Query 011161
Match_columns 492
No_of_seqs 347 out of 1971
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:48:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 4.8E-34 1E-38 303.2 16.5 280 164-463 108-436 (590)
2 cd04016 C2_Tollip C2 domain pr 99.8 7E-20 1.5E-24 157.9 15.2 111 14-125 2-121 (121)
3 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.2E-18 2.6E-23 149.6 15.2 112 15-126 1-115 (116)
4 cd08682 C2_Rab11-FIP_classI C2 99.8 1.1E-18 2.4E-23 152.2 13.9 108 16-123 1-125 (126)
5 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.7E-18 8E-23 148.2 13.8 100 15-114 1-111 (126)
6 cd04042 C2A_MCTP_PRT C2 domain 99.8 7.2E-18 1.6E-22 146.0 15.0 112 15-126 1-120 (121)
7 KOG1030 Predicted Ca2+-depende 99.8 1.7E-18 3.7E-23 153.0 11.0 98 13-110 5-102 (168)
8 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.4E-17 2.9E-22 143.6 15.1 112 14-125 1-118 (119)
9 cd08681 C2_fungal_Inn1p-like C 99.8 7.9E-18 1.7E-22 145.0 12.7 110 14-124 1-117 (118)
10 cd04022 C2A_MCTP_PRT_plant C2 99.8 9.5E-18 2.1E-22 146.5 13.3 111 15-125 1-125 (127)
11 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.6E-17 3.4E-22 143.8 14.2 109 16-124 2-120 (121)
12 cd04024 C2A_Synaptotagmin-like 99.8 1.8E-17 4E-22 144.7 14.1 112 14-125 1-128 (128)
13 cd08375 C2_Intersectin C2 doma 99.7 3.8E-17 8.2E-22 144.3 15.7 116 10-125 11-135 (136)
14 cd04019 C2C_MCTP_PRT_plant C2 99.7 3.6E-17 7.9E-22 146.7 15.0 112 15-126 1-132 (150)
15 cd04036 C2_cPLA2 C2 domain pre 99.7 3.4E-17 7.3E-22 141.4 13.6 111 15-126 1-118 (119)
16 cd08391 C2A_C2C_Synaptotagmin_ 99.7 5.8E-17 1.2E-21 140.0 14.4 111 14-125 1-121 (121)
17 cd08381 C2B_PI3K_class_II C2 d 99.7 3.5E-17 7.5E-22 141.9 12.5 100 13-113 12-122 (122)
18 cd08677 C2A_Synaptotagmin-13 C 99.7 2.7E-17 5.9E-22 139.9 11.5 99 11-112 11-118 (118)
19 cd08678 C2_C21orf25-like C2 do 99.7 6.6E-17 1.4E-21 141.0 14.3 109 16-126 1-120 (126)
20 cd04046 C2_Calpain C2 domain p 99.7 1.6E-16 3.5E-21 138.5 16.1 113 13-126 2-122 (126)
21 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 9E-17 1.9E-21 139.2 14.2 109 16-124 2-120 (121)
22 cd04027 C2B_Munc13 C2 domain s 99.7 9.6E-17 2.1E-21 140.2 14.1 101 15-115 2-113 (127)
23 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.1E-16 2.5E-21 138.8 14.5 99 16-114 2-103 (123)
24 cd08378 C2B_MCTP_PRT_plant C2 99.7 8.8E-17 1.9E-21 139.1 13.3 105 16-125 2-119 (121)
25 cd08395 C2C_Munc13 C2 domain t 99.7 7.5E-17 1.6E-21 138.8 12.4 99 15-114 1-112 (120)
26 cd04028 C2B_RIM1alpha C2 domai 99.7 1E-16 2.2E-21 142.5 13.4 103 13-115 28-139 (146)
27 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.1E-16 2.3E-21 140.9 13.2 111 15-125 1-132 (133)
28 cd04017 C2D_Ferlin C2 domain f 99.7 2.2E-16 4.8E-21 139.4 15.0 114 14-127 1-133 (135)
29 cd04015 C2_plant_PLD C2 domain 99.7 3.7E-16 8E-21 141.5 15.5 112 13-125 6-157 (158)
30 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.4E-16 3.1E-21 138.7 12.3 102 12-113 13-125 (125)
31 cd08394 C2A_Munc13 C2 domain f 99.7 3.1E-16 6.7E-21 134.8 13.5 103 14-121 2-112 (127)
32 cd08400 C2_Ras_p21A1 C2 domain 99.7 7.3E-16 1.6E-20 134.4 16.1 110 14-127 4-124 (126)
33 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.2E-16 4.7E-21 137.5 12.7 103 11-113 12-125 (125)
34 cd04043 C2_Munc13_fungal C2 do 99.7 5.9E-16 1.3E-20 134.9 15.1 112 14-126 1-121 (126)
35 cd04014 C2_PKC_epsilon C2 doma 99.7 7.4E-16 1.6E-20 135.5 15.7 113 13-127 3-130 (132)
36 cd08387 C2A_Synaptotagmin-8 C2 99.7 3.1E-16 6.8E-21 136.3 12.9 103 11-113 13-123 (124)
37 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.5E-16 5.3E-21 137.6 12.2 103 11-113 12-128 (128)
38 cd08385 C2A_Synaptotagmin-1-5- 99.7 4.7E-16 1E-20 135.1 13.3 102 12-113 14-123 (124)
39 cd04031 C2A_RIM1alpha C2 domai 99.7 3.9E-16 8.4E-21 135.7 12.8 103 11-113 13-125 (125)
40 cd04010 C2B_RasA3 C2 domain se 99.7 3.5E-16 7.6E-21 139.7 12.4 99 15-115 1-123 (148)
41 cd04050 C2B_Synaptotagmin-like 99.7 4.5E-16 9.8E-21 131.3 12.1 97 15-114 1-102 (105)
42 cd08688 C2_KIAA0528-like C2 do 99.7 3.5E-16 7.6E-21 133.1 10.9 99 16-114 1-109 (110)
43 cd04041 C2A_fungal C2 domain f 99.7 3.3E-16 7.2E-21 133.4 10.2 99 14-113 1-107 (111)
44 cd08680 C2_Kibra C2 domain fou 99.7 6E-16 1.3E-20 134.2 11.9 102 11-112 11-124 (124)
45 cd04044 C2A_Tricalbin-like C2 99.7 1E-15 2.2E-20 132.8 13.3 114 14-127 2-124 (124)
46 cd08382 C2_Smurf-like C2 domai 99.7 1.3E-15 2.8E-20 132.3 13.6 98 16-114 2-105 (123)
47 cd04039 C2_PSD C2 domain prese 99.7 9.5E-16 2.1E-20 129.9 11.8 89 14-102 1-95 (108)
48 cd08685 C2_RGS-like C2 domain 99.7 7.2E-16 1.6E-20 133.0 11.2 100 12-112 10-119 (119)
49 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.5E-15 3.3E-20 132.1 12.6 104 11-114 13-125 (125)
50 cd04045 C2C_Tricalbin-like C2 99.6 2.9E-15 6.3E-20 129.5 13.8 101 14-114 1-103 (120)
51 cd08521 C2A_SLP C2 domain firs 99.6 1.7E-15 3.7E-20 131.3 12.4 102 11-112 11-123 (123)
52 cd08388 C2A_Synaptotagmin-4-11 99.6 2.6E-15 5.7E-20 131.2 13.4 104 11-114 13-128 (128)
53 cd04030 C2C_KIAA1228 C2 domain 99.6 2.2E-15 4.7E-20 131.4 12.8 103 11-113 13-127 (127)
54 cd04049 C2_putative_Elicitor-r 99.6 3.5E-15 7.5E-20 129.7 13.8 102 14-115 1-109 (124)
55 cd08390 C2A_Synaptotagmin-15-1 99.6 2.9E-15 6.4E-20 129.8 12.8 104 11-114 11-123 (123)
56 cd04011 C2B_Ferlin C2 domain s 99.6 2.7E-15 6E-20 127.8 11.9 99 12-114 2-110 (111)
57 cd04038 C2_ArfGAP C2 domain pr 99.6 3.2E-15 6.9E-20 133.2 12.5 88 14-102 2-89 (145)
58 cd08389 C2A_Synaptotagmin-14_1 99.6 4.1E-15 8.9E-20 129.3 12.8 103 11-114 13-124 (124)
59 cd08373 C2A_Ferlin C2 domain f 99.6 7.7E-15 1.7E-19 128.1 14.5 106 20-127 2-117 (127)
60 cd08676 C2A_Munc13-like C2 dom 99.6 3.4E-15 7.3E-20 133.9 12.2 101 8-112 22-153 (153)
61 cd04051 C2_SRC2_like C2 domain 99.6 2.9E-15 6.3E-20 130.3 11.2 109 15-123 1-123 (125)
62 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1E-15 2.3E-20 134.6 8.4 105 11-115 10-122 (133)
63 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 3.9E-15 8.4E-20 135.4 12.1 105 10-114 23-138 (162)
64 PF02893 GRAM: GRAM domain; I 99.6 1.2E-15 2.6E-20 118.5 7.3 66 164-229 2-69 (69)
65 cd04018 C2C_Ferlin C2 domain t 99.6 5.1E-15 1.1E-19 132.5 12.4 99 16-114 2-125 (151)
66 cd08406 C2B_Synaptotagmin-12 C 99.6 1.7E-15 3.7E-20 133.6 8.3 104 11-114 12-123 (136)
67 KOG0696 Serine/threonine prote 99.6 3.7E-16 8E-21 154.8 4.1 106 13-118 179-293 (683)
68 cd08404 C2B_Synaptotagmin-4 C2 99.6 2.6E-15 5.5E-20 132.8 8.7 107 12-118 13-127 (136)
69 cd04032 C2_Perforin C2 domain 99.6 8E-15 1.7E-19 127.5 11.5 90 12-102 26-117 (127)
70 KOG1032 Uncharacterized conser 99.6 7.6E-16 1.6E-20 164.6 6.1 456 5-470 88-582 (590)
71 cd08675 C2B_RasGAP C2 domain s 99.6 7.3E-15 1.6E-19 129.9 11.3 99 16-115 1-121 (137)
72 cd08402 C2B_Synaptotagmin-1 C2 99.6 2.5E-15 5.3E-20 132.8 7.2 106 9-114 10-123 (136)
73 cd04040 C2D_Tricalbin-like C2 99.6 1.9E-14 4.1E-19 123.3 12.4 101 16-116 1-105 (115)
74 cd08383 C2A_RasGAP C2 domain ( 99.6 3.7E-14 8.1E-19 121.7 13.6 105 16-124 2-116 (117)
75 cd04026 C2_PKC_alpha_gamma C2 99.6 2.1E-14 4.5E-19 126.0 11.9 105 14-118 13-126 (131)
76 cd08407 C2B_Synaptotagmin-13 C 99.6 1.2E-14 2.6E-19 128.2 9.6 103 11-113 12-124 (138)
77 cd04009 C2B_Munc13-like C2 dom 99.6 2.6E-14 5.7E-19 125.8 11.4 92 12-103 14-117 (133)
78 cd08405 C2B_Synaptotagmin-7 C2 99.6 9.7E-15 2.1E-19 129.0 8.4 105 11-115 12-124 (136)
79 cd08403 C2B_Synaptotagmin-3-5- 99.6 8E-15 1.7E-19 129.2 7.6 107 11-117 11-125 (134)
80 cd04037 C2E_Ferlin C2 domain f 99.5 3.2E-14 6.9E-19 123.7 10.6 89 15-103 1-92 (124)
81 cd08410 C2B_Synaptotagmin-17 C 99.5 1.2E-14 2.6E-19 128.3 7.7 107 11-117 11-126 (135)
82 cd04048 C2A_Copine C2 domain f 99.5 3.8E-14 8.3E-19 122.4 10.6 95 20-114 6-114 (120)
83 cd08691 C2_NEDL1-like C2 domai 99.5 1.4E-13 3E-18 121.4 14.2 99 15-115 2-122 (137)
84 cd08690 C2_Freud-1 C2 domain f 99.5 2E-13 4.4E-18 122.3 15.1 111 16-126 4-137 (155)
85 cd00276 C2B_Synaptotagmin C2 d 99.5 1.7E-14 3.6E-19 126.9 7.5 107 12-118 12-126 (134)
86 cd04013 C2_SynGAP_like C2 doma 99.5 1.9E-13 4.2E-18 121.2 14.1 97 13-114 10-113 (146)
87 cd08692 C2B_Tac2-N C2 domain s 99.5 4.9E-14 1.1E-18 122.9 10.0 103 10-112 10-121 (135)
88 cd08408 C2B_Synaptotagmin-14_1 99.5 2.5E-14 5.5E-19 126.6 8.1 105 10-114 11-125 (138)
89 cd04021 C2_E3_ubiquitin_ligase 99.5 2.5E-13 5.4E-18 118.2 13.9 99 14-114 2-108 (125)
90 smart00568 GRAM domain in gluc 99.5 4.3E-14 9.3E-19 106.9 7.2 60 170-229 1-61 (61)
91 cd04052 C2B_Tricalbin-like C2 99.5 2E-13 4.4E-18 116.3 11.8 96 31-127 9-110 (111)
92 cd04035 C2A_Rabphilin_Doc2 C2 99.5 3.8E-13 8.3E-18 116.6 12.9 100 12-112 13-121 (123)
93 cd00275 C2_PLC_like C2 domain 99.5 1E-12 2.2E-17 114.5 14.8 101 14-116 2-112 (128)
94 PLN03008 Phospholipase D delta 99.5 3.4E-13 7.4E-18 146.0 13.8 118 13-131 13-182 (868)
95 KOG1028 Ca2+-dependent phospho 99.5 7.5E-13 1.6E-17 137.7 15.9 156 13-179 166-336 (421)
96 cd04047 C2B_Copine C2 domain s 99.5 3.7E-13 8.1E-18 114.3 10.4 94 18-112 4-108 (110)
97 cd08686 C2_ABR C2 domain in th 99.5 6.5E-13 1.4E-17 112.8 11.3 81 16-102 1-93 (118)
98 cd08409 C2B_Synaptotagmin-15 C 99.5 1.7E-13 3.7E-18 121.2 8.0 103 11-114 12-124 (137)
99 KOG1011 Neurotransmitter relea 99.4 2.5E-13 5.4E-18 139.9 8.3 114 13-126 294-424 (1283)
100 PLN03200 cellulose synthase-in 99.4 5.6E-13 1.2E-17 156.7 11.4 112 12-126 1978-2100(2102)
101 PF00168 C2: C2 domain; Inter 99.3 1.5E-11 3.2E-16 98.4 10.1 81 16-96 1-85 (85)
102 cd00030 C2 C2 domain. The C2 d 99.2 2.6E-10 5.6E-15 93.0 11.1 97 16-112 1-102 (102)
103 KOG2059 Ras GTPase-activating 99.1 1.1E-10 2.4E-15 122.5 9.1 114 14-128 5-127 (800)
104 smart00239 C2 Protein kinase C 99.1 4.8E-10 1E-14 91.9 11.2 89 15-103 1-93 (101)
105 PLN02223 phosphoinositide phos 99.1 2E-09 4.3E-14 112.8 14.3 105 13-118 408-523 (537)
106 cd08374 C2F_Ferlin C2 domain s 99.1 1.1E-09 2.4E-14 95.6 10.3 87 16-102 2-121 (133)
107 KOG1028 Ca2+-dependent phospho 99.0 1.1E-09 2.4E-14 114.2 8.5 91 11-101 295-393 (421)
108 PLN02952 phosphoinositide phos 98.9 1.1E-08 2.3E-13 109.5 13.4 105 13-118 469-585 (599)
109 PLN02230 phosphoinositide phos 98.9 1.7E-08 3.7E-13 107.8 13.3 105 13-118 468-584 (598)
110 COG5038 Ca2+-dependent lipid-b 98.9 6.7E-09 1.5E-13 115.0 10.3 104 11-114 1037-1144(1227)
111 PLN02270 phospholipase D alpha 98.9 2.2E-08 4.8E-13 109.2 14.0 117 13-130 7-152 (808)
112 PLN02222 phosphoinositide phos 98.8 4.8E-08 1E-12 104.2 15.0 105 13-118 451-567 (581)
113 KOG0169 Phosphoinositide-speci 98.8 1.5E-08 3.2E-13 108.4 10.6 105 15-120 617-732 (746)
114 PLN02228 Phosphoinositide phos 98.8 6.9E-08 1.5E-12 102.8 14.2 105 13-118 430-547 (567)
115 KOG1328 Synaptic vesicle prote 98.8 1.4E-09 3.1E-14 114.1 1.4 121 7-127 107-302 (1103)
116 cd08689 C2_fungal_Pkc1p C2 dom 98.8 2.4E-08 5.3E-13 82.2 8.2 82 16-102 1-86 (109)
117 COG5038 Ca2+-dependent lipid-b 98.8 3.5E-08 7.7E-13 109.4 12.0 120 9-128 431-559 (1227)
118 KOG1328 Synaptic vesicle prote 98.7 1.1E-08 2.4E-13 107.6 3.6 91 12-102 945-1047(1103)
119 KOG1031 Predicted Ca2+-depende 98.6 1E-07 2.2E-12 98.1 9.2 114 13-126 2-136 (1169)
120 KOG1264 Phospholipase C [Lipid 98.6 3E-07 6.5E-12 98.0 12.1 114 13-128 1064-1191(1267)
121 KOG2059 Ras GTPase-activating 98.4 1.2E-06 2.7E-11 92.6 8.9 121 6-127 108-277 (800)
122 KOG1326 Membrane-associated pr 98.2 9.7E-07 2.1E-11 96.5 3.8 94 8-101 606-703 (1105)
123 PLN02352 phospholipase D epsil 98.1 2E-05 4.3E-10 86.3 12.6 111 12-130 8-134 (758)
124 KOG4347 GTPase-activating prot 98.1 1.8E-06 3.9E-11 91.0 4.1 103 158-279 6-112 (671)
125 KOG0905 Phosphoinositide 3-kin 98.0 5.8E-06 1.3E-10 91.7 4.9 102 13-114 1523-1635(1639)
126 KOG1013 Synaptic vesicle prote 98.0 7E-06 1.5E-10 80.1 4.2 99 13-111 232-338 (362)
127 cd08683 C2_C2cd3 C2 domain fou 97.5 0.00015 3.3E-09 61.9 5.5 97 16-112 1-143 (143)
128 KOG1326 Membrane-associated pr 97.4 3.6E-05 7.9E-10 84.6 -0.2 104 11-114 203-317 (1105)
129 PF14470 bPH_3: Bacterial PH d 97.2 0.0079 1.7E-07 49.2 12.3 85 171-273 1-87 (96)
130 PLN02964 phosphatidylserine de 97.2 0.00062 1.3E-08 74.2 6.4 83 13-102 53-137 (644)
131 KOG1013 Synaptic vesicle prote 97.1 0.00011 2.3E-09 72.1 -0.5 92 13-104 92-192 (362)
132 KOG1327 Copine [Signal transdu 97.1 0.00083 1.8E-08 70.6 5.7 83 20-103 142-235 (529)
133 PF14844 PH_BEACH: PH domain a 97.0 0.0015 3.2E-08 54.9 5.5 87 177-277 2-105 (106)
134 KOG1011 Neurotransmitter relea 96.9 0.0038 8.3E-08 66.0 9.3 101 13-114 1124-1237(1283)
135 KOG2060 Rab3 effector RIM1 and 96.9 0.00064 1.4E-08 67.8 2.9 103 12-114 267-379 (405)
136 KOG1327 Copine [Signal transdu 96.9 0.0031 6.6E-08 66.4 7.9 153 48-211 43-220 (529)
137 cd08684 C2A_Tac2-N C2 domain f 96.8 0.0016 3.4E-08 51.9 4.1 93 17-111 2-102 (103)
138 KOG3837 Uncharacterized conser 95.3 0.021 4.5E-07 57.9 4.6 113 14-126 367-503 (523)
139 KOG1265 Phospholipase C [Lipid 95.0 0.065 1.4E-06 59.1 7.4 99 11-118 700-809 (1189)
140 PF15627 CEP76-C2: CEP76 C2 do 93.8 0.98 2.1E-05 40.5 11.0 92 11-102 6-115 (156)
141 cd08398 C2_PI3K_class_I_alpha 93.8 1.1 2.3E-05 40.6 11.4 99 15-125 9-121 (158)
142 cd08693 C2_PI3K_class_I_beta_d 93.6 0.54 1.2E-05 43.2 9.5 101 15-125 9-135 (173)
143 PF12416 DUF3668: Cep120 prote 93.6 1.1 2.4E-05 45.5 12.4 110 16-128 2-134 (340)
144 cd08687 C2_PKN-like C2 domain 93.2 1.2 2.7E-05 36.0 9.5 83 35-125 9-92 (98)
145 KOG1452 Predicted Rho GTPase-a 92.6 0.29 6.2E-06 48.1 6.2 114 11-126 48-167 (442)
146 cd08380 C2_PI3K_like C2 domain 92.4 0.97 2.1E-05 40.5 9.2 88 15-103 9-108 (156)
147 cd08397 C2_PI3K_class_III C2 d 92.0 0.82 1.8E-05 41.3 8.1 84 33-124 28-121 (159)
148 cd01201 Neurobeachin Neurobeac 90.8 0.75 1.6E-05 38.4 6.0 89 175-279 1-104 (108)
149 cd08399 C2_PI3K_class_I_gamma 89.6 5.6 0.00012 36.6 11.4 104 15-127 11-139 (178)
150 cd04012 C2A_PI3K_class_II C2 d 88.9 2.2 4.8E-05 39.0 8.3 104 13-124 7-133 (171)
151 PF10358 NT-C2: N-terminal C2 88.2 17 0.00036 31.7 13.4 113 11-127 4-136 (143)
152 PF07289 DUF1448: Protein of u 87.4 15 0.00032 37.2 13.4 102 168-285 148-255 (339)
153 PF11605 Vps36_ESCRT-II: Vacuo 87.3 4 8.7E-05 33.0 7.9 40 192-231 37-76 (89)
154 PF06115 DUF956: Domain of unk 86.8 6.8 0.00015 33.2 9.1 76 188-280 20-97 (118)
155 PF08567 TFIIH_BTF_p62_N: TFII 86.2 4.7 0.0001 31.9 7.5 50 193-244 14-67 (79)
156 PF00792 PI3K_C2: Phosphoinosi 85.9 8.2 0.00018 33.9 9.9 55 49-103 23-86 (142)
157 smart00683 DM16 Repeats in sea 83.9 5.5 0.00012 29.1 6.3 34 193-227 21-54 (55)
158 PF14429 DOCK-C2: C2 domain in 81.7 5.4 0.00012 36.8 7.2 54 48-101 61-120 (184)
159 PF11696 DUF3292: Protein of u 81.6 4.1 8.8E-05 44.5 7.1 82 181-280 521-634 (642)
160 PF15625 CC2D2AN-C2: CC2D2A N- 80.1 19 0.00041 32.8 10.1 80 34-114 36-124 (168)
161 smart00142 PI3K_C2 Phosphoinos 76.9 15 0.00033 30.2 7.7 70 16-85 13-92 (100)
162 cd08695 C2_Dock-B C2 domains f 73.9 24 0.00052 32.8 8.9 55 48-102 55-114 (189)
163 cd08694 C2_Dock-A C2 domains f 70.4 21 0.00047 33.3 7.8 55 47-101 54-115 (196)
164 cd08696 C2_Dock-C C2 domains f 69.5 17 0.00036 33.6 6.8 55 47-101 55-118 (179)
165 cd08679 C2_DOCK180_related C2 69.0 12 0.00027 34.2 6.0 52 50-101 56-115 (178)
166 PF07289 DUF1448: Protein of u 66.9 34 0.00073 34.7 8.8 81 192-285 42-129 (339)
167 cd05018 CoxG Carbon monoxide d 66.4 81 0.0017 26.7 13.1 60 404-469 84-143 (144)
168 KOG0694 Serine/threonine prote 64.3 2.4 5.2E-05 46.3 0.3 94 32-127 25-122 (694)
169 smart00234 START in StAR and p 63.7 1.2E+02 0.0026 27.9 13.9 81 384-468 119-203 (206)
170 cd08697 C2_Dock-D C2 domains f 63.7 26 0.00056 32.5 6.9 55 47-101 57-123 (185)
171 COG4687 Uncharacterized protei 63.6 13 0.00029 31.0 4.4 73 191-280 23-96 (122)
172 cd08876 START_1 Uncharacterize 63.1 1.2E+02 0.0026 27.7 12.2 64 388-455 117-184 (195)
173 KOG4471 Phosphatidylinositol 3 62.2 28 0.00061 37.7 7.5 102 164-280 29-135 (717)
174 cd08871 START_STARD10-like Lip 61.2 1.5E+02 0.0032 28.0 12.6 51 387-440 122-176 (222)
175 cd08907 START_STARD8-like C-te 58.9 1.2E+02 0.0025 28.7 10.3 82 355-442 95-183 (205)
176 cd07823 SRPBCC_5 Ligand-bindin 55.3 1.4E+02 0.003 25.8 12.4 62 400-469 81-144 (146)
177 cd08905 START_STARD1-like Chol 52.5 2E+02 0.0044 26.9 11.9 102 358-464 97-205 (209)
178 cd08909 START_STARD13-like C-t 52.4 1.6E+02 0.0035 27.7 10.3 54 384-440 123-179 (205)
179 PF01852 START: START domain; 50.0 2.1E+02 0.0045 26.2 13.7 86 379-468 113-203 (206)
180 PF03703 bPH_2: Bacterial PH d 49.0 1.1E+02 0.0025 23.0 7.9 49 195-244 6-58 (80)
181 PF12068 DUF3548: Domain of un 47.7 24 0.00053 33.4 4.0 33 212-244 111-143 (213)
182 PF06713 bPH_4: Bacterial PH d 47.1 1.3E+02 0.0028 23.2 7.4 47 217-279 21-72 (74)
183 PF10698 DUF2505: Protein of u 44.2 2.3E+02 0.005 25.2 12.7 89 371-469 71-159 (159)
184 cd08861 OtcD1_ARO-CYC_like N-t 39.2 76 0.0017 27.0 5.7 33 405-440 82-114 (142)
185 cd08868 START_STARD1_3_like Ch 36.4 3.5E+02 0.0077 25.0 13.1 81 378-463 117-203 (208)
186 KOG1329 Phospholipase D1 [Lipi 35.5 51 0.0011 37.5 4.7 80 35-114 138-221 (887)
187 PF11618 DUF3250: Protein of u 34.7 89 0.0019 26.2 5.0 63 38-102 2-73 (107)
188 PF04283 CheF-arch: Chemotaxis 32.4 57 0.0012 31.1 4.0 34 191-228 26-59 (221)
189 cd08910 START_STARD2-like Lipi 31.7 4.3E+02 0.0093 24.6 11.0 71 391-465 130-204 (207)
190 PRK10724 hypothetical protein; 31.5 1.1E+02 0.0024 27.4 5.5 28 406-436 96-123 (158)
191 cd00177 START Lipid-binding ST 30.6 3.8E+02 0.0083 23.7 11.7 52 386-440 113-168 (193)
192 PF08512 Rtt106: Histone chape 30.2 3E+02 0.0064 22.3 8.1 70 182-272 5-77 (95)
193 cd07818 SRPBCC_1 Ligand-bindin 29.5 1.5E+02 0.0033 25.4 6.0 58 407-469 91-148 (150)
194 cd08908 START_STARD12-like C-t 29.3 4.8E+02 0.01 24.5 10.7 53 384-440 123-178 (204)
195 cd07813 COQ10p_like Coenzyme Q 27.5 1.8E+02 0.0039 24.6 6.1 28 408-438 82-109 (138)
196 PTZ00447 apical membrane antig 25.3 7.5E+02 0.016 25.3 11.1 103 15-124 59-167 (508)
197 cd08869 START_RhoGAP C-termina 24.9 5.5E+02 0.012 23.7 10.8 39 400-442 132-175 (197)
198 cd08870 START_STARD2_7-like Li 24.9 5.6E+02 0.012 23.8 12.3 106 356-467 98-208 (209)
199 cd08866 SRPBCC_11 Ligand-bindi 24.8 2.5E+02 0.0054 23.8 6.5 54 408-469 88-142 (144)
200 cd08860 TcmN_ARO-CYC_like N-te 24.2 2.4E+02 0.0052 24.7 6.3 58 397-461 80-138 (146)
201 PF10409 PTEN_C2: C2 domain of 23.6 4.6E+02 0.0099 22.3 10.4 87 16-102 6-97 (134)
202 PF00407 Bet_v_1: Pathogenesis 22.5 5.4E+02 0.012 22.7 14.1 106 342-472 45-151 (151)
203 PF04386 SspB: Stringent starv 21.5 1.9E+02 0.0041 25.9 5.1 37 193-229 67-103 (155)
204 COG2867 Oligoketide cyclase/li 20.6 1.7E+02 0.0036 26.0 4.3 37 396-438 77-113 (146)
205 KOG4269 Rac GTPase-activating 20.4 55 0.0012 37.2 1.6 72 7-84 752-828 (1112)
206 PF03517 Voldacs: Regulator of 20.2 1.4E+02 0.003 26.0 3.9 47 193-241 1-51 (135)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=4.8e-34 Score=303.24 Aligned_cols=280 Identities=22% Similarity=0.342 Sum_probs=200.9
Q ss_pred ceeeee--ecCCcceeEEeeeeeeecccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccC-cEEEE
Q 011161 164 PLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITII 240 (492)
Q Consensus 164 ~f~~~F--~lp~~e~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~-~i~i~ 240 (492)
.|...+ ++|+++.|+.+|.|++.+.+++|||||+++.+|||||++|||+++.+||+.+|+.|+|+++++++| +|+|.
