Query 011162
Match_columns 492
No_of_seqs 292 out of 1347
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 7.3E-49 2.5E-53 402.1 16.6 307 69-468 20-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 1.3E-40 4.4E-45 329.9 12.7 242 192-470 6-259 (270)
3 3mva_O Transcription terminati 100.0 8.9E-34 3E-38 290.2 18.2 277 190-479 18-319 (343)
4 3m66_A Mterf3, mterf domain-co 100.0 2.7E-33 9.3E-38 277.3 10.5 224 123-382 4-233 (270)
5 4fp9_B Mterf domain-containing 100.0 7.4E-32 2.5E-36 273.2 13.8 199 227-466 46-259 (335)
6 4fp9_B Mterf domain-containing 99.9 1.6E-26 5.6E-31 234.1 13.9 181 191-380 46-228 (335)
7 4fzv_B Mterf domain-containing 99.2 9.8E-11 3.4E-15 102.2 13.7 160 301-465 36-213 (239)
8 4fzv_B Mterf domain-containing 98.7 1.1E-07 3.9E-12 82.9 10.4 149 226-379 32-182 (239)
9 3ugm_A TAL effector avrbs3/PTH 88.0 5.5 0.00019 43.2 13.1 26 67-92 203-232 (1047)
10 3ff5_A PEX14P, peroxisomal bio 87.8 0.95 3.2E-05 32.7 5.1 44 331-390 10-53 (54)
11 1oqy_A HHR23A, UV excision rep 85.8 1.1 3.7E-05 45.4 6.3 44 189-241 166-209 (368)
12 2w84_A Peroxisomal membrane pr 82.0 1.8 6.3E-05 32.8 4.5 46 331-392 15-60 (70)
13 4ae4_A Ubiquitin-associated pr 77.6 30 0.001 28.9 11.8 36 192-235 9-44 (118)
14 3ugm_A TAL effector avrbs3/PTH 73.9 24 0.00082 38.4 11.7 15 78-92 252-266 (1047)
15 4hpz_A Dtale2; DNA binding pro 66.4 37 0.0013 34.1 10.5 112 200-320 241-356 (463)
16 3ff5_A PEX14P, peroxisomal bio 63.3 7.7 0.00026 27.9 3.7 33 286-321 21-53 (54)
17 2ooa_A E3 ubiquitin-protein li 58.7 24 0.00083 25.0 5.5 42 190-239 10-51 (52)
18 2cos_A Serine/threonine protei 52.6 19 0.00066 25.7 4.2 40 371-417 13-52 (54)
19 4ae4_A Ubiquitin-associated pr 50.5 77 0.0026 26.3 8.5 34 370-411 79-112 (118)
20 1ify_A HHR23A, UV excision rep 49.5 45 0.0016 23.0 5.9 37 192-236 9-45 (49)
21 2w84_A Peroxisomal membrane pr 46.4 18 0.00061 27.3 3.5 33 286-321 26-58 (70)
22 1uxc_A FRUR (1-57), fructose r 46.0 25 0.00087 25.8 4.4 48 269-316 6-53 (65)
23 3f6w_A XRE-family like protein 45.5 88 0.003 23.0 7.8 64 67-145 14-77 (83)
24 3dfg_A Xcrecx, regulatory prot 44.1 1.6E+02 0.0054 25.5 10.1 23 370-392 138-160 (162)
25 2knz_A Ubiquilin-4; cytoplasm, 43.3 57 0.0019 22.9 5.7 40 191-238 11-51 (53)
26 1oqy_A HHR23A, UV excision rep 40.7 35 0.0012 34.2 5.8 43 226-277 167-209 (368)
27 1ify_A HHR23A, UV excision rep 40.0 34 0.0012 23.7 4.0 38 298-343 8-45 (49)
28 2d9s_A CBL E3 ubiquitin protei 38.3 88 0.003 22.2 5.8 43 189-239 7-49 (53)
29 2c0s_A Conserved domain protei 37.5 51 0.0018 24.4 4.8 41 59-103 4-44 (64)
30 4i16_A Caspase recruitment dom 37.2 75 0.0026 25.3 6.0 59 72-147 25-90 (93)
31 2cos_A Serine/threonine protei 35.5 62 0.0021 23.1 4.6 45 190-241 8-52 (54)
32 2r1j_L Repressor protein C2; p 35.5 72 0.0025 22.2 5.5 54 71-139 9-62 (68)
33 3idw_A Actin cytoskeleton-regu 35.4 37 0.0013 25.7 3.7 48 74-147 7-59 (72)
34 2ooa_A E3 ubiquitin-protein li 34.9 57 0.0019 23.1 4.3 23 298-320 11-33 (52)
35 2knz_A Ubiquilin-4; cytoplasm, 33.3 40 0.0014 23.7 3.5 39 297-343 10-49 (53)
36 2jy5_A Ubiquilin-1; UBA, alter 32.0 99 0.0034 21.5 5.4 40 188-235 9-49 (52)
37 2xzm_O RPS13E; ribosome, trans 31.9 60 0.0021 28.2 5.0 82 238-321 12-96 (153)
38 2bzb_A Conserved domain protei 30.7 59 0.002 23.8 4.1 40 60-103 5-44 (62)
39 1vg5_A RSGI RUH-014, rhomboid 30.4 1E+02 0.0035 23.3 5.5 42 188-237 26-67 (73)
40 2g3q_A Protein YBL047C; endocy 30.0 95 0.0033 20.4 4.9 36 193-236 6-41 (43)
41 3e3v_A Regulatory protein RECX 29.3 2.1E+02 0.0071 25.1 8.5 115 256-390 46-162 (177)
42 3kz3_A Repressor protein CI; f 29.3 1.7E+02 0.0057 21.4 6.9 57 69-140 14-70 (80)
43 1wji_A Tudor domain containing 28.7 53 0.0018 24.1 3.6 36 300-343 11-46 (63)
44 2xi8_A Putative transcription 28.7 1E+02 0.0036 21.1 5.3 52 72-138 6-57 (66)
45 1vg5_A RSGI RUH-014, rhomboid 28.0 38 0.0013 25.8 2.7 37 298-342 29-65 (73)
46 3d5l_A Regulatory protein RECX 27.6 2.2E+02 0.0075 26.0 8.6 116 256-391 89-206 (221)
47 3u5c_N S27A, YS15, 40S ribosom 27.0 59 0.002 28.2 4.1 82 238-321 10-94 (151)
48 1wji_A Tudor domain containing 26.2 1.5E+02 0.005 21.6 5.7 38 192-237 10-47 (63)
49 3eus_A DNA-binding protein; st 24.2 2E+02 0.007 21.4 6.6 54 70-138 17-70 (86)
50 1adr_A P22 C2 repressor; trans 23.3 1.5E+02 0.0052 21.0 5.5 53 71-138 9-61 (76)
51 2cp8_A NEXT to BRCA1 gene 1 pr 22.9 1.3E+02 0.0045 21.4 4.6 16 297-312 8-23 (54)
52 1z96_A DNA-damage, UBA-domain 22.5 1.6E+02 0.0053 18.7 5.6 35 192-234 5-39 (40)
53 1veg_A NEDD8 ultimate buster-1 22.3 1.4E+02 0.0049 23.1 5.1 39 191-237 29-67 (83)
54 2l8n_A Transcriptional repress 22.2 62 0.0021 23.8 3.0 44 269-315 15-58 (67)
55 1wiv_A UBP14, ubiquitin-specif 21.7 88 0.003 23.6 3.8 37 299-343 30-66 (73)
56 1r69_A Repressor protein CI; g 21.6 1.6E+02 0.0054 20.4 5.2 52 71-138 5-56 (69)
57 3bs3_A Putative DNA-binding pr 21.2 1.8E+02 0.0061 20.6 5.5 54 72-140 15-68 (76)
58 1veg_A NEDD8 ultimate buster-1 20.6 87 0.003 24.4 3.6 39 299-345 30-69 (83)
59 4e9m_A Nucleotide-binding olig 20.2 79 0.0027 27.2 3.5 75 69-150 44-131 (144)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=7.3e-49 Score=402.07 Aligned_cols=307 Identities=19% Similarity=0.255 Sum_probs=247.6
Q ss_pred HHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhhhhhHHHHHhc
Q 011162 69 KAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVEN 148 (492)
Q Consensus 69 ~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~~~~ia~~V~~ 148 (492)
++++.+ |.+||++.++|.+++++ + |+.+ ++++|+|++||+++|+++++ |+.+|.+
T Consensus 20 ~~~v~~-L~s~Gl~~~~~~~~~p~----l-~~~s------------------~~~~~~vl~fL~~~G~s~~~-i~~iv~~ 74 (343)
T 3mva_O 20 EDLLKN-LLTMGVDIDMARKRQPG----V-FHRM------------------ITNEQDLKMFLLSKGASKEV-IASIISR 74 (343)
T ss_dssp CCHHHH-HHHHTCCHHHHHHHCGG----G-GGCS------------------CCCHHHHHHHHHHTTCCHHH-HHHHHHH
T ss_pred HHHHHH-HHHcCCCHHHHHHhCch----h-hccC------------------cccHHHHHHHHHHcCCCHHH-HHHHHHh
Confidence 444544 48888888888887666 2 4444 77888888888888888866 8888888
Q ss_pred CCCCCCcccccCccCCCCCcCCCChHHHHhccccccCCCCCChHHHHHHHHhCCCCHHHHHHHHHhCCc-eeecCcCCCH
Q 011162 149 FPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPA-FSYYSLEGKI 227 (492)
Q Consensus 149 ~P~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~r~l~~~~~~~l~~~l~~L~~lG~s~~~i~~ll~~~P~-lL~~~le~~l 227 (492)
+|.+|+.+ . .++.|+++||.++|++.+++.+++.++|. +++.+.++++
T Consensus 75 ~P~lL~~~----------------~---------------~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l 123 (343)
T 3mva_O 75 YPRAITRT----------------P---------------ENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNL 123 (343)
