556688999998751 21111110 11
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--
Q 011160 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (492)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-- 281 (492)
.....|++.+.+++++++-...+.|.++++....... +..........++++|.+.+|+.+..
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~---------------l~~~~~~~P~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---------------LFREQGSKPRAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEE---------------ECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEE---------------EEeCCCCCcceEEEccCCCcEEEcccCC
Confidence 1245678886656666666677889999886542110 11111223467889987655554432
Q ss_pred -CcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEE-E
Q 011160 282 -EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV-V 359 (492)
Q Consensus 282 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l-~ 359 (492)
+.|.++++.... ...+... .......|++ +|++..| +
T Consensus 518 ~~~I~~~~~dG~~---------------------------------------~~~l~~~-~l~~PnGlav-d~~~~~LY~ 556 (699)
T 1n7d_A 518 PAKIKKGGLNGVD---------------------------------------IYSLVTE-NIQWPNGITL-DLLSGRLYW 556 (699)
T ss_dssp SCCEEBCCSSSCC---------------------------------------CCEESCS-SCSSCCCEEE-CTTTCCEEE
T ss_pred CCeEEEEeCCCCC---------------------------------------eeEEEeC-CCCCccEEEE-eccCCEEEE
Confidence 457766654321 0111000 0011467887 8875544 4
Q ss_pred EeeccCeEEEEecCCCeeeEEEec---CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 360 SGSDCGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 360 sg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
+-+..+.|.++++... ....+.. .......|++..+ .++++....+.|..++..+++.
T Consensus 557 aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 4456688999998643 3333321 1123455666543 4555555668899998766543
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.93 E-value=0.001 Score=57.63 Aligned_cols=162 Identities=10% Similarity=0.112 Sum_probs=103.4
Q ss_pred EEEEEcCCCCEEEEec-CCCeEEEEECCCCceeeeeccC----cC--cceEEEEe---cCCCCCceEEeec---------
Q 011160 65 NTVSFNTDGDILISGS-DDRRVILWDWKTERVKLSFHSG----HN--DNVFQAKI---MPFTDDRSIVTCA--------- 125 (492)
Q Consensus 65 ~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~~~l~~~~--------- 125 (492)
-+++|.+....|..++ ..++|..|+...+........+ .. ..+..|.| .| ++.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEEETTTTCTTS
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEcccccccccc
Confidence 4779987554555444 7899999998765433322222 11 14679999 58 777777543
Q ss_pred ----CCCcEEEEecc---cCCeeeeEEeecCC-----------CceEEEEEcCCCCcEEEEEcCC-CcEEEEeCCCCCcc
Q 011160 126 ----ADGQVRHAQIL---ERGGVETKLLGKHQ-----------GRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAAT 186 (492)
Q Consensus 126 ----~dg~v~iw~~~---~~~~~~~~~~~~~~-----------~~v~~i~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 186 (492)
.+..|..+|+. +++.+....+.... .....|+..++| +..++++.. +.|...+..... .
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC-E
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE-E
Confidence 25779999998 66665544443221 247899999999 566778877 888777766542 2
Q ss_pred ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
..+........ .....+.|+++|+ ++.|++....|.+..+|+.+
T Consensus 172 ~~~~~~~~~~~----~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGG----QRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSS----SCCSCSEEEEETT-TTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcc----cccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCC
Confidence 22211111000 2234678999998 55666655599999999873
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.89 E-value=0.0027 Score=55.55 Aligned_cols=188 Identities=11% Similarity=0.179 Sum_probs=111.2
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCC--CCCc---eEEeec-C--CCcEEEEecccC-Ceee
Q 011160 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF--TDDR---SIVTCA-A--DGQVRHAQILER-GGVE 142 (492)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~---~l~~~~-~--dg~v~iw~~~~~-~~~~ 142 (492)
...+++.....+-+.+||+ +|+.+..+ .. +.++.+..-|. -.++ ++++.. . +++|.+|++... ..+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 3456666667788999999 78887776 22 45666666550 0122 233333 3 578999987421 2222
Q ss_pred eEEeec------CC-CceEEEEE--cCC-CCcEEEEEcCCCcEEEEeCCC---C----CccceeecCCCCCCCcceeecc
Q 011160 143 TKLLGK------HQ-GRAHKLAI--EPG-SPHVFYTCGEDGLVQHFDLRT---G----AATELFTCRPIDDRRNYMTVVN 205 (492)
Q Consensus 143 ~~~~~~------~~-~~v~~i~~--~~~-~~~~l~~~~~dg~i~iwd~~~---~----~~~~~~~~~~~~~~~~~~~~~~ 205 (492)
. +.. .. ..+..+++ +|. +..++++...+|.+..|++.. + +.+..+.. ...
T Consensus 115 ~--i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----------gsq 181 (355)
T 3amr_A 115 S--MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----------NSQ 181 (355)
T ss_dssp E--CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----------SSC
T ss_pred e--ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----------CCC
Confidence 2 211 11 56677777 674 434677888889999998832 2 33344432 235
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccc-----cccCCCCCCCCccccCCCCcCCCcccceEEEEE--cCCCC-eeE
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-----KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF--SDQSE-LLV 277 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~-~l~ 277 (492)
+-.++..+. ...|+.+-++..|..|+.+-. +.+... -...-...+..|++ .++++ +|+
T Consensus 182 ~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-------------~~g~l~aDvEGLai~~~~~g~gyLi 247 (355)
T 3amr_A 182 TEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-------------DGRHLTRDIEGLTIYYAADGKGYLM 247 (355)
T ss_dssp EEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-------------SSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred cceEEEcCC-CCeEEEecccceEEEEeCCcCCCCCceEEEEe-------------cCCccccCcceEEEEecCCCCEEEE
Confidence 778888887 567888888877766665421 111000 01112235777877 45555 666
Q ss_pred eec--CCcEEEEecC
Q 011160 278 SYN--DEFIYLFTQD 290 (492)
Q Consensus 278 ~~~--~~~i~~~d~~ 290 (492)
+++ ++...+|+..
T Consensus 248 vSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 248 ASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEGGGTEEEEEESS
T ss_pred EEcCCCCEEEEEECC
Confidence 665 4579999986
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0036 Score=54.78 Aligned_cols=191 Identities=13% Similarity=0.204 Sum_probs=111.0
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC----CC---E-EEEe
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GD---I-LISG 79 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~---~-l~s~ 79 (492)
|...++++..+.+-+.+||+ +|+++ +.+.. +.++.+..-|. |+ + +++.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l---------------------~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~ 93 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKML---------------------HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASN 93 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEE---------------------EEECC--SCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEE---------------------EEccC--CCcccEEEecccccCCceEeEEEEeC
Confidence 34455666667788999999 58877 34432 45566655552 22 2 3333
Q ss_pred cC--CCeEEEEECC--CCceeeeecc-----CcC-cceEEEEe--cCCCCC-ceEEeecCCCcEEEEecccC---Ce--e
Q 011160 80 SD--DRRVILWDWK--TERVKLSFHS-----GHN-DNVFQAKI--MPFTDD-RSIVTCAADGQVRHAQILER---GG--V 141 (492)
Q Consensus 80 ~~--d~~i~iwd~~--~~~~~~~~~~-----~~~-~~v~~~~~--~~~~~~-~~l~~~~~dg~v~iw~~~~~---~~--~ 141 (492)
-. +++|++|++. ++. +..+-. +.. ..++.+++ +|. .+ .++++...+|.+..|++... .. .
T Consensus 94 R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~-~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 94 RSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQK-TGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp CSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCC-CCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 34 5789999773 333 333311 011 56777787 662 23 36788888899999998432 11 1
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-----CCccceeecCCCCCCCcceeecceEEEEE--cCC
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRRNYMTVVNLNAIAI--DPR 214 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~ 214 (492)
..+.+. -...+..+...+.. ..|+.+-.+.-|..++.+. ++.+..+.... -...+..|++ .++
T Consensus 172 lVR~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~--------l~aDvEGLai~~~~~ 241 (355)
T 3amr_A 172 KVRAFK-MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH--------LTRDIEGLTIYYAAD 241 (355)
T ss_dssp EEEEEE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS--------BCSCEEEEEEEECGG
T ss_pred EEEEec-CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCc--------cccCcceEEEEecCC
Confidence 112233 23578888888877 4678888886677777542 22222221100 1124566666 444
Q ss_pred CCceEEEec-CCCeEEEEecc
Q 011160 215 NANLFAVAG-SDEYTRLYDIR 234 (492)
Q Consensus 215 ~~~~l~~~~-~dg~v~i~d~~ 234 (492)
+..+|++++ .+....+||..
T Consensus 242 g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 242 GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp GCEEEEEEEGGGTEEEEEESS
T ss_pred CCEEEEEEcCCCCEEEEEECC
Confidence 333555554 67799999986
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.78 E-value=0.0014 Score=56.78 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcC--CCcccceEEEEE---cCCCCeeEeec
Q 011160 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAF---SDQSELLVSYN 280 (492)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~---s~~~~~l~~~~ 280 (492)
..++.|++.++.++++.-..+.|..|+...+..... . ...+. ......+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~---------~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V---------IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C---------CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e---------cCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 356889887555556555899999999875432111 0 11111 112235689999 68888877533
Q ss_pred --------------CCcEEEEecC---CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccc---
Q 011160 281 --------------DEFIYLFTQD---MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR--- 340 (492)
Q Consensus 281 --------------~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 340 (492)
+..+..||+. +++.... ..+....
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~------------------------------------~dL~~~~~~~ 128 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS------------------------------------VNFEKVQDEF 128 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE------------------------------------EESHHHHHHH
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEE------------------------------------ecCccccccc
Confidence 2458899988 5422111 0111100
Q ss_pred ------cceeeeeEEeecCCCcEEEEeecc-CeEEEEecCCCeeeEEEecC------CceeEEEeecCCCCeEEEeeCCC
Q 011160 341 ------NCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVIEAD------RHVVNCIEPHPHSTVLASSGIES 407 (492)
Q Consensus 341 ------~~~~v~~~~~~s~~g~~l~sg~~d-g~i~iwd~~~~~~~~~~~~h------~~~v~~~~~s~~~~~l~s~~~dg 407 (492)
.......++. .++|+..++++.. +.|...+.. |+.+..+... ....+.|+++|++..|+.....|
T Consensus 129 ~~~~g~~~~~~nDvav-D~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g 206 (334)
T 2p9w_A 129 EKKAGKRPFGVVQSAQ-DRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR 206 (334)
T ss_dssp HHHHSSCCEEEEEEEE-CTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred cccccccccCCceeEE-CCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence 1112678888 9999999999888 888887764 4333333211 11267999999999888876699
Q ss_pred CEEEeccCC
Q 011160 408 DIKILTPNA 416 (492)
Q Consensus 408 ~i~iw~~~~ 416 (492)
.|..+|+..
T Consensus 207 ~L~~fD~~~ 215 (334)
T 2p9w_A 207 ALTAFDVSK 215 (334)
T ss_dssp SEEEEECSS
T ss_pred eEEEEcCCC
Confidence 999999874
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.77 E-value=0.0075 Score=53.46 Aligned_cols=141 Identities=10% Similarity=0.121 Sum_probs=77.0
Q ss_pred CCCcEEEEecccCC-eeeeEEeec-----CCCceEEEEEcC--CCC-cEEEEEcC--CCcEEEEeCCCCCccce-eecCC
Q 011160 126 ADGQVRHAQILERG-GVETKLLGK-----HQGRAHKLAIEP--GSP-HVFYTCGE--DGLVQHFDLRTGAATEL-FTCRP 193 (492)
Q Consensus 126 ~dg~v~iw~~~~~~-~~~~~~~~~-----~~~~v~~i~~~~--~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~ 193 (492)
.+|.|.++|..+.. ......+.+ .......|.+.+ ++. +++++-.. +.+|.+|++........ +....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68899999987432 122222322 234667777766 343 24444333 46788887765432222 11111
Q ss_pred CCCCCcceeecceEEEEEcCCCCceEEEec-----------------CCCeEEEEecccccccCCCCCCCCccccCCCCc
Q 011160 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAG-----------------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (492)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-----------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (492)
.. .-...+.+.+.++ +.+.++.. ..|.|.-++...- ..
T Consensus 161 g~------~~~~pND~~v~~~-G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~------------------~~ 215 (355)
T 3sre_A 161 HK------LLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV------------------RV 215 (355)
T ss_dssp CT------TCSSEEEEEEEET-TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC------------------EE
T ss_pred cC------CCCCCceEEEeCC-CCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE------------------EE
Confidence 00 2235788999987 56666543 1244444443211 01
Q ss_pred CCCcccceEEEEEcCCCCeeEeec--CCcEEEEecCC
Q 011160 257 IGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (492)
Q Consensus 257 ~~~~~~~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~ 291 (492)
....-...+.++|+|+++.|+.+. ...|+.|++..
T Consensus 216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 111234578999999998877665 45799999863
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.74 E-value=0.021 Score=51.07 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=59.0
Q ss_pred cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEe---ecCCCceEEEEEcCC---CCcEEEEEcCC-----C
Q 011160 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPG---SPHVFYTCGED-----G 173 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~---~~~~~~v~~i~~~~~---~~~~l~~~~~d-----g 173 (492)
.....|+|.| +++++++ ...|.|.+++ .+.......+ .........|+++|+ +..+.++-... +
T Consensus 31 ~~P~~ia~~p--dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLP--DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECT--TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcC--CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3567899999 9885554 5569998888 3332111111 122356789999998 43444444332 5
Q ss_pred cEEEEeCCCCCcc---ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 174 LVQHFDLRTGAAT---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 174 ~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
.|..|+...+... ..+...+...... | ....++|.|+ +.++++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~--h--~~~~l~~~pd-G~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGL--H--SGGRIAFGPD-GMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCC--C--CCCCEEECTT-SCEEEEC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCC--c--CCceEEECCC-CCEEEEE
Confidence 6888887654211 1111111000011 1 2357999998 5555553
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.69 E-value=0.027 Score=50.48 Aligned_cols=271 Identities=11% Similarity=0.120 Sum_probs=162.8
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
....|.|-|+..+..+.+.... --+.-.+| ..+.|+.-. ..++.|+|+.+...+....+ ...|.--.|-.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP--~~~iiALra-g~~lQiFnle~K~klks~~~---~e~VvfWkWis 115 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS 115 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC----CSEEEECS--SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEEEE
T ss_pred CCCeEEEEECCCCCcceecccc----cceeeeCC--CCcEEEEec-CCeEEEEchHHhhhhcceec---CCCceEEEecC
Confidence 3457888999886654332111 23455678 677776654 67899999998877765333 24566667765
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCC-CccceeecCCCCCCCcceeecceEEEEEcCCCCceEE-Eec------CCCeEEEEe
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAG------SDEYTRLYD 232 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~------~dg~v~i~d 232 (492)
.. .|+..+ +..|+.|++... .+.+.+..+... ....|..-..+++ .++++ +|- -.|.+.+|.
T Consensus 116 ~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 116 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp TT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------TTCEEEEEEECTT-SSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CC--eEEEEc-CCeeEEecccCCCCchhheecchhc------ccceEEEEEECCC-CCeEEEEeecccCCcccceEEEee
Confidence 54 344444 357999999753 444555443322 2346777888888 45554 332 246788888
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCC---CeeEeecC----CcEEEEecCCCC-CCCCCCCCCCC
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---ELLVSYND----EFIYLFTQDMGL-GPNPPPSSPVS 304 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~----~~i~~~d~~~~~-~~~~~~~~~~~ 304 (492)
...+. .....+|......+.+..+. .+++.+.. +++++.++.... ....+.
T Consensus 186 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~----- 244 (494)
T 1bpo_A 186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----- 244 (494)
T ss_dssp STTCC----------------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-----
T ss_pred ccccc----------------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-----
Confidence 87653 23344555444444433221 23443332 478999886531 111111
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccCCcee-ec-cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe
Q 011160 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (492)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~ 382 (492)
.+....+ .. ..+. .-.++.. ++.-..++.-+.-|.|++||+.++.++..-+
T Consensus 245 -------------------------kk~vdv~fppe~~~D-FPvamqv-s~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 245 -------------------------KKAVDVFFPPEAQND-FPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp -------------------------CEEEECCCCTTSTTC-CEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred -------------------------ceeeeeeCCcccccC-ceeEEEe-cccCCEEEEEecCceEEEEecccceeeeeec
Confidence 0001101 01 1111 1345555 7777788888899999999999999998777
Q ss_pred cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCC
Q 011160 383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (492)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (492)
-....|..-+......=++.....|.|.--.++....
T Consensus 298 Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 298 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred ccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 6666676666666655666666888877777766543
No 305
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.0017 Score=59.98 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=93.7
Q ss_pred ceEEEEEcC-CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC--
Q 011160 205 NLNAIAIDP-RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (492)
Q Consensus 205 ~v~~~~~~p-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-- 281 (492)
....++++| +++ .|+++...+.|+.+|+..+..... . ........++|++++++|+.+..
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~---------------~-~~~~~P~~ia~d~~G~~lyvad~~~ 200 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTV---------------Y-SGLSKVRTICWTHEADSMIITNDQN 200 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEE---------------E-CCCSCEEEEEECTTSSEEEEEECCS
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEE---------------e-cCCCCcceEEEeCCCCEEEEEeCCC
Confidence 357789998 434 455544448899999876543211 0 12345789999999995555542
Q ss_pred C----cEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecC-CCc
Q 011160 282 E----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCE 356 (492)
Q Consensus 282 ~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~g~ 356 (492)
+ .+.+++.... ......+..... ...+++ +| +|.