T Consensus 108 ~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~ 187 (590)
T KOG1032|consen 108 NLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEIT 187 (590)
T ss_pred hhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEe
Confidence 344444 389999999999999999999999999999999999999999999999999999999999999999 89988
Q ss_pred EecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHHHHHhh----hh-------hhhhhhhhhhhh--hhh--hcCC
Q 011161 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNY----HT-------MLEAEKKEKAES--ALR--AHSS 305 (492)
Q Consensus 241 ~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~~~~~----~~-------~~~~e~~~~~~s--~~~--~~~~ 305 (492)
| ++.+|+|++|++||.+|.+|..+-+.. .- ....+++..+.. ... ..++
T Consensus 188 t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s 251 (590)
T KOG1032|consen 188 T----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPS 251 (590)
T ss_pred c----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCcc
Confidence 5 456999999999999999774443321 11 000111111000 000 0000
Q ss_pred CCCC---Ccccccccccc-cCCCC--C--CCccee------ceeee---------------eeeeecCCccCCCCCCeeE
Q 011161 306 SIGG---SRRQAKIVEET-VTKPE--K--RQPFIK------EEVLV---------------GIYNMGQWHAADEYDGQVR 356 (492)
Q Consensus 306 ~~~~---~~~~~~~~e~~-~~~~~--~--~~~~~~------~~~~~---------------~~~~~~~W~~~~~~~~~~R 356 (492)
.... .+.+.....+. ..... . .+.+++ .+.+| ..+...+|..... +...|
T Consensus 252 ~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~-~~~~r 330 (590)
T KOG1032|consen 252 ALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRS-GILLR 330 (590)
T ss_pred ccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCc-cceeE
Confidence 0000 00000000000 00000 0 000110 01111 1234778885444 78999
Q ss_pred EEEEEEecCCCCCCCceeEeEEEEEEecCCCCeEEEEEEEecCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEE
Q 011161 357 EVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHF 436 (492)
Q Consensus 357 ~~~y~~~~~~~~gp~~t~~~~~q~~~~~~~~~~~vi~~~~~~~dVPygd~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~ 436 (492)
+++|++++..++|||+|.|..+|.+.......++.|...+.+++|||+++|.|.+||+|+|+.++.|+|.|+ ++|.|
T Consensus 331 ~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~---~~V~~ 407 (590)
T KOG1032|consen 331 TLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS---TSVEW 407 (590)
T ss_pred eccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce---eEEEe
Confidence 999999999999999999999999998877666888899999999999999999999999999999999999 99999
Q ss_pred eccceeehheehhHH--HhHHHHHHHHHH
Q 011161 437 KKWCVIQFKIKTGAV--NKYKKEVELMLE 463 (492)
Q Consensus 437 ~K~t~~K~~Iek~~~--~~~~~~~~~~~~ 463 (492)
.|++|.+.+++.++. +.+-+.++.++.
T Consensus 408 ~~~sw~~~~~~~~~~~~k~lv~~~~~~~~ 436 (590)
T KOG1032|consen 408 TKSSWDVPVSEIGSNTLKDLVEILEKLLE 436 (590)
T ss_pred ccCchhhccccccccchhhHHHHHHHHHh
Confidence 999999998888875 334444444444
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=7e-20 Score=157.92 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=98.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I 92 (492)
|+|.|+|++|++|+..+ .|++||||++.+++++.+|+++.+ +.||.|||+|.|.+.+....|.|+|||+|.+++|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 78999999999998877 799999999999999999999876 7999999999999976567899999999999999999
Q ss_pred EEEEEEcc-cC--CCcccEEEEccC-----CCceEEEEEEe
Q 011161 93 GSVIVTVE-SE--GQTGAVWYTLDS-----PSGQVCLHIKT 125 (492)
Q Consensus 93 G~~~i~l~-~l--~~~~~~w~~L~~-----~~G~i~l~l~~ 125 (492)
|.+.+++. .+ +...+.|++|.+ +.|+|++++.+
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999996 44 455789999976 34888888764
No 3
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=1.2e-18 Score=149.58 Aligned_cols=112 Identities=24% Similarity=0.358 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeE
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG 93 (492)
+|+|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.++ ...|.|+|||++..+++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999889999999999999889999999999999999999998665 578999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCCceEEEEEEee
Q 011161 94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI 126 (492)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~l~~~ 126 (492)
++.+++.++ +...+.|++|.+..|++++.+.+.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence 999999987 456788999998779998887653
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.79 E-value=1.1e-18 Score=152.22 Aligned_cols=108 Identities=25% Similarity=0.496 Sum_probs=94.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC------CCcEEEEEEEEcCCCCCC
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS 89 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~------~~~~L~i~v~d~d~~~~d 89 (492)
|+|+|++|+||+.++..|.+||||++.+++.+.+|+++++++||.|||+|.|.+.. ....|.|+|||++.++++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999999999999999999999999999999999999999999865 356799999999999899
Q ss_pred ceeEEEEEEcccCC----CcccEEEEccCC-------CceEEEEE
Q 011161 90 TVLGSVIVTVESEG----QTGAVWYTLDSP-------SGQVCLHI 123 (492)
Q Consensus 90 d~IG~~~i~l~~l~----~~~~~w~~L~~~-------~G~i~l~l 123 (492)
++||++.+++.++. .....||+|.++ .|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999873 345789999752 26666554
No 5
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=3.7e-18 Score=148.18 Aligned_cols=100 Identities=21% Similarity=0.368 Sum_probs=91.0
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC----
Q 011161 15 LIKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW---- 87 (492)
Q Consensus 15 ~L~V~Vi~a~~---L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~---- 87 (492)
.|.|+|++|+| |+.+|..|.+||||++.+++++.+|+++.+++||.|||+|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 37899999999 88899999999999999999999999999999999999999999777778999999999874
Q ss_pred --CCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 88 --~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
++++||++.+++..+ +.....||+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 899999999999998 445578999975
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=7.2e-18 Score=145.98 Aligned_cols=112 Identities=22% Similarity=0.460 Sum_probs=98.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG 93 (492)
.|.|+|++|++|+..+..+.+||||++.+++ ...+|+++.++.||.|||+|.|.+.++...|.|+|||++..+++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 3789999999999999999999999999976 567999999999999999999998776778999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC-----CceEEEEEEee
Q 011161 94 SVIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI 126 (492)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~ 126 (492)
++.+++.++ +...+.|++|.++ .|+|++.+++.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999998 4566789999642 37777777654
No 7
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.77 E-value=1.7e-18 Score=152.98 Aligned_cols=98 Identities=26% Similarity=0.447 Sum_probs=92.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I 92 (492)
-|.|+|.|++|.||..+|..+++||||++.+++++.+|+++++++||+|||.|+|.+.++...|+++|||+|.++.||||
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~m 84 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFM 84 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccccc
Confidence 48999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcccCCCcccEEE
Q 011161 93 GSVIVTVESEGQTGAVWY 110 (492)
Q Consensus 93 G~~~i~l~~l~~~~~~w~ 110 (492)
|.++|++..+......|+
T Consensus 85 G~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 85 GEATIPLKPLLEAQKMDY 102 (168)
T ss_pred ceeeeccHHHHHHhhhhc
Confidence 999999999855555565
No 8
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=1.4e-17 Score=143.64 Aligned_cols=112 Identities=23% Similarity=0.461 Sum_probs=99.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG 93 (492)
|.|.|+|++|++|+..+..+.+||||++.+++...+|++++++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 57899999999999999999999999999998888999999999999999999998776788999999999888999999
Q ss_pred EEEEEcccCCCcccEEEEccCC------CceEEEEEEe
Q 011161 94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKT 125 (492)
Q Consensus 94 ~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~ 125 (492)
++.+++.++......|+.|..+ .|+|.+++++
T Consensus 81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999996667899999652 4667666654
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=7.9e-18 Score=144.96 Aligned_cols=110 Identities=24% Similarity=0.398 Sum_probs=94.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCce
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd~ 91 (492)
|.|.|+|++|++|+..+..+.+||||++.+++...+|+++. +++||.|||.|.|.+.. ....|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 57999999999999999999999999999998888999875 47999999999999965 3467999999999876 899
Q ss_pred eEEEEEEcccC--CCcccEEEEccCC---CceEEEEEE
Q 011161 92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK 124 (492)
Q Consensus 92 IG~~~i~l~~l--~~~~~~w~~L~~~---~G~i~l~l~ 124 (492)
||++.+++.++ +.....|++|..+ .|+|.+++.
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~ 117 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence 99999999987 4456899999762 366666654
No 10
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=9.5e-18 Score=146.51 Aligned_cols=111 Identities=21% Similarity=0.359 Sum_probs=96.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC----CcEEEEEEEEcCCCC-CC
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS 89 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~----~~~L~i~v~d~d~~~-~d 89 (492)
.|.|+|++|++|++.+..+.+||||++.+++++++|+++.++.||.|||.|.|.+..+ ...|.|+|||++..+ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3789999999999999889999999999999999999999999999999999998643 246999999999887 79
Q ss_pred ceeEEEEEEcccCC---CcccEEEEccCC------CceEEEEEEe
Q 011161 90 TVLGSVIVTVESEG---QTGAVWYTLDSP------SGQVCLHIKT 125 (492)
Q Consensus 90 d~IG~~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~l~~ 125 (492)
+|||++.+++.++. .....||+|..+ .|++.+++.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 99999999999873 446789999863 4777766654
No 11
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=1.6e-17 Score=143.82 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=94.6
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161 16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG 93 (492)
|.|+|++|+||+.++ ..|.+||||.+.+++. ..+|+++++++||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 679999999999874 4678999999999765 46899999999999999999999765678999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC------CceEEEEEE
Q 011161 94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK 124 (492)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~------~G~i~l~l~ 124 (492)
.+.++++++ +...+.||+|.+. .|+|+++++
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999998 4455789999863 488877764
No 12
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.8e-17 Score=144.65 Aligned_cols=112 Identities=24% Similarity=0.427 Sum_probs=98.2
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCc
Q 011161 14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST 90 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd 90 (492)
|+|.|+|++|++|+..+. .+.+||||++.++....+|++++++.||.|+|+|.|.+.+ ....|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999998 8899999999999888999999999999999999999976 4678999999999988999
Q ss_pred eeEEEEEEcccCC-----CcccEEEEccCC--------CceEEEEEEe
Q 011161 91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT 125 (492)
Q Consensus 91 ~IG~~~i~l~~l~-----~~~~~w~~L~~~--------~G~i~l~l~~ 125 (492)
+||++.+++.++. .....||+|.++ .|+|++++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999873 335789999864 4777776643
No 13
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=3.8e-17 Score=144.30 Aligned_cols=116 Identities=22% Similarity=0.405 Sum_probs=100.0
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCC
Q 011161 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWK 88 (492)
Q Consensus 10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~ 88 (492)
....|.|.|+|++|++|++.+..|.+||||++.+++...+|++++++.||.|||+|.|.+.++ ...|.|+|||++..++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 445689999999999999999999999999999999999999999999999999999998654 3579999999999999
Q ss_pred CceeEEEEEEcccCC-------CcccEEEEccC-CCceEEEEEEe
Q 011161 89 STVLGSVIVTVESEG-------QTGAVWYTLDS-PSGQVCLHIKT 125 (492)
Q Consensus 89 dd~IG~~~i~l~~l~-------~~~~~w~~L~~-~~G~i~l~l~~ 125 (492)
+++||++.+++.++. .....|..|.. ..|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 999999999999872 22345677754 45999988765
No 14
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=3.6e-17 Score=146.71 Aligned_cols=112 Identities=17% Similarity=0.339 Sum_probs=96.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCcee
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL 92 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~I 92 (492)
.|.|+|++|++|++++..|.+||||++.++++..+|++..+ +.||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37899999999999999999999999999998899999876 69999999999998654 35799999999988889999
Q ss_pred EEEEEEcccCC------CcccEEEEccCCC------------ceEEEEEEee
Q 011161 93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI 126 (492)
Q Consensus 93 G~~~i~l~~l~------~~~~~w~~L~~~~------------G~i~l~l~~~ 126 (492)
|++.++|.++. ...++||+|.... |+|++++.+.
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 99999999883 2358999997632 6777777665
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.74 E-value=3.4e-17 Score=141.35 Aligned_cols=111 Identities=23% Similarity=0.377 Sum_probs=95.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCc
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd 90 (492)
.|.|+|++|++|+..+..+.+||||++.+. ....+|+++.++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 378999999999999988999999999985 3457999999999999999999998643 45699999999988 899
Q ss_pred eeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEee
Q 011161 91 VLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKTI 126 (492)
Q Consensus 91 ~IG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~l~l~~~ 126 (492)
+||++.+++.++ +.....|++|.+ +.|++++++.++
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence 999999999998 456788999987 368888877654
No 16
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=5.8e-17 Score=140.01 Aligned_cols=111 Identities=24% Similarity=0.465 Sum_probs=97.2
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCC
Q 011161 14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII 86 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~------~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~ 86 (492)
|+|.|+|++|++|+..+. .+.+||||++.+++...+|++++++.||.|+|+|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998875 3689999999999988999999999999999999999864 456899999999987
Q ss_pred CCCceeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEe
Q 011161 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT 125 (492)
Q Consensus 87 ~~dd~IG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~l~l~~ 125 (492)
++++||++.+++.++ ....+.||+|.+ ..|++++++++
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999988 344679999986 57999888764
No 17
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=3.5e-17 Score=141.89 Aligned_cols=100 Identities=22% Similarity=0.347 Sum_probs=87.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEe-e--C-CCcEEEEEEEEc
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-D--E-LPVQIIVTIYDW 83 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i-~--~-~~~~L~i~v~d~ 83 (492)
.+.|.|.|++|++|++++ .+.+||||++++. ..+++|++++++.||.|||+|.|.+ . + ....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 8999999999985 3467899999999999999999987 2 2 245799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~ 113 (492)
+..+++++||++.++|.++ ......||+|.
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 9999999999999999998 44467899983
No 18
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.73 E-value=2.7e-17 Score=139.91 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=84.6
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEc
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW 83 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~ 83 (492)
...+.|+|+|++|++|+ ..|.+||||++++.. .+++|++.++|+||+|||+|.|.+.. ....|.|+|||+
T Consensus 11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 45689999999999998 246699999999853 45689999999999999999999853 345699999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 011161 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L 112 (492)
|+++++++||++.+++.++ ......|.+|
T Consensus 88 Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 88 DRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999976 6667788765
No 19
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=6.6e-17 Score=140.98 Aligned_cols=109 Identities=23% Similarity=0.420 Sum_probs=93.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG 93 (492)
|.|+|++|+||+. ..|.+||||++.++. .+.+|+++.++.||.|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999987 678999999999973 557999999999999999999999655678999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC-------CceEEEEEEee
Q 011161 94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI 126 (492)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~ 126 (492)
++.+++.++ ......|++|.++ .|++.+++.+.
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 999999997 4556789999754 36666666664
No 20
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.6e-16 Score=138.53 Aligned_cols=113 Identities=16% Similarity=0.310 Sum_probs=98.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I 92 (492)
.++|+|+|++|++|...+..|.+||||++.++++..+|++++++.||.|||.|.|.+.+....|.|+|||++.. ++++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 47899999999999999999999999999999999999999999999999999998877778899999999876 48999
Q ss_pred EEEEEEcccCCCcccEEEEccC--------CCceEEEEEEee
Q 011161 93 GSVIVTVESEGQTGAVWYTLDS--------PSGQVCLHIKTI 126 (492)
Q Consensus 93 G~~~i~l~~l~~~~~~w~~L~~--------~~G~i~l~l~~~ 126 (492)
|.+.+++.++......|++|.. ..|.|.+.+.+.
T Consensus 81 G~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999988666778999953 236666665443
No 21
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=9e-17 Score=139.15 Aligned_cols=109 Identities=25% Similarity=0.437 Sum_probs=94.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEE
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS 94 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~ 94 (492)
|.|+|++|++|++++..|.+||||++.+++.. .+|+++.+++||.|||.|.|.+......|.|.|||++..+++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999999999999999999997654 59999999999999999999987666789999999999999999999
Q ss_pred EEEEcccCC---CcccEEEEccCC------CceEEEEEE
Q 011161 95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK 124 (492)
Q Consensus 95 ~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~l~ 124 (492)
+.+++..+. ...+.|++|.+. .|++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999998773 236789999752 477766654
No 22
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.72 E-value=9.6e-17 Score=140.17 Aligned_cols=101 Identities=30% Similarity=0.559 Sum_probs=91.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCC--------
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-------- 86 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~-------- 86 (492)
.|+|+|++|++|+..|..|.+||||++.+++...+|+++.++.||.|+|+|.|.+..+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999999999999999999998888899999999999999999999876667899999999853
Q ss_pred ---CCCceeEEEEEEcccCCCcccEEEEccCC
Q 011161 87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSP 115 (492)
Q Consensus 87 ---~~dd~IG~~~i~l~~l~~~~~~w~~L~~~ 115 (492)
+.+++||++.+++.++....+.|+.|.++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~ 113 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKR 113 (127)
T ss_pred ccccCCCcceEEEEEhHHccCCCCeEEECccC
Confidence 46899999999999997777899999874
No 23
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=1.1e-16 Score=138.83 Aligned_cols=99 Identities=29% Similarity=0.592 Sum_probs=90.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeEE
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS 94 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG~ 94 (492)
|+|+|++|++|+.++..+.+||||.+++++...+|++++++.||.|+|+|.|.+... ...|.|+|||++..+++++||+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 789999999999999888999999999998889999999999999999999998654 4679999999999999999999
Q ss_pred EEEEcccC--CCcccEEEEccC
Q 011161 95 VIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 95 ~~i~l~~l--~~~~~~w~~L~~ 114 (492)
+.+++.++ ......|+.|.+
T Consensus 82 ~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 82 VVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEHHHcccCCCCCCEEECCC
Confidence 99999988 344678999986
No 24
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=8.8e-17 Score=139.15 Aligned_cols=105 Identities=24% Similarity=0.447 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeEE
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS 94 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG~ 94 (492)
|.|+|++|++|+.+ .+||||++.+++...+|++++++.||.|||+|.|.+..+ ...|.|+|||++.. ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 789999999998888999999999999999999998763 56799999999977 7899999
Q ss_pred EEEEcccCCC-------cccEEEEccCCC-----ceEEEEEEe
Q 011161 95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIKT 125 (492)
Q Consensus 95 ~~i~l~~l~~-------~~~~w~~L~~~~-----G~i~l~l~~ 125 (492)
+.++++++.. ....||+|.+.. |+|+++|.+
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999998822 246899998743 777777754
No 25
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=7.5e-17 Score=138.77 Aligned_cols=99 Identities=15% Similarity=0.304 Sum_probs=84.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----C--eeeeeeccCCCCCCeeccEEEEEeeCC----CcEEEEEEEEc
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW 83 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~--~~~~T~~~~~t~nP~W~e~f~f~i~~~----~~~L~i~v~d~ 83 (492)
.|+|+|++|++|+..+ .|.+||||+|++. . ++.+|+++.+++||+|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 5999999999973 2 245899999999999999999998632 23599999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
+..+++++||++.+++.++ ++....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9888899999999999998 455678999976
No 26
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=1e-16 Score=142.46 Aligned_cols=103 Identities=16% Similarity=0.287 Sum_probs=89.4
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEE-EcCC
Q 011161 13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI 85 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~-d~d~ 85 (492)
.+.|.|+|++|+||++.+ ..|.+||||++++. + .+++|+++++++||+|||+|.|.+......|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 478999999999998874 57889999999983 2 256899999999999999999999855677999999 6888
Q ss_pred CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161 86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (492)
Q Consensus 86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~ 115 (492)
..++++||++.|+|+++ +.....||+|.++
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 88899999999999998 4556789999874
No 27
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.1e-16 Score=140.92 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=94.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~ 87 (492)
.|+|+|++|++|+.++..+.+||||++.+.+. ..+|+++.++.||.|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 48899999999999998999999999998654 45899999999999999999998765678999999999999
Q ss_pred CCceeEEEEEEcccCCC--------cccEEEEccCC------CceEEEEEEe
Q 011161 88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDSP------SGQVCLHIKT 125 (492)
Q Consensus 88 ~dd~IG~~~i~l~~l~~--------~~~~w~~L~~~------~G~i~l~l~~ 125 (492)
++++||++.+++.++.. ....||+|.++ .|+|++++.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 99999999999998821 13589999852 3666666654
No 28
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=2.2e-16 Score=139.37 Aligned_cols=114 Identities=19% Similarity=0.416 Sum_probs=96.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC----------CCcEEEEEEEEc
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW 83 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~----------~~~~L~i~v~d~ 83 (492)
+.|+|+|++|++|+++|..|.+||||++.+++...+|++++++.||.|||+|.|.+.. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5789999999999999999999999999999989999999999999999999997532 124689999999
Q ss_pred CCCCCCceeEEEEE-EcccC-----CCcccEEEEccC---CCceEEEEEEeee
Q 011161 84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK 127 (492)
Q Consensus 84 d~~~~dd~IG~~~i-~l~~l-----~~~~~~w~~L~~---~~G~i~l~l~~~~ 127 (492)
+..+++++||++.+ ++..+ .....+|++|.. ..|+|.+.+++.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence 99999999999986 44333 245679999975 3488888888764
No 29
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.70 E-value=3.7e-16 Score=141.53 Aligned_cols=112 Identities=20% Similarity=0.383 Sum_probs=95.0
Q ss_pred ceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeeccCCCCCCee
Q 011161 13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW 61 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d------------------------------~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W 61 (492)
.|+|.|+|++|++|+.+| ..|.+||||.+.+++.+ .+|+++.++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 588999999999999987 24668999999998755 59999999999999
Q ss_pred ccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEe
Q 011161 62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT 125 (492)
Q Consensus 62 ~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~ 125 (492)
||+|.|.+..+...|.|.|||+|..+ +++||.+.+++.++ +...+.|++|... .|+|++++++
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998776778999999999875 57999999999998 5556799999641 3667777665
No 30
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.70 E-value=1.4e-16 Score=138.71 Aligned_cols=102 Identities=22% Similarity=0.375 Sum_probs=88.0
Q ss_pred CceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEE
Q 011161 12 SAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d 82 (492)
..+.|.|+|++|+||++++.. |.+||||++++. ..+++|+++++++||.|||+|.|.+.. ....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 357899999999999999975 899999999983 234689999999999999999999853 23579999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~ 113 (492)
++..+++++||++.++|.++ ......||+|+
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999999999999998 44557899984
No 31
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=3.1e-16 Score=134.79 Aligned_cols=103 Identities=22% Similarity=0.424 Sum_probs=87.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG 93 (492)
+.|.|+|++|++|..++ ..||||+|.+++.+.+|++.++ .||.|||.|.|.+.+....|.|+|||++.. .|+|||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 57999999999997655 4589999999999889999987 499999999999988777899999999865 899999
Q ss_pred EEEEEcccC--C--CcccEEEEccC----CCceEEE
Q 011161 94 SVIVTVESE--G--QTGAVWYTLDS----PSGQVCL 121 (492)
Q Consensus 94 ~~~i~l~~l--~--~~~~~w~~L~~----~~G~i~l 121 (492)
++.++|.++ + ....+||+|.+ +.|++..