T ss_dssp CGGGGGCC----------------H---------------HHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHH
T ss_pred CcHHHhCC----------------H---------------HHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhH
Confidence 88877542 1 14678888888888888888888888888 4444432378
Q ss_pred HHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCC------hhhHHHHHHhCCccccccchhhhhH
Q 011162 228 KPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVD------KTQWAKVIQRFPAVLTYSRQKVKQT 301 (492)
Q Consensus 228 kp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~------~~~i~kll~~~P~iL~~s~ekl~~~ 301 (492)
+|+++||+++|++.++|++++.++|++++.++ +++++++++++++|++ .+.+.+++.++|.+++++.++++++
T Consensus 124 ~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~-e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~ 202 (343)
T 3mva_O 124 ENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSL-DLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKAN 202 (343)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCChhheeCH-HHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHH
Confidence 88888888888888888888888888888887 4558888888877664 6678888888888888887678888
Q ss_pred HHHHH-HcCCChHhHhhhhhcC-cceeeccchhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHH----HH
Q 011162 302 VDFLY-EMGLSAESIGKVLTRC-PNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEF----FL 375 (492)
Q Consensus 302 v~fL~-~lG~s~~ei~~~v~~~-P~iL~~s~e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~f----L~ 375 (492)
++||+ ++|++++++..++.+. |.++..+. +.+++++.| ++
T Consensus 203 v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~----------------------------------~~l~~~~~~l~e~~~ 248 (343)
T 3mva_O 203 IEFLRSTFNLNSEELLVLICGPGAEILDLSN----------------------------------DYARRSYANIKEKLF 248 (343)
T ss_dssp HHHHHHHSCCCHHHHHHHHHTTTGGGGGCCT----------------------------------THHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHhcCChHHhhccH----------------------------------HHHHHHHHHHHHHHH
Confidence 88888 5888888877777653 34444442 344444444 44
Q ss_pred HcCCCHHHHHHHHhhccceeeecccccHHHHHHHHHHcCCChHHHhhcCcccccCcccccHhHHHHHHHhccccChh--h
Q 011162 376 ERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLN--Q 453 (492)
Q Consensus 376 ~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~lg~~~~l~--~ 453 (492)
++|++.+|+..|+.++|.++++| +++|++|++||.+||++.++|+++|++|+||+| ||+|||++|+..|.++.+. +
T Consensus 249 ~lG~s~~ev~~~v~~~P~il~~s-~~~l~~k~~fl~~mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~ 326 (343)
T 3mva_O 249 SLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLMEENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNIT 326 (343)
T ss_dssp TTTCCHHHHHHHHHTCGGGGGSC-HHHHHHHHHHHHTTTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGG
T ss_pred HcCCCHHHHHHHHHhCCchhccc-HHHHHHHHHHHHHcCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcch
Confidence 79999999999999999999999 578999999999999999999999999999999 9999999999999998888 9
Q ss_pred hhcCChHhHHHHHHH
Q 011162 454 VLSLSGSNFENVLKK 468 (492)
Q Consensus 454 ~L~~Sd~~F~~~~~~ 468 (492)
||++||++|+++|++
T Consensus 327 ~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 327 LLSWSKKRYEAKLKK 341 (343)
T ss_dssp GGGSCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHhc
Confidence 999999999999875
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.3e-40 Score=329.92 Aligned_cols=242 Identities=26% Similarity=0.413 Sum_probs=217.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHH
Q 011162 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLE 271 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~ 271 (492)
.++++||.++|++.++|.+.....|.+|+++++++++|+++||+++|++..+|++++.++|++|++++++ ++++++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 5789999999999999987666666669999988999999999999999999999999999999999965 999999999
Q ss_pred HhCCChhhHHHHHHhCCccccccchhhhhHHHHH-HHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCcch
Q 011162 272 NLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV 350 (492)
Q Consensus 272 ~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL-~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~~~ 350 (492)
++|++++++.+++.++|++++.+.+++.++++|| +++|++++++.+++.++|.+++++.+ +
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~----------------- 146 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-P----------------- 146 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-H-----------------
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-H-----------------
Confidence 9999999999999999999999999999999999 58999999999999999988888853 3
Q ss_pred hhhccccccccccchhhhHHHHHH-HHcCCCHHHHHHHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccc
Q 011162 351 LLQRCPQSLGCSIEANLKPVTEFF-LERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFG 428 (492)
Q Consensus 351 il~r~P~iL~~sle~~L~~r~~fL-~~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~ 428 (492)
++++++++ .++|++.+|+..|+.++|.++++| +++|++|++||. +||++.++|+++|++|+
T Consensus 147 ----------------~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~ 209 (270)
T 3m66_A 147 ----------------VKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFN 209 (270)
T ss_dssp ----------------HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGG
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhh
Confidence 34556655 479999999999999999999999 599999999998 89999999999999999
Q ss_pred cCcccccHhHHHHHHHhccc---------cChhhhhcCChHhHHHHHHHHH
Q 011162 429 YSLEERIKPRYARVKVHGVK---------LLLNQVLSLSGSNFENVLKKKI 470 (492)
Q Consensus 429 ~Sle~rIkpR~~~L~~lg~~---------~~l~~~L~~Sd~~F~~~~~~~~ 470 (492)
||+| ||+|||.+++++|.+ +++.+++.+||++|+++|++.+
T Consensus 210 ~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~ 259 (270)
T 3m66_A 210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKAS 259 (270)
T ss_dssp SCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSC
T ss_pred CCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCC
Confidence 9999 999999999998763 4577899999999999986544
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=8.9e-34 Score=290.16 Aligned_cols=277 Identities=18% Similarity=0.321 Sum_probs=243.0
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHH
Q 011162 190 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTF 269 (492)
Q Consensus 190 ~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~ 269 (492)
..+.+++||.++|++.+++ ++.+|.++..+++ +.++.++||+++|++.++|++++.++|++|.+++ +++.++++|
T Consensus 18 ~~~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f 92 (343)