T Consensus 201 ~~~~~~v~~~~~~g~-------------------------------------~~~~~~l~~~~~---p~giav-dp~~g~ 239 (430)
T 3tc9_A 201 NNDRPNNYILTRESG-------------------------------------FKVITELTKGQN---CNGAET-HPINGE 239 (430)
T ss_dssp CTTSEEEEEEEGGGT-------------------------------------SCSEEEEEECSS---CCCEEE-CTTTCC
T ss_pred CcccceEEEEeCCCc-------------------------------------eeeeeeeccCCC---ceEEEE-eCCCCE
Confidence 1 2333443221 000012221111 467777 99 777
Q ss_pred EEEEeeccCeEEEEecCCCeeeEEEec-CCceeEEEeecCCCCe-EEEeeCCCCEEEeccCC
Q 011160 357 YVVSGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTV-LASSGIESDIKILTPNA 416 (492)
Q Consensus 357 ~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~ 416 (492)
++++-..++.|+.++...+........ .......++|+|++++ +++-...+.|..++.+.
T Consensus 240 lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 240 LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 777777788999999987765322222 2235789999999995 44545677898887764
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.60 E-value=0.028 Score=48.35 Aligned_cols=206 Identities=12% Similarity=0.117 Sum_probs=118.4
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
|+|--+|..+.+|.-. ..++.|+|+++.+.+ +.+.- ...|.-=.|-.+. .|+-.+.
T Consensus 70 dsAIMnP~~~ViALra-g~~LQiFnletK~kl---------------------ks~~~-~e~VvfWkWis~~-~L~lVT~ 125 (365)
T 2xzh_A 70 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKM---------------------KAHTM-TDDVTFWKWISLN-TVALVTD 125 (365)
T ss_dssp SEEEECSSSSEEEEEE-TTEEEEEETTTTEEE---------------------EEEEC-SSCEEEEEECSSS-EEEEEES
T ss_pred ceeeeCCCccEEEEec-CCeEEEechHHhhhh---------------------cceec-CCccEEEEecCCC-eEEEEcC
Confidence 4556678888777765 568999999876544 11111 3466666775443 4444443
Q ss_pred CCeEEEEECCCCceeeeeccCc----CcceEEEEecCCCCCceEEeecC-------CCcEEEEecccCCeeeeEEeecCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCAA-------DGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
..|.-|++............| ...|...+.++ +.++++..+- .|.+.+|..+.+.. +.+.+|.
T Consensus 126 -taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~--~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s---Q~ieGha 199 (365)
T 2xzh_A 126 -NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA--KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---QPIEGHA 199 (365)
T ss_dssp -SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT--TSCEEEEEEEEEETTEEEEEEEEEETTTTEE---EEECCSE
T ss_pred -CcEEEEcccCCCCCceeeecchhcccceEEEEEECC--CCCEEEEEeEeccCCccceeEEEEeeccccc---ceeeeee
Confidence 579999997543333332333 34677777777 8888775442 37788888765432 3377776
Q ss_pred CceEEEEEcCC--CCcEEEEEcC---CCcEEEEeCCCC-CccceeecC--CCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 151 GRAHKLAIEPG--SPHVFYTCGE---DGLVQHFDLRTG-AATELFTCR--PIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 151 ~~v~~i~~~~~--~~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
.....+.+.-+ ...+|+.+.. .+.+++.++... .....+... ...-.+. ....-..++..++. -..++.-
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe-a~~DFPVamqvs~k-ygviyvi 277 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEK-HDVVFLI 277 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT-CTTCCEEEEEEETT-TTEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc-ccCCceEEEEeccc-CCEEEEE
Confidence 55444433211 1123333332 258889888543 111111100 0000000 01223457778876 4588888
Q ss_pred cCCCeEEEEeccccccc
Q 011160 223 GSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 223 ~~dg~v~i~d~~~~~~~ 239 (492)
+.-|.+++||+.++...
T Consensus 278 TK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCI 294 (365)
T ss_dssp ETTSEEEEEETTTCCEE
T ss_pred eCCcEEEEEEcccCcEE
Confidence 99999999999998654
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.54 E-value=0.044 Score=48.98 Aligned_cols=68 Identities=10% Similarity=0.227 Sum_probs=44.0
Q ss_pred eeeEEeec------CCCcEEEEeeccCeEEEEecCCCeeeEE--E-ecCCceeEEEeecCCCCeEEEee-CCCCEEEecc
Q 011160 345 VKGVNFFG------PKCEYVVSGSDCGRIFIWKKKGGELIRV--I-EADRHVVNCIEPHPHSTVLASSG-IESDIKILTP 414 (492)
Q Consensus 345 v~~~~~~s------~~g~~l~sg~~dg~i~iwd~~~~~~~~~--~-~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~ 414 (492)
...+.|+. .+|+++++.-..+.|...++..++.+.. + ......+..+++.|||.++++.. .+| +||.+
T Consensus 273 p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 273 VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 56677632 2577888777788888888876654432 2 22234689999999999766543 334 44444
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.50 E-value=0.014 Score=52.18 Aligned_cols=239 Identities=10% Similarity=-0.003 Sum_probs=114.0
Q ss_pred CCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC---CCEEEEecC
Q 011160 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---GDILISGSD 81 (492)
Q Consensus 5 ~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~ 81 (492)
.+.|+++++++-. +|.|++++. +|+ . .+..+. .+.........|+|+|+ +..|..+..
T Consensus 35 a~~pdG~l~V~e~-~g~I~~~d~-~G~-~-------------~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 35 APLGGGRYLVTER-PGRLVLISP-SGK-K-------------LVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp EEEETTEEEEEET-TTEEEEECS-SCE-E-------------EEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEcCCCeEEEEeC-CCEEEEEeC-CCc-e-------------Eeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 3556777555544 588888863 343 1 000111 11122345789999997 444444332
Q ss_pred ----C----CeEEEEECCCC--c-----eeee-eccCcCcceEEEEecCCCCCceEEeecCC-------------CcEEE
Q 011160 82 ----D----RRVILWDWKTE--R-----VKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------------GQVRH 132 (492)
Q Consensus 82 ----d----~~i~iwd~~~~--~-----~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------------g~v~i 132 (492)
+ +.|..|+.... . .+.. +..........|+|.| +|.++++.+.. |.|.-
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p--DG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP--DGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT--TSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC--CCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 2 56777776644 1 1111 2111112346799999 99876664321 34444
Q ss_pred EecccCCe------eeeEEeecCCCceEEEEEcC-CCCcEEEEEcCCC---cEEEEeCCCCCccc----eee--cCCC-C
Q 011160 133 AQILERGG------VETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDG---LVQHFDLRTGAATE----LFT--CRPI-D 195 (492)
Q Consensus 133 w~~~~~~~------~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg---~i~iwd~~~~~~~~----~~~--~~~~-~ 195 (492)
++....-. .......++ .....++|+| ++ .++++-.... .|.+. ..+.... .-. .... .
T Consensus 174 i~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g-~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~ 249 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASG-VMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVD 249 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTC-CEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCC
T ss_pred EcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCC-CEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcC
Confidence 44322100 001112233 3456899999 55 4544432211 23332 2222100 000 0000 0
Q ss_pred CCCcc-eeecceEEEEEc-------CCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEE
Q 011160 196 DRRNY-MTVVNLNAIAID-------PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (492)
Q Consensus 196 ~~~~~-~~~~~v~~~~~~-------p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (492)
....+ ........++|. .+ +.++++....+.|...++........ ...+.......+..+
T Consensus 250 p~~~~~~~~~ap~G~~~y~g~~fp~~~-G~l~v~~~~~~~v~~~~~~~~g~~~~-----------~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 250 PVIDTGSETWAPSGASFVHGDMFPGLR-GWLLIACLRGSMLAAVNFGDNMEVRK-----------ISTFFKNVFGRLRDV 317 (354)
T ss_dssp CSEECTTCCCCEEEEEECCSSSCGGGT-TEEEEEETTTTEEEEEEECGGGCEEE-----------EEEECTTTSCCEEEE
T ss_pred CEeecCCCCcCCcceEEECCCCCcccC-CcEEEEEcCCCEEEEEEECCCCcccc-----------eeeeccCCCCCeeEE
Confidence 00000 012346778883 33 56777777778888888865321100 001111123568899
Q ss_pred EEcCCCCeeEeec
Q 011160 268 AFSDQSELLVSYN 280 (492)
Q Consensus 268 ~~s~~~~~l~~~~ 280 (492)
++.|+|.+.++..
T Consensus 318 ~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 318 VIDDDGGILISTS 330 (354)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999997766653
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.49 E-value=0.05 Score=48.62 Aligned_cols=115 Identities=13% Similarity=0.189 Sum_probs=63.6
Q ss_pred eEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeee------ccCcCcceEEEEecCCCC---CceEEeec-C-----
Q 011160 63 CVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSF------HSGHNDNVFQAKIMPFTD---DRSIVTCA-A----- 126 (492)
Q Consensus 63 ~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~---~~~l~~~~-~----- 126 (492)
.-..|+|.|+|+ ++++ ...|.|++++.. +.....+ ..........|+++| + +..|+.+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP--DFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT--THHHHCEEEEEEEEECSSS
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC--CCCCCCEEEEEEeCCCCCC
Confidence 457999999999 6655 457899999853 3321111 111234578999998 6 45555442 2
Q ss_pred --CCcEEEEecccCC--ee-eeEEeec------CCCceEEEEEcCCCCcEEEEEcC-------------CCcEEEEeCCC
Q 011160 127 --DGQVRHAQILERG--GV-ETKLLGK------HQGRAHKLAIEPGSPHVFYTCGE-------------DGLVQHFDLRT 182 (492)
Q Consensus 127 --dg~v~iw~~~~~~--~~-~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~~-------------dg~i~iwd~~~ 182 (492)
...|..|++.... .. ....+.. .......|+|.|+| .++++.+. .|.|.-++...
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 2346556654321 11 1111111 11234679999999 55555433 24566666553
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.48 E-value=0.022 Score=49.62 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=80.4
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCc---eeeeeccCcCcceEEEEecCCCCCceEEeecCC-----CcEEEEecccC
Q 011160 72 DGDILISGSDD-----RRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILER 138 (492)
Q Consensus 72 ~~~~l~s~~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~ 138 (492)
++.+++.|+.+ ..+.+||..+.. -...-.......-.+++.. ++..++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 56777777754 468899988765 2211100111111122222 66777777654 35888888776
Q ss_pred CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 139 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
.......+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+....-.... .. .....+.+
T Consensus 139 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r------~~~~~~~~-- 205 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT--KR------SGAGVALL-- 205 (301)
T ss_dssp EEEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS--CC------BSCEEEEE--
T ss_pred eEEECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc--cc------ccceEEEE--
Confidence 65443222211111222222 44 577777654 458899998876543321110 01 11122333
Q ss_pred CCCceEEEecCC-----CeEEEEecccccc
Q 011160 214 RNANLFAVAGSD-----EYTRLYDIRKYKW 238 (492)
Q Consensus 214 ~~~~~l~~~~~d-----g~v~i~d~~~~~~ 238 (492)
++.+++.|+.+ ..+.+||+.+.+.
T Consensus 206 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 206 -NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp -TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred -CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 25677777764 4688999987654
No 311
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.47 E-value=0.15 Score=53.32 Aligned_cols=177 Identities=8% Similarity=0.058 Sum_probs=97.2
Q ss_pred EEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec----------CCCeEEEEecccccccCCCCC
Q 011160 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----------SDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~v~i~d~~~~~~~~~~~~ 244 (492)
|++.|..+.+.+..+...+. .....+..+.|..+...++++|+ ..|.|.+|++..+++...
T Consensus 809 i~lidp~t~~~i~~~~l~~n------E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv--- 879 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQN------EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV--- 879 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTT------EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE---
T ss_pred EEEEeCCCCeEEEEEeCCCC------cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE---
Confidence 55666555554444433211 12223344445443346788776 458899999864332110
Q ss_pred CCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 011160 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (492)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492)
......+.+++++-- +| +|+++-..++++|++...+
T Consensus 880 -----------~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~------------------------------- 915 (1158)
T 3ei3_A 880 -----------AEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEK------------------------------- 915 (1158)
T ss_dssp -----------EEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTS-------------------------------
T ss_pred -----------EEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCc-------------------------------
Confidence 011124567777643 34 5666667889999987521
Q ss_pred CCCccccCCceeec-cccceeeeeEEeecCCCcEEEEeeccCeEEEEec--CCCeeeEEEe-cCCceeEEEeecCCCCeE
Q 011160 325 ANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELIRVIE-ADRHVVNCIEPHPHSTVL 400 (492)
Q Consensus 325 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~--~~~~~~~~~~-~h~~~v~~~~~s~~~~~l 400 (492)
.++ ... +-....+..+ ...+.+++.|..-..|.++.. ...++...-+ .+...++++.+-.++ .+
T Consensus 916 -------~L~-~~~~~~~~i~~~~l---~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~ 983 (1158)
T 3ei3_A 916 -------ELR-TECNHYNNIMALYL---KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NF 983 (1158)
T ss_dssp -------CEE-EEEEECCCSCEEEE---EEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EE
T ss_pred -------eEE-EEeeccccEEEEEE---eccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cE
Confidence 111 111 0001011233 234778999887777776543 3444332222 244568888887554 67
Q ss_pred EEeeCCCCEEEeccCC
Q 011160 401 ASSGIESDIKILTPNA 416 (492)
Q Consensus 401 ~s~~~dg~i~iw~~~~ 416 (492)
+.+..+|.|.+.....
T Consensus 984 l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 984 LGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEETTSEEEEEEECT
T ss_pred EEEcCCCcEEEEecCC
Confidence 7788899999987755
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.39 E-value=0.058 Score=46.97 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=55.3
Q ss_pred CCEEEEecCC----CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC-----CcEEEEecccCCeeee
Q 011160 73 GDILISGSDD----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGVET 143 (492)
Q Consensus 73 ~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~ 143 (492)
+.+++.|+.+ ..+.+||..+..-...-.......-.+++.. ++..++.|+.+ ..+.+||..+......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455666543 3578889887653221100111111122222 67777777754 3588888877655433
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCCC-----cEEEEeCCCCCcc
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAAT 186 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 186 (492)
..+.........+.+ ++ .+++.|+.++ .+.+||+.+.+..
T Consensus 93 ~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp CCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 222211111122222 34 5777777553 4778888776544
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.34 E-value=0.066 Score=48.08 Aligned_cols=206 Identities=12% Similarity=0.113 Sum_probs=118.3
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
|+|--+|..+.+|.-. ..++.|+|+++.+.+ +.+.- ...|.-=.|-.+ +.|+-.+.
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnle~K~kl---------------------ks~~~-~e~VvfWkWis~-~~l~lVT~ 124 (494)
T 1bpo_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKM---------------------KAHTM-TDDVTFWKWISL-NTVALVTD 124 (494)
T ss_dssp SEEEECSSSSCEEEEE-TTEEEEEETTTTEEE---------------------EEEEC-SSCCCEEEEEET-TEEEEECS
T ss_pred ceeeeCCCCcEEEEec-CCeEEEEchHHhhhh---------------------cceec-CCCceEEEecCC-CeEEEEcC
Confidence 4555677777777665 568888888865544 11111 234555566433 34554443
Q ss_pred CCeEEEEECCCCceeeeeccCc----CcceEEEEecCCCCCceEEeecC-------CCcEEEEecccCCeeeeEEeecCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCAA-------DGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
..|.-|++............| ...|...+.++ +.++++..+- .|.+.+|..+.+.. +.+.+|.
T Consensus 125 -taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~--~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s---Q~ieGha 198 (494)
T 1bpo_A 125 -NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA--KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---QPIEGHA 198 (494)
T ss_dssp -SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT--TSSEEEEEEEEEETTEEEEEEEEEESTTCCE---EEECCSE
T ss_pred -CeeEEecccCCCCchhheecchhcccceEEEEEECC--CCCeEEEEeecccCCcccceEEEeecccccc---chheeee
Confidence 579999997543333332333 34677777787 8888875442 47788888765433 3377776
Q ss_pred CceEEEEEcCC--CCcEEEEEcC---CCcEEEEeCCCC-Cccceeec--CCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 151 GRAHKLAIEPG--SPHVFYTCGE---DGLVQHFDLRTG-AATELFTC--RPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 151 ~~v~~i~~~~~--~~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
.....+.+.-+ ...+|+.+.. .+.++|.++... .....+.. ....-.+. ....-..++..++. -..++.-
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe-~~~DFPvamqvs~k-ygviyvi 276 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEK-HDVVFLI 276 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT-STTCCEEEEEEETT-TTEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc-cccCceeEEEeccc-CCEEEEE
Confidence 65554444321 1123444433 278999988643 11111100 00000000 01223467888887 5588888
Q ss_pred cCCCeEEEEeccccccc
Q 011160 223 GSDEYTRLYDIRKYKWD 239 (492)
Q Consensus 223 ~~dg~v~i~d~~~~~~~ 239 (492)
+.-|.+.+||+.++..+
T Consensus 277 TK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCI 293 (494)
T ss_dssp ETTSEEEEEETTTCCEE
T ss_pred ecCceEEEEecccceee
Confidence 99999999999998654
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.30 E-value=0.086 Score=47.03 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--eeee--ccCcCcceEEEEecCCCC---CceEEeecC-C-----Cc
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSF--HSGHNDNVFQAKIMPFTD---DRSIVTCAA-D-----GQ 129 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~--~~~~~~~v~~~~~~~~~~---~~~l~~~~~-d-----g~ 129 (492)
.-..++|.|+|+++++ ...|.|++++ ++.. +..+ ..........|+|+| + +..|+.+.. . +.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEecCCCCCccE
Confidence 4569999999996665 4569999998 3432 1111 112235688999999 7 445554433 2 56
Q ss_pred EEEEecccCCe----eeeEEee---cCCCceEEEEEcCCCCcEEEEEc
Q 011160 130 VRHAQILERGG----VETKLLG---KHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 130 v~iw~~~~~~~----~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
|..++...... .....+. ........++|.|+| .+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence 77777754321 1111122 111234689999999 5655543
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.26 E-value=0.044 Score=48.55 Aligned_cols=144 Identities=13% Similarity=0.042 Sum_probs=80.4
Q ss_pred CcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEe-ecCccceEEEEEEcC--CCC-EEEEe-cC--CCeEEEEEC
Q 011160 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAK-LDKHRGCVNTVSFNT--DGD-ILISG-SD--DRRVILWDW 90 (492)
Q Consensus 18 ~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~--~~~-~l~s~-~~--d~~i~iwd~ 90 (492)
.+|.|.++|.++.... ..++..... +.........|.+.+ ++. +|+.+ .. +.+|.+|++
T Consensus 81 ~~G~I~~~d~~~~~~~--------------~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~ 146 (355)
T 3sre_A 81 KSGKILLMDLNEKEPA--------------VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKF 146 (355)
T ss_dssp -CCEEEEEETTSSSCC--------------EEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEE
T ss_pred CCCeEEEEecCCCCCc--------------eEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEE
Confidence 6888999998732111 012221111 222334556666655 453 34333 22 567888887
Q ss_pred CCCce----eeeeccCcCcceEEEEecCCCCCceEEeec-----------------CCCcEEEEecccCCeeeeEEeecC
Q 011160 91 KTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-----------------ADGQVRHAQILERGGVETKLLGKH 149 (492)
Q Consensus 91 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----------------~dg~v~iw~~~~~~~~~~~~~~~~ 149 (492)
..+.. +..+....-...+.+.+.+ +|.+.++.. ..|.|..++. ++ ... +...