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~ 112 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVG 112 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeEec
Confidence 999999998 2 33478999987 4465543
No 32
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.69 E-value=7.3e-16 Score=134.42 Aligned_cols=110 Identities=22% Similarity=0.340 Sum_probs=91.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCC-cEEEEEEEEcCCCCCCce
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKSTV 91 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~-~~L~i~v~d~d~~~~dd~ 91 (492)
..|+|+|++|++|+.. +.+||||.+.+++.. .+|++. ++.||.|||+|.|.+..+. ..+.|.|||++..+++++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 4699999999999875 478999999998754 578874 5899999999999864433 468999999999999999
Q ss_pred eEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeee
Q 011161 92 LGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK 127 (492)
Q Consensus 92 IG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~ 127 (492)
||++.+++..+ +...+.|++|.+. .|+|++++.+..
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999988 4456789999763 388999988764
No 33
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.69 E-value=2.2e-16 Score=137.49 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=88.1
Q ss_pred CCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~ 81 (492)
...+.|.|.|++|+||++.+. .+.+||||++++. ..+++|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 456789999999999998875 5789999999973 235689999999999999999999853 2456999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~ 113 (492)
|++..+++++||++.+++..+ ......|++|.
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999999999999999998 45568899984
No 34
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=5.9e-16 Score=134.86 Aligned_cols=112 Identities=25% Similarity=0.476 Sum_probs=96.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCC
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS 89 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~d 89 (492)
+.|+|+|++|++|+..+..+.+||||++.+.+. ..+|+++.++.||.|||+|.|.+... ...|.|+|||++..+++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 468999999999999999999999999987643 46899999999999999999998763 56799999999998899
Q ss_pred ceeEEEEEEcccC-----CCcccEEEEccCCCceEEEEEEee
Q 011161 90 TVLGSVIVTVESE-----GQTGAVWYTLDSPSGQVCLHIKTI 126 (492)
Q Consensus 90 d~IG~~~i~l~~l-----~~~~~~w~~L~~~~G~i~l~l~~~ 126 (492)
++||++.+++.++ +...+.|++|.+ .|++++.+.+.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~ 121 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSME 121 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEe
Confidence 9999999999864 224568999986 79998887765
No 35
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=7.4e-16 Score=135.46 Aligned_cols=113 Identities=19% Similarity=0.336 Sum_probs=98.4
Q ss_pred ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEE
Q 011161 13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~----------g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~ 81 (492)
.|.|+|+|++|++|+..+.. +.+||||++.+++.. .+|+++.++.||.|||+|.|.+.+ ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 47899999999999988863 679999999998765 589999999999999999999964 578999999
Q ss_pred EcCCCCCCceeEEEEEEcccCC----CcccEEEEccCCCceEEEEEEeee
Q 011161 82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK 127 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l~----~~~~~w~~L~~~~G~i~l~l~~~~ 127 (492)
|++..+++++||++.++|.++. ...+.|++|.+ .|++++++.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence 9998888999999999999873 34689999985 799999988763
No 36
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.69 E-value=3.1e-16 Score=136.27 Aligned_cols=103 Identities=22% Similarity=0.418 Sum_probs=90.5
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEcC
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD 84 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~d 84 (492)
+..+.|.|+|++|++|+.++..+.+||||++.+. ....+|++++++.||.|+|+|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 3457999999999999999999999999999983 3457899999999999999999998542 457999999999
Q ss_pred CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (492)
Q Consensus 85 ~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~ 113 (492)
..+++++||++.++++++ +...+.||+|+
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999998 55678899986
No 37
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.69 E-value=2.5e-16 Score=137.60 Aligned_cols=103 Identities=18% Similarity=0.376 Sum_probs=88.1
Q ss_pred CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~ 81 (492)
...+.|.|+|++|+||++++.. |.+||||++++. ..++||++++++.||+|||+|.|.+... ...|.+.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 3457999999999999999875 999999999974 2356899999999999999999998542 457999999
Q ss_pred EcCCCCCCceeEEEEEEcccCC-----CcccEEEEcc
Q 011161 82 DWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD 113 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l~-----~~~~~w~~L~ 113 (492)
|++..+++++||++.|+|.++. .....||+|.
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9999999999999999999882 2456899983
No 38
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.68 E-value=4.7e-16 Score=135.12 Aligned_cols=102 Identities=24% Similarity=0.426 Sum_probs=89.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCC
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI 85 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~ 85 (492)
..+.|.|+|++|+||+.++..+.+||||++++. ....+|++++++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 457899999999999999989999999999974 235689999999999999999999853 24579999999999
Q ss_pred CCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161 86 IWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (492)
Q Consensus 86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~ 113 (492)
.+++++||++.+++.++ +...+.|++|.
T Consensus 94 ~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 94 FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999999999998 56678999985
No 39
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=3.9e-16 Score=135.73 Aligned_cols=103 Identities=21% Similarity=0.376 Sum_probs=88.8
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY 81 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~ 81 (492)
...+.|.|+|++|++|+..+..+.+||||++++.. .+.+|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 44578999999999999999889999999999853 45689999999999999999998533 2467999999
Q ss_pred EcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 011161 82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l-~~~~~~w~~L~ 113 (492)
|++..+++++||++.++|.+. ......||+|+
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence 999998999999999999984 44457899984
No 40
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.68 E-value=3.5e-16 Score=139.73 Aligned_cols=99 Identities=21% Similarity=0.390 Sum_probs=85.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEee---------------CC-C
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------EL-P 73 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~---------------~~-~ 73 (492)
.|.|+|++|++|+. ..|.+||||++++.. .+++|+++++++||.|||+|.|.+. +. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999988 578999999999865 5678999999999999999999984 11 2
Q ss_pred cEEEEEEEEcCCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 011161 74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP 115 (492)
Q Consensus 74 ~~L~i~v~d~d~~~~dd~IG~~~i~l~~l~---~~~~~w~~L~~~ 115 (492)
..|.|.|||++..++++|||++.|++..+. .....||+|.++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 459999999999889999999999999984 346899999874
No 41
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.68 E-value=4.5e-16 Score=131.25 Aligned_cols=97 Identities=26% Similarity=0.320 Sum_probs=87.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeE
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG 93 (492)
.|.|+|++|++|+..+..+.+||||++.++++..+|+++.++.||.|||.|.|.+.++ ...|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 3789999999999998889999999999999999999999999999999999999764 5679999999886 78999
Q ss_pred EEEEEcccCC----CcccEEEEccC
Q 011161 94 SVIVTVESEG----QTGAVWYTLDS 114 (492)
Q Consensus 94 ~~~i~l~~l~----~~~~~w~~L~~ 114 (492)
++.++|.++. ...+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999872 24679999976
No 42
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=3.5e-16 Score=133.08 Aligned_cols=99 Identities=21% Similarity=0.387 Sum_probs=87.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeccCCCCCCee-ccEEEEEeeCC---CcEEEEEEEEcCCCCCCc
Q 011161 16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST 90 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W-~e~f~f~i~~~---~~~L~i~v~d~d~~~~dd 90 (492)
|.|+|++|++|+.++. .+.+||||++++++...+|+++++++||.| ||+|.|.+... ...|.|+|||++..++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999999884 788999999999998899999999999999 99999998642 367999999999999999
Q ss_pred eeEEEEEEcccCCC-----cccEEEEccC
Q 011161 91 VLGSVIVTVESEGQ-----TGAVWYTLDS 114 (492)
Q Consensus 91 ~IG~~~i~l~~l~~-----~~~~w~~L~~ 114 (492)
+||++.+++.++.. ....||+|..
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999832 3678999853
No 43
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=3.3e-16 Score=133.44 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=86.3
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEEcCC
Q 011161 14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI 85 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d~d~ 85 (492)
|+|.|+|++|++|+..+.. +.+||||++++. ....+|+++++++||.|||+|.|.+.. ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 899999999984 345699999999999999999998753 24579999999999
Q ss_pred CCCCceeEEEEEEcccCCCcccEEEEcc
Q 011161 86 IWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (492)
Q Consensus 86 ~~~dd~IG~~~i~l~~l~~~~~~w~~L~ 113 (492)
.+++++||++.+++.++.. ...|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~-~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE-DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc-CCCCCccc
Confidence 9999999999999999953 36788874
No 44
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=6e-16 Score=134.15 Aligned_cols=102 Identities=14% Similarity=0.213 Sum_probs=88.0
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~------~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~ 81 (492)
...+.|.|+|++|+||++.+..+.+||||++++- ..+.+|++++++.||+|||+|.|.+.. ....|.|+||
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 4457899999999999999888899999999973 236789999999999999999999853 3467999999
Q ss_pred EcCCCCCCceeEEEEEEcccC---CCcccEEEEc
Q 011161 82 DWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL 112 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l---~~~~~~w~~L 112 (492)
|++..+++++||++.++|.++ ......||+|
T Consensus 91 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999999999988 2346779876
No 45
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=1e-15 Score=132.78 Aligned_cols=114 Identities=20% Similarity=0.369 Sum_probs=94.7
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCc
Q 011161 14 YLIKLELLAAKNLIGANL-NGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST 90 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd 90 (492)
|.|.|+|++|++|+..+. .+.+||||.+.+++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..++++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 789999999999997663 56799999999987 678999999999999999999998866778999999999988999
Q ss_pred eeEEEEEEcccCC--Ccc-cEEEEccC---CCceEEEEEEeee
Q 011161 91 VLGSVIVTVESEG--QTG-AVWYTLDS---PSGQVCLHIKTIK 127 (492)
Q Consensus 91 ~IG~~~i~l~~l~--~~~-~~w~~L~~---~~G~i~l~l~~~~ 127 (492)
+||.+.+++.++. ... ..|..|.. ..|+|++.+++.+
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 9999999999982 222 23454543 3588888887753
No 46
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.66 E-value=1.3e-15 Score=132.29 Aligned_cols=98 Identities=24% Similarity=0.416 Sum_probs=86.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCC--Ccee
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL 92 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~--dd~I 92 (492)
|+|+|++|++|+.++..+.+||||+++++ ....+|+++.+++||.|||+|.|.+.. ...|.|+|||++..++ +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999999999999999999996 667799999999999999999999965 6789999999998875 5799
Q ss_pred EEEEEEcccCC---CcccEEEEccC
Q 011161 93 GSVIVTVESEG---QTGAVWYTLDS 114 (492)
Q Consensus 93 G~~~i~l~~l~---~~~~~w~~L~~ 114 (492)
|++.+++.++. .....|++|..
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~ 105 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRK 105 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeec
Confidence 99999999982 23467999955
No 47
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=9.5e-16 Score=129.87 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=79.9
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEEEEEcCCCC
Q 011161 14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW 87 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~----g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~v~d~d~~~ 87 (492)
|+|.|+|++|++|++.+.. +.+||||++++++...+|+++++++||+|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999988742 358999999999888899999999999999999999854 2346999999999999
Q ss_pred CCceeEEEEEEcccC
Q 011161 88 KSTVLGSVIVTVESE 102 (492)
Q Consensus 88 ~dd~IG~~~i~l~~l 102 (492)
++++||++.++|.++
T Consensus 81 ~dd~IG~~~l~L~~l 95 (108)
T cd04039 81 FNDYVATGSLSVQEL 95 (108)
T ss_pred CCcceEEEEEEHHHH
Confidence 999999999999998
No 48
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.66 E-value=7.2e-16 Score=132.98 Aligned_cols=100 Identities=30% Similarity=0.459 Sum_probs=85.1
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEEEEEcC
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD 84 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~v~d~d 84 (492)
..+.|.|+|++|+||++++ .+.+||||++++.. .+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4578999999999999998 88999999999842 35689999999999999999999853 3356889999999
Q ss_pred CCC-CCceeEEEEEEcccC--CCcccEEEEc
Q 011161 85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL 112 (492)
Q Consensus 85 ~~~-~dd~IG~~~i~l~~l--~~~~~~w~~L 112 (492)
... ++++||++.+++.++ +.....||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 876 478999999999998 4445789976
No 49
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.5e-15 Score=132.06 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=89.6
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEEc
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW 83 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d~ 83 (492)
...+.|.|+|++|++|+..+..+.+||||++.+ +....+|++++++.||.|||+|.|.+.. ....|.++|||+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 345789999999999999998999999999998 3456799999999999999999997421 235699999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
+..+++++||++.+++.++ +.....|+.|.+
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 9999999999999999998 556789999864
No 50
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=2.9e-15 Score=129.45 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=90.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I 92 (492)
|.|.|+|++|++|+..+..+.+||||++.+++ ...+|+++.++.||.|||+|.|.+......|.|+|||++..+++++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 57999999999999999899999999999976 45789999999999999999999877678899999999999999999
Q ss_pred EEEEEEcccC-CCcccEEEEccC
Q 011161 93 GSVIVTVESE-GQTGAVWYTLDS 114 (492)
Q Consensus 93 G~~~i~l~~l-~~~~~~w~~L~~ 114 (492)
|++.+++.++ ....+.||.|..
T Consensus 81 G~~~~~l~~l~~~~~~~~~~~~~ 103 (120)
T cd04045 81 GSVEINVSDLIKKNEDGKYVEYD 103 (120)
T ss_pred eEEEEeHHHhhCCCCCceEEecC
Confidence 9999999998 445678888765
No 51
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.64 E-value=1.7e-15 Score=131.27 Aligned_cols=102 Identities=20% Similarity=0.372 Sum_probs=88.2
Q ss_pred CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~ 81 (492)
...+.|.|+|++|+||+..+ ..+.+||||++++.. .+.+|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 34578999999999999998 788999999998731 356899999999999999999998542 457999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 011161 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L 112 (492)
|++..+++++||++.+++.++ +...+.||+|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999998 5556889987
No 52
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=2.6e-15 Score=131.24 Aligned_cols=104 Identities=17% Similarity=0.313 Sum_probs=87.0
Q ss_pred CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEE-eeC---CCcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-i~~---~~~~L~i~v~d 82 (492)
...+.|.|+|++|+||+..+.. +.+||||++.+. .++.+|++++++.||.|||+|.|. +.. ....|.++|||
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 3457999999999999998875 899999999874 345689999999999999999994 431 23469999999
Q ss_pred cCCCCCCceeEEEEEEcccC--C--CcccEEEEccC
Q 011161 83 WDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS 114 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l--~--~~~~~w~~L~~ 114 (492)
+|..+++++||++.++|.++ . .....|.+|++
T Consensus 93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred cCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 99999999999999999998 2 34567888864
No 53
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.64 E-value=2.2e-15 Score=131.41 Aligned_cols=103 Identities=19% Similarity=0.319 Sum_probs=89.0
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d 82 (492)
...+.|.|+|++|+||+..+..+.+||||++.+. ....+|++++++.||.|||+|.|.+... ...|.+.|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 4457899999999999999988999999999984 3567999999999999999999998532 3579999999
Q ss_pred cCCC--CCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161 83 WDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (492)
Q Consensus 83 ~d~~--~~dd~IG~~~i~l~~l--~~~~~~w~~L~ 113 (492)
++.. +++++||++.+++.++ +.....||+|.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9875 6899999999999998 45567899983
No 54
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.64 E-value=3.5e-15 Score=129.69 Aligned_cols=102 Identities=26% Similarity=0.455 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeccEEEEEeeCC----CcEEEEEEEEcCCCCC
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK 88 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~i~~~----~~~L~i~v~d~d~~~~ 88 (492)
|.|.|+|++|++|+..+..+.+||||++.+++...+|++..+ +.||.|||+|.|.+..+ ...|.|+|||.+..++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999998899999999999988889998875 89999999999999765 4679999999999889
Q ss_pred CceeEEEEEEcccC--CCcccEEEEccCC
Q 011161 89 STVLGSVIVTVESE--GQTGAVWYTLDSP 115 (492)
Q Consensus 89 dd~IG~~~i~l~~l--~~~~~~w~~L~~~ 115 (492)
+++||++.+++.++ .+..+.|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999998 4567889999874
No 55
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.64 E-value=2.9e-15 Score=129.83 Aligned_cols=104 Identities=20% Similarity=0.324 Sum_probs=89.2
Q ss_pred CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW 83 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~ 83 (492)
...+.|.|+|++|++|+..+ ..+.+||||++++. ....+|++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 34578999999999999998 68899999999973 3456899999999999999999998542 35799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
+..+++++||++.++|.++ ......|++|++
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 9988899999999999998 455579999964
No 56
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=2.7e-15 Score=127.76 Aligned_cols=99 Identities=23% Similarity=0.480 Sum_probs=86.4
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-----CcEEEEEEEEcCCC
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDII 86 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-----~~~L~i~v~d~d~~ 86 (492)
..+.|+|+|++|++|+ .+.+||||++.+++++++|++++++.||.|+|+|.|.+..+ ...|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4589999999999998 57899999999999999999999999999999999987543 24699999999999
Q ss_pred CCCceeEEEEEEcccCC-----CcccEEEEccC
Q 011161 87 WKSTVLGSVIVTVESEG-----QTGAVWYTLDS 114 (492)
Q Consensus 87 ~~dd~IG~~~i~l~~l~-----~~~~~w~~L~~ 114 (492)
+++++||++.++++++. .....|++|..
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 88999999999999882 23578999853
No 57
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=3.2e-15 Score=133.18 Aligned_cols=88 Identities=25% Similarity=0.468 Sum_probs=84.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG 93 (492)
|.|.|+|++|+||+..+. +.+||||++.++++..+|++++++.||.|||+|.|.+.++...|.|+|||++.++++++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999999887 8999999999999999999999999999999999999888888999999999999999999
Q ss_pred EEEEEcccC
Q 011161 94 SVIVTVESE 102 (492)
Q Consensus 94 ~~~i~l~~l 102 (492)
++.+++.++
T Consensus 81 ~a~i~l~~l 89 (145)
T cd04038 81 EAEIDLEPL 89 (145)
T ss_pred EEEEEHHHh
Confidence 999999998
No 58
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=4.1e-15 Score=129.29 Aligned_cols=103 Identities=19% Similarity=0.348 Sum_probs=88.0
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEE-eeC---CCcEEEEEEEEc
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW 83 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-i~~---~~~~L~i~v~d~ 83 (492)
.....|.|+|++|+||++.+..+.+||||++.+. ..+.+|++.++ .||+|||+|.|. +.. ....|.|+|||+
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 4457899999999999999988999999998762 34568988887 999999999998 542 245699999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
+..+++++||++.++|+++ ......|++|++
T Consensus 92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 9999999999999999998 456788999974
No 59
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=7.7e-15 Score=128.09 Aligned_cols=106 Identities=20% Similarity=0.342 Sum_probs=90.4
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 011161 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI 96 (492)
Q Consensus 20 Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~~~dd~IG~~~ 96 (492)
|++|++|+. ..+.+||||++.+++...+|++++++.||.|||+|.|.+.. ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999988 68899999999999888999999999999999999999864 3567999999999998999999999
Q ss_pred EEcccC--CCcccEEEEccCC-----CceEEEEEEeee
Q 011161 97 VTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTIK 127 (492)
Q Consensus 97 i~l~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~~ 127 (492)
+++.++ +.....|++|..+ .|++++++.+.+
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~ 117 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQP 117 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeC
Confidence 999998 4556789999642 256666666554
No 60
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.62 E-value=3.4e-15 Score=133.88 Aligned_cols=101 Identities=26% Similarity=0.572 Sum_probs=88.5
Q ss_pred CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eeeeeeccCCCCC
Q 011161 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----------------------------EKRFSSMVPGSRY 58 (492)
Q Consensus 8 ~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----------------------------~~~~T~~~~~t~n 58 (492)
...+..+.|.|+|++|++|.++|..|.+||||++.+.. ...+|+++.+++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 56678899999999999999999999999999999852 1257999999999
Q ss_pred CeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC-CCcccEEEEc
Q 011161 59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL 112 (492)
Q Consensus 59 P~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l-~~~~~~w~~L 112 (492)
|.|||+|.|.+.++ ...|.|+|||++ +++||++.+++.++ +...+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 99999999998754 567999999987 78999999999998 4567899987
No 61
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.62 E-value=2.9e-15 Score=130.34 Aligned_cols=109 Identities=23% Similarity=0.417 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccC-CCCCCeeccEEEEEeeCC-----CcEEEEEEEEcCCCC
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW 87 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~-~t~nP~W~e~f~f~i~~~-----~~~L~i~v~d~d~~~ 87 (492)
+|+|+|++|++|+..+..+.+||||++++++ ...+|++.. ++.||.|||.|.|.+... ...|.|+|||++..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4789999999999999889999999999987 778899875 589999999999999765 567999999999888
Q ss_pred CCceeEEEEEEcccC--CCc-----ccEEEEccCCCceEEEEE
Q 011161 88 KSTVLGSVIVTVESE--GQT-----GAVWYTLDSPSGQVCLHI 123 (492)
Q Consensus 88 ~dd~IG~~~i~l~~l--~~~-----~~~w~~L~~~~G~i~l~l 123 (492)
++++||++.+++.++ +.. ...||.|..+.|+..+.|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~ 123 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVL 123 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEE
Confidence 999999999999998 221 368999987556554444
No 62
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.62 E-value=1e-15 Score=134.64 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=90.8
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d 82 (492)
...+.|.|+|++|++|++.+..+.+||||++.+.. ...+|+++++++||.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 34688999999999999999889999999999842 356899999999999999999998542 3579999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 011161 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP 115 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~ 115 (492)
++..+++++||++.+++...+.....|+++...
T Consensus 90 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINAKGERLRHWLDCLKN 122 (133)
T ss_pred CCCCCCccEEEEEEEecCCCCchHHHHHHHHhC
Confidence 999889999999999999877777889987553
No 63
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=3.9e-15 Score=135.40 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=90.0
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEE
Q 011161 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTI 80 (492)
Q Consensus 10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v 80 (492)
....+.|.|+|++|+||+..+..+.+||||++++. ...++|++++++.||.|||+|.|.+.. ....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 34678999999999999999989999999999872 346799999999999999999998532 234699999
Q ss_pred EEcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 81 ~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
||++..+++++||++.+++.++ ....+.|+.|..
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999999999999999999987 345688998864
No 64
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.61 E-value=1.2e-15 Score=118.47 Aligned_cols=66 Identities=30% Similarity=0.651 Sum_probs=48.7
Q ss_pred ceeeeeecCCcceeEEeeeeeeec-ccccceEEEEecCeeEEEeccCCcee-EEEEeccceeeEeecc
Q 011161 164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ 229 (492)
Q Consensus 164 ~f~~~F~lp~~e~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~~I~~i~k~~ 229 (492)
.|++.|+||.+|.|+.+|.|++.+ .++.+|+||||++++||+|+.++..+ +++|||.||.+|+|.+
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 689999999999999999999999 99999999999999999999999888 9999999999999964
No 65
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=5.1e-15 Score=132.52 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=85.2
Q ss_pred EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEE
Q 011161 16 IKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVT 79 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g--------------~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~ 79 (492)
|.|+|++|++|+.+|..+ .+||||+|.+++.+.+|++++++.||+|||+|.|.+.. ....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988543 68999999999999999999999999999999998743 35679999
Q ss_pred EEEcCCCCCCceeEEEEEEcccC-CCc--------ccEEEEccC
Q 011161 80 IYDWDIIWKSTVLGSVIVTVESE-GQT--------GAVWYTLDS 114 (492)
Q Consensus 80 v~d~d~~~~dd~IG~~~i~l~~l-~~~--------~~~w~~L~~ 114 (492)
|||+|..+++++||++.+++.++ ... ...|+.|..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999999999999999999987 222 246777754
No 66
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.61 E-value=1.7e-15 Score=133.58 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=88.4
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d 82 (492)
+....|.|+|++|+||+..+..+.+||||++++.. .+++|+++++++||+|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 34568999999999999999899999999999732 24579999999999999999999853 24569999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 011161 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~ 114 (492)
+|..+++++||++.+.....+....+|..+..
T Consensus 92 ~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~ 123 (136)
T cd08406 92 STEDGKTPNVGHVIIGPAASGMGLSHWNQMLA 123 (136)
T ss_pred CCCCCCCCeeEEEEECCCCCChhHHHHHHHHH
Confidence 99999999999999988777766777877654
No 67
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=3.7e-16 Score=154.79 Aligned_cols=106 Identities=25% Similarity=0.519 Sum_probs=93.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEEee--CCCcEEEEEEEEcCC
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDI 85 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~i~--~~~~~L~i~v~d~d~ 85 (492)
...|+|.|.+|+||.++|.+|.+||||.+.+ +..+++|++++.++||+|||+|+|.+. +..++|.|+|||||+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 4578899999999999999999999999997 234678999999999999999999984 446789999999999
Q ss_pred CCCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 011161 86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ 118 (492)
Q Consensus 86 ~~~dd~IG~~~i~l~~l-~~~~~~w~~L~~-~~G~ 118 (492)
.+++||+|...+.++++ ....+.||.|.+ ..|+
T Consensus 259 TsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGE 293 (683)
T ss_pred cccccccceecccHHHHhhcchhhHHHHhhhhcCc
Confidence 99999999999999999 566789999876 4454
No 68
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.60 E-value=2.6e-15 Score=132.76 Aligned_cols=107 Identities=20% Similarity=0.397 Sum_probs=90.8
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEc
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW 83 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~ 83 (492)
....|.|+|++|++|+..+..|.+||||++.+.. .+.+|++++++.||.|+|+|.|.+.. ....|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 4578999999999999999999999999999732 24578999999999999999999853 345699999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (492)
+..+++++||++.+++...+.....|++|....|+
T Consensus 93 d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRR 127 (136)
T ss_pred CCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCC
Confidence 99999999999999999876667789988654444
No 69
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.60 E-value=8e-15 Score=127.47 Aligned_cols=90 Identities=20% Similarity=0.386 Sum_probs=80.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEEEEEcCCCCCC
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIWKS 89 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~v~d~d~~~~d 89 (492)
..+.|.|+|++|++|+ .+..+.+||||+|++++...+|++++++.||.|||+|.|.... ....|.|+|||++..+++
T Consensus 26 ~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 3589999999999997 4677889999999999888999999999999999999997532 366899999999999999
Q ss_pred ceeEEEEEEcccC
Q 011161 90 TVLGSVIVTVESE 102 (492)
Q Consensus 90 d~IG~~~i~l~~l 102 (492)
++||++.++|...