T 3mva_O 18 KNEDLLKNLLTMGVDIDMA---RKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL 92 (343)
T ss_dssp --CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCHHHH---HHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence 3467899999999998775 4468999988884 7999999999999999999999999999999996 799999999
Q ss_pred HHHhCCChhhHHHHHHhCCc-cccccch-hhhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCC
Q 011162 270 LENLGVDKTQWAKVIQRFPA-VLTYSRQ-KVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVD 347 (492)
Q Consensus 270 L~~lGv~~~~i~kll~~~P~-iL~~s~e-kl~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~ 347 (492)
|+++|++++++.+++.++|+ +++.+.+ ++.++++||+++|++.+++.+++.++|++|+++++ ++++++++|+++|++
T Consensus 93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~~lgv~ 171 (343)
T 3mva_O 93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLS 171 (343)
T ss_dssp HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHHHhCCC
Confidence 99999999999999999999 5555554 79999999999999999999999999999999985 559999999987763
Q ss_pred ---------cchhhhccccccccccchhhhHHHHHHH-HcCCCHHHHHHHHhhc-cceeeecccccHHHHHHHHH----H
Q 011162 348 ---------VSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEEIGTMISRF-GALYTFSLTENLIPKWEFFL----T 412 (492)
Q Consensus 348 ---------~~~il~r~P~iL~~sle~~L~~r~~fL~-~~Gls~~ev~~mi~~~-P~lL~~sle~~L~~k~~fL~----~ 412 (492)
+..|+.++|.+++++ +++++++++||+ ++|++.+++..++.+. |.+++++ .+.++++++|+. +
T Consensus 172 ~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~~~ 249 (343)
T 3mva_O 172 LGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKLFS 249 (343)
T ss_dssp TTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHHHH
Confidence 346888999999999 899999999999 5999999999999885 5899999 589999998886 5
Q ss_pred cCCChHHH----hhcCcccccCcccccHhHHHHHHHhccccC----hhhhhcCChHhHHHHHHHHHHHhccCCCC
Q 011162 413 MDYDKSEL----VKFPQYFGYSLEERIKPRYARVKVHGVKLL----LNQVLSLSGSNFENVLKKKIEKALSDGGH 479 (492)
Q Consensus 413 ~G~~~~~i----~~~P~lL~~Sle~rIkpR~~~L~~lg~~~~----l~~~L~~Sd~~F~~~~~~~~~~l~~~~~~ 479 (492)
+|++.+++ .++|.+|.+|.| +|+++++|+..+|.... ..++|..|- ++++.||+.|.+.|++
T Consensus 250 lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~~~~~i~~~P~~l~~sl----eri~~R~~~L~~~g~~ 319 (343)
T 3mva_O 250 LGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENISISQIIENPRVLDSSI----STLKSRIKELVNAGCN 319 (343)
T ss_dssp TTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTCCHHHHHHSGGGGGSCH----HHHHHHHHHHHTTTCC
T ss_pred cCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCCCHHHHHhCCHHHhcCH----HHHHHHHHHHHHCCCC
Confidence 99999886 799999999987 59999999998766432 235677774 4899999999999974
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.98 E-value=2.7e-33 Score=277.32 Aligned_cols=224 Identities=20% Similarity=0.306 Sum_probs=196.3
Q ss_pred HhHhHHHHHHHhhhhhhhhHHHHHhcCCCCCCcccccCccCCCCCcCCCChHHHHhccccccCCCCCChHHHHHHHHhCC
Q 011162 123 IRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELG 202 (492)
Q Consensus 123 ~~davlafLe~lGls~~~~ia~~V~~~P~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~r~l~~~~~~~l~~~l~~L~~lG 202 (492)
|...+++||.++|++..+ |.......|.+|+ .+.+.++.|+++||.++|
T Consensus 4 ~~s~~l~~L~~lGv~~~~-i~k~p~~~p~lL~------------------------------~~~~~~l~~~l~fL~~lG 52 (270)
T 3m66_A 4 DHSETLQKLVLLGVDLSK-IEKHPEAANLLLR------------------------------LDFEKDIKQMLLFLKDVG 52 (270)
T ss_dssp HHHHHHHHHHHTTCCHHH-HTTSHHHHHHHHT------------------------------CCHHHHTHHHHHHHHHHT
T ss_pred cchHHHHHHHHcCCCHHH-Hhhccchhhhhhc------------------------------cChhhhHHHHHHHHHHcC
Confidence 345789999999999866 6333333333233 333456799999999999
Q ss_pred CCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHH-HHhCCChhhHH
Q 011162 203 MDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFL-ENLGVDKTQWA 281 (492)
Q Consensus 203 ~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L-~~lGv~~~~i~ 281 (492)
++.++|++++.++|.+|++++++ ++|+++||+++|++.++|++++.++|++|+++++ +++++++|| +++|++.+++.
T Consensus 53 ~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~ 130 (270)
T 3m66_A 53 IEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTR 130 (270)
T ss_dssp CCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHH
T ss_pred CCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999987 9999999999999999999999999999999995 799999999 58999999999
Q ss_pred HHHHhCCccccccchhhhhHHHHH-HHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH-hhCCCcchhhhcccccc
Q 011162 282 KVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDVSVLLQRCPQSL 359 (492)
Q Consensus 282 kll~~~P~iL~~s~ekl~~~v~fL-~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~-~lGl~~~~il~r~P~iL 359 (492)
+++.++|++++++.+++.++++++ +++||+.+++..++.++|++|++|. ++++++++||. +||++..+|+ ++|.+|
T Consensus 131 ~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i~-~~P~~l 208 (270)
T 3m66_A 131 DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHIIV-KFPQVF 208 (270)
T ss_dssp HHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHHH-HCGGGG
T ss_pred HHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHHH-hCchHh
Confidence 999999999999999999999986 5999999999999999999999996 79999999996 6999988765 579999
Q ss_pred ccccchhhhHHHHHHHH---cCCCHH
Q 011162 360 GCSIEANLKPVTEFFLE---RGFTVE 382 (492)
Q Consensus 360 ~~sle~~L~~r~~fL~~---~Gls~~ 382 (492)
+||+| +++||+.||+. .|+...
T Consensus 209 ~~Sle-ri~pR~~~l~~L~~~g~~~~ 233 (270)
T 3m66_A 209 NTRLF-KVKERHLFLTYLGRAQYDPA 233 (270)
T ss_dssp GSCHH-HHHHHHHHHHHHTCCCCCTT
T ss_pred hCCHH-HHHHHHHHHHHhhccCCCCC
Confidence 99997 99999888875 455433
No 5
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.97 E-value=7.4e-32 Score=273.22 Aligned_cols=199 Identities=22% Similarity=0.402 Sum_probs=161.3
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHH
Q 011162 227 IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY 306 (492)
Q Consensus 227 lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~ 306 (492)
++..+.+|.++|+++.+|+++++.+|+++. .++.+.+.+|..+|++.+++.++|.++|++|++|.+++.++++||+
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~ 121 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ 121 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHH
Confidence 455667777777777777777777777653 4566777777777777777777777777777777777777777777
Q ss_pred HcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHH-HcCCCHHHHH
Q 011162 307 EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEEIG 385 (492)
Q Consensus 307 ~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~-~~Gls~~ev~ 385 (492)
++|++.+++++++.++|++|+++.+ ++..++.+|. ++||+.+++.