T Consensus 147 d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~--~~~~ 219 (355)
T 3sre_A 147 QEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRV--VAEG 219 (355)
T ss_dssp ETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEE--EEEE
T ss_pred ECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEE--eecC
Confidence 65422 2222111234678999998 888777654 1244444443 32 211 2223
Q ss_pred CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC
Q 011160 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (492)
Q Consensus 150 ~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (492)
-...+.++|+|++..+.++-+..+.|..|++..
T Consensus 220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 345789999999966666667788999999864
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.22 E-value=0.048 Score=47.67 Aligned_cols=150 Identities=10% Similarity=0.092 Sum_probs=79.1
Q ss_pred CCCEEEEecC----C-----CeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCC-----CcEEEEecc
Q 011160 72 DGDILISGSD----D-----RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQIL 136 (492)
Q Consensus 72 ~~~~l~s~~~----d-----~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~ 136 (492)
++.+++.|+. + ..+.+||..+.+-...-. ....... +++.. ++..++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI---DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE---TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE---CCEEEEEcCCCCCcccccEEEECCC
Confidence 5677777775 2 458889987765322110 1111111 22222 66777777643 357888887
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEE
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
+........+......-..+.+ ++ .+++.|+.+ ..+.+||+.+.+....-.... . ......+.+
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~------r~~~~~~~~ 214 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT--I------RSGAGVCVL 214 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS--C------CBSCEEEEE
T ss_pred CCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC--c------cccceEEEE
Confidence 7654433222211111222223 44 577777654 458899988776543321110 0 111122333
Q ss_pred cCCCCceEEEecCC-----CeEEEEeccccccc
Q 011160 212 DPRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (492)
Q Consensus 212 ~p~~~~~l~~~~~d-----g~v~i~d~~~~~~~ 239 (492)
++.+++.|+.+ ..+.+||+.+.+..
T Consensus 215 ---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 215 ---HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 25677777754 46899999876543
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.21 E-value=0.081 Score=46.35 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=54.2
Q ss_pred eEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC----C-------CcEEEEeCCCCCccce
Q 011160 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE----D-------GLVQHFDLRTGAATEL 188 (492)
Q Consensus 120 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~ 188 (492)
+++.|+ ..+.+||..+++... ..+..........+...++ .+++.|+. + ..+..||+.+.+....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 445555 578899998876543 2232221222222333455 57777773 1 1277889888765332
Q ss_pred eecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC--------CeEEEEecccccc
Q 011160 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIRKYKW 238 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~v~i~d~~~~~~ 238 (492)
-..+ . .......+.+ ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 83 ~~~p----~----~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W 129 (315)
T 4asc_A 83 PPLP----S----PRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW 129 (315)
T ss_dssp CCBS----S----CEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEE
T ss_pred CCCC----c----chhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcE
Confidence 1111 0 0111122223 25677777732 4588899887653
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.14 E-value=0.11 Score=45.22 Aligned_cols=147 Identities=10% Similarity=0.050 Sum_probs=77.0
Q ss_pred CEEEEecC--CCeEEEEECCCCceeeeec-cCcCcceEEEEecCCCCCceEEeecCC----CcEEEEecccCCeeeeEEe
Q 011160 74 DILISGSD--DRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLL 146 (492)
Q Consensus 74 ~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~ 146 (492)
.+++.|+. ...+.+||..+++-...-. .........+.+ ++..++.|+.+ ..+.+||+.+........+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 35556654 3568899988765322110 111111122222 67777777754 5688889887765443222
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEcCC------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEE
Q 011160 147 GKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (492)
Q Consensus 147 ~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (492)
.........+.+ ++ .+++.|+.+ ..+.+||+.+.+....-.... ... ....+.+ ++.+++
T Consensus 89 p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~------~~~~~~~---~~~iyv 154 (306)
T 3ii7_A 89 PTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRC------SHGMVEA---NGLIYV 154 (306)
T ss_dssp SSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CCB------SCEEEEE---TTEEEE
T ss_pred CccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--Ccc------eeEEEEE---CCEEEE
Confidence 211111222222 44 577777765 458899998876543311111 111 1122222 256777
Q ss_pred EecC---------CCeEEEEecccccc
Q 011160 221 VAGS---------DEYTRLYDIRKYKW 238 (492)
Q Consensus 221 ~~~~---------dg~v~i~d~~~~~~ 238 (492)
.|+. -..+.+||+.+.+.
T Consensus 155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 155 CGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp ECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred ECCCCCCCCcccccceEEEeCCCCCeE
Confidence 7763 34588999887654
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.14 E-value=0.053 Score=47.31 Aligned_cols=149 Identities=14% Similarity=0.094 Sum_probs=78.7
Q ss_pred CCCEEEEecCC------CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC---------CCcEEEEecc
Q 011160 72 DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQIL 136 (492)
Q Consensus 72 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------dg~v~iw~~~ 136 (492)
++++++.|+.+ ..+.+||..+..-...-.......-.+++.. ++..++.|+. -..+.+||+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 56777887765 4688999887653221100111111122222 6677777763 3458889988
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEE
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
+........+...... .+++.. ++ ++++.|+.+ ..+.+||+.+.+....-.... ......++.+
T Consensus 178 ~~~W~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--------~r~~~~~~~~ 246 (306)
T 3ii7_A 178 TETWTELCPMIEARKN-HGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW--------KGVTVKCAAV 246 (306)
T ss_dssp TTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC--------CBSCCEEEEE
T ss_pred CCeEEECCCccchhhc-ceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC--------CccceeEEEE
Confidence 7755433222211111 122222 44 577777654 358899998876543321110 1111223333
Q ss_pred cCCCCceEEEecCC-----CeEEEEeccccc
Q 011160 212 DPRNANLFAVAGSD-----EYTRLYDIRKYK 237 (492)
Q Consensus 212 ~p~~~~~l~~~~~d-----g~v~i~d~~~~~ 237 (492)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 247 ---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 ---GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ---TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ---CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 25688888744 457888887654
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.14 E-value=0.069 Score=46.41 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC-----CcEEEEecccCCee
Q 011160 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGV 141 (492)
Q Consensus 72 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~ 141 (492)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++..++.|+.+ ..+.+||+.+....
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 56777777654 3688899877653221101111111122222 67777777754 45888998776554
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
....+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+....-.... . ......+.+ + +
T Consensus 189 ~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~------r~~~~~~~~--~-~ 254 (301)
T 2vpj_A 189 NVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT--P------RCYVGATVL--R-G 254 (301)
T ss_dssp EECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS--C------CBSCEEEEE--T-T
T ss_pred eCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC--c------ccceeEEEE--C-C
Confidence 33222211111122222 34 577777764 468999998876543321111 0 011122333 2 5
Q ss_pred ceEEEecCC-----CeEEEEeccccc
Q 011160 217 NLFAVAGSD-----EYTRLYDIRKYK 237 (492)
Q Consensus 217 ~~l~~~~~d-----g~v~i~d~~~~~ 237 (492)
.+++.|+.+ ..+.+||+.+.+
T Consensus 255 ~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 255 RLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEEcCcCCCcccccEEEEcCCCCe
Confidence 677777755 357788887654
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.11 E-value=0.1 Score=54.31 Aligned_cols=270 Identities=11% Similarity=0.125 Sum_probs=147.5
Q ss_pred CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcC
Q 011160 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (492)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 160 (492)
...+|.|-|+..+..+.+... .--+...+| ..+.|+.-. ..++.|+++.+...+....+ ..+|.--.|-.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi----~AdsAIMnP--~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWis 115 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPI----SADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS 115 (1630)
T ss_pred CCceEEEEECCCCCCcccccc----cchhhccCC--CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEecC
Confidence 344788889887665432211 122345677 666666554 67899999988777665333 24566667765
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCC-CccceeecCCCCCCCcceeecceEEEEEcCCCCceEE-Eec------CCCeEEEEe
Q 011160 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAG------SDEYTRLYD 232 (492)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~------~dg~v~i~d 232 (492)
.. .|+..+ +..|+.|++... .+...+..+... ....|..-..+++ .++++ +|- -.|.+.+|.
T Consensus 116 ~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L------~~~QIinY~~d~~-~kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 116 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred CC--eeEEEc-CCeEEEeccCCCCccHHHHhcchhc------ccCeeEEeeeCCC-CCeEEEEeeccCCCcccceeeeee
Confidence 54 344443 357999999742 344444332221 2346777777887 44544 332 357788888
Q ss_pred cccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC---CCCeeEeecC----CcEEEEecCCC-CCCCCCCCCCCC
Q 011160 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYND----EFIYLFTQDMG-LGPNPPPSSPVS 304 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~----~~i~~~d~~~~-~~~~~~~~~~~~ 304 (492)
...+. .....+|-.....+.... ...+++.+.. +++++.++... .....+.
T Consensus 186 ~er~~----------------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~----- 244 (1630)
T 1xi4_A 186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----- 244 (1630)
T ss_pred ccccc----------------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc-----
Confidence 87653 222333333333332221 1123332222 47888888653 1111111
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccCCceeec--cccceeeeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe
Q 011160 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (492)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~ 382 (492)
.+....+.. ..+. .-.++.. ++.-..+..-+.-|.|+++|+.+|.++..-+
T Consensus 245 -------------------------kk~~~~~~~~~~~~D-fpv~~~v-s~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 245 -------------------------KKAVDVFFPPEAQND-FPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred -------------------------cccccccCCcccccC-cceEEEe-ccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 001111110 1111 1234554 7777788888899999999999999886544
Q ss_pred cCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCC
Q 011160 383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (492)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (492)
-...+|...+.++...=++.....|.|.--.+....
T Consensus 298 is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 298 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 444445544444433334444466666655555443
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.07 E-value=0.048 Score=47.48 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=78.9
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC-------CcEEEEecccCC
Q 011160 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------GQVRHAQILERG 139 (492)
Q Consensus 72 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g~v~iw~~~~~~ 139 (492)
++.+++.|+.++ .+.+||..+.+-...-.......-.+++.. ++..++.|+.+ ..+.+||+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 567777777553 577888877653221101111111222222 66777777643 358889987765
Q ss_pred eeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 140 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
......+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+....-.... ... ....+.+
T Consensus 185 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r~------~~~~~~~--- 250 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM--CRR------NAGVCAV--- 250 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--CCB------SCEEEEE---
T ss_pred EEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--ccc------cCeEEEE---
Confidence 5433222211111122222 34 577777764 368899998876543321111 000 1122222
Q ss_pred CCceEEEecCCC-----eEEEEecccccc
Q 011160 215 NANLFAVAGSDE-----YTRLYDIRKYKW 238 (492)
Q Consensus 215 ~~~~l~~~~~dg-----~v~i~d~~~~~~ 238 (492)
++.+++.|+.++ .+.+||+.+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 256777777553 488898877653
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.07 E-value=0.11 Score=46.54 Aligned_cols=157 Identities=9% Similarity=0.064 Sum_probs=95.4
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeeccCc---CcceEEEEecCCCCCceEEeecCCCcEEEEecccCCe------
Q 011160 70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSGH---NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG------ 140 (492)
Q Consensus 70 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~------ 140 (492)
+.+|.-|+.+- ++.||.-++.....-+.+...+ -..|..+..+| +|++||..+. ..|.|-.+..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp--sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST--SGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT--TSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC--CCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 34566565554 3678877877444323331221 23678899999 9999998864 5788888873321
Q ss_pred ----eeeEEeec------CCCceEEEEEcCCCCc--EEEEEcCCCcEEEEeCCCCCccceeecCCCCC-CCcceeecceE
Q 011160 141 ----VETKLLGK------HQGRAHKLAIEPGSPH--VFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYMTVVNLN 207 (492)
Q Consensus 141 ----~~~~~~~~------~~~~v~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~v~ 207 (492)
...+.+.- ...+|..+.|||-+.+ .|++-..|+.|++||+........ ....... .........+.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 11111211 2467999999996533 789999999999999987332221 1111100 00000225788
Q ss_pred EEEEcCCCCceEEEe--cCCCeEEEEe
Q 011160 208 AIAIDPRNANLFAVA--GSDEYTRLYD 232 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~--~~dg~v~i~d 232 (492)
+++|.++ +-.|+.. +..|.|+-.-
T Consensus 184 S~~Fg~~-~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 184 DLEFSKD-GLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEECTT-SSCEEEEECTTSCEEEEES
T ss_pred EEEEcCC-CcEEEEEecCCCCCEEEEC
Confidence 9999995 6666664 4778877543
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.06 E-value=0.14 Score=45.10 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=63.0
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee--eee---ccCcCcceEEEEecCCCC---CceEEee---cCCCc
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSF---HSGHNDNVFQAKIMPFTD---DRSIVTC---AADGQ 129 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~---~~~~~~~v~~~~~~~~~~---~~~l~~~---~~dg~ 129 (492)
-..-+.|+|.|+|+++++--..|.|++++..++... ..+ ..........|+++| + +..|+.. ..++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEecCCCCE
Confidence 345679999999998887765899999986655432 111 122345688999998 5 2334332 23455
Q ss_pred EEEEecccCC---------eeeeEEee-cCCCceEEEEEcCCCCcEEEEEc
Q 011160 130 VRHAQILERG---------GVETKLLG-KHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 130 v~iw~~~~~~---------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
|.-|.+.... ......+. ........|+|.|+| .++++.+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~G 158 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTG 158 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEEC
Confidence 6666554411 11111111 122345679999999 5666644
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.06 E-value=0.044 Score=44.22 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=77.5
Q ss_pred CCceEEeecCCCcEEEEecccCCe-ee--eEEeecC--CCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeec
Q 011160 117 DDRSIVTCAADGQVRHAQILERGG-VE--TKLLGKH--QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (492)
Q Consensus 117 ~~~~l~~~~~dg~v~iw~~~~~~~-~~--~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (492)
...+|+....| +++.=.+..... .. .....+. -..+..++|+|++ .+ ++. .+|.++-.+..+.....-+..
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~L-YaV-~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-EL-YGV-LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-CE-EEE-ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-cE-EEE-eCCeEEEECCCCCCccccccc
Confidence 34556666666 555444433321 00 1011122 2477899999988 34 444 778777766654332211111
Q ss_pred CCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcC
Q 011160 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (492)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 271 (492)
.......+ -....++.|.|+ +.+.++ .||.|+-++..+.....-+. .-..+-...-..+..|.+.|
T Consensus 79 ~t~IG~~G---w~~F~a~~fD~~-G~LYav--~dG~iyr~~pP~~~~~~Wl~--------~a~~vg~~gw~~~~~lff~p 144 (236)
T 1tl2_A 79 AKKIGNGG---WNQFQFLFFDPN-GYLYAV--SKDKLYKASPPQSDTDNWIA--------RATEVGSGGWSGFKFLFFHP 144 (236)
T ss_dssp CEEEECSC---GGGCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHH--------HSEEEECSSGGGEEEEEECT
T ss_pred ccEecccc---cccceEEEECCC-CCEEEe--CCCEEEEeCCCcCCCCceec--------cccEeccCCCCceEEEEECC
Confidence 00000000 012478999998 555555 56988877654321100000 00000111124679999999
Q ss_pred CCCeeEeecCCcEEE
Q 011160 272 QSELLVSYNDEFIYL 286 (492)
Q Consensus 272 ~~~~l~~~~~~~i~~ 286 (492)
+|.+.++. ++.++-
T Consensus 145 ~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 145 NGYLYAVH-GQQFYK 158 (236)
T ss_dssp TSCEEEEE-TTEEEE
T ss_pred CceEEEEe-CCcEEe
Confidence 99988888 777554
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.03 E-value=0.046 Score=44.08 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcE
Q 011160 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI 284 (492)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i 284 (492)
.+..++|+|+ +.+.++ .+|.++-.+..+.....-.. ....+-...-.....+.|.|+|.+.++ +++.|
T Consensus 42 ~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~--------s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMG--------RAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKL 109 (236)
T ss_dssp TCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHH--------HCEEEECSCGGGCSEEEECTTSCEEEE-ETTEE
T ss_pred cceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccc--------cccEecccccccceEEEECCCCCEEEe-CCCEE
Confidence 5679999996 665555 67777666654421100000 000000000112478999999988888 77888
Q ss_pred EEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeecc
Q 011160 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (492)
Q Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~d 364 (492)
+-++-.+..... -....+.-+......+..|.+ .|+|.+.+.. |
T Consensus 110 yr~~pP~~~~~~---------------------------------Wl~~a~~vg~~gw~~~~~lff-~p~G~Lyav~--d 153 (236)
T 1tl2_A 110 YKASPPQSDTDN---------------------------------WIARATEVGSGGWSGFKFLFF-HPNGYLYAVH--G 153 (236)
T ss_dssp EEESCCCSTTCC---------------------------------HHHHSEEEECSSGGGEEEEEE-CTTSCEEEEE--T
T ss_pred EEeCCCcCCCCc---------------------------------eeccccEeccCCCCceEEEEE-CCCceEEEEe--C
Confidence 877643311000 000011112212223677777 9999888877 7
Q ss_pred CeEEEEecCCCe------eeEEEe-cCCceeEEEeecCCCCeEEEeeCCCCEEEecc
Q 011160 365 GRIFIWKKKGGE------LIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (492)
Q Consensus 365 g~i~iwd~~~~~------~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (492)
+.++-+...++. ....+. ..-..-..+.|.+++.+.+.. ++ ++|..