T Consensus 105 d~IG~~~i~l~~~ 117 (127)
T cd04032 105 DLLGTCSVVPEAG 117 (127)
T ss_pred CeeEEEEEEecCC
Confidence 9999999999866
No 70
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.59 E-value=7.6e-16 Score=164.57 Aligned_cols=456 Identities=23% Similarity=0.265 Sum_probs=283.1
Q ss_pred CCCCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEc
Q 011161 5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW 83 (492)
Q Consensus 5 ~~~~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~ 83 (492)
++++....++......+.+.++.....++.++|+..+..............+.+|.|++.+.|.-.. +-....+..+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~e 167 (590)
T KOG1032|consen 88 KGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDE 167 (590)
T ss_pred CcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeee
Confidence 4566667777777777777777766667788999999888877788888889999999999997532 223445555555
Q ss_pred CCC-CCCceeEEEEEEccc-CCCcccEEEEccCCCceEE---EEEEeeeCccccccccccccchhhhhhccccCCCCccc
Q 011161 84 DII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV 158 (492)
Q Consensus 84 d~~-~~dd~IG~~~i~l~~-l~~~~~~w~~L~~~~G~i~---l~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~ 158 (492)
+.. .+..-.|.+...+.- .......|..|.++.+... +.+.-........+...+++...... ..-..+.+.+.
T Consensus 168 I~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~-~~~~~~~~~~~ 246 (590)
T KOG1032|consen 168 ITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPE-VNDDQQGNVDN 246 (590)
T ss_pred eeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCC-cCccccccccc
Confidence 432 222223332222211 2445577888887665543 22222222333333333333322111 00011234566
Q ss_pred ccCCCceeeeeecCCcceeEEeeeeeeecccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccCc--
Q 011161 159 HQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPA-- 236 (492)
Q Consensus 159 ~~k~~~f~~~F~lp~~e~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~~-- 236 (492)
.+.+..++..|++|..|.+..+++|.+.+..+++|+++++....+|++.+||..+.+...|+++..++-.+.....+.
T Consensus 247 ~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~ 326 (590)
T KOG1032|consen 247 SQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSG 326 (590)
T ss_pred CCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCcc
Confidence 788889999999999999999999999999999999999999999999999999999999999999999887666565
Q ss_pred -EEEEEecCCCCCCCCCCCCCC--CceeEEEeeecchHHHHHHHHHHHHhhhhhhhhhhhhhh--------hhh-hh-hc
Q 011161 237 -ITIILRMGAGGHGVPPLGSPD--GRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKA--------ESA-LR-AH 303 (492)
Q Consensus 237 -i~i~~~~g~~~~~~~~~~~~~--~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~~e~~~~~--------~s~-~~-~~ 303 (492)
.....+.++++|+..+-+.-. +...+.|..+... ++.+........+..+....... .+. +. ..
T Consensus 327 ~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~~ 403 (590)
T KOG1032|consen 327 ILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVST 403 (590)
T ss_pred ceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcceeeccee
Confidence 333333344555444433222 4456666665543 55554443333222221110000 000 00 00
Q ss_pred CCCCCCCccccccccccc--------------CCCCCCCcceeceeeeeeeeecCCccCCCCCCeeEEEEEEEecCCCCC
Q 011161 304 SSSIGGSRRQAKIVEETV--------------TKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIY 369 (492)
Q Consensus 304 ~~~~~~~~~~~~~~e~~~--------------~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~g 369 (492)
.....++.-+.-+.+... ...++. ....+...+..+.-++|+ .+..++.+|...|+..-+.+++
T Consensus 404 ~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~-v~~~~~~v~~~~~~~~~~~~i~ 481 (590)
T KOG1032|consen 404 SVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEEL-AKNQEKEDELTYEGSPWE-VEKPGGTVRQLSYKEVWNKPIS 481 (590)
T ss_pred EEEeccCchhhccccccccchhhHHHHHHHHHhccHHH-HHhhcccccccccCCCcc-ccCCCceeeeeccccccccccc
Confidence 000011111111111111 000000 001122222334455899 8888999999999986778999
Q ss_pred CCceeEeEEEEEEecCCCCeEEEEEEEecCCCCCCCeEEEEEEEEEEeeC----CCceEEEEEEeeeeEEEeccceeehh
Q 011161 370 PRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIA----ENSSTIDIKVVSAGAHFKKWCVIQFK 445 (492)
Q Consensus 370 p~~t~~~~~q~~~~~~~~~~~vi~~~~~~~dVPygd~F~v~~r~~~~~~~----~~~c~l~v~~~~~~V~~~K~t~~K~~ 445 (492)
|....++..|......+...|++++++.++|||||++|.|..||. .... ...+.+.++ ..|.|+|...++-.
T Consensus 482 ~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~~~~~---~~~~~l~~~~~~~~ 557 (590)
T KOG1032|consen 482 PDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTLVWVS---FRIEWLKDIKMEAR 557 (590)
T ss_pred cccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhhHHHH---HHHHHHHHHHHHHh
Confidence 999999999988776666789999999999999999999999997 1111 133444555 56667776666666
Q ss_pred eehhHHHhHHHHHHHHHHHHHHHHh
Q 011161 446 IKTGAVNKYKKEVELMLETARSYIK 470 (492)
Q Consensus 446 Iek~~~~~~~~~~~~~~~~~~~~~~ 470 (492)
.-+..+...++..+.++..+++.-.
T Consensus 558 ~~k~~~r~~~~~l~~~~~~l~~~~~ 582 (590)
T KOG1032|consen 558 KIKQILRNDQDLLEVLFSLLEKLSQ 582 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666655544
No 71
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=7.3e-15 Score=129.94 Aligned_cols=99 Identities=20% Similarity=0.411 Sum_probs=87.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeccCCCCCCeeccEEEEEeeCC----------------CcE
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ 75 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~i~~~----------------~~~ 75 (492)
|.|+|++|++|+.+ ..+.+||||++++. ...++|++++++.||.|+|+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999987 6678999999999999999999997543 456
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161 76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (492)
Q Consensus 76 L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~ 115 (492)
|.|+|||++..++++|||++.+++.++ ......||+|.++
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999988999999999999997 3456899999873
No 72
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.58 E-value=2.5e-15 Score=132.85 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=90.2
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEE
Q 011161 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI 80 (492)
Q Consensus 9 ~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v 80 (492)
.++..+.|.|+|++|++|+.++..+.+||||++.+. + ...+|+++++++||.|||+|.|.+... ...|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 345668999999999999999999999999999984 2 345799999999999999999998532 24699999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 011161 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (492)
Q Consensus 81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~ 114 (492)
||++..+++++||++.+++...+.....|+++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccCChHHHHHHHHHh
Confidence 9999999999999999999887766677887754
No 73
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.9e-14 Score=123.25 Aligned_cols=101 Identities=26% Similarity=0.466 Sum_probs=88.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCceeE
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd~IG 93 (492)
|+|.|++|++|+..+..+.+||||++.+.+ ...+|+++.++.+|.|+|+|.|.+.. ....+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999999888999999999965 44689999999999999999999865 4577999999999988999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCC
Q 011161 94 SVIVTVESE--GQTGAVWYTLDSPS 116 (492)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~ 116 (492)
++.+++.++ +...+.|++|.++.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g 105 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQG 105 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCC
Confidence 999999997 45568899998743
No 74
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=3.7e-14 Score=121.67 Aligned_cols=105 Identities=29% Similarity=0.437 Sum_probs=85.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCCCCCce
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV 91 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~~~dd~ 91 (492)
|.|+|++|++|+.. +.+||||.+++++.. .+|+++.+ .||.|||+|.|.+.. ....|.+.+||.+....+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 789999999998754 68999988 999999999999865 23568888999887767778
Q ss_pred eEEEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 011161 92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (492)
Q Consensus 92 IG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~ 124 (492)
+|.+.+.....+...+.|++|.+. .|+|++.+.
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 888777666667777899999763 477777764
No 75
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.57 E-value=2.1e-14 Score=126.01 Aligned_cols=105 Identities=27% Similarity=0.493 Sum_probs=91.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC--CcEEEEEEEEcCCC
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII 86 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~--~~~L~i~v~d~d~~ 86 (492)
+.|.|+|++|++|+..+..+.+||||.+.+. ....+|+++.++.||.|+|+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 7899999999999998888899999999985 2567899999999999999999998643 46799999999988
Q ss_pred CCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 011161 87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ 118 (492)
Q Consensus 87 ~~dd~IG~~~i~l~~l-~~~~~~w~~L~~-~~G~ 118 (492)
+++++||++.+++.++ ......||+|.. +.|+
T Consensus 93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~ 126 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE 126 (131)
T ss_pred CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence 8999999999999998 446678999976 3454
No 76
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.56 E-value=1.2e-14 Score=128.22 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v 80 (492)
+..+.|.|.|++|+||.+++. .+.+||||++++.. .+++|+++++++||+|||+|.|.+.. ....|.|+|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 445789999999999999983 35599999999743 24589999999999999999999854 245699999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 011161 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (492)
Q Consensus 81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~ 113 (492)
||+|..+++++||++.+++...+....+|..+.
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml 124 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHTSGTERQHWEEML 124 (138)
T ss_pred EeCCCCcCcceeceEEecCcCCCcHHHHHHHHH
Confidence 999999999999999999987666666666653
No 77
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.56 E-value=2.6e-14 Score=125.79 Aligned_cols=92 Identities=22% Similarity=0.419 Sum_probs=81.4
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeeeeeeccCCCCCCeeccEEEEEeeC-----CCcEEEEE
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVT 79 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~i~~-----~~~~L~i~ 79 (492)
....|.|+|++|++|+..+..+.+||||++++. ....+|+++++++||.|||+|.|.+.. ....|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 357899999999999999988999999999984 345799999999999999999999854 24579999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCC
Q 011161 80 IYDWDIIWKSTVLGSVIVTVESEG 103 (492)
Q Consensus 80 v~d~d~~~~dd~IG~~~i~l~~l~ 103 (492)
|||++..+++++||++.++|.++.
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCC
Confidence 999999998999999999999883
No 78
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.55 E-value=9.7e-15 Score=129.04 Aligned_cols=105 Identities=27% Similarity=0.440 Sum_probs=88.7
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeC--C-CcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~--~-~~~L~i~v~d 82 (492)
...+.|.|+|++|+||+..+..+.+||||++.+. + ...+|++++++.||.|||+|.|.+.. . ...|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 3457899999999999999989999999999872 2 24589999999999999999998742 2 3579999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 011161 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP 115 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~ 115 (492)
++..+++++||++.+++.+.+.....|+++...
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~ 124 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSK 124 (136)
T ss_pred CCCCCCCcEeEEEEECCccCCchHHHHHHHHhC
Confidence 999999999999999999876666778776543
No 79
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.55 E-value=8e-15 Score=129.23 Aligned_cols=107 Identities=23% Similarity=0.414 Sum_probs=89.3
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d 82 (492)
...+.|+|+|++|++|++++..|.+||||++.+. + ...+|+++.++.||.|+|+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 4568899999999999999999999999999973 2 245888889999999999999987431 2459999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 011161 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G 117 (492)
++..+++++||++.+++...+.....|+++....|
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~ 125 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNADGQGREHWNEMLANPR 125 (134)
T ss_pred CCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCC
Confidence 99999999999999998866666677888754333
No 80
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.54 E-value=3.2e-14 Score=123.71 Aligned_cols=89 Identities=24% Similarity=0.500 Sum_probs=79.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCce
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV 91 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~ 91 (492)
+|+|.|++|++|+.++..+.+||||++.+++.. .+|+++++++||.|||+|.|.+..+ ...|.|+|||++..+++++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 478999999999999999999999999998765 4788888999999999999987543 4679999999999999999
Q ss_pred eEEEEEEcccCC
Q 011161 92 LGSVIVTVESEG 103 (492)
Q Consensus 92 IG~~~i~l~~l~ 103 (492)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999874
No 81
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.54 E-value=1.2e-14 Score=128.33 Aligned_cols=107 Identities=22% Similarity=0.452 Sum_probs=87.9
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-C----eeeeeeccCCCCCCeeccEEEEEeeC--C-CcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-S----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-~----~~~~T~~~~~t~nP~W~e~f~f~i~~--~-~~~L~i~v~d 82 (492)
+..+.|.|+|++|++|+..+..|.+||||++.+. + ..++|++++++.||.|||+|.|.+.. . ...|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 4558899999999999999999999999999972 2 34689999999999999999999842 2 2369999999
Q ss_pred cCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCc
Q 011161 83 WDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSG 117 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l~~-~~~~w~~L~~~~G 117 (492)
++..+++++||++.+.....+. ...+|+.|....|
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~ 126 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQR 126 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCC
Confidence 9999999999999887766644 4577888765433
No 82
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.54 E-value=3.8e-14 Score=122.42 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=81.8
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeccEEEEEee-CCCcEEEEEEEEcCC----CC
Q 011161 20 LLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----IW 87 (492)
Q Consensus 20 Vi~a~~L~~~d~~g~sDPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~i~-~~~~~L~i~v~d~d~----~~ 87 (492)
.++|++|+..+..+.+||||++++... ..+|+++++++||.|+|+|.|.+. +....|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 588999999999999999999998654 368999999999999999999864 345579999999997 78
Q ss_pred CCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 88 KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 88 ~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
++++||++.+++.++ +.....|++|.+
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 999999999999998 455677888844
No 83
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.54 E-value=1.4e-13 Score=121.39 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=82.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CeeeeeeccCCCCCCee-ccEEEEEeeCCCcEEEEEE
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-------------SEKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI 80 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-------------~~~~~T~~~~~t~nP~W-~e~f~f~i~~~~~~L~i~v 80 (492)
+..|.+++|++|+ ++..|.+||||++++. .+..+|+++.+++||.| ||+|.|.+.. ...|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4689999999998 7788999999999984 23579999999999999 9999999853 56899999
Q ss_pred EEcCCCCC---CceeEEEEEEcccCC-----CcccEEEEccCC
Q 011161 81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP 115 (492)
Q Consensus 81 ~d~d~~~~---dd~IG~~~i~l~~l~-----~~~~~w~~L~~~ 115 (492)
||++..+. +++||++.+++.++. .....|++|..+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99875443 689999999999982 225679999763
No 84
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.53 E-value=2e-13 Score=122.33 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=88.6
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEEeeCC---------CcEEEEE
Q 011161 16 IKLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVT 79 (492)
Q Consensus 16 L~V~Vi~a~~--L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~i~~~---------~~~L~i~ 79 (492)
..++|..|++ |+..+..+.+||||++++ ..++.+|+++++|+||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455666666 777777889999999986 23567999999999999999999998543 2359999
Q ss_pred EEEcCCC-CCCceeEEEEEEcccC--CCcccEEEEccC----CCceEEEEEEee
Q 011161 80 IYDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTI 126 (492)
Q Consensus 80 v~d~d~~-~~dd~IG~~~i~l~~l--~~~~~~w~~L~~----~~G~i~l~l~~~ 126 (492)
|||++.+ .+|++||++.++|..+ ......|++|.. ..|.+.+.+++.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence 9999986 4799999999999998 445677999863 247788887765
No 85
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.53 E-value=1.7e-14 Score=126.90 Aligned_cols=107 Identities=26% Similarity=0.447 Sum_probs=91.9
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW 83 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~ 83 (492)
..+.|.|+|++|++|+..+..+.+||||++.+... ..+|+++.++.||.|||+|.|.+... ...|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 35789999999999999988899999999998532 45899999999999999999998653 46799999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (492)
+..+++++||++.+++.+.+...+.|++|....|+
T Consensus 92 ~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK 126 (134)
T ss_pred CCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence 98888999999999999976777889998764343
No 86
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.53 E-value=1.9e-13 Score=121.20 Aligned_cols=97 Identities=24% Similarity=0.284 Sum_probs=82.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeee-eeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC----
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW---- 87 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~---- 87 (492)
-..|.|.|++|++|+.++ +|||.|.+++... ||+++.++.||.|+|.|.|....+...+.|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 456899999999998865 8999999999884 999999999999999999986555677999998765322
Q ss_pred CCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 88 KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 88 ~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
++++||.+.|++.++ +...+.||+|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 578999999999998 556789999976
No 87
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.52 E-value=4.9e-14 Score=122.89 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=84.3
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCC-CCeeccEEEEEeeCC--CcEEEEEEE
Q 011161 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDEL--PVQIIVTIY 81 (492)
Q Consensus 10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~-nP~W~e~f~f~i~~~--~~~L~i~v~ 81 (492)
.+..+.|+|.|++|+||++....+..||||+|++- -.+++|+++++++ ||.|||+|.|.+... ...|.|+||
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence 45678999999999999998667778999999863 1356899999995 699999999998532 345889999
Q ss_pred EcCCCCCCceeEEEEEEcccC-CCcccEEEEc
Q 011161 82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL 112 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l-~~~~~~w~~L 112 (492)
|++..+++++||++.+..+.. +....+|.+.
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m 121 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSSSSEAVEQWKDT 121 (135)
T ss_pred eCCCCcCCceEEEEEECCccCCchhhhhHHHH
Confidence 999999999999999999875 3446677665
No 88
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.52 E-value=2.5e-14 Score=126.58 Aligned_cols=105 Identities=19% Similarity=0.337 Sum_probs=88.7
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEE
Q 011161 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (492)
Q Consensus 10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v 80 (492)
....+.|.|+|++|+||++++..+.+||||++.+.. .+++|++++++.||+|||+|.|.+.. ....|.|+|
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 345688999999999999999999999999999731 24589999999999999999999853 245799999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCC-cccEEEEccC
Q 011161 81 YDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDS 114 (492)
Q Consensus 81 ~d~d~~~~dd~IG~~~i~l~~l~~-~~~~w~~L~~ 114 (492)
||++..+++++||++.+++...+. ...+|+.+..
T Consensus 91 ~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~ 125 (138)
T cd08408 91 YNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKE 125 (138)
T ss_pred EECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHh
Confidence 999999999999999999887753 4467887754
No 89
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.52 E-value=2.5e-13 Score=118.23 Aligned_cols=99 Identities=16% Similarity=0.269 Sum_probs=83.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I 92 (492)
..|.|+|++|+ |...+..+.+||||.+++++. ..+|+++.++.||.|+|.|.|.+.. ...|.|+|||++..+.+++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence 46899999998 555556889999999999877 7899999999999999999999864 57899999999999899999
Q ss_pred EEEEEEcccCC-----Cc--ccEEEEccC
Q 011161 93 GSVIVTVESEG-----QT--GAVWYTLDS 114 (492)
Q Consensus 93 G~~~i~l~~l~-----~~--~~~w~~L~~ 114 (492)
|++.+++.++. .. ...|++|..
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~ 108 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSS 108 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEc
Confidence 99999999871 11 235888853
No 90
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.51 E-value=4.3e-14 Score=106.91 Aligned_cols=60 Identities=35% Similarity=0.682 Sum_probs=56.9
Q ss_pred ecCCcceeEEeeeeeeecccccceEEEEecCeeEEEeccCCcee-EEEEeccceeeEeecc
Q 011161 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ 229 (492)
Q Consensus 170 ~lp~~e~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~~I~~i~k~~ 229 (492)
+||++|.|+.+|.|+|.+.++++|+||+|++++||+|+.+|+.+ +++||+.||.+|+|.+
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~ 61 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST 61 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence 37899999999999999999999999999999999999999988 9999999999999863
No 91
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=2e-13 Score=116.25 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCc
Q 011161 31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT 105 (492)
Q Consensus 31 ~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l---~~~ 105 (492)
.+|.+||||.+.++++ ..+|+++.++.||.|||.|.|.+.+. ...|.|.|||++.. ++++||.+.++|.++ ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 5788999999999875 46899999999999999999998764 46699999999998 899999999999987 233
Q ss_pred ccEEEEccC-CCceEEEEEEeee
Q 011161 106 GAVWYTLDS-PSGQVCLHIKTIK 127 (492)
Q Consensus 106 ~~~w~~L~~-~~G~i~l~l~~~~ 127 (492)
...||+|.. +.|+|++++.+.+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 578999974 4799998888765
No 92
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.49 E-value=3.8e-13 Score=116.65 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=83.5
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEE
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYD 82 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d 82 (492)
..+.|.|+|++|++|++.+..+.+||||++.+. ....+|++++++.||.|+|+|.|.... ....+.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 457899999999999999888999999999973 235789999999999999999996322 13579999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 011161 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L 112 (492)
++.. .+++||++.+++.++......|+.+
T Consensus 93 ~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 93 EDRF-GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred cCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence 9988 8899999999999996555555543
No 93
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.48 E-value=1e-12 Score=114.51 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=84.7
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeccCCCC-CCeeccEEEEEeeCCC-cEEEEEEEEc
Q 011161 14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITCG------SEKRFSSMVPGSR-YPMWGEEFNFSVDELP-VQIIVTIYDW 83 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d--~~g~sDPyv~v~~~------~~~~~T~~~~~t~-nP~W~e~f~f~i~~~~-~~L~i~v~d~ 83 (492)
..|+|+|++|++|+..+ ..+..||||++++. ..+.+|+++.++. ||.|+|+|.|.+..+. ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 47899999999999888 57899999999983 4457899887765 9999999999987544 4599999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCC
Q 011161 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPS 116 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~ 116 (492)
+.. ++++||.+.+++.++.. ...|++|..+.
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~-g~~~~~l~~~~ 112 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ-GYRHVPLLDSK 112 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC-ceEEEEecCCC
Confidence 988 89999999999999954 35788986533
No 94
>PLN03008 Phospholipase D delta
Probab=99.47 E-value=3.4e-13 Score=146.04 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=98.7
Q ss_pred ceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCee-ee
Q 011161 13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSEK-RF 49 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~------------------------------------------~g~sDPyv~v~~~~~~-~~ 49 (492)
.|.|.++|.+|++|+.+|. .+++||||+|.+++.+ .|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 5788999999999986331 2467999999998764 59
Q ss_pred eeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccC-------CCceEE
Q 011161 50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS-------PSGQVC 120 (492)
Q Consensus 50 T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~-------~~G~i~ 120 (492)
|+++.+++||+|||+|.|.+.++...|.|+|||+|.++ +++||++.|++.++ +...+.|++|.. ..++|+
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~ 171 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF 171 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence 99999999999999999999887889999999999996 58999999999998 556779999965 126788
Q ss_pred EEEEeeeCccc
Q 011161 121 LHIKTIKLPVN 131 (492)
Q Consensus 121 l~l~~~~~~~~ 131 (492)
+++++.+....
T Consensus 172 v~lqf~pv~~~ 182 (868)
T PLN03008 172 IDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEcccc
Confidence 88888876544
No 95
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=7.5e-13 Score=137.67 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=116.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCC
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII 86 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~ 86 (492)
...|.|+|++|++|+.+|..|.+||||++++. +.+.+|++.++++||.|||+|.|.+.. ....|.+.|||+|++
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drf 245 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRF 245 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCc
Confidence 45789999999999999977789999999984 345689999999999999999999742 356799999999999
Q ss_pred CCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeeeCccccccccccccchhhhhhccccCCCCcc
Q 011161 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTV 157 (492)
Q Consensus 87 ~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~ 157 (492)
+++++||++.++|..+ ......|.+|.+. .|++.+++.+.+..-.- .-... +-+.+...+
T Consensus 246 sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~l----tv~v~-------kar~L~~~~ 314 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRL----TVVVI-------KARNLKSMD 314 (421)
T ss_pred ccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeE----EEEEE-------EecCCCccc
Confidence 9999999999998887 3335789999762 26899998888662211 00000 112233344
Q ss_pred cccCCCceeeeeecCCcceeEE
Q 011161 158 VHQKPGPLQTIFNLLPDEFVEL 179 (492)
Q Consensus 158 ~~~k~~~f~~~F~lp~~e~l~~ 179 (492)
....+++|.+..-++.+.++..
T Consensus 315 ~~~~~d~~Vk~~l~~~~~~~~k 336 (421)
T KOG1028|consen 315 VGGLSDPYVKVTLLDGDKRLSK 336 (421)
T ss_pred CCCCCCccEEEEEecCCceeee
Confidence 5555667777776665544333
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.46 E-value=3.7e-13 Score=114.28 Aligned_cols=94 Identities=21% Similarity=0.368 Sum_probs=78.3
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeccCCCCCCeeccEEEEEeeC-----CCcEEEEEEEEcCCC
Q 011161 18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDII 86 (492)
Q Consensus 18 V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~------~~~T~~~~~t~nP~W~e~f~f~i~~-----~~~~L~i~v~d~d~~ 86 (492)
+-.++|++|+.++..+.+||||++++... ..+|+++++++||.|+ +|.|.+.+ ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 34679999999999999999999997432 4699999999999999 78877532 256799999999999
Q ss_pred CCCceeEEEEEEcccCCCcccEEEEc
Q 011161 87 WKSTVLGSVIVTVESEGQTGAVWYTL 112 (492)
Q Consensus 87 ~~dd~IG~~~i~l~~l~~~~~~w~~L 112 (492)
+++++||++.+++.++......++.+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~~~ 108 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEFEL 108 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence 99999999999999996555555554
No 97
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.45 E-value=6.5e-13 Score=112.82 Aligned_cols=81 Identities=15% Similarity=0.339 Sum_probs=69.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEc-------
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW------- 83 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~------- 83 (492)
|.|+|.+|+||+ +.+||||.+.++. ...+|+++.+++||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 579999999995 4589999998852 34799999999999999999999964 67899999998
Q ss_pred CCCCCCceeEEEEEEcccC
Q 011161 84 DIIWKSTVLGSVIVTVESE 102 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l 102 (492)
|..++|+.+|.+.+.|+.-
T Consensus 75 d~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred cccCcccEEEEEEEEECHH
Confidence 5667899999999988753
No 98
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.45 E-value=1.7e-13 Score=121.20 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=84.3
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC--C-CcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~--~-~~~L~i~v~d 82 (492)
+..+.|.|+|++|+||++.+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.+.. . ...|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 34578999999999999998 88899999999742 35589999999999999999999853 2 3569999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
.+..+++++||++.+..... +....+|..+..
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99999999999999986543 444566766543
No 99
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.5e-13 Score=139.93 Aligned_cols=114 Identities=31% Similarity=0.522 Sum_probs=101.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCC------
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII------ 86 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~------ 86 (492)
...++++|++|++|..+|..|++||||.+.+++.++||+++...+||+|+|.|.|++++...++++.|||+|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999899999999998853
Q ss_pred -----CCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEee
Q 011161 87 -----WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTI 126 (492)
Q Consensus 87 -----~~dd~IG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~~ 126 (492)
..|||+|+..|.+..+....+.||.|+.+ +|.|+++|.+.