T Consensus 122 ~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS~~ev~ 167 (335)
T 4fp9_B 122 KLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFTVQQVT 167 (335)
T ss_dssp HTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCCHHHHH
T ss_pred HcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCCHHHHH
Confidence 7777777777777777766666642 3455566775 6899999999
Q ss_pred HHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccccCcccccHhHHHHHHHhcc-------------ccCh
Q 011162 386 TMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGV-------------KLLL 451 (492)
Q Consensus 386 ~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~lg~-------------~~~l 451 (492)
.||.++|.+|++| +++|++|++||. +||++..+|++ |.+|+||++ ||+|||.||+.+|. +++|
T Consensus 168 ~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL 244 (335)
T 4fp9_B 168 KILHSCPSVLRED-LGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL 244 (335)
T ss_dssp HHHHHCGGGGTSC-HHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred HHHHhCChhhhCC-HHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence 9999999999999 689999999999 89999999997 999999998 99999999999987 2458
Q ss_pred hhhhcCChHhHHHHH
Q 011162 452 NQVLSLSGSNFENVL 466 (492)
Q Consensus 452 ~~~L~~Sd~~F~~~~ 466 (492)
.+++.+||++||.++
T Consensus 245 ~~il~~sd~~F~~~v 259 (335)
T 4fp9_B 245 KDILRVSEAEFLART 259 (335)
T ss_dssp HHHTTSCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHH
Confidence 999999999999885
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=234.06 Aligned_cols=181 Identities=18% Similarity=0.355 Sum_probs=170.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHH
Q 011162 191 LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFL 270 (492)
Q Consensus 191 l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L 270 (492)
+...+..|.++||++++|++++..+|.++. .++.+++.+|..+|++.++|++++.++|++|++++ ++++++++||
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~fL 120 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HHHHHHHHHH
Confidence 577889999999999999999999999874 35789999999999999999999999999999999 7899999999
Q ss_pred HHhCCChhhHHHHHHhCCccccccchhhhhHHHHHH-HcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH-hhCCCc
Q 011162 271 ENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDV 348 (492)
Q Consensus 271 ~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~-~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~-~lGl~~ 348 (492)
+++|++.+++.+++.++|++++++.+++..++.+|. ++||+.+++..||.++|.||.+|. ++|+++++||. .||++.
T Consensus 121 ~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl~~ 199 (335)
T 4fp9_B 121 QKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKH 199 (335)
T ss_dssp HHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCCCH
T ss_pred HHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999996 899999999999999999999995 69999999998 699999
Q ss_pred chhhhccccccccccchhhhHHHHHHHHcCCC
Q 011162 349 SVLLQRCPQSLGCSIEANLKPVTEFFLERGFT 380 (492)
Q Consensus 349 ~~il~r~P~iL~~sle~~L~~r~~fL~~~Gls 380 (492)
..|+. |.+|+||++ +|++|+.||+.+|.-
T Consensus 200 ~eIvk--P~~l~ySLe-RIkpRH~fL~~lG~~ 228 (335)
T 4fp9_B 200 PDIVK--SEYLQYSLT-KIKQRHIYLERLGRY 228 (335)
T ss_dssp HHHHH--TTGGGSCHH-HHHHHHHHHHHHTSC
T ss_pred HHccc--cchhhccHH-HHHHHHHHHHHcCCc
Confidence 99884 999999997 999999999999973
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.24 E-value=9.8e-11 Score=102.17 Aligned_cols=160 Identities=23% Similarity=0.431 Sum_probs=134.0
Q ss_pred HHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCc---chhhhccccccccccchhhhHHHHHHHH-
Q 011162 301 TVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV---SVLLQRCPQSLGCSIEANLKPVTEFFLE- 376 (492)
Q Consensus 301 ~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~---~~il~r~P~iL~~sle~~L~~r~~fL~~- 376 (492)
.+.-+--+|+.++-+.-++.+.|+++...+. .++.+..||+.+|+.. ..++.-||.++... ...+...+..|++
T Consensus 36 iisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmr-qqdindtvrllkek 113 (239)
T 4fzv_B 36 IISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEK 113 (239)
T ss_dssp HHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHh
Confidence 3444445788888888888888888888864 6788888888888764 34667788888887 3567778888884
Q ss_pred cCCCHHHHHHHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccccCcccccHhHHHHHHHhcc--------
Q 011162 377 RGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGV-------- 447 (492)
Q Consensus 377 ~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~lg~-------- 447 (492)
+=|+..++.+++..+|.++.-++ ..++.|+.|-. .||..+.+|++. .+|.||+. +|+.||-++..+|.
T Consensus 114 clftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkg 190 (239)
T 4fzv_B 114 CLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKG 190 (239)
T ss_dssp SCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSS
T ss_pred HHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccC
Confidence 78899999999999999999996 89999999987 999999999984 78999996 99999999999986
Q ss_pred -----ccChhhhhcCChHhHHHH
Q 011162 448 -----KLLLNQVLSLSGSNFENV 465 (492)
Q Consensus 448 -----~~~l~~~L~~Sd~~F~~~ 465 (492)
+..+++++..|+.+|..+
T Consensus 191 qtqipnpllkdilrvseaeflar 213 (239)
T 4fzv_B 191 QTQIPNPLLKDILRVSEAEFLAR 213 (239)
T ss_dssp CCSSCCCCHHHHHTSCHHHHHHH
T ss_pred CccCCChHHHHHHHHhHHHHHHH
Confidence 346889999999999877
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.66 E-value=1.1e-07 Score=82.90 Aligned_cols=149 Identities=19% Similarity=0.402 Sum_probs=124.8
Q ss_pred CHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHH
Q 011162 226 KIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL 305 (492)
Q Consensus 226 ~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL 305 (492)
.+-..+.-|.-+|++++-+.-++.+.|++|.... -.++.+-.+++.+|+..+.+.+++..+|.++++..+.+...+..|
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrll 110 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLL 110 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHH
Confidence 3444566667789999999999999999998776 678888999999999999999999999999999999999999999
Q ss_pred H-HcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH-hhCCCcchhhhccccccccccchhhhHHHHHHHHcCC
Q 011162 306 Y-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGF 379 (492)
Q Consensus 306 ~-~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~-~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gl 379 (492)
+ .+-++..++.+++..||.++..+. ..++-++.|.- .||+.-.+|+. ...+.||+ ..++.|.-||..+|-
T Consensus 111 kekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk--seylqysl-tkikqrhiylerlgr 182 (239)
T 4fzv_B 111 KEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK--SEYLQYSL-TKIKQRHIYLERLGR 182 (239)
T ss_dssp HHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH--TTGGGSCH-HHHHHHHHHHHHHTC
T ss_pred HHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH--HHHHHHHH-HHHHHHHhHHHHhcc
Confidence 8 688999999999999999998886 47887777765 78887666654 34677776 678888888877774
No 9
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=87.99 E-value=5.5 Score=43.22 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=17.7
Q ss_pred HHHHHHHHHHH----HcCCChHHHhhhhcc
Q 011162 67 EAKAVLTLFLK----KQGLSKGVAARTINK 92 (492)
Q Consensus 67 ~a~~~~~~~l~----t~GLt~~~A~~~s~~ 92 (492)
.|-.+|..++. ..|||++|-.+|+.|
T Consensus 203 qAL~av~~l~~~L~~~~~ls~~qVvaIAsn 232 (1047)
T 3ugm_A 203 QALETVQRLLPVLCQAHGLTPAQVVAIASH 232 (1047)
T ss_dssp HHHHHHHHHSHHHHHSSCCCHHHHTTTTTS
T ss_pred hHHHHHHHHHHHHhhhcCCCHHHHHHHhhc
Confidence 45555555553 368999998888775
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=87.81 E-value=0.95 Score=32.66 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=31.5
Q ss_pred hhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHHHcCCCHHHHHHHHhh
Q 011162 331 EEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISR 390 (492)
Q Consensus 331 e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gls~~ev~~mi~~ 390 (492)
++.+...+.||+. |.+-..+ +..++.||++.|++.+||..++.+
T Consensus 10 e~li~~Av~FL~d------------p~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 10 EPLIATAVKFLQN------------SRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHC------------TTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------------hhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3456666666653 4444333 556899999999999999988765
No 11
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=85.84 E-value=1.1 Score=45.45 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=32.6
Q ss_pred CChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCC
Q 011162 189 GDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPK 241 (492)
Q Consensus 189 ~~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~ 241 (492)
......++.|.+.||+++++.+.++... +++..-++||.+ |++.
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT-SSTT
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh-CCCc
Confidence 3467889999999999999999988742 244556788853 4543
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=82.02 E-value=1.8 Score=32.78 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=32.8
Q ss_pred hhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHHHcCCCHHHHHHHHhhcc
Q 011162 331 EEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFG 392 (492)
Q Consensus 331 e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gls~~ev~~mi~~~P 392 (492)
++.+...+.||+. |.+-..+ +..++.||++.|++.+||..++.+..