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 776544433221 112222 222345567799999877766 66 45544
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.96 E-value=0.047 Score=48.92 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=77.9
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCce------------eeeeccC-----cCcceEEEEecCCC-CCceEEee
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERV------------KLSFHSG-----HNDNVFQAKIMPFT-DDRSIVTC 124 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~~~ 124 (492)
.|..+..+|+|++||..+. ..|.|-.+..+.. ...+.-+ ...+|..+.|+|.. .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 5677999999999999876 5788888763220 1122111 24679999999953 35689999
Q ss_pred cCCCcEEEEecccCCeeeeEEee---------cCCCceEEEEEcCCCCcEEEEEc--CCCcEEEEe
Q 011160 125 AADGQVRHAQILERGGVETKLLG---------KHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFD 179 (492)
Q Consensus 125 ~~dg~v~iw~~~~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~l~~~~--~dg~i~iwd 179 (492)
..|+.|++||+......+. .+. .....|.+++|.+++ ..|+..+ ..|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCCCCEEEEC
Confidence 9999999999986332222 121 223578899999865 5666644 778777554
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.86 E-value=0.21 Score=43.70 Aligned_cols=146 Identities=11% Similarity=0.110 Sum_probs=74.1
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC-----C------CcEEEEecccCCeeee
Q 011160 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----D------GQVRHAQILERGGVET 143 (492)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d------g~v~iw~~~~~~~~~~ 143 (492)
+++.|+ ..+.+||..+++-...-...........+... ++..++.|+. . ..+.+||..+......
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 445565 57899999887743321111112222223333 6777777773 1 1267788877654332
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCC--------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCC
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (492)
..+...... .+++.. ++ .+++.|+.+ ..+.+||+.+.+....-..+. ... ....+.+ +
T Consensus 83 ~~~p~~r~~-~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~------~~~~~~~---~ 148 (315)
T 4asc_A 83 PPLPSPRCL-FGLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVY------GHTVLSH---M 148 (315)
T ss_dssp CCBSSCEES-CEEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCB------SCEEEEE---T
T ss_pred CCCCcchhc-eeEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--ccc------ceeEEEE---C
Confidence 111111111 122222 34 577777742 458899998876443221111 011 1122222 2
Q ss_pred CceEEEecC-C-----CeEEEEecccccc
Q 011160 216 ANLFAVAGS-D-----EYTRLYDIRKYKW 238 (492)
Q Consensus 216 ~~~l~~~~~-d-----g~v~i~d~~~~~~ 238 (492)
+.+++.|+. + ..+.+||+.+.+.
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 567777775 2 4688999887654
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.73 E-value=0.28 Score=43.29 Aligned_cols=245 Identities=11% Similarity=0.070 Sum_probs=119.4
Q ss_pred CCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCC---CCEEEEe-
Q 011160 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---GDILISG- 79 (492)
Q Consensus 4 ~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~- 79 (492)
+.+.|+|.++++--..|.|++++...|+... +..+ -..+....+....|+|+|+ +.+|...
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~-------------v~~~--~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTE-------------LGEV--PGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEE-------------EEEC--TTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEee-------------eccc--CceeecCCCCceeeEeccccccCCEEEEEE
Confidence 3466888888877668889888765444320 0000 0111223567789999995 3344332
Q ss_pred --cCCCeEEEEECCCC----------ceee-eeccCcCcceEEEEecCCCCCceEEeecC-------------CCcEEEE
Q 011160 80 --SDDRRVILWDWKTE----------RVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAA-------------DGQVRHA 133 (492)
Q Consensus 80 --~~d~~i~iwd~~~~----------~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-------------dg~v~iw 133 (492)
..++.|.-|.+..+ +.+. .+.......-..|+|.| +|.++++.+. .|.|.-.
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp--DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP--DKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT--TSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC--CCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 23456666666542 1111 12111122346799999 9987776542 2444434
Q ss_pred ecccCC----e--eeeEEeecCCCceEEEEEcCCCCcEEEEE-cCCCcEEEEeCCCCCccceeecCC-----CC--CCCc
Q 011160 134 QILERG----G--VETKLLGKHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRP-----ID--DRRN 199 (492)
Q Consensus 134 ~~~~~~----~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-----~~--~~~~ 199 (492)
+....- . .......+|. ....++|+|++ .++++- +.++.=.|--+..+...---.+.. .. ....
T Consensus 180 ~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred eCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 432210 0 0011122443 45689999987 343332 333322333233332110000000 00 0000
Q ss_pred ceee-cceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEe
Q 011160 200 YMTV-VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (492)
Q Consensus 200 ~~~~-~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 278 (492)
+.+. .....++|.. +.++...-..+.|....+........ ...+.......+..++..|+|.++++
T Consensus 258 ~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~~~~-----------~e~~l~~~~gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 258 WSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPLKGTAAAAD-----------PQAFLEGEYGRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp ECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEEETTEESSC-----------CEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred cCCCCCCCcceEEEc--CceeeccccCCEEEEEEecCCceecc-----------eEEeecCCCCCccEEEECCCCcEEEE
Confidence 0011 2456677763 56666666666776666654432110 11122223467899999999977666
Q ss_pred ec
Q 011160 279 YN 280 (492)
Q Consensus 279 ~~ 280 (492)
..
T Consensus 325 td 326 (347)
T 3das_A 325 TS 326 (347)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.66 E-value=0.14 Score=44.65 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=77.7
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC-----CcEEEEecccCCee
Q 011160 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGV 141 (492)
Q Consensus 72 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~ 141 (492)
++++++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+....
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence 56777777643 3588899877653221100111111122222 56777777654 45888998776544
Q ss_pred eeEEeecCCCceEEEEEcCCCCcEEEEEcCC-----CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 142 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
....+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+....-.... .......+.+ ++
T Consensus 198 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--------~r~~~~~~~~---~~ 263 (308)
T 1zgk_A 198 MITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH--------RRSALGITVH---QG 263 (308)
T ss_dssp ECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS--------CCBSCEEEEE---TT
T ss_pred eCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC--------CccceEEEEE---CC
Confidence 33222211111222233 44 577777764 568999998876543321110 0011122222 25
Q ss_pred ceEEEecCC-----CeEEEEeccccc
Q 011160 217 NLFAVAGSD-----EYTRLYDIRKYK 237 (492)
Q Consensus 217 ~~l~~~~~d-----g~v~i~d~~~~~ 237 (492)
.+++.|+.+ ..+.+||+.+.+
T Consensus 264 ~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 264 RIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEEEcCcCCCcccceEEEEcCCCCE
Confidence 677777744 357788877654
No 331
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.63 E-value=0.35 Score=43.11 Aligned_cols=104 Identities=12% Similarity=0.160 Sum_probs=59.6
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeee--ccCcCcceEEEEecCCCC---CceEEeecC----C----
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSF--HSGHNDNVFQAKIMPFTD---DRSIVTCAA----D---- 127 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~v~~~~~~~~~~---~~~l~~~~~----d---- 127 (492)
..-..|+|.|+|+++++ ..+|.|++++ .++. .+..+ ..........|+++| + +..|+++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEeccCCCCCcc
Confidence 34579999999986665 4559999987 3454 22211 012234688999999 6 445554432 2
Q ss_pred CcEEEEecccCC--e----eeeEEee-cCCCceEEEEEcCCCCcEEEEEc
Q 011160 128 GQVRHAQILERG--G----VETKLLG-KHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 128 g~v~iw~~~~~~--~----~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
..|..|+..... . +....+. ........|+|.|+| +++++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence 567777765431 1 1111111 112235679999999 4555543
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.57 E-value=0.34 Score=42.37 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=72.0
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecC----CC-------cEEEEecccCCeeee
Q 011160 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DG-------QVRHAQILERGGVET 143 (492)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg-------~v~iw~~~~~~~~~~ 143 (492)
+++.|+. .+..||..+++-...-............... ++..++.|+. ++ .+.+||..+......
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4455553 4788998877653321111111222222333 6777777773 12 167788776654332
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEcCC-------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCC
Q 011160 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (492)
Q Consensus 144 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (492)
..+....... +++.. ++ .+++.|+.+ ..+.+||+.+.+....-..+. .. .....+.. ++
T Consensus 94 ~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r------~~~~~~~~---~~ 159 (318)
T 2woz_A 94 PPLPSARCLF-GLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KV------YGHNVISH---NG 159 (318)
T ss_dssp SCBSSCBCSC-EEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CE------ESCEEEEE---TT
T ss_pred CCCCcccccc-ceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cc------cccEEEEE---CC
Confidence 1122111111 22222 34 577777754 347888988776543321110 00 01122222 25
Q ss_pred ceEEEecC------CCeEEEEecccccc
Q 011160 217 NLFAVAGS------DEYTRLYDIRKYKW 238 (492)
Q Consensus 217 ~~l~~~~~------dg~v~i~d~~~~~~ 238 (492)
.+++.|+. -..+.+||+.+.+.
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 67777764 23588999887654
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.55 E-value=0.22 Score=52.08 Aligned_cols=208 Identities=12% Similarity=0.118 Sum_probs=118.4
Q ss_pred CCCCCCCCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecC
Q 011160 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (492)
Q Consensus 2 ~~~~~~~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (492)
|+|--+|..+.+|.-. ..++.|+|+++.+.+.. +. -..+|.-=.|-.+. .|+-.+.
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks---------------------~~-~~e~VvfWkWis~~-~l~lVT~ 124 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA---------------------HT-MTDDVTFWKWISLN-TVALVTD 124 (1630)
T ss_pred hhhccCCCcceEEEec-CCeEEEeehHHhhhhcc---------------------cc-cCCCceEEEecCCC-eeEEEcC
Confidence 5666778888777765 67888999887655421 11 12456555665433 3444443
Q ss_pred CCeEEEEECCCCceeeeeccCc----CcceEEEEecCCCCCceEEeec-------CCCcEEEEecccCCeeeeEEeecCC
Q 011160 82 DRRVILWDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCA-------ADGQVRHAQILERGGVETKLLGKHQ 150 (492)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~-------~dg~v~iw~~~~~~~~~~~~~~~~~ 150 (492)
..|.-|++........++..| ...|..-+.++ +.++++..| -.|.+.+|.+..+.. +.+.+|.
T Consensus 125 -~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~--~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s---Q~iegha 198 (1630)
T 1xi4_A 125 -NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA--KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---QPIEGHA 198 (1630)
T ss_pred -CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC--CCCeEEEEeeccCCCcccceeeeeecccccc---hhhhHhH
Confidence 579999997543333332333 34677777777 888877543 347888998765433 2366776
Q ss_pred CceEEEEEc--CCCCcEEEEEcC---CCcEEEEeCCCC-CccceeecCCCC-CCCcceeecceEEEEEcCCCCceEEEec
Q 011160 151 GRAHKLAIE--PGSPHVFYTCGE---DGLVQHFDLRTG-AATELFTCRPID-DRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 151 ~~v~~i~~~--~~~~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
.....+... +....+|+.+.. .+.++|.++... .....+...... ..+......-..++..++. -..+...+
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k-~g~iy~it 277 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLIT 277 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc-cCEEEEEe
Confidence 555444432 112123332222 268888888553 111111100000 0000001223456777887 45777888
Q ss_pred CCCeEEEEecccccccC
Q 011160 224 SDEYTRLYDIRKYKWDG 240 (492)
Q Consensus 224 ~dg~v~i~d~~~~~~~~ 240 (492)
.-|.+.+||+.++..+.
T Consensus 278 k~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cCceEEEEecccchhhh
Confidence 99999999999987543
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.52 E-value=0.37 Score=42.16 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=51.8
Q ss_pred eEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC----CC-------cEEEEeCCCCCccce
Q 011160 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE----DG-------LVQHFDLRTGAATEL 188 (492)
Q Consensus 120 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~ 188 (492)
.++.|+. .+..||..+.+.... ............+...++ .+++.|+. ++ .+..||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecc-cCCccCCccceEEEEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 378889887765442 222111112222233445 57777773 12 177888887765432
Q ss_pred eecCCCCCCCcceeecceEEEEEcCCCCceEEEecCC-------CeEEEEecccccc
Q 011160 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-------EYTRLYDIRKYKW 238 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------g~v~i~d~~~~~~ 238 (492)
-.... ... ....+.+ ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 94 ~~~p~--~r~------~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 139 (318)
T 2woz_A 94 PPLPS--ARC------LFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139 (318)
T ss_dssp SCBSS--CBC------SCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE
T ss_pred CCCCc--ccc------ccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCE
Confidence 11111 011 1122223 25677777653 3478888877654
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.15 E-value=0.81 Score=42.29 Aligned_cols=105 Identities=14% Similarity=0.236 Sum_probs=61.1
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCcee--eeecc-----CcCcceEEEEecCCCC---CceEEeecC------
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHS-----GHNDNVFQAKIMPFTD---DRSIVTCAA------ 126 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~~---~~~l~~~~~------ 126 (492)
.-..|+|.|+|+++++-...+.|++++..++... ..+.. .....+..|+|+| + +..|+.+..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEEEEeccccCC
Confidence 4569999999998887655457888876555432 22211 1245678999998 6 556655432
Q ss_pred -------CCcEEEEecccCC-e-----eeeEEee-cCCCceEEEEEcCCCCcEEEEEc
Q 011160 127 -------DGQVRHAQILERG-G-----VETKLLG-KHQGRAHKLAIEPGSPHVFYTCG 170 (492)
Q Consensus 127 -------dg~v~iw~~~~~~-~-----~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~ 170 (492)
...|.-++..... . +....+. ........|+|.|+| +++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 1345555543321 1 1111111 122457899999999 4555544
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.03 E-value=0.71 Score=45.48 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=62.6
Q ss_pred CCCEEEEecCC------CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCC--cEEEEecccCCeeee
Q 011160 72 DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERGGVET 143 (492)
Q Consensus 72 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~ 143 (492)
++.+++.||.+ ..+.+||..+..-...-.......-.+++... ++..++.|+.++ .+.+||..+......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 67788888754 35788898875432211001111112333323 677888887654 689999887665433
Q ss_pred EE---eecCCCceEEEEEcCCCCcEEEEEcCC-------CcEEEEeCCCCC
Q 011160 144 KL---LGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGA 184 (492)
Q Consensus 144 ~~---~~~~~~~v~~i~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~ 184 (492)
.. .........++.+..+...+++.|+.+ ..+.+||+.+..
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 21 111112223355555523677777762 458899998887
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.12 Score=45.30 Aligned_cols=200 Identities=11% Similarity=-0.039 Sum_probs=100.6
Q ss_pred CceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCc-cceEEEEE---EcCCCCEEEEe-cCCCe
Q 011160 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVNTVS---FNTDGDILISG-SDDRR 84 (492)
Q Consensus 10 ~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~---~s~~~~~l~s~-~~d~~ 84 (492)
+.++++++.||.|.-.|.++|++.-+ ++.. ..++.... ...++..++.. +.||.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~---------------------~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~ 68 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWS---------------------IEPENFQPLIEIQEPSRLETYETLIIEPFGDGN 68 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEE---------------------ECGGGSCCSEECCCSCTTTSSEEEEECCSTTTE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEE---------------------ecCCccCCcEEecCCccccCCcEEEEEECCCCE
Confidence 45788999999999999999988732 1111 01111100 00133334343 57999
Q ss_pred EEEEECCCCceeeeeccC---cCcceEEEEecCCC-------CCceEEeecCCCcEEEEecccCCeeeeEEeecCCCc--
Q 011160 85 VILWDWKTERVKLSFHSG---HNDNVFQAKIMPFT-------DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR-- 152 (492)
Q Consensus 85 i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~-------~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-- 152 (492)
|..++..+|.....+... ...++.. .-.|.- .+..+++|+.+|.+.-.|+.+++.+...........
T Consensus 69 l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 147 (339)
T 2be1_A 69 IYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFG 147 (339)
T ss_dssp EEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---
T ss_pred EEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccc
Confidence 999998887654443111 1112221 111111 466788999999999999999988765332211111
Q ss_pred ---eEEEEEc---C-CCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecce-EEEEEcCCCCceEEEecC
Q 011160 153 ---AHKLAIE---P-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 153 ---v~~i~~~---~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~ 224 (492)
..|.... . .....++.+..+..+.+.+ ++++ ...+......... ....+ ..-..+.+ +.+ +.++.
T Consensus 148 ~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~~~~~s~D-g~~-~~~~~ 220 (339)
T 2be1_A 148 SQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLALQNTFSKD-GMC-IAPFR 220 (339)
T ss_dssp -----------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHTTCSSCSS-SCC-EEEET
T ss_pred ccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccc---cccccccccccccC-CcE-EEECC
Confidence 0111110 0 1113567777777777766 4443 2222110000000 00000 00001122 334 45788
Q ss_pred CCeEEEEecccccc
Q 011160 225 DEYTRLYDIRKYKW 238 (492)
Q Consensus 225 dg~v~i~d~~~~~~ 238 (492)
||.|.-+|..+++.