T Consensus 374 qkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE
Confidence 35899999999999998888999999863 37777766644
No 100
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.42 E-value=5.6e-13 Score=156.71 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=98.4
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCCC--cEEEEEEEEcCCCCC
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIWK 88 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~~--~~L~i~v~d~d~~~~ 88 (492)
-.|.|.|+|++|+||. +..|.+||||++.++++ +.+|++++++.||.|||.|+|.+.+++ ..|.|+|||+|.+++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 3689999999999997 45789999999999965 778999999999999999999988765 679999999999865
Q ss_pred CceeEEEEEEcccC--CCcccEEEEccC---CCce---EEEEEEee
Q 011161 89 STVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI 126 (492)
Q Consensus 89 dd~IG~~~i~l~~l--~~~~~~w~~L~~---~~G~---i~l~l~~~ 126 (492)
+ .||++.|++.++ ++....||+|.+ +.|+ +.+++.|.
T Consensus 2056 d-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2056 S-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred C-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 5 899999999998 566789999985 6788 88887775
No 101
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.31 E-value=1.5e-11 Score=98.45 Aligned_cols=81 Identities=26% Similarity=0.505 Sum_probs=72.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCce
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd~ 91 (492)
|+|+|++|+||+..+..+..+||+++.+.. ...+|+++.++.+|.|+++|.|.+.. ....|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999876 56899999999999999999999743 34459999999999988999
Q ss_pred eEEEE
Q 011161 92 LGSVI 96 (492)
Q Consensus 92 IG~~~ 96 (492)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.17 E-value=2.6e-10 Score=93.05 Aligned_cols=97 Identities=30% Similarity=0.574 Sum_probs=84.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCceeE
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd~IG 93 (492)
|.|.|++|++|.........+|||.+.+.. ...+|.+..++.||.|++.|.|.+.. ....|.|+||+.+..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998877778899999999987 77899999999999999999999876 5677999999999887789999
Q ss_pred EEEEEcccCC---CcccEEEEc
Q 011161 94 SVIVTVESEG---QTGAVWYTL 112 (492)
Q Consensus 94 ~~~i~l~~l~---~~~~~w~~L 112 (492)
.+.+++..+. .....|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999874 445677764
No 103
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.14 E-value=1.1e-10 Score=122.47 Aligned_cols=114 Identities=24% Similarity=0.389 Sum_probs=101.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I 92 (492)
..|.|.|.+|+||++.+..|.+||||.|.++++. .||.++.+++.|-|.|+|.|.++..-..|.|-|||.| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 4588999999999999999999999999998654 6999999999999999999999876778999999999 8999999
Q ss_pred EEEEEEcccC--CCcccEEEEccC------CCceEEEEEEeeeC
Q 011161 93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKL 128 (492)
Q Consensus 93 G~~~i~l~~l--~~~~~~w~~L~~------~~G~i~l~l~~~~~ 128 (492)
|.+.|.=.++ .++.+.|+.|.+ -.|++++++.+...
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 9999988887 467899999976 24999999887654
No 104
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.14 E-value=4.8e-10 Score=91.91 Aligned_cols=89 Identities=24% Similarity=0.494 Sum_probs=78.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCc
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd 90 (492)
.|.|.|++|++|......+..+|||.+.+... ..+|+++.++.||.|+++|.|.+..+ ...|.|+|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999988876678999999998764 68999999889999999999999776 778999999999887789
Q ss_pred eeEEEEEEcccCC
Q 011161 91 VLGSVIVTVESEG 103 (492)
Q Consensus 91 ~IG~~~i~l~~l~ 103 (492)
++|.+.+++.++.
T Consensus 81 ~~G~~~~~l~~~~ 93 (101)
T smart00239 81 FIGQVTIPLSDLL 93 (101)
T ss_pred eeEEEEEEHHHcc
Confidence 9999999998873
No 105
>PLN02223 phosphoinositide phospholipase C
Probab=99.06 E-value=2e-09 Score=112.77 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=85.0
Q ss_pred ceEEEEEEEEeecCCC-----CCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCCcE-EEEEEE
Q 011161 13 AYLIKLELLAAKNLIG-----ANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ-IIVTIY 81 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~-----~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~-L~i~v~ 81 (492)
...|.|+|+.|++++. .+.....||||+|.+. ....+|.+..++.||.|||+|.|.+..+... |.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998741 1234568999999974 2345787778889999999999999776654 899999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (492)
|+|..+.++|+|++.+|+..+..+ -++++|..+.|.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~ 523 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGK 523 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcC
Confidence 999988899999999999999765 578888776665
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.06 E-value=1.1e-09 Score=95.55 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=73.5
Q ss_pred EEEEEEEeecCCCCC--CCCC--CCcEEEEEECC---eeeeeeccCCCCC--CeeccEEEEEeeC---------------
Q 011161 16 IKLELLAAKNLIGAN--LNGT--SDPYAIITCGS---EKRFSSMVPGSRY--PMWGEEFNFSVDE--------------- 71 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d--~~g~--sDPyv~v~~~~---~~~~T~~~~~t~n--P~W~e~f~f~i~~--------------- 71 (492)
|+|.|..|++++..+ ..|. +||||+..+.. .+++|.+.++++| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999965443 3664 99999999854 4678999999999 9999999987643
Q ss_pred ---------CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 011161 72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (492)
Q Consensus 72 ---------~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l 102 (492)
....|.++|||.|.+++|++||.+++++..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l 121 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL 121 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence 1245999999999999999999999999988
No 107
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.1e-09 Score=114.16 Aligned_cols=91 Identities=27% Similarity=0.447 Sum_probs=78.6
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC--C-CcEEEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD 82 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~--~-~~~L~i~v~d 82 (492)
+..+.|+|.|++|+||+.++..+.+||||++++- ..+++|.+.++++||+|||+|.|.+.. . ...|.|+|||
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 4468999999999999999999999999999963 234579999999999999999998852 2 3459999999
Q ss_pred cCCCCCCceeEEEEEEccc
Q 011161 83 WDIIWKSTVLGSVIVTVES 101 (492)
Q Consensus 83 ~d~~~~dd~IG~~~i~l~~ 101 (492)
+|.++.+++||++.+....
T Consensus 375 ~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 375 HDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccccceeeEEEecCCC
Confidence 9999999999998887775
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=98.92 E-value=1.1e-08 Score=109.53 Aligned_cols=105 Identities=16% Similarity=0.266 Sum_probs=84.3
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCC-cEEEEEE
Q 011161 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTI 80 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~------d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~-~~L~i~v 80 (492)
...|.|+|+.|++|+.. +.....||||+|.+- ..+.+|+++.++.||.|+|+|.|.+..+. ..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46799999999987531 112345999999873 34568999999999999999999987654 3489999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (492)
Q Consensus 81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (492)
||+|..+.++|+|++.+|+..+..+ .+|++|..+.|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~G-yR~VpL~~~~G~ 585 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPG-IRSVPLHDKKGE 585 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCC-ceeEeCcCCCCC
Confidence 9999988899999999999999765 469999765443
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.88 E-value=1.7e-08 Score=107.80 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=84.2
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCCc-EEEEEE
Q 011161 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI 80 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~------d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~-~L~i~v 80 (492)
..+|.|+|+.|++++.. +.....||||+|.+- ..+.+|++..++.||.|+|+|.|.+..+.. .|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999987421 223457999999973 334688888889999999999999876554 489999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (492)
Q Consensus 81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (492)
+|+|..+.++|+|+..+|+..+..+ -+.++|..+.|.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G-yR~V~L~~~~G~ 584 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQG-IHAVPLFNRKGV 584 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCc-cceEeccCCCcC
Confidence 9999988999999999999999765 457788776654
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.88 E-value=6.7e-09 Score=114.95 Aligned_cols=104 Identities=23% Similarity=0.382 Sum_probs=89.5
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEee-CCCcEEEEEEEEcCCCCC
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWK 88 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~-~~~~~L~i~v~d~d~~~~ 88 (492)
.+.|-|+|.+..|.||+..|.+|.+||||++.+++. .++|+++++++||+|||++.+++. .....+.+.|+|||...+
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence 457889999999999999999999999999999876 579999999999999999999986 446779999999999999
Q ss_pred CceeEEEEEEcccCCCcc-cE-EEEccC
Q 011161 89 STVLGSVIVTVESEGQTG-AV-WYTLDS 114 (492)
Q Consensus 89 dd~IG~~~i~l~~l~~~~-~~-w~~L~~ 114 (492)
++.||.+.++|..+.+.. .. -.+|..
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccC
Confidence 999999999999984332 23 344544
No 111
>PLN02270 phospholipase D alpha
Probab=98.88 E-value=2.2e-08 Score=109.17 Aligned_cols=117 Identities=17% Similarity=0.306 Sum_probs=95.3
Q ss_pred ceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCee-eeeeccCCC-CCCeeccEEEEEeeCC
Q 011161 13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDEL 72 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d------------------~~g~sDPyv~v~~~~~~-~~T~~~~~t-~nP~W~e~f~f~i~~~ 72 (492)
.|.|.|+|++|++|+..+ ..+.+||||.|.+++.+ .||+++.+. .||.|+|+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 578999999999998631 12467999999998766 499999885 6999999999999888
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-------ceEEEEEEeeeCcc
Q 011161 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-------GQVCLHIKTIKLPV 130 (492)
Q Consensus 73 ~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~~-------G~i~l~l~~~~~~~ 130 (492)
...+.|+|.|.|.++.. +||.+.+|+.++ +...+.|+++.... .+|++++++.+...
T Consensus 87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 ASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred cceEEEEEecCCccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 89999999999988654 999999999998 55688999986522 24667777766443
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.84 E-value=4.8e-08 Score=104.22 Aligned_cols=105 Identities=14% Similarity=0.247 Sum_probs=83.5
Q ss_pred ceEEEEEEEEeecCC----CC--CCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCCc-EEEEEE
Q 011161 13 AYLIKLELLAAKNLI----GA--NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI 80 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~----~~--d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~-~L~i~v 80 (492)
...|.|+|+.|++++ .. +.....||||+|.+. ..+.+|+++.++.||.|+|+|.|.+..+.. .|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 123457999999973 345689999999999999999999876554 489999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (492)
Q Consensus 81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (492)
||+|..+.++|+|+..+|+..+..+ -+.++|..+.|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G-yR~V~L~~~~g~ 567 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG-IRAFPLHSRKGE 567 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc-cceEEccCCCcC
Confidence 9999888899999999999999665 557788765554
No 113
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.83 E-value=1.5e-08 Score=108.35 Aligned_cols=105 Identities=21% Similarity=0.352 Sum_probs=84.3
Q ss_pred EEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eeeeeecc-CCCCCCeeccEEEEEeeCCCcE-EEEEEEEc
Q 011161 15 LIKLELLAAKNLIGA-NL---NGTSDPYAIITCGS-----EKRFSSMV-PGSRYPMWGEEFNFSVDELPVQ-IIVTIYDW 83 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~-d~---~g~sDPyv~v~~~~-----~~~~T~~~-~~t~nP~W~e~f~f~i~~~~~~-L~i~v~d~ 83 (492)
+|.|.|+.|+++.+. +. ...+||||.|.+.+ ...+|+++ .++-||.|+|+|.|.+..|... |+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 899999999976543 22 35689999999743 34589955 6679999999999999876654 89999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCceEE
Q 011161 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~ 120 (492)
|..++|+|+|+..+|+..+.++ -+-++|.++.|+..
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~G-yRhVpL~~~~G~~~ 732 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQG-YRHVPLLSREGEAL 732 (746)
T ss_pred CCCCcccccceeeccHHHhhCc-eeeeeecCCCCccc
Confidence 9999999999999999999765 45667777666643
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=98.79 E-value=6.9e-08 Score=102.78 Aligned_cols=105 Identities=12% Similarity=0.194 Sum_probs=82.7
Q ss_pred ceEEEEEEEEeecCCC---CC---CCCCCCcEEEEEEC-----CeeeeeeccCCCCCCee-ccEEEEEeeCCCc-EEEEE
Q 011161 13 AYLIKLELLAAKNLIG---AN---LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMW-GEEFNFSVDELPV-QIIVT 79 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~---~d---~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W-~e~f~f~i~~~~~-~L~i~ 79 (492)
...|+|+|++|++|+. .+ .....||||+|.+. ..+.+|+++.++.||.| +|+|.|.+..+.. .|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 11 23348999999973 33468999988899999 9999999876543 48999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (492)
Q Consensus 80 v~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (492)
|+|+|..+.++|+|++.+|+..+..+ -+.++|.++.|+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~ 547 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK 547 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence 99999888899999999999999664 567788765544
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.79 E-value=1.4e-09 Score=114.11 Aligned_cols=121 Identities=26% Similarity=0.484 Sum_probs=96.6
Q ss_pred CCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------C-------e------------------eeeeeccCC
Q 011161 7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------S-------E------------------KRFSSMVPG 55 (492)
Q Consensus 7 ~~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~------~-------~------------------~~~T~~~~~ 55 (492)
.+...+.+.+.|.+.+|++|..+|.+|.+|||+...+- + + .+-|++.+.
T Consensus 107 ~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~ 186 (1103)
T KOG1328|consen 107 KQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK 186 (1103)
T ss_pred cCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc
Confidence 34456677788899999999999999999999987541 0 0 012788899
Q ss_pred CCCCeeccEEEEEeeCC-CcEEEEEEEEcCCC---------------------------------CC---CceeEEEEEE
Q 011161 56 SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDII---------------------------------WK---STVLGSVIVT 98 (492)
Q Consensus 56 t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~---------------------------------~~---dd~IG~~~i~ 98 (492)
|+||.|+|.|.|.+.+. ...+.+-+||+|.- +. |||+|++.+|
T Consensus 187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip 266 (1103)
T KOG1328|consen 187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP 266 (1103)
T ss_pred cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 99999999999999875 45699999998831 22 7999999999
Q ss_pred cccC-CCcccEEEEccCCC------ceEEEEEEeee
Q 011161 99 VESE-GQTGAVWYTLDSPS------GQVCLHIKTIK 127 (492)
Q Consensus 99 l~~l-~~~~~~w~~L~~~~------G~i~l~l~~~~ 127 (492)
+.++ ..+.++||+|++++ |++++.+.+..
T Consensus 267 l~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 267 LAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred hhcCCcchHHHHhccCcccccccccceEEEEEEEee
Confidence 9999 56679999999843 88888877653
No 116
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.79 E-value=2.4e-08 Score=82.24 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=69.7
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCce
Q 011161 16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d---~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~ 91 (492)
|.|+|.+|+++...+ +.+.+||||.|.++.. +.||++ +.||.|||+|.|.+. ....+.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 578999999999888 6788999999999876 678887 479999999999995 47889999999854 35568
Q ss_pred eEEEEEEcccC
Q 011161 92 LGSVIVTVESE 102 (492)
Q Consensus 92 IG~~~i~l~~l 102 (492)
||...+.++++
T Consensus 76 i~llW~~~sdi 86 (109)
T cd08689 76 VGLLWLRLSDI 86 (109)
T ss_pred eeeehhhHHHH
Confidence 89988888876
No 117
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.79 E-value=3.5e-08 Score=109.37 Aligned_cols=120 Identities=17% Similarity=0.344 Sum_probs=96.9
Q ss_pred CCCCceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCC
Q 011161 9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85 (492)
Q Consensus 9 ~~~~~~~L~V~Vi~a~~L~~~d--~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~ 85 (492)
++..-|+|.|+|.+|++|...+ ..+..|||+.+.... ...+|++.+++.||+|||+|.+.+......|.++|||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 7788999999999999999888 589999999998643 3459999999999999999999988778899999999999
Q ss_pred CCCCceeEEEEEEcccCC---CcccEEEEccC---CCceEEEEEEeeeC
Q 011161 86 IWKSTVLGSVIVTVESEG---QTGAVWYTLDS---PSGQVCLHIKTIKL 128 (492)
Q Consensus 86 ~~~dd~IG~~~i~l~~l~---~~~~~w~~L~~---~~G~i~l~l~~~~~ 128 (492)
..+|+.+|.+.++|..+. .....-+.+.. ..|+++-.+++.+.
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecc
Confidence 999999999999998772 11222333322 24777666666654
No 118
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.68 E-value=1.1e-08 Score=107.61 Aligned_cols=91 Identities=25% Similarity=0.405 Sum_probs=79.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCCCCCCeeccEEEEEeeCC-----CcEEEEE
Q 011161 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVT 79 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~t~nP~W~e~f~f~i~~~-----~~~L~i~ 79 (492)
+.-.|.|.|+.|+++.+.|.+|.+||||+|.+.. ..++|+++.+|+||+|+|+|.|.+... ..-+.|+
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 3446788899999999999999999999999863 345899999999999999999998532 2238999
Q ss_pred EEEcCCCCCCceeEEEEEEcccC
Q 011161 80 IYDWDIIWKSTVLGSVIVTVESE 102 (492)
Q Consensus 80 v~d~d~~~~dd~IG~~~i~l~~l 102 (492)
|+|+|-+..+||-|++.+.|+++
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred eeccceecccccchHHHHhhCCC
Confidence 99999999999999999999988
No 119
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.64 E-value=1e-07 Score=98.14 Aligned_cols=114 Identities=18% Similarity=0.317 Sum_probs=95.2
Q ss_pred ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeccCCCCCCeec-cEEEEEeeCC---CcEEEEEEEEcCCCC
Q 011161 13 AYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDEL---PVQIIVTIYDWDIIW 87 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~-e~f~f~i~~~---~~~L~i~v~d~d~~~ 87 (492)
.|.|.|+|..||+|+-+|. ....|.||.+.+.+...+|.+-.+++||.|| +.|.|++.+. ..+|.+++.|+|..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 3678999999999999986 4568999999999999999999999999998 6689998642 356999999999999
Q ss_pred CCceeEEEEEEcccC----------C--CcccEEEEccC----CCceEEEEEEee
Q 011161 88 KSTVLGSVIVTVESE----------G--QTGAVWYTLDS----PSGQVCLHIKTI 126 (492)
Q Consensus 88 ~dd~IG~~~i~l~~l----------~--~~~~~w~~L~~----~~G~i~l~l~~~ 126 (492)
.+|-||.+.|+++.+ + --...|+++.. -.|+|.+.+++.
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 999999999999976 1 12457999865 248887777644
No 120
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.61 E-value=3e-07 Score=98.04 Aligned_cols=114 Identities=14% Similarity=0.239 Sum_probs=86.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----Ceee-eeeccCCCCCCeec-cEEEEEeeCCCcE-EEEEEEEcC
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKR-FSSMVPGSRYPMWG-EEFNFSVDELPVQ-IIVTIYDWD 84 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~-~T~~~~~t~nP~W~-e~f~f~i~~~~~~-L~i~v~d~d 84 (492)
...|.|.|+.||+|+..+ -|...|||.|.+- ..++ +|.+..+++||+|+ |.|+|++.+|.-. |+|.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 457899999999998654 5567799999862 3344 45556888999999 9999999887654 999999999
Q ss_pred CCCCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEeeeC
Q 011161 85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTIKL 128 (492)
Q Consensus 85 ~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~~~~ 128 (492)
.++...|||++..|+..+..+ -+-++|..+ ...+.+-+...+.
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred ccCCcceeeeeecchhhhhcc-ceeeecccCchhhhhhhhheeeeEeccc
Confidence 999988999999999998443 344566441 2334555555543
No 121
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.36 E-value=1.2e-06 Score=92.59 Aligned_cols=121 Identities=25% Similarity=0.430 Sum_probs=87.7
Q ss_pred CCCCCCCceEEEEEE---------------EEeecCCCCCCCCCCCcEEEEEECCee----eeeeccCCCCCCeeccEEE
Q 011161 6 GDPQTNSAYLIKLEL---------------LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFN 66 (492)
Q Consensus 6 ~~~~~~~~~~L~V~V---------------i~a~~L~~~d~~g~sDPyv~v~~~~~~----~~T~~~~~t~nP~W~e~f~ 66 (492)
.|++++=.|.+++.+ +.++.+.+.. ++.+|||+.+...+.. .+|++.+.+.+|.|+|.|.
T Consensus 108 VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~ 186 (800)
T KOG2059|consen 108 VDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFY 186 (800)
T ss_pred cCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhhee
Confidence 466666666655443 3444444443 6679999999875443 4899999999999999999
Q ss_pred EEeeCC----------------CcEEEEEEEE-cCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-----------
Q 011161 67 FSVDEL----------------PVQIIVTIYD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS----------- 116 (492)
Q Consensus 67 f~i~~~----------------~~~L~i~v~d-~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~~----------- 116 (492)
|.+... ...|++.+|+ ++....++|+|++.+++..+ ......||.|.++.
T Consensus 187 f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~l 266 (800)
T KOG2059|consen 187 FEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDL 266 (800)
T ss_pred eeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCc
Confidence 987432 3458999999 66666799999999999987 34557899998721
Q ss_pred ceEEEEEEeee
Q 011161 117 GQVCLHIKTIK 127 (492)
Q Consensus 117 G~i~l~l~~~~ 127 (492)
|.+.+.+.+..
T Consensus 267 Gslrl~v~y~~ 277 (800)
T KOG2059|consen 267 GSLRLNVTYTE 277 (800)
T ss_pred cceeeeEEeee
Confidence 55566666553
No 122
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.19 E-value=9.7e-07 Score=96.51 Aligned_cols=94 Identities=22% Similarity=0.450 Sum_probs=82.0
Q ss_pred CCC-CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEc
Q 011161 8 PQT-NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDW 83 (492)
Q Consensus 8 ~~~-~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~ 83 (492)
++. +-..+++|++++|-+|.+.|.+|.+|||+.+.+++.. -+...+.+++||+|.+.|.+...-+ ...+.++|||+
T Consensus 606 ~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~ 685 (1105)
T KOG1326|consen 606 PKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDH 685 (1105)
T ss_pred cccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEe
Confidence 444 4467889999999999999999999999999998876 4778889999999999999887654 34589999999
Q ss_pred CCCCCCceeEEEEEEccc
Q 011161 84 DIIWKSTVLGSVIVTVES 101 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~ 101 (492)
|..+.|+.||+..++|..
T Consensus 686 D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 686 DLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred ecccccchhhceehhhhh
Confidence 999999999999999875
No 123
>PLN02352 phospholipase D epsilon
Probab=98.14 E-value=2e-05 Score=86.26 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=82.3
Q ss_pred CceEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCeee-eeeccCCCCCCeeccEEEEEeeCCC-cEEEEEEEEcC
Q 011161 12 SAYLIKLELLAAKNLIGA----NL-NGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWD 84 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~----d~-~g~sDPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~i~~~~-~~L~i~v~d~d 84 (492)
-.|+|.++|.+|+-+... +. ....||||.|.+++.+. || .+..||.|+|+|.+.+.... ..+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 368999999999844322 11 12239999999987654 77 55669999999999997766 679999977
Q ss_pred CCCCCceeEEEEEEcccC--CCc-ccEEEEccCCC-----c-eEEEEEEeeeCcc
Q 011161 85 IIWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLPV 130 (492)
Q Consensus 85 ~~~~dd~IG~~~i~l~~l--~~~-~~~w~~L~~~~-----G-~i~l~l~~~~~~~ 130 (492)
...+||.+.+|+.++ +.. .+.|+++.... | ++++++++.+...
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 257999999999998 323 78999986522 3 5666666665543
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.13 E-value=1.8e-06 Score=90.99 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=85.8
Q ss_pred cccCCCceeeeeecCCcceeEEeeeeeeec---ccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeeccccccc
Q 011161 158 VHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN 234 (492)
Q Consensus 158 ~~~k~~~f~~~F~lp~~e~l~~~~~c~l~~---~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~ 234 (492)
.+.++..| .+|+|| |.|..+..|.++. ....+|+||++.+++||.|...+ ...+++|+..|..|++.+....+
T Consensus 6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~ 81 (671)
T KOG4347|consen 6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLF 81 (671)
T ss_pred hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccc
Confidence 35577889 999999 9999999998877 45688999999999999998865 58999999999999999965556
Q ss_pred C-cEEEEEecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHH
Q 011161 235 P-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 279 (492)
Q Consensus 235 ~-~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 279 (492)
+ .|.+.|+ +...+.|..+..|+..+--+..
T Consensus 82 ~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~ 112 (671)
T KOG4347|consen 82 TQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHL 112 (671)
T ss_pred hhhhHHhhc---------------CcceEEecchhhHHHHHHHHhc
Confidence 6 6777775 4578999999999987664433
No 125
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.99 E-value=5.8e-06 Score=91.66 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=84.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEE-ee--CC-CcEEEEEEEEc
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VD--EL-PVQIIVTIYDW 83 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~-i~--~~-~~~L~i~v~d~ 83 (492)
+++|.|-|.-|++|+-..-+..+||||+.++. ..+++|+++++|.||.|||..... +. .. .++|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 56888999999999766657789999999984 235689999999999999998876 22 22 46799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
+....+.|+|.+.++|.++ ......||.|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 9988899999999999987 344458999965
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=7e-06 Score=80.15 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=78.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEcC
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD 84 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~d 84 (492)
..-+.|++++|..|...|.++.+||||..++. ..+.+|.+.+++++|.|++.|.+.+... ...+.|++||++
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~ 311 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYD 311 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccC
Confidence 34577999999999999999999999999874 2245799999999999999999988532 345899999999
Q ss_pred CCCCCceeEEEEEEcccCCCcccEEEE
Q 011161 85 IIWKSTVLGSVIVTVESEGQTGAVWYT 111 (492)
Q Consensus 85 ~~~~dd~IG~~~i~l~~l~~~~~~w~~ 111 (492)
.....+++|-+...+-..+.-...|+.