T Consensus 15 e~li~~Av~FLqd------------p~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra~ 60 (70)
T 2w84_A 15 EPLIATAVKFLQN------------SRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQSG 60 (70)
T ss_dssp HHHHHHHHHHHCS------------TTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC------------hhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHcc
Confidence 3456666666653 5444433 55689999999999999999888743
No 13
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=77.57 E-value=30 Score=28.87 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHH
Q 011162 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 235 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~ 235 (492)
+..+..|.+.||+...+.+.+.... ++++..++||.
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~ 44 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLF 44 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHH
Confidence 3456777778888888777766531 24566666665
No 14
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=73.85 E-value=24 Score=38.43 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=12.4
Q ss_pred HcCCChHHHhhhhcc
Q 011162 78 KQGLSKGVAARTINK 92 (492)
Q Consensus 78 t~GLt~~~A~~~s~~ 92 (492)
..|||++|-.+|+.|
T Consensus 252 ~~gls~~qvVaIAsn 266 (1047)
T 3ugm_A 252 AHGLPPDQVVAIASN 266 (1047)
T ss_dssp HSCCCHHHHHHHHSS
T ss_pred ccCCCHHHHHHHHhc
Confidence 579999999988775
No 15
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=66.41 E-value=37 Score=34.06 Aligned_cols=112 Identities=14% Similarity=0.214 Sum_probs=55.0
Q ss_pred hCCCCHHHHHHHHHhCCceeec-CcCCCHHHHHHHHHh-CCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHH-hCCC
Q 011162 200 ELGMDLEKIKLITRRFPAFSYY-SLEGKIKPVVEFLLD-LGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLEN-LGVD 276 (492)
Q Consensus 200 ~lG~s~~~i~~ll~~~P~lL~~-~le~~lkp~v~fL~~-~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~-lGv~ 276 (492)
.+||+.++|..|-.... +. -+ +.+..-.--|++ +|++.++|..|-..+---- -+ +.++...--|+. .|++
T Consensus 241 ~~gls~aqVVaIAsn~G---GkQAL-eaV~~llP~L~~~~gls~~qVVaIAsN~GGkQ--AL-eaV~~l~p~Lr~~~~ls 313 (463)
T 4hpz_A 241 DHGLTPQQVVAIASNIG---GKQAL-ETVQRLLPVLCQDHGLTPDQVVAIASNDGGKQ--AL-ETVQRLLPVLCQDHGLT 313 (463)
T ss_dssp HSCCCHHHHHHHHSSTT---HHHHH-HHHHHHHHHHHHTTCCCHHHHHHHHTSTTHHH--HH-HHHHHHHHHHHHHHCCC
T ss_pred hccCCHHHHHHHhcccc---hHHHH-HHHHhhchhhhhccCCCHHHhhhhhcCccHHH--HH-HHHHHHhHHHHhhcCCC
Confidence 47888888887643211 00 01 122223333444 7888888877754321000 01 233444444443 6888
Q ss_pred hhhHHHHHHhCCccccccchhhhhHHHHHH-HcCCChHhHhhhhh
Q 011162 277 KTQWAKVIQRFPAVLTYSRQKVKQTVDFLY-EMGLSAESIGKVLT 320 (492)
Q Consensus 277 ~~~i~kll~~~P~iL~~s~ekl~~~v~fL~-~lG~s~~ei~~~v~ 320 (492)
.+++..+-...-. -.-.+.+..-.-.|+ ..|++.++|..+-.
T Consensus 314 ~~qVVaIAsN~GG--kQALeaV~~llp~Lr~~~~ls~~qVvaIAs 356 (463)
T 4hpz_A 314 PEQVVAIASNGGG--KQALETVQRLLPVLCQAHGLTPDQVVAIAS 356 (463)
T ss_dssp HHHHHHHHSSTTH--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHT
T ss_pred HHHhhhhhcCcch--HHHHHHHHHhhhhcchhccCCHHHhHhhhh
Confidence 8887654221100 000223444444555 37888888876654
No 16
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=63.25 E-value=7.7 Score=27.87 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=22.9
Q ss_pred hCCccccccchhhhhHHHHHHHcCCChHhHhhhhhc
Q 011162 286 RFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTR 321 (492)
Q Consensus 286 ~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei~~~v~~ 321 (492)
..|.|-..+ +..+++||++-|++.+||..++.+
T Consensus 21 ~dp~V~~sp---~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 21 QNSRVRQSP---LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HCTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChhhhcCC---HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 355554432 667788888888888888777654
No 17
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=58.70 E-value=24 Score=25.00 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=32.0
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCC
Q 011162 190 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGI 239 (492)
Q Consensus 190 ~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gl 239 (492)
.+...++-|.++|++++++.+.+... ++++.---.+|.++.+
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a--------~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIA--------QNNVEVARSILREFAF 51 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHhcC
Confidence 45678999999999999999988763 3566666677777655
No 18
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=52.64 E-value=19 Score=25.68 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhccceeeecccccHHHHHHHHHHcCCCh
Q 011162 371 TEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDK 417 (492)
Q Consensus 371 ~~fL~~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~~~G~~~ 417 (492)
++-|.++||+.+-+...++.-. .+.|++.+++|.+|+++.
T Consensus 13 lq~L~eMGFd~erae~Alk~Tg-------~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQTG-------SRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT-------SCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCCHHHHHHHHHHhC-------cccHHHHHHHHHHhcCCC
Confidence 5677788999887776666422 456899999998888753
No 19
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=50.49 E-value=77 Score=26.33 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhhccceeeecccccHHHHHHHHH
Q 011162 370 VTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL 411 (492)
Q Consensus 370 r~~fL~~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~ 411 (492)
.+.-|.++||+.+.+...++.+ ..++..-+++|.
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~ 112 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM 112 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 4677788999999988777755 246666677776
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.50 E-value=45 Score=23.01 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHh
Q 011162 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 236 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~ 236 (492)
...++.|.+.||+.++....++.. ..++..-+++|.+
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTT--------TSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 567888999999999999988764 2356677788766
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=46.44 E-value=18 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=23.3
Q ss_pred hCCccccccchhhhhHHHHHHHcCCChHhHhhhhhc
Q 011162 286 RFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTR 321 (492)
Q Consensus 286 ~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei~~~v~~ 321 (492)
++|.|-..+ +..+++||++-|++.+||..++.+
T Consensus 26 qdp~V~~sp---~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 26 QNSRVRQSP---LATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp CSTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChhhhhCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 355554432 667788888888888888777765
No 22
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=46.03 E-value=25 Score=25.84 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCChHhHh
Q 011162 269 FLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIG 316 (492)
Q Consensus 269 ~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei~ 316 (492)
..+..||+...+.+++...+.-...+.+......+..+++|+.+....
T Consensus 6 iA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a 53 (65)
T 1uxc_A 6 IARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVA 53 (65)
T ss_dssp HHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC---
T ss_pred HHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHH
Confidence 445567777777777765552122344445555555667777665544
No 23
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=45.54 E-value=88 Score=23.01 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhhhhhHHHH
Q 011162 67 EAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDL 145 (492)
Q Consensus 67 ~a~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~~~~ia~~ 145 (492)
.--..+..+-...|+|..+.++...-|+..++++-. |+ ..| ..+.+..+.+.+|.+..+-+...