T Consensus 221 dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 221 DKSLLASDLDFRIA 234 (339)
T ss_dssp TTEEEEECSTTCCE
T ss_pred CCEEEEEECCCCcE
Confidence 99999999887764
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.00 E-value=0.96 Score=41.80 Aligned_cols=110 Identities=13% Similarity=0.230 Sum_probs=58.9
Q ss_pred cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec------CCCceEEEEEcCC---CCcEEEEEcC----
Q 011160 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------HQGRAHKLAIEPG---SPHVFYTCGE---- 171 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------~~~~v~~i~~~~~---~~~~l~~~~~---- 171 (492)
.....|+|.| +++++++-...+.|++++...+.......+.. .......|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3567999999 99877765444568888764443322211221 2355679999995 4344444332
Q ss_pred --------CCcEEEEeCCCCC--c---cceeecCCCCCCCcceeecceEEEEEcCCCCceEEEec
Q 011160 172 --------DGLVQHFDLRTGA--A---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (492)
Q Consensus 172 --------dg~i~iwd~~~~~--~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (492)
...|..|++.... . ...+...+. ... | ....|+|.|+ +.++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~--~~~--H--~~~~l~f~pD-G~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS--SKD--H--QSGRLVIGPD-QKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC--CSS--C--CEEEEEECTT-SCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC--CCC--C--CCCeEeECCC-CeEEEEEC
Confidence 2356666654321 1 111111111 011 2 3588999998 45555533
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.98 E-value=0.29 Score=43.65 Aligned_cols=140 Identities=11% Similarity=0.048 Sum_probs=63.0
Q ss_pred CeEEEEECCCCceeeeeccCcCcce-EEEEecCCCCCceEEeecC------CCcEEEEec--ccCCeeeeEEeecCCCce
Q 011160 83 RRVILWDWKTERVKLSFHSGHNDNV-FQAKIMPFTDDRSIVTCAA------DGQVRHAQI--LERGGVETKLLGKHQGRA 153 (492)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~------dg~v~iw~~--~~~~~~~~~~~~~~~~~v 153 (492)
..+.+||..+.+-...-.......- .+++.. ++.+++.|+. ...+.+|++ .+........+.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE---CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 5788999887653222101111111 233332 5677777764 245677776 443333221121111111
Q ss_pred E-EEEEcCCCCcEEEEEcCC----------------------CcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 154 H-KLAIEPGSPHVFYTCGED----------------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 154 ~-~i~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
. +++. .++ .+++.|+.+ ..+.+||+.+.+....-.... ... ...++.
T Consensus 245 ~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~------~~~~~~ 314 (357)
T 2uvk_A 245 GGFAGI-SND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ--GRA------YGVSLP 314 (357)
T ss_dssp SCEEEE-ETT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS--CCB------SSEEEE
T ss_pred cceEEE-ECC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC--Ccc------cceeEE
Confidence 1 1222 234 577777632 257789998776554322111 000 112233
Q ss_pred EcCCCCceEEEecCCC------eEEEEecccccc
Q 011160 211 IDPRNANLFAVAGSDE------YTRLYDIRKYKW 238 (492)
Q Consensus 211 ~~p~~~~~l~~~~~dg------~v~i~d~~~~~~ 238 (492)
+ ++.+++.|+.++ .|.++++++++.
T Consensus 315 ~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 315 W---NNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp E---TTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred e---CCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 3 256778887543 355567776653
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.95 E-value=1.1 Score=41.89 Aligned_cols=113 Identities=5% Similarity=-0.034 Sum_probs=66.5
Q ss_pred ceEEEEEcCCCCeeEeec--CCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccc
Q 011160 263 GITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (492)
Q Consensus 263 ~i~~~~~s~~~~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (492)
....+.++|+|+++++++ +.++.++++........-. + .. .........+--.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k-------------------~--~~----~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK-------------------L--AD----PRDVIVGEPELGL 378 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC-------------------C--SC----GGGGEEECCBCCS
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc-------------------c--cC----cccceEeeccCCC
Confidence 445688999999999888 5589999987421000000 0 00 0000001111111
Q ss_pred cceeeeeEEeecCCCcEEEEeeccCeEEEEecCCC----------eeeEEEecCCceeEEE------eecCCCCeEEEee
Q 011160 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----------ELIRVIEADRHVVNCI------EPHPHSTVLASSG 404 (492)
Q Consensus 341 ~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~~------~~s~~~~~l~s~~ 404 (492)
. -...+| +++|.-..+---|..|.-|++... ..+..+..|-.+ -.+ .-.|+|++|++..
T Consensus 379 G---PlHt~F-d~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 379 G---PLHTTF-DGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp C---EEEEEE-CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred c---ccEEEE-CCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 1 356677 999966666678999999998653 455667666543 222 2357889998875
Q ss_pred C
Q 011160 405 I 405 (492)
Q Consensus 405 ~ 405 (492)
.
T Consensus 454 K 454 (638)
T 3sbq_A 454 K 454 (638)
T ss_dssp S
T ss_pred c
Confidence 4
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.31 Score=42.79 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=70.4
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCC-CCCceEEee-cCCCcEEEEecccCCeeeeEEeec--C
Q 011160 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTC-AADGQVRHAQILERGGVETKLLGK--H 149 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~--~ 149 (492)
.+++.++.||.|.-.|..+|+.+.++......++....-... .++..++.. ..||.|..++..++.......... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 468888999999999999999988874331123332211110 022333333 579999999987764332211111 1
Q ss_pred CCceEE---EEE------cCCCCcEEEEEcCCCcEEEEeCCCCCccceeec
Q 011160 150 QGRAHK---LAI------EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (492)
Q Consensus 150 ~~~v~~---i~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (492)
..++.. ..+ +.+ ..+++|+.+|.+...|+++|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~--g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVED--EKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CC--EEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccC--CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 112211 001 123 3679999999999999999999888764
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.67 E-value=1.6 Score=42.94 Aligned_cols=155 Identities=12% Similarity=0.156 Sum_probs=80.1
Q ss_pred CCceEEeecCC----CcEEEEecccCCeeeeE-Eee----cCCCceEEEEEcC-CCCcEEEEEcCC------CcEEEEeC
Q 011160 117 DDRSIVTCAAD----GQVRHAQILERGGVETK-LLG----KHQGRAHKLAIEP-GSPHVFYTCGED------GLVQHFDL 180 (492)
Q Consensus 117 ~~~~l~~~~~d----g~v~iw~~~~~~~~~~~-~~~----~~~~~v~~i~~~~-~~~~~l~~~~~d------g~i~iwd~ 180 (492)
++..++.|+.+ ..+.+||..+....... .+. .....-.+++..+ ++ .+++.|+.+ ..+.+||+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeC
Confidence 66777777753 46888998877655432 110 1111112333333 55 577777754 35788998
Q ss_pred CCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC--eEEEEecccccccCCCCCCCCccccCCCCcCC
Q 011160 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (492)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
.+.+....-.... .. ....++.+. + +.+++.|+.++ .+.+||..+.+.......+ ...
T Consensus 476 ~t~~W~~~~~~p~--~R------~~h~~~~~~-~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g---------~~p- 535 (695)
T 2zwa_A 476 KTREWSMIKSLSH--TR------FRHSACSLP-D-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD---------EFF- 535 (695)
T ss_dssp TTTEEEECCCCSB--CC------BSCEEEECT-T-SCEEEECCBCSSCSEEEEETTTTEEEECCCSS---------GGG-
T ss_pred CCCcEEECCCCCC--Cc------ccceEEEEc-C-CEEEEECCCCCCCCEEEEECCCCceEEccCCC---------CCC-
Confidence 8865443311110 11 111222222 3 67888887654 6899999876543221000 000
Q ss_pred CcccceEEEEEcCC-CCeeEeecC--------CcEEEEecCCC
Q 011160 259 DEQVGITGLAFSDQ-SELLVSYND--------EFIYLFTQDMG 292 (492)
Q Consensus 259 ~~~~~i~~~~~s~~-~~~l~~~~~--------~~i~~~d~~~~ 292 (492)
........+.+..+ +++++.|+. +.+.+||+.+.
T Consensus 536 ~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 536 QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 01112233455555 566666542 24888998775
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.48 E-value=1.1 Score=38.72 Aligned_cols=172 Identities=7% Similarity=0.017 Sum_probs=85.3
Q ss_pred CCCCEEEEec--CCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCC--------------CcEEEEe
Q 011160 71 TDGDILISGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------------GQVRHAQ 134 (492)
Q Consensus 71 ~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------------g~v~iw~ 134 (492)
+++.+|.... .++.|...+.+... ...+. . .. +--+++ ++.+|+-+... ..|+..+
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~-~--~~--~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLS-N--DT--AMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEE-E--EE--EEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEcc-C--Cc--eeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 4566666543 24566666654333 34441 1 11 234466 78888766542 3466666
Q ss_pred cccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEE---cCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEE
Q 011160 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC---GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (492)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (492)
+...+... +.. .. +..|++++..+..+- .....|...++...... .+.. + .+ .++
T Consensus 95 ~dg~~~~~---l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~----------~--~~--~~~ 152 (302)
T 3s25_A 95 RNGHGSTV---LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN----------H--YL--FTC 152 (302)
T ss_dssp TTSCCCEE---EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEES----------S--CC--CCS
T ss_pred CCCCcceE---eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeC----------C--Cc--eEe
Confidence 65544322 221 11 236677775444443 23455666676644332 2221 1 11 345
Q ss_pred cCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeec-CC--cEEEEe
Q 011160 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYLFT 288 (492)
Q Consensus 212 ~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~--~i~~~d 288 (492)
+|+++.+..+......|...++...... .+.. ... ...+.|++.+|+-.. .+ .|..-+
T Consensus 153 ~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---------------~l~~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ 213 (302)
T 3s25_A 153 NTSDRYFYYNNPKNGQLYRYDTASQSEA---------------LFYD---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVN 213 (302)
T ss_dssp EEETTEEEEECTTTCCEEEEETTTTEEE---------------EEEC---SCE-EEEEEEETTEEEEEEGGGTTEEEEEC
T ss_pred eEECCEEEEEeCCCceEEEEECCCCCEE---------------EEeC---CCc-cceeeecCCEEEEEEcCCCcEEEEEE
Confidence 6664444445444677877777654311 1111 111 123568888877654 22 466666
Q ss_pred cCC
Q 011160 289 QDM 291 (492)
Q Consensus 289 ~~~ 291 (492)
++.
T Consensus 214 ldG 216 (302)
T 3s25_A 214 INN 216 (302)
T ss_dssp SSS
T ss_pred CCC
Confidence 554
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.47 E-value=1.3 Score=39.39 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=46.8
Q ss_pred CCCEEEEecCC-CeEEEEECCC--Cce--eeeeccCcCcceEEEEecCCCCCceEEeecC-C---------CcEEEEecc
Q 011160 72 DGDILISGSDD-RRVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-D---------GQVRHAQIL 136 (492)
Q Consensus 72 ~~~~l~s~~~d-~~i~iwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d---------g~v~iw~~~ 136 (492)
++.+++.|+.+ ..+.+||..+ .+- +..+ ......-.+++.. ++.+++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~-p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAF-PGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCC-TTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCC-CCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 56666777643 4688888864 221 1111 1011111222222 6777777775 2 468889988
Q ss_pred cCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCC
Q 011160 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (492)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 172 (492)
+...............-.+++. .++ ++++.|+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV-HNG-KAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE-ETT-EEEEEECCC
T ss_pred CCcEEECCCCCCcccccceEEE-ECC-EEEEEeCcC
Confidence 7665433222201111112222 344 577777754
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.20 E-value=2.8 Score=41.79 Aligned_cols=285 Identities=11% Similarity=0.071 Sum_probs=147.1
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec---c-CcCcceEEEEecCCCCCceEEeecCCCcEEEEecccC
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---S-GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 138 (492)
.|.++.. .+|. |..++.+ -|..++..+++.. .+. . .....|.++.... ++.+.+ ++..| |..++..+.
T Consensus 104 ~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~--~g~lWi-gt~~G-l~~~~~~~~ 175 (758)
T 3ott_A 104 DVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTK--DNQIYV-GTYNG-LCRYIPSNG 175 (758)
T ss_dssp CEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECT--TCCEEE-EETTE-EEEEETTTT
T ss_pred eEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcC--CCCEEE-EeCCC-HhhCccCCC
Confidence 4666654 3554 5555555 5788898766542 220 0 1234688887765 565544 44444 667776554
Q ss_pred CeeeeEEeec----CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCC
Q 011160 139 GGVETKLLGK----HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (492)
Q Consensus 139 ~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (492)
.... ..... ....|.++...+++ ..|..|+. +-+..++..+++....... ....|.++...++
T Consensus 176 ~~~~-~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l----------~~~~i~~i~~d~~ 242 (758)
T 3ott_A 176 KFEG-IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAF----------HNNSIKSLALDGN 242 (758)
T ss_dssp EEEE-ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEE----------EEEEEEEEEECTT
T ss_pred ceEE-ecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCC----------CCCeEEEEEEcCC
Confidence 3221 11111 12347888877766 34455554 4588888876643221110 2335888888876
Q ss_pred CCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCCCCC
Q 011160 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (492)
Q Consensus 215 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~ 294 (492)
+. |..|+. +-+.+++..+.+....... ......-....|.++....+|.+.+....| +.++.....
T Consensus 243 -g~-lWigT~-~Gl~~~~~~~~~~~~~~~~--------~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~-- 308 (758)
T 3ott_A 243 -GD-LLAGTD-NGLYVYHNDTTPLQHIIHD--------SRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSA-- 308 (758)
T ss_dssp -CC-EEEEET-TEEEEECCTTSCCEEECCC--------TTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC---
T ss_pred -CC-EEEEeC-CceeEEecCCCcEEEEEcC--------CCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCc--
Confidence 43 444454 4578888765432110000 000001123568999998888766655444 554432110
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeeccccceeeeeEEeecCCCcEEEEeeccCeEEEEecCC
Q 011160 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~ 374 (492)
.. ...............|.++.. +.+|.+-+. +.+| +..++..+
T Consensus 309 ~~---------------------------------~~~~~~~~~~~~~~~v~~i~~-D~~g~lWiG-t~~G-l~~~~~~~ 352 (758)
T 3ott_A 309 LQ---------------------------------FIPISQITGTGDGNQFYSLFR-DSKGFYWFG-GANG-LIRFTDPA 352 (758)
T ss_dssp CE---------------------------------EEEHHHHSCSCCCCBEEEEEE-CTTCCEEEE-ETTE-EEEESCTT
T ss_pred ee---------------------------------EEecccCCCCCCCceEEEEEE-cCCCCEEEe-eCCc-ceeecccc
Confidence 00 000000000001112777776 777776554 4455 66666554
Q ss_pred Ce--eeEEEec-------CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCC
Q 011160 375 GE--LIRVIEA-------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (492)
Q Consensus 375 ~~--~~~~~~~-------h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (492)
++ ....+.. ....|.++.-.+++++.+. + ++-|..|+..+++..
T Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 353 GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-T-DGSINRYDYATRQFI 405 (758)
T ss_dssp SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-E-TTEEEEEETTTTEEE
T ss_pred cccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-e-CCcHhhcCcCCCcEE
Confidence 32 1222221 1235888888888876553 3 456888888776543
No 346
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=95.08 E-value=1.7 Score=38.65 Aligned_cols=189 Identities=12% Similarity=0.150 Sum_probs=97.9
Q ss_pred cEEEEeCCCC--CccceeecCCCCCCCcceeecceEEEEEc---CC----CCceEEEecCCCeEEEEecccccccCCCCC
Q 011160 174 LVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAID---PR----NANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (492)
Q Consensus 174 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~----~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 244 (492)
.|.+||+.+. +.+..+........ ..+.+..+.+. |. ++...++=+..+.|.++|+.+++.-....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~----~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~- 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE----KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH- 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC----CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc----cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc-
Confidence 4678899888 88777765433222 23457778877 22 22233444467889999998875322110
Q ss_pred CCCccccCCC----CcCCCc----ccceEEEEEcCC----CCeeEeecCCcEEEEecCCCCCCCCCCCCCCCcccccccc
Q 011160 245 GQPADYFCPP----NLIGDE----QVGITGLAFSDQ----SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (492)
Q Consensus 245 ~~~~~~~~~~----~~~~~~----~~~i~~~~~s~~----~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (492)
..+.+. ....+. ...+..++++|+ ++.|.-..-..-++|.+.+......
T Consensus 199 ----~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~--------------- 259 (381)
T 3q6k_A 199 ----PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQK--------------- 259 (381)
T ss_dssp ----GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSST---------------
T ss_pred ----CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCc---------------
Confidence 000010 011111 247899999998 6777666544444454443211000
Q ss_pred CCCCCCCCCCCCCCCccccCCceeecccc-ceeeeeEEeec-CCCcEEEEeeccCeEEEEecCC-C---eeeEEEecCC-
Q 011160 313 GSDHTSAASPSTANTDVRIAPQVYKGHRN-CVTVKGVNFFG-PKCEYVVSGSDCGRIFIWKKKG-G---ELIRVIEADR- 385 (492)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~s-~~g~~l~sg~~dg~i~iwd~~~-~---~~~~~~~~h~- 385 (492)
.....++. .|... ...-..+++ + .+|.++++--....|..|+..+ . +....+....
T Consensus 260 ---------------~~~~~v~~-~G~kg~~s~~~~~~~-D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~ 322 (381)
T 3q6k_A 260 ---------------GGKLNPEL-LGNRGKYNDAIALAY-DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSR 322 (381)
T ss_dssp ---------------TCCCCCEE-EEECCTTCCEEEEEE-CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTT
T ss_pred ---------------chhhceEE-eeecCCCCCcceEEE-eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCC
Confidence 00111111 12221 001233444 5 6787788878889999999865 1 1223332111
Q ss_pred -ceeEEEeecCCCCeEEEe
Q 011160 386 -HVVNCIEPHPHSTVLASS 403 (492)
Q Consensus 386 -~~v~~~~~s~~~~~l~s~ 403 (492)
..+..+.+.+++.+.+..
T Consensus 323 l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 323 FVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CCSEEEEEECTTSCEEEEE
T ss_pred ccccCeEEECCCCeEEEEE
Confidence 236667766666554444
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.82 E-value=3.6 Score=41.02 Aligned_cols=301 Identities=11% Similarity=0.101 Sum_probs=155.7
Q ss_pred cceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecc------CcCcceEEEEecCCCCCceEEeecCCCcEEEEe
Q 011160 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (492)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 134 (492)
...|.++...++|.+.+. +.+| +.+++..++....-... -....|.++.... ++. |..|+..| +.++.