T Consensus 312 ~G~s~d~~GG~~~g~~rr~~v~~h~gr 338 (362)
T KOG1013|consen 312 IGKSNDSIGGSMLGGYRRGEVHKHWGR 338 (362)
T ss_pred CCcCccCCCcccccccccchhhcCccc
Confidence 887889999877766655444444543
No 127
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.54 E-value=0.00015 Score=61.93 Aligned_cols=97 Identities=20% Similarity=0.315 Sum_probs=72.8
Q ss_pred EEEEEEEeecCCCCC-------------CCCCCCcEEEEEE----CCeeeeeeccCCCCCCeeccEEEEEee--------
Q 011161 16 IKLELLAAKNLIGAN-------------LNGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD-------- 70 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d-------------~~g~sDPyv~v~~----~~~~~~T~~~~~t~nP~W~e~f~f~i~-------- 70 (492)
|.|.|++|.+|+... ..-.-++||.+.+ +++.++|+++.++-.|.|+..++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888887532 1223689999985 345678999999999999999999763
Q ss_pred C--------CCcEEEEEEEEcCCC----------CCCceeEEEEEEcccC---CCcccEEEEc
Q 011161 71 E--------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL 112 (492)
Q Consensus 71 ~--------~~~~L~i~v~d~d~~----------~~dd~IG~~~i~l~~l---~~~~~~w~~L 112 (492)
+ ....+.|+||+.+.- .+|-.||.+.||+.++ ..+...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 123489999997642 3466899999999998 5667889975
No 128
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.38 E-value=3.6e-05 Score=84.55 Aligned_cols=104 Identities=17% Similarity=0.214 Sum_probs=84.9
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEee----------CCCcEEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD----------ELPVQIIVTI 80 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~----------~~~~~L~i~v 80 (492)
...+.++++|.+|+.|...|..+.+|||+.+..-++.+.|.++.+++||.|+++..|.-. .....+.+++
T Consensus 203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~ 282 (1105)
T KOG1326|consen 203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV 282 (1105)
T ss_pred hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence 345667888899999999999999999999999999999999999999999999988521 1234488999
Q ss_pred EEcCCCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 011161 81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS 114 (492)
Q Consensus 81 ~d~d~~~~dd~IG~~~i~l~~l-~~~~~~w~~L~~ 114 (492)
||.++.+.++|+|.......-+ ....-.|+++-.
T Consensus 283 yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~r 317 (1105)
T KOG1326|consen 283 YDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTMR 317 (1105)
T ss_pred ehhhhhchHHhhcccccceEEEecCCccceEEeec
Confidence 9999999999999976554433 345667888754
No 129
>PF14470 bPH_3: Bacterial PH domain
Probab=97.24 E-value=0.0079 Score=49.17 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=66.5
Q ss_pred cCCcceeEEeeeeeeec-ccccceEEEEecCeeEEEecc-CCceeEEEEeccceeeEeecccccccCcEEEEEecCCCCC
Q 011161 171 LLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH 248 (492)
Q Consensus 171 lp~~e~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~-~g~~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~~~g~~~~ 248 (492)
|.++|.+.....|.+.. .....|-+.+|+.++-|.+.- ++......|||++|.+|+..+.. +...|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~------- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET------- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence 45789999988898764 334459999999999999865 67788899999999999999754 345788887
Q ss_pred CCCCCCCCCCceeEEEeeecchHHH
Q 011161 249 GVPPLGSPDGRVRYKFASFWNRNHA 273 (492)
Q Consensus 249 ~~~~~~~~~~~~~~~f~sf~~rd~~ 273 (492)
+.+++.|.++ ..+.+
T Consensus 73 ---------~~~~~~i~~i-~k~~~ 87 (96)
T PF14470_consen 73 ---------NGEKIKIDNI-QKGDV 87 (96)
T ss_pred ---------CCEEEEEEEc-CHHHH
Confidence 3468899888 55544
No 130
>PLN02964 phosphatidylserine decarboxylase
Probab=97.18 E-value=0.00062 Score=74.19 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=68.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEE-EEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCc
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYA-IITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv-~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd 90 (492)
.|.+.+++++|+ ++ ..|||. .+.++.+..+|.+.++|.||+||+...|.+... .....+.|||++++++++
T Consensus 53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 578889999987 33 258875 566788999999999999999999988887532 333699999999999999
Q ss_pred eeEEEEEEcccC
Q 011161 91 VLGSVIVTVESE 102 (492)
Q Consensus 91 ~IG~~~i~l~~l 102 (492)
.+|.+++++...
T Consensus 126 lv~~~e~~~t~f 137 (644)
T PLN02964 126 LVGYCELDLFDF 137 (644)
T ss_pred hhhheeecHhhc
Confidence 999999988766
No 131
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.00011 Score=72.09 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=74.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEc
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDW 83 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~ 83 (492)
...+.+++..|++|++++.++..|||+++.+.. .+.+|++..+++||.|+|+..... .+. ...+.+.+.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 346789999999999999999999999998742 235788999999999999877654 221 23377889999
Q ss_pred CCCCCCceeEEEEEEcccCCC
Q 011161 84 DIIWKSTVLGSVIVTVESEGQ 104 (492)
Q Consensus 84 d~~~~dd~IG~~~i~l~~l~~ 104 (492)
+.+..++++|+..+++..+.+
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred cccccccCcccchhhhhccCh
Confidence 999999999999988887743
No 132
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.05 E-value=0.00083 Score=70.59 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=67.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEC--C----eeeeeeccCCCCCCeeccEEEEEe-----eCCCcEEEEEEEEcCCCCC
Q 011161 20 LLAAKNLIGANLNGTSDPYAIITCG--S----EKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQIIVTIYDWDIIWK 88 (492)
Q Consensus 20 Vi~a~~L~~~d~~g~sDPyv~v~~~--~----~~~~T~~~~~t~nP~W~e~f~f~i-----~~~~~~L~i~v~d~d~~~~ 88 (492)
.++|++|.++|..+++|||..++-- . ...+|++++++++|.|.+ |.+.. .++...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3668999999999999999988732 1 234899999999999954 44433 3456779999999999999
Q ss_pred CceeEEEEEEcccCC
Q 011161 89 STVLGSVIVTVESEG 103 (492)
Q Consensus 89 dd~IG~~~i~l~~l~ 103 (492)
+++||++..++.++.
T Consensus 221 ~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQ 235 (529)
T ss_pred cCceeEecccHHHhc
Confidence 999999999998873
No 133
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=96.96 E-value=0.0015 Score=54.88 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=60.2
Q ss_pred eEEeeeeeeec-ccccceEEEEecCeeEEEec---------------cCCceeEEEEeccceeeEeecccccccC-cEEE
Q 011161 177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINP-AITI 239 (492)
Q Consensus 177 l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~---------------~~g~~~~~~i~~~~I~~i~k~~~~~~~~-~i~i 239 (492)
++-.+.|.+.. ....+|.+.++.+++.|..+ .-.......+|++||..|.+..-. +-+ ||+|
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyl-lr~~AlEi 80 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYL-LRDTALEI 80 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEET-TEEEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhc-CcceEEEE
Confidence 45678999877 56678999999999999976 223345678999999999987633 334 9999
Q ss_pred EEecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHH
Q 011161 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQL 277 (492)
Q Consensus 240 ~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l 277 (492)
.+.+| ...-+.|.+...||++|+.|
T Consensus 81 F~~dg-------------~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 81 FFSDG-------------RSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EETTS--------------EEEEE-SSHHHHHHHHCCS
T ss_pred EEcCC-------------cEEEEEcCCHHHHHHHHHhh
Confidence 99775 23344555667788887644
No 134
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0038 Score=65.96 Aligned_cols=101 Identities=17% Similarity=0.287 Sum_probs=77.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCCCCCCeeccEEEEEeeCC----CcEEEEEEE
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIY 81 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~t~nP~W~e~f~f~i~~~----~~~L~i~v~ 81 (492)
...++|.|+.|.+|+=.. .|.-.|||.+.+-+ .+..|++..++-.|.+||+|.|-+... .-.|.+.|-
T Consensus 1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 346889999999996543 67778999998632 233578888888999999999988542 234888887
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (492)
Q Consensus 82 d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~ 114 (492)
|+--...|..+|-+.++|.++ ...-..|++|..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 776555578999999999998 344568999975
No 135
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.00064 Score=67.80 Aligned_cols=103 Identities=14% Similarity=0.234 Sum_probs=81.9
Q ss_pred CceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEE-cC
Q 011161 12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD-WD 84 (492)
Q Consensus 12 ~~~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d-~d 84 (492)
..|.+.|.|++|++|..+.- ...++|||+|++-. .+.+|+...++.+|.+.....|.-..+...|.+++|. +.
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 46889999999999976643 34789999999732 2347888889999988888888766666779999994 66
Q ss_pred CCCCCceeEEEEEEcccCC---CcccEEEEccC
Q 011161 85 IIWKSTVLGSVIVTVESEG---QTGAVWYTLDS 114 (492)
Q Consensus 85 ~~~~dd~IG~~~i~l~~l~---~~~~~w~~L~~ 114 (492)
++.+..|+|-+++-+.+++ .....||+|.+
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 7777889999999999983 24578999976
No 136
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.86 E-value=0.0031 Score=66.43 Aligned_cols=153 Identities=12% Similarity=0.140 Sum_probs=97.6
Q ss_pred eeeeccCCCCCCeeccEEEEEee-CCCcEEEEEEEEcCCC----CCCceeEEEEEEcccCCCccc--EEEEccC----CC
Q 011161 48 RFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDII----WKSTVLGSVIVTVESEGQTGA--VWYTLDS----PS 116 (492)
Q Consensus 48 ~~T~~~~~t~nP~W~e~f~f~i~-~~~~~L~i~v~d~d~~----~~dd~IG~~~i~l~~l~~~~~--~w~~L~~----~~ 116 (492)
.+|+++.+.+||.|.+.|.+.+. +.-+.+++.++|.+.. ...+|+|++...+..+-.... .-+.+.+ ..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~ 122 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGS 122 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCc
Confidence 48999999999999999988764 3456799999997743 457899999999998722111 1122221 34
Q ss_pred ceEEEEEEeeeCccccccccccccchhhhhhccccCCCCcccccCCCceeeeeecC---------CcceeEEeeeeeeec
Q 011161 117 GQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLL---------PDEFVELSYSCVIER 187 (492)
Q Consensus 117 G~i~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~k~~~f~~~F~lp---------~~e~l~~~~~c~l~~ 187 (492)
|.|.++.+-. +..+....+...+ .++.++++..++.+|..+++.- ..|.+....+..|..
T Consensus 123 g~iti~aee~----~~~~~~~~~~~~~-------~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~ 191 (529)
T KOG1327|consen 123 GTITISAEED----ESDNDVVQFSFRA-------KNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP 191 (529)
T ss_pred ccEEEEeecc----cccCceeeeeeee-------eecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc
Confidence 5554444322 2222222222221 4567889999999998888653 445777777777766
Q ss_pred -ccccc----eEEEEecCeeEEEeccCCc
Q 011161 188 -SFLYH----GRMYVSAWHICFHSNAFSR 211 (492)
Q Consensus 188 -~~~~~----G~lyis~~~~cF~s~~~g~ 211 (492)
.++.+ +..-.+...+|++.+..|.
T Consensus 192 ~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 192 FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 55544 3334555577777665553
No 137
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.83 E-value=0.0016 Score=51.91 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=64.5
Q ss_pred EEEEEEeecCCCCCCC-CCCCcEEE--EEECCe-eeeeeccCCCCCCeeccEEEEEee--C-CCcEEEEEEEEcCCCCCC
Q 011161 17 KLELLAAKNLIGANLN-GTSDPYAI--ITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD--E-LPVQIIVTIYDWDIIWKS 89 (492)
Q Consensus 17 ~V~Vi~a~~L~~~d~~-g~sDPyv~--v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~--~-~~~~L~i~v~d~d~~~~d 89 (492)
-++++.|++|.-...- ....-|++ +.+.+. ..+|....+..||.|.|+|.|.+. . ....|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 4788999998543321 12223443 334443 458888888999999999999874 2 24568899988 44567
Q ss_pred ceeEEEEEEcccCC-CcccEEEE
Q 011161 90 TVLGSVIVTVESEG-QTGAVWYT 111 (492)
Q Consensus 90 d~IG~~~i~l~~l~-~~~~~w~~ 111 (492)
+.||.+.+.+++++ +....|.+
T Consensus 80 e~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHHHhhhhhc
Confidence 89999999999995 34556754
No 138
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.32 E-value=0.021 Score=57.88 Aligned_cols=113 Identities=10% Similarity=0.123 Sum_probs=78.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE---C--CeeeeeeccCCCCCCeeccEEEEEeeCC---C---------cEE
Q 011161 14 YLIKLELLAAKNLIGANLNGTSDPYAIITC---G--SEKRFSSMVPGSRYPMWGEEFNFSVDEL---P---------VQI 76 (492)
Q Consensus 14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~---~--~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~---------~~L 76 (492)
-.|.+.|+++++++.....--.|-|+.+.. . .++.+|.+++++.+|.|+|.|.+.+... . .-+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 356677888888765432223567887764 2 2345789999999999999999988541 1 128
Q ss_pred EEEEEEcCCCC-CCceeEEEEEEcccCCC--cccEEEEccC----CCceEEEEEEee
Q 011161 77 IVTIYDWDIIW-KSTVLGSVIVTVESEGQ--TGAVWYTLDS----PSGQVCLHIKTI 126 (492)
Q Consensus 77 ~i~v~d~d~~~-~dd~IG~~~i~l~~l~~--~~~~w~~L~~----~~G~i~l~l~~~ 126 (492)
+|++|+...+. +|.++|.+.+.+..+.. .....++|.. -.|.+.+.+++.
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 99999987654 48899999999998832 2345667654 136666666554
No 139
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.99 E-value=0.065 Score=59.09 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCC-CCCCeeccE-EEEEe-eCC-CcEEEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPG-SRYPMWGEE-FNFSV-DEL-PVQIIVT 79 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~-t~nP~W~e~-f~f~i-~~~-~~~L~i~ 79 (492)
.=.+++.|+||+|+-|..+. ...||.|.+-+ ...+|+++.+ +.||+|+|. |.|.- .-+ -..|+|.
T Consensus 700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 33678999999999997665 45899998621 3357888754 699999865 77752 222 3459999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (492)
Q Consensus 80 v~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (492)
||+.. ..|||+-.+|++.+..+ .+.+.|..+.++
T Consensus 776 vyeEg----gK~ig~RIlpvd~l~~G-Yrhv~LRse~Nq 809 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVDGLNAG-YRHVCLRSESNQ 809 (1189)
T ss_pred eeccC----CceeeeeccchhcccCc-ceeEEecCCCCC
Confidence 99865 36999999999999654 556677664443
No 140
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.78 E-value=0.98 Score=40.50 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=65.9
Q ss_pred CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEE--ECCeeeeeeccCCCCCCeeccEEEEEeeCC--------------
Q 011161 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIIT--CGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-------------- 72 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~--~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-------------- 72 (492)
+....|.+.|..++-...--. .+..+..+.++ +.+++++|+.+..+.+|.|+|.|.|+++..
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 445678899988864322111 14455555554 578999999999999999999999998532
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 011161 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (492)
Q Consensus 73 ~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l 102 (492)
...+++.|...|..+...++|.-.++...+
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 234788887777766667888888877766
No 141
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.76 E-value=1.1 Score=40.57 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=65.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeee----eeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcC
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d 84 (492)
.++|+|+++.++...+ .+|-||.+.+ ++... .|..+.. .++.|||...|.+ .+. ...|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5789999999886543 4678887754 43322 3443433 6799999998876 333 346999999976
Q ss_pred CCC----CCceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEe
Q 011161 85 IIW----KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKT 125 (492)
Q Consensus 85 ~~~----~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~~ 125 (492)
... ....||.+.++|-+... .| +.|...+.+..
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~------~L--r~G~~~L~lW~ 121 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD------TL--VSGKMALNLWP 121 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC------hh--hCCCEEEEEEc
Confidence 421 23569999999887532 12 35766666654
No 142
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.61 E-value=0.54 Score=43.15 Aligned_cols=101 Identities=23% Similarity=0.249 Sum_probs=65.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcC
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d 84 (492)
.++|+|+.+.+|... ....+-||.+.+ ++.. ..|+.+..+.++.|+|.+.|.+ .+. ...|.|+||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 578999999999752 234566776543 4432 2455555456799999999976 343 345999999965
Q ss_pred CCC----------------CCceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEe
Q 011161 85 IIW----------------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKT 125 (492)
Q Consensus 85 ~~~----------------~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~~ 125 (492)
... ....||.+.++|-+... .| +.|...+.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~------~L--r~G~~~L~lW~ 135 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG------QL--KTGDHTLYMWT 135 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcccc------hh--hcCCeEEEecC
Confidence 322 24678888888877532 12 35666666653
No 143
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=93.57 E-value=1.1 Score=45.52 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=82.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--------CCcEEEEEEEEcC-CC
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II 86 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--------~~~~L~i~v~d~d-~~ 86 (492)
+.|.|++|+|.+... ...-.+...+++....|..+..+-.|.|+..+..+++. ...+|++++|..| ..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 568899999987652 23445667789999999998889999999998887641 2456999999988 55
Q ss_pred CCCceeEEEEEEcccC---C----CcccEEEEccCC-------CceEEEEEEeeeC
Q 011161 87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKL 128 (492)
Q Consensus 87 ~~dd~IG~~~i~l~~l---~----~~~~~w~~L~~~-------~G~i~l~l~~~~~ 128 (492)
+..+.||.+-++|... . .....||+|..- +-++.+.+.+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 6678999999999876 2 245689999662 2345566655543
No 144
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.18 E-value=1.2 Score=35.98 Aligned_cols=83 Identities=12% Similarity=0.242 Sum_probs=56.8
Q ss_pred CCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 011161 35 SDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (492)
Q Consensus 35 sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~ 113 (492)
++-.+++.+++.. .+|.-... .+..|++.|.++++. .++|+|.||-.|.- ..-|-..+.|.+... ..-.+|.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~R---slCav~~lrLEd~~~--~~~~~le 81 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDWR---SLCAVKFLKLEDERH--EVQLDME 81 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecch---hhhhheeeEhhhhcc--cceeccc
Confidence 6777888887744 45655433 578999999999975 77899999977642 345666677776422 3445565
Q ss_pred CCCceEEEEEEe
Q 011161 114 SPSGQVCLHIKT 125 (492)
Q Consensus 114 ~~~G~i~l~l~~ 125 (492)
+ .|.+...+++
T Consensus 82 p-qg~l~~ev~f 92 (98)
T cd08687 82 P-QLCLVAELTF 92 (98)
T ss_pred c-ccEEEEEEEe
Confidence 5 6777777665
No 145
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.59 E-value=0.29 Score=48.14 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=73.8
Q ss_pred CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC
Q 011161 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~ 87 (492)
...|.|.++++.+++|+-... +-..+-||++..+.+. .||.+.....--.|.|+|...+.. ...+.+-||.|+.-.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 456889999999999975443 4457889999887543 466665555666889999988764 456888899998765
Q ss_pred CCceeEEEEEEcccC-CCccc--EEEEccCCCceEEEEEEee
Q 011161 88 KSTVLGSVIVTVESE-GQTGA--VWYTLDSPSGQVCLHIKTI 126 (492)
Q Consensus 88 ~dd~IG~~~i~l~~l-~~~~~--~w~~L~~~~G~i~l~l~~~ 126 (492)
++.+.-..-+.+..+ ....+ .-..|++ .|++-+++.+.
T Consensus 127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~~~ 167 (442)
T KOG1452|consen 127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLPLA 167 (442)
T ss_pred hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecccC
Confidence 554322222333322 22223 3344554 68887777644
No 146
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.35 E-value=0.97 Score=40.54 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=57.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcC
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d 84 (492)
.++|.+....++...+ ....+-||.+.+ ++.. ..|.......++.|||...|.+ .+. ...|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677777777765421 233556666653 4331 2343333346899999999976 333 345999999977
Q ss_pred CCC--CCceeEEEEEEcccCC
Q 011161 85 IIW--KSTVLGSVIVTVESEG 103 (492)
Q Consensus 85 ~~~--~dd~IG~~~i~l~~l~ 103 (492)
..+ .+..||.+.++|-+..
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCCCCcceEEEEEeEEeEccc
Confidence 554 4679999999988763
No 147
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.97 E-value=0.82 Score=41.34 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=56.8
Q ss_pred CCCCcEEEEEE--CCee----eeeeccCCCCCCeeccEEEEEee--CC--CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 011161 33 GTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (492)
Q Consensus 33 g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~i~--~~--~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l 102 (492)
..+|-||.+.+ ++.. ..|..+.-+..+.|||...|.+. +. ...|.|+||+.+..++...||.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34777877764 3332 24555555667899999988863 33 345999999987666678999999998876
Q ss_pred CCcccEEEEccCCCceEEEEEE
Q 011161 103 GQTGAVWYTLDSPSGQVCLHIK 124 (492)
Q Consensus 103 ~~~~~~w~~L~~~~G~i~l~l~ 124 (492)
.. .| +.|...+.+.
T Consensus 108 ~g------~L--r~G~~~l~lw 121 (159)
T cd08397 108 DG------TL--RRGRQKLRVW 121 (159)
T ss_pred CC------cE--ecCCEEEEEE
Confidence 32 12 3466556554
No 148
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=90.81 E-value=0.75 Score=38.43 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=61.7
Q ss_pred ceeEEeeeeeeec-ccccceEEEEecCeeEEEecc----CC-c---------eeEEEEeccceeeEeecccccccCcEEE
Q 011161 175 EFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----FS-R---------QMKVIIPIGDIDEIQRSQHAFINPAITI 239 (492)
Q Consensus 175 e~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~----~g-~---------~~~~~i~~~~I~~i~k~~~~~~~~~i~i 239 (492)
|.++-+..|.+.. -....|++-||..++.|.... +. . .....+++++|.+|-+..-.+=.-|++|
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi 80 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL 80 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence 3567778888877 555679999999999999631 21 1 1133789999999988764322339999
Q ss_pred EEecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHH
Q 011161 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 279 (492)
Q Consensus 240 ~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 279 (492)
...+| .-+|-+|-+++.+-+.+..
T Consensus 81 F~~d~----------------~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 81 FLASR----------------TSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EEeCC----------------ceEEEEeCcHHHHHHHHhh
Confidence 98642 4467778877776666543
No 149
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.58 E-value=5.6 Score=36.60 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=59.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee---eeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcCC
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK---RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWDI 85 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~---~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d~ 85 (492)
.++|+|..+.++ ..+......-||.+.+ ++.. .+|.....+.+|.|||...|.+ .+. ...|.|+||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 467777777643 2222222334555433 3332 2555555567899999988876 343 3569999999642
Q ss_pred CC----------------CCceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEeee
Q 011161 86 IW----------------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIK 127 (492)
Q Consensus 86 ~~----------------~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~~~~ 127 (492)
.. .+..||-+.+.|-+... .| +.|...+.+.-.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~------~L--r~G~~~L~~W~~~ 139 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF------LL--RTGEYVLHMWQIS 139 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC------ce--ecCCEEEEEecCC
Confidence 21 13456666666655422 12 4577777766544
No 150
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.91 E-value=2.2 Score=38.98 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=67.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeee----eeeccC--C--CCCCeeccEEEEEee--CC--CcEEEE
Q 011161 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP--G--SRYPMWGEEFNFSVD--EL--PVQIIV 78 (492)
Q Consensus 13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~~----~T~~~~--~--t~nP~W~e~f~f~i~--~~--~~~L~i 78 (492)
...+.|+|.++.+++..-.....|-|+.+.+ +++.. .|+... + ...+.|||...|.+. +. ...|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3467899999999987654446788887764 43322 333221 1 235779999888763 33 345999
Q ss_pred EEEEcCCCC---------CCceeEEEEEEcccCCCcccEEEEccCCCceEEEEEE
Q 011161 79 TIYDWDIIW---------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124 (492)
Q Consensus 79 ~v~d~d~~~---------~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~ 124 (492)
+||+..... .+..||.+.++|-+... .| +.|...+.+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~------~L--~~G~~~L~lW 133 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG------VL--RQGSLLLGLW 133 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcchh------hh--ccCCEEEEec
Confidence 999976543 35689999998877632 12 3466666654
No 151
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=88.20 E-value=17 Score=31.69 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=67.8
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeeecc-CCCCCCeeccEEEEEee----C-----CCcEEE
Q 011161 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMV-PGSRYPMWGEEFNFSVD----E-----LPVQII 77 (492)
Q Consensus 11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~---~~T~~~-~~t~nP~W~e~f~f~i~----~-----~~~~L~ 77 (492)
.....+.|.|.+..+++. .....||....+... ..|... ..+-.-.|++.|.+.+. . ....+.
T Consensus 4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 345678899999998876 223344555444432 333333 23445799999988752 1 123488
Q ss_pred EEEEEcCCCCCCceeEEEEEEcccCCC----cccEEEEccCC-C--ceEEEEEEeee
Q 011161 78 VTIYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSP-S--GQVCLHIKTIK 127 (492)
Q Consensus 78 i~v~d~d~~~~dd~IG~~~i~l~~l~~----~~~~w~~L~~~-~--G~i~l~l~~~~ 127 (492)
|.|+....-++...+|.+.+.|.+... ....-++|... . ..+.+.|.+..
T Consensus 80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 999887533333689999999999832 23445666542 2 33455554443
No 152
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=87.37 E-value=15 Score=37.17 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=75.2
Q ss_pred eeecCCcceeEEeeeeeeec--ccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccCcEEEEEecCC
Q 011161 168 IFNLLPDEFVELSYSCVIER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGA 245 (492)
Q Consensus 168 ~F~lp~~e~l~~~~~c~l~~--~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~~~g~ 245 (492)
...|-+.|.+.....-.|.- +.---|.+++|+-++.+|+.. .-.-.++||+=+|.+|....+ .+.+|+.|.|....
T Consensus 148 ~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~-ne~fNVSiPylqi~~i~ir~S-KfG~aLVieT~~~s 225 (339)
T PF07289_consen 148 QLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADM-NESFNVSIPYLQIKSIRIRDS-KFGPALVIETSESS 225 (339)
T ss_pred eEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccC-CccccccchHhhheeeeeecc-ccceEEEEEEeccC
Confidence 34577889999999888755 222229999999999999976 336689999999999998876 56789999887532
Q ss_pred CCCCCCCCCCCCCceeEEEeeecch----HHHHHHHHHHHHhhh
Q 011161 246 GGHGVPPLGSPDGRVRYKFASFWNR----NHALRQLQRTAKNYH 285 (492)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~f~sf~~r----d~~~~~l~~~~~~~~ 285 (492)
| .|...==++. ++.|+-|..||+...
