BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011163
         (492 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsb)
 pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsc)
 pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsd)
 pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Dgm
          Length = 485

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/486 (22%), Positives = 185/486 (38%), Gaps = 44/486 (9%)

Query: 9   FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKA 68
             ++H+C+EM PL+  G LA  +  L  A    G    V+LP +  +   GV   + +  
Sbjct: 1   MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIR-RGVTDAQVVSR 59

Query: 69  ECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY----SSFFNRESVYGYSDDFERFTYFS 124
                F G +    +  G  +G+G+  I   H      S ++  +++ Y+D+  RF    
Sbjct: 60  R--DTFAGHI---TLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLG 114

Query: 125 --RASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIXXX--XXXXXXXX 180
              A +   +    +PDV+H H+W   +  P +      +G     +             
Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAY---LAARGRPAKSVFTVHNLAYQGMFY 170

Query: 181 XEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS 240
             H + + L    P        L+ N +   ++ LK G+ Y++ +  VS  +++      
Sbjct: 171 AHHMNDIQL----PWSFFNIHGLEFNGQ---ISFLKAGLYYADHITAVSPTYAREITEPQ 223

Query: 241 LSHGLESTLAIH--QDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQ 298
            ++G+E  L     + +L     G D   W P  D  L   Y  + ++ K   K  LQ  
Sbjct: 224 FAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIA 283

Query: 299 LGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQ 358
           +GL  D    +   +    S   L+ +   + G   +G Q    G    P      ++  
Sbjct: 284 MGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD-PVLQEGFLAAA 342

Query: 359 EELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAP-------I 411
            E    + + +  Y +A  H I  G+D+IL  S  +P     L  LKYG  P       +
Sbjct: 343 AEYPGQVGVQI-GYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGL 401

Query: 412 AVTSSDIEFRHFAEFDHEXXXXXXXXXXXXGNISLSQALEE---IKNNPLSWKRKIKDAM 468
           A T SD    + A+                   SL +A+     + + P  W+   + AM
Sbjct: 402 ADTVSDCSLENLAD-----GVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAM 456

Query: 469 LQDFSW 474
             DFSW
Sbjct: 457 AMDFSW 462


>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
           With Adp And Acceptor Analogue Heppso
 pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
           With Adp And Oligosaccharides
          Length = 485

 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 107/486 (22%), Positives = 184/486 (37%), Gaps = 44/486 (9%)

Query: 9   FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKA 68
             ++H+C+EM PL+  G LA  +  L  A    G    V+LP +  +   GV   + +  
Sbjct: 1   MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIR-RGVTDAQVVSR 59

Query: 69  ECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY----SSFFNRESVYGYSDDFERFTYFS 124
                F G +    +  G  +G+G+  I   H      S ++  +++ Y+D+  RF    
Sbjct: 60  R--DTFAGHI---TLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLG 114

Query: 125 --RASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIXXX--XXXXXXXX 180
              A +   +    +PDV+H H+W   +  P +      +G     +             
Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAY---LAARGRPAKSVFTVHNLAYQGMFY 170

Query: 181 XEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS 240
             H + + L    P        L+ N +   ++ LK G+ Y++ +  VS  +++      
Sbjct: 171 AHHMNDIQL----PWSFFNIHGLEFNGQ---ISFLKAGLYYADHITAVSPTYAREITEPQ 223

Query: 241 LSHGLESTLAIH--QDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQ 298
            ++G+E  L     + +L     G D   W P  D  L   Y  + ++ K   K  LQ  
Sbjct: 224 FAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIA 283

Query: 299 LGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQ 358
           +GL  D    +   +    S   L+ +   + G   +G Q    G    P      ++  
Sbjct: 284 MGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD-PVLQEGFLAAA 342

Query: 359 EELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAP-------I 411
            E    + + +  Y +A  H I  G+D+IL  S   P     L  LKYG  P       +
Sbjct: 343 AEYPGQVGVQI-GYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTLPLVRRTGGL 401

Query: 412 AVTSSDIEFRHFAEFDHEXXXXXXXXXXXXGNISLSQALEE---IKNNPLSWKRKIKDAM 468
           A T SD    + A+                   SL +A+     + + P  W+   + AM
Sbjct: 402 ADTVSDCSLENLAD-----GVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAM 456