T Consensus 231 ~~~i~~i~~d~~g~lWig-T~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--~g~-lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 231 NNSIKSLALDGNGDLLAG-TDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ--EHN-IWLGTDYG-ISLSR 304 (758)
T ss_dssp EEEEEEEEECTTCCEEEE-ETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT--TCC-EEEEESSS-EEEEC
T ss_pred CCeEEEEEEcCCCCEEEE-eCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC--CCC-EEEEeCCc-ccccc
Confidence 346888888888875554 4444 77888766543221100 1224588887765 554 44555556 54443
Q ss_pred cccCCeeeeEEee-----cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc--ceeecCCCCCCCcceeecceE
Q 011160 135 ILERGGVETKLLG-----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLN 207 (492)
Q Consensus 135 ~~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~ 207 (492)
.. . ........ .....|.++.-..+|. |..|+.+| +..++..++... ..+..... ... .....|.
T Consensus 305 ~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~--lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~--~~~-l~~~~v~ 376 (758)
T 3ott_A 305 YN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGF--YWFGGANG-LIRFTDPAGERHDAIWYRMGDK--TYP-LSHNRIR 376 (758)
T ss_dssp CC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCC--EEEEETTE-EEEESCTTSSCCCCEEECTTCS--SSC-CSCSCEE
T ss_pred cC-C-ceeEEecccCCCCCCCceEEEEEEcCCCC--EEEeeCCc-ceeecccccccceeEEeccCCc--CCC-CCCCceE
Confidence 21 1 11111011 1234688888877773 45555554 666766553221 11111000 000 0223588
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEE
Q 011160 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (492)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~ 287 (492)
++.-.++ +. |..|+ ++-+..|+..+++....... ..........|.++...++|.+.++...+.+.++
T Consensus 377 ~i~~d~~-g~-lWigt-~~GL~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~ 444 (758)
T 3ott_A 377 HIYEDKE-QQ-LWIAT-DGSINRYDYATRQFIHYNIV---------DNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVV 444 (758)
T ss_dssp EEEECTT-SC-EEEEE-TTEEEEEETTTTEEEEEEEE---------CCC--CBSSSEEEEEECTTSEEEEEESSSCEEEE
T ss_pred EEEECCC-CC-EEEEe-CCcHhhcCcCCCcEEEeecC---------CCcCCCCCceEEEEEEcCCCCEEEEECCCceEEE
Confidence 8888776 33 44455 45789999877643211000 0000002346888888888877665556789999
Q ss_pred ecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecc--ccceeeeeEEeecCCCcEEE-Eeecc
Q 011160 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH--RNCVTVKGVNFFGPKCEYVV-SGSDC 364 (492)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~s~~g~~l~-sg~~d 364 (492)
+..+...... ........+... -....|.++.. +++|.+-+ .|+..
T Consensus 445 ~~~~~~~~~~------------------------------~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi~~~t~~ 493 (758)
T 3ott_A 445 DKHKLMQSTS------------------------------GQYIAEQNYSVHNGLSGMFINQIIP-DNEGNVWVLLYNNK 493 (758)
T ss_dssp EHHHHHHCCS------------------------------SEEECSEEECGGGTCSCSCEEEEEE-CTTSCEEEEETTCS
T ss_pred ccccccccCC------------------------------cceecccccccccccccceeeeEEE-cCCCCEEEEccCCC
Confidence 8653100000 000000000000 01112777877 88888766 34444
Q ss_pred CeEEEEecCCCeeeEEEec---CCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCc
Q 011160 365 GRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (492)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (492)
-|..+|..+++....... ....+.++....+|.+.+.. . +-|..++..+++...
T Consensus 494 -Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~~~ 550 (758)
T 3ott_A 494 -GIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H-GGVMRINPKDESQQS 550 (758)
T ss_dssp -SEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T-TEEEEECC--CCCCB
T ss_pred -CcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c-CceEEEecCCCceEE
Confidence 478889877765432211 12357888888888866544 3 348888887765443
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.17 E-value=8.4 Score=33.16 Aligned_cols=178 Identities=10% Similarity=0.090 Sum_probs=92.1
Q ss_pred EEEcCCCCEEEEecCC--------------CeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeec--CCCcE
Q 011160 67 VSFNTDGDILISGSDD--------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQV 130 (492)
Q Consensus 67 ~~~s~~~~~l~s~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v 130 (492)
--++++|.+|+-+... ..|+..++..++. ..+ ... . +..|++ ++++|+-.. .++.-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l-~~~--~--~~~~s~--~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVL-DPD--P--CIYASL--IGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEE-ECS--C--EEEEEE--ETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEe-ecC--C--ccEEEE--eCCEEEEEeecCCCCc
Confidence 3457888888776543 3577777776553 223 111 1 236777 788888665 34444
Q ss_pred EEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEE
Q 011160 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (492)
Q Consensus 131 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (492)
.||.+........+ +..+.. .+++|++..+..+......|...++..+.....+.. .. ...
T Consensus 130 ~Iy~~~~dGs~~~~-lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-------------~~-~~~ 190 (302)
T 3s25_A 130 SLYRIRIDGEEKKK-IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-------------NC-YKP 190 (302)
T ss_dssp EEEEEETTSCCCEE-EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS-------------CE-EEE
T ss_pred eEEEEECCCCCeEE-EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-------------Cc-cce
Confidence 55544433222211 333322 456777865555555467888888876654333220 11 123
Q ss_pred EcCCCCceEEEecCC-CeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecC---CcEEE
Q 011160 211 IDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYL 286 (492)
Q Consensus 211 ~~p~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---~~i~~ 286 (492)
++|+++.++.+...+ ..|..-++...... .+. ...+ ..|+|++++|.-+.+ +.|..
T Consensus 191 ~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~---------------~Lt---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~ 250 (302)
T 3s25_A 191 VVLDDTNVYYMDVNRDNAIVHVNINNPNPV---------------VLT---EANI--EHYNVYGSLIFYQRGGDNPALCV 250 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEECSSSCCCE---------------ECS---CSCE--EEEEEETTEEEEEECSSSCEEEE
T ss_pred eeecCCEEEEEEcCCCcEEEEEECCCCCeE---------------EEe---CCCc--ceEEECCCEEEEEECCCCcEEEE
Confidence 558754444443332 35555555543211 111 1122 237788888776532 34666
Q ss_pred EecCC
Q 011160 287 FTQDM 291 (492)
Q Consensus 287 ~d~~~ 291 (492)
-+++.
T Consensus 251 ~~~DG 255 (302)
T 3s25_A 251 VKNDG 255 (302)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 66554
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.46 E-value=11 Score=32.08 Aligned_cols=229 Identities=14% Similarity=0.049 Sum_probs=119.5
Q ss_pred cceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCC
Q 011160 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (492)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (492)
..|..++... ...++. . ||.|..|-......... -......|..|+..... .++. . ||.|+.|-.....
T Consensus 24 ~~i~~ia~G~---~h~~~l-~-~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 24 SGVDAIAGGY---FHGLAL-K-GGKVLGWGANLNGQLTM--PAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDG 92 (282)
T ss_dssp SSCCEEEECS---SEEEEE-E-TTEEEEEECCSSSTTSC--CGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTTS
T ss_pred CCCcEEEeCC---CeEEEE-E-CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCC
Confidence 4677777653 333444 4 89999997655433221 11122467777776543 4444 4 8999999866543
Q ss_pred ccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccce
Q 011160 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (492)
.+..... ....|..++.... ..+.-. +|.|+.|-........ .+ ......|
T Consensus 93 qlg~P~~----------~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg-----~~----------~~~~~~i 143 (282)
T 3qhy_B 93 QTTVPAE----------ARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTT-----VP----------AEAQSGV 143 (282)
T ss_dssp TTCCCGG----------GSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTS-----CC----------GGGGSSE
T ss_pred CCCCCcc----------cCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCC-----CC----------ccCCCCe
Confidence 3221100 1125777777653 333344 9999999775532211 01 1123457
Q ss_pred EEEEEcCCCCeeEeecCCcEEEEecCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCceeecccccee
Q 011160 265 TGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (492)
Q Consensus 265 ~~~~~s~~~~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (492)
..++......+++. ++.++.|-......... .... .. .
T Consensus 144 ~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~-----------------------------------p~~~---~~--~ 181 (282)
T 3qhy_B 144 TALDGGVYTALAVK--NGGVIAWGDNYFGQTTV-----------------------------------PAEA---QS--G 181 (282)
T ss_dssp EEEEECSSEEEEEE--TTEEEEEECCTTSTTSC-----------------------------------CGGG---GS--S
T ss_pred EEEEcccCEEEEEE--CCEEEEecCCCCCCCCC-----------------------------------ceec---CC--C
Confidence 77766544433333 78899997654211100 0000 11 2
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEecCCceeEEEeecCCCCeEEEeeCCCCEEEeccCCCCCCcc
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 422 (492)
|..++. ... ..++. .+|.|+.|-....-.+..-......|..++...... ++.. ||.|+.|--....+..+
T Consensus 182 v~~i~~-G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~gq~~v 252 (282)
T 3qhy_B 182 VDDVAG-GIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK--NGKVIAWGSSRTAPSSV 252 (282)
T ss_dssp EEEEEE-CSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCCCCGGG
T ss_pred eEEEEe-cCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCCccccC
Confidence 666665 333 23333 599999997644222111011113466676554333 3333 89999997765444433
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.04 E-value=0.34 Score=45.09 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCc---------cceeecCCCCCCCcceeecceEEEEEcCCCCceEEE
Q 011160 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (492)
Q Consensus 151 ~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (492)
.....+.++|||.++++++-.+.++.++|++.... ...+..... -.......+|.++ ++...+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-------~GlGPlHt~Fd~~-G~aYTt 394 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-------LGLGPLHTTFDGR-GNAYTT 394 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-------CCSCEEEEEECSS-SEEEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-------CCCcccEEEECCC-CceEee
Confidence 34467889999987777778889999999884221 111111110 2234677899998 566677
Q ss_pred ecCCCeEEEEecccc
Q 011160 222 AGSDEYTRLYDIRKY 236 (492)
Q Consensus 222 ~~~dg~v~i~d~~~~ 236 (492)
.--|..|.-|++...
T Consensus 395 lfidSqvvkWni~~a 409 (638)
T 3sbq_A 395 LFIDSQVVKWNMEEA 409 (638)
T ss_dssp ETTTTEEEEEEHHHH
T ss_pred eeecceEEEEeccHH
Confidence 779999999999764
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.67 E-value=17 Score=33.60 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCC--eeEeecCCcEEEEecC
Q 011160 263 GITGLAFSDQSE--LLVSYNDEFIYLFTQD 290 (492)
Q Consensus 263 ~i~~~~~s~~~~--~l~~~~~~~i~~~d~~ 290 (492)
..+.|+|.|+|. +|++-..+.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 467899999985 7777778889999643
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.11 E-value=19 Score=32.33 Aligned_cols=160 Identities=9% Similarity=0.042 Sum_probs=73.2
Q ss_pred cceEEEEEEcC--CCCEEEEecCCC----eEEEEECCCCceeeeecc-----C--------cCcceEEEEecCCCC-Cce
Q 011160 61 RGCVNTVSFNT--DGDILISGSDDR----RVILWDWKTERVKLSFHS-----G--------HNDNVFQAKIMPFTD-DRS 120 (492)
Q Consensus 61 ~~~v~~~~~s~--~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~-----~--------~~~~v~~~~~~~~~~-~~~ 120 (492)
...|.+|++.| .+.+.+.+ ..| .|... ...+..-..+.. . ....|.++++.|. + ...
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHA-SEPGT 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCT-TSTTC
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCC-CCCCE
Confidence 45799999998 45554443 333 33332 233332111110 0 1125778888862 2 455
Q ss_pred EEeecCCCcEEEEecccCCeeeeEE--ee----------------cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCC
Q 011160 121 IVTCAADGQVRHAQILERGGVETKL--LG----------------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (492)
Q Consensus 121 l~~~~~dg~v~iw~~~~~~~~~~~~--~~----------------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (492)
|+++...+.|.. ...+....... .. .....+.+|.+.|..+..++.+..++.|...+ ..
T Consensus 131 l~~g~~~ggl~~--S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-Dg 207 (394)
T 3b7f_A 131 WYAGTSPQGLFR--STDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DA 207 (394)
T ss_dssp EEEEEETTEEEE--ESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-ST
T ss_pred EEEEecCCcEEE--EcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CC
Confidence 666655554433 33322211110 10 01235789999885434455555445444432 22
Q ss_pred CCccceeecCCCC---CCCcceeecceEEEEEcCCCCceEEEecCCC
Q 011160 183 GAATELFTCRPID---DRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (492)
Q Consensus 183 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (492)
++.-..+...... ..........+.++.++|.++..|+.+...+
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 2221111100000 0000000124788999986556777766544
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.03 E-value=7.9 Score=39.65 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.2
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (492)
..|.+++..++..+++|-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35778888888899999999999999999999987664
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=84.34 E-value=33 Score=33.71 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=22.5
Q ss_pred CCCCCceEee----c-cCcceEEEEeeccCcchh
Q 011160 6 NNNNNKRART----S-VDKALVDVWLRELGQLST 34 (492)
Q Consensus 6 ~~~~~~~l~t----~-~~dg~v~~w~~~~g~~~~ 34 (492)
++|++++++. | +.-..|+++|+.+++.+.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~ 170 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK 170 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC
Confidence 7889998665 3 334689999999998874
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.06 E-value=21 Score=36.51 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeec
Q 011160 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (492)
Q Consensus 152 ~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (492)
.+.+++..++. .++++-+.|+++++|++.+++++.....
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 46677777776 5789999999999999999998876654
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.18 E-value=22 Score=30.10 Aligned_cols=183 Identities=15% Similarity=0.094 Sum_probs=97.7
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeee
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 142 (492)
.|..++...... ++. . ||.|..|-......+. +.......|..++... ...++. . ||.|..|-........
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg-~p~~~~~~i~~ia~G~---~hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGN---YHSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTS-CCGGGGSCCCEEEECS---SEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCC-CCccCCCCEEEEEeCC---CEEEEE-E-CCEEEEeeCCCCCCCC
Confidence 455666543322 222 4 7888888755322211 1112234677777653 344444 4 8999999765433221
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEe
Q 011160 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (492)
. -..-...|..|+..... . +.-. +|.|+.|-......+..... ....|..++.... ..++.
T Consensus 96 ~--P~~~~~~v~~ia~G~~h--s-~al~-~G~v~~wG~n~~gqlg~~~~----------~~~~i~~i~~G~~--~~~~l- 156 (282)
T 3qhy_B 96 V--PAEARSGVDAIAAGAWA--S-YALK-DGKVIAWGDDSDGQTTVPAE----------AQSGVTALDGGVY--TALAV- 156 (282)
T ss_dssp C--CGGGSSSEEEEEEETTE--E-EEEE-TTEEEEEECCTTSTTSCCGG----------GGSSEEEEEECSS--EEEEE-
T ss_pred C--CcccCCCeEEEECcCCE--E-EEEe-CCeEEEecCCCCCcCCCCcc----------CCCCeEEEEcccC--EEEEE-
Confidence 1 01112467778776543 3 3334 89999997655333211100 2234777776543 33333
Q ss_pred cCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCC
Q 011160 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 223 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
. +|.|+.|-........ .|. .....|..++......+++ .++.++.|-...
T Consensus 157 ~-~G~v~~wG~n~~gqlg-----~p~----------~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 157 K-NGGVIAWGDNYFGQTT-----VPA----------EAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp E-TTEEEEEECCTTSTTS-----CCG----------GGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred E-CCEEEEecCCCCCCCC-----Cce----------ecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence 3 7999999776533211 010 1134577777655444433 688999997654
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.02 E-value=31 Score=31.75 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=57.1
Q ss_pred eEEEEEEcCCCC-EEEEecCCCeEEEEECCCCc---eeeeec----cC----cCcceEEEEecCCCC----CceEEeecC
Q 011160 63 CVNTVSFNTDGD-ILISGSDDRRVILWDWKTER---VKLSFH----SG----HNDNVFQAKIMPFTD----DRSIVTCAA 126 (492)
Q Consensus 63 ~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~---~~~~~~----~~----~~~~v~~~~~~~~~~----~~~l~~~~~ 126 (492)
.-+.|+|.|+|. .|+.+...|.|++++..... .+..+. .+ .......|+|+| + +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P--~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP--NYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT--THHHHCEEEEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC--CCcCCCEEEEEEeC
Confidence 346899999995 34445667999999754221 112111 11 145688999998 5 333333221
Q ss_pred --C----------CcEEEEecccC----------CeeeeEEeecCCCceEEEEEcCCCCcEEEEEcC
Q 011160 127 --D----------GQVRHAQILER----------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (492)
Q Consensus 127 --d----------g~v~iw~~~~~----------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 171 (492)
+ ..|.-|.+... +.+..............|+|.||| ++.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCC
Confidence 1 13444555321 111111111223456789999999 56565544
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=75.09 E-value=66 Score=31.61 Aligned_cols=207 Identities=8% Similarity=-0.028 Sum_probs=101.5
Q ss_pred eEEEEE-EcCCCCEEEEe-----cCCCeEEEEECCCCceeeeeccCcC-c------ceEEEEecCCCCCceEEee-----
Q 011160 63 CVNTVS-FNTDGDILISG-----SDDRRVILWDWKTERVKLSFHSGHN-D------NVFQAKIMPFTDDRSIVTC----- 124 (492)
Q Consensus 63 ~v~~~~-~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~-~------~v~~~~~~~~~~~~~l~~~----- 124 (492)
....+. ++|++++++.+ +.-..++++|+.+++.+..-+..-. . ....++|.. +...+++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d--~~~~~~~~~~~~~ 207 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN--KDTIIFNLVLHKN 207 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE--TTEEEECCCCSTT
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC--CCEEEEEeCCCCC
Confidence 445555 89999887653 2334799999999887643212000 0 113347764 44444432
Q ss_pred -----cCCCcEEEEecccCCeeeeEEeecCCCce-EEEEEcCCCCc----EEEEEcCC---CcEEEEeCCCCCc-cceee
Q 011160 125 -----AADGQVRHAQILERGGVETKLLGKHQGRA-HKLAIEPGSPH----VFYTCGED---GLVQHFDLRTGAA-TELFT 190 (492)
Q Consensus 125 -----~~dg~v~iw~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~----~l~~~~~d---g~i~iwd~~~~~~-~~~~~ 190 (492)
+....|+.|.+.+........+.+....+ .....++++.. .+++.+.+ ..+.+.+...... ...+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 12256888888765433333344433333 24455666643 34443322 3456666553211 11111
Q ss_pred cCCCCCCCcceeecceEEEEEcCCCCceEEEe----------cCCCeEEEEecccccccCCCCCCCCccccCCCC-cCCC
Q 011160 191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA----------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGD 259 (492)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 259 (492)
... .. .+..+.. +.+++.. ...+.|...++.+...... ... .... +...