T Consensus 226 G--------------gYVLGFRvDP~ErL~~l~KEi~sLh~vy~ 255 (339)
T PF07289_consen 226 G--------------GYVLGFRVDPEERLQELFKEIQSLHKVYS 255 (339)
T ss_pred C--------------cEEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 2 4544433442 577888888888764
No 153
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=87.33 E-value=4 Score=33.03 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=29.9
Q ss_pred ceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccc
Q 011161 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA 231 (492)
Q Consensus 192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~ 231 (492)
.|++|+|.++++|.-..-.....+.||+++|..++.....
T Consensus 37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf 76 (89)
T PF11605_consen 37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGF 76 (89)
T ss_dssp CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-ST
T ss_pred CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEccc
Confidence 3999999999999755433344789999999999665543
No 154
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=86.80 E-value=6.8 Score=33.19 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=53.6
Q ss_pred ccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccc--cccCcEEEEEecCCCCCCCCCCCCCCCceeEEEe
Q 011161 188 SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA--FINPAITIILRMGAGGHGVPPLGSPDGRVRYKFA 265 (492)
Q Consensus 188 ~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~--~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~ 265 (492)
.+.-+|++.|-.+-+=||.+.- .+-=+.|||++|+.|...-.. ...|...|.|+++ -+|.|+
T Consensus 20 g~~~yGkimiGDkaFEFyn~~n-~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~~---------------G~f~Fs 83 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDRN-VEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKKN---------------GKFTFS 83 (118)
T ss_pred cccccCeEEEcccceEeecCCC-hhhcEEeChhheeEEEEEEEECCCEEeeEEEEECCC---------------CEEEEE
Confidence 4557799999999999987542 244578999999999987652 4567789999752 388888
Q ss_pred eecchHHHHHHHHHH
Q 011161 266 SFWNRNHALRQLQRT 280 (492)
Q Consensus 266 sf~~rd~~~~~l~~~ 280 (492)
+=- .-.+++.++..
T Consensus 84 skd-~k~~Lk~~r~y 97 (118)
T PF06115_consen 84 SKD-SKKVLKAIRKY 97 (118)
T ss_pred ECC-hHHHHHHHHHh
Confidence 732 23455555443
No 155
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=86.18 E-value=4.7 Score=31.86 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=37.2
Q ss_pred eEEEEecCe--eEEEeccCCceeEEEEeccceeeEeecccccccC--cEEEEEecC
Q 011161 193 GRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRMG 244 (492)
Q Consensus 193 G~lyis~~~--~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~--~i~i~~~~g 244 (492)
|.||+++.+ +-+-..--+....+.||+.+|+..+-.+.. .| -+.|+.+.+
T Consensus 14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~--s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG--SPKVMLKIVLKDD 67 (79)
T ss_dssp EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT--SSTEEEEEEETTS
T ss_pred cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC--CcceEEEEEEecC
Confidence 999999999 888876444344799999999999988754 34 577877653
No 156
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.85 E-value=8.2 Score=33.93 Aligned_cols=55 Identities=31% Similarity=0.392 Sum_probs=39.6
Q ss_pred eeeccCCC-CCCeeccEEEEEee--CC--CcEEEEEEEEcCCCCCC----ceeEEEEEEcccCC
Q 011161 49 FSSMVPGS-RYPMWGEEFNFSVD--EL--PVQIIVTIYDWDIIWKS----TVLGSVIVTVESEG 103 (492)
Q Consensus 49 ~T~~~~~t-~nP~W~e~f~f~i~--~~--~~~L~i~v~d~d~~~~d----d~IG~~~i~l~~l~ 103 (492)
.|....-+ .++.|+|.+.|.+. +. ...|.|+||..+..... ..||.+.++|-+..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 45545444 78999999999863 32 45699999998766555 69999999988773
No 157
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=83.94 E-value=5.5 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=30.0
Q ss_pred eEEEEecCeeEEEeccCCceeEEEEeccceeeEee
Q 011161 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227 (492)
Q Consensus 193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k 227 (492)
|++++|+-++.+||..- ....++|||..|.+++.
T Consensus 21 G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~~ 54 (55)
T smart00683 21 GVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVRV 54 (55)
T ss_pred eEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEEe
Confidence 99999999999999874 47789999999998863
No 158
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.70 E-value=5.4 Score=36.80 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=33.4
Q ss_pred eeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCCCC---CceeEEEEEEccc
Q 011161 48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK---STVLGSVIVTVES 101 (492)
Q Consensus 48 ~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~~~---dd~IG~~~i~l~~ 101 (492)
..|.+...+.+|.|+|+|.++++. ...+|.|++++...-.+ ...+|.+.++|.+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 357777888999999999999853 24569999998653222 2689999999988
No 159
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=81.56 E-value=4.1 Score=44.47 Aligned_cols=82 Identities=13% Similarity=0.268 Sum_probs=58.8
Q ss_pred eeeeeecccccceEEEEe----cCeeEEEeccC------------CceeEEEEeccceeeEeeccccc------------
Q 011161 181 YSCVIERSFLYHGRMYVS----AWHICFHSNAF------------SRQMKVIIPIGDIDEIQRSQHAF------------ 232 (492)
Q Consensus 181 ~~c~l~~~~~~~G~lyis----~~~~cF~s~~~------------g~~~~~~i~~~~I~~i~k~~~~~------------ 232 (492)
|.|-|..+ .|.+||+ .=.++|.+.-. .....+.||+.||.++.|..+.+
T Consensus 521 F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~g 597 (642)
T PF11696_consen 521 FPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWALG 597 (642)
T ss_pred eeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeecC
Confidence 56666553 3899998 44678876411 12445899999999999987653
Q ss_pred ---ccCcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHHH
Q 011161 233 ---INPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280 (492)
Q Consensus 233 ---~~~~i~i~-~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~ 280 (492)
+..+++|+ ++. .+.|.++....||+.|+.|..+
T Consensus 598 ~kEv~DGL~I~g~~~---------------g~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 598 EKEVVDGLVIVGDEP---------------GQEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred CcccccceEEeccCC---------------CCEEEEEecchHHHHHHHHHhc
Confidence 12356666 443 3589999999999999998765
No 160
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=80.09 E-value=19 Score=32.78 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=57.1
Q ss_pred CCCcEEEEEECCeee-eeeccCC--CCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCc-----
Q 011161 34 TSDPYAIITCGSEKR-FSSMVPG--SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQT----- 105 (492)
Q Consensus 34 ~sDPyv~v~~~~~~~-~T~~~~~--t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l~~~----- 105 (492)
...-|+++.++++.. +|+...- ...-.|++.|.+.+...+..|.+.||.... ..+..|+.+.+++-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~ 114 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDN 114 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccC
Confidence 456788998877554 5555433 233466899999998888899999999876 5778999999998766322
Q ss_pred -ccEEEEccC
Q 011161 106 -GAVWYTLDS 114 (492)
Q Consensus 106 -~~~w~~L~~ 114 (492)
...|+.+.+
T Consensus 115 ~~~~~~eFsS 124 (168)
T PF15625_consen 115 VPLEEYEFSS 124 (168)
T ss_pred CceEeEEEcC
Confidence 445655543
No 161
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=76.86 E-value=15 Score=30.19 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=43.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcCC
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWDI 85 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d~ 85 (492)
+.+.+....++........++-||.+.+ ++.. ..|..+.-...+.|||...|.+ .+. ...|.|++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4456666666644332223578887764 4332 2455444456689999988876 333 3459999998653
No 162
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=73.90 E-value=24 Score=32.78 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=39.3
Q ss_pred eeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCCCC--CceeEEEEEEcccC
Q 011161 48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK--STVLGSVIVTVESE 102 (492)
Q Consensus 48 ~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~~~--dd~IG~~~i~l~~l 102 (492)
.+|-+...+.+|.|+|++.+.++. ...+|.|++++.....+ ...+|-+.++|-+-
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~ 114 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMRE 114 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeeccc
Confidence 478888888999999999998853 35669998887432211 25678877777543
No 163
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.44 E-value=21 Score=33.26 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=39.5
Q ss_pred eeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCC----CCCceeEEEEEEccc
Q 011161 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII----WKSTVLGSVIVTVES 101 (492)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~----~~dd~IG~~~i~l~~ 101 (492)
..+|-+.+.+.+|.|+|++.+.++. ...+|.|++++.... .....+|-+.++|-.
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~ 115 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ 115 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence 3467777888999999999998852 356799999874321 123468888888763
No 164
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=69.48 E-value=17 Score=33.56 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=40.1
Q ss_pred eeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCCC------CCceeEEEEEEccc
Q 011161 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIW------KSTVLGSVIVTVES 101 (492)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~~------~dd~IG~~~i~l~~ 101 (492)
...|.+...+.+|.|++++.+.++. ...+|.|++++..--. ....+|.+.+||.+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 3468888889999999999998853 2456999999844221 13467888777765
No 165
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=68.96 E-value=12 Score=34.24 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=38.3
Q ss_pred eeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCC-----CCCceeEEEEEEccc
Q 011161 50 SSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-----WKSTVLGSVIVTVES 101 (492)
Q Consensus 50 T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~-----~~dd~IG~~~i~l~~ 101 (492)
+.++..+.+|.|++++.+.++. +..+|.|++++...- .....+|.+.+||.+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4455445899999999999853 355699999986522 235678998888876
No 166
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=66.85 E-value=34 Score=34.66 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=60.2
Q ss_pred ceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccc-cc---cCcEEEEEecCCCCCCCCCCCCCCCceeEEEeee
Q 011161 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FI---NPAITIILRMGAGGHGVPPLGSPDGRVRYKFASF 267 (492)
Q Consensus 192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~-~~---~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~sf 267 (492)
.|+|++|+-++.++|...- ...+.|=|.-|..|+-.... .+ ..++-|.++-+ ..+..|+|+..
T Consensus 42 ~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~------------~~rfEFiFt~~ 108 (339)
T PF07289_consen 42 RGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN------------NTRFEFIFTNL 108 (339)
T ss_pred eeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC------------CceEEEEeccC
Confidence 3999999999999997533 57888999999888876532 12 23888888643 25677888876
Q ss_pred cchH---HHHHHHHHHHHhhh
Q 011161 268 WNRN---HALRQLQRTAKNYH 285 (492)
Q Consensus 268 ~~rd---~~~~~l~~~~~~~~ 285 (492)
.... ..|..+..+|+.+.
T Consensus 109 ~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 109 SPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred CCCCccchHHHHHHHHHHHHH
Confidence 5432 46999999999874
No 167
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=66.36 E-value=81 Score=26.71 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=40.6
Q ss_pred CCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeccceeehheehhHHHhHHHHHHHHHHHHHHHH
Q 011161 404 GSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 469 (492)
Q Consensus 404 gd~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~~~~~~~~~~~~~~~~~~~~ 469 (492)
+........|.|+.. +++|+|... ..+.+.. .++.+.........++.....++.+++.+
T Consensus 84 ~~~~~~~~~~~l~~~-~~gT~v~~~---~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 84 AGFVKGTARVTLEPD-GGGTRLTYT---ADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred CceEEEEEEEEEEec-CCcEEEEEE---EEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556789999999998 678999999 8888654 34555444444455555555555555543
No 168
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.26 E-value=2.4 Score=46.30 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCCCCcEEEEEECCeee-eeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCccc
Q 011161 32 NGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQTGA 107 (492)
Q Consensus 32 ~g~sDPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l---~~~~~ 107 (492)
....+||+-|.+..... .+.+.+.+..|.|+++|.+.+.. ...+.|.++.......+.+...+.+...++ .....
T Consensus 25 ~~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 25 LQALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 34568998888764433 45556778999999999999654 677888898866444444444444433333 23456
Q ss_pred EEEEccCCCceEEEEEEeee
Q 011161 108 VWYTLDSPSGQVCLHIKTIK 127 (492)
Q Consensus 108 ~w~~L~~~~G~i~l~l~~~~ 127 (492)
.|..+.+ .|.+...+.+..
T Consensus 104 ~w~~~~~-~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 104 LWVLIEE-LGTLLKPAALTG 122 (694)
T ss_pred hcccccc-ccceeeeecccC
Confidence 7988876 688777766554
No 169
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=63.74 E-value=1.2e+02 Score=27.86 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=53.7
Q ss_pred cCCCCeEEEEEEEecCCCCC-CCeE---EEEEEEEEEeeCCCceEEEEEEeeeeEEEeccceeehheehhHHHhHHHHHH
Q 011161 384 SPDKKIFVFETVQQAHDVPF-GSYF---EIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE 459 (492)
Q Consensus 384 ~~~~~~~vi~~~~~~~dVPy-gd~F---~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~~~~~~~~~~ 459 (492)
..++..+++......+..|- ..+- ...+.|+|+..+++.|++... ..++..++. =+.++...+.....+.++
T Consensus 119 ~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~---~~~D~~G~i-P~~lvn~~~~~~~~~~~~ 194 (206)
T smart00234 119 LVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWV---SHADLKGWL-PHWLVRSLIKSGLAEFAK 194 (206)
T ss_pred cCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEE---EEEecCCCc-cceeehhhhhhhHHHHHH
Confidence 34444444444555566663 3433 456889999999889999999 999998863 355666666666666666
Q ss_pred HHHHHHHHH
Q 011161 460 LMLETARSY 468 (492)
Q Consensus 460 ~~~~~~~~~ 468 (492)
.|.+.+++.
T Consensus 195 ~~~~~~~~~ 203 (206)
T smart00234 195 TWVATLQKH 203 (206)
T ss_pred HHHHHHHHH
Confidence 666655554
No 170
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=63.73 E-value=26 Score=32.47 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=39.4
Q ss_pred eeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCC--C-------CCceeEEEEEEccc
Q 011161 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII--W-------KSTVLGSVIVTVES 101 (492)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~--~-------~dd~IG~~~i~l~~ 101 (492)
...|.+...+.+|.|.|++.+.+.. ...+|.|++|+..-. . ....+|.+.+||..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3468888889999999999998752 345699999986511 1 13457777777665
No 171
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.62 E-value=13 Score=31.02 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=50.1
Q ss_pred cceEEEEecCeeEEEeccCCceeEEEEeccceeeEeeccccc-ccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeecc
Q 011161 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF-INPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 269 (492)
Q Consensus 191 ~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~-~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~ 269 (492)
-.|++-|-..-+-||-+. ..+.-+.|||++|..|-..-+.. +.|-..|.|.. +-+|.|+|=-+
T Consensus 23 ~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~---------------~gk~~FaSkds 86 (122)
T COG4687 23 EYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDT---------------QGKVRFASKDS 86 (122)
T ss_pred hcCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcceEEEEEcC---------------CceEEEEeCCc
Confidence 458888887777887654 23556789999999887766544 78888888863 34999998433
Q ss_pred hHHHHHHHHHH
Q 011161 270 RNHALRQLQRT 280 (492)
Q Consensus 270 rd~~~~~l~~~ 280 (492)
...++.+.+.
T Consensus 87 -g~iLk~ir~y 96 (122)
T COG4687 87 -GKILKKIREY 96 (122)
T ss_pred -hhHHHHHHHH
Confidence 3444444443
No 172
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=63.12 E-value=1.2e+02 Score=27.65 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=41.6
Q ss_pred CeEEEEEEEecCCCCCC-C---eEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeccceeehheehhHHHhHH
Q 011161 388 KIFVFETVQQAHDVPFG-S---YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK 455 (492)
Q Consensus 388 ~~~vi~~~~~~~dVPyg-d---~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~~~~~~ 455 (492)
..++|......+++|-. + -+.....|.|+..++++|+|... ..+++.+ .+-+.+|.+.+.....
T Consensus 117 ~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~---~~~dp~g-~iP~~lv~~~~~~~~~ 184 (195)
T cd08876 117 GSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQ---AYADPGG-SIPGWLANAFAKDAPY 184 (195)
T ss_pred CEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEE---EEeCCCC-CCCHHHHHHHHHHHHH
Confidence 35555544333335533 2 35677889999999999999999 8888854 4556666555444333
No 173
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.18 E-value=28 Score=37.66 Aligned_cols=102 Identities=23% Similarity=0.359 Sum_probs=70.0
Q ss_pred ceeeeeecCCccee-EEeeeeeeecccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeeccccc-ccC--cEEE
Q 011161 164 PLQTIFNLLPDEFV-ELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF-INP--AITI 239 (492)
Q Consensus 164 ~f~~~F~lp~~e~l-~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~-~~~--~i~i 239 (492)
.+...|.+-++|.+ -..|-|-+.. ..-|.|++|+-+|.|.+.--+..--+-+||.=|..|+|..++. .-| .|+|
T Consensus 29 ~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i 106 (717)
T KOG4471|consen 29 NLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEI 106 (717)
T ss_pred cccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEE
Confidence 35566655555544 4446666655 6679999999999999877666667889999999999987543 223 6888
Q ss_pred EEecCCCCCCCCCCCCCCCceeEEEeeecc-hHHHHHHHHHH
Q 011161 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWN-RNHALRQLQRT 280 (492)
Q Consensus 240 ~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~-rd~~~~~l~~~ 280 (492)
+.++- ...+|-|..+.. |-+.++.|.+.
T Consensus 107 ~CKDm-------------r~lR~~fk~~~q~r~~~~e~L~~~ 135 (717)
T KOG4471|consen 107 TCKDM-------------RNLRCAFKQEEQCRRDWFERLNRA 135 (717)
T ss_pred Eeccc-------------cceeeecCcccccHHHHHHHHHHh
Confidence 87652 345777777665 33555555443
No 174
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=61.19 E-value=1.5e+02 Score=27.98 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=37.0
Q ss_pred CCeEEEEEEEecCCCCCCCe-EE---EEEEEEEEeeCCCceEEEEEEeeeeEEEeccc
Q 011161 387 KKIFVFETVQQAHDVPFGSY-FE---IHGRWHLETIAENSSTIDIKVVSAGAHFKKWC 440 (492)
Q Consensus 387 ~~~~vi~~~~~~~dVPygd~-F~---v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t 440 (492)
+..+++......+++|-..- -+ ....|.|+..++++|++... +.++..++.
T Consensus 122 ~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~---~~~Dp~G~I 176 (222)
T cd08871 122 GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYV---TQNDPKGSL 176 (222)
T ss_pred CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEE---EecCCCCCc
Confidence 34556666666678886654 22 34568999988889999999 889988853
No 175
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=58.87 E-value=1.2e+02 Score=28.66 Aligned_cols=82 Identities=6% Similarity=0.011 Sum_probs=56.6
Q ss_pred eEEEEEEEecCCCCCCCceeEeEEEEEE--ecCCCCeEEEEEEEecCCCCCCC---eEEEEEEEEEEeeCCCceEEEEEE
Q 011161 355 VREVAFRSLCKSPIYPRDTAMTESQHAV--LSPDKKIFVFETVQQAHDVPFGS---YFEIHGRWHLETIAENSSTIDIKV 429 (492)
Q Consensus 355 ~R~~~y~~~~~~~~gp~~t~~~~~q~~~--~~~~~~~~vi~~~~~~~dVPygd---~F~v~~r~~~~~~~~~~c~l~v~~ 429 (492)
.--+-|... .+.|-..+=..+++.- ..+.+.+++++.+..-+.+|.-. .-...++|.|++.++++|+|.--
T Consensus 95 ~dI~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi- 170 (205)
T cd08907 95 TEVYHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHI- 170 (205)
T ss_pred CEEEEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEE-
Confidence 334555552 2233333334444432 24555688888888877787764 56778999999999999999999
Q ss_pred eeeeEEEeccc--ee
Q 011161 430 VSAGAHFKKWC--VI 442 (492)
Q Consensus 430 ~~~~V~~~K~t--~~ 442 (492)
+.|++.+++ |.
T Consensus 171 --~rvD~rG~~P~Wy 183 (205)
T cd08907 171 --CRADLRGRSPDWY 183 (205)
T ss_pred --EEeCCCCCCcHHH
Confidence 999999966 64
No 176
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=55.30 E-value=1.4e+02 Score=25.82 Aligned_cols=62 Identities=8% Similarity=-0.039 Sum_probs=40.3
Q ss_pred CCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEecc--ceeehheehhHHHhHHHHHHHHHHHHHHHH
Q 011161 400 DVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKW--CVIQFKIKTGAVNKYKKEVELMLETARSYI 469 (492)
Q Consensus 400 dVPygd~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~--t~~K~~Iek~~~~~~~~~~~~~~~~~~~~~ 469 (492)
+.+-+....+...|.++. ..++|+|.+. ..+..... .+.+.+|++ ..++.++.+++.+++.+
T Consensus 81 ~~~~~g~~~~~~~~~l~~-~~~gT~v~~~---~~~~~~g~l~~l~~~~v~~----~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 81 DARGQGTAEATVTLRLSP-AGGGTRVTVD---TDLALTGKLAQFGRGGIGD----VAGRLLAQFAANLEARL 144 (146)
T ss_pred cCCCcceEEEEEEEEEEe-cCCcEEEEEE---EEEEEeeEhHHhChhHHHH----HHHHHHHHHHHHHHHHh
Confidence 356666678888999988 4578999999 88877663 355555555 34444555555555443
No 177
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=52.52 E-value=2e+02 Score=26.91 Aligned_cols=102 Identities=7% Similarity=0.006 Sum_probs=57.7
Q ss_pred EEEEEecCCCCCCCce-eEeEEEEEEecCCCCeEEEEEEEecCCCCC-CCeE---EEEEEEEEEeeCC--CceEEEEEEe
Q 011161 358 VAFRSLCKSPIYPRDT-AMTESQHAVLSPDKKIFVFETVQQAHDVPF-GSYF---EIHGRWHLETIAE--NSSTIDIKVV 430 (492)
Q Consensus 358 ~~y~~~~~~~~gp~~t-~~~~~q~~~~~~~~~~~vi~~~~~~~dVPy-gd~F---~v~~r~~~~~~~~--~~c~l~v~~~ 430 (492)
+.|......|.+|-+. ..+..++.....+ .++++......+..|- .++- ...+.|.|++.++ ++|++...
T Consensus 97 i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~-~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~-- 173 (209)
T cd08905 97 ITHEVAAETAGNVVGPRDFVSVRCAKRRGS-TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWL-- 173 (209)
T ss_pred EEEEEeccCCCCccCccceEEEEEEEEcCC-cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEE--
Confidence 4454433344333222 3333444444433 4566666555555553 3443 3567899999876 78999998
Q ss_pred eeeEEEeccceeehheehhHHHhHHHHHHHHHHH
Q 011161 431 SAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET 464 (492)
Q Consensus 431 ~~~V~~~K~t~~K~~Iek~~~~~~~~~~~~~~~~ 464 (492)
+.++..++ +=+.+|.+...+...+.++.|=+.
T Consensus 174 -~~~DpkG~-iP~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 174 -LSIDLKGW-LPKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred -EeecCCCC-CCHHHHHHHhHHhHHHHHHHHHHH
Confidence 88887765 334555555555555555555333
No 178
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=52.36 E-value=1.6e+02 Score=27.73 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=40.8
Q ss_pred cCCCCeEEEEEEEecCCCCCCCeEE---EEEEEEEEeeCCCceEEEEEEeeeeEEEeccc
Q 011161 384 SPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVVSAGAHFKKWC 440 (492)
Q Consensus 384 ~~~~~~~vi~~~~~~~dVPygd~F~---v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t 440 (492)
.+++.++++.....-+..|.-++.+ ..++|.|++.++++|+|.-- +.|++.++.
T Consensus 123 ~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i---~~vDpkG~~ 179 (205)
T cd08909 123 LPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHI---CRVDLKGHS 179 (205)
T ss_pred CCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEE---EEecCCCCC
Confidence 4555555666666656677765544 46899999999889999999 999998866
No 179
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=49.99 E-value=2.1e+02 Score=26.23 Aligned_cols=86 Identities=7% Similarity=0.150 Sum_probs=56.6
Q ss_pred EEEEecCCCCeEEEEEEEecCCCCC--CCeEEEE---EEEEEEeeCCCceEEEEEEeeeeEEEeccceeehheehhHHHh
Q 011161 379 QHAVLSPDKKIFVFETVQQAHDVPF--GSYFEIH---GRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNK 453 (492)
Q Consensus 379 q~~~~~~~~~~~vi~~~~~~~dVPy--gd~F~v~---~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~~~~ 453 (492)
+......++..+++......+..|- .++-+++ ..|+|+..+++.|++... ..++..++.- +.++..-+.+.