Query: 469 LQDFSW 474
             DFSW
Sbjct: 457 AMDFSW 462


>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
          Length = 477

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/486 (21%), Positives = 184/486 (37%), Gaps = 44/486 (9%)

Query: 9   FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKA 68
             ++H+ +EM PL+  G LA  +  L  A    G    V+LP +  +   GV   + +  
Sbjct: 1   MQVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIR-RGVTDAQVVSR 59

Query: 69  ECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY----SSFFNRESVYGYSDDFERFTYFS 124
                F G +    +  G  +G+G+  I   H      S ++  +++ Y+D+  RF    
Sbjct: 60  R--DTFAGHI---TLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLG 114

Query: 125 --RASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIXXX--XXXXXXXX 180
              A +   +    +PDV+H H+W   +  P +      +G     +             
Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAY---LAARGRPAKSVFTVHNLAYQGMFY 170

Query: 181 XEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS 240
             H + + L    P        L+ N +   ++ LK G+ Y++ +  VS  +++      
Sbjct: 171 AHHMNDIQL----PWSFFNIHGLEFNGQ---ISFLKAGLYYADHITAVSPTYAREITEPQ 223

Query: 241 LSHGLESTLAIH--QDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQ 298
            ++G+E  L     + +L     G D   W P  D  L   Y  + ++ K   K  LQ  
Sbjct: 224 FAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIA 283

Query: 299 LGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQ 358
           +GL  D    +   +    S   L+ +   + G   +G Q    G    P      ++  
Sbjct: 284 MGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD-PVLQEGFLAAA 342

Query: 359 EELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAP-------I 411
            E    + + +  Y +A  H I  G+D+IL  S  +P     L  LKYG  P       +
Sbjct: 343 AEYPGQVGVQI-GYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGL 401

Query: 412 AVTSSDIEFRHFAEFDHEXXXXXXXXXXXXGNISLSQALEE---IKNNPLSWKRKIKDAM 468
           A T SD    + A+                   SL +A+     + + P  W+   + AM
Sbjct: 402 ADTVSDSSLENLAD-----GVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAM 456

Query: 469 LQDFSW 474
             DFSW
Sbjct: 457 AMDFSW 462


>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
           Tumefaciens In Complex With Adp
 pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
           Tumefaciens In Complex With Adp
          Length = 485

 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 97/486 (19%), Positives = 191/486 (39%), Gaps = 43/486 (8%)

Query: 9   FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKA 68
            +++ + +E+ PL+  G LA  V  L  AL+  G     ++P Y       V+       
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPA-----VKAAVTDPV 55

Query: 69  ECYSYFNGQLHANKIWIGVVSGIGVTFI---QPLHY---SSFFNRESVYGYSDDFERFTY 122
           +C+ + +  L   K  +  V    +  +    P +Y      +  ++   Y D+++RF  
Sbjct: 56  KCFEFTD--LLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAA 113

Query: 123 FSRAS--LDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIXXXXXXXXXXX 180
            S A+  +   V    +PD++H H+W+ A+  P++        +                
Sbjct: 114 LSLAAARIGAGVLPGWRPDMVHAHDWQAAMT-PVYMRYAETPEIPSLLTIHNIAFQGQFG 172

Query: 181 XEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS 240
                KLAL    PA     + ++       V+ LKGG+  +  +  VS  +++  +   
Sbjct: 173 ANIFSKLAL----PAHAFGMEGIEYYND---VSFLKGGLQTATALSTVSPSYAEEILTAE 225

Query: 241 LSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLG 300
              GLE  +      L     G D+  W+P+ D  + +NY A ++K + + K  + +   
Sbjct: 226 FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR 285

Query: 301 LSKDASTIVVGCIFSDVS-----DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALV 355
           +  D S +   C+ S ++     D+  E +  +V    + G   V    +     +    
Sbjct: 286 IDDDGSPLF--CVISRLTWQKGIDLMAEAVDEIV---SLGGRLVVLGAGDVALEGALLAA 340

Query: 356 SFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415
           + +   + G+ I    Y++ L HL+ +G D I+  S  +P     L AL+YG  P+   +
Sbjct: 341 ASRHHGRVGVAI---GYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVART 397