T Consensus 14 ~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~------------g~--~~~-~~~~l~~l~~~l~~~~~~l~~~~ 77 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTEN------------AE--RRL-DVIEFMDFCRGIGTDPYALLSKL 77 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT------------TS--SCC-CHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC------------CC--CCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 334556666678999999999988888888887766 21 223 34566778888999875533333
No 24
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=44.11 E-value=1.6e+02 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcc
Q 011162 370 VTEFFLERGFTVEEIGTMISRFG 392 (492)
Q Consensus 370 r~~fL~~~Gls~~ev~~mi~~~P 392 (492)
.+.||...||+.+.|...+...|
T Consensus 138 ~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 138 AADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHHHCCCCHHHHHHHHhcCc
Confidence 36889999999999987776544
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=43.35 E-value=57 Score=22.92 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=30.1
Q ss_pred hHHHHHHHHhCCC-CHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCC
Q 011162 191 LRPQILYLIELGM-DLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 238 (492)
Q Consensus 191 l~~~l~~L~~lG~-s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~G 238 (492)
....++.|.+.|| +......++... .+++..-+++|.+.+
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHcC
Confidence 4667889999999 888877777653 246778888887754
No 26
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=40.73 E-value=35 Score=34.23 Aligned_cols=43 Identities=12% Similarity=0.282 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCCh
Q 011162 226 KIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDK 277 (492)
Q Consensus 226 ~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~ 277 (492)
.....|.-|.++|+++.++.+.+...- .+....++||-+ |++.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT-SSTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh-CCCc
Confidence 467889999999999999999987533 245567777732 4443
No 27
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.04 E-value=34 Score=23.69 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=25.9
Q ss_pred hhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHh
Q 011162 298 VKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 343 (492)
Q Consensus 298 l~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~ 343 (492)
....++-|.++||+++++..++..+ ..++++.++||.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTT--------TSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 4556777888888888888777654 1256666777654
No 28
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.32 E-value=88 Score=22.22 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.1
Q ss_pred CChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCC
Q 011162 189 GDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGI 239 (492)
Q Consensus 189 ~~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gl 239 (492)
......++.|.++||+++++.+.+... +++++---.+|+++..
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a--------~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIA--------HNNIEMAKNILREFSG 49 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHh--------cCCHHHHHHHHHHhcc
Confidence 345677999999999999999988663 3566666677776643
No 29
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=37.48 E-value=51 Score=24.36 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHH
Q 011162 59 TLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSR 103 (492)
Q Consensus 59 ~~~~~~~~~a~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~ 103 (492)
.-+...+++.|.-+.+++.+.|++-+.+.+.|.. |+.|.-.
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQe----LD~LIn~ 44 (64)
T 2c0s_A 4 TKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQE----LDRLLNL 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH----HHHHHHH
Confidence 3456789999999999999999999999999999 8888774
No 30
>4i16_A Caspase recruitment domain-containing protein 11; CBM complex, helix bundle, scaffold protein, BCL10 and MALT1 phosphorylation, signaling protein; 1.75A {Mus musculus}
Probab=37.21 E-value=75 Score=25.34 Aligned_cols=59 Identities=24% Similarity=0.225 Sum_probs=38.1
Q ss_pred HHHHHHHcC-CChHHHhhhhcc-----ChHHHHHHHHHhHhhhhhcccccccccchH-HhHhHHHHHHHhhhhhhhhHHH
Q 011162 72 LTLFLKKQG-LSKGVAARTINK-----SDLFIDHLVSRLHSVHKSRYLVGRELTTLE-IRDALTPYLESLLEEYGNVLVD 144 (492)
Q Consensus 72 ~~~~l~t~G-Lt~~~A~~~s~~-----s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~-~~davlafLe~lGls~~~~ia~ 144 (492)
+..|+..|| ||..+...|... +-.=..+|.+-+ +. .|+|..+|+++|.....+ ++.
T Consensus 25 l~~yL~q~~VLt~~deEeI~~~~~~~t~~~ra~~LLDiL----------------~~rG~~a~~aFlesL~~~yp~-L~~ 87 (93)
T 4i16_A 25 LTPYLRQCKVIDEQDEDEVLNAPMLPSKINRAGRLLDIL----------------HTKGQRGYVVFLESLEFYYPE-LYK 87 (93)
T ss_dssp HHHHHHHTTSSCHHHHHHHHSSCCCSCCTTTTHHHHHHH----------------TTSHHHHHHHHHHHHHHHCHH-HHH
T ss_pred HHHHHHHcCCCCHHHHHHHhcCccccCHHHHHHHHHHHH----------------HhcCchHHHHHHHHHHHHCHH-HHH
Confidence 677777666 788888887431 111123444422 22 788999999999877756 777
Q ss_pred HHh
Q 011162 145 LVE 147 (492)
Q Consensus 145 ~V~ 147 (492)
.|.
T Consensus 88 llt 90 (93)
T 4i16_A 88 LVT 90 (93)
T ss_dssp HHH
T ss_pred Hcc
Confidence 654
No 31
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.54 E-value=62 Score=23.09 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=34.3
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCC
Q 011162 190 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPK 241 (492)
Q Consensus 190 ~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~ 241 (492)
..+..++-|.+.||+.+.....++.- . .+-|++.++||...+++.
T Consensus 8 vn~qmlq~L~eMGFd~erae~Alk~T------g-~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 8 VNRQMLQELVNAGCDQEMAGRALKQT------G-SRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHHHHH------T-SCCHHHHHHHHHHHSCSC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh------C-cccHHHHHHHHHHhcCCC
Confidence 44666888999999999888887763 1 246889999998877654
No 32
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.45 E-value=72 Score=22.21 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhhh
Q 011162 71 VLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYG 139 (492)
Q Consensus 71 ~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~~ 139 (492)
.+..+....|+|..+.++...-|+..++++.. |+ ..| ..+.+..+.+.+|++..
T Consensus 9 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~------------g~--~~~-~~~~l~~i~~~l~~~~~ 62 (68)
T 2r1j_L 9 RIRARRKKLKIRQAALGKMVGVSNVAISQWER------------SE--TEP-NGENLLALSKALQCSPD 62 (68)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT------------TS--SCC-BHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHc------------CC--CCC-CHHHHHHHHHHhCCCHH
Confidence 45556678899999999988888888887766 21 223 33455666777887753
No 33
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=35.37 E-value=37 Score=25.73 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHH-----HHHHHhhhhhhhhHHHHHh
Q 011162 74 LFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALT-----PYLESLLEEYGNVLVDLVE 147 (492)
Q Consensus 74 ~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davl-----afLe~lGls~~~~ia~~V~ 147 (492)
+|.-.||+....|.+-|.+ |. +. ....+++ ..|..||+.-|| |-+|..
T Consensus 7 ~FFl~aGv~~~~c~rYA~~---F~---~~-------------------ri~e~mL~Dl~~~~Lr~LGi~eGD-IIrVmk 59 (72)
T 3idw_A 7 EFFLNCGVDVSNCQRYTIN---FD---RE-------------------QLTEDMMPDINNSMLRTLGLREGD-IVRVMK 59 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHH---HH---HT-------------------TCCGGGGGGCCHHHHHHTTCCHHH-HHHHHH
T ss_pred HHHHHcCCChHHHHHHHHH---HH---Hc-------------------cCCHHHHhhCCHHHHHHcCCchhh-HHHHHH
Confidence 5667899999999988776 21 11 1222333 588999999999 655543
No 34
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=34.92 E-value=57 Score=23.10 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=13.5
Q ss_pred hhhHHHHHHHcCCChHhHhhhhh
Q 011162 298 VKQTVDFLYEMGLSAESIGKVLT 320 (492)
Q Consensus 298 l~~~v~fL~~lG~s~~ei~~~v~ 320 (492)
+...|+-|-++|++++++.+++.