T Consensus 113 ~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~---~~~D~~G~iP-~~~~n~~~~~~ 188 (206)
T PF01852_consen 113 RSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYV---SQVDPKGWIP-SWLVNMVVKSQ 188 (206)
T ss_dssp EEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEE---EEEESSSSSH-HHHHHHHHHHH
T ss_pred EEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEE---EEECCCCCCh-HHHHHHHHHHh
Confidence 3333346655666666777777774 5665544 679999999999999999 8888877552 34444445555
Q ss_pred HHHHHHHHHHHHHHH
Q 011161 454 YKKEVELMLETARSY 468 (492)
Q Consensus 454 ~~~~~~~~~~~~~~~ 468 (492)
..+.++.+.+.++++
T Consensus 189 ~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 189 PPNFLKNLRKALKKQ 203 (206)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666555543
No 180
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=48.97 E-value=1.1e+02 Score=23.03 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=38.1
Q ss_pred EEEecCeeEEEeccCCceeEEEEeccceeeEeeccccc--ccC--cEEEEEecC
Q 011161 195 MYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF--INP--AITIILRMG 244 (492)
Q Consensus 195 lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~--~~~--~i~i~~~~g 244 (492)
..++.+.+...+-+|+ .....||+..|.+|+-+.+.+ .+. .|.+.+..|
T Consensus 6 y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~ 58 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGG 58 (80)
T ss_pred EEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCC
Confidence 5678888888887776 677899999999999988653 233 688887654
No 181
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=47.67 E-value=24 Score=33.43 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=28.9
Q ss_pred eeEEEEeccceeeEeecccccccCcEEEEEecC
Q 011161 212 QMKVIIPIGDIDEIQRSQHAFINPAITIILRMG 244 (492)
Q Consensus 212 ~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~~~g 244 (492)
...|.||+.||.+|++.+..+..+.|.+++++|
T Consensus 111 ~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG 143 (213)
T PF12068_consen 111 SYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDG 143 (213)
T ss_pred ceEEEEEhhheeeEEecCCCCCceEEEEEecCC
Confidence 447899999999999999877777899999887
No 182
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=47.05 E-value=1.3e+02 Score=23.16 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=31.0
Q ss_pred EeccceeeEeecccccccC-----cEEEEEecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHH
Q 011161 217 IPIGDIDEIQRSQHAFINP-----AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 279 (492)
Q Consensus 217 i~~~~I~~i~k~~~~~~~~-----~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 279 (492)
||+++|.+|++.++....| .|+|...+ ......|=.++++-.+.|++
T Consensus 21 I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~----------------~~~i~IsP~~~~~FI~~L~k 72 (74)
T PF06713_consen 21 IPIEDIRSIRPTKNPLSSPALSLDRLEIYYGK----------------YKSILISPKDKEEFIAELQK 72 (74)
T ss_pred EEhHHccEEEecCCccccccccccEEEEEECC----------------CCEEEEECCCHHHHHHHHHh
Confidence 9999999999997543333 68887632 23356665666666666554
No 183
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=44.24 E-value=2.3e+02 Score=25.19 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=60.1
Q ss_pred CceeEeEEEEEEecCCCCeEEEEEEEecCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeccceeehheehhH
Q 011161 371 RDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGA 450 (492)
Q Consensus 371 ~~t~~~~~q~~~~~~~~~~~vi~~~~~~~dVPygd~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~ 450 (492)
..-.+.++++.....+ ..+-.+.....+ |.-..+...+.++. ...+|++.+. ..|. .|=.++-++||+.+
T Consensus 71 ~~l~v~~~e~w~~~~~-g~~~g~~~~~~~----G~P~~~~G~~~L~~-~~~gt~~~~~---g~v~-v~VPlvGgkiE~~v 140 (159)
T PF10698_consen 71 GDLRVTRTETWTPLDD-GRRTGTFTVSIP----GAPVSISGTMRLRP-DGGGTRLTVE---GEVK-VKVPLVGGKIEKAV 140 (159)
T ss_pred CCeEEEEEEEEecCCC-CeEEEEEEEEec----CceEEEEEEEEEec-CCCCEEEEEE---EEEE-EEEccccHHHHHHH
Confidence 3446666666533333 455555555555 45578899999988 4566877777 4443 23358889999999
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 011161 451 VNKYKKEVELMLETARSYI 469 (492)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~ 469 (492)
.+.+.+.++.--+.+.+.|
T Consensus 141 ~~~~~~~~~~e~~~~~~wl 159 (159)
T PF10698_consen 141 AENLRKLLEAEQEFTAEWL 159 (159)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 9999998887777666543
No 184
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=39.25 E-value=76 Score=27.02 Aligned_cols=33 Identities=9% Similarity=0.311 Sum_probs=26.2
Q ss_pred CeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeccc
Q 011161 405 SYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWC 440 (492)
Q Consensus 405 d~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t 440 (492)
+-...+.+|.|+..++++|+|... ..+.+....
T Consensus 82 ~~~~~~g~w~~~~~~~~~t~Vt~~---~~~~~~~~~ 114 (142)
T cd08861 82 PVASMSGEWRFEPLGGGGTRVTLR---HDFTLGIDS 114 (142)
T ss_pred ChhhheeEEEEEECCCCcEEEEEE---EEEEECCCC
Confidence 445778899999998788998888 888877543
No 185
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=36.37 E-value=3.5e+02 Score=25.05 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=46.2
Q ss_pred EEEEEecCCCCeEEEEEEEecCCCCCCCe-EE---EEEEEEEEeeCC--CceEEEEEEeeeeEEEeccceeehheehhHH
Q 011161 378 SQHAVLSPDKKIFVFETVQQAHDVPFGSY-FE---IHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV 451 (492)
Q Consensus 378 ~q~~~~~~~~~~~vi~~~~~~~dVPygd~-F~---v~~r~~~~~~~~--~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~~ 451 (492)
.++.....+ ..+++.....-+..|-..- -+ ..+.|.|+..++ ++|.+... +.++..++. =+.+|.+.+.
T Consensus 117 ~r~~~~~~~-~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~---~~~Dp~G~i-P~~lvN~~~~ 191 (208)
T cd08868 117 LRHWGIREN-CYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWL---LNTDLKGWL-PQYLVDQALA 191 (208)
T ss_pred EEEEEecCC-eEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEE---EEECCCCCC-cceeeehhhH
Confidence 333344333 3334434333356664443 33 458899999865 78999988 888888765 1223555555
Q ss_pred HhHHHHHHHHHH
Q 011161 452 NKYKKEVELMLE 463 (492)
Q Consensus 452 ~~~~~~~~~~~~ 463 (492)
+..-+.++.|-+
T Consensus 192 ~~~~~~~~~Lr~ 203 (208)
T cd08868 192 SVLLDFMKHLRK 203 (208)
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 186
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=35.47 E-value=51 Score=37.53 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=62.8
Q ss_pred CCcEEEEEECCee-eeeeccCCC-CCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEE
Q 011161 35 SDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWY 110 (492)
Q Consensus 35 sDPyv~v~~~~~~-~~T~~~~~t-~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~ 110 (492)
.++|+.+.+.... .+|....+. .+|.|.+.|.+.+......+.+.+-+.+..+....+|.+.+++..+ +.....|+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~ 217 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWF 217 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccccee
Confidence 4888888876544 467766665 7899999998888777778889988888777677899999999887 46667898
Q ss_pred EccC
Q 011161 111 TLDS 114 (492)
Q Consensus 111 ~L~~ 114 (492)
++..
T Consensus 218 ~Il~ 221 (887)
T KOG1329|consen 218 PILD 221 (887)
T ss_pred eeec
Confidence 8754
No 187
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=34.72 E-value=89 Score=26.17 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=31.7
Q ss_pred EEEEEE-CCeeeeeeccCCCCCCeeccEEEEEeeCC--------CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 011161 38 YAIITC-GSEKRFSSMVPGSRYPMWGEEFNFSVDEL--------PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (492)
Q Consensus 38 yv~v~~-~~~~~~T~~~~~t~nP~W~e~f~f~i~~~--------~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l 102 (492)
||.+.. +-+.+.|.++. +.+|.++-+-.+.+... ...+.++++..-. .....+|.+++++..+
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~l 73 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPL 73 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhh
Confidence 344443 34456676666 77999998877776421 2458999988653 3467899999999987
No 188
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=32.38 E-value=57 Score=31.13 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=29.2
Q ss_pred cceEEEEecCeeEEEeccCCceeEEEEeccceeeEeec
Q 011161 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228 (492)
Q Consensus 191 ~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~ 228 (492)
..||+.+++.+|.|-.+ .-+..|||++|.+|...
T Consensus 26 ~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 26 VKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred EEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 44999999999999863 45779999999999985
No 189
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=31.74 E-value=4.3e+02 Score=24.65 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=42.1
Q ss_pred EEEEEEecCCCCCCCeE----EEEEEEEEEeeCCCceEEEEEEeeeeEEEeccceeehheehhHHHhHHHHHHHHHHHH
Q 011161 391 VFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETA 465 (492)
Q Consensus 391 vi~~~~~~~dVPygd~F----~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~~~~~~~~~~~~~~~~ 465 (492)
++......+.+|-.+-| ...+.|.|+..++++|++... +..+--+ .+=+.++..-+.++.-+.++.|-+.+
T Consensus 130 v~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~---~~~DPgG-~IP~wlvN~~~~~~~~~~l~~l~ka~ 204 (207)
T cd08910 130 ILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMY---YFDNPGG-MIPSWLINWAAKNGVPNFLKDMQKAC 204 (207)
T ss_pred EEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEE---EEeCCCC-cchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444555677765433 366888998888888999988 7777533 22233444444444444444443333
No 190
>PRK10724 hypothetical protein; Provisional
Probab=31.47 E-value=1.1e+02 Score=27.38 Aligned_cols=28 Identities=14% Similarity=0.546 Sum_probs=22.4
Q ss_pred eEEEEEEEEEEeeCCCceEEEEEEeeeeEEE
Q 011161 406 YFEIHGRWHLETIAENSSTIDIKVVSAGAHF 436 (492)
Q Consensus 406 ~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~ 436 (492)
-=+.++.|.|+..++++|+|... ..++|
T Consensus 96 F~~l~g~W~f~p~~~~~t~V~~~---l~fef 123 (158)
T PRK10724 96 FKKLIGGWKFTPLSQEACRIEFH---LDFEF 123 (158)
T ss_pred hhhccceEEEEECCCCCEEEEEE---EEEEE
Confidence 34588999999998888998887 66663
No 191
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=30.64 E-value=3.8e+02 Score=23.72 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=35.6
Q ss_pred CCCeEEEEEEEecCCCCCC-CeEEEEE---EEEEEeeCCCceEEEEEEeeeeEEEeccc
Q 011161 386 DKKIFVFETVQQAHDVPFG-SYFEIHG---RWHLETIAENSSTIDIKVVSAGAHFKKWC 440 (492)
Q Consensus 386 ~~~~~vi~~~~~~~dVPyg-d~F~v~~---r~~~~~~~~~~c~l~v~~~~~~V~~~K~t 440 (492)
++..+++......+.+|-. ++-+... -|.|+..++++|++... ..++...+.
T Consensus 113 ~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~---~~~D~~g~i 168 (193)
T cd00177 113 DGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYV---LQVDPKGSI 168 (193)
T ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEE---EeeCCCCCc
Confidence 3445555544444346655 5555554 48999998899999999 999888754
No 192
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=30.20 E-value=3e+02 Score=22.29 Aligned_cols=70 Identities=20% Similarity=0.392 Sum_probs=43.2
Q ss_pred eeeeecccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeeccc-cccc-C-cEEEEEecCCCCCCCCCCCCCCC
Q 011161 182 SCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH-AFIN-P-AITIILRMGAGGHGVPPLGSPDG 258 (492)
Q Consensus 182 ~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~-~~~~-~-~i~i~~~~g~~~~~~~~~~~~~~ 258 (492)
.|.+... +|-||...+.+.|-. .+--++|+++||..|+=... ..-. . .+.|++++. +
T Consensus 5 ~c~~ka~---~g~L~pl~~~l~f~~----~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~-------------~ 64 (95)
T PF08512_consen 5 KCSYKAN---EGFLYPLEKCLLFGL----EKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDY-------------E 64 (95)
T ss_dssp EEEETTE---EEEEEEESSEEEEEC----SSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT--------------T
T ss_pred eEecccc---CEEEEEccceEEEec----CCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecC-------------C
Confidence 3444443 499999999777731 23457999999999988653 2211 1 677777531 3
Q ss_pred ceeEEEeeecchHH
Q 011161 259 RVRYKFASFWNRNH 272 (492)
Q Consensus 259 ~~~~~f~sf~~rd~ 272 (492)
...+.|++. +|++
T Consensus 65 ~~~~~fs~I-~~~e 77 (95)
T PF08512_consen 65 GPPHEFSSI-DREE 77 (95)
T ss_dssp S-EEEEEEE-EGGG
T ss_pred CCcEEEeeE-CHHH
Confidence 468899985 4443
No 193
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.47 E-value=1.5e+02 Score=25.45 Aligned_cols=58 Identities=9% Similarity=0.037 Sum_probs=34.2
Q ss_pred EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeccceeehheehhHHHhHHHHHHHHHHHHHHHH
Q 011161 407 FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 469 (492)
Q Consensus 407 F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~~~~~~~~~~~~~~~~~~~~ 469 (492)
+.....|.|+.. .++|+|.+. ..+........ .++.......+++.+...++.++..+
T Consensus 91 ~~~~~~~~~~~~-~~gT~v~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 91 ATNDVEFTLEPV-GGGTKVTWG---MSGELPFPLKL-MYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred ccceEEEEEEEc-CCceEEEEE---EEecCCchHHH-HHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999 557999988 55554433221 23334444444555555555555444
No 194
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=29.33 E-value=4.8e+02 Score=24.47 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=38.6
Q ss_pred cCCCCeEEEEEEEecCCCCCCCeEE---EEEEEEEEeeCCCceEEEEEEeeeeEEEeccc
Q 011161 384 SPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVVSAGAHFKKWC 440 (492)
Q Consensus 384 ~~~~~~~vi~~~~~~~dVPygd~F~---v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t 440 (492)
..++.+.++..+..-..+|-. +-+ +.++|.|++.++++|+|.-- +.++..++.
T Consensus 123 ~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~g~t~vtyi---~~~DPgG~i 178 (204)
T cd08908 123 LPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGSGKSKLTYM---CRIDLRGHM 178 (204)
T ss_pred CCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCCCcEEEEEE---EEeCCCCCC
Confidence 455444444444666778844 444 57899999999999999999 999987755
No 195
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=27.51 E-value=1.8e+02 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.648 Sum_probs=24.0
Q ss_pred EEEEEEEEEeeCCCceEEEEEEeeeeEEEec
Q 011161 408 EIHGRWHLETIAENSSTIDIKVVSAGAHFKK 438 (492)
Q Consensus 408 ~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K 438 (492)
..++.|.|+..++++|++... +.++...
T Consensus 82 ~~~g~w~~~p~~~~~T~v~~~---~~~~~~~ 109 (138)
T cd07813 82 HLEGEWRFKPLGENACKVEFD---LEFEFKS 109 (138)
T ss_pred hceeEEEEEECCCCCEEEEEE---EEEEECC
Confidence 468999999999899999998 8887764
No 196
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=25.34 E-value=7.5e+02 Score=25.34 Aligned_cols=103 Identities=11% Similarity=0.229 Sum_probs=65.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCC--eeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYP--MWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (492)
Q Consensus 15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP--~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I 92 (492)
.|.|.|.+-.++ +-....|+.+..+....+|..+.-+..- .-.+...+.+..-+..|++.+|-... .+...|
T Consensus 59 ~LLVeI~EI~~i-----~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~hI 132 (508)
T PTZ00447 59 YLLVKINEIFNI-----NKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVHI 132 (508)
T ss_pred eEEEEehhhhcc-----ccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeEE
Confidence 455666655444 2345678888888888877555433222 23344555555556779999998654 456789
Q ss_pred EEEEEEcccC----CCcccEEEEccCCCceEEEEEE
Q 011161 93 GSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIK 124 (492)
Q Consensus 93 G~~~i~l~~l----~~~~~~w~~L~~~~G~i~l~l~ 124 (492)
|.+.+.++.- .-+...||-+.. .|+...++.
T Consensus 133 gdI~InIn~dIIdk~FPKnkWy~c~k-DGq~~cRIq 167 (508)
T PTZ00447 133 GQIKIDINASVISKSFPKNEWFVCFK-DGQEICKVQ 167 (508)
T ss_pred EEEEecccHHHHhccCCccceEEEec-CCceeeeEE
Confidence 9999999853 344678999954 565544433
No 197
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=24.92 E-value=5.5e+02 Score=23.65 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCCCCCe---EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeccc--ee
Q 011161 400 DVPFGSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWC--VI 442 (492)
Q Consensus 400 dVPygd~---F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K~t--~~ 442 (492)
.+|- ++ +...+.|.|++.++++|+|.-. +.++..++. |+
T Consensus 132 ~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~---~~~Dp~G~iP~wl 175 (197)
T cd08869 132 PVPL-GGVRAVVLASRYLIEPCGSGKSRVTHI---CRVDLRGRSPEWY 175 (197)
T ss_pred CCCC-CCEEEEEEeeeEEEEECCCCCeEEEEE---EEECCCCCCCcee
Confidence 5555 54 4556889999999999999999 999998865 65
No 198
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=24.89 E-value=5.6e+02 Score=23.76 Aligned_cols=106 Identities=9% Similarity=0.003 Sum_probs=60.9
Q ss_pred EEEEEEEecCCCCCCCceeEeEEEEEEecCCCCeEEEEEEEecCCCCCCCeEE---EEEEEEEEee--CCCceEEEEEEe
Q 011161 356 REVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETI--AENSSTIDIKVV 430 (492)
Q Consensus 356 R~~~y~~~~~~~~gp~~t~~~~~q~~~~~~~~~~~vi~~~~~~~dVPygd~F~---v~~r~~~~~~--~~~~c~l~v~~~ 430 (492)
+-+-|.....-|+.+.. .+...+.....++..+++.....-+.+|-.++-+ ..+.|.|+.. ++++|++.+.
T Consensus 98 ~i~y~~~~~P~P~s~RD--~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~-- 173 (209)
T cd08870 98 EIVRWVKKFPFPLSDRE--YVIARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVT-- 173 (209)
T ss_pred EEEEEEEECCCcCCCce--EEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEE--
Confidence 33334443334454433 2222333333344444554444445788764444 4578999988 6778888777
Q ss_pred eeeEEEeccceeehheehhHHHhHHHHHHHHHHHHHH
Q 011161 431 SAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARS 467 (492)
Q Consensus 431 ~~~V~~~K~t~~K~~Iek~~~~~~~~~~~~~~~~~~~ 467 (492)
+..+- +..+=+.++...+..+.-..++.|-+.+++
T Consensus 174 -~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 174 -YFHNP-DGGIPRELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred -EEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 55553 544556677777777777777777665544
No 199
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.82 E-value=2.5e+02 Score=23.77 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=32.9
Q ss_pred EEEEEEEEEeeCC-CceEEEEEEeeeeEEEeccceeehheehhHHHhHHHHHHHHHHHHHHHH
Q 011161 408 EIHGRWHLETIAE-NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 469 (492)
Q Consensus 408 ~v~~r~~~~~~~~-~~c~l~v~~~~~~V~~~K~t~~K~~Iek~~~~~~~~~~~~~~~~~~~~~ 469 (492)
..+..|.++..++ ++|++... ..++... .+.-.++.+- .+..+..+++.+++.+
T Consensus 88 ~~~g~w~~~~~~~~~~t~v~~~---~~~~~~~-~~p~~l~~~~----~~~~~~~~l~~lr~~a 142 (144)
T cd08866 88 RFEGSWRLEPLADGGGTLLTYE---VEVKPDF-FAPVFLVEFV----LRQDLPTNLLAIRAEA 142 (144)
T ss_pred ceEEEEEEEECCCCCeEEEEEE---EEEEeCC-CCCHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 5699999999987 78998888 7777654 3333333333 3333444444444443
No 200
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=24.19 E-value=2.4e+02 Score=24.69 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=33.7
Q ss_pred ecCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEe-ccceeehheehhHHHhHHHHHHHH
Q 011161 397 QAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFK-KWCVIQFKIKTGAVNKYKKEVELM 461 (492)
Q Consensus 397 ~~~dVPygd~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~-K~t~~K~~Iek~~~~~~~~~~~~~ 461 (492)
..++.| .+.....|.|+..++. |+|... ....+. ...+.-..|.+.....+...++.|
T Consensus 80 ~~~~~p---~~~m~~~W~f~~~~~g-T~V~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 138 (146)
T cd08860 80 RVETGP---FAYMNIRWEYTEVPEG-TRMRWV---QDFEMKPGAPVDDAAMTDRLNTNTRAQMARI 138 (146)
T ss_pred EecCCC---cceeeeeEEEEECCCC-EEEEEE---EEEEECCCCccchHHHHHHHhcccHHHHHHH
Confidence 334545 6689999999999654 888888 666655 233332233333333333333333
No 201
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=23.64 E-value=4.6e+02 Score=22.27 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=46.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeee-eeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCC-CCCCc
Q 011161 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI-IWKST 90 (492)
Q Consensus 16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~-T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~-~~~dd 90 (492)
|.+.-+.-.+++..+..+.+.||+.|+-+..... +........-.=...+.+.+.. ...-+.|.+|+... ....+
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~~ 85 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSKE 85 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCCE
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccccC
Confidence 4444444566666666778999999998776652 2222211111112333443321 13447888888763 33455
Q ss_pred eeEEEEEEcccC
Q 011161 91 VLGSVIVTVESE 102 (492)
Q Consensus 91 ~IG~~~i~l~~l 102 (492)
.+.++++--.-+
T Consensus 86 ~~f~~~FnT~Fi 97 (134)
T PF10409_consen 86 KMFRFWFNTGFI 97 (134)
T ss_dssp EEEEEEEEGGGS
T ss_pred eEEEEEEeeeee
Confidence 666666655544
No 202
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=22.49 E-value=5.4e+02 Score=22.71 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=64.8
Q ss_pred ecCCccCCCCCCeeEEEEEEEecCCCCCCCceeEeEEEEEEecCCCCeEEEEEEEecCCCCCCCeEEEEEEEEEEeeCCC
Q 011161 342 MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAEN 421 (492)
Q Consensus 342 ~~~W~~~~~~~~~~R~~~y~~~~~~~~gp~~t~~~~~q~~~~~~~~~~~vi~~~~~~~dVPygd~F~v~~r~~~~~~~~~ 421 (492)
-|.|.. +|..|.++|... ||. ....|++...++....+--+... +=+.+++.+-.....+...+++
T Consensus 45 eGdgg~----gGSIk~~~f~~~-----~~~---~~~Kekve~~D~~~~~~~y~viE--Gd~l~~~~~~~~~~~~~~~~~g 110 (151)
T PF00407_consen 45 EGDGGP----GGSIKKWTFGPG-----GPF---KYVKEKVEAIDEENKTITYTVIE--GDVLGDYKSFKSTIQKIPKGDG 110 (151)
T ss_dssp ESSSST----TT-EEEEEEETT-----SSE---EEEEEEEEEEETTTTEEEEEEEE--ETTGTTTEEEEEEEEEEEETTS
T ss_pred ccCCCC----CCeEEEEEecCC-----CCc---ceeEEEEEeecCCCcEEEEEEEe--ccccccEEEEEEEEEecCCCCC
Confidence 577763 578999999872 442 34578887665533322223233 3345666666666666677777
Q ss_pred ceEEEEEEeeeeEEEeccceeehheehh-HHHhHHHHHHHHHHHHHHHHhhc
Q 011161 422 SSTIDIKVVSAGAHFKKWCVIQFKIKTG-AVNKYKKEVELMLETARSYIKIC 472 (492)
Q Consensus 422 ~c~l~v~~~~~~V~~~K~t~~K~~Iek~-~~~~~~~~~~~~~~~~~~~~~~~ 472 (492)
+|.++.. ++|-+.. +.. .-+...+.+..+++.+..+|.+|
T Consensus 111 ~~v~k~t-----~~Ye~~~------~~~~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 111 GCVVKWT-----IEYEKKG------EDVPPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp CEEEEEE-----EEEEESS------TSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEE-----EEEEecC------CCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 7877666 5565522 222 34556666888888889888764
No 203
>PF04386 SspB: Stringent starvation protein B; InterPro: IPR007481 Escherichia coli stringent starvation protein B (SspB), is thought to enhance the specificity of degradation of tmRNA-tagged proteins by the ClpXP protease. The tmRNA tag, also known as ssrA, is an 11-aa peptide added to the C terminus of proteins stalled during translation, targets proteins for degradation by ClpXP and ClpAP. SspB is a cytoplasmic protein that specifically binds to residues 1-4 and 7 of the tag. Binding of SspB enhances degradation of tagged proteins by ClpX, and masks sequence elements important for ClpA interactions, inhibiting degradation by ClpA []. However, more recent work has cast doubt on the importance of SspB in wild-type cells []. SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation. SspB may play a special role during nutrient stress, for example by ensuring rapid degradation of the products of stalled translation, without causing a global increase in degradation of all ClpXP substrates [].; PDB: 2NYS_A 2QAZ_D 2QAS_A 1OX9_A 1OX8_A 1YFN_C 1TWB_B 1OU9_C 1OU8_B 1ZSZ_B ....
Probab=21.46 E-value=1.9e+02 Score=25.89 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=32.7
Q ss_pred eEEEEecCeeEEEeccCCceeEEEEeccceeeEeecc
Q 011161 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229 (492)
Q Consensus 193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~ 229 (492)
..|.+.+..+.|..+.=|....+.|||..|..|-...
T Consensus 67 ~~L~v~~d~i~f~arF~G~~~~i~VP~~AV~aiya~e 103 (155)
T PF04386_consen 67 RDLSVDNDAISFTARFGGVPESIYVPFSAVLAIYARE 103 (155)
T ss_dssp EEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEEETT
T ss_pred CCcEEECCEEEEEEEECCEEEEEEEhHHhhheeeccc
Confidence 6788999999999998888999999999999998765
No 204
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=20.58 E-value=1.7e+02 Score=26.02 Aligned_cols=37 Identities=22% Similarity=0.519 Sum_probs=28.8
Q ss_pred EecCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEec
Q 011161 396 QQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK 438 (492)
Q Consensus 396 ~~~~dVPygd~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~~K 438 (492)
++..|=||. +..++|.|+..+++.|+|... +.-+|+.
T Consensus 77 ~~l~~GPFk---~L~~~W~F~pl~~~~ckV~f~---ldfeF~s 113 (146)
T COG2867 77 MKLIDGPFK---YLKGGWQFTPLSEDACKVEFF---LDFEFKS 113 (146)
T ss_pred hhhhcCChh---hhcCceEEEECCCCceEEEEE---EEeeehh
Confidence 344566765 689999999999999999888 7777643
No 205
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=20.43 E-value=55 Score=37.23 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=51.3
Q ss_pred CCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEE
Q 011161 7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (492)
Q Consensus 7 ~~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~ 81 (492)
+.+...-|.+.+.+.+|..|.. ....||...+. ..+.+|.++.++..|.||+++.+.+.. .+.+.+..+
T Consensus 752 ~eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ 825 (1112)
T KOG4269|consen 752 DESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKT 825 (1112)
T ss_pred ccCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhh
Confidence 4666778899999999988843 34667776542 345578999999999999999988754 233445555
Q ss_pred EcC
Q 011161 82 DWD 84 (492)
Q Consensus 82 d~d 84 (492)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 443
No 206
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=20.20 E-value=1.4e+02 Score=26.00 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=26.1
Q ss_pred eEEEEecCeeEEEec-cCCceeEEEEecccee--eEeeccc-ccccCcEEEEE
Q 011161 193 GRMYVSAWHICFHSN-AFSRQMKVIIPIGDID--EIQRSQH-AFINPAITIIL 241 (492)
Q Consensus 193 G~lyis~~~~cF~s~-~~g~~~~~~i~~~~I~--~i~k~~~-~~~~~~i~i~~ 241 (492)
|.|||++..+.|.++ - ...-+.||+..|. .|++... ..--|.|-+..
T Consensus 1 g~L~Vt~~~l~w~~~~~--~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~ql 51 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNED--SSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQL 51 (135)
T ss_dssp EEEEEETTEEEEEET----TTEEEEESS---SEEE--SS-S-S--S--EEEEE
T ss_pred CEEEEecCEEEEECCCc--CCcceeecCCeEEEEEeecCCCCCCCCceEEEEE
Confidence 789999999999983 2 2567889999984 5555544 33344555554
Done!