Query: 416 SDIEFRHFAEFDHEXXXXXXXXXXXXGNISLSQALEEIK------NNPLSWKRKIKDAML 469
             +      + +H               ++L    + I+      ++P  W +  K  M 
Sbjct: 398 GGLA-DTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMK 456

Query: 470 QDFSWD 475
            D SW+
Sbjct: 457 SDVSWE 462


>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain
 pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain In Complex With Adp
          Length = 536

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 5/206 (2%)

Query: 212 VNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPS 271
           +N +K G++ +++V+ VS  +++  +I  ++ G E    +    +     G D S WDPS
Sbjct: 232 INWMKAGILEADRVLTVSPYYAE-ELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPS 290

Query: 272 NDKFLTENYCAED-MKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVR 330
            DK++T  Y A   ++ K + K  LQ + GL  D    ++  I         + + A + 
Sbjct: 291 KDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIP 350

Query: 331 GAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCH 390
                 +Q V  GT K       L+   EE   G V  V  ++  L HLI +G+D++   
Sbjct: 351 ELMQEDVQIVLLGTGK--KKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVP 408

Query: 391 SFHDPLLQVPLKALKYGAAPIAVTSS 416
           S  +P   + L+ ++YG  P A  S+
Sbjct: 409 SRFEPCGLIQLQGMRYG-TPCACAST 433


>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
           Agrobacterium Tumefaciens (Non-Complexed Form)
 pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
           Agrobacterium Tumefaciens (Non-Complexed Form)
          Length = 485

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/485 (19%), Positives = 187/485 (38%), Gaps = 43/485 (8%)

Query: 10  HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAE 69
           +++ + +E+ PL+  G LA  V  L  AL+  G     ++P Y       V+       +
Sbjct: 2   NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPA-----VKAAVTDPVK 56

Query: 70  CYSYFNGQLHANKIWIGVVSGIGVTFI---QPLHY---SSFFNRESVYGYSDDFERFTYF 123
           C+ + +  L   K  +  V    +  +    P +Y      +  ++   Y D+++RF   
Sbjct: 57  CFEFTD--LLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAAL 114

Query: 124 SRAS--LDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIXXXXXXXXXXXX 181
           S A+  +   V    +PD +H H+W+ A   P++        +                 
Sbjct: 115 SLAAARIGAGVLPGWRPDXVHAHDWQAAXT-PVYXRYAETPEIPSLLTIHNIAFQGQFGA 173

Query: 182 EHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSL 241
               KLAL    PA     + ++       V+ LKGG+  +  +  VS  +++  +    
Sbjct: 174 NIFSKLAL----PAHAFGXEGIEYYND---VSFLKGGLQTATALSTVSPSYAEEILTAEF 226

Query: 242 SHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGL 301
             GLE  +      L     G D+  W+P+ D  + +NY A ++K + + K  + +   +
Sbjct: 227 GXGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI 286

Query: 302 SKDASTIVVGCIFSDVS-----DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVS 356
             D S +   C+ S ++     D+  E +  +V    + G   V    +     +    +
Sbjct: 287 DDDGSPLF--CVISRLTWQKGIDLXAEAVDEIV---SLGGRLVVLGAGDVALEGALLAAA 341

Query: 357 FQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSS 416
            +   + G+ I    Y++ L HL  +G D I+  S  +P     L AL+YG  P+   + 
Sbjct: 342 SRHHGRVGVAI---GYNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTG 398

Query: 417 DIEFRHFAEFDHEXXXXXXXXXXXXGNISLSQALEEIK------NNPLSWKRKIKDAMLQ 470
            +      + +H               ++L    + I+      ++P  W +  K     
Sbjct: 399 GLA-DTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQXQKLGXKS 457

Query: 471 DFSWD 475
           D SW+
Sbjct: 458 DVSWE 462


>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
 pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 428

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 155/408 (37%), Gaps = 80/408 (19%)

Query: 22  VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLR----EIKAECYSYFNGQ 77
           V +G LA  +T +S AL   GH V V  P +     + +  +R    E++ +      G 
Sbjct: 15  VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGN 74