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 34555666666666666655554
No 35
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=33.25 E-value=40 Score=23.73 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHcCC-ChHhHhhhhhcCcceeeccchhhhhhhHHHHHh
Q 011162 297 KVKQTVDFLYEMGL-SAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 343 (492)
Q Consensus 297 kl~~~v~fL~~lG~-s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~ 343 (492)
.....++-|.++|| +++....++..+ ..+++..+++|.+
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 35566666777777 555555544432 1245566666543
No 36
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=31.96 E-value=99 Score=21.54 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=28.4
Q ss_pred CCChHHHHHHHHhCCC-CHHHHHHHHHhCCceeecCcCCCHHHHHHHHH
Q 011162 188 SGDLRPQILYLIELGM-DLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 235 (492)
Q Consensus 188 ~~~l~~~l~~L~~lG~-s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~ 235 (492)
.......++.|.+.|| +.+...+++... ..++..-+++|.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gn~e~A~e~L~ 49 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIAT--------GGDINAAIERLL 49 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 4455778999999999 887777776653 235666777764
No 37
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=31.93 E-value=60 Score=28.21 Aligned_cols=82 Identities=12% Similarity=0.222 Sum_probs=50.5
Q ss_pred CCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCCh---Hh
Q 011162 238 GIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSA---ES 314 (492)
Q Consensus 238 Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~---~e 314 (492)
|.|.+... .-...|..+..++ +++...+.-|..-|+++.+|+-++.-...|-....-.=....++|++-|+.+ +|
T Consensus 12 G~S~S~~P-~~~~~P~W~~~~~-eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPED 89 (153)
T 2xzm_O 12 GISGSALP-FKRRSPKWLHMTP-STVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPED 89 (153)
T ss_dssp CCCCCCCC-SCCSCCSSCCCCH-HHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHH
T ss_pred CccCCCCC-CCCCCCccccCCH-HHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHH
Confidence 45544443 1234677777777 6788888878788999999987776543332221111133467888878764 56
Q ss_pred Hhhhhhc
Q 011162 315 IGKVLTR 321 (492)
Q Consensus 315 i~~~v~~ 321 (492)
+..++.+
T Consensus 90 L~~LikK 96 (153)
T 2xzm_O 90 LYFLIKK 96 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 38
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=30.72 E-value=59 Score=23.84 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHH
Q 011162 60 LLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSR 103 (492)
Q Consensus 60 ~~~~~~~~a~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~ 103 (492)
-+...+++.|.-+.+++...|++-+...+.|.. |+.|.-.
T Consensus 5 ~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQe----LD~LIn~ 44 (62)
T 2bzb_A 5 QLKNKIENKKKELIQLVARHGLDHDKVLLFSRD----LDKLINK 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH----HHHHHHH
Confidence 356788999999999999999999999999999 8888773
No 39
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.44 E-value=1e+02 Score=23.34 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhC
Q 011162 188 SGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 237 (492)
Q Consensus 188 ~~~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~ 237 (492)
.......|+.|.++||+.+++...+... ..++..-++||.+-
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQ 67 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 3445788999999999999999998764 24677888888763
No 40
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.99 E-value=95 Score=20.43 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHh
Q 011162 193 PQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 236 (492)
Q Consensus 193 ~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~ 236 (492)
..++-|.+.||+.++..+.+... .+++..-++||.+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC--------NWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CcCHHHHHHHHHc
Confidence 45788899999999988887663 2456667777653
No 41
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.33 E-value=2.1e+02 Score=25.15 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred cCCccCchHHHHHHHHHhC-CChhhHHHHHHhCCcccc-ccchhhhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhh
Q 011162 256 GISLSENLIPTMTFLENLG-VDKTQWAKVIQRFPAVLT-YSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEK 333 (492)
Q Consensus 256 ~~s~e~~l~~~v~~L~~lG-v~~~~i~kll~~~P~iL~-~s~ekl~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~ 333 (492)
+++. +.+...+++|.+.| +++...+..+.+.-.-.. .++.+|. .-|+.-|++.+.|..++...+ ++.
T Consensus 46 g~~~-~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~---~eL~~KGI~~~~I~~al~~~~-------~~d 114 (177)
T 3e3v_A 46 DIHE-DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIK---LNLSKKGIDDNIAEDALILYT-------DKL 114 (177)
T ss_dssp TCCH-HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHH---HHHHTTTCCHHHHHHHHTTSC-------HHH
T ss_pred CCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHH---HHHHHcCCCHHHHHHHHHhCC-------chh
Q ss_pred hhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHHHcCCCHHHHHHHHhh
Q 011162 334 LRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISR 390 (492)
Q Consensus 334 L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gls~~ev~~mi~~ 390 (492)
......-+.+ .+++..-..+....-+..+.||...||+.+.+...+..
T Consensus 115 e~e~a~~l~~---------Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 115 QVEKGVTLAE---------KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHHH---------HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
No 42
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=29.31 E-value=1.7e+02 Score=21.39 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhhhh
Q 011162 69 KAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGN 140 (492)
Q Consensus 69 ~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~~~ 140 (492)
...+..+....|+|..+.++...-|+..++++.. |+ ..|+ .+.+..+.+-+|.+..+
T Consensus 14 ~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~------------g~--~~~~-~~~~~~ia~~l~v~~~~ 70 (80)
T 3kz3_A 14 KAIWEKKKNELGLSYESVADKMGMGQSAVAALFN------------GI--NALN-AYNAALLAKILKVSVEE 70 (80)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT------------TS--SCCC-HHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHc------------CC--CCCC-HHHHHHHHHHhCCCHHH
Confidence 3445666668999999999888888777887766 22 2232 35666777788888644
No 43
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.73 E-value=53 Score=24.07 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=23.6
Q ss_pred hHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHh
Q 011162 300 QTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 343 (492)
Q Consensus 300 ~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~ 343 (492)
..|+-|.++||++++...++..+ ..+++..++||.+
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 45677777888888777666643 2356667777753
No 44
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=28.68 E-value=1e+02 Score=21.15 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=35.0
Q ss_pred HHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhh
Q 011162 72 LTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEY 138 (492)
Q Consensus 72 ~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~ 138 (492)
+..+....|+|..+.++...-|+..++++.. |+ ..| ..+.+..+.+.+|.+.
T Consensus 6 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~------------g~--~~~-~~~~l~~i~~~l~~~~ 57 (66)
T 2xi8_A 6 LKLIREKKKISQSELAALLEVSRQTINGIEK------------NK--YNP-SLQLALKIAYYLNTPL 57 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT------------TS--CCC-CHHHHHHHHHHTTSCH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc------------CC--CCC-CHHHHHHHHHHHCcCH
Confidence 3445668999999999888888877777666 21 123 2344556667777775
No 45
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.05 E-value=38 Score=25.77 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=24.8
Q ss_pred hhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH
Q 011162 298 VKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 342 (492)
Q Consensus 298 l~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~ 342 (492)
....|+-|.++||+++++..++..+ ..+++..++||.
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll 65 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILM 65 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 4566777777888888777776643 235666677765
No 46
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.64 E-value=2.2e+02 Score=25.95 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred cCCccCchHHHHHHHHHhC-CChhhHHHHHHhCCcc-ccccchhhhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhh
Q 011162 256 GISLSENLIPTMTFLENLG-VDKTQWAKVIQRFPAV-LTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEK 333 (492)
Q Consensus 256 ~~s~e~~l~~~v~~L~~lG-v~~~~i~kll~~~P~i-L~~s~ekl~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~ 333 (492)
+++. +.+...+++|.+.| +++...+..+.+.-.- -..++.+|. .-|+.-|++.+.|..++... +.++.
T Consensus 89 g~~~-e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~---~eL~~KGI~~~~I~~al~~~------~~~~e 158 (221)
T 3d5l_A 89 DTPE-EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIR---QHLRQKGIGESDIDDALTQF------TPEVQ 158 (221)
T ss_dssp TCCH-HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHTTCCHHHHHHHGGGC------CHHHH
T ss_pred CCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHH---HHHHHcCCCHHHHHHHHHhC------CHHHH
Q ss_pred hhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHHHcCCCHHHHHHHHhhc
Q 011162 334 LRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF 391 (492)
Q Consensus 334 L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gls~~ev~~mi~~~ 391 (492)
.......+. .+++..-..+....-+..+.||...||+.+.+..++...