T Consensus 288 ~~~-----------~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~--~~~~~~~~~ 347 (711)
T 4hvt_A 288 MPS-----------DA-TLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTES-----DKT--SLKILFTPT 347 (711)
T ss_dssp SCT-----------TC-EEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGG-----GCT--TCEEEECCC
T ss_pred cCC-----------cc-eEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCccccccc-----ccc--cceEEECCC
Confidence 110 01 1122233 4444432 1466788888876421000 000 0011 2223
Q ss_pred cccceEEEEEcCCCCeeEeec-CC--cEEEEecCCC
Q 011160 260 EQVGITGLAFSDQSELLVSYN-DE--FIYLFTQDMG 292 (492)
Q Consensus 260 ~~~~i~~~~~s~~~~~l~~~~-~~--~i~~~d~~~~ 292 (492)
....+..+.+..+ .++++.. ++ .++++++.++
T Consensus 348 ~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 348 ANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp TTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETT
T ss_pred CCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCC
Confidence 3556888899876 4555544 44 4788877653
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=70.96 E-value=18 Score=34.46 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=41.7
Q ss_pred eeEEeecCCCcEEEEeec------------cCeEEEEecCCCeeeEEEecCC-ceeEEEeecCCCCeEEEe
Q 011160 346 KGVNFFGPKCEYVVSGSD------------CGRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTVLASS 403 (492)
Q Consensus 346 ~~~~~~s~~g~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~ 403 (492)
-.|+| +|.|.++++-.. +..+.+.+..++++.+.+.++. .+++.++|+||++.|...
T Consensus 479 DNL~f-d~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGF-DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEE-CTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEE-CCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45777 999997775332 1346667777888877777654 579999999999877654
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.82 E-value=52 Score=28.55 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=83.5
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
+...+++.+.+|.|+--.+..-..... .+ .....++.. +.+..+........|+..+..|.+..+
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r----------~G----~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRS----------GG----IVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCS----------SC----EESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhcccc----------Cc----eEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 466788888888888877664221100 00 011223333 334444444445667777888888888
Q ss_pred ECC--CCce-------eeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEEEecccCC-------eeeeEEeecCCCc
Q 011160 89 DWK--TERV-------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-------GVETKLLGKHQGR 152 (492)
Q Consensus 89 d~~--~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-------~~~~~~~~~~~~~ 152 (492)
... .-.. +..+.-.....|.++...+ ++..|+.++..|.++.-.+..-. .+....+..-.+.
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~--~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC--TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred ECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC--CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 766 2111 1111112344577766665 66788899999999888764321 1221112221234
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCC
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~ 181 (492)
+-.+....+. ..++..+.+|.+..+...
T Consensus 251 lv~~~~~~~~-~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 251 LVGALIVDDD-SELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEEECTT-CEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEeCCC-ccEEEEcCCCeEEEEehh
Confidence 4444433333 345666777777777654
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.94 E-value=5.8 Score=41.67 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=31.5
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (492)
.+.+++..++..+|++-+.|+++|||++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556677788899999999999999999999987764
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=68.63 E-value=64 Score=28.72 Aligned_cols=209 Identities=14% Similarity=0.048 Sum_probs=88.4
Q ss_pred CEEEEecCCCeEEEEECCC-Cceeeee-ccCcCcceEEEEecCCCCCceEEeecCCC--cEEEEecccCCeeeeEE----
Q 011160 74 DILISGSDDRRVILWDWKT-ERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERGGVETKL---- 145 (492)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~---- 145 (492)
..|..|...| +.+++... +..-... .......|.+|++.|. +...|++++..| .-.||....+.......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~-~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPR-EPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSS-STTCEEEEEEC--CCEEEEEESSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCC-CCCeEEEEecCCCCCccEEEeCCCCCCceECCccc
Confidence 3566677766 54554332 2211111 0122356999999873 344555555444 01233332222111100
Q ss_pred -eec--------CCCceEEEEEcCCC-CcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCC---------Ccceeecce
Q 011160 146 -LGK--------HQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR---------RNYMTVVNL 206 (492)
Q Consensus 146 -~~~--------~~~~v~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~v 206 (492)
+.. ....|.++++.|.. +..+++++..+.|...+- .++.-..+........ .+......+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 110 11257789998742 345666666665554432 2222111111000000 000022357
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCC-CCeeEeecCCcEE
Q 011160 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIY 285 (492)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~i~ 285 (492)
.+|.++|.+...++.+..++.|...+-........ ... ....+.+... ......+.++.++|. ...|.++..+.|+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~-~~~-~~~~~~p~~~-~~~g~~~~~i~~~~~~~~~l~vg~~~gl~ 256 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPL-NRG-CAANFLPDPN-VEFGHDPHCVVQHPAAPDILYQQNHCGIY 256 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEEC-CTT-CCCTTSSSSS-SSSCBCEEEEEECSSSTTEEEEEETTEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCCCCCceEC-CCC-ccccccCCCc-cccCcceeEEEECCCCCCEEEEEcCCeEE
Confidence 88999985444555555445444332111110000 000 0000000000 000135889999986 3556666656665
Q ss_pred EEe
Q 011160 286 LFT 288 (492)
Q Consensus 286 ~~d 288 (492)
..+
T Consensus 257 ~s~ 259 (394)
T 3b7f_A 257 RMD 259 (394)
T ss_dssp EEE
T ss_pred EeC
Confidence 544
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=65.51 E-value=32 Score=32.51 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.9
Q ss_pred eeeEEeecCCCcEEEEeec------------cCeEEEEecCCCeeeEEEecC-CceeEEEeecCCCCeEEEe
Q 011160 345 VKGVNFFGPKCEYVVSGSD------------CGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASS 403 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~ 403 (492)
...|.| +++|.+.++-.. ...|..++..++++...+.+. ...++.++|+||++.|..+
T Consensus 478 PDnL~f-d~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGF-DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEE-CTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEE-CCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 467787 999987773211 226777787788877766654 3579999999999977665
No 364
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=61.49 E-value=93 Score=28.05 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=80.4
Q ss_pred ceEEEEecCCCCCceEEeecCCCcEEEEecccCCe-----------eeeEEeecCCCceEEEEEcCCCCcEEEEEcCCCc
Q 011160 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-----------VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (492)
Q Consensus 106 ~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-----------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~ 174 (492)
.|..++. .....+.-..+|.|..|-...... .....+. ....|..|+.... ..++-..+|.
T Consensus 76 ~v~~va~----G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~---hs~al~~~G~ 147 (423)
T 3mvd_K 76 DAVDISA----GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDS---HSACLLEDGR 147 (423)
T ss_dssp SEEEEEE----CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSS---EEEEEETTSC
T ss_pred CceEEee----CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcC---eEEEEeCCCe
Confidence 4656655 344555566789999996543211 0001111 2345666666443 3455577899
Q ss_pred EEEEeC--CCCCcccee----ecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCC--
Q 011160 175 VQHFDL--RTGAATELF----TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ-- 246 (492)
Q Consensus 175 i~iwd~--~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-- 246 (492)
|+.|-. ...-.+..- ...+... .....|..++... ...+.-..+|.|+.|-......+.......
T Consensus 148 v~~wG~~~n~~GqlG~~~~~~~~~p~~~----~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 220 (423)
T 3mvd_K 148 VFAWGSFRDSHGNMGLTIDGNKRTPIDL----MEGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQGQLGRLSERSIS 220 (423)
T ss_dssp EEEEECEECSSSEEESBTTBCEEEEEES----STTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTSSCCTTTTT
T ss_pred EEEEeCCCCCCCCcCcCCCCCCceeeEe----cCCCcEEEEecCC---CeEEEEecCCeEEEeeCCcCCccCCCcccccc
Confidence 999975 221111000 0000000 0122466666543 355556789999999765433222110000
Q ss_pred ------CccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecCC
Q 011160 247 ------PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 247 ------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
......+..+.......|..++......+++...++.++.|-...
T Consensus 221 ~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~ 271 (423)
T 3mvd_K 221 GEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNN 271 (423)
T ss_dssp SCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECT
T ss_pred cccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCC
Confidence 000011111111223345666554333233324577899987654
No 365
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=61.04 E-value=1.4e+02 Score=29.86 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=77.0
Q ss_pred cceEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeccC------cCcceEEEEecCCCCCceEEeecCCCc----
Q 011160 61 RGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (492)
Q Consensus 61 ~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~dg~---- 129 (492)
.+.|.+|+++|. ...++.++..+.|...+ +.|+.-..+... ....+.+|++.|. +...++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~-~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPN-NPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETT-EEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCC-CCCEEEEEeCccCCCcc
Confidence 468999999995 35556666666665544 334332222111 1246999999882 2344444432211
Q ss_pred EEEEecccCCeeeeEE-ee----c---CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCCCCCCCcce
Q 011160 130 VRHAQILERGGVETKL-LG----K---HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (492)
Q Consensus 130 v~iw~~~~~~~~~~~~-~~----~---~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (492)
-.||.-..+...-... .. . ....+..++++|..+..++.+...+.|. .....++.=..+...+... .
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~--~-- 166 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAF--T-- 166 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCC--S--
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCcccc--C--
Confidence 3445444333221111 11 0 0113567888887656667766444332 1222233222221110000 0
Q ss_pred eecceEEEEEcCCCCceEEEecCC
Q 011160 202 TVVNLNAIAIDPRNANLFAVAGSD 225 (492)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~d 225 (492)
....+..+.++|.++..++++..+
T Consensus 167 ~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 167 NGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCCeEEEEECCCCCCEEEEEEcC
Confidence 113478899998655566666544
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=60.50 E-value=35 Score=32.57 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=38.7
Q ss_pred EEEEEEcCCCCEEEEecCC------------CeEEEEECCCCceeeeeccC-cCcceEEEEecCCCCCceEEee
Q 011160 64 VNTVSFNTDGDILISGSDD------------RRVILWDWKTERVKLSFHSG-HNDNVFQAKIMPFTDDRSIVTC 124 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~ 124 (492)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++. ..|+.+ ....++.++|+| +++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~P~gaE~TG~~fsp--Dg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECT--TSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeCCCCccCcCeeECC--CCCEEEEE
Confidence 4568999999876654322 2455556666665 444344 456899999999 88776654
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=55.17 E-value=1.1e+02 Score=27.10 Aligned_cols=213 Identities=13% Similarity=0.093 Sum_probs=102.3
Q ss_pred eEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEE
Q 011160 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER-----------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (492)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 131 (492)
.+..++++.-..+.+.-..+|.|..|-..... ....+..-....|..++.. ....+....+|.|.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G----~~hs~alt~~G~v~ 181 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG----GAHSACVTAAGDLY 181 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC----SSEEEEEETTSCEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC----cCeEEEEeCCCeEE
Confidence 44555666555666666778999999643211 1111111112256666653 34445556689999
Q ss_pred EEecccCCe---------eeeEEee-cCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccce------eecCCCC
Q 011160 132 HAQILERGG---------VETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL------FTCRPID 195 (492)
Q Consensus 132 iw~~~~~~~---------~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~ 195 (492)
.|-...... .....+. .....|..++..... ...++-..+|.|+.|-....-.+.. .......
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 260 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec
Confidence 996533111 1111111 123456677665422 2445567789999996543211100 0000000
Q ss_pred CCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCe
Q 011160 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (492)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 275 (492)
.. ....|..++... ...+.-..+|.|+.|=......+..-. ......|..+.......|..++.... ..
T Consensus 261 ~~----~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~l~~~~v~~ia~G~~-h~ 329 (389)
T 3kci_A 261 SL----TGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGS---DDHVRRPRQVQGLQGKKVIAIATGSL-HC 329 (389)
T ss_dssp GG----TTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSS---CCCEEEEEECGGGTTCCEEEEEECSS-EE
T ss_pred cc----CCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCC---CccccCCeEeccCCCCCEEEEEeccC-eE
Confidence 00 111355666543 344455789999999765433222110 00000111111111234666655332 24
Q ss_pred eEeecCCcEEEEecCC
Q 011160 276 LVSYNDEFIYLFTQDM 291 (492)
Q Consensus 276 l~~~~~~~i~~~d~~~ 291 (492)
++...++.++.|-...
T Consensus 330 ~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 330 VCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEETTCCEEEEECCT
T ss_pred EEECCCCCEEEeeCCC
Confidence 5555678899997654
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.68 E-value=13 Score=39.06 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=31.0
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEe
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~ 382 (492)
+.+++. .++..++++-+.|+++|||++.+++++.+..
T Consensus 240 ~vs~~~-~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEE-ETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeec-cCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455555 6788999999999999999999999987753
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.63 E-value=22 Score=34.65 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=29.5
Q ss_pred ceEEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 011160 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (492)
..|.++.+ +..+|++-+.|.++|+|++.++.++...
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 45666665 3679999999999999999999887665
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=54.47 E-value=1.2e+02 Score=27.03 Aligned_cols=168 Identities=10% Similarity=0.088 Sum_probs=90.3
Q ss_pred ceEEEEEEcCCCCEEEE--ecC-------------CCeEEEEECCCC--ceeeeeccC-----cCcceEEEEec---CC-
Q 011160 62 GCVNTVSFNTDGDILIS--GSD-------------DRRVILWDWKTE--RVKLSFHSG-----HNDNVFQAKIM---PF- 115 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~s--~~~-------------d~~i~iwd~~~~--~~~~~~~~~-----~~~~v~~~~~~---~~- 115 (492)
-.|..+...+++++-+. |-. --.|.+||+.++ +.++++.-. ....+..+++. |.
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 46777777776654332 211 136889999999 887776321 23467788876 20
Q ss_pred -CCCceEEeec-CCCcEEEEecccCCeeeeEE------------eecC----CCceEEEEEcCC----CCcEEEEEcCCC
Q 011160 116 -TDDRSIVTCA-ADGQVRHAQILERGGVETKL------------LGKH----QGRAHKLAIEPG----SPHVFYTCGEDG 173 (492)
Q Consensus 116 -~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~------------~~~~----~~~v~~i~~~~~----~~~~l~~~~~dg 173 (492)
.++.+++.+. ..+.|.|+|+.+++...... +.+. ...|..|+++|+ +. .|+-....+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~-~LYf~plss 245 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNR-PAYYLAGSA 245 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCC-EEEEEESSC
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCe-EEEEEECCC
Confidence 0134444443 46779999998766433210 0011 246788889887 43 444443322
Q ss_pred -cEEEEe---CCCCCccceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCCeEEEEeccc
Q 011160 174 -LVQHFD---LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (492)
Q Consensus 174 -~i~iwd---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~ 235 (492)
.+.--. ++.......++.... ++ ....-..+++.+.++.++++--....|..|+..+
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~---kg--~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGN---RG--KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEE---CC--TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CcEEEEEHHHhhCcchhhceEEeee---cC--CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 233222 122211111111000 00 0123345677644477888888889999999875
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=52.67 E-value=74 Score=30.11 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=40.6
Q ss_pred ceEEEEEEcCCCCEEE-EecC-----------CCeEEEEECCCCceeeeeccC-cCcceEEEEecCCCCCceEEee
Q 011160 62 GCVNTVSFNTDGDILI-SGSD-----------DRRVILWDWKTERVKLSFHSG-HNDNVFQAKIMPFTDDRSIVTC 124 (492)
Q Consensus 62 ~~v~~~~~s~~~~~l~-s~~~-----------d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~ 124 (492)
.....|.|.++|.+.+ |-.. .+.|..++..+++.. .+..+ ....++.++|+| |++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~-~fl~~P~~aEpnGiafSP--D~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR-RFMVGPIGCEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEE-EEEECCTTCEEEEEEECT--TSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEE-EEEeCCCCccccCCEECC--CCCEEEEE
Confidence 4567899999998777 3221 125666676667654 34333 345789999999 98887765
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=46.86 E-value=2.2e+02 Score=27.93 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.3
Q ss_pred eeeEEeecCCCcEEEEeeccCeEEEEecCCCeeeEEEec
Q 011160 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (492)
Q Consensus 345 v~~~~~~s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 383 (492)
|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444444 477999999999999999999998877643
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=39.23 E-value=1.9e+02 Score=25.02 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=123.3
Q ss_pred CCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecCccceEEEEEEcCCCCEEEEecCCCeEEEE
Q 011160 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (492)
Q Consensus 9 ~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (492)
....+++-+.+|.|+--.+.+-+... .+.. .. .-..++ ....+..+........|+.-+..|.+.-.
T Consensus 2 ~E~v~v~ls~~GyiKr~~~~~y~~~~-------rgg~-g~----~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~ 68 (327)
T 3uc1_A 2 AEDVVVTITETGYAKRTKTDLYRSQK-------RGGK-GV----QGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRA 68 (327)
T ss_dssp CCEEEEEEETTSEEEEEEHHHHHHHC--------------------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEE
T ss_pred CccEEEEEeCCCEEEEeeHHHhhhcc-------cCCC-Cc----cccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678888889988866544321110 0000 00 001122 23344444444444555555566765543
Q ss_pred ---ECCC------Cceeeeecc-CcCcceEEEE-ecCCCCCceEEeecCCCcEEEEecccCCe-----eeeEEeecCCCc
Q 011160 89 ---DWKT------ERVKLSFHS-GHNDNVFQAK-IMPFTDDRSIVTCAADGQVRHAQILERGG-----VETKLLGKHQGR 152 (492)
Q Consensus 89 ---d~~~------~~~~~~~~~-~~~~~v~~~~-~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~ 152 (492)
++.. |..+..++. .....|.++. ...+.+..++++++.+|.++.-.+..-.. .....+.. .+.