Query: 78  LHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDD--FERFTYFSRAS---LDYIV 132
           L   +I  G++                 + E VYG   D    +   F RAS   L+ ++
Sbjct: 75  LRIYRIGGGLL-----------------DSEDVYGPGWDGLIRKAVTFGRASVLLLNDLL 117

Query: 133 KSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIXXXXXXXXXXXXEHP----DKLA 188
           +    PDV+H H+W T   G L    F        +I            + P     +  
Sbjct: 118 REEPLPDVVHFHDWHTVFAGALIKKYF--------KIPAVFTIHRLNKSKLPAFYFHEAG 169

Query: 189 LCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248
           L  L P     PD   ++T  ++ +I+              +  S+G +I          
Sbjct: 170 LSELAPY----PDIDPEHTGGYIADIV--------------TTVSRGYLIDEWGF----- 206

Query: 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTI 308
               + K+     G D S W   N+ +LT    + D + K     +L  + G+ +  + +
Sbjct: 207 FRNFEGKITYVFNGIDCSFW---NESYLT---GSRDERKK-----SLLSKFGMDEGVTFM 255

Query: 309 VVGCIFSDVS--DVFLENLKAVVRGAKMRGIQFVFTGTN--KLPSASRALVSFQEELKDG 364
            +G         DV L+ ++ +    + + ++F+  G    +L   +R+L    EE    
Sbjct: 256 FIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSL----EEKHGN 311

Query: 365 IVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIA 412
           + +  +      +  ++   D ++  S+ +P   V L+A+  GA PIA
Sbjct: 312 VKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 359


>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
          Length = 439

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 155/408 (37%), Gaps = 80/408 (19%)

Query: 22  VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLR----EIKAECYSYFNGQ 77
           V +G LA  +T +S AL   GH V V  P +     + +  +R    E++ +      G 
Sbjct: 15  VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGN 74

Query: 78  LHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDD--FERFTYFSRAS---LDYIV 132
           L   +I  G++                 + E VYG   D    +   F RAS   L+ ++
Sbjct: 75  LRIYRIGGGLL-----------------DSEDVYGPGWDGLIRKAVTFGRASVLLLNDLL 117

Query: 133 KSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIXXXXXXXXXXXXEHP----DKLA 188
           +    PDV+H H+W T   G L    F        +I            + P     +  
Sbjct: 118 REEPLPDVVHFHDWHTVFAGALIKKYF--------KIPAVFTIHRLNKSKLPAFYFHEAG 169

Query: 189 LCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248
           L  L P     PD   ++T  ++ +I+              +  S+G +I          
Sbjct: 170 LSELAPY----PDIDPEHTGGYIADIV--------------TTVSRGYLIDEWGF----- 206

Query: 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTI 308
               + K+     G D S W   N+ +LT    + D + K     +L  + G+ +  + +
Sbjct: 207 FRNFEGKITYVFNGIDCSFW---NESYLT---GSRDERKK-----SLLSKFGMDEGVTFM 255

Query: 309 VVGCIFSDVS--DVFLENLKAVVRGAKMRGIQFVFTGTN--KLPSASRALVSFQEELKDG 364
            +G         DV L+ ++ +    + + ++F+  G    +L   +R+L    EE    
Sbjct: 256 FIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSL----EEKHGN 311

Query: 365 IVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIA 412
           + +  +      +  ++   D ++  S+ +P   V L+A+  GA PIA
Sbjct: 312 VKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 359


>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
          Length = 440

 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 84/408 (20%), Positives = 154/408 (37%), Gaps = 80/408 (19%)

Query: 22  VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLR----EIKAECYSYFNGQ 77
           V +G LA  +T +S AL   GH V V  P +     + +  +R    E++ +      G 
Sbjct: 16  VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGN 75

Query: 78  LHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDD--FERFTYFSRAS---LDYIV 132
           L   +I  G++                 + E VYG   D    +   F RAS   L+ ++
Sbjct: 76  LRIYRIGGGLL-----------------DSEDVYGPGWDGLIRKAVTFGRASVLLLNDLL 118

Query: 133 KSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIXXXXXXXXXXXXEHP----DKLA 188
           +    PDV+H H+W T   G L    F        +I            + P     +  
Sbjct: 119 REEPLPDVVHFHDWHTVFAGALIKKYF--------KIPAVFTIHRLNKSKLPAFYFHEAG 170