T Consensus 159 ~e~a~~l~~----------Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 159 AELAKKLAL----------KLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHHHHHH----------HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHHHHHH----------HHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhc
No 47
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=27.01 E-value=59 Score=28.22 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=49.7
Q ss_pred CCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCCh---Hh
Q 011162 238 GIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSA---ES 314 (492)
Q Consensus 238 Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~---~e 314 (492)
|.|.+...- -...|..+..++ +++...+--|..-|+++.+|+-++.-...|-....-.=....++|++-|+.+ +|
T Consensus 10 G~S~S~~P~-~~~~P~W~~~~~-eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPED 87 (151)
T 3u5c_N 10 GISSSAIPY-SRNAPAWFKLSS-ESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPED 87 (151)
T ss_dssp CCCCCCCCS-CCSCCSSCCSCH-HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHH
T ss_pred CCCCCCCCC-CCCCCCCcCCCH-HHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHH
Confidence 455444431 134677787787 6788888888788999999987776532222211111123457888878764 56
Q ss_pred Hhhhhhc
Q 011162 315 IGKVLTR 321 (492)
Q Consensus 315 i~~~v~~ 321 (492)
+..++.+
T Consensus 88 L~~LikK 94 (151)
T 3u5c_N 88 LYYLIKK 94 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 48
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.17 E-value=1.5e+02 Score=21.61 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhC
Q 011162 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 237 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~ 237 (492)
...|+.|.+.||+.++..+++... .+++..-++||.+-
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 456888999999999998887764 24677788888754
No 49
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=24.24 E-value=2e+02 Score=21.39 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhh
Q 011162 70 AVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEY 138 (492)
Q Consensus 70 ~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~ 138 (492)
..+..+-...|||..+.++...-|+..++++-. +-..| ..+.+..+.+-+|.+.
T Consensus 17 ~~l~~~R~~~gltq~elA~~~gis~~~is~~E~--------------G~~~p-~~~~l~~ia~~l~v~~ 70 (86)
T 3eus_A 17 QRLRQARLDAGLTQADLAERLDKPQSFVAKVET--------------RERRL-DVIEFAKWMAACEGLD 70 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT--------------TSSCC-BHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC--------------CCCCC-CHHHHHHHHHHcCCCc
Confidence 345555568999999999988888888888776 22223 3455667778888763
No 50
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=23.28 E-value=1.5e+02 Score=21.00 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhh
Q 011162 71 VLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEY 138 (492)
Q Consensus 71 ~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~ 138 (492)
.+..+....|+|..+.++...-|+..++++.. |+ ..| ..+.+..+.+.+|.+.
T Consensus 9 ~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~------------g~--~~~-~~~~l~~ia~~l~~~~ 61 (76)
T 1adr_A 9 RIRARRKKLKIRQAALGKMVGVSNVAISQWER------------SE--TEP-NGENLLALSKALQCSP 61 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT------------TS--SCC-CHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc------------CC--CCC-CHHHHHHHHHHHCcCH
Confidence 34556667899999999988888878877766 21 123 2344566777788875
No 51
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.93 E-value=1.3e+02 Score=21.41 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=8.5
Q ss_pred hhhhHHHHHHHcCCCh
Q 011162 297 KVKQTVDFLYEMGLSA 312 (492)
Q Consensus 297 kl~~~v~fL~~lG~s~ 312 (492)
.-...++-|.++||.+
T Consensus 8 ~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCD 23 (54)
T ss_dssp THHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHcCCCc
Confidence 3444555555666633
No 52
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=22.53 E-value=1.6e+02 Score=18.72 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHH
Q 011162 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFL 234 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL 234 (492)
...++.|.+.|++.++....+... ..++..-+++|
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~--------~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA--------NGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHH
Confidence 456788888899988888876653 23455555554
No 53
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.28 E-value=1.4e+02 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.8
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhC
Q 011162 191 LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 237 (492)
Q Consensus 191 l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~ 237 (492)
-...++-|.++||+.+++..+++.. ..++..-+++|.+.
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~sh 67 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 3678999999999999999998874 24588888998763
No 54
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=22.24 E-value=62 Score=23.82 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=20.0
Q ss_pred HHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCChHhH
Q 011162 269 FLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESI 315 (492)
Q Consensus 269 ~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei 315 (492)
..+..||+...+.+++...+. .+.+......+..+++|+.+...
T Consensus 15 iA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~~ 58 (67)
T 2l8n_A 15 VALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQPM 58 (67)
T ss_dssp HHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC---
T ss_pred HHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccHH
Confidence 334456666666555544332 23333344444455566655443
No 55
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.74 E-value=88 Score=23.56 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHh
Q 011162 299 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 343 (492)
Q Consensus 299 ~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~ 343 (492)
...++-|.++||++++..+++..+ ..+++..++||.+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
No 56
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.56 E-value=1.6e+02 Score=20.39 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhh
Q 011162 71 VLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEY 138 (492)
Q Consensus 71 ~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~ 138 (492)
.+..+....|+|..+.++...-|+..++++.. |+ ..|.. + +..+.+.+|.+.
T Consensus 5 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~------------g~--~~~~~-~-l~~la~~l~~~~ 56 (69)
T 1r69_A 5 RVKSKRIQLGLNQAELAQKVGTTQQSIEQLEN------------GK--TKRPR-F-LPELASALGVSV 56 (69)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT------------TS--CSSCT-T-HHHHHHHTTCCH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc------------CC--CCCch-H-HHHHHHHHCcCH
Confidence 35566778999999999988888888877766 22 11221 2 566777788875
No 57
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=21.19 E-value=1.8e+02 Score=20.64 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=35.9
Q ss_pred HHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhhhh
Q 011162 72 LTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGN 140 (492)
Q Consensus 72 ~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~~~ 140 (492)
+..+....|+|..+.++...-|+..++++.. |+. .| ..+.+..+.+.+|++..+
T Consensus 15 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~------------g~~--~~-~~~~l~~ia~~l~~~~~~ 68 (76)
T 3bs3_A 15 IKVVLAEKQRTNRWLAEQMGKSENTISRWCS------------NKS--QP-SLDMLVKVAELLNVDPRQ 68 (76)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT------------TSS--CC-CHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc------------CCC--CC-CHHHHHHHHHHHCcCHHH
Confidence 4455667899999999888888777777666 221 12 234455666777877533
No 58
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.64 E-value=87 Score=24.39 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=25.7
Q ss_pred hhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHh-hC
Q 011162 299 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS-LG 345 (492)
Q Consensus 299 ~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~-lG 345 (492)
...|+-|.++||+++++..++..+ ..++++.++||.+ .|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 456677777888888777776643 2346677777764 44
No 59
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=20.18 E-value=79 Score=27.21 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCChHHHhhhhc--cChHHHHHHHHHhHhhhhhcccccccccc------hHHhHh---HHHHHHHhhhh
Q 011162 69 KAVLTLFLKKQGLSKGVAARTIN--KSDLFIDHLVSRLHSVHKSRYLVGRELTT------LEIRDA---LTPYLESLLEE 137 (492)
Q Consensus 69 ~~~~~~~l~t~GLt~~~A~~~s~--~s~~~l~~l~s~~~~~~~~~~~~~~~l~~------~~~~da---vlafLe~lGls 137 (492)
+..++.++.+.=||.+++..+-. +.+.=...|.+.|+. +|++.+. -.-+|| +.|||+.+|++
T Consensus 44 ~~LLD~LL~~gvLs~EE~EiV~~~~T~~dKaRrLLDlV~s-------KGe~a~e~Ll~~Lqql~day~dl~pwl~ei~~~ 116 (144)
T 4e9m_A 44 QCLVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQS-------KGEEVSEFFLYLLQQLADAYVDLRPWLLEIGFS 116 (144)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHTSSSHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHhccCChHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHccccccchhHHHHHhCCC
Confidence 67799999999999999976632 111112333333222 1221110 124555 45899999999
Q ss_pred hhhhHH--HHHhcCC
Q 011162 138 YGNVLV--DLVENFP 150 (492)
Q Consensus 138 ~~~~ia--~~V~~~P 150 (492)
+.+.|. .||-.||
T Consensus 117 p~~~~~~~~v~ntdp 131 (144)
T 4e9m_A 117 PSLLTQSKVVVNTDP 131 (144)
T ss_dssp ---------------
T ss_pred cHHHhcccceecCCc
Confidence 877552 2344455
Done!