T Consensus 69 ~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~ 147 (327)
T 3uc1_A 69 KAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDE 147 (327)
T ss_dssp EGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCC
T ss_pred EHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCE
Confidence 3332 222222211 1234455543 33222577899999999999988765221 11112333 344
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCC--CCCcc----ceeecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC
Q 011160 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAAT----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (492)
Q Consensus 153 v~~i~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (492)
+..+...... ..++..+..|.+..+... .-... .-...... .....|.++...+. ...++..+..|
T Consensus 148 lv~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L------~~~d~Vv~~~~~~~-~~~ll~~T~~G 219 (327)
T 3uc1_A 148 LVGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF------NIDDRLLSLNVVRE-GTYLLVATSGG 219 (327)
T ss_dssp EEEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC------CTTCCEEEEEECCT-TCEEEEEETTS
T ss_pred EEEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC------CCCCEEEEEEEECC-CCEEEEEeCCC
Confidence 5544444444 356777888988888766 21110 00000000 02224555555544 45788888999
Q ss_pred eEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEE-EcCCCCeeEeecCCcEEEEecCC
Q 011160 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA-FSDQSELLVSYNDEFIYLFTQDM 291 (492)
Q Consensus 227 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~~~i~~~d~~~ 291 (492)
.++.-.+........... . .. ...+... ...+..+. ...+..+++....+.+..+....
T Consensus 220 ~~Krt~l~e~~~~~R~~~--G--~~-~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 220 YAKRTAIEEYPVQGRGGK--G--VL-TVMYDRR-RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEEGGGSCBCCTTSC--C--EE-SSCCCTT-TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred cEEEEEHHHccccCcCCC--c--EE-EEEecCC-CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 999888765443211000 0 00 0111111 22333333 33444556666677777776654
No 374
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=33.36 E-value=3.6e+02 Score=26.54 Aligned_cols=112 Identities=14% Similarity=0.035 Sum_probs=56.1
Q ss_pred ceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeecC-------CCceEEEEEcCCCCcEEEEEcCC------
Q 011160 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-------QGRAHKLAIEPGSPHVFYTCGED------ 172 (492)
Q Consensus 106 ~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~~~~~d------ 172 (492)
.|..|+++|. +...++++...+.|...+ .....-.. +..+ ...|.+|++.|..+..++++...
T Consensus 24 ~i~~i~~~p~-~~~~~~~~~~~ggv~rS~--D~G~tW~~-i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~ 99 (737)
T 2cn3_A 24 FMPGIVFNET-EKDLIYARAAIGGAYRWD--PSTETWIP-LLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWL 99 (737)
T ss_dssp CCCEEEECSS-STTCEEEECSSSCEEEEE--TTTTEEEE-CCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSS
T ss_pred eeeEEEECCC-CCCEEEEEecCCcEEEeC--CCCCCEEE-CcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccc
Confidence 7999999982 335566666556554443 33222211 2111 24589999999655455544321
Q ss_pred -CcEEEEeCC-CCCccceeecCCCC-C-CCcceeecceEEEEEcCCCCceEEEecC
Q 011160 173 -GLVQHFDLR-TGAATELFTCRPID-D-RRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (492)
Q Consensus 173 -g~i~iwd~~-~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (492)
+...||... .++.-..+...... . ..+ ...+..|+++|.++..++.+..
T Consensus 100 ~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g---~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 100 PNMGAILRSTDRGETWEKTILPFKMGGNMPG---RSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCCCEEEEESSSSSSCEEEECSSCCCTTSTT---TTSCCCEEECSSCTTCEEEECS
T ss_pred cCCccEEEeCCCCCCcccCCCCcccCCCcCc---ccccceEEECCCCCCEEEEeec
Confidence 123444433 33322222211000 0 000 0123578999876677777764
No 375
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=31.55 E-value=2.7e+02 Score=24.59 Aligned_cols=212 Identities=8% Similarity=0.025 Sum_probs=98.0
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------eeeeeccCcCcceEEEEecCCCCCceEEeecCCCcEEE
Q 011160 64 VNTVSFNTDGDILISGSDDRRVILWDWKTER-----------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (492)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 132 (492)
|..++.. ....+.-..||.|..|-..... ....+.......+..++.+. .....+.-..+|.|..
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~--G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS--GGKHCLALSSEGEVYS 130 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT--TCSEEEEEETTSCEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc--CCCeEEEEcCCCCEEE
Confidence 4444432 3344444567888888643211 11111111222345556655 5555666677899999
Q ss_pred EecccCCe---------eeeEEeec-CCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCcc------ceeecCCCCC
Q 011160 133 AQILERGG---------VETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT------ELFTCRPIDD 196 (492)
Q Consensus 133 w~~~~~~~---------~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~ 196 (492)
|-...... .....+.. ....|..|+.-.. ..++...+|.|+.|-....-.+ ..........
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~---hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~ 207 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA---HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA 207 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS---EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC---eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc
Confidence 96432111 11111221 1235666666443 3455667899999975432111 0000000000
Q ss_pred CCcceeecceEEEEEcCCCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCee
Q 011160 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (492)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 276 (492)
. ....+..++.... ....+....+|.|+.|-......+..-. ......+..+.......|..++.... ..+
T Consensus 208 ~----~~~~v~~ia~G~g-~~~t~~l~~~G~v~~wG~n~~GqLG~g~---~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~ 278 (389)
T 3kci_A 208 L----QGHRVVDIACGSG-DAQTLCLTDDDTVWSWGDGDYGKLGRGG---SDGCKVPMKIDSLTGLGVVKVECGSQ-FSV 278 (389)
T ss_dssp G----TTSCEEEEEECCS-SCEEEEEETTTEEEEEECCGGGTTSSSS---CCCEEEEEECGGGTTSCEEEEEEETT-EEE
T ss_pred c----CCCeEEEEEEcCC-CcEEEEEccCCEEEEEeCCCCCCCCCCC---CCCccccEEecccCCCcEEEEeCCCC-EEE
Confidence 0 1124566665431 2455566788999999765433222110 00000111111111223555554332 234
Q ss_pred EeecCCcEEEEecCC
Q 011160 277 VSYNDEFIYLFTQDM 291 (492)
Q Consensus 277 ~~~~~~~i~~~d~~~ 291 (492)
+...++.++.|-...
T Consensus 279 alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 279 ALTKSGAVYTWGKGD 293 (389)
T ss_dssp EEETTSCEEEEECCG
T ss_pred EEeCCCeEEEEeCCC
Confidence 445577899997543
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=30.30 E-value=4.1e+02 Score=26.18 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=56.7
Q ss_pred ceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecc--C----cCcceEEEEecCCCCCceEEeecCC-------
Q 011160 62 GCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHS--G----HNDNVFQAKIMPFTDDRSIVTCAAD------- 127 (492)
Q Consensus 62 ~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~~~l~~~~~d------- 127 (492)
+.|..|+++|.. ..+..+...+.|..++ ..++.-..+.. + ....|.+|++.|. +...++++...
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~-~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPV-DPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSS-STTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCC-CCCEEEEEeccccccccc
Confidence 389999999963 4455566556555554 23333222211 1 1246899999983 23344433211
Q ss_pred CcEEEEecccCCeeeeEEeecC--------CCceEEEEEcCCCCcEEEEEcCC
Q 011160 128 GQVRHAQILERGGVETKLLGKH--------QGRAHKLAIEPGSPHVFYTCGED 172 (492)
Q Consensus 128 g~v~iw~~~~~~~~~~~~~~~~--------~~~v~~i~~~~~~~~~l~~~~~d 172 (492)
+...||.-..+...-....... ...+..|+++|..+..++++...
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 1245666544433221111111 01246799999776677777643
No 377
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=29.53 E-value=4.3e+02 Score=26.27 Aligned_cols=117 Identities=13% Similarity=0.106 Sum_probs=57.4
Q ss_pred CcceEEEEecCCCCCceEEeecCCCcEEEEecccCCeeeeEEeec-------CCCceEEEEEcCCCCcEEEEEcCCCc--
Q 011160 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-------HQGRAHKLAIEPGSPHVFYTCGEDGL-- 174 (492)
Q Consensus 104 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~~dg~-- 174 (492)
...|.+|+++|. +...++++...+.|...+ .+...-.. +.. ....|.+|++.|..+..++++.....
T Consensus 14 ~g~i~~i~~~p~-~~~~~~a~~~~ggv~rS~--DgG~tW~~-~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 14 GGYITGIVAHPK-TKDLLYARTDIGGAYRWD--AGTSKWIP-LNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp CSCEEEEEECSS-STTCEEEEESSSCEEEEE--TTTTEEEE-SCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCcEEEEEECCC-CCCEEEEEecCCCEEEec--CCCCCeeE-CccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 458999999983 345666676666654433 33222211 221 12468999999865455555543211
Q ss_pred --EEEEe-CCCCCccceeecCCCCCCCcc-eeecceEEEEEcCCCCceEEEecCCC
Q 011160 175 --VQHFD-LRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNANLFAVAGSDE 226 (492)
Q Consensus 175 --i~iwd-~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (492)
-.||- ...++.-..+...... ... .....+..++++|.++..++.+...+
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~~~~~--~~~~~~~~~~~~iav~p~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYESPFPM--GANDMGRNNGERLAVNPFNSNEVWMGTRTE 143 (789)
T ss_dssp SCCEEEEESSTTSEEEEEECSSCC--CTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred cccEEEEECCCCCcceeccCCccc--CccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence 23333 3333322222111000 000 00012456788886556677766444
No 378
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.68 E-value=1.7e+02 Score=27.50 Aligned_cols=70 Identities=9% Similarity=0.064 Sum_probs=40.9
Q ss_pred eEEEEecCCCCCceEEeecCCCcEEEEecccCC----eeeeEEeecCCCceE-EEEEcCCCCcEEEEEcCCCcEEE
Q 011160 107 VFQAKIMPFTDDRSIVTCAADGQVRHAQILERG----GVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGEDGLVQH 177 (492)
Q Consensus 107 v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~dg~i~i 177 (492)
.++|+.....+...++.|..+|.|.-..+.... ......+.....+|. .|.+++++ ..|++++..+.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~-~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQ-LYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTS-SEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCC-CeEEEEecccccee
Confidence 445554442244567788889987665554332 122222333346775 89999987 46777777655544
No 379
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=24.17 E-value=3.1e+02 Score=22.86 Aligned_cols=77 Identities=9% Similarity=0.046 Sum_probs=40.2
Q ss_pred CCceEEEEEcC-CCCcEEEEEcCCCcEEEEeCCCCCccce--eecCCCCCCCcceeecceEEEEEcCCCCceEEEecCCC
Q 011160 150 QGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATEL--FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (492)
Q Consensus 150 ~~~v~~i~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (492)
...|..+.... +. ..++..+.+|.++...+..-. ... ...... . ....+..+..... ...++..+..|
T Consensus 67 ~e~i~~v~~~~~~~-~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~l---k---egD~l~~~~~~~~-~~~ill~T~~G 137 (276)
T 3no0_A 67 EEKIVGAFIREKFG-NRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKL---T---EGDEVVSIASSVD-ETHILLFTKKG 137 (276)
T ss_dssp TCCEEEEEEGGGSC-SEEEEEETTSEEEEEEGGGTT-TCSTTEECSCC---C---TTCCEEEEEECCS-SCEEEEEETTS
T ss_pred CCEEEEEECCcCCC-CEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEec---C---CCCEEEEEEEeCC-CCEEEEEECCC
Confidence 44555554321 33 478889999999998875532 110 000000 0 1123444444333 34666667777
Q ss_pred eEEEEeccc
Q 011160 227 YTRLYDIRK 235 (492)
Q Consensus 227 ~v~i~d~~~ 235 (492)
.+..+....
T Consensus 138 ~~~r~~~~e 146 (276)
T 3no0_A 138 RVARFSVRE 146 (276)
T ss_dssp EEEEEEGGG
T ss_pred EEEEEEhhh
Confidence 777776543
No 380
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=24.14 E-value=5.3e+02 Score=25.49 Aligned_cols=161 Identities=12% Similarity=0.082 Sum_probs=76.3
Q ss_pred CccceEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeccC-----------cCcceEEEEecCCCCCceEEeecC
Q 011160 59 KHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSG-----------HNDNVFQAKIMPFTDDRSIVTCAA 126 (492)
Q Consensus 59 ~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~l~~~~~ 126 (492)
+-.+.|.+|+++|.+ ..+..+...|.|.... +.|+.-..+... ....+.++++.|. +...++.+..
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~-~~~~~~~~~g 95 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPH-NPDRLYLAQG 95 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTT-CTTCEEEEEC
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCC-CCCEEEEEec
Confidence 356789999999965 5555555555554433 233322222111 2245899999883 2344443322
Q ss_pred C-----CcEEEEecccCCeee-eEEeecC-----CCc--eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCCccceeecCC
Q 011160 127 D-----GQVRHAQILERGGVE-TKLLGKH-----QGR--AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP 193 (492)
Q Consensus 127 d-----g~v~iw~~~~~~~~~-~~~~~~~-----~~~--v~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 193 (492)
. ....||.-..+...- ...+... ... ...++++|..+..++++...+.|. .....++.-..+....
T Consensus 96 ~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~ 174 (763)
T 3a0f_A 96 DYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLP 174 (763)
T ss_dssp SCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSC
T ss_pred ccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCc
Confidence 1 123455444332211 1111100 111 146888887655666666554333 2223333222111100
Q ss_pred CCCCCcceeecceEEEEEcCCCCceEEEecCCC
Q 011160 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (492)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (492)
. .......+..++++|.++..++.+..++
T Consensus 175 ~----~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 175 D----SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp C----CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred c----cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 0 0001124678899987555566555554
No 381
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=20.54 E-value=4e+02 Score=22.67 Aligned_cols=242 Identities=9% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCceEeeccCcceEEEEeeccCcchhhhhhhcccccccceeeeeeeEeecC-------ccceEEEEEEcCCCCEEEEec
Q 011160 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-------HRGCVNTVSFNTDGDILISGS 80 (492)
Q Consensus 8 ~~~~~l~t~~~dg~v~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~s~~~~~l~s~~ 80 (492)
|+...+++.+.+|.|+--.+.+-+... ..-.+ -...+..+........|+..+
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~--------------------~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT 60 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQR--------------------RGGKGKSAARIKEEDFIDRLLVANTHDHILCFS 60 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------------------CCEEEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhc--------------------cCCCCceeeeeCCCCEEEEEEEECCCCEEEEEE
Q ss_pred CCCeEEEEEC---------CCCceeeeecc-CcCcceEEEEec---CCCCCceEEeecCCCcEEEEecc-----cCCeee
Q 011160 81 DDRRVILWDW---------KTERVKLSFHS-GHNDNVFQAKIM---PFTDDRSIVTCAADGQVRHAQIL-----ERGGVE 142 (492)
Q Consensus 81 ~d~~i~iwd~---------~~~~~~~~~~~-~~~~~v~~~~~~---~~~~~~~l~~~~~dg~v~iw~~~-----~~~~~~ 142 (492)
..|.+.-... ..|..+..++. .....|.++... . ++.+++.++..|.++...+. ......
T Consensus 61 ~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~--~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~ 138 (307)
T 1zi0_A 61 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE--EGVKVFMATANGTVKKTVLTEFNRLRTAGKV 138 (307)
T ss_dssp TTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCC--TTCEEEEEETTSEEEEEEGGGGTTCCTTCEE
T ss_pred CCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCC--CCcEEEEEeCCCeEEEEEHHHhhccccCCeE
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEcCCCcEEEEeCC---------CCCccceeecCCCCCCCcceeecceEEEEEcC
Q 011160 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR---------TGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (492)
Q Consensus 143 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (492)
...+..+ +.+-.+...... ..++..+.+|.+..+... .|.....+. ....|.++...+
T Consensus 139 ~i~l~~~-d~lv~~~~~~~~-~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-----------~~d~Vv~~~~~~ 205 (307)
T 1zi0_A 139 AIKLVDG-DELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-----------EGDKVVSLIVPR 205 (307)
T ss_dssp SSCCCTT-CCEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-----------TTCCEEEEECCC
T ss_pred EEEECCC-CEEEEEEEeCCC-CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-----------CCCEEEEEEEec
Q ss_pred CCCceEEEecCCCeEEEEecccccccCCCCCCCCccccCCCCcCCCcccceEEEEEcCCCCeeEeecCCcEEEEecC
Q 011160 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (492)
Q Consensus 214 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~i~~~d~~ 290 (492)
+ ...+++.+..|.++-.++........ .........+......-+......++..+++...++.+..+.+.
T Consensus 206 ~-~~~ll~~T~~G~~Kr~~~~e~~~~~R-----g~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 206 G-DGAILTATQNGYGKRTAVAEYPTKSR-----ATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp S-SCEEEEEETTSEEEEECGGGSCCCCT-----TSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred C-CCEEEEEEcCCceEEEEHHHhccCCC-----CCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
No 382
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.32 E-value=2.5e+02 Score=26.08 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=36.2
Q ss_pred EEEEeeccCeEEEEecC-CC-------eeeEEEec--CCceeEEEeecCCCCeEEEeeCCCCEEE
Q 011160 357 YVVSGSDCGRIFIWKKK-GG-------ELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKI 411 (492)
Q Consensus 357 ~l~sg~~dg~i~iwd~~-~~-------~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~i 411 (492)
.+..|..+|.|.-.-+. .+ ..+.++.. ...+|..|.++++..+|..++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 46678889976544332 21 12334433 3468999999999999999987776654
Done!