Query: 189 LCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248
           L  L P     PD   ++T  ++ +I+              +  S+G +I          
Sbjct: 171 LSELAPY----PDIDPEHTGGYIADIV--------------TTVSRGYLIDEWGF----- 207

Query: 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTI 308
               + K+     G D S W   N+ +LT +        +   K +L  + G+ +  + +
Sbjct: 208 FRNFEGKITYVFNGIDCSFW---NESYLTGS--------RDERKKSLLSKFGMDEGVTFM 256

Query: 309 VVGCIFSDVS--DVFLENLKAVVRGAKMRGIQFVFTGTN--KLPSASRALVSFQEELKDG 364
            +G         DV L+ ++ +    + + ++F+  G    +L   +R+L    EE    
Sbjct: 257 FIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSL----EEKHGN 312

Query: 365 IVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIA 412
           + +  +      +  ++   D ++  S+ +P   V L+A+  GA PIA
Sbjct: 313 VKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 360


>pdb|2ODL|A Chain A, Crystal Structure Of The Hmw1 Secretion Domain From
           Haemophilus Influenzae
          Length = 373

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 257 LVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVG 311
           ++   GF +ST D SN+     N+  E  K K + ++     + + KD S  ++G
Sbjct: 93  IINTNGFTASTLDISNENIKARNFTFEQTKDKALAEIVNHGLITVGKDGSVNLIG 147


>pdb|1N86|C Chain C, Crystal Structure Of Human D-Dimer From Cross-Linked
           Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
 pdb|1N86|F Chain F, Crystal Structure Of Human D-Dimer From Cross-Linked
           Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
 pdb|1N8E|C Chain C, Fragment Double-D From Human Fibrin
 pdb|1N8E|F Chain F, Fragment Double-D From Human Fibrin
 pdb|2HLO|C Chain C, Crystal Structure Of Fragment D-Dimer From Human Fibrin
           Complexed With Gly-Hydroxypro-Arg-Pro-Amide
 pdb|2HLO|F Chain F, Crystal Structure Of Fragment D-Dimer From Human Fibrin
           Complexed With Gly-Hydroxypro-Arg-Pro-Amide
 pdb|2Z4E|C Chain C, Crystal Structure Of D-dimer From Human Fibrin Complexed
           With Gly-his- Arg-pro-tyr-amide
 pdb|2Z4E|F Chain F, Crystal Structure Of D-dimer From Human Fibrin Complexed
           With Gly-his- Arg-pro-tyr-amide
 pdb|2Q9I|C Chain C, Crystal Structure Of D-dimer From Human Fibrin Complexed
           With Met-his- Arg-pro-tyr-amide.
 pdb|2Q9I|F Chain F, Crystal Structure Of D-dimer From Human Fibrin Complexed
           With Met-his- Arg-pro-tyr-amide
          Length = 324

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 214 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 241


>pdb|1FZA|C Chain C, Crystal Structure Of Fibrinogen Fragment D
 pdb|1FZA|F Chain F, Crystal Structure Of Fibrinogen Fragment D
 pdb|1FZB|C Chain C, Crystal Structure Of Crosslinked Fragment D
 pdb|1FZB|F Chain F, Crystal Structure Of Crosslinked Fragment D
 pdb|1FZC|C Chain C, Crystal Structure Of Fragment Double-d From Human Fibrin
           With Two Different Bound Ligands
 pdb|1FZC|F Chain F, Crystal Structure Of Fragment Double-d From Human Fibrin
           With Two Different Bound Ligands
 pdb|1FZE|C Chain C, Crystal Structure Of Fragment Double-D From Human Fibrin
 pdb|1FZE|F Chain F, Crystal Structure Of Fragment Double-D From Human Fibrin
 pdb|1FZF|C Chain C, Crystal Structure Of Fragment Double-D From Human Fibrin
           With The Peptide Ligand Gly-His-Arg-Pro-Amide
 pdb|1FZF|F Chain F, Crystal Structure Of Fragment Double-D From Human Fibrin
           With The Peptide Ligand Gly-His-Arg-Pro-Amide
 pdb|1FZG|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen With
           The Peptide Ligand Gly-His-Arg-Pro-Amide
 pdb|1FZG|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen With
           The Peptide Ligand Gly-His-Arg-Pro-Amide
 pdb|3E1I|C Chain C, Crystal Structure Of Bbetad432a Variant Fibrinogen
           Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
 pdb|3E1I|F Chain F, Crystal Structure Of Bbetad432a Variant Fibrinogen
           Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
 pdb|2XNX|C Chain C, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
           Human Fibrinogen
 pdb|2XNX|F Chain F, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
           Human Fibrinogen
 pdb|2XNX|I Chain I, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
           Human Fibrinogen
 pdb|2XNX|L Chain L, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
           Human Fibrinogen
 pdb|2XNY|C Chain C, A Fragment Of Streptococcal M1 Protein In Complex With
           Human Fibrinogen
 pdb|2XNY|F Chain F, A Fragment Of Streptococcal M1 Protein In Complex With
           Human Fibrinogen
          Length = 319

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 214 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 241


>pdb|2H43|C Chain C, Crystal Structure Of Human Fragment D Complexed With
           Ala-His-Arg-Pro- Amide
 pdb|2H43|F Chain F, Crystal Structure Of Human Fragment D Complexed With
           Ala-His-Arg-Pro- Amide
 pdb|2HOD|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen
           Complexed With Gly-hydroxypro-arg-pro-amide
 pdb|2HOD|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen
           Complexed With Gly-hydroxypro-arg-pro-amide
 pdb|2HOD|I Chain I, Crystal Structure Of Fragment D From Human Fibrinogen
           Complexed With Gly-hydroxypro-arg-pro-amide
 pdb|2HOD|L Chain L, Crystal Structure Of Fragment D From Human Fibrinogen
           Complexed With Gly-hydroxypro-arg-pro-amide
 pdb|2HPC|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen
           Complexed With Gly-Pro-Arg-Pro-Amide.
 pdb|2HPC|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen
           Complexed With Gly-Pro-Arg-Pro-Amide.
 pdb|2HPC|I Chain I, Crystal Structure Of Fragment D From Human Fibrinogen
           Complexed With Gly-Pro-Arg-Pro-Amide.
 pdb|2HPC|L Chain L, Crystal Structure Of Fragment D From Human Fibrinogen
           Complexed With Gly-Pro-Arg-Pro-Amide
          Length = 323

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 213 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 240


>pdb|3H32|C Chain C, Crystal Structure Of D-Dimer From Human Fibrin Complexed
           With Gly-His- Arg-Pro-Tyr-Amide
 pdb|3H32|F Chain F, Crystal Structure Of D-Dimer From Human Fibrin Complexed
           With Gly-His- Arg-Pro-Tyr-Amide
          Length = 317

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 207 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 234


>pdb|1FIC|A Chain A, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
           Terminal Fragment
 pdb|1FIC|B Chain B, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
           Terminal Fragment
 pdb|2FIB|A Chain A, Recombinant Human Gamma-Fibrinogen Carboxyl Terminal
           Fragment (Residues 143-411) Complexed To The Peptide
           Gly- Pro-Arg-Pro At Ph 6.0
 pdb|1FIB|A Chain A, Recombinant Human Gamma-Fibrinogen Carboxyl Terminal
           Fragment (Residues 143-411) Bound To Calcium At Ph 6.0
 pdb|1FID|A Chain A, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
           Terminal Fragment
          Length = 269

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 159 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 186


>pdb|1RF0|C Chain C, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
 pdb|1RF0|F Chain F, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
 pdb|1RF1|C Chain C, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
           With The Peptide Ligand Gly-His-Arg-Pro-Amide
 pdb|1RF1|F Chain F, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
           With The Peptide Ligand Gly-His-Arg-Pro-Amide
          Length = 311

 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 206 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 233


>pdb|1LT9|C Chain C, Crystal Structure Of Recombinant Human Fibrinogen Fragment
           D
 pdb|1LT9|F Chain F, Crystal Structure Of Recombinant Human Fibrinogen Fragment
           D
 pdb|1LTJ|C Chain C, Crystal Structure Of Recombinant Human Fibrinogen Fragment
           D With The Peptide Ligands Gly-Pro-Arg-Pro-Amide And
           Gly-His-Arg-Pro-Amide
 pdb|1LTJ|F Chain F, Crystal Structure Of Recombinant Human Fibrinogen Fragment
           D With The Peptide Ligands Gly-Pro-Arg-Pro-Amide And
           Gly-His-Arg-Pro-Amide
 pdb|1RE3|C Chain C, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
           With The Peptide Ligand Gly-his-arg-pro-amide
 pdb|1RE3|F Chain F, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
           With The Peptide Ligand Gly-his-arg-pro-amide
 pdb|1RE4|C Chain C, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
 pdb|1RE4|F Chain F, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
 pdb|2FFD|C Chain C, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
 pdb|2FFD|F Chain F, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
          Length = 311

 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 206 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 233


>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
          Length = 411

 Score = 29.6 bits (65), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 301 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 328


>pdb|3HUS|C Chain C, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
           Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
 pdb|3HUS|F Chain F, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
           Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
          Length = 311

 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 206 DKFFTSHKGMQFSTWDNDNDKF--EGNCAE 233


>pdb|3BVH|C Chain C, Crystal Structure Of Recombinant Gammad364a Fibrinogen
           Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
 pdb|3BVH|F Chain F, Crystal Structure Of Recombinant Gammad364a Fibrinogen
           Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
          Length = 293

 Score = 29.3 bits (64), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 200 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 227


>pdb|3FIB|A Chain A, Recombinant Human Gamma-fibrinogen Carboxyl Terminal
           Fragment (residues 143-411) Bound To Calcium At Ph 6.0:
           A Further Refinement Of Pdb Entry 1fib, And Differs From
           1fib By The Modelling Of A Cis Peptide Bond Between
           Residues K338 And C339
          Length = 249

 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283
           DK   +  G   STWD  NDKF  E  CAE
Sbjct: 158 DKFFTSHNGMQFSTWDNDNDKF--EGNCAE 185


>pdb|1UZY|A Chain A, Erythrina Crystagalli Lectin
 pdb|1UZY|B Chain B, Erythrina Crystagalli Lectin
 pdb|1UZZ|A Chain A, Erythrina Cristagalli Bound To N-Linked Oligosaccharide
           And Lactose
 pdb|1UZZ|B Chain B, Erythrina Cristagalli Bound To N-Linked Oligosaccharide
           And Lactose
 pdb|1UZZ|C Chain C, Erythrina Cristagalli Bound To N-Linked Oligosaccharide
           And Lactose
 pdb|1UZZ|D Chain D, Erythrina Cristagalli Bound To N-Linked Oligosaccharide
           And Lactose
 pdb|1V00|A Chain A, Erythrina Cristagalli Lectin
 pdb|1V00|B Chain B, Erythrina Cristagalli Lectin
 pdb|1V00|C Chain C, Erythrina Cristagalli Lectin
 pdb|1V00|D Chain D, Erythrina Cristagalli Lectin
          Length = 242

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 27  LASYVTGLSGALQRKGHLVEV--ILPKYACMNLDGVQGLREIKAECYSYFNGQLHAN 81
           LA  V   SGA+     +V+V  +LP++  + L G  G +   AE +  ++   HA+
Sbjct: 180 LAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHAS 236


>pdb|1FHB|A Chain A, Three-Dimensional Solution Structure Of The Cyanide
          Adduct Of A Met80ala Variant Of Saccharomyces
          Cerevisiae Iso-1- Cytochrome C. Identification Of
          Ligand-Residue Interactions In The Distal Heme Cavity
          Length = 108

 Score = 29.3 bits (64), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 43 HLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIW 84
          H VE   P     NL G+ G +  +AE YSY +  +  N +W
Sbjct: 23 HTVEKGGPHKVGPNLHGIFGRQSGQAEGYSYTDANIKKNVLW 64


>pdb|1CIF|A Chain A, Structural And Functional Effects Of Multiple Mutations
          At Distal Sites In Cytochrome C
          Length = 108

 Score = 28.9 bits (63), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 43 HLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIW 84
          H VE   P     NL G+ G    +AE YSY +  +  N +W
Sbjct: 23 HTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDANIKKNVLW 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,225,059
Number of Sequences: 62578
Number of extensions: 554010
Number of successful extensions: 1162
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 36